Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr3
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 100348136
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 3062571 characters in sequence are not A, C, G, or T
File 275 of 290
Found at i:94874764 original size:2 final size:2
Alignment explanation
Indices: 94874757--94874798 Score: 84
Period size: 2 Copynumber: 21.0 Consensus size: 2
94874747 TAAGCACAAA
94874757 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
94874799 ATGTATATAA
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 40 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
CT
Found at i:94882306 original size:20 final size:21
Alignment explanation
Indices: 94882255--94882308 Score: 58
Period size: 20 Copynumber: 2.6 Consensus size: 21
94882245 TGGATTGTTT
94882255 GAAAATTATAAATAAATTAGAA
1 GAAAATTATAAAT-AATTAGAA
* *
94882277 G-AGATATATAAAT-ATTAGAG
1 GAAAAT-TATAAATAATTAGAA
94882297 GAAAATTATAAA
1 GAAAATTATAAA
94882309 AAGTTATGAG
Statistics
Matches: 27, Mismatches: 3, Indels: 6
0.75 0.08 0.17
Matches are distributed among these distances:
20 13 0.48
21 6 0.22
22 8 0.30
ACGTcount: A:0.59, C:0.00, G:0.13, T:0.28
Consensus pattern (21 bp):
GAAAATTATAAATAATTAGAA
Found at i:94882389 original size:20 final size:19
Alignment explanation
Indices: 94882324--94882446 Score: 65
Period size: 20 Copynumber: 6.3 Consensus size: 19
94882314 ATGAGAAATA
* *
94882324 TAAAAATTTAATATATTA-
1 TAAAAATTTAAAAAATTAT
* *
94882342 TAAAAA-TTATAATATTA-
1 TAAAAATTTAAAAAATTAT
*
94882359 CAAAAACTTTAAAAAATTAAT
1 TAAAAA-TTTAAAAAATT-AT
*
94882380 TAAAAATTTATAAAAACTAT
1 TAAAAATTTA-AAAAATTAT
* * *
94882400 GAAAAGTTATAAAAAGTTATAT
1 TAAAAATT-TAAAAA-AT-TAT
94882422 TAAAAATGATT-AAAAATTAT
1 TAAAAAT--TTAAAAAATTAT
94882442 TAAAA
1 TAAAA
94882447 GGTTATAAAA
Statistics
Matches: 81, Mismatches: 14, Indels: 18
0.72 0.12 0.16
Matches are distributed among these distances:
17 14 0.17
18 6 0.07
19 8 0.10
20 25 0.31
21 14 0.17
22 12 0.15
23 1 0.01
24 1 0.01
ACGTcount: A:0.59, C:0.02, G:0.03, T:0.35
Consensus pattern (19 bp):
TAAAAATTTAAAAAATTAT
Found at i:94882393 original size:10 final size:9
Alignment explanation
Indices: 94882298--94882420 Score: 74
Period size: 10 Copynumber: 13.0 Consensus size: 9
94882288 ATATTAGAGG
94882298 AAAATTATA
1 AAAATTATA
94882307 AAAAGTTATGA
1 AAAA-TTAT-A
*
94882318 GAAA-TATA
1 AAAATTATA
94882326 AAAATT-TA
1 AAAATTATA
*
94882334 ATATATTATA
1 A-AAATTATA
94882344 AAAATTAT-
1 AAAATTATA
* *
94882352 AATATTACA
1 AAAATTATA
94882361 AAAACTT-TAA
1 AAAA-TTAT-A
94882371 AAAATTAATTA
1 AAAATT-A-TA
94882382 AAAATTTATA
1 AAAA-TTATA
*
94882392 AAAACTATGA
1 AAAATTAT-A
*
94882402 AAAGTTATA
1 AAAATTATA
94882411 AAAAGTTATA
1 AAAA-TTATA
94882421 TTAAAAATGA
Statistics
Matches: 88, Mismatches: 12, Indels: 27
0.69 0.09 0.21
Matches are distributed among these distances:
8 13 0.15
9 30 0.34
10 32 0.36
11 10 0.11
12 3 0.03
ACGTcount: A:0.59, C:0.02, G:0.05, T:0.33
Consensus pattern (9 bp):
AAAATTATA
Found at i:94882425 original size:42 final size:42
Alignment explanation
Indices: 94882368--94882456 Score: 110
Period size: 42 Copynumber: 2.1 Consensus size: 42
94882358 ACAAAAACTT
*
94882368 TAAAAAATTAATTAAAAAT-TTATAAAAACTATGAAAA-GTTA
1 TAAAAAATTAATTAAAAATGAT-TAAAAACTATGAAAAGGTTA
* * *
94882409 TAAAAAGTTATATTAAAAATGATTAAAAATTATTAAAAGGTTA
1 TAAAAAATTA-ATTAAAAATGATTAAAAACTATGAAAAGGTTA
94882452 TAAAA
1 TAAAA
94882457 TTTAAAGTAT
Statistics
Matches: 41, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
41 9 0.22
42 22 0.54
43 10 0.24
ACGTcount: A:0.60, C:0.01, G:0.07, T:0.33
Consensus pattern (42 bp):
TAAAAAATTAATTAAAAATGATTAAAAACTATGAAAAGGTTA
Found at i:94882455 original size:20 final size:19
Alignment explanation
Indices: 94882370--94882456 Score: 66
Period size: 20 Copynumber: 4.2 Consensus size: 19
94882360 AAAAACTTTA
*
94882370 AAAAATTAATTAAAAATTTAT
1 AAAAATT-ATT-AAAAGTTAT
* *
94882391 AAAAACTATGAAAAGTTAT
1 AAAAATTATTAAAAGTTAT
* *
94882410 AAAAAGTTATATTAAAAATGATT
1 AAAAA--T-TATTAAAAGTTA-T
94882433 AAAAATTATTAAAAGGTTAT
1 AAAAATTATTAAAA-GTTAT
94882453 AAAA
1 AAAA
94882457 TTTAAAGTAT
Statistics
Matches: 52, Mismatches: 9, Indels: 11
0.72 0.12 0.15
Matches are distributed among these distances:
19 13 0.25
20 15 0.29
21 9 0.17
22 9 0.17
23 6 0.12
ACGTcount: A:0.60, C:0.01, G:0.07, T:0.32
Consensus pattern (19 bp):
AAAAATTATTAAAAGTTAT
Found at i:94882805 original size:28 final size:29
Alignment explanation
Indices: 94882750--94882807 Score: 82
Period size: 28 Copynumber: 2.0 Consensus size: 29
94882740 TTGAGTAATG
** *
94882750 TTAATAATATTTATATTTTTCTATAATTT
1 TTAATAATATTTATATTTTAATAAAATTT
94882779 TTAA-AATATTTATATTTTAATAAAATTT
1 TTAATAATATTTATATTTTAATAAAATTT
94882807 T
1 T
94882808 AGAATTTTTT
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
28 22 0.85
29 4 0.15
ACGTcount: A:0.40, C:0.02, G:0.00, T:0.59
Consensus pattern (29 bp):
TTAATAATATTTATATTTTAATAAAATTT
Found at i:94882821 original size:22 final size:22
Alignment explanation
Indices: 94882793--94882834 Score: 84
Period size: 22 Copynumber: 1.9 Consensus size: 22
94882783 AATATTTATA
94882793 TTTTAATAAAATTTTAGAATTT
1 TTTTAATAAAATTTTAGAATTT
94882815 TTTTAATAAAATTTTAGAAT
1 TTTTAATAAAATTTTAGAAT
94882835 CCTTTAAGAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.43, C:0.00, G:0.05, T:0.52
Consensus pattern (22 bp):
TTTTAATAAAATTTTAGAATTT
Found at i:94887271 original size:38 final size:38
Alignment explanation
Indices: 94887220--94887296 Score: 145
Period size: 38 Copynumber: 2.0 Consensus size: 38
94887210 CTTGGGAGAC
94887220 GCTATAGCTTTTAAGTAAGTGATGATGAGATAAAAATA
1 GCTATAGCTTTTAAGTAAGTGATGATGAGATAAAAATA
*
94887258 GCTATAGCTTTTAAGTGAGTGATGATGAGATAAAAATA
1 GCTATAGCTTTTAAGTAAGTGATGATGAGATAAAAATA
94887296 G
1 G
94887297 ATTAAACGGG
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
38 38 1.00
ACGTcount: A:0.40, C:0.05, G:0.23, T:0.31
Consensus pattern (38 bp):
GCTATAGCTTTTAAGTAAGTGATGATGAGATAAAAATA
Found at i:94902838 original size:8 final size:8
Alignment explanation
Indices: 94902825--94902849 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
94902815 AGAATTGTGG
94902825 ATGTGGAA
1 ATGTGGAA
94902833 ATGTGGAA
1 ATGTGGAA
94902841 ATGTGGAA
1 ATGTGGAA
94902849 A
1 A
94902850 AAGATTAAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.40, C:0.00, G:0.36, T:0.24
Consensus pattern (8 bp):
ATGTGGAA
Found at i:94906926 original size:42 final size:42
Alignment explanation
Indices: 94906848--94906928 Score: 101
Period size: 42 Copynumber: 1.9 Consensus size: 42
94906838 GTGCAGATTT
* * *
94906848 CACACGGCCAAGACACACGCCTATGTTCTAGGCCGTGTGGCA
1 CACACGGCCAAGACACAAGCCCATGTTCTAGCCCGTGTGGCA
* *
94906890 CACACGGCTAAGACACAAGCCCATG-TCTTCGCCCGTGTG
1 CACACGGCCAAGACACAAGCCCATGTTC-TAGCCCGTGTG
94906929 CTCAATTCTG
Statistics
Matches: 33, Mismatches: 5, Indels: 2
0.82 0.12 0.05
Matches are distributed among these distances:
41 2 0.06
42 31 0.94
ACGTcount: A:0.23, C:0.35, G:0.25, T:0.17
Consensus pattern (42 bp):
CACACGGCCAAGACACAAGCCCATGTTCTAGCCCGTGTGGCA
Found at i:94908733 original size:20 final size:22
Alignment explanation
Indices: 94908687--94908734 Score: 57
Period size: 20 Copynumber: 2.3 Consensus size: 22
94908677 CTGTAAAAGT
*
94908687 TATTTATCTATCAATAATCTTTC
1 TATTT-TCTATCAATAATATTTC
94908710 -ATTTTCTATC-ATAA-ATTTC
1 TATTTTCTATCAATAATATTTC
94908729 TATTTT
1 TATTTT
94908735 TCTGTATATA
Statistics
Matches: 23, Mismatches: 1, Indels: 5
0.79 0.03 0.17
Matches are distributed among these distances:
19 4 0.17
20 9 0.39
21 6 0.26
22 4 0.17
ACGTcount: A:0.29, C:0.15, G:0.00, T:0.56
Consensus pattern (22 bp):
TATTTTCTATCAATAATATTTC
Found at i:94908951 original size:14 final size:14
Alignment explanation
Indices: 94908932--94908981 Score: 57
Period size: 14 Copynumber: 3.5 Consensus size: 14
94908922 TTTAGGTTGG
94908932 AGATGATGAAAATA
1 AGATGATGAAAATA
**
94908946 AGATGAT-ATATTTGA
1 AGATGATGA-AAAT-A
94908961 AGATGATGAAAATA
1 AGATGATGAAAATA
94908975 AGATGAT
1 AGATGAT
94908982 ATATTTTCTT
Statistics
Matches: 29, Mismatches: 4, Indels: 6
0.74 0.10 0.15
Matches are distributed among these distances:
13 1 0.03
14 17 0.59
15 10 0.34
16 1 0.03
ACGTcount: A:0.50, C:0.00, G:0.22, T:0.28
Consensus pattern (14 bp):
AGATGATGAAAATA
Found at i:94908974 original size:29 final size:29
Alignment explanation
Indices: 94908932--94908987 Score: 112
Period size: 29 Copynumber: 1.9 Consensus size: 29
94908922 TTTAGGTTGG
94908932 AGATGATGAAAATAAGATGATATATTTGA
1 AGATGATGAAAATAAGATGATATATTTGA
94908961 AGATGATGAAAATAAGATGATATATTT
1 AGATGATGAAAATAAGATGATATATTT
94908988 TCTTTTCATC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.20, T:0.32
Consensus pattern (29 bp):
AGATGATGAAAATAAGATGATATATTTGA
Found at i:94914659 original size:40 final size:40
Alignment explanation
Indices: 94913696--94914640 Score: 1881
Period size: 40 Copynumber: 23.6 Consensus size: 40
94913686 CGGATGATAA
*
94913696 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAACTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTCCGAACTACTATAT
94913736 CCGGGCTAAGTCCCGAAGGCATTTGTCCGAACTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTCCGAACTACTATAT
94913776 CCGGGCTAAGTCCCGAAGGCATTTGTCCGAACTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTCCGAACTACTATAT
94913816 CCGGGCTAAGTCCCGAAGGCATTTGTCCGAACTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTCCGAACTACTATAT
94913856 CCGGGCTAAGTCCCGAAGGCATTTGTCCGAACTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTCCGAACTACTATAT
94913896 CCGGGCTAAGTCCCGAAGGCATTTGTCCGAACTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTCCGAACTACTATAT
94913936 CCGGGCTAAGTCCCGAAGGCATTTGTCCGAACTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTCCGAACTACTATAT
94913976 CCGGGCTAAGTCCCGAAGGCATTTGTCCGAACTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTCCGAACTACTATAT
94914016 CCGGGCTAAGTCCCGAAGGCATTTGTCCGAACTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTCCGAACTACTATAT
94914056 CCGGGCTAAGTCCCGAAGGCATTTGTCCGAACTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTCCGAACTACTATAT
94914096 CCGGGCTAAGTCCCGAAGGCATTTGTCCGAACTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTCCGAACTACTATAT
94914136 CCGGGCTAAGTCCCGAAGGCATTTGTCCGAACTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTCCGAACTACTATAT
94914176 CCGGGCTAAGTCCCGAAGGCATTTGTCCGAACTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTCCGAACTACTATAT
94914216 CCGGGCTAAGTCCCGAAGGCATTTGTCCGAACTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTCCGAACTACTATAT
94914256 CCGGGCTAAGTCCCGAAGGCATTTGTCCGAACTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTCCGAACTACTATAT
94914296 CCGGGCTAAGTCCCGAAGGCATTTGTCCGAACTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTCCGAACTACTATAT
94914336 CCGGGCTAAGTCCCGAAGGCATTTGTCCGAACTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTCCGAACTACTATAT
94914376 CCGGGCTAAGTCCCGAAGGCATTTGTCCGAACTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTCCGAACTACTATAT
94914416 CCGGGCTAAGTCCCGAAGGCATTTGTCCGAACTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTCCGAACTACTATAT
94914456 CCGGGCTAAGTCCCGAAGGCATTTGTCCGAACTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTCCGAACTACTATAT
94914496 CCGGGCTAAGTCCCGAAGGCATTTGTCCGAACTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTCCGAACTACTATAT
94914536 CCGGGCTAAGTCCCGAAGGCATTTGTCCGAACTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTCCGAACTACTATAT
94914576 CCGGGCTAAGTCCCGAAGGCATTTGTCCGAACTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTCCGAACTACTATAT
94914616 CCGGGCTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
94914641 AGCGAGTGGC
Statistics
Matches: 904, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 904 1.00
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTCCGAACTACTATAT
Found at i:94930504 original size:21 final size:21
Alignment explanation
Indices: 94930480--94930522 Score: 52
Period size: 21 Copynumber: 2.1 Consensus size: 21
94930470 ATAGGAGAGT
*
94930480 AAAAGAGCGAG-AAACAGGCC
1 AAAAAAGCGAGAAAACAGGCC
* *
94930500 AAAAAAGGGAGAAAACGGGCC
1 AAAAAAGCGAGAAAACAGGCC
94930521 AA
1 AA
94930523 CATGAGAAAT
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
20 9 0.47
21 10 0.53
ACGTcount: A:0.53, C:0.16, G:0.30, T:0.00
Consensus pattern (21 bp):
AAAAAAGCGAGAAAACAGGCC
Found at i:94947446 original size:41 final size:41
Alignment explanation
Indices: 94947389--94947472 Score: 168
Period size: 41 Copynumber: 2.0 Consensus size: 41
94947379 ACAAAACCGA
94947389 GTCATAAAATTTAGTTAAAATTTTATTTGCATATCTTATAT
1 GTCATAAAATTTAGTTAAAATTTTATTTGCATATCTTATAT
94947430 GTCATAAAATTTAGTTAAAATTTTATTTGCATATCTTATAT
1 GTCATAAAATTTAGTTAAAATTTTATTTGCATATCTTATAT
94947471 GT
1 GT
94947473 GTGATAGTAC
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 43 1.00
ACGTcount: A:0.36, C:0.07, G:0.08, T:0.49
Consensus pattern (41 bp):
GTCATAAAATTTAGTTAAAATTTTATTTGCATATCTTATAT
Found at i:94949096 original size:28 final size:27
Alignment explanation
Indices: 94949039--94949190 Score: 232
Period size: 27 Copynumber: 5.6 Consensus size: 27
94949029 TAAATTGTGC
* *
94949039 AGCACTAAGTGTGCGAATTGAATATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
94949066 AGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAG-TTGACTATGT
94949094 AGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
*
94949121 AGCACTAAGTGTGCGAGTATGATTATGT
1 AGCACTAAGTGTGCGAGT-TGACTATGT
* *
94949149 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGTTGACTATGT
*
94949176 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
94949191 GACTTAATAT
Statistics
Matches: 118, Mismatches: 5, Indels: 4
0.93 0.04 0.03
Matches are distributed among these distances:
27 66 0.56
28 52 0.44
ACGTcount: A:0.28, C:0.13, G:0.29, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGTTGACTATGT
Found at i:94949104 original size:55 final size:55
Alignment explanation
Indices: 94949039--94949190 Score: 241
Period size: 55 Copynumber: 2.8 Consensus size: 55
94949029 TAAATTGTGC
* *
94949039 AGCACTAAGTGTGCGAATTGAATATGTAGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGAATATGTAGCACTAAGTGTGCGAGTATGACTATGT
* *
94949094 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTATGATTATGT
1 AGCACTAAGTGTGCGAGTTGAATATGTAGCACTAAGTGTGCGAGTATGACTATGT
* * *
94949149 AGCACTAAGTGTGCGAGTTGATTATATAGCACTGAGTGTGCG
1 AGCACTAAGTGTGCGAGTTGAATATGTAGCACTAAGTGTGCG
94949191 GACTTAATAT
Statistics
Matches: 90, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
55 90 1.00
ACGTcount: A:0.28, C:0.13, G:0.29, T:0.30
Consensus pattern (55 bp):
AGCACTAAGTGTGCGAGTTGAATATGTAGCACTAAGTGTGCGAGTATGACTATGT
Found at i:94957569 original size:28 final size:27
Alignment explanation
Indices: 94957512--94957663 Score: 232
Period size: 27 Copynumber: 5.6 Consensus size: 27
94957502 TAAATTGTGC
* *
94957512 AGCACTAAGTGTGCGAATTGAATATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
94957539 AGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAG-TTGACTATGT
94957567 AGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
*
94957594 AGCACTAAGTGTGCGAGTATGATTATGT
1 AGCACTAAGTGTGCGAGT-TGACTATGT
* *
94957622 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGTTGACTATGT
*
94957649 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
94957664 GACTTAATAT
Statistics
Matches: 118, Mismatches: 5, Indels: 4
0.93 0.04 0.03
Matches are distributed among these distances:
27 66 0.56
28 52 0.44
ACGTcount: A:0.28, C:0.13, G:0.29, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGTTGACTATGT
Found at i:94957577 original size:55 final size:55
Alignment explanation
Indices: 94957512--94957663 Score: 241
Period size: 55 Copynumber: 2.8 Consensus size: 55
94957502 TAAATTGTGC
* *
94957512 AGCACTAAGTGTGCGAATTGAATATGTAGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGAATATGTAGCACTAAGTGTGCGAGTATGACTATGT
* *
94957567 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTATGATTATGT
1 AGCACTAAGTGTGCGAGTTGAATATGTAGCACTAAGTGTGCGAGTATGACTATGT
* * *
94957622 AGCACTAAGTGTGCGAGTTGATTATATAGCACTGAGTGTGCG
1 AGCACTAAGTGTGCGAGTTGAATATGTAGCACTAAGTGTGCG
94957664 GACTTAATAT
Statistics
Matches: 90, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
55 90 1.00
ACGTcount: A:0.28, C:0.13, G:0.29, T:0.30
Consensus pattern (55 bp):
AGCACTAAGTGTGCGAGTTGAATATGTAGCACTAAGTGTGCGAGTATGACTATGT
Found at i:94964308 original size:46 final size:46
Alignment explanation
Indices: 94964258--94964567 Score: 620
Period size: 46 Copynumber: 6.7 Consensus size: 46
94964248 TGGTTGAGCA
94964258 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
94964304 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
94964350 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
94964396 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
94964442 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
94964488 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
94964534 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
94964568 GGGGCGGGTT
Statistics
Matches: 264, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
46 264 1.00
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.31
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:94965115 original size:51 final size:51
Alignment explanation
Indices: 94965059--94965159 Score: 193
Period size: 51 Copynumber: 2.0 Consensus size: 51
94965049 AGCAATATAC
94965059 TTATTTTGTGTAAATAATTTTATGATATGGCCATGTTTGGTTGAGAAAATG
1 TTATTTTGTGTAAATAATTTTATGATATGGCCATGTTTGGTTGAGAAAATG
*
94965110 TTATTTTGTGTAAATAATTTTATGATATGGCCATGTTTTGTTGAGAAAAT
1 TTATTTTGTGTAAATAATTTTATGATATGGCCATGTTTGGTTGAGAAAAT
94965160 TTTTGATATT
Statistics
Matches: 49, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
51 49 1.00
ACGTcount: A:0.30, C:0.04, G:0.20, T:0.47
Consensus pattern (51 bp):
TTATTTTGTGTAAATAATTTTATGATATGGCCATGTTTGGTTGAGAAAATG
Found at i:94972086 original size:46 final size:46
Alignment explanation
Indices: 94972036--94972345 Score: 620
Period size: 46 Copynumber: 6.7 Consensus size: 46
94972026 TGGTTGAGCA
94972036 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
94972082 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
94972128 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
94972174 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
94972220 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
94972266 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
94972312 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
94972346 GGGGCGGGTT
Statistics
Matches: 264, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
46 264 1.00
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.31
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:94975671 original size:20 final size:20
Alignment explanation
Indices: 94975646--94975685 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
94975636 TAAATTATGT
94975646 TAGACAACTTGTACTACTCG
1 TAGACAACTTGTACTACTCG
94975666 TAGACAACTTGTACTACTCG
1 TAGACAACTTGTACTACTCG
94975686 GTTTTAAGCG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.30, C:0.25, G:0.15, T:0.30
Consensus pattern (20 bp):
TAGACAACTTGTACTACTCG
Found at i:94983189 original size:20 final size:20
Alignment explanation
Indices: 94983164--94983203 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
94983154 CTAATTATGT
94983164 TAGACAACTTGTACTACTCG
1 TAGACAACTTGTACTACTCG
94983184 TAGACAACTTGTACTACTCG
1 TAGACAACTTGTACTACTCG
94983204 GTTTTAAGCG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.30, C:0.25, G:0.15, T:0.30
Consensus pattern (20 bp):
TAGACAACTTGTACTACTCG
Found at i:94983399 original size:30 final size:30
Alignment explanation
Indices: 94983359--94983419 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
94983349 ATTCCCGAGC
* *
94983359 TTAGGGGCAAAAGTGTAATTATGCAAAAGT
1 TTAGCGGCAAAAATGTAATTATGCAAAAGT
* *
94983389 TTAGCGGCAAAAATGTAATTTTGCCAAAGT
1 TTAGCGGCAAAAATGTAATTATGCAAAAGT
94983419 T
1 T
94983420 CGTATTAAAT
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.38, C:0.10, G:0.23, T:0.30
Consensus pattern (30 bp):
TTAGCGGCAAAAATGTAATTATGCAAAAGT
Found at i:94984134 original size:13 final size:13
Alignment explanation
Indices: 94984116--94984146 Score: 62
Period size: 13 Copynumber: 2.4 Consensus size: 13
94984106 TGAATAAGAA
94984116 GAAGGCCTAAAAT
1 GAAGGCCTAAAAT
94984129 GAAGGCCTAAAAT
1 GAAGGCCTAAAAT
94984142 GAAGG
1 GAAGG
94984147 TGACATGTTG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.45, C:0.13, G:0.29, T:0.13
Consensus pattern (13 bp):
GAAGGCCTAAAAT
Found at i:95000301 original size:37 final size:37
Alignment explanation
Indices: 95000251--95000329 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
95000241 TTATTACGAA
* * *
95000251 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
95000288 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
95000325 GTCTT
1 GTCTT
95000330 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:95000535 original size:47 final size:47
Alignment explanation
Indices: 95000492--95000970 Score: 742
Period size: 47 Copynumber: 10.1 Consensus size: 47
95000482 TTGGCCACTC
* * * *
95000492 GGCCTTGTCACATATATACACTTTCACATTCGTCACATCGGCCATTA
1 GGCCTTATCACACATATACACTTTCACATTCATCACATCGGCTATTA
*
95000539 GGCCTTATCACATATATACACTTTCACATTCATCACATCGGCTATTA
1 GGCCTTATCACACATATACACTTTCACATTCATCACATCGGCTATTA
* *
95000586 GGCCTTATCACACACATACACTTTCACATTCATCACGTCGGCTATTA
1 GGCCTTATCACACATATACACTTTCACATTCATCACATCGGCTATTA
95000633 GGCCTTATCACACATATACACTTTCACATTCATCACATCGGCTATTA
1 GGCCTTATCACACATATACACTTTCACATTCATCACATCGGCTATTA
* *
95000680 GGCCCTATCACACATATACGCTTTCACATTCATCACATCGGCTATTA
1 GGCCTTATCACACATATACACTTTCACATTCATCACATCGGCTATTA
* *
95000727 GGCCCTATCACACATATACGCTTTCACATTCATCACATCGGCTATTA
1 GGCCTTATCACACATATACACTTTCACATTCATCACATCGGCTATTA
* *
95000774 GGCCCTATCACACATATACGCTTTCACATTCATCACATCGGCTATTA
1 GGCCTTATCACACATATACACTTTCACATTCATCACATCGGCTATTA
** *
95000821 GGCCTTATCACGTATATACACTTTCACATTCATCACATCGGCCATTA
1 GGCCTTATCACACATATACACTTTCACATTCATCACATCGGCTATTA
** *
95000868 GGCCTTATCACGTATATACACTTTCACATTCATCACATCGGCCATTA
1 GGCCTTATCACACATATACACTTTCACATTCATCACATCGGCTATTA
* * *
95000915 GGCCCTATCACATATATATACACTTTCACATTCATCACATCGGCCATTA
1 GGCCTTATCAC--ACATATACACTTTCACATTCATCACATCGGCTATTA
95000964 GGCCTTA
1 GGCCTTA
95000971 CTATCATTTC
Statistics
Matches: 412, Mismatches: 18, Indels: 2
0.95 0.04 0.00
Matches are distributed among these distances:
47 371 0.90
49 41 0.10
ACGTcount: A:0.28, C:0.30, G:0.10, T:0.31
Consensus pattern (47 bp):
GGCCTTATCACACATATACACTTTCACATTCATCACATCGGCTATTA
Found at i:95004126 original size:58 final size:58
Alignment explanation
Indices: 95004032--95004143 Score: 179
Period size: 58 Copynumber: 1.9 Consensus size: 58
95004022 AGGAATGCCA
* *
95004032 CACAAGCAGCTAGGGTGTGCGGGCGTGATGCATTTGGGAGCAGTGATGCGCAGCGCCG
1 CACAAGCAGCTAGGGTGTACGGGCGTGATGCATTTGGGAGCAATGATGCGCAGCGCCG
* * *
95004090 CACAAGCAGCTAGGGTGTACGGGCGTGGTGCGTTTGGGAGCAATGGTGCGCAGC
1 CACAAGCAGCTAGGGTGTACGGGCGTGATGCATTTGGGAGCAATGATGCGCAGC
95004144 AAGGCTGGAA
Statistics
Matches: 49, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
58 49 1.00
ACGTcount: A:0.19, C:0.21, G:0.42, T:0.18
Consensus pattern (58 bp):
CACAAGCAGCTAGGGTGTACGGGCGTGATGCATTTGGGAGCAATGATGCGCAGCGCCG
Found at i:95004743 original size:27 final size:27
Alignment explanation
Indices: 95004658--95004745 Score: 74
Period size: 27 Copynumber: 3.3 Consensus size: 27
95004648 TATAATTATA
95004658 TATTAAAGATTATCATCTTATTATCTT
1 TATTAAAGATTATCATCTTATTATCTT
* * * * * *
95004685 TATCAACA-TTTAATAGATATAATTA--TA
1 TATTAA-AGATT-AT-CATCTTATTATCTT
95004712 TATTAAAGATTATCATCTTATTATCTT
1 TATTAAAGATTATCATCTTATTATCTT
95004739 TATTAAA
1 TATTAAA
95004746 AACTTATCGA
Statistics
Matches: 43, Mismatches: 12, Indels: 12
0.64 0.18 0.18
Matches are distributed among these distances:
25 7 0.16
26 3 0.07
27 23 0.53
28 3 0.07
29 7 0.16
ACGTcount: A:0.40, C:0.09, G:0.03, T:0.48
Consensus pattern (27 bp):
TATTAAAGATTATCATCTTATTATCTT
Found at i:95012465 original size:37 final size:37
Alignment explanation
Indices: 95012407--95012514 Score: 182
Period size: 37 Copynumber: 2.9 Consensus size: 37
95012397 GCTCAGACGA
* *
95012407 AATCTCCACACGAAGTTATCGGGTCTTACCCGGACA-
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
95012443 AGATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
1 A-ATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
95012481 AATCTCCACACGTAGTCATCGGGTCTTACCCGGA
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGA
95012515 ATATATTTCC
Statistics
Matches: 68, Mismatches: 2, Indels: 3
0.93 0.03 0.04
Matches are distributed among these distances:
36 1 0.01
37 66 0.97
38 1 0.01
ACGTcount: A:0.25, C:0.31, G:0.20, T:0.23
Consensus pattern (37 bp):
AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
Found at i:95012795 original size:47 final size:47
Alignment explanation
Indices: 95012716--95012909 Score: 289
Period size: 47 Copynumber: 4.1 Consensus size: 47
95012706 CATATATATT
* * * *
95012716 TCACATTAGCCATTCGGCTTTACCACATATATGCATGTTCATATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* * *
95012763 CCACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
95012810 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* * **
95012857 TCACATTGGCCATTCGGCCTTATCTCATATATACACATTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
95012904 TCACAT
1 TCACAT
95012910 AAAATCCTAA
Statistics
Matches: 133, Mismatches: 14, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
47 133 1.00
ACGTcount: A:0.27, C:0.29, G:0.11, T:0.33
Consensus pattern (47 bp):
TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
Found at i:95012836 original size:22 final size:22
Alignment explanation
Indices: 95012809--95012880 Score: 58
Period size: 22 Copynumber: 3.1 Consensus size: 22
95012799 GCTCACATTC
95012809 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCGGCCTT
* * *
95012831 ATCACATATATG-CATGTTC-ACATT
1 ATCACAT-T-GGCCA--TTCGGCCTT
95012855 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
95012878 ATC
1 ATC
95012881 TCATATATAC
Statistics
Matches: 37, Mismatches: 6, Indels: 14
0.65 0.11 0.25
Matches are distributed among these distances:
22 13 0.35
23 7 0.19
24 7 0.19
25 10 0.27
ACGTcount: A:0.24, C:0.29, G:0.14, T:0.33
Consensus pattern (22 bp):
ATCACATTGGCCATTCGGCCTT
Found at i:95017687 original size:118 final size:112
Alignment explanation
Indices: 95017465--95017695 Score: 248
Period size: 118 Copynumber: 2.0 Consensus size: 112
95017455 AAACTACATG
* * * * * ** *
95017465 ATACATACTTTAACATTTCAAGCAAATATAATATAGAAAATGATAAATAATGACATAAATTGCAT
1 ATACATACATTAACATTTCAAGAAAATACAACATAGAAAATAATAAATAACAACATAAATTACAT
* ** *
95017530 AATATATTATTAACATTTCATGCTGATATAATCATAAATAACATAAT
66 AATATATTAATAACATTTCATGCAAATATAATCATAAATAACAAAAT
* *
95017577 ATACATACATTAACATTTCATGTAAAATACAACATAGAAAATAATGAATATAACAATATAAATTA
1 ATACATACATTAACATTTCAAG-AAAATACAACATAGAAAATAAT-AA-ATAACAACATAAATTA
* *
95017642 CATAGTATATATATAATAATATTTCATGCAAATATAA-CTTAAAATAACAAAAT
63 CATA--ATATAT-TAATAACATTTCATGCAAATATAATCAT-AAATAACAAAAT
95017695 A
1 A
95017696 AATAAACAAT
Statistics
Matches: 96, Mismatches: 16, Indels: 8
0.80 0.13 0.07
Matches are distributed among these distances:
112 20 0.21
113 18 0.19
114 2 0.02
115 16 0.17
117 8 0.08
118 32 0.33
ACGTcount: A:0.52, C:0.10, G:0.05, T:0.32
Consensus pattern (112 bp):
ATACATACATTAACATTTCAAGAAAATACAACATAGAAAATAATAAATAACAACATAAATTACAT
AATATATTAATAACATTTCATGCAAATATAATCATAAATAACAAAAT
Found at i:95018125 original size:14 final size:14
Alignment explanation
Indices: 95018106--95018147 Score: 52
Period size: 14 Copynumber: 3.1 Consensus size: 14
95018096 ATTTTAAAAT
95018106 TATACATAATATAA
1 TATACATAATATAA
*
95018120 TATAC--AATAAAA
1 TATACATAATATAA
*
95018132 TATAAATAATATAA
1 TATACATAATATAA
95018146 TA
1 TA
95018148 GATGAAATTA
Statistics
Matches: 23, Mismatches: 3, Indels: 4
0.77 0.10 0.13
Matches are distributed among these distances:
12 10 0.43
14 13 0.57
ACGTcount: A:0.62, C:0.05, G:0.00, T:0.33
Consensus pattern (14 bp):
TATACATAATATAA
Found at i:95019532 original size:90 final size:91
Alignment explanation
Indices: 95019401--95019598 Score: 303
Period size: 90 Copynumber: 2.2 Consensus size: 91
95019391 CCTCATCAAC
* *
95019401 TACAGAGACACCAAATC-TGCTATCTTCGATCTGCTTTGATGTAAACACACGAATGTCAGATCTG
1 TACAGAGACGCCAAATCTTGCTATCTTCGATCTGATTTGATGTAAACACACGAATGTCAGATCTG
95019465 CTATCTTCGATCTGCTCCCCGTCTAA
66 CTATCTTCGATCTGCTCCCCGTCTAA
* * *
95019491 TACGGAGACGCCAAATCTTTC-ATCTTCGATCT-ATTTCGATGTAAACACACGAATGTTAGATCT
1 TACAGAGACGCCAAATCTTGCTATCTTCGATCTGATTT-GATGTAAACACACGAATGTCAGATCT
*
95019554 GCTATCTTTGATCTGCTCCCCGTCTAA
65 GCTATCTTCGATCTGCTCCCCGTCTAA
*
95019581 TACAGAGATGCCAAATCT
1 TACAGAGACGCCAAATCT
95019599 ACTTCTTCGA
Statistics
Matches: 98, Mismatches: 8, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
89 3 0.03
90 93 0.95
91 2 0.02
ACGTcount: A:0.27, C:0.26, G:0.16, T:0.31
Consensus pattern (91 bp):
TACAGAGACGCCAAATCTTGCTATCTTCGATCTGATTTGATGTAAACACACGAATGTCAGATCTG
CTATCTTCGATCTGCTCCCCGTCTAA
Found at i:95023027 original size:30 final size:30
Alignment explanation
Indices: 95022991--95023050 Score: 84
Period size: 30 Copynumber: 2.0 Consensus size: 30
95022981 TTCCCGAGCC
*
95022991 TAGGGGCAAAAGTGAAATTATGCAAAAGTT
1 TAGGGGCAAAAATGAAATTATGCAAAAGTT
* * *
95023021 TAGGGGCAAAAATGTAATTTTGCCAAAGTT
1 TAGGGGCAAAAATGAAATTATGCAAAAGTT
95023051 CATATTAAAT
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.40, C:0.08, G:0.25, T:0.27
Consensus pattern (30 bp):
TAGGGGCAAAAATGAAATTATGCAAAAGTT
Found at i:95024894 original size:99 final size:99
Alignment explanation
Indices: 95024720--95024911 Score: 276
Period size: 99 Copynumber: 1.9 Consensus size: 99
95024710 AAATTCTATA
* * ** *
95024720 AAAAAAATTAGTAAATTTATATATGAGTCTAGTTTTAGGAAAAATTTACGGAATTTTATTTCGAG
1 AAAAAAATTAGTAAATATATATATGAATCTAGTTTTAGGAAAAATTTACGGAATTGGATTTCAAG
** *
95024785 TTTCGTAACTCGAGATATGAATTTTTAAATCTAG
66 TTTCAAAACTCAAGATATGAATTTTTAAATCTAG
* * * *
95024819 AAAAAATTTATTAAATATATATATGAATCTAGTTTTAGGGAAAATTTACGGAATTGGATTTTAAG
1 AAAAAAATTAGTAAATATATATATGAATCTAGTTTTAGGAAAAATTTACGGAATTGGATTTCAAG
95024884 TTTCAAAACTCAAGATATGAATTTTTAA
66 TTTCAAAACTCAAGATATGAATTTTTAA
95024912 GAGACTGTGA
Statistics
Matches: 81, Mismatches: 12, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
99 81 1.00
ACGTcount: A:0.41, C:0.06, G:0.14, T:0.39
Consensus pattern (99 bp):
AAAAAAATTAGTAAATATATATATGAATCTAGTTTTAGGAAAAATTTACGGAATTGGATTTCAAG
TTTCAAAACTCAAGATATGAATTTTTAAATCTAG
Found at i:95027573 original size:69 final size:69
Alignment explanation
Indices: 95027462--95028290 Score: 1658
Period size: 69 Copynumber: 12.0 Consensus size: 69
95027452 ATGCTCCTAC
95027462 TATGTTTATGGATTTAATGAATCGCATATTTCGGCCATACTTGGACAAATTTGTTGTGGTGTTTA
1 TATGTTTATGGATTTAATGAATCGCATATTTCGGCCATACTTGGACAAATTTGTTGTGGTGTTTA
95027527 TAGA
66 TAGA
95027531 TATGTTTATGGATTTAATGAATCGCATATTTCGGCCATACTTGGACAAATTTGTTGTGGTGTTTA
1 TATGTTTATGGATTTAATGAATCGCATATTTCGGCCATACTTGGACAAATTTGTTGTGGTGTTTA
95027596 TAGA
66 TAGA
95027600 TATGTTTATGGATTTAATGAATCGCATATTTCGGCCATACTTGGACAAATTTGTTGTGGTGTTTA
1 TATGTTTATGGATTTAATGAATCGCATATTTCGGCCATACTTGGACAAATTTGTTGTGGTGTTTA
95027665 TAGA
66 TAGA
95027669 TATGTTTATGGATTTAATGAATCGCATATTTCGGCCATACTTGGACAAATTTGTTGTGGTGTTTA
1 TATGTTTATGGATTTAATGAATCGCATATTTCGGCCATACTTGGACAAATTTGTTGTGGTGTTTA
95027734 TAGA
66 TAGA
95027738 TATGTTTATGGATTTAATGAATCGCATATTTCGGCCATACTTGGACAAATTTGTTGTGGTGTTTA
1 TATGTTTATGGATTTAATGAATCGCATATTTCGGCCATACTTGGACAAATTTGTTGTGGTGTTTA
95027803 TAGA
66 TAGA
95027807 TATGTTTATGGATTTAATGAATCGCATATTTCGGCCATACTTGGACAAATTTGTTGTGGTGTTTA
1 TATGTTTATGGATTTAATGAATCGCATATTTCGGCCATACTTGGACAAATTTGTTGTGGTGTTTA
95027872 TAGA
66 TAGA
95027876 TATGTTTATGGATTTAATGAATCGCATATTTCGGCCATACTTGGACAAATTTGTTGTGGTGTTTA
1 TATGTTTATGGATTTAATGAATCGCATATTTCGGCCATACTTGGACAAATTTGTTGTGGTGTTTA
95027941 TAGA
66 TAGA
95027945 TATGTTTATGGATTTAATGAATCGCATATTTCGGCCATACTTGGACAAATTTGTTGTGGTGTTTA
1 TATGTTTATGGATTTAATGAATCGCATATTTCGGCCATACTTGGACAAATTTGTTGTGGTGTTTA
95028010 TAGA
66 TAGA
95028014 TATGTTTATGGATTTAATGAATCGCATATTTCGGCCATACTTGGACAAATTTGTTGTGGTGTTTA
1 TATGTTTATGGATTTAATGAATCGCATATTTCGGCCATACTTGGACAAATTTGTTGTGGTGTTTA
95028079 TAGA
66 TAGA
95028083 TATGTTTATGGATTTAATGAATCGCATATTTCGGCCATACTTGGACAAATTTGTTGTGGTGTTTA
1 TATGTTTATGGATTTAATGAATCGCATATTTCGGCCATACTTGGACAAATTTGTTGTGGTGTTTA
95028148 TAGA
66 TAGA
95028152 TATGTTTATGGATTTAATGAATCGCATATTTCGGCCATACTTGGACAAATTTGTTGTGGTGTTTA
1 TATGTTTATGGATTTAATGAATCGCATATTTCGGCCATACTTGGACAAATTTGTTGTGGTGTTTA
95028217 TAGA
66 TAGA
95028221 TATGTTTATGGATTTAATGAATCGCATATTTCGGCCATACTTGGACAAATTTGTTGTGGTGTTTA
1 TATGTTTATGGATTTAATGAATCGCATATTTCGGCCATACTTGGACAAATTTGTTGTGGTGTTTA
95028286 TAGA
66 TAGA
95028290 T
1 T
95028291 GATATTTTAA
Statistics
Matches: 760, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
69 760 1.00
ACGTcount: A:0.26, C:0.10, G:0.22, T:0.42
Consensus pattern (69 bp):
TATGTTTATGGATTTAATGAATCGCATATTTCGGCCATACTTGGACAAATTTGTTGTGGTGTTTA
TAGA
Found at i:95030928 original size:48 final size:48
Alignment explanation
Indices: 95030829--95030926 Score: 148
Period size: 47 Copynumber: 2.1 Consensus size: 48
95030819 TAAATAGAAA
*
95030829 TTTGACCAATTTCTAAGTCTATGGACAAAAATTGGACATGGATGGAAT
1 TTTGACCAATTTCTAAGTCTATGGACAAAAATTGGACATGGAAGGAAT
95030877 TTTGACCAATTT-TAAGGTC-ATGGAC-AAAATTAGGACATGGAAGGAAT
1 TTTGACCAATTTCTAA-GTCTATGGACAAAAATT-GGACATGGAAGGAAT
95030924 TTT
1 TTT
95030927 TGGAAAGTTT
Statistics
Matches: 47, Mismatches: 1, Indels: 5
0.89 0.02 0.09
Matches are distributed among these distances:
46 6 0.13
47 26 0.55
48 15 0.32
ACGTcount: A:0.36, C:0.11, G:0.21, T:0.32
Consensus pattern (48 bp):
TTTGACCAATTTCTAAGTCTATGGACAAAAATTGGACATGGAAGGAAT
Found at i:95031478 original size:29 final size:30
Alignment explanation
Indices: 95031431--95031489 Score: 75
Period size: 29 Copynumber: 2.0 Consensus size: 30
95031421 TTCCTGAGCC
*
95031431 TAGGGGCAAAAGTGAAATTATGCAAAAGTT
1 TAGGGGCAAAAATGAAATTATGCAAAAGTT
* * *
95031461 TAGGGG-AAAAATGTAATTTTGCCAAAGTT
1 TAGGGGCAAAAATGAAATTATGCAAAAGTT
95031490 CGTATTAAAT
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
29 19 0.76
30 6 0.24
ACGTcount: A:0.41, C:0.07, G:0.25, T:0.27
Consensus pattern (30 bp):
TAGGGGCAAAAATGAAATTATGCAAAAGTT
Found at i:95032268 original size:31 final size:31
Alignment explanation
Indices: 95032233--95032295 Score: 117
Period size: 31 Copynumber: 2.0 Consensus size: 31
95032223 TGGTAAATGA
*
95032233 GAAAATTTGACAGGTATGTGCