Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr3
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 100348136
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 3062571 characters in sequence are not A, C, G, or T
File 273 of 290
Found at i:94183898 original size:80 final size:79
Alignment explanation
Indices: 94183730--94184003 Score: 265
Period size: 80 Copynumber: 3.4 Consensus size: 79
94183720 GAGCACTTTG
* * * * *
94183730 GTAATTTTACAAGTCGAAGGTATTTCAGTAATTTTGCAAATTGAGGGTATTTC-AGTAATTTTGC
1 GTAATTTTACAAATCGAGGGTATTTCAGTAATTTTACAAATCGA-GGTATTTCGA-TAATTTTAC
*
94183794 AAA-CTGAGGGTATTTT
64 AAATC-GAGGGTATTTA
* *
94183810 GATAATTTTACAAATCGAGGGTATTTTAGTAATTTTAC-AATCAATGGTATTTCGATAATTTTAC
1 G-TAATTTTACAAATCGAGGGTATTTCAGTAATTTTACAAATCGA-GGTATTTCGATAATTTTAC
94183874 AAATCGAGGGTATTTCA
64 AAATCGAGGGTATTT-A
* * * * *
94183891 GTTATTTTAC-AATCGACGGTATTTC-GATAATTTTACAAATCGAGGATATTTGGGTAATTTTAT
1 GTAATTTTACAAATCGAGGGTATTTCAG-TAATTTTACAAATCGAGG-TATTTCGATAATTTTAC
*
94183954 AAATCG-GGGCTACTTTG
64 AAATCGAGGG-TA-TTTA
* *
94183971 GTAATTTTACAACTAG-GGGTATTTCAGTAATTT
1 GTAATTTTACAAATCGAGGGTATTTCAGTAATTT
94184004 GGTAAACTAA
Statistics
Matches: 162, Mismatches: 21, Indels: 22
0.79 0.10 0.11
Matches are distributed among these distances:
78 1 0.01
79 27 0.17
80 92 0.57
81 42 0.26
ACGTcount: A:0.31, C:0.10, G:0.19, T:0.40
Consensus pattern (79 bp):
GTAATTTTACAAATCGAGGGTATTTCAGTAATTTTACAAATCGAGGTATTTCGATAATTTTACAA
ATCGAGGGTATTTA
Found at i:94199794 original size:12 final size:12
Alignment explanation
Indices: 94199777--94199801 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
94199767 CAACTGGAAC
94199777 TGATTCAGACAT
1 TGATTCAGACAT
94199789 TGATTCAGACAT
1 TGATTCAGACAT
94199801 T
1 T
94199802 TTTGTATCTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (12 bp):
TGATTCAGACAT
Found at i:94203260 original size:48 final size:48
Alignment explanation
Indices: 94203177--94203685 Score: 581
Period size: 48 Copynumber: 10.8 Consensus size: 48
94203167 CTCGTGCCCT
* * *
94203177 AAGTGCCAATATCATGGCCC-AATG-CAAATTAAATGTATCTTGCACCCG
1 AAGTGCCAATATCATGGCCCGAA-GCCAAA-TCAATGTAACTCGCACCCG
*
94203225 AAGTGCCAATATCATGGCCCGAAGCCAAATCAATGTAACTCGCACCTG
1 AAGTGCCAATATCATGGCCCGAAGCCAAATCAATGTAACTCGCACCCG
* * * * * *
94203273 AAGTGCTAATATCATGGCCCGAAGACAAACCAAAGTAACTCACACCTG
1 AAGTGCCAATATCATGGCCCGAAGCCAAATCAATGTAACTCGCACCCG
* ** *
94203321 AAGTGCCAATATCATGGCCTGAAGCCAAATCAATGTAACTTTCACCAG
1 AAGTGCCAATATCATGGCCCGAAGCCAAATCAATGTAACTCGCACCCG
** * *
94203369 AAGTGCCAATATCATGGCCCGAAGCTGAATTAAAGTAACTCGCACCCG
1 AAGTGCCAATATCATGGCCCGAAGCCAAATCAATGTAACTCGCACCCG
* * * *
94203417 AAGTGCCAATATCATAGCCTGAAGCCAAATCAATGTAACTCGTACCCA
1 AAGTGCCAATATCATGGCCCGAAGCCAAATCAATGTAACTCGCACCCG
* * * * * *
94203465 AAGTGCCAAAATCATAGCCCGAAGCCAAATCAAAGTAGCTCACACAC-
1 AAGTGCCAATATCATGGCCCGAAGCCAAATCAATGTAACTCGCACCCG
* *
94203512 ATTGTGCCAATATCATGGCCCGAA--C--A--AA--TAACTCGCACTCG
1 A-AGTGCCAATATCATGGCCCGAAGCCAAATCAATGTAACTCGCACCCG
* * * *
94203553 AAGTGCCAATATTATGGCCCAAAGCCAAATCAATGTAACTCGCAACTG
1 AAGTGCCAATATCATGGCCCGAAGCCAAATCAATGTAACTCGCACCCG
* * *
94203601 AAGTGCTAATATCATGGCCCGAAGCCAAATCAAAGTAACACGCACCCG
1 AAGTGCCAATATCATGGCCCGAAGCCAAATCAATGTAACTCGCACCCG
94203649 AAGTGCCAATATCATGGCCCGAAGCCAAATCAATGTA
1 AAGTGCCAATATCATGGCCCGAAGCCAAATCAATGTA
94203686 TTCTGACATG
Statistics
Matches: 388, Mismatches: 61, Indels: 24
0.82 0.13 0.05
Matches are distributed among these distances:
40 28 0.07
41 1 0.00
42 3 0.01
44 2 0.01
46 3 0.01
47 1 0.00
48 344 0.89
49 6 0.02
ACGTcount: A:0.36, C:0.27, G:0.17, T:0.19
Consensus pattern (48 bp):
AAGTGCCAATATCATGGCCCGAAGCCAAATCAATGTAACTCGCACCCG
Found at i:94205769 original size:46 final size:45
Alignment explanation
Indices: 94205697--94205896 Score: 143
Period size: 46 Copynumber: 4.4 Consensus size: 45
94205687 TACTCGTCAA
* *
94205697 GGTTAAACCTACACGAATCAGATAATAGTGTCTTATCACCCGTTAG
1 GGTTGAACCTACACAAATCAGATAATAGTG-CTTATCACCCGTTAG
* * *
94205743 GGTTGAACCTACACAAATCGGATAATA-TCGCCTAGTCACTCGTTAG
1 GGTTGAACCTACACAAATCAGATAATAGT-GCTTA-TCACCCGTTAG
* *** * * * ** *
94205789 GTTTGAACCTACAGGGATCATATAATAATGCTTGGTCACCTATTAT
1 GGTTGAACCTACACAAATCAGATAATAGTGCTT-ATCACCCGTTAG
* * * * * *
94205835 GGTTGAACCTACATGAAAT-GGATAATAGTGCCTGACCACCTGTTAA
1 GGTTGAACCTACA-CAAATCAGATAATAGTG-CTTATCACCCGTTAG
94205881 GGTTGAACCTACACAA
1 GGTTGAACCTACACAA
94205897 CAAATAGCCT
Statistics
Matches: 119, Mismatches: 29, Indels: 13
0.74 0.18 0.08
Matches are distributed among these distances:
45 6 0.05
46 107 0.90
47 6 0.05
ACGTcount: A:0.32, C:0.21, G:0.19, T:0.28
Consensus pattern (45 bp):
GGTTGAACCTACACAAATCAGATAATAGTGCTTATCACCCGTTAG
Found at i:94212446 original size:55 final size:54
Alignment explanation
Indices: 94212359--94212560 Score: 179
Period size: 55 Copynumber: 3.8 Consensus size: 54
94212349 ATTAGGGTTT
* * *
94212359 AAGGATACC--GTAAGACCATGCCAAGGCTTGGCAATTGGTAAGGTTTCTAAGGC
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCAA-TGGTAAGGTTTCTAAGGC
* * * * * *
94212412 AAGGAAATCATGTAAGACCATGTCAAGACATGGCATTGAT-ACGTTACTATAAGGC
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCAATGGTAAGGTT--TCTAAGGC
* *
94212467 AAAGG-TCCCATGTAAGACCATATCAAGACATGGCAATGGTAA-GTTTC-AA---
1 -AAGGATACCATGTAAGACCATGTCAAGACATGGCAATGGTAAGGTTTCTAAGGC
* * *
94212516 AAGGATACCACGTAAGACCATGACAAGTCATGGCAATGGTAAGGT
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCAATGGTAAGGT
94212561 ACCCGTGTAT
Statistics
Matches: 120, Mismatches: 21, Indels: 19
0.75 0.13 0.12
Matches are distributed among these distances:
48 4 0.03
49 32 0.27
50 2 0.02
52 2 0.02
53 12 0.10
54 3 0.03
55 60 0.50
56 5 0.04
ACGTcount: A:0.36, C:0.18, G:0.24, T:0.22
Consensus pattern (54 bp):
AAGGATACCATGTAAGACCATGTCAAGACATGGCAATGGTAAGGTTTCTAAGGC
Found at i:94212771 original size:16 final size:16
Alignment explanation
Indices: 94212750--94212780 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
94212740 ATAAATTTGA
94212750 TTAAGTAAGTAAGTAT
1 TTAAGTAAGTAAGTAT
*
94212766 TTAAGTAAGTGAGTA
1 TTAAGTAAGTAAGTA
94212781 AGTGATGAAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.00, G:0.23, T:0.35
Consensus pattern (16 bp):
TTAAGTAAGTAAGTAT
Found at i:94216003 original size:46 final size:47
Alignment explanation
Indices: 94215867--94216033 Score: 168
Period size: 46 Copynumber: 3.6 Consensus size: 47
94215857 GTTATTTGTG
**
94215867 AGCCAGTGTAAGACCATGTCTAGGACATGGCATTGGC-ATTGAGATG-A
1 AGCCAGTGTAAGACCATGTCTAGGACAT-GCATCAGCTA-TGAGATGTA
* * * *
94215914 GAGCTAGTGTAAGA-CATGTCTGGGACATGCATCGACCT-CGAGATGTA
1 -AGCCAGTGTAAGACCATGTCTAGGACATGCATC-AGCTATGAGATGTA
94215961 AGCCAGTGTAAGA-CATGTCTAGGACATGCATCAGCTATGAGATGT-
1 AGCCAGTGTAAGACCATGTCTAGGACATGCATCAGCTATGAGATGTA
* * *
94216006 -GTCAATGTAAGACCATGTCTTGGACATG
1 AGCCAGTGTAAGACCATGTCTAGGACATG
94216034 ACACCGGCAC
Statistics
Matches: 101, Mismatches: 13, Indels: 13
0.80 0.10 0.10
Matches are distributed among these distances:
44 10 0.10
45 17 0.17
46 47 0.47
47 15 0.15
48 12 0.12
ACGTcount: A:0.29, C:0.18, G:0.28, T:0.25
Consensus pattern (47 bp):
AGCCAGTGTAAGACCATGTCTAGGACATGCATCAGCTATGAGATGTA
Found at i:94227258 original size:29 final size:30
Alignment explanation
Indices: 94227214--94227270 Score: 89
Period size: 29 Copynumber: 1.9 Consensus size: 30
94227204 CTCGTTGCAA
*
94227214 TCTGGTGGCCTCGCCAC-ATATATATATGT
1 TCTGGTGGCCTAGCCACAATATATATATGT
*
94227243 TCTGGTGGCCTAGCCACAATATCTATAT
1 TCTGGTGGCCTAGCCACAATATATATAT
94227271 CTGGTGACTT
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
29 16 0.64
30 9 0.36
ACGTcount: A:0.23, C:0.25, G:0.19, T:0.33
Consensus pattern (30 bp):
TCTGGTGGCCTAGCCACAATATATATATGT
Found at i:94232048 original size:49 final size:47
Alignment explanation
Indices: 94231945--94232115 Score: 172
Period size: 47 Copynumber: 3.7 Consensus size: 47
94231935 AGATGTAAGC
* * * *
94231945 CAGTATAAGA-CATGTATGGGACAT-GCATCGGCTACAA--GATGTGT
1 CAGTGTAAGACCATGTCTGGGACATGGCATCGACT-CAATGGATGAGT
* * *
94231989 CAGTGTAAGACCATGTCAGGGACATGGCATCGGCCTCAATTTTGAT-AGT
1 CAGTGTAAGACCATGTCTGGGACATGGCATC-GACTCAA--TGGATGAGT
* ** *
94232038 CAGTGTAAGACCATGTCTGGGACATGGCCTCGACTTGATGGATGAGC
1 CAGTGTAAGACCATGTCTGGGACATGGCATCGACTCAATGGATGAGT
94232085 CAGTGTAAGACCATGTCTGGGACATGGCATC
1 CAGTGTAAGACCATGTCTGGGACATGGCATC
94232116 AGCATTATAC
Statistics
Matches: 106, Mismatches: 13, Indels: 13
0.80 0.10 0.10
Matches are distributed among these distances:
44 9 0.08
45 12 0.11
46 12 0.11
47 35 0.33
48 4 0.04
49 31 0.29
50 3 0.03
ACGTcount: A:0.27, C:0.20, G:0.29, T:0.25
Consensus pattern (47 bp):
CAGTGTAAGACCATGTCTGGGACATGGCATCGACTCAATGGATGAGT
Found at i:94232103 original size:47 final size:48
Alignment explanation
Indices: 94231900--94232115 Score: 168
Period size: 46 Copynumber: 4.6 Consensus size: 48
94231890 GACAAGAGCT
* * *
94231900 AGTGTAAGA-CATGTTTGGGACAT-GCATCGGCCTCGAGA-TGTA-AGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGACTC-A-ATTGGATAGCC
* * * *
94231946 AGTATAAGA-CATGTATGGGACAT-GCATCGG-CTACAA---GATGTGTC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGACT-CAATTGGAT-AGCC
* * * *
94231990 AGTGTAAGACCATGTCAGGGACATGGCATCGGCCTCAATTTTGATAGTC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGACTCAA-TTGGATAGCC
* **
94232039 AGTGTAAGACCATGTCTGGGACATGGCCTC-GACTTGA-TGGATGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGACTCAATTGGAT-AGCC
94232086 AGTGTAAGACCATGTCTGGGACATGGCATC
1 AGTGTAAGACCATGTCTGGGACATGGCATC
94232116 AGCATTATAC
Statistics
Matches: 142, Mismatches: 17, Indels: 21
0.79 0.09 0.12
Matches are distributed among these distances:
42 1 0.01
44 11 0.08
45 15 0.11
46 43 0.30
47 34 0.24
48 4 0.03
49 31 0.22
50 3 0.02
ACGTcount: A:0.27, C:0.19, G:0.29, T:0.25
Consensus pattern (48 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCGGACTCAATTGGATAGCC
Found at i:94248333 original size:5 final size:5
Alignment explanation
Indices: 94248323--94248347 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
94248313 AAATAATAAA
94248323 AAATT AAATT AAATT AAATT AAATT
1 AAATT AAATT AAATT AAATT AAATT
94248348 GCAAGAAAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (5 bp):
AAATT
Found at i:94250993 original size:30 final size:30
Alignment explanation
Indices: 94250959--94251024 Score: 114
Period size: 30 Copynumber: 2.2 Consensus size: 30
94250949 GTGTCTCAGC
94250959 CGTGTGCGACACACGACTATGTTACATGGT
1 CGTGTGCGACACACGACTATGTTACATGGT
* *
94250989 CGTGTGCGACACACGACTATTTTGCATGGT
1 CGTGTGCGACACACGACTATGTTACATGGT
94251019 CGTGTG
1 CGTGTG
94251025 TCCCTTAGGG
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 34 1.00
ACGTcount: A:0.20, C:0.23, G:0.29, T:0.29
Consensus pattern (30 bp):
CGTGTGCGACACACGACTATGTTACATGGT
Found at i:94254545 original size:21 final size:21
Alignment explanation
Indices: 94254508--94254550 Score: 52
Period size: 21 Copynumber: 2.0 Consensus size: 21
94254498 GTGTAACTTG
*
94254508 TGAATTAAATACTTGAAATTA
1 TGAATTAAATACATGAAATTA
*
94254529 TGAATTAAGA-ACATGAATTTA
1 TGAATTAA-ATACATGAAATTA
94254550 T
1 T
94254551 TTGGAAACTC
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
21 18 0.95
22 1 0.05
ACGTcount: A:0.47, C:0.05, G:0.12, T:0.37
Consensus pattern (21 bp):
TGAATTAAATACATGAAATTA
Found at i:94256007 original size:39 final size:39
Alignment explanation
Indices: 94255955--94256121 Score: 264
Period size: 39 Copynumber: 4.3 Consensus size: 39
94255945 TATGAGATTG
*
94255955 AAAATATCCGGACATGAGGTTCGCAGGCTATATGCTAGA
1 AAAATATCCGGACATGAGGTCCGCAGGCTATATGCTAGA
*
94255994 AAAATATCCGGACATGAGGTCCGCAGGCTATATGCTGGA
1 AAAATATCCGGACATGAGGTCCGCAGGCTATATGCTAGA
94256033 AAAATATCCGGACATGAGGTCCGCAGGCTATATGCTA-A
1 AAAATATCCGGACATGAGGTCCGCAGGCTATATGCTAGA
* ** *
94256071 AAATATATCCGGACTTGAGGTCCGCAGGCTACGTGCTGGA
1 AAA-ATATCCGGACATGAGGTCCGCAGGCTATATGCTAGA
94256111 AAAATATCCGG
1 AAAATATCCGG
94256122 GTTAAAGACC
Statistics
Matches: 119, Mismatches: 7, Indels: 4
0.92 0.05 0.03
Matches are distributed among these distances:
38 4 0.03
39 111 0.93
40 4 0.03
ACGTcount: A:0.32, C:0.20, G:0.26, T:0.22
Consensus pattern (39 bp):
AAAATATCCGGACATGAGGTCCGCAGGCTATATGCTAGA
Found at i:94256135 original size:78 final size:78
Alignment explanation
Indices: 94255955--94256147 Score: 230
Period size: 78 Copynumber: 2.5 Consensus size: 78
94255945 TATGAGATTG
* ***
94255955 AAAATATCCGGACATGAGGTTCGCAGGCTATATGCTAGAAAAATATCCGGACATGAGGTCCGCAG
1 AAAATATCCGGACATAAGACCCGCAGGCTATATGCTAGAAAAATATCCGGACATGAGGTCCGCAG
*
94256020 GCTATATGCTGGA
66 GCTACATGCTGGA
* ** *
94256033 AAAATATCCGGACATGAGGTCCGCAGGCTATATGCTA-AAAATATATCCGGACTTGAGGTCCGCA
1 AAAATATCCGGACATAAGACCCGCAGGCTATATGCTAGAAAA-ATATCCGGACATGAGGTCCGCA
*
94256097 GGCTACGTGCTGGA
65 GGCTACATGCTGGA
** *
94256111 AAAATATCCGG-GTTAAAGACCCGCAGGCT-TACGCTAG
1 AAAATATCCGGACAT-AAGACCCGCAGGCTATATGCTAG
94256148 CGATGTATTC
Statistics
Matches: 102, Mismatches: 10, Indels: 6
0.86 0.08 0.05
Matches are distributed among these distances:
77 11 0.11
78 91 0.89
ACGTcount: A:0.31, C:0.21, G:0.26, T:0.21
Consensus pattern (78 bp):
AAAATATCCGGACATAAGACCCGCAGGCTATATGCTAGAAAAATATCCGGACATGAGGTCCGCAG
GCTACATGCTGGA
Found at i:94280066 original size:8 final size:8
Alignment explanation
Indices: 94280048--94280085 Score: 58
Period size: 8 Copynumber: 4.6 Consensus size: 8
94280038 AGGAAAATTA
94280048 TGTGTATTT
1 TGTG-ATTT
94280057 TGTGATTT
1 TGTGATTT
94280065 TGTGATTT
1 TGTGATTT
94280073 TGTGATTT
1 TGTGATTT
*
94280081 AGTGA
1 TGTGA
94280086 ATAAACGGAT
Statistics
Matches: 28, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
8 24 0.86
9 4 0.14
ACGTcount: A:0.16, C:0.00, G:0.26, T:0.58
Consensus pattern (8 bp):
TGTGATTT
Found at i:94283729 original size:37 final size:37
Alignment explanation
Indices: 94283668--94283746 Score: 106
Period size: 37 Copynumber: 2.1 Consensus size: 37
94283658 TTATTACAAA
* *
94283668 GTCTTACCCAGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCAGACATAATCCCCACACGAAGTCATCGG
* *
94283705 GTCTTACCCGGACGA-AATCCCCACACGTAGTCATCGG
1 GTCTTACCCAGAC-ATAATCCCCACACGAAGTCATCGG
94283742 GTCTT
1 GTCTT
94283747 TAAAGCTCGG
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
37 36 0.97
38 1 0.03
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCAGACATAATCCCCACACGAAGTCATCGG
Found at i:94283983 original size:47 final size:47
Alignment explanation
Indices: 94283865--94284272 Score: 600
Period size: 47 Copynumber: 8.7 Consensus size: 47
94283855 CCCTTCGGGA
* * * * * *
94283865 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
94283912 CCTGTCACA-ATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
94283958 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
94284005 CTTATCACATATATACACTTTCACATTCATCACAT----C----GGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
94284044 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
94284091 CTTATCATATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
94284138 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
94284187 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTGGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
94284236 CTTATCACATATATATACACTTTCACATTCATCACAT
1 CTTATCAC--ATATATACACTTTCACATTCATCACAT
94284273 AGAATCCTAA
Statistics
Matches: 335, Mismatches: 15, Indels: 20
0.91 0.04 0.05
Matches are distributed among these distances:
39 38 0.11
43 2 0.01
46 38 0.11
47 134 0.40
49 123 0.37
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:94284056 original size:86 final size:86
Alignment explanation
Indices: 94283955--94284228 Score: 431
Period size: 86 Copynumber: 3.0 Consensus size: 86
94283945 TCGGCCATTA
94283955 GGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATA
1 GGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATA
94284020 CACTTTCACATTCATCACATC
66 CACTTTCACATTCATCACATC
*
94284041 GGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCATATATATA
1 GGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATA
94284106 CACTTTCACATTCATCACATCGGC
66 CACTTTCACATTCATCACAT---C
94284130 TATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
1 -----GGCCTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
94284195 ATATATATACACTTTCACATTCATCACATC
59 --ATATATACACTTTCACATTCATCACATC
94284225 GGCC
1 GGCC
94284229 ATTGGGCCTT
Statistics
Matches: 174, Mismatches: 2, Indels: 20
0.89 0.01 0.10
Matches are distributed among these distances:
86 84 0.48
89 1 0.01
90 4 0.02
94 11 0.06
95 1 0.01
96 46 0.26
98 27 0.16
ACGTcount: A:0.30, C:0.29, G:0.08, T:0.33
Consensus pattern (86 bp):
GGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATA
CACTTTCACATTCATCACATC
Found at i:94284079 original size:133 final size:134
Alignment explanation
Indices: 94283907--94284272 Score: 556
Period size: 133 Copynumber: 2.6 Consensus size: 134
94283897 CGTTGGCCAC
* *
94283907 TCGGCCCTGTCACA-ATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATA
1 TCGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATA
94283971 TACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC-ATATATACACTTTCACATTCAT
66 TACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACAATATATACACTTTCACATTCAT
94284035 CACA
131 CACA
*
94284039 TCGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCATATATA
1 TCGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATA
*
94284104 TACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATATACACTTTCACATTCA
66 TACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACA-ATATATACACTTTCACATTCA
94284169 TCACA
130 TCACA
*
94284174 TCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTGGGCCTT
1 T----C----GGCCTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTT
94284239 ATCACATATATATACACTTTCACATTCATCACAT
56 ATCAC--ATATATACACTTTCACATTCATCACAT
94284273 AGAATCCTAA
Statistics
Matches: 213, Mismatches: 6, Indels: 15
0.91 0.03 0.06
Matches are distributed among these distances:
132 12 0.06
133 90 0.42
135 27 0.13
139 1 0.00
143 11 0.05
145 45 0.21
147 27 0.13
ACGTcount: A:0.30, C:0.29, G:0.08, T:0.33
Consensus pattern (134 bp):
TCGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATA
TACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACAATATATACACTTTCACATTCAT
CACA
Found at i:94284153 original size:49 final size:49
Alignment explanation
Indices: 94284041--94284272 Score: 418
Period size: 49 Copynumber: 4.8 Consensus size: 49
94284031 TCATCACATC
94284041 GGCCTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTA
1 GGCCTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTA
*
94284088 GGCCTTAT--CATATATATACACTTTCACATTCATCACATCGGCTATTA
1 GGCCTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTA
94284135 GGCCTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTA
1 GGCCTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTA
*
94284184 GGCCTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTG
1 GGCCTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTA
94284233 GGCCTTATCACATATATATACACTTTCACATTCATCACAT
1 GGCCTTATCACATATATATACACTTTCACATTCATCACAT
94284273 AGAATCCTAA
Statistics
Matches: 178, Mismatches: 3, Indels: 6
0.95 0.02 0.03
Matches are distributed among these distances:
45 1 0.01
47 51 0.29
49 126 0.71
ACGTcount: A:0.30, C:0.28, G:0.08, T:0.34
Consensus pattern (49 bp):
GGCCTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTA
Found at i:94289601 original size:40 final size:40
Alignment explanation
Indices: 94289546--94289755 Score: 348
Period size: 40 Copynumber: 5.2 Consensus size: 40
94289536 GATTATTGAT
94289546 CCGAAGGCAATTATGCGAGTTGATATATCCGGGCTAAGAC
1 CCGAAGGCAATTATGCGAGTTGATATATCCGGGCTAAGAC
*
94289586 CCGAAGGCAATTATGCGAGTTGACATATCCGGGCTAAGAC
1 CCGAAGGCAATTATGCGAGTTGATATATCCGGGCTAAGAC
* *
94289626 CCGAAGGCAATTATGCGAGTAGATATATCCGGGCTATGAC
1 CCGAAGGCAATTATGCGAGTTGATATATCCGGGCTAAGAC
* *
94289666 CCGAAGGCAATTATGCGGGATGATATATCCGGGCTAAGAC
1 CCGAAGGCAATTATGCGAGTTGATATATCCGGGCTAAGAC
* * *
94289706 CCGGAGGCAATTATGCGAGTTGATATGTCCGGGTTAAGAC
1 CCGAAGGCAATTATGCGAGTTGATATATCCGGGCTAAGAC
94289746 CCGAAGGCAA
1 CCGAAGGCAA
94289756 ATGTGTTTGC
Statistics
Matches: 156, Mismatches: 14, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
40 156 1.00
ACGTcount: A:0.30, C:0.20, G:0.29, T:0.21
Consensus pattern (40 bp):
CCGAAGGCAATTATGCGAGTTGATATATCCGGGCTAAGAC
Found at i:94291967 original size:25 final size:25
Alignment explanation
Indices: 94291930--94291981 Score: 70
Period size: 25 Copynumber: 2.1 Consensus size: 25
94291920 AAGGAATTCG
94291930 CACACACACAGTGC-CTCTAATCATT
1 CACACACACAGTGCTCT-TAATCATT
* *
94291955 CACACACATAGTGCTCTTATTCATT
1 CACACACACAGTGCTCTTAATCATT
94291980 CA
1 CA
94291982 TTATTACACA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 22 0.92
26 2 0.08
ACGTcount: A:0.31, C:0.33, G:0.08, T:0.29
Consensus pattern (25 bp):
CACACACACAGTGCTCTTAATCATT
Found at i:94292201 original size:40 final size:40
Alignment explanation
Indices: 94292144--94292388 Score: 373
Period size: 40 Copynumber: 6.1 Consensus size: 40
94292134 CGAATACACG
* * *
94292144 TCACTAGCATGATTGCTCTTCGGGACCTAGCCCGGATATA
1 TCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATATA
* * ** *
94292184 ACACCAGCACGAATGCTCTTCGGGGTTTAGCACGGATATA
1 TCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATATA
* * * *
94292224 TCTCTAGCACGAATGCTCTTCGGAACTTAGTCCGGATACA
1 TCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATATA
*
94292264 TCACTAGCACGAATGCTCTTCGGGATTTAGCCCGGATATA
1 TCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATATA
94292304 TCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATATA
1 TCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATATA
94292344 TCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATATA
1 TCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATATA
94292384 TCACT
1 TCACT
94292389 CTCAATTCTC
Statistics
Matches: 182, Mismatches: 23, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
40 182 1.00
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
TCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATATA
Found at i:94293281 original size:119 final size:119
Alignment explanation
Indices: 94293070--94293308 Score: 469
Period size: 119 Copynumber: 2.0 Consensus size: 119
94293060 TATTCTTCCG
94293070 CCACTAGTCTATTCTATACATGCCATAAAATAGTTCTAAACATGACAGTAACAAGCAGTGGATAG
1 CCACTAGTCTATTCTATACATGCCATAAAATAGTTCTAAACATGACAGTAACAAGCAGTGGATAG
94293135 TGATAGTGTGACTAGTTACTGACGATCCCCGAGCCTGTAGCTTCGCAATGAGAT
66 TGATAGTGTGACTAGTTACTGACGATCCCCGAGCCTGTAGCTTCGCAATGAGAT
94293189 CCACTAGTCTATTCTATACATGCCATAAAATAGTTCTAAACATGACAGTAACAAGCAGTGGATAG
1 CCACTAGTCTATTCTATACATGCCATAAAATAGTTCTAAACATGACAGTAACAAGCAGTGGATAG
*
94293254 TGATAGTGTGACTAGTTGCTGACGATCCCCGAGCCTGTAGCTTCGCAATGAGAT
66 TGATAGTGTGACTAGTTACTGACGATCCCCGAGCCTGTAGCTTCGCAATGAGAT
94293308 C
1 C
94293309 TATAAAACAG
Statistics
Matches: 119, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
119 119 1.00
ACGTcount: A:0.31, C:0.21, G:0.21, T:0.27
Consensus pattern (119 bp):
CCACTAGTCTATTCTATACATGCCATAAAATAGTTCTAAACATGACAGTAACAAGCAGTGGATAG
TGATAGTGTGACTAGTTACTGACGATCCCCGAGCCTGTAGCTTCGCAATGAGAT
Found at i:94293772 original size:37 final size:37
Alignment explanation
Indices: 94293722--94293800 Score: 113
Period size: 37 Copynumber: 2.1 Consensus size: 37
94293712 TTATTACGAA
* * * *
94293722 GTCTTACCCGGACATAATCTCTACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
94293759 GTCTTACCCGGACAAAATCCCCACACGCAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
94293796 GTCTT
1 GTCTT
94293801 TAGAGCTCGG
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:94294037 original size:47 final size:47
Alignment explanation
Indices: 94293919--94294475 Score: 931
Period size: 47 Copynumber: 11.7 Consensus size: 47
94293909 CCCTTCGGGA
* * * * * *
94293919 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
94293966 CCTGTCACA-ATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
94294012 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
94294059 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
94294106 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
94294153 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
94294200 CTTATCACATATATACACTTTCACATTCATCACATCAGCCATTAGGG
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
94294247 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
94294296 CTTATCACATATATATACACTTTCACATTCATCACATCGGCC--TAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
94294343 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
94294392 CTTATCACAAATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
94294441 CTTATCACATATATACACTTTCACATTCATCACAT
1 CTTATCACATATATACACTTTCACATTCATCACAT
94294476 AGAATCCTAA
Statistics
Matches: 490, Mismatches: 15, Indels: 10
0.95 0.03 0.02
Matches are distributed among these distances:
46 38 0.08
47 312 0.64
49 140 0.29
ACGTcount: A:0.30, C:0.30, G:0.08, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:94297668 original size:46 final size:45
Alignment explanation
Indices: 94297615--94297786 Score: 168
Period size: 46 Copynumber: 3.7 Consensus size: 45
94297605 TGGGCATCCA
*
94297615 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCG
1 AACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAA-GTCCG
*** * *
94297661 AACTCGTTGAGTTGAGTCTGAGTTCGAGAGATGTAACTAG-GCA-TCCG
1 AACTCGTTGAGTTGAGTCTGAGTTC-ACTTATG-GA-T-GCGAAGTCCG
* * * * *
94297708 AGCTTGTTGAGTTGAATCTGAATTCACTTATGGATGCGAACGCCCG
1 AACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAA-GTCCG
*
94297754 AGCTCGTTGAGTTGAGTCTGAGTTCACTTATGG
1 AACTCGTTGAGTTGAGTCTGAGTTCACTTATGG
94297787 GCGGGTTACA
Statistics
Matches: 100, Mismatches: 19, Indels: 14
0.75 0.14 0.11
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 1 0.01
46 61 0.61
47 29 0.29
48 1 0.01
49 3 0.03
50 1 0.01
ACGTcount: A:0.23, C:0.18, G:0.28, T:0.31
Consensus pattern (45 bp):
AACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAAGTCCG
Found at i:94300767 original size:15 final size:15
Alignment explanation
Indices: 94300719--94300798 Score: 83
Period size: 15 Copynumber: 5.4 Consensus size: 15
94300709 ATATTTTGGG
*
94300719 TTTCTTTATCCTGGA
1 TTTCTTTATTCTGGA
*
94300734 TCTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
*
94300749 TTTCTTTATTCTGGG
1 TTTCTTTATTCTGGA
*
94300764 TTTCTCTA-TCTTGGA
1 TTTCTTTATTC-TGGA
* *
94300779 TTACTTTATTC-GGT
1 TTTCTTTATTCTGGA
94300793 TTTCTT
1 TTTCTT
94300799 GTTATCTTTG
Statistics
Matches: 53, Mismatches: 10, Indels: 5
0.78 0.15 0.07
Matches are distributed among these distances:
14 9 0.17
15 42 0.79
16 2 0.04
ACGTcount: A:0.11, C:0.17, G:0.14, T:0.57
Consensus pattern (15 bp):
TTTCTTTATTCTGGA
Found at i:94300779 original size:45 final size:44
Alignment explanation
Indices: 94300710--94300798 Score: 117
Period size: 45 Copynumber: 2.0 Consensus size: 44
94300700 CATAGTATCA
* *
94300710 TATTTTGGGTTTCTTTATCCTGGATCT-CTTTATTCTGGATTTCTT
1 TATTCTGGGTTTCTCTATCCTGGAT-TACTTTATTC-GGATTTCTT
* *
94300755 TATTCTGGGTTTCTCTATCTTGGATTACTTTATTCGGTTTTCTT
1 TATTCTGGGTTTCTCTATCCTGGATTACTTTATTCGGATTTCTT
94300799 GTTATCTTTG
Statistics
Matches: 39, Mismatches: 4, Indels: 3
0.85 0.09 0.07
Matches are distributed among these distances:
44 9 0.23
45 30 0.77
ACGTcount: A:0.11, C:0.16, G:0.16, T:0.57
Consensus pattern (44 bp):
TATTCTGGGTTTCTCTATCCTGGATTACTTTATTCGGATTTCTT
Found at i:94311503 original size:30 final size:30
Alignment explanation
Indices: 94311457--94311513 Score: 87
Period size: 30 Copynumber: 1.9 Consensus size: 30
94311447 CATATCTTGG
*
94311457 GTTTCTTTATCCTGGATCTCTTTATTCTGA
1 GTTTCTCTATCCTGGATCTCTTTATTCTGA
* *
94311487 GTTTCTCTATCTTGGATTTCTTTATTC
1 GTTTCTCTATCCTGGATCTCTTTATTC
94311514 GGTTTTCTTG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.12, C:0.19, G:0.12, T:0.56
Consensus pattern (30 bp):
GTTTCTCTATCCTGGATCTCTTTATTCTGA
Found at i:94312887 original size:72 final size:72
Alignment explanation
Indices: 94312801--94312943 Score: 277
Period size: 72 Copynumber: 2.0 Consensus size: 72
94312791 ATCGATAATT
94312801 TGTAAAACTTGCATTCTAGAAGTTTCTAGTATGAAATTGTTTTGAAATATTAATTAGAAGGTCTT
1 TGTAAAACTTGCATTCTAGAAGTTTCTAGTATGAAATTGTTTTGAAATATTAATTAGAAGGTCTT
94312866 AAATAGC
66 AAATAGC
*
94312873 TGTAAAACTTGCATTCTAGAAGTTTCTAGTATGAAATTGTTTTGAAATATTAATTAGGAGGTCTT
1 TGTAAAACTTGCATTCTAGAAGTTTCTAGTATGAAATTGTTTTGAAATATTAATTAGAAGGTCTT
94312938 AAATAG
66 AAATAG
94312944 AAATTTTACC
Statistics
Matches: 70, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
72 70 1.00
ACGTcount: A:0.36, C:0.08, G:0.17, T:0.39
Consensus pattern (72 bp):
TGTAAAACTTGCATTCTAGAAGTTTCTAGTATGAAATTGTTTTGAAATATTAATTAGAAGGTCTT
AAATAGC
Found at i:94314038 original size:46 final size:45
Alignment explanation
Indices: 94313985--94314160 Score: 203
Period size: 46 Copynumber: 3.8 Consensus size: 45
94313975 TATTTGGGCA
94313985 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
*** * *
94314031 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAG-GCA-
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGAAG
* *
94314078 TCCGATCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATACGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* *
94314124 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
94314161 GTGGGTTACA
Statistics
Matches: 109, Mismatches: 14, Indels: 14
0.80 0.10 0.10
Matches are distributed among these distances:
44 3 0.03
45 1 0.01
46 68 0.62
47 32 0.29
48 1 0.01
49 3 0.03
50 1 0.01
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.29
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAG
Found at i:94314140 original size:93 final size:93
Alignment explanation
Indices: 94313981--94314152 Score: 299
Period size: 93 Copynumber: 1.8 Consensus size: 93
94313971 AGGATATTTG
* * *
94313981 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATACGAACGCCCGAACTCGTTGAG
94314046 TTGAGTCCGAGTTCGAGAGATGTAACTA
66 TTGAGTCCGAGTTCGAGAGATGTAACTA
* *
94314074 GGCATCCGATCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATACGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATACGAACGCCCGAACTCGTTGAG
94314139 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
94314153 ACTTATGGGT
Statistics
Matches: 74, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.22, C:0.22, G:0.29, T:0.28
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATACGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGAGAGATGTAACTA
Found at i:94316616 original size:101 final size:101
Alignment explanation
Indices: 94316441--94316635 Score: 252
Period size: 101 Copynumber: 1.9 Consensus size: 101
94316431 TATCGATACC
** * * *
94316441 GTATCGATACTTTGTAGGTTTTGTGAGAAAAAAATGCTATTTTGGTATCCCTTTTAAGAGGGGAT
1 GTATCGATACTCAGTAGGGTTTGTGAGAAAAAAATGCTATTTTGGTATCACTTTTAAGAAGGGAT
94316506 ATCAATAATTCAGAAAATATCGAAACTTGACAGATG
66 ATCAATAATTCAGAAAATATCGAAACTTGACAGATG
94316542 GTATCGATACTCAGTAGGGTTTGTGA-AAAACAGAATG-TCATTTTGGTATCACTTTTAA-AAGG
1 GTATCGATACTCAGTAGGGTTTGTGAGAAAA-A-AATGCT-ATTTTGGTATCACTTTTAAGAAGG
* * * * *
94316604 GCTATCGATAATTCAGATAATATTGATACTTG
63 GATATCAATAATTCAGAAAATATCGAAACTTG
94316636 GCCAAAAAGG
Statistics
Matches: 81, Mismatches: 10, Indels: 6
0.84 0.10 0.06
Matches are distributed among these distances:
100 4 0.05
101 55 0.68
102 22 0.27
ACGTcount: A:0.34, C:0.11, G:0.21, T:0.34
Consensus pattern (101 bp):
GTATCGATACTCAGTAGGGTTTGTGAGAAAAAAATGCTATTTTGGTATCACTTTTAAGAAGGGAT
ATCAATAATTCAGAAAATATCGAAACTTGACAGATG
Found at i:94318155 original size:33 final size:32
Alignment explanation
Indices: 94318088--94318260 Score: 138
Period size: 33 Copynumber: 5.4 Consensus size: 32
94318078 ACTCTATCAA
* * *
94318088 TGTTTACTATCCCAATGGACTA--TATGTTTAG
1 TGTTTACTGTCCC-AGGGACTACCTATGTTTTG
94318119 TGTTTACTGTCCCAGGAGACTACCTATGTTTTG
1 TGTTTACTGTCCCAGG-GACTACCTATGTTTTG
* * *
94318152 TGTTTACTGTCCCAGCAGACTACTTATGTTCTG
1 TGTTTACTGTCCCAG-GGACTACCTATGTTTTG
* *
94318185 TGTTTATTGTCCCAGTGGACTATCTA--TTTTG
1 TGTTTACTGTCCCAG-GGACTACCTATGTTTTG
* * * * * **
94318216 TGTGTACTATCCCAACGGACTACCTCTATCATG
1 TGTTTACTGTCCC-AGGGACTACCTATGTTTTG
94318249 TGTTTACTGTCC
1 TGTTTACTGTCC
94318261 TAGCAGACAA
Statistics
Matches: 113, Mismatches: 22, Indels: 12
0.77 0.15 0.08
Matches are distributed among these distances:
30 2 0.02
31 39 0.35
32 1 0.01
33 71 0.63
ACGTcount: A:0.20, C:0.22, G:0.18, T:0.40
Consensus pattern (32 bp):
TGTTTACTGTCCCAGGGACTACCTATGTTTTG
Found at i:94318215 original size:64 final size:65
Alignment explanation
Indices: 94318092--94318238 Score: 160
Period size: 64 Copynumber: 2.3 Consensus size: 65
94318082 TATCAATGTT
**
94318092 TACTATCCCAATGGACTA--TATGTTTAGTGTTTACTGTCCCAGGAGACTACCTATGTTTTGTGT
1 TACTATCCCAACAGACTACTTATGTTTAGTGTTTACTGTCCCAGGAGACTACCTA-GTTTTGTGT
*
94318155 T
65 G
* * * *
94318156 TACTGTCCCAGCAGACTACTTATGTTCT-GTGTTTATTGTCCCAGTG-GACTATCTA-TTTTGTG
1 TACTATCCCAACAGACTACTTATGTT-TAGTGTTTACTGTCCCAG-GAGACTACCTAGTTTTGTG
94318218 TG
64 TG
*
94318220 TACTATCCCAACGGACTAC
1 TACTATCCCAACAGACTAC
94318239 CTCTATCATG
Statistics
Matches: 69, Mismatches: 10, Indels: 8
0.79 0.11 0.09
Matches are distributed among these distances:
64 38 0.55
66 29 0.42
67 2 0.03
ACGTcount: A:0.21, C:0.22, G:0.18, T:0.39
Consensus pattern (65 bp):
TACTATCCCAACAGACTACTTATGTTTAGTGTTTACTGTCCCAGGAGACTACCTAGTTTTGTGTG
Found at i:94318229 original size:97 final size:97
Alignment explanation
Indices: 94318088--94318293 Score: 220
Period size: 97 Copynumber: 2.1 Consensus size: 97
94318078 ACTCTATCAA
* * * * * **
94318088 TGTTTACTATCCCAATGGACTATATGTTTAGTGTTTACTGTCCC-AGGAGACTACCTATGTTTTG
1 TGTTTACTATCCCAATGGACTATATATTTAGTGTGTACTATCCCAACG-GACTACCTATATCATG
94318152 TGTTTACTGTCCCAGCAGACTACTTATGTTCTG
65 TGTTTACTGTCCCAGCAGACTACTTATGTTCTG
* * * * * *
94318185 TGTTTATTGTCCCAGTGGACTATCTATTTTGTGTGTACTATCCCAACGGACTACCTCTATCATGT
1 TGTTTACTATCCCAATGGACTATATATTTAGTGTGTACTATCCCAACGGACTACCTATATCATGT
* *
94318250 GTTTACTGTCCTAGCAGACAATCTCTAT-TT-TG
66 GTTTACTGTCCCAGCAGACTA-CT-TATGTTCTG
*
94318282 AGTTTACTATCC
1 TGTTTACTATCC
94318294 TAGCAGACTA
Statistics
Matches: 88, Mismatches: 18, Indels: 6
0.79 0.16 0.05
Matches are distributed among these distances:
97 79 0.90
98 6 0.07
99 3 0.03
ACGTcount: A:0.21, C:0.22, G:0.17, T:0.40
Consensus pattern (97 bp):
TGTTTACTATCCCAATGGACTATATATTTAGTGTGTACTATCCCAACGGACTACCTATATCATGT
GTTTACTGTCCCAGCAGACTACTTATGTTCTG
Found at i:94318276 original size:33 final size:33
Alignment explanation
Indices: 94318239--94318306 Score: 91
Period size: 33 Copynumber: 2.1 Consensus size: 33
94318229 AACGGACTAC
* *
94318239 CTCTATCATGTGTTTACTGTCCTAGCAGACAAT
1 CTCTATCATGAGTTTACTATCCTAGCAGACAAT
** *
94318272 CTCTATTTTGAGTTTACTATCCTAGCAGACTAT
1 CTCTATCATGAGTTTACTATCCTAGCAGACAAT
94318305 CT
1 CT
94318307 TTGTAGATGC
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.24, C:0.24, G:0.13, T:0.40
Consensus pattern (33 bp):
CTCTATCATGAGTTTACTATCCTAGCAGACAAT
Found at i:94328215 original size:40 final size:39
Alignment explanation
Indices: 94328171--94328275 Score: 122
Period size: 39 Copynumber: 2.6 Consensus size: 39
94328161 AGTGACCATA
*
94328171 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGACTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
* *
94328211 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACT-AT
1 TCCGGACTAAGCCCGAAGGCATTTGTGCGAGATACTAAT
* * *
94328249 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGACTAAG-CCCGAAGGCATTTG
94328276 AACGAGGAGC
Statistics
Matches: 58, Mismatches: 5, Indels: 4
0.87 0.07 0.06
Matches are distributed among these distances:
38 2 0.03
39 32 0.55
40 24 0.41
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (39 bp):
TCCGGACTAAGCCCGAAGGCATTTGTGCGAGATACTAAT
Found at i:94328232 original size:39 final size:40
Alignment explanation
Indices: 94328131--94328275 Score: 165
Period size: 40 Copynumber: 3.6 Consensus size: 40
94328121 TTGAATGATG
* *
94328131 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTA-AGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTATA
*
94328171 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTA-A
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTATA
*
94328210 TTCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTATA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTATA
* *
94328250 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
94328276 AACGAGGAGC
Statistics
Matches: 91, Mismatches: 7, Indels: 14
0.81 0.06 0.12
Matches are distributed among these distances:
39 34 0.37
40 46 0.51
41 10 0.11
42 1 0.01
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTATA
Found at i:94328289 original size:40 final size:39
Alignment explanation
Indices: 94328132--94328294 Score: 100
Period size: 40 Copynumber: 4.1 Consensus size: 39
94328122 TGAATGATGT
** * * *
94328132 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAG-CCCGAAGGCATTTGAAC-GAGTGACTATAA
* * ** *
94328172 CCGGACTAAGATCCGAAGGCATTTGTGCGAGAT-ACTA-ATT
1 CCGGGCTAAG-CCCGAAGGCATTTGAACGAG-TGACTATA-A
** *
94328212 CCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGCCCGAAGGCATTTGAACGAGTGACTATAA
* *
94328251 CCGGGCTATGTCCCGAAGGCATTTGAACGAG-GAGCTATAT
1 CCGGGCTAAG-CCCGAAGGCATTTGAACGAGTGA-CTATAA
94328291 CCGG
1 CCGG
94328295 TTAAATTCCA
Statistics
Matches: 103, Mismatches: 13, Indels: 14
0.79 0.10 0.11
Matches are distributed among these distances:
38 1 0.01
39 34 0.33
40 60 0.58
41 8 0.08
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.23
Consensus pattern (39 bp):
CCGGGCTAAGCCCGAAGGCATTTGAACGAGTGACTATAA
Found at i:94328294 original size:79 final size:80
Alignment explanation
Indices: 94328131--94328281 Score: 191
Period size: 79 Copynumber: 1.9 Consensus size: 80
94328121 TTGAATGATG
*
94328131 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATAACCGGACTAAGATCCGAAGGCATTT
**
94328196 GTGCGAGATACTAAT
66 GAACGAGATACTAAT
* * * * *
94328211 TCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTATAACCGGGCTATG-TCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAACCGGACTAAGAT-CCGAAGGCAT
94328273 TTGAACGAG
64 TTGAACGAG
94328282 GAGCTATATC
Statistics
Matches: 61, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
78 1 0.02
79 42 0.69
80 18 0.30
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.24
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATAACCGGACTAAGATCCGAAGGCATTT
GAACGAGATACTAAT
Found at i:94339295 original size:14 final size:15
Alignment explanation
Indices: 94339276--94339304 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
94339266 CATACCTAAC
94339276 ATGTCAAACA-ATTA
1 ATGTCAAACATATTA
94339290 ATGTCAAACATATTA
1 ATGTCAAACATATTA
94339305 GGTCAAAACT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 10 0.71
15 4 0.29
ACGTcount: A:0.48, C:0.14, G:0.07, T:0.31
Consensus pattern (15 bp):
ATGTCAAACATATTA
Found at i:94349699 original size:39 final size:40
Alignment explanation
Indices: 94349604--94349865 Score: 337
Period size: 39 Copynumber: 6.7 Consensus size: 40
94349594 TTGAATGATG
*
94349604 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTA-AGTGAC-AAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAAT
*
94349642 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTAAT
94349683 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
94349722 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* *
94349761 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
*
94349800 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGA-ATTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-TACTAAT
* *
94349839 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
94349866 AACGAGGAGC
Statistics
Matches: 203, Mismatches: 11, Indels: 17
0.88 0.05 0.07
Matches are distributed among these distances:
39 132 0.65
40 59 0.29
41 11 0.05
42 1 0.00
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.24
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
Found at i:94363994 original size:47 final size:47
Alignment explanation
Indices: 94363930--94364148 Score: 239
Period size: 47 Copynumber: 4.7 Consensus size: 47
94363920 GTGTATACGT
94363930 GCTGATGCATGTCCCAGACATGTCTTACACTGGCTAACATCATCGAG
1 GCTGATGCATGTCCCAGACATGTCTTACACTGGCTAACATCATCGAG
* * * *
94363977 GCTGATGCATGTTCCAGACACGTCTTACACAGGCTAAAATCATCGAG
1 GCTGATGCATGTCCCAGACATGTCTTACACTGGCTAACATCATCGAG
* * * *
94364024 GCCGATGCATGGCCCAGACATGTCTTACACTGGC--AC-TCACCTCTAC
1 GCTGATGCATGTCCCAGACATGTCTTACACTGGCTAACATCA--TCGAG
* * * * * *
94364070 GCCGATGCCATGTCCCAGACGTGGTCTTACACGGGCTATCATGAT-GCG
1 GCTGATG-CATGTCCCAGACAT-GTCTTACACTGGCTAACATCATCGAG
*
94364118 GCTGATGCATGTCCCAGACATATCTTACACT
1 GCTGATGCATGTCCCAGACATGTCTTACACT
94364149 AGCCATCATC
Statistics
Matches: 141, Mismatches: 24, Indels: 15
0.78 0.13 0.08
Matches are distributed among these distances:
44 3 0.02
45 1 0.01
46 18 0.13
47 97 0.69
48 18 0.13
49 1 0.01
50 1 0.01
51 2 0.01
ACGTcount: A:0.24, C:0.30, G:0.22, T:0.24
Consensus pattern (47 bp):
GCTGATGCATGTCCCAGACATGTCTTACACTGGCTAACATCATCGAG
Found at i:94364169 original size:94 final size:92
Alignment explanation
Indices: 94363880--94364192 Score: 270
Period size: 94 Copynumber: 3.3 Consensus size: 92
94363870 CTTCATTGAG
* * * * *
94363880 GCCGACGCCATGTCCCAGACATGGTCTTATACTA-GCTCTCGTGTATACGTGCTGATGCATGTCC
1 GCCGATGCCATGTCCCAGAC-TGGTCTTACAC-AGGCTATCATG-ATGCG-GCTGATGCATGTCC
* * * *
94363944 CAGACATGTCTTACACTGGCTAACATCATCGAG
62 CAGACATGTCTTACACT-GCCATCATC-TCAAC
* * ** ** * * * *
94363977 GCTGATG-CATGTTCCAGACACGTCTTACACAGGCTAAAATCATCGAGGCCGATGCATGGCCCAG
1 GCCGATGCCATGTCCCAGACTGGTCTTACACAGGCTATCATGAT-GCGGCTGATGCATGTCCCAG
* * *
94364041 ACATGTCTTACACTGGCACTCACCTCTAC
65 ACATGTCTTACACTGCCA-TCATCTCAAC
*
94364070 GCCGATGCCATGTCCCAGACGTGGTCTTACACGGGCTATCATGATGCGGCTGATGCATGTCCCAG
1 GCCGATGCCATGTCCCAGAC-TGGTCTTACACAGGCTATCATGATGCGGCTGATGCATGTCCCAG
* *
94364135 ACATATCTTACACTAGCCATCATCTCAAT
65 ACATGTCTTACACT-GCCATCATCTCAAC
* *
94364164 ACCGATGCCATGTCCCAGATTTGGTCTTA
1 GCCGATGCCATGTCCCAGA-CTGGTCTTA
94364193 TATTGGCTCT
Statistics
Matches: 170, Mismatches: 39, Indels: 17
0.75 0.17 0.08
Matches are distributed among these distances:
93 11 0.06
94 109 0.64
95 34 0.20
96 11 0.06
97 5 0.03
ACGTcount: A:0.24, C:0.30, G:0.21, T:0.26
Consensus pattern (92 bp):
GCCGATGCCATGTCCCAGACTGGTCTTACACAGGCTATCATGATGCGGCTGATGCATGTCCCAGA
CATGTCTTACACTGCCATCATCTCAAC
Found at i:94379327 original size:12 final size:12
Alignment explanation
Indices: 94379310--94379342 Score: 57
Period size: 12 Copynumber: 2.8 Consensus size: 12
94379300 GTCGTGTCGC
94379310 AAGCCGTGTGCT
1 AAGCCGTGTGCT
*
94379322 AGGCCGTGTGCT
1 AAGCCGTGTGCT
94379334 AAGCCGTGT
1 AAGCCGTGT
94379343 AACTTATTGA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.15, C:0.24, G:0.36, T:0.24
Consensus pattern (12 bp):
AAGCCGTGTGCT
Found at i:94379792 original size:14 final size:14
Alignment explanation
Indices: 94379773--94379799 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
94379763 AAAAGCGTAA
94379773 ACATACCAAAACAT
1 ACATACCAAAACAT
94379787 ACATACCAAAACA
1 ACATACCAAAACA
94379800 AGTGCTTAGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.59, C:0.30, G:0.00, T:0.11
Consensus pattern (14 bp):
ACATACCAAAACAT
Found at i:94384014 original size:50 final size:50
Alignment explanation
Indices: 94383895--94384081 Score: 198
Period size: 50 Copynumber: 3.7 Consensus size: 50
94383885 CTGGTACGCA
** * *
94383895 TAGTAGCCTGCACTTAGTACTACACATACGACC-AATTATCCGGA-ACACG
1 TAGTAGCCTGCACTTAGTACTACACACGCGACCTCACTAT-CGGATACACG
* * *
94383944 TAGTAGCCTGCACTTAGTACTACACACGTGACCTCACCATCTGATACACG
1 TAGTAGCCTGCACTTAGTACTACACACGCGACCTCACTATCGGATACACG
* * * * * * * *
94383994 TAGTAGCCTGCACTTAGTACTACACACGTGATCACAGTTTTCGGGTACGCA
1 TAGTAGCCTGCACTTAGTACTACACACGCGACCTCA-CTATCGGATACACG
*
94384045 TAGTAGCCTGCACTTAGTACTACACATGCGACCTCAC
1 TAGTAGCCTGCACTTAGTACTACACACGCGACCTCAC
94384082 AATAGATCAT
Statistics
Matches: 114, Mismatches: 21, Indels: 5
0.81 0.15 0.04
Matches are distributed among these distances:
49 33 0.29
50 42 0.37
51 39 0.34
ACGTcount: A:0.28, C:0.29, G:0.18, T:0.25
Consensus pattern (50 bp):
TAGTAGCCTGCACTTAGTACTACACACGCGACCTCACTATCGGATACACG
Found at i:94384078 original size:101 final size:99
Alignment explanation
Indices: 94383895--94384081 Score: 257
Period size: 101 Copynumber: 1.9 Consensus size: 99
94383885 CTGGTACGCA
* *
94383895 TAGTAGCCTGCACTTAGTACTACACATACGACCAATTATCCGGAACACGTAGTAGCCTGCACTTA
1 TAGTAGCCTGCACTTAGTACTACACACACGACCAATTATCCGGAACACATAGTAGCCTGCACTTA
*
94383960 GTACTACACACGTGACCTCACCATCTGATACACG
66 GTACTACACACGCGACCTCACCATCTGATACACG
** * * * * *
94383994 TAGTAGCCTGCACTTAGTACTACACACGTGATCACAGTTTTCGGGTACGCATAGTAGCCTGCACT
1 TAGTAGCCTGCACTTAGTACTACACACACGA-C-CAATTATCCGGAACACATAGTAGCCTGCACT
*
94384059 TAGTACTACACATGCGACCTCAC
64 TAGTACTACACACGCGACCTCAC
94384082 AATAGATCAT
Statistics
Matches: 75, Mismatches: 11, Indels: 2
0.85 0.12 0.02
Matches are distributed among these distances:
99 28 0.37
100 1 0.01
101 46 0.61
ACGTcount: A:0.28, C:0.29, G:0.18, T:0.25
Consensus pattern (99 bp):
TAGTAGCCTGCACTTAGTACTACACACACGACCAATTATCCGGAACACATAGTAGCCTGCACTTA
GTACTACACACGCGACCTCACCATCTGATACACG
Found at i:94384759 original size:30 final size:30
Alignment explanation
Indices: 94384725--94384784 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
94384715 CTTTAATACG
94384725 AACTTTGGCAAAATTAC-CATTTTGCCCCTA
1 AACTTTGGCAAAATTACAC-TTTTGCCCCTA
* *
94384755 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGCAAAATTACACTTTTGCCCCTA
94384785 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
30 26 0.96
31 1 0.04
ACGTcount: A:0.28, C:0.27, G:0.08, T:0.37
Consensus pattern (30 bp):
AACTTTGGCAAAATTACACTTTTGCCCCTA
Found at i:94399218 original size:50 final size:51
Alignment explanation
Indices: 94399096--94399271 Score: 189
Period size: 50 Copynumber: 3.5 Consensus size: 51
94399086 TGAGGTCGCA
* * * *
94399096 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGATAACTTCGATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAACTTAGATCACG
* ** *
94399147 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGAT-GGTTAGGTCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAACTTAGATCACG
* * * * *
94399197 TGTGTAGTACTAAGTGTAGGCTACTACGTGTAACGGATAA-TTGGTTGCA--
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAACTTAGAT-CACG
*
94399246 TGTGTAGCACTAAGTGCAGGCTACTA
1 TGTGTAGTACTAAGTGCAGGCTACTA
94399272 TGCATACCAG
Statistics
Matches: 107, Mismatches: 16, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
49 24 0.22
50 47 0.44
51 36 0.34
ACGTcount: A:0.26, C:0.18, G:0.27, T:0.30
Consensus pattern (51 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAACTTAGATCACG
Found at i:94400346 original size:73 final size:73
Alignment explanation
Indices: 94400217--94400409 Score: 264
Period size: 73 Copynumber: 2.6 Consensus size: 73
94400207 ACTTTATCAT
* *
94400217 ATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCAAAAGCTC-TTTTAATAACTGGGGCAAA
1 ATAACTGG-GGCATAAGCC-CTTTTGATAACTGGGGCAAAAGCTCTTTTTAATAACTGGGGCAAA
94400280 AGCCCTTGTA
64 AGCCCTTGTA
* * * *
94400290 ATAACTGGGGCATAAGCCCTTTTGGTAACTGGGGCACAAGCCCTTTTTAATAACTGGGGCATAAG
1 ATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCAAAAGCTCTTTTTAATAACTGGGGCAAAAG
* *
94400355 CTCTTTTA
66 CCCTTGTA
* *
94400363 ATAACTAGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCTCTTTT
1 ATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCAAAAGCTCTTTT
94400410 GCACTTCCTC
Statistics
Matches: 106, Mismatches: 12, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
72 25 0.24
73 81 0.76
ACGTcount: A:0.28, C:0.20, G:0.22, T:0.30
Consensus pattern (73 bp):
ATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCAAAAGCTCTTTTTAATAACTGGGGCAAAAG
CCCTTGTA
Found at i:94400410 original size:24 final size:24
Alignment explanation
Indices: 94400217--94400409 Score: 244
Period size: 24 Copynumber: 8.0 Consensus size: 24
94400207 ACTTTATCAT
*
94400217 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
* *
94400242 ATAACTGGGGCAAAAGCTCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
* *
94400266 ATAACTGGGGCAAAAGCCCTTGTA
1 ATAACTGGGGCATAAGCCCTTTTA
*
94400290 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
* *
94400314 GTAACTGGGGCACAAGCCCTTTTTA
1 ATAACTGGGGCATAAGCCC-TTTTA
*
94400339 ATAACTGGGGCATAAGCTCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
* *
94400363 ATAACTAGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
*
94400387 ATAACTGGGGCATAAGCTCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
94400410 GCACTTCCTC
Statistics
Matches: 147, Mismatches: 19, Indels: 5
0.86 0.11 0.03
Matches are distributed among these distances:
24 116 0.79
25 31 0.21
ACGTcount: A:0.28, C:0.20, G:0.22, T:0.30
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:94400483 original size:16 final size:16
Alignment explanation
Indices: 94400462--94400510 Score: 66
Period size: 16 Copynumber: 3.1 Consensus size: 16
94400452 TGAATACATT
94400462 ATGTGCATATCATATC
1 ATGTGCATATCATATC
94400478 ATGTGCATATCATA-C
1 ATGTGCATATCATATC
*
94400493 ATGT-CATGTGCATATC
1 ATGTGCATAT-CATATC
94400509 AT
1 AT
94400511 ACATACCATG
Statistics
Matches: 30, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
14 4 0.13
15 9 0.30
16 17 0.57
ACGTcount: A:0.31, C:0.18, G:0.14, T:0.37
Consensus pattern (16 bp):
ATGTGCATATCATATC
Found at i:94400520 original size:20 final size:20
Alignment explanation
Indices: 94400467--94400521 Score: 83
Period size: 20 Copynumber: 2.7 Consensus size: 20
94400457 ACATTATGTG
94400467 CATATCATATCATGTGCATAT
1 CATA-CATATCATGTGCATAT
*
94400488 CATACATGTCATGTGCATAT
1 CATACATATCATGTGCATAT
*
94400508 CATACATACCATGT
1 CATACATATCATGT
94400522 TTATCAAAAT
Statistics
Matches: 31, Mismatches: 3, Indels: 1
0.89 0.09 0.03
Matches are distributed among these distances:
20 27 0.87
21 4 0.13
ACGTcount: A:0.33, C:0.22, G:0.11, T:0.35
Consensus pattern (20 bp):
CATACATATCATGTGCATAT
Found at i:94407924 original size:24 final size:24
Alignment explanation
Indices: 94407731--94407923 Score: 271
Period size: 24 Copynumber: 8.0 Consensus size: 24
94407721 GCTTTATCAT
*
94407731 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
* *
94407756 ATAACTGAGGCAAAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
* *
94407780 AGAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
*
94407804 ATAACTGGGGCATAAGACCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
94407828 ATAACTGGGGCATAAGCCCTTTTTA
1 ATAACTGGGGCATAAGCCC-TTTTA
*
94407853 ATAACTGAGGCATAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
*
94407877 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
*
94407901 ATAACTGGGGCATAAGCTCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
94407924 GCACTTCCTC
Statistics
Matches: 151, Mismatches: 15, Indels: 5
0.88 0.09 0.03
Matches are distributed among these distances:
24 117 0.77
25 34 0.23
ACGTcount: A:0.29, C:0.20, G:0.21, T:0.30
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:94412734 original size:16 final size:15
Alignment explanation
Indices: 94412696--94412734 Score: 60
Period size: 15 Copynumber: 2.5 Consensus size: 15
94412686 ATTGGATTCG
*
94412696 TATCATGGATTTCTT
1 TATCTTGGATTTCTT
94412711 TATCTTGGATTTCTT
1 TATCTTGGATTTCTT
94412726 TATTCTTGG
1 TA-TCTTGG
94412735 CTTCTCTGTT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
15 16 0.73
16 6 0.27
ACGTcount: A:0.15, C:0.13, G:0.15, T:0.56
Consensus pattern (15 bp):
TATCTTGGATTTCTT
Found at i:94413461 original size:778 final size:778
Alignment explanation
Indices: 94411967--94414291 Score: 3498
Period size: 778 Copynumber: 3.0 Consensus size: 778
94411957 CTGTGTTACA
94411967 TTCGTATATGAGAGTTAAGTCAGAGGCCCTACGACCCCTCCCCCTTACCACAGTGGTGATTTATA
1 TTCGTATATGAGAGTTAAGTCAGAGGCCCTACGACCCCTCCCCCTTACCACAGTGGTGATTTATA
94412032 AGGGAAATTCCTGAGATTTAAGTTGAATGAGTTTCTAGGTGAGAAACCAAAGAGGTCAATGATGG
66 AGGGAAATTCCTGAGATTTAAGTTGAATGAGTTTCTAGGTGAGAAACCAAAGAGGTCAATGATGG
94412097 AATGGTTATAAGCATGATTAGAGATTGAGAATGGGTTGATAAGTACAGACATGAGCTAGAAAGAT
131 AATGGTTATAAGCATGATTAGAGATTGAGAATGGGTTGATAAGTACAGACATGAGCTAGAAAGAT
*
94412162 ATTGGATTGACCGAAAGATTGTTTAACTTTTGTAACATCGTAGTTAGTGAAAAAGTTAATTTTGG
196 ATCGGATTGACCGAAAGATTGTTTAACTTTTGTAACATCGTAGTTAGTGAAAAAGTTAATTTTGG
94412227 TAAAATGATCTATCCTAGTATGATGTCGAGAAATGTATTGATTGCAATTCCCCCATGAACTGGTT
261 TAAAATGATCTATCCTAGTATGATGTCGAGAAATGTATTGATTGCAATTCCCCCATGAACTGGTT
94412292 TTCTTAGTAAAGGGAATATTATGGAATTTGGGATGGTAGAAATAGTTAAAGGAATAATGTTTGAA
326 TTCTTAGTAAAGGGAATATTATGGAATTTGGGATGGTAGAAATAGTTAAAGGAATAATGTTTGAA
94412357 ATATGGAAATGTTTCCTGATCTTAACGTTAGACGAATGTCTTGTTAGTCTAATTGGATTATAATC
391 ATATGGAAATGTTTCCTGATCTTAACGTTAGACGAATGTCTTGTTAGTCTAATTGGATTATAATC
94412422 TGCATGGTTCTATTTTTCTCTGGTATTTTGTTATATTCCGCCTGTTGGGAATCGATGAGAAATTG
456 TGCATGGTTCTATTTTTCTCTGGTATTTTGTTATATTCCGCCTGTTGGGAATCGATGAGAAATTG
94412487 TGTATGGTGCCAAGATTCTATTTCTACTGATCATTGCTCTGATTGATTTTATATATATATGAGAA
521 TGTATGGTGCCAAGATTCTATTTCTACTGATCATTGCTCTGATTGATTTTATATATATATGAGAA
94412552 GCATATAGTTCCGGTCGTATTTGTTGCCAGTGGTTTGGAATGATGTTATTCTGGATTTTTTTTCT
586 GCATATAGTTCCGGTCGTATTTGTTGCCAGTGGTTTGGAATGATGTTATTCTGGATTTTTTTTCT
94412617 TTGAAAAACCATTGGGGTCTTTCATATTTTTATAAATCTGGTTCTCAGTCTTCTGACGTAGTGCT
651 TTGAAAAACCATTGGGGTCTTTCATATTTTTATAAATCTGGTTCTCAGTCTTCTGACGTAGTGCT
94412682 GTAAATTGGATTCGTATCATGGATTTCTTTATCTTGGATTTCTTTATTCTTGGCTTCTCTGTT
716 GTAAATTGGATTCGTATCATGGATTTCTTTATCTTGGATTTCTTTATTCTTGGCTTCTCTGTT
94412745 TTCGTATATGAGAGTTAAGTCAGAGGCCCTACGACCCCTCCCCCTTACCACAGTGGTGATTTATA
1 TTCGTATATGAGAGTTAAGTCAGAGGCCCTACGACCCCTCCCCCTTACCACAGTGGTGATTTATA
94412810 AGGGAAATTCCTGAGATTTAAGTTGAATGAGTTTCTAGGTGAGAAACCAAAGAGGTCAATGATGG
66 AGGGAAATTCCTGAGATTTAAGTTGAATGAGTTTCTAGGTGAGAAACCAAAGAGGTCAATGATGG
94412875 AATGGTTATAAGCATGATTAGAGATTGAGAATGGGTTGATAAGTACAGACATGAGCTAGAAAGAT
131 AATGGTTATAAGCATGATTAGAGATTGAGAATGGGTTGATAAGTACAGACATGAGCTAGAAAGAT
* * * *
94412940 ATCGGATTGACCGAAAGATTGTTTAACTTTCGCAACATCATAGTTAGCGAAAAAGTTAATTTTGG
196 ATCGGATTGACCGAAAGATTGTTTAACTTTTGTAACATCGTAGTTAGTGAAAAAGTTAATTTTGG
* *
94413005 TAAAACGATCTATCCTGGTATGATGTCGAGAAATGTATTGATTGCAATTCCCCCATGAACTGGTT
261 TAAAATGATCTATCCTAGTATGATGTCGAGAAATGTATTGATTGCAATTCCCCCATGAACTGGTT
*
94413070 TTCTTAGTGAAGGGAATATTATGGAATTTGGGATGGTAGAAATAGTTAAAGGAATAATGTTTGAA
326 TTCTTAGTAAAGGGAATATTATGGAATTTGGGATGGTAGAAATAGTTAAAGGAATAATGTTTGAA
* * *
94413135 ATAAGGAAATGTTCCCTGATCTTAACGTTAGACGAATGTGTTGTTAGTCTAATTGGATTATAATC
391 ATATGGAAATGTTTCCTGATCTTAACGTTAGACGAATGTCTTGTTAGTCTAATTGGATTATAATC
*
94413200 TGCATGGTTCTGTTTTTCTCTGGTATTTTGTTATATTCCGCCTGTTGGGAATCGATGAGAAATTG
456 TGCATGGTTCTATTTTTCTCTGGTATTTTGTTATATTCCGCCTGTTGGGAATCGATGAGAAATTG
* * * *
94413265 TGTATTGTGCCAAGATTCTATTTCAACCGATCATTGCTATGATTGATTTTATATATATATGAGAA
521 TGTATGGTGCCAAGATTCTATTTCTACTGATCATTGCTCTGATTGATTTTATATATATATGAGAA
*
94413330 GCATATAGTTCCAGTCGTATTTGTTGCCAGTGGTTTGGAATGATGTTATTCTGGATTTTTTTTCT
586 GCATATAGTTCCGGTCGTATTTGTTGCCAGTGGTTTGGAATGATGTTATTCTGGATTTTTTTTCT
94413395 TTGAAAAACCATTGGGGTCTTTCATATTTTTATAAATCTGGTTCTCAGTCTTCTGACGTAGTGCT
651 TTGAAAAACCATTGGGGTCTTTCATATTTTTATAAATCTGGTTCTCAGTCTTCTGACGTAGTGCT
94413460 GTAAATTGGATTCGTATCATGGATTTCTTTATCTTGGATTTCTTTATTCTTGGCTTCTCTG-T
716 GTAAATTGGATTCGTATCATGGATTTCTTTATCTTGGATTTCTTTATTCTTGGCTTCTCTGTT
* ** ** * *** *** * * **** ***
94413522 TTCAGATTTCTCTATCTTG-GTT-TTTC--TGGATATTTTA-TCTTGTAACTTGTTGATCA-TGG
1 TTC-G-----TATAT-GAGAGTTAAGTCAGAGGCCCTACGACCCCTCCCCCTT-ACCA-CAGTGG
* ** ** * * * * *
94413581 CTTGCATTTAGAACATGACCTT-C--AG-CTT--G-TGATTGA-TGTATA--T-A-AAGAACAAA
57 --TG-ATTTATAA-GGGAAATTCCTGAGATTTAAGTTGAATGAGTTTCTAGGTGAGAA-ACCAAA
* * * * * * * * ** *
94413634 TATGACTAT-ACCTCTGAAT--TTAT---CTTGA-TA-ATG-TGGTGAA--ACTT--TAAGT-CC
117 GAGGTCAATGA--T-GGAATGGTTATAAGCATGATTAGA-GATTGAGAATGGGTTGATAAGTACA
* * *** * ** ** * * * *
94413685 TA-ATGTG-TATGGTGGATTTC-TTTTCTCAAGTAAGTTAATCAGAGTTAATCTTTTGTAACATC
178 GACATGAGCTA-GAAAGATATCGGATTGAC-CGAAAG---AT-TG-TTTAA-CTTTTGTAACATC
94413747 GTAGTTAGTGAAAAAGTTAATTTTGGTAAAATGATCTATCCTAGTATGATGTCGAGAAATGTATT
235 GTAGTTAGTGAAAAAGTTAATTTTGGTAAAATGATCTATCCTAGTATGATGTCGAGAAATGTATT
94413812 GATTGCAATTCCCCCATGAACTGGTTTTCTTAGTAAAGGGAATATTATGGAATTTGGGATGGTAG
300 GATTGCAATTCCCCCATGAACTGGTTTTCTTAGTAAAGGGAATATTATGGAATTTGGGATGGTAG
94413877 AAATAGTTAAAGGAATAATGTTTGAAATATGGAAATGTTTCCTGATCTTAACGTTAGACGAATGT
365 AAATAGTTAAAGGAATAATGTTTGAAATATGGAAATGTTTCCTGATCTTAACGTTAGACGAATGT
94413942 CTTGTTAGTCTAATTGGATTATAATCTGCATGGTTCTATTTTTCTCTGGTATTTTGTTATATTCC
430 CTTGTTAGTCTAATTGGATTATAATCTGCATGGTTCTATTTTTCTCTGGTATTTTGTTATATTCC
94414007 GCCTGTTGGGAATCGATGAGAAATTGTGTATGGTGCCAAGATTCTATTTCTACTGATCATTGCTC
495 GCCTGTTGGGAATCGATGAGAAATTGTGTATGGTGCCAAGATTCTATTTCTACTGATCATTGCTC
*
94414072 TGATTGATTTTATATATATATGAGAAGCATATACTTCCGGTCGTATTTGTTGCCAGTGGTTTGGA
560 TGATTGATTTTATATATATATGAGAAGCATATAGTTCCGGTCGTATTTGTTGCCAGTGGTTTGGA
94414137 ATGATGTTATTCTGGATTTTTTTTCTTTGAAAAACCATTGGGGTCTTTCATATTTTTATAAATCT
625 ATGATGTTATTCTGGATTTTTTTTCTTTGAAAAACCATTGGGGTCTTTCATATTTTTATAAATCT
94414202 GGTTCTCAGTCTTCTGACGTAGTGCTGTAAATTGGATTCGTATCATGGATTTCTTTATCTTGGAT
690 GGTTCTCAGTCTTCTGACGTAGTGCTGTAAATTGGATTCGTATCATGGATTTCTTTATCTTGGAT
94414267 TTCTTTATTCTTGGCTTCTCTGTT
755 TTCTTTATTCTTGGCTTCTCTGTT
94414291 T
1 T
94414292 CAGATTTCTC
Statistics
Matches: 1430, Mismatches: 90, Indels: 63
0.90 0.06 0.04
Matches are distributed among these distances:
761 5 0.00
762 14 0.01
763 2 0.00
764 5 0.00
765 2 0.00
766 3 0.00
767 4 0.00
768 544 0.38
769 5 0.00
770 4 0.00
772 3 0.00
773 15 0.01
774 2 0.00
775 4 0.00
776 4 0.00
777 10 0.01
778 761 0.53
779 5 0.00
780 10 0.01
781 4 0.00
782 4 0.00
783 15 0.01
784 5 0.00
ACGTcount: A:0.27, C:0.13, G:0.21, T:0.39
Consensus pattern (778 bp):
TTCGTATATGAGAGTTAAGTCAGAGGCCCTACGACCCCTCCCCCTTACCACAGTGGTGATTTATA
AGGGAAATTCCTGAGATTTAAGTTGAATGAGTTTCTAGGTGAGAAACCAAAGAGGTCAATGATGG
AATGGTTATAAGCATGATTAGAGATTGAGAATGGGTTGATAAGTACAGACATGAGCTAGAAAGAT
ATCGGATTGACCGAAAGATTGTTTAACTTTTGTAACATCGTAGTTAGTGAAAAAGTTAATTTTGG
TAAAATGATCTATCCTAGTATGATGTCGAGAAATGTATTGATTGCAATTCCCCCATGAACTGGTT
TTCTTAGTAAAGGGAATATTATGGAATTTGGGATGGTAGAAATAGTTAAAGGAATAATGTTTGAA
ATATGGAAATGTTTCCTGATCTTAACGTTAGACGAATGTCTTGTTAGTCTAATTGGATTATAATC
TGCATGGTTCTATTTTTCTCTGGTATTTTGTTATATTCCGCCTGTTGGGAATCGATGAGAAATTG
TGTATGGTGCCAAGATTCTATTTCTACTGATCATTGCTCTGATTGATTTTATATATATATGAGAA
GCATATAGTTCCGGTCGTATTTGTTGCCAGTGGTTTGGAATGATGTTATTCTGGATTTTTTTTCT
TTGAAAAACCATTGGGGTCTTTCATATTTTTATAAATCTGGTTCTCAGTCTTCTGACGTAGTGCT
GTAAATTGGATTCGTATCATGGATTTCTTTATCTTGGATTTCTTTATTCTTGGCTTCTCTGTT
Found at i:94413512 original size:16 final size:15
Alignment explanation
Indices: 94413474--94413512 Score: 60
Period size: 15 Copynumber: 2.5 Consensus size: 15
94413464 ATTGGATTCG
*
94413474 TATCATGGATTTCTT
1 TATCTTGGATTTCTT
94413489 TATCTTGGATTTCTT
1 TATCTTGGATTTCTT
94413504 TATTCTTGG
1 TA-TCTTGG
94413513 CTTCTCTGTT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
15 16 0.73
16 6 0.27
ACGTcount: A:0.15, C:0.13, G:0.15, T:0.56
Consensus pattern (15 bp):
TATCTTGGATTTCTT
Found at i:94414280 original size:16 final size:15
Alignment explanation
Indices: 94414242--94414280 Score: 60
Period size: 15 Copynumber: 2.5 Consensus size: 15
94414232 ATTGGATTCG
*
94414242 TATCATGGATTTCTT
1 TATCTTGGATTTCTT
94414257 TATCTTGGATTTCTT
1 TATCTTGGATTTCTT
94414272 TATTCTTGG
1 TA-TCTTGG
94414281 CTTCTCTGTT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
15 16 0.73
16 6 0.27
ACGTcount: A:0.15, C:0.13, G:0.15, T:0.56
Consensus pattern (15 bp):
TATCTTGGATTTCTT
Found at i:94414501 original size:768 final size:767
Alignment explanation
Indices: 94412184--94414500 Score: 3469
Period size: 768 Copynumber: 3.0 Consensus size: 767
94412174 GAAAGATTGT
94412184 TTAACTTTTGTAACATCGTAGTTAGTGAAAAAGTTAATTTTGGTAAAATGATCTATCCTAGTATG
1 TTAACTTTTGTAACATCGTAGTTAGTGAAAAAGTTAATTTTGGTAAAATGATCTATCCTAGTATG
94412249 ATGTCGAGAAATGTATTGATTGCAATTCCCCCATGAACTGGTTTTCTTAGTAAAGGGAATATTAT
66 ATGTCGAGAAATGTATTGATTGCAATTCCCCCATGAACTGGTTTTCTTAGTAAAGGGAATATTAT
94412314 GGAATTTGGGATGGTAGAAATAGTTAAAGGAATAATGTTTGAAATATGGAAATGTTTCCTGATCT
131 GGAATTTGGGATGGTAGAAATAGTTAAAGGAATAATGTTTGAAATATGGAAATGTTTCCTGATCT
94412379 TAACGTTAGACGAATGTCTTGTTAGTCTAATTGGATTATAATCTGCATGGTTCTATTTTTCTCTG
196 TAACGTTAGACGAATGTCTTGTTAGTCTAATTGGATTATAATCTGCATGGTTCTATTTTTCTCTG
94412444 GTATTTTGTTATATTCCGCCTGTTGGGAATCGATGAGAAATTGTGTATGGTGCCAAGATTCTATT
261 GTATTTTGTTATATTCCGCCTGTTGGGAATCGATGAGAAATTGTGTATGGTGCCAAGATTCTATT
94412509 TCTACTGATCATTGCTCTGATTGATTTTATATATATATGAGAAGCATATAGTTCCGGTCGTATTT
326 TCTACTGATCATTGCTCTGATTGATTTTATATATATATGAGAAGCATATAGTTCCGGTCGTATTT
94412574 GTTGCCAGTGGTTTGGAATGATGTTATTCTGGATTTTTTTTCTTTGAAAAACCATTGGGGTCTTT
391 GTTGCCAGTGGTTTGGAATGATGTTATTCTGGATTTTTTTTCTTTGAAAAACCATTGGGGTCTTT
94412639 CATATTTTTATAAATCTGGTTCTCAGTCTTCTGACGTAGTGCTGTAAATTGGATTCGTATCATGG
456 CATATTTTTATAAATCTGGTTCTCAGTCTTCTGACGTAGTGCTGTAAATTGGATTCGTATCATGG
* **
94412704 ATTTCTTTATCTTGGATTTCTTTATTCTTGGCTTCTCTG--T----TTTCGTATAT-GAGAGTTA
521 ATTTCTTTATCTTGGATTTCTTTATTCTTGGCTTCTCTGTTTCAGATTTC-TCTATCTTG-GTT-
** * *** *** * * **** *** * ** **
94412762 AGTCAGAGGCCCTACGACCCCTCCCCCTT-ACCA-CAGTGG--TG-ATTTATAA-GGGAAATTCC
583 TTTC--TGGATATTTTA-TCTTGTAACTTGTTGATCA-TGGCTTGCATTTAGAACATGACCTT-C
* * * * * * * * * *
94412821 TGAGATTTAAGTTGAATGAGTTTCTAGGTGAGAA-ACCAAAGAGGTCAATGA--T-GGAATGGTT
643 --AG-CTT--G-TGATTGA-TGTATA--T-A-AAGAACAAATATGACTAT-ACCTCTGAAT--TT
* * * ** ** * *** * **
94412882 ATAAGCATGATTAGA-GATTGAGAATGGGTTGATAAGTACAGACATGAGCTA-GAAAGATATCGG
694 AT---CTTGA-TA-ATG-TGGTGAA--ACTT--TAAGT-CCTA-ATGTG-TATGGTGGATTTCTT
* * * * * *
94412945 AT-TGACCGAAAG---AT-TG-T
746 TTCTCA-AGTAAGTTAATCAGAG
* * * * * *
94412962 TTAACTTTCGCAACATCATAGTTAGCGAAAAAGTTAATTTTGGTAAAACGATCTATCCTGGTATG
1 TTAACTTTTGTAACATCGTAGTTAGTGAAAAAGTTAATTTTGGTAAAATGATCTATCCTAGTATG
*
94413027 ATGTCGAGAAATGTATTGATTGCAATTCCCCCATGAACTGGTTTTCTTAGTGAAGGGAATATTAT
66 ATGTCGAGAAATGTATTGATTGCAATTCCCCCATGAACTGGTTTTCTTAGTAAAGGGAATATTAT
* *
94413092 GGAATTTGGGATGGTAGAAATAGTTAAAGGAATAATGTTTGAAATAAGGAAATGTTCCCTGATCT
131 GGAATTTGGGATGGTAGAAATAGTTAAAGGAATAATGTTTGAAATATGGAAATGTTTCCTGATCT
* *
94413157 TAACGTTAGACGAATGTGTTGTTAGTCTAATTGGATTATAATCTGCATGGTTCTGTTTTTCTCTG
196 TAACGTTAGACGAATGTCTTGTTAGTCTAATTGGATTATAATCTGCATGGTTCTATTTTTCTCTG
*
94413222 GTATTTTGTTATATTCCGCCTGTTGGGAATCGATGAGAAATTGTGTATTGTGCCAAGATTCTATT
261 GTATTTTGTTATATTCCGCCTGTTGGGAATCGATGAGAAATTGTGTATGGTGCCAAGATTCTATT
* * * *
94413287 TCAACCGATCATTGCTATGATTGATTTTATATATATATGAGAAGCATATAGTTCCAGTCGTATTT
326 TCTACTGATCATTGCTCTGATTGATTTTATATATATATGAGAAGCATATAGTTCCGGTCGTATTT
94413352 GTTGCCAGTGGTTTGGAATGATGTTATTCTGGATTTTTTTTCTTTGAAAAACCATTGGGGTCTTT
391 GTTGCCAGTGGTTTGGAATGATGTTATTCTGGATTTTTTTTCTTTGAAAAACCATTGGGGTCTTT
94413417 CATATTTTTATAAATCTGGTTCTCAGTCTTCTGACGTAGTGCTGTAAATTGGATTCGTATCATGG
456 CATATTTTTATAAATCTGGTTCTCAGTCTTCTGACGTAGTGCTGTAAATTGGATTCGTATCATGG
94413482 ATTTCTTTATCTTGGATTTCTTTATTCTTGGCTTCTCTGTTTCAGATTTCTCTATCTTGGTTTTT
521 ATTTCTTTATCTTGGATTTCTTTATTCTTGGCTTCTCTGTTTCAGATTTCTCTATCTTGGTTTTT
94413547 CTGGATATTTTATCTTGTAACTTGTTGATCATGGCTTGCATTTAGAACATGACCTTCAGCTTGTG
586 CTGGATATTTTATCTTGTAACTTGTTGATCATGGCTTGCATTTAGAACATGACCTTCAGCTTGTG
94413612 ATTGATGTATATAAAGAACAAATATGACTATACCTCTGAATTTATCTTGATAATGTGGTGAAACT
651 ATTGATGTATATAAAGAACAAATATGACTATACCTCTGAATTTATCTTGATAATGTGGTGAAACT
94413677 TTAAGTCCTAATGTGTATGGTGGATTTCTTTTCTCAAGTAAGTTAATCAGAG
716 TTAAGTCCTAATGTGTATGGTGGATTTCTTTTCTCAAGTAAGTTAATCAGAG
94413729 TTAATCTTTTGTAACATCGTAGTTAGTGAAAAAGTTAATTTTGGTAAAATGATCTATCCTAGTAT
1 TTAA-CTTTTGTAACATCGTAGTTAGTGAAAAAGTTAATTTTGGTAAAATGATCTATCCTAGTAT
94413794 GATGTCGAGAAATGTATTGATTGCAATTCCCCCATGAACTGGTTTTCTTAGTAAAGGGAATATTA
65 GATGTCGAGAAATGTATTGATTGCAATTCCCCCATGAACTGGTTTTCTTAGTAAAGGGAATATTA
94413859 TGGAATTTGGGATGGTAGAAATAGTTAAAGGAATAATGTTTGAAATATGGAAATGTTTCCTGATC
130 TGGAATTTGGGATGGTAGAAATAGTTAAAGGAATAATGTTTGAAATATGGAAATGTTTCCTGATC
94413924 TTAACGTTAGACGAATGTCTTGTTAGTCTAATTGGATTATAATCTGCATGGTTCTATTTTTCTCT
195 TTAACGTTAGACGAATGTCTTGTTAGTCTAATTGGATTATAATCTGCATGGTTCTATTTTTCTCT
94413989 GGTATTTTGTTATATTCCGCCTGTTGGGAATCGATGAGAAATTGTGTATGGTGCCAAGATTCTAT
260 GGTATTTTGTTATATTCCGCCTGTTGGGAATCGATGAGAAATTGTGTATGGTGCCAAGATTCTAT
*
94414054 TTCTACTGATCATTGCTCTGATTGATTTTATATATATATGAGAAGCATATACTTCCGGTCGTATT
325 TTCTACTGATCATTGCTCTGATTGATTTTATATATATATGAGAAGCATATAGTTCCGGTCGTATT
94414119 TGTTGCCAGTGGTTTGGAATGATGTTATTCTGGATTTTTTTTCTTTGAAAAACCATTGGGGTCTT
390 TGTTGCCAGTGGTTTGGAATGATGTTATTCTGGATTTTTTTTCTTTGAAAAACCATTGGGGTCTT
94414184 TCATATTTTTATAAATCTGGTTCTCAGTCTTCTGACGTAGTGCTGTAAATTGGATTCGTATCATG
455 TCATATTTTTATAAATCTGGTTCTCAGTCTTCTGACGTAGTGCTGTAAATTGGATTCGTATCATG
94414249 GATTTCTTTATCTTGGATTTCTTTATTCTTGGCTTCTCTGTTTCAGATTTCTCTATCTTGGTTTT
520 GATTTCTTTATCTTGGATTTCTTTATTCTTGGCTTCTCTGTTTCAGATTTCTCTATCTTGGTTTT
94414314 TCTGGATATTTTATCTTGTAACTTGTTGATCATGGCTTGCATTTAGAACATGACCTTCAGCTTGT
585 TCTGGATATTTTATCTTGTAACTTGTTGATCATGGCTTGCATTTAGAACATGACCTTCAGCTTGT
94414379 GATTGATGTATATAAAGAACAAATATGACTATACCTCTGAATTTATCTTGATAATGTGGTGAAAC
650 GATTGATGTATATAAAGAACAAATATGACTATACCTCTGAATTTATCTTGATAATGTGGTGAAAC
94414444 TTTAAGTCCTAATGTGTATGGTGGATTTCTTTTCTCAAGTAAGTTAATCAGAG
715 TTTAAGTCCTAATGTGTATGGTGGATTTCTTTTCTCAAGTAAGTTAATCAGAG
94414497 TTAA
1 TTAA
94414501 TGTATTCAGT
Statistics
Matches: 1424, Mismatches: 89, Indels: 62
0.90 0.06 0.04
Matches are distributed among these distances:
761 2 0.00
762 15 0.01
763 4 0.00
764 5 0.00
765 2 0.00
766 3 0.00
767 4 0.00
768 756 0.53
769 3 0.00
770 4 0.00
772 3 0.00
773 15 0.01
774 2 0.00
775 4 0.00
776 4 0.00
777 6 0.00
778 544 0.38
779 5 0.00
780 11 0.01
781 4 0.00
782 4 0.00
783 15 0.01
784 9 0.01
ACGTcount: A:0.27, C:0.13, G:0.20, T:0.40
Consensus pattern (767 bp):
TTAACTTTTGTAACATCGTAGTTAGTGAAAAAGTTAATTTTGGTAAAATGATCTATCCTAGTATG
ATGTCGAGAAATGTATTGATTGCAATTCCCCCATGAACTGGTTTTCTTAGTAAAGGGAATATTAT
GGAATTTGGGATGGTAGAAATAGTTAAAGGAATAATGTTTGAAATATGGAAATGTTTCCTGATCT
TAACGTTAGACGAATGTCTTGTTAGTCTAATTGGATTATAATCTGCATGGTTCTATTTTTCTCTG
GTATTTTGTTATATTCCGCCTGTTGGGAATCGATGAGAAATTGTGTATGGTGCCAAGATTCTATT
TCTACTGATCATTGCTCTGATTGATTTTATATATATATGAGAAGCATATAGTTCCGGTCGTATTT
GTTGCCAGTGGTTTGGAATGATGTTATTCTGGATTTTTTTTCTTTGAAAAACCATTGGGGTCTTT
CATATTTTTATAAATCTGGTTCTCAGTCTTCTGACGTAGTGCTGTAAATTGGATTCGTATCATGG
ATTTCTTTATCTTGGATTTCTTTATTCTTGGCTTCTCTGTTTCAGATTTCTCTATCTTGGTTTTT
CTGGATATTTTATCTTGTAACTTGTTGATCATGGCTTGCATTTAGAACATGACCTTCAGCTTGTG
ATTGATGTATATAAAGAACAAATATGACTATACCTCTGAATTTATCTTGATAATGTGGTGAAACT
TTAAGTCCTAATGTGTATGGTGGATTTCTTTTCTCAAGTAAGTTAATCAGAG
Found at i:94419173 original size:12 final size:12
Alignment explanation
Indices: 94419156--94419181 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
94419146 TGATGTGAAG
94419156 CAATCGACATCT
1 CAATCGACATCT
94419168 CAATCGACATCT
1 CAATCGACATCT
94419180 CA
1 CA
94419182 CTTCTAGTTG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.35, C:0.35, G:0.08, T:0.23
Consensus pattern (12 bp):
CAATCGACATCT
Found at i:94422048 original size:33 final size:34
Alignment explanation
Indices: 94422003--94422076 Score: 114
Period size: 34 Copynumber: 2.2 Consensus size: 34
94421993 GTGACAGTCT
*
94422003 AGTATCAATGT-GGCCTTAGCCTATTACAATAAC
1 AGTATCAATGTGGGCCTTAGCCCATTACAATAAC
* *
94422036 AGTATCAGTGTGGGCCTTAGCCCATTACAATAAT
1 AGTATCAATGTGGGCCTTAGCCCATTACAATAAC
94422070 AGTATCA
1 AGTATCA
94422077 TAAGTGTAAT
Statistics
Matches: 37, Mismatches: 3, Indels: 1
0.90 0.07 0.02
Matches are distributed among these distances:
33 10 0.27
34 27 0.73
ACGTcount: A:0.32, C:0.20, G:0.18, T:0.30
Consensus pattern (34 bp):
AGTATCAATGTGGGCCTTAGCCCATTACAATAAC
Found at i:94424925 original size:27 final size:26
Alignment explanation
Indices: 94424895--94424998 Score: 120
Period size: 27 Copynumber: 3.8 Consensus size: 26
94424885 CTACCAAAAC
* *
94424895 AGATATTGTGACAGAGTCACCAGATAT
1 AGATATTGTGGCAGAGCCACCAGA-AT
*
94424922 AGATATTGTGGCAGAGCCACCAGAAC
1 AGATATTGTGGCAGAGCCACCAGAAT
94424948 AGATATTTGTGGC-GTAGCCACCAGAAAT
1 AGATA-TTGTGGCAG-AGCCACCAG-AAT
*
94424976 AGATATTTGTGGCATAGCCACCA
1 AGATA-TTGTGGCAGAGCCACCA
94424999 AAATGCTTCC
Statistics
Matches: 68, Mismatches: 5, Indels: 7
0.85 0.06 0.09
Matches are distributed among these distances:
26 7 0.10
27 38 0.56
28 23 0.34
ACGTcount: A:0.34, C:0.19, G:0.24, T:0.23
Consensus pattern (26 bp):
AGATATTGTGGCAGAGCCACCAGAAT
Found at i:94424978 original size:54 final size:54
Alignment explanation
Indices: 94424887--94425001 Score: 153
Period size: 54 Copynumber: 2.1 Consensus size: 54
94424877 CAGCATGGCT
* *
94424887 ACCAAAACAGATATTGTGACAGAGTCACCAGATATAGATA-TTGTGGCAGAGCC
1 ACCAAAACAGATATTGTGACAGAGCCACCAGAAATAGATATTTGTGGCAGAGCC
* * *
94424940 ACCAGAACAGATATTTGTGGC-GTAGCCACCAGAAATAGATATTTGTGGCATAGCC
1 ACCAAAACAGATA-TTGTGACAG-AGCCACCAGAAATAGATATTTGTGGCAGAGCC
94424995 ACCAAAA
1 ACCAAAA
94425002 TGCTTCCTCC
Statistics
Matches: 53, Mismatches: 6, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
53 13 0.25
54 22 0.42
55 18 0.34
ACGTcount: A:0.37, C:0.20, G:0.22, T:0.21
Consensus pattern (54 bp):
ACCAAAACAGATATTGTGACAGAGCCACCAGAAATAGATATTTGTGGCAGAGCC
Found at i:94428365 original size:40 final size:40
Alignment explanation
Indices: 94428333--94428637 Score: 430
Period size: 40 Copynumber: 7.6 Consensus size: 40
94428323 CCAGCATGAT
* * * * *
94428333 TGCTCTTCGGGACCTAGCCCGGATATAACACCAGCACAAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
** * *
94428373 TGCTCTTCGGGGTTTAGCACGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* * *
94428413 TGCTCTTCAGAACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
*
94428453 TGCTCTTCGAGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* *
94428493 TGCTCTTCGAGACTTATCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* *
94428533 TGCTCTTCGGGACTTACCCCGGATACATCACTAGCTCGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* *
94428573 TGCTCCTCGGGACTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
*
94428613 TGCTCCTCGGGACTTAGCCCGGATA
1 TGCTCTTCGGGACTTAGCCCGGATA
94428638 NNNNNNNNNN
Statistics
Matches: 239, Mismatches: 26, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
40 239 1.00
ACGTcount: A:0.26, C:0.30, G:0.21, T:0.24
Consensus pattern (40 bp):
TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
Found at i:94430598 original size:40 final size:39
Alignment explanation
Indices: 94430561--94430652 Score: 132
Period size: 39 Copynumber: 2.3 Consensus size: 39
94430551 GCTACTCGTT
*
94430561 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGG-CATAGCCCGGAAT-TAGTAACTCGCA
* *
94430601 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGCATAGCCCGGAATTAGTAACTCGCA
94430640 CAAATGCCTTCGG
1 CAAATGCCTTCGG
94430653 ATCTTAGTCC
Statistics
Matches: 48, Mismatches: 3, Indels: 3
0.89 0.06 0.06
Matches are distributed among these distances:
39 33 0.69
40 15 0.31
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (39 bp):
CAAATGCCTTCGGGCATAGCCCGGAATTAGTAACTCGCA
Found at i:94430632 original size:39 final size:40
Alignment explanation
Indices: 94430542--94430705 Score: 176
Period size: 40 Copynumber: 4.1 Consensus size: 40
94430532 CGGAATTTAA
** *
94430542 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
*
94430582 CCGGTTATAGTAACTCGCACAAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
94430621 CCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
94430661 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
94430701 CCGGA
1 CCGGA
94430706 CATCATTCAA
Statistics
Matches: 105, Mismatches: 12, Indels: 14
0.80 0.09 0.11
Matches are distributed among these distances:
38 3 0.03
39 32 0.30
40 58 0.55
41 12 0.11
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:94431688 original size:85 final size:85
Alignment explanation
Indices: 94431592--94431748 Score: 314
Period size: 85 Copynumber: 1.8 Consensus size: 85
94431582 TATCATCTCC
94431592 TCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTTTAGCCATAACATCTTGTCCACC
1 TCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTTTAGCCATAACATCTTGTCCACC
94431657 CATGCTCTTTATTTTATTAA
66 CATGCTCTTTATTTTATTAA
94431677 TCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTTTAGCCATAACATCTTGTCCACC
1 TCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTTTAGCCATAACATCTTGTCCACC
94431742 CATGCTC
66 CATGCTC
94431749 ATGGCCGGCC
Statistics
Matches: 72, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
85 72 1.00
ACGTcount: A:0.27, C:0.28, G:0.09, T:0.36
Consensus pattern (85 bp):
TCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTTTAGCCATAACATCTTGTCCACC
CATGCTCTTTATTTTATTAA
Found at i:94436509 original size:14 final size:14
Alignment explanation
Indices: 94436490--94436519 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
94436480 AAGATAGAAT
*
94436490 GATGATGGATGAGG
1 GATGATGAATGAGG
94436504 GATGATGAATGAGG
1 GATGATGAATGAGG
94436518 GA
1 GA
94436520 ATGAAGGGGT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.33, C:0.00, G:0.47, T:0.20
Consensus pattern (14 bp):
GATGATGAATGAGG
Found at i:94437205 original size:12 final size:12
Alignment explanation
Indices: 94437190--94437215 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
94437180 GAATTTAAGT
94437190 AAAAAGGCGATA
1 AAAAAGGCGATA
94437202 AAAAAGGCGATA
1 AAAAAGGCGATA
94437214 AA
1 AA
94437216 TTACATAGGA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.62, C:0.08, G:0.23, T:0.08
Consensus pattern (12 bp):
AAAAAGGCGATA
Found at i:94438464 original size:30 final size:30
Alignment explanation
Indices: 94438429--94438512 Score: 141
Period size: 30 Copynumber: 2.8 Consensus size: 30
94438419 ATTTTCGAAC
*
94438429 CTAGGGGTAAAATGGTCATTTTGCAAAAGT
1 CTAGGGGCAAAATGGTCATTTTGCAAAAGT
* *
94438459 TTAGGGGCAAAATGGTCATTTTACAAAAGT
1 CTAGGGGCAAAATGGTCATTTTGCAAAAGT
94438489 CTAGGGGCAAAATGGTCATTTTGC
1 CTAGGGGCAAAATGGTCATTTTGC
94438513 CCAAATATAG
Statistics
Matches: 49, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
30 49 1.00
ACGTcount: A:0.32, C:0.12, G:0.26, T:0.30
Consensus pattern (30 bp):
CTAGGGGCAAAATGGTCATTTTGCAAAAGT
Found at i:94448333 original size:28 final size:28
Alignment explanation
Indices: 94448302--94448364 Score: 83
Period size: 28 Copynumber: 2.2 Consensus size: 28
94448292 TCGATATTTT
94448302 GCACACTAAGTG-TCATTCTCAATATCTC
1 GCACACTAAGTGCT-ATTCTCAATATCTC
* *
94448330 GCACGCTAAGTGCTATTCTCAATATTTC
1 GCACACTAAGTGCTATTCTCAATATCTC
*
94448358 GTACACT
1 GCACACT
94448365 GAGTACCATA
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
28 29 0.97
29 1 0.03
ACGTcount: A:0.27, C:0.27, G:0.13, T:0.33
Consensus pattern (28 bp):
GCACACTAAGTGCTATTCTCAATATCTC
Found at i:94455016 original size:26 final size:26
Alignment explanation
Indices: 94454987--94455046 Score: 66
Period size: 28 Copynumber: 2.2 Consensus size: 26
94454977 TCCCTTTGAA
* * *
94454987 TCATTCGATATTTTGCACACTAAGTG
1 TCATTCAATATCTCGCACACTAAGTG
94455013 TCATTCTCAATATCTCGCACACTAAGTG
1 TCA-T-TCAATATCTCGCACACTAAGTG
*
94455041 CCATTC
1 TCATTC
94455047 TCAATATTTC
Statistics
Matches: 28, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
26 5 0.18
27 2 0.07
28 21 0.75
ACGTcount: A:0.27, C:0.27, G:0.12, T:0.35
Consensus pattern (26 bp):
TCATTCAATATCTCGCACACTAAGTG
Found at i:94455032 original size:28 final size:28
Alignment explanation
Indices: 94455001--94455072 Score: 99
Period size: 28 Copynumber: 2.6 Consensus size: 28
94454991 TCGATATTTT
*
94455001 GCACACTAAGTGTCATTCTCAATATCTC
1 GCACACTAAGTGCCATTCTCAATATCTC
*
94455029 GCACACTAAGTGCCATTCTCAATATTTC
1 GCACACTAAGTGCCATTCTCAATATCTC
* * *
94455057 GTACACTGAGTACCAT
1 GCACACTAAGTGCCAT
94455073 ATTTGATTGC
Statistics
Matches: 39, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 39 1.00
ACGTcount: A:0.29, C:0.28, G:0.12, T:0.31
Consensus pattern (28 bp):
GCACACTAAGTGCCATTCTCAATATCTC
Found at i:94457628 original size:42 final size:42
Alignment explanation
Indices: 94457526--94457685 Score: 144
Period size: 43 Copynumber: 3.7 Consensus size: 42
94457516 TATGTGTTCT
* * * * *
94457526 CGTGTAAGACCACGTCTAGGACGTTGGCATCGACT-TATGATTTA
1 CGTGTAAGACCATGTCTGGGACATTGGCAT-TA-TATTTGA-TTA
* *
94457570 CGTGTAAGACCATGTCTGGGACATTGGCATTGTATTTGATTT
1 CGTGTAAGACCATGTCTGGGACATTGGCATTATATTTGATTA
* * *
94457612 TGTGTAAGACTC-TGTCTGGGATAGTGGCATCTATATTTGATTA
1 CGTGTAAGAC-CATGTCTGGGACATTGGCAT-TATATTTGATTA
* * *
94457655 CATGTAAGACCACGTTTGGGACATTGGCATT
1 CGTGTAAGACCATGTCTGGGACATTGGCATT
94457686 TTACTAGCTT
Statistics
Matches: 94, Mismatches: 18, Indels: 10
0.77 0.15 0.08
Matches are distributed among these distances:
42 30 0.32
43 37 0.39
44 27 0.29
ACGTcount: A:0.24, C:0.16, G:0.26, T:0.34
Consensus pattern (42 bp):
CGTGTAAGACCATGTCTGGGACATTGGCATTATATTTGATTA
Found at i:94462386 original size:14 final size:14
Alignment explanation
Indices: 94462363--94462392 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
94462353 TTAGAATCAG
94462363 ATTAAAACATATTT
1 ATTAAAACATATTT
*
94462377 ATTAACACATATTT
1 ATTAAAACATATTT
94462391 AT
1 AT
94462393 GAGCTAAAAC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.47, C:0.10, G:0.00, T:0.43
Consensus pattern (14 bp):
ATTAAAACATATTT
Found at i:94471308 original size:18 final size:17
Alignment explanation
Indices: 94471282--94471316 Score: 52
Period size: 17 Copynumber: 2.0 Consensus size: 17
94471272 CACTACTAGA
94471282 ATGAATTTTGATTAATAT
1 ATGAATTTT-ATTAATAT
*
94471300 ATGATTTTTATTAATAT
1 ATGAATTTTATTAATAT
94471317 GTCTTGAATT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 8 0.50
18 8 0.50
ACGTcount: A:0.37, C:0.00, G:0.09, T:0.54
Consensus pattern (17 bp):
ATGAATTTTATTAATAT
Found at i:94476560 original size:16 final size:16
Alignment explanation
Indices: 94476541--94476603 Score: 65
Period size: 16 Copynumber: 3.9 Consensus size: 16
94476531 GCTGGAATAC
94476541 CGAAAAGCCAAAATGT
1 CGAAAAGCCAAAATGT
* * *
94476557 CGAAATGTCGAAATGT
1 CGAAAAGCCAAAATGT
* *
94476573 CGAAAAGTCGAAAA-GG
1 CGAAAAG-CCAAAATGT
94476589 CGAAAAGCCAAAATG
1 CGAAAAGCCAAAATG
94476604 CCAAAAAACT
Statistics
Matches: 36, Mismatches: 9, Indels: 4
0.73 0.18 0.08
Matches are distributed among these distances:
15 5 0.14
16 28 0.78
17 3 0.08
ACGTcount: A:0.48, C:0.16, G:0.24, T:0.13
Consensus pattern (16 bp):
CGAAAAGCCAAAATGT
Found at i:94476564 original size:8 final size:8
Alignment explanation
Indices: 94476551--94476585 Score: 61
Period size: 8 Copynumber: 4.4 Consensus size: 8
94476541 CGAAAAGCCA
94476551 AAATGTCG
1 AAATGTCG
94476559 AAATGTCG
1 AAATGTCG
94476567 AAATGTCG
1 AAATGTCG
*
94476575 AAAAGTCG
1 AAATGTCG
94476583 AAA
1 AAA
94476586 AGGCGAAAAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
8 26 1.00
ACGTcount: A:0.46, C:0.11, G:0.23, T:0.20
Consensus pattern (8 bp):
AAATGTCG
Found at i:94476568 original size:24 final size:24
Alignment explanation
Indices: 94476541--94476603 Score: 74
Period size: 24 Copynumber: 2.6 Consensus size: 24
94476531 GCTGGAATAC
* *
94476541 CGAAAAGCCAAAATGTCGAAATGT
1 CGAAAAGCCAAAATGTCGAAAAGG
* *
94476565 CGAAATGTCGAAAA-GTCGAAAAGG
1 CGAAAAG-CCAAAATGTCGAAAAGG
94476589 CGAAAAGCCAAAATG
1 CGAAAAGCCAAAATG
94476604 CCAAAAAACT
Statistics
Matches: 31, Mismatches: 6, Indels: 4
0.76 0.15 0.10
Matches are distributed among these distances:
23 5 0.16
24 21 0.68
25 5 0.16
ACGTcount: A:0.48, C:0.16, G:0.24, T:0.13
Consensus pattern (24 bp):
CGAAAAGCCAAAATGTCGAAAAGG
Found at i:94476586 original size:8 final size:8
Alignment explanation
Indices: 94476541--94476595 Score: 58
Period size: 8 Copynumber: 6.9 Consensus size: 8
94476531 GCTGGAATAC
94476541 CGAAAAG-
1 CGAAAAGT
*
94476548 CCAAAATGT
1 CGAAAA-GT
*
94476557 CGAAATGT
1 CGAAAAGT
*
94476565 CGAAATGT
1 CGAAAAGT
94476573 CGAAAAGT
1 CGAAAAGT
*
94476581 CGAAAAGG
1 CGAAAAGT
94476589 CGAAAAG
1 CGAAAAG
94476596 CCAAAATGCC
Statistics
Matches: 41, Mismatches: 5, Indels: 3
0.84 0.10 0.06
Matches are distributed among these distances:
7 5 0.12
8 32 0.78
9 4 0.10
ACGTcount: A:0.47, C:0.15, G:0.25, T:0.13
Consensus pattern (8 bp):
CGAAAAGT
Found at i:94476882 original size:29 final size:27
Alignment explanation
Indices: 94476840--94476946 Score: 90
Period size: 29 Copynumber: 3.8 Consensus size: 27
94476830 ATAATATGAT
* * *
94476840 TTGGACCTAATGGGCCATATGAAGGTGAA
1 TTGGGCCTAGTGGGCCATATGAA--TAAA
* *
94476869 TTGGGCCTAGTGGGCCGTAAGAATATTAA
1 TTGGGCCTAGTGGGCCATATGAATA--AA
*
94476898 TTGGGCC-AGATGGGCCATTTGAATAAGA
1 TTGGGCCTAG-TGGGCCATATGAATAA-A
*
94476926 TTGGGCCTAGTGGGCTATATG
1 TTGGGCCTAGTGGGCCATATG
94476947 CACGTATGTA
Statistics
Matches: 63, Mismatches: 10, Indels: 11
0.75 0.12 0.13
Matches are distributed among these distances:
27 2 0.03
28 19 0.30
29 42 0.67
ACGTcount: A:0.26, C:0.14, G:0.33, T:0.27
Consensus pattern (27 bp):
TTGGGCCTAGTGGGCCATATGAATAAA
Found at i:94479868 original size:34 final size:34
Alignment explanation
Indices: 94479825--94479894 Score: 140
Period size: 34 Copynumber: 2.1 Consensus size: 34
94479815 TGGGCAAATC
94479825 TGTAGTCGAATTTGGGTTGACTTGGTCTTCAATT
1 TGTAGTCGAATTTGGGTTGACTTGGTCTTCAATT
94479859 TGTAGTCGAATTTGGGTTGACTTGGTCTTCAATT
1 TGTAGTCGAATTTGGGTTGACTTGGTCTTCAATT
94479893 TG
1 TG
94479895 GACAGTTTTT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 36 1.00
ACGTcount: A:0.17, C:0.11, G:0.27, T:0.44
Consensus pattern (34 bp):
TGTAGTCGAATTTGGGTTGACTTGGTCTTCAATT
Found at i:94480967 original size:21 final size:22
Alignment explanation
Indices: 94480943--94480984 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
94480933 TAATAATTTA
94480943 TTTCAA-GAA-ATATATCATATC
1 TTTCAATGAATATATA-CATATC
94480964 TTTCAATGAATATATACATAT
1 TTTCAATGAATATATACATAT
94480985 ATACTTAAGT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
21 6 0.32
22 8 0.42
23 5 0.26
ACGTcount: A:0.43, C:0.12, G:0.05, T:0.40
Consensus pattern (22 bp):
TTTCAATGAATATATACATATC
Found at i:94481347 original size:74 final size:74
Alignment explanation
Indices: 94481213--94481398 Score: 210
Period size: 74 Copynumber: 2.5 Consensus size: 74
94481203 ATAACTCGAT
* * * **
94481213 AAATAATTAGTGAGCCTAGCTCTAGTTGGATATACCAACGGTATATGCGTCCAACACTAGTCCAA
1 AAATAAATAGTGAGCCCAGCTCTAGTTGGATATACCAACGGTATATACACCCAACACTAGTCCAA
94481278 TAAACCAAA
66 TAAACCAAA
* *** ***
94481287 AAATAAATAGTGAGCCCAGCTCTAGTTGGATATACCAACGGTATTTACACCCAGTTCTAGTCGGT
1 AAATAAATAGTGAGCCCAGCTCTAGTTGGATATACCAACGGTATATACACCCAACACTAGTCCAA
** *
94481352 TAAACTGAC
66 TAAACCAAA
* * *
94481361 GAATAAATAGTGAGCCCAACTCTAGTTGGATTTACCAA
1 AAATAAATAGTGAGCCCAGCTCTAGTTGGATATACCAA
94481399 TAAAAATTGC
Statistics
Matches: 94, Mismatches: 18, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
74 94 1.00
ACGTcount: A:0.35, C:0.21, G:0.18, T:0.26
Consensus pattern (74 bp):
AAATAAATAGTGAGCCCAGCTCTAGTTGGATATACCAACGGTATATACACCCAACACTAGTCCAA
TAAACCAAA
Found at i:94481421 original size:74 final size:74
Alignment explanation
Indices: 94481268--94481441 Score: 179
Period size: 74 Copynumber: 2.4 Consensus size: 74
94481258 TGCGTCCAAC
* * ** * *** *
94481268 ACTAGTCCAATAAACCAAAAAATAAATAGTGAGCCCAGCTCTAGTTGGATATACCAACGGTATTT
1 ACTAGTCGAATAAACCGACGAATAAATAGTGAGCCCAACTCTAGTTGGATATACCAACAAAAATT
94481333 ACACCCAGT
66 ACACCCAGT
* ** * * *
94481342 TCTAGTCGGTTAAACTGACGAATAAATAGTGAGCCCAACTCTAGTTGGATTTACCAATAAAAATT
1 ACTAGTCGAATAAACCGACGAATAAATAGTGAGCCCAACTCTAGTTGGATATACCAACAAAAATT
*
94481407 GCACCCA-T
66 ACACCCAGT
*
94481415 CACTAGTCGAATAAACCGACGACTAAA
1 -ACTAGTCGAATAAACCGACGAATAAA
94481442 CAGTTATTTA
Statistics
Matches: 78, Mismatches: 21, Indels: 2
0.77 0.21 0.02
Matches are distributed among these distances:
73 1 0.01
74 77 0.99
ACGTcount: A:0.39, C:0.22, G:0.16, T:0.24
Consensus pattern (74 bp):
ACTAGTCGAATAAACCGACGAATAAATAGTGAGCCCAACTCTAGTTGGATATACCAACAAAAATT
ACACCCAGT
Found at i:94484541 original size:16 final size:16
Alignment explanation
Indices: 94484520--94484560 Score: 64
Period size: 16 Copynumber: 2.6 Consensus size: 16
94484510 ATCGACAAAA
94484520 GCTGAAAAGTCGAAAT
1 GCTGAAAAGTCGAAAT
*
94484536 GCTGAAAAGTTGAAAT
1 GCTGAAAAGTCGAAAT
*
94484552 GCTAAAAAG
1 GCTGAAAAG
94484561 CCAAAAGTTT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
16 23 1.00
ACGTcount: A:0.46, C:0.10, G:0.24, T:0.20
Consensus pattern (16 bp):
GCTGAAAAGTCGAAAT
Found at i:94484810 original size:28 final size:29
Alignment explanation
Indices: 94484778--94484855 Score: 88
Period size: 29 Copynumber: 2.7 Consensus size: 29
94484768 GTGAGCATGA
* *
94484778 ATAT-AAAGTGGTTTGGGCCTAACGGGCC
1 ATATAAAAGTGATTTGGGCCTAACAGGCC
*
94484806 ATATAAAAGTGATTTGGGCCTAATAGGCC
1 ATATAAAAGTGATTTGGGCCTAACAGGCC
* *
94484835 ATATGAATA-TGAATTGGGCCT
1 ATAT-AAAAGTGATTTGGGCCT
94484856 GATGGGCCAT
Statistics
Matches: 43, Mismatches: 5, Indels: 3
0.84 0.10 0.06
Matches are distributed among these distances:
28 4 0.09
29 36 0.84
30 3 0.07
ACGTcount: A:0.31, C:0.14, G:0.27, T:0.28
Consensus pattern (29 bp):
ATATAAAAGTGATTTGGGCCTAACAGGCC
Found at i:94484821 original size:29 final size:29
Alignment explanation
Indices: 94484790--94484894 Score: 113
Period size: 29 Copynumber: 3.6 Consensus size: 29
94484780 ATAAAGTGGT
* *
94484790 TTGGGCCTAACGGGCCATATAAAAGTGAT
1 TTGGGCCTAATGGGCCATATAAAAGTGAA
* *
94484819 TTGGGCCTAATAGGCCATATGAATA-TGAA
1 TTGGGCCTAATGGGCCATAT-AAAAGTGAA
* ** *
94484848 TTGGGCCTGATGGGCCATATTGATGTGAA
1 TTGGGCCTAATGGGCCATATAAAAGTGAA
*
94484877 TTGGGCCTGATGGGCCAT
1 TTGGGCCTAATGGGCCAT
94484895 GTGCATGAGA
Statistics
Matches: 64, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
29 61 0.95
30 3 0.05
ACGTcount: A:0.26, C:0.16, G:0.30, T:0.28
Consensus pattern (29 bp):
TTGGGCCTAATGGGCCATATAAAAGTGAA
Found at i:94489429 original size:70 final size:70
Alignment explanation
Indices: 94489347--94489486 Score: 280
Period size: 70 Copynumber: 2.0 Consensus size: 70
94489337 AATGTAGTAT
94489347 TAAAAGAAAACTATAGCTTAGAAAATCCATGTTCCAATTCTTATAATTACAACGCACGAATTTAA
1 TAAAAGAAAACTATAGCTTAGAAAATCCATGTTCCAATTCTTATAATTACAACGCACGAATTTAA
94489412 TAATC
66 TAATC
94489417 TAAAAGAAAACTATAGCTTAGAAAATCCATGTTCCAATTCTTATAATTACAACGCACGAATTTAA
1 TAAAAGAAAACTATAGCTTAGAAAATCCATGTTCCAATTCTTATAATTACAACGCACGAATTTAA
94489482 TAATC
66 TAATC
94489487 CAAACAATAA
Statistics
Matches: 70, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
70 70 1.00
ACGTcount: A:0.44, C:0.17, G:0.09, T:0.30
Consensus pattern (70 bp):
TAAAAGAAAACTATAGCTTAGAAAATCCATGTTCCAATTCTTATAATTACAACGCACGAATTTAA
TAATC
Found at i:94490469 original size:28 final size:29
Alignment explanation
Indices: 94490435--94490520 Score: 113
Period size: 28 Copynumber: 3.0 Consensus size: 29
94490425 AATCTCTTTC
94490435 ATATGGCCCATTAGGCCC-AATCACATTT
1 ATATGGCCCATTAGGCCCAAATCACATTT
* * *
94490463 ATGTGGCCCATTAGGCCCAAATCATATTC
1 ATATGGCCCATTAGGCCCAAATCACATTT
* *
94490492 ATATGG-TCACTAGGCCCAAATCACATTT
1 ATATGGCCCATTAGGCCCAAATCACATTT
94490520 A
1 A
94490521 CAGTCATGCT
Statistics
Matches: 49, Mismatches: 8, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
28 36 0.73
29 13 0.27
ACGTcount: A:0.30, C:0.27, G:0.15, T:0.28
Consensus pattern (29 bp):
ATATGGCCCATTAGGCCCAAATCACATTT
Found at i:94494920 original size:28 final size:28
Alignment explanation
Indices: 94494887--94494973 Score: 122
Period size: 28 Copynumber: 3.1 Consensus size: 28
94494877 CAAACCTTTA
* *
94494887 TATATGGCCCACTAGGCCCAATCTC-TT
1 TATATGGCCCATTAGGCCCAATCACATT
94494914 TCATATGGCCCATTAGGCCCAATCACATT
1 T-ATATGGCCCATTAGGCCCAATCACATT
*
94494943 TATGTGGCCCATTAGGCCCAAATCACATT
1 TATATGGCCCATTAGGCCC-AATCACATT
94494972 TA
1 TA
94494974 CAGTCATGCT
Statistics
Matches: 54, Mismatches: 3, Indels: 4
0.89 0.05 0.07
Matches are distributed among these distances:
27 1 0.02
28 39 0.72
29 14 0.26
ACGTcount: A:0.26, C:0.30, G:0.15, T:0.29
Consensus pattern (28 bp):
TATATGGCCCATTAGGCCCAATCACATT
Found at i:94495211 original size:16 final size:17
Alignment explanation
Indices: 94495187--94495229 Score: 54
Period size: 16 Copynumber: 2.6 Consensus size: 17
94495177 GTAGCTAAAC
*
94495187 TTTCAGCTTTTC-GGCA
1 TTTCGGCTTTTCTGGCA
94495203 TTTCGGC-TTTCTGGCA
1 TTTCGGCTTTTCTGGCA
*
94495219 TTTCGACTTTT
1 TTTCGGCTTTT
94495230 GCCGATCTAC
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
15 4 0.17
16 16 0.70
17 3 0.13
ACGTcount: A:0.09, C:0.23, G:0.19, T:0.49
Consensus pattern (17 bp):
TTTCGGCTTTTCTGGCA
Found at i:94498927 original size:21 final size:19
Alignment explanation
Indices: 94498890--94498929 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 19
94498880 CCCCTGTTCC
*
94498890 AACTTTAAAAAATAATTAA
1 AACTTTAAAAAAAAATTAA
94498909 AACTTGTAAAAAACAAATTAA
1 AACTT-TAAAAAA-AAATTAA
94498930 GAAATGTAGT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 5 0.28
20 7 0.39
21 6 0.33
ACGTcount: A:0.62, C:0.07, G:0.03, T:0.28
Consensus pattern (19 bp):
AACTTTAAAAAAAAATTAA
Found at i:94505951 original size:66 final size:67
Alignment explanation
Indices: 94505822--94505951 Score: 174
Period size: 66 Copynumber: 1.9 Consensus size: 67
94505812 GGGATGTATC
*
94505822 CCATGTAGACAAGAGAGCTACGTGAGAGATAAATGTAGCTAGGTCGCATGAGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTAC--G-GAGATAAATG-AGCTAGGTCGCATGAGTGATACCAAGTGA
94505887 AGGACA
62 AGGACA
* *
94505893 CCATGTAGACAAGAGAGCTAC-GAGATAAATCG-GCTAGGTCGCATGAGTGGTACTAAGTG
1 CCATGTAGACAAGAGAGCTACGGAGATAAAT-GAGCTAGGTCGCATGAGTGATACCAAGTG
94505952 TTCACCATGT
Statistics
Matches: 55, Mismatches: 3, Indels: 7
0.85 0.05 0.11
Matches are distributed among these distances:
66 24 0.44
67 9 0.16
68 1 0.02
71 21 0.38
ACGTcount: A:0.34, C:0.16, G:0.30, T:0.20
Consensus pattern (67 bp):
CCATGTAGACAAGAGAGCTACGGAGATAAATGAGCTAGGTCGCATGAGTGATACCAAGTGAAGGA
CA
Found at i:94510092 original size:28 final size:30
Alignment explanation
Indices: 94510019--94510100 Score: 125
Period size: 29 Copynumber: 2.8 Consensus size: 30
94510009 GAATATAATA
* *
94510019 TGATTTGAGCCTAATGGGCCATA-AGAATG
1 TGATTTGGGCCTAGTGGGCCATATAGAATG
94510048 TGATTTGGGCCTAGTGGGCCATATA-AATG
1 TGATTTGGGCCTAGTGGGCCATATAGAATG
94510077 TGA-TTGGGCCTAGTGGGCCATATA
1 TGATTTGGGCCTAGTGGGCCATATA
94510101 CAGGTATTTG
Statistics
Matches: 50, Mismatches: 2, Indels: 3
0.91 0.04 0.05
Matches are distributed among these distances:
28 21 0.42
29 28 0.56
30 1 0.02
ACGTcount: A:0.26, C:0.15, G:0.30, T:0.29
Consensus pattern (30 bp):
TGATTTGGGCCTAGTGGGCCATATAGAATG
Found at i:94513019 original size:16 final size:16
Alignment explanation
Indices: 94512998--94513030 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
94512988 TTGTAACGCC
94512998 CCAAAAATCCCGAAAT
1 CCAAAAATCCCGAAAT
*
94513014 CCAAAAATCTCGAAAT
1 CCAAAAATCCCGAAAT
94513030 C
1 C
94513031 TTGAATTTTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.48, C:0.30, G:0.06, T:0.15
Consensus pattern (16 bp):
CCAAAAATCCCGAAAT
Found at i:94514567 original size:28 final size:30
Alignment explanation
Indices: 94514493--94514576 Score: 129
Period size: 29 Copynumber: 2.9 Consensus size: 30
94514483 GAATATAATA
94514493 TGATTTGGGCCTAATGGGCCATA-AGAATG
1 TGATTTGGGCCTAATGGGCCATATAGAATG
*
94514522 TGATTTGGGCCTAATGGGTCATATA-AATG
1 TGATTTGGGCCTAATGGGCCATATAGAATG
*
94514551 TGA-TTGGGCCTAGTGGGCCATATAGA
1 TGATTTGGGCCTAATGGGCCATATAGA
94514577 GGTATATGAA
Statistics
Matches: 50, Mismatches: 3, Indels: 4
0.88 0.05 0.07
Matches are distributed among these distances:
28 19 0.38
29 30 0.60
30 1 0.02
ACGTcount: A:0.26, C:0.13, G:0.31, T:0.30
Consensus pattern (30 bp):
TGATTTGGGCCTAATGGGCCATATAGAATG
Found at i:94519315 original size:39 final size:40
Alignment explanation
Indices: 94519213--94519398 Score: 175
Period size: 40 Copynumber: 4.7 Consensus size: 40
94519203 TCGAAAGATA
* * *
94519213 TCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTATAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTA-AT
* *
94519255 T-CTGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAT
* * *
94519294 TCCGGGCTAAG-CCCGAAGGCATTGGAGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
* * **
94519333 TCTGGGTTAAGTCCCGAAGGCATTTGCACGAGTTACTGTAA-
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTAC--TAAT
*
94519374 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
94519399 AGGGTAGCTA
Statistics
Matches: 120, Mismatches: 18, Indels: 14
0.79 0.12 0.09
Matches are distributed among these distances:
39 36 0.30
40 57 0.47
41 22 0.18
42 5 0.04
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.27
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
Found at i:94520978 original size:258 final size:257
Alignment explanation
Indices: 94520520--94521035 Score: 978
Period size: 258 Copynumber: 2.0 Consensus size: 257
94520510 CGATCCCGAC
94520520 CGAGCGGTAGCTGATGATCTTGAGAGTGTAGCGCCTGCTCCCGCACAAGGGACAGCGCCGGCGGA
1 CGAGCGGTAGCTGATGATCTTGAGAGTGTAGCGCCTGCTCCCGCACAAGGGACAGCGCCGGCGGA
94520585 CTCTCAACCTATTGCTAGTAATCCGAATGATGAAGCTAGACAAGCTTTCTATAGCGTGATGAATG
66 CTCTCAACCTATTGCTAGTAATCCGAATGATGAAGCTAGACAAGCTTTCTATAGCGTGATGAATG
94520650 ATTGGTTCAACCAATACATTCGAACTAATACGGCTGTTCCACAACCTCCATTCCCGACAAACACC
131 ATTGGTTCAACCAATACATTCGAACTAATACGGCTGTTCCACAACCTCCATTCCCGACAAACACC
*
94520715 ACCCCCGCACCTACAATACCTCCGGTAACTGACCAAATAAGGTCAAATAAGCCCCCAGTTGA
196 ACCCCCGCACCTACAATACCTCCGGCAACTGACCAAATAAGGTCAAATAAGCCCCCAGTTGA
94520777 CNGAGCGGTAGCTGATGATCTTGAGAGTGTAGCGCCTGCTCCCGCACAAGGGACAGCGCCGGCGG
1 C-GAGCGGTAGCTGATGATCTTGAGAGTGTAGCGCCTGCTCCCGCACAAGGGACAGCGCCGGCGG
94520842 ACTCTCAACCTATTGCTAGTAATCCGAATGATGAAGCTAGACAAGCTTTCTATAGCGTGATGAAT
65 ACTCTCAACCTATTGCTAGTAATCCGAATGATGAAGCTAGACAAGCTTTCTATAGCGTGATGAAT
* **
94520907 GATTGGTTCAACCAATACATTCGAACTAATACGGCTGTTCCACAACCTCCATTCCCGACTAATGC
130 GATTGGTTCAACCAATACATTCGAACTAATACGGCTGTTCCACAACCTCCATTCCCGACAAACAC
*
94520972 CACCCCCGCACCTACAATACCTCCGGCAACTGACCAAATAAGGTCAAATAAGCCCCGAGTTGA
195 CACCCCCGCACCTACAATACCTCCGGCAACTGACCAAATAAGGTCAAATAAGCCCCCAGTTGA
94521035 C
1 C
94521036 AGAATCTGAA
Statistics
Matches: 253, Mismatches: 5, Indels: 1
0.98 0.02 0.00
Matches are distributed among these distances:
257 1 0.00
258 252 1.00
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (257 bp):
CGAGCGGTAGCTGATGATCTTGAGAGTGTAGCGCCTGCTCCCGCACAAGGGACAGCGCCGGCGGA
CTCTCAACCTATTGCTAGTAATCCGAATGATGAAGCTAGACAAGCTTTCTATAGCGTGATGAATG
ATTGGTTCAACCAATACATTCGAACTAATACGGCTGTTCCACAACCTCCATTCCCGACAAACACC
ACCCCCGCACCTACAATACCTCCGGCAACTGACCAAATAAGGTCAAATAAGCCCCCAGTTGA
Found at i:94527168 original size:79 final size:81
Alignment explanation
Indices: 94527032--94527214 Score: 232
Period size: 79 Copynumber: 2.3 Consensus size: 81
94527022 TCGAATGATG
* *
94527032 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
94527096 TGTGCGAGTTACTA-A
66 TGTGCGAGTTACTATA
* * * **
94527111 TTCCGGGCTAAG-CCCGAAGGCATTGGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
94527173 TTTGTGCGAGTTACTATA
64 TTTGTGCGAGTTACTATA
* *
94527191 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
94527215 TGAACGAGTA
Statistics
Matches: 90, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 1 0.01
79 59 0.66
80 30 0.33
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGTTACTATA
Found at i:94527230 original size:40 final size:40
Alignment explanation
Indices: 94527033--94527216 Score: 216
Period size: 40 Copynumber: 4.6 Consensus size: 40
94527023 CGAATGATGT
* * * *
94527033 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* *
94527073 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-A
*
94527113 CCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
94527151 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
94527192 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
94527217 AACGAGTAGC
Statistics
Matches: 126, Mismatches: 11, Indels: 14
0.83 0.07 0.09
Matches are distributed among these distances:
39 35 0.28
40 81 0.64
41 10 0.08
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:94527238 original size:79 final size:79
Alignment explanation
Indices: 94527085--94527249 Score: 210
Period size: 79 Copynumber: 2.1 Consensus size: 79
94527075 GGACTAAGAT
* **
94527085 CCGAAGGCATTTGTGCGAGTTACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
*
94527150 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* *
94527164 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGTTACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACGAGTTA-C
* *
94527227 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
94527243 CCGAAGG
1 CCGAAGG
94527250 TACGTGATTC
Statistics
Matches: 75, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
78 2 0.03
79 49 0.65
80 24 0.32
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:94529034 original size:42 final size:42
Alignment explanation
Indices: 94528965--94529068 Score: 138
Period size: 42 Copynumber: 2.5 Consensus size: 42
94528955 AAAGGGGTTT
* * * * *
94528965 TCACACGGCCGATCACATGCCCGTGTCCTTGGCCCGTGTCCC
1 TCACACGGCCGAGCACACGCCCATGTCCTTGGCCCATATCCC
*
94529007 TCACACGGTCGAGCACACGCCCATGTCCTTGGCCCATATCCC
1 TCACACGGCCGAGCACACGCCCATGTCCTTGGCCCATATCCC
*
94529049 TCACACGGCCTAG-ACACGCC
1 TCACACGGCCGAGCACACGCC
94529069 TGTGTCATCG
Statistics
Matches: 54, Mismatches: 8, Indels: 1
0.86 0.13 0.02
Matches are distributed among these distances:
41 7 0.13
42 47 0.87
ACGTcount: A:0.17, C:0.43, G:0.21, T:0.18
Consensus pattern (42 bp):
TCACACGGCCGAGCACACGCCCATGTCCTTGGCCCATATCCC
Found at i:94531507 original size:43 final size:43
Alignment explanation
Indices: 94531454--94531565 Score: 154
Period size: 43 Copynumber: 2.6 Consensus size: 43
94531444 TCGAGATGTG
* *
94531454 ATTACATGTAAGACCATGTCTAGGACATTGGCATTCTATTATC
1 ATTACGTGTAAGACCATGTCTAGGACATTGGCATTCTATTATA
* * *
94531497 ATTACGTGTAAGACCAAGTCTAGGGCATTGGCATTGTATTATA
1 ATTACGTGTAAGACCATGTCTAGGACATTGGCATTCTATTATA
* *
94531540 ACT-CGTGTAAGACCTTGTCTAGGACA
1 ATTACGTGTAAGACCATGTCTAGGACA
94531566 GTGACATCAA
Statistics
Matches: 60, Mismatches: 9, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
42 20 0.33
43 40 0.67
ACGTcount: A:0.29, C:0.18, G:0.21, T:0.32
Consensus pattern (43 bp):
ATTACGTGTAAGACCATGTCTAGGACATTGGCATTCTATTATA
Found at i:94534595 original size:18 final size:18
Alignment explanation
Indices: 94534572--94534608 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
94534562 TATTATTTCA
94534572 TATTTTACCTTTTTAACC
1 TATTTTACCTTTTTAACC
94534590 TATTTTACCTTTTTAACC
1 TATTTTACCTTTTTAACC
94534608 T
1 T
94534609 TTTATAATTA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.22, C:0.22, G:0.00, T:0.57
Consensus pattern (18 bp):
TATTTTACCTTTTTAACC
Found at i:94534603 original size:8 final size:9
Alignment explanation
Indices: 94534574--94534611 Score: 53
Period size: 9 Copynumber: 4.3 Consensus size: 9
94534564 TTATTTCATA
94534574 TTTT-ACCT
1 TTTTAACCT
94534582 TTTTAACCT
1 TTTTAACCT
94534591 ATTTT-ACCT
1 -TTTTAACCT
94534600 TTTTAACCT
1 TTTTAACCT
94534609 TTT
1 TTT
94534612 ATAATTAATA
Statistics
Matches: 27, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
8 8 0.30
9 15 0.56
10 4 0.15
ACGTcount: A:0.18, C:0.21, G:0.00, T:0.61
Consensus pattern (9 bp):
TTTTAACCT
Found at i:94540783 original size:8 final size:8
Alignment explanation
Indices: 94540770--94540802 Score: 66
Period size: 8 Copynumber: 4.1 Consensus size: 8
94540760 ACATGCCATA
94540770 GTTTTAGG
1 GTTTTAGG
94540778 GTTTTAGG
1 GTTTTAGG
94540786 GTTTTAGG
1 GTTTTAGG
94540794 GTTTTAGG
1 GTTTTAGG
94540802 G
1 G
94540803 CCAACTCTAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 25 1.00
ACGTcount: A:0.12, C:0.00, G:0.39, T:0.48
Consensus pattern (8 bp):
GTTTTAGG
Found at i:94548534 original size:15 final size:16
Alignment explanation
Indices: 94548514--94548545 Score: 57
Period size: 15 Copynumber: 2.1 Consensus size: 16
94548504 CTTAATAACC
94548514 TCTTTCTTGA-CAAAT
1 TCTTTCTTGATCAAAT
94548529 TCTTTCTTGATCAAAT
1 TCTTTCTTGATCAAAT
94548545 T
1 T
94548546 TAGTATTCTC
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 10 0.62
16 6 0.38
ACGTcount: A:0.25, C:0.19, G:0.06, T:0.50
Consensus pattern (16 bp):
TCTTTCTTGATCAAAT
Found at i:94551222 original size:15 final size:15
Alignment explanation
Indices: 94551202--94551239 Score: 58
Period size: 15 Copynumber: 2.5 Consensus size: 15
94551192 GGATTCAATG
*
94551202 GATCATTCAGACCAA
1 GATCATTCAAACCAA
*
94551217 GATCATTCAAACCAG
1 GATCATTCAAACCAA
94551232 GATCATTC
1 GATCATTC
94551240 CCTTCCCTAA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
15 21 1.00
ACGTcount: A:0.37, C:0.26, G:0.13, T:0.24
Consensus pattern (15 bp):
GATCATTCAAACCAA
Found at i:94557068 original size:24 final size:26
Alignment explanation
Indices: 94557005--94557073 Score: 81
Period size: 24 Copynumber: 2.7 Consensus size: 26
94556995 GGACTCACCA
*
94557005 CAGCTCGTATGGGCTTACTGATATAC
1 CAGCTCGTATGAGCTTACTGATATAC
*
94557031 CAGCTCGTAAGAGCTTACTG-T-T-C
1 CAGCTCGTATGAGCTTACTGATATAC
*
94557054 TTAGCTCGTATGAGCTTACT
1 -CAGCTCGTATGAGCTTACT
94557074 ATTTAGCTTG
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
23 1 0.03
24 18 0.47
25 1 0.03
26 18 0.47
ACGTcount: A:0.22, C:0.23, G:0.22, T:0.33
Consensus pattern (26 bp):
CAGCTCGTATGAGCTTACTGATATAC
Found at i:94564487 original size:19 final size:19
Alignment explanation
Indices: 94564451--94564489 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
94564441 TTTTCATCAT
* *
94564451 AGTAAAATAAAATAATAAA
1 AGTAAAACAAAACAATAAA
*
94564470 AGTAAAACAAAACCATAAA
1 AGTAAAACAAAACAATAAA
94564489 A
1 A
94564490 ATAATTAAAA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.72, C:0.08, G:0.05, T:0.15
Consensus pattern (19 bp):
AGTAAAACAAAACAATAAA
Found at i:94565031 original size:55 final size:56
Alignment explanation
Indices: 94564966--94565080 Score: 137
Period size: 55 Copynumber: 2.1 Consensus size: 56
94564956 AGCATGGCTG
* * *
94564966 CCAGATACAGA-AAATGTGACAGAGTCACCAGATACAGATATTTTGTGGCAGT-GCCA
1 CCAGATACAGATAAACGTGACAGAGCCACCAGA-ACAGATAATTTGTGGCA-TAGCCA
* * *
94565022 CCAGA-ACAGATATACGTGGCAGGGCCACCAGAACAGATAATTTGTGGCATAGCCA
1 CCAGATACAGATAAACGTGACAGAGCCACCAGAACAGATAATTTGTGGCATAGCCA
94565077 CCAG
1 CCAG
94565081 GACGCTTCCT
Statistics
Matches: 51, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
54 1 0.02
55 29 0.57
56 21 0.41
ACGTcount: A:0.35, C:0.23, G:0.24, T:0.18
Consensus pattern (56 bp):
CCAGATACAGATAAACGTGACAGAGCCACCAGAACAGATAATTTGTGGCATAGCCA
Found at i:94565077 original size:28 final size:27
Alignment explanation
Indices: 94564991--94565080 Score: 101
Period size: 27 Copynumber: 3.2 Consensus size: 27
94564981 GTGACAGAGT
*
94564991 CACCAGATACAGATATTTTGTGGCAGTGC
1 CACCAGA-ACAGATAATTTGTGGCA-TGC
** *
94565020 CACCAGAACAGAT-ATACGTGGCAGGGC
1 CACCAGAACAGATAATTTGTGGCA-TGC
94565047 CACCAGAACAGATAATTTGTGGCATAGC
1 CACCAGAACAGATAATTTGTGGCAT-GC
94565075 CACCAG
1 CACCAG
94565081 GACGCTTCCT
Statistics
Matches: 52, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
27 23 0.44
28 22 0.42
29 7 0.13
ACGTcount: A:0.32, C:0.24, G:0.24, T:0.19
Consensus pattern (27 bp):
CACCAGAACAGATAATTTGTGGCATGC
Found at i:94565233 original size:28 final size:28
Alignment explanation
Indices: 94565186--94565250 Score: 112
Period size: 28 Copynumber: 2.3 Consensus size: 28
94565176 AAATTAACCC
*
94565186 TAGGGGTATAAAGGTCATTTTGCATACA
1 TAGGGGTATAAAGGTAATTTTGCATACA
*
94565214 TAGGGGTATAATGGTAATTTTGCATACA
1 TAGGGGTATAAAGGTAATTTTGCATACA
94565242 TAGGGGTAT
1 TAGGGGTAT
94565251 TCTAGTAAAT
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
28 35 1.00
ACGTcount: A:0.31, C:0.08, G:0.28, T:0.34
Consensus pattern (28 bp):
TAGGGGTATAAAGGTAATTTTGCATACA
Found at i:94565513 original size:8 final size:8
Alignment explanation
Indices: 94565497--94565528 Score: 55
Period size: 8 Copynumber: 4.0 Consensus size: 8
94565487 CCCAAAATAC
94565497 CGGCTTTT
1 CGGCTTTT
*
94565505 CGGCATTT
1 CGGCTTTT
94565513 CGGCTTTT
1 CGGCTTTT
94565521 CGGCTTTT
1 CGGCTTTT
94565529 GCCGATCTAG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
8 22 1.00
ACGTcount: A:0.03, C:0.25, G:0.25, T:0.47
Consensus pattern (8 bp):
CGGCTTTT
Found at i:94567032 original size:27 final size:27
Alignment explanation
Indices: 94566981--94567069 Score: 99
Period size: 27 Copynumber: 3.2 Consensus size: 27
94566971 GTGACAGAGT
*
94566981 CACCAGATACAGATATTTTGTGGCAGTGC
1 CACCAGA-ACAAATA-TTTGTGGCAGTGC
* *
94567010 CACCAGAACAAATATATGTGGCAGGGC
1 CACCAGAACAAATATTTGTGGCAGTGC
*
94567037 CACCAGAACATATAATTTGTGGCA-TAGC
1 CACCAGAACAAAT-ATTTGTGGCAGT-GC
94567065 CACCA
1 CACCA
94567070 TGACCCTTCC
Statistics
Matches: 52, Mismatches: 6, Indels: 5
0.83 0.10 0.08
Matches are distributed among these distances:
27 23 0.44
28 22 0.42
29 7 0.13
ACGTcount: A:0.34, C:0.24, G:0.21, T:0.21
Consensus pattern (27 bp):
CACCAGAACAAATATTTGTGGCAGTGC
Done.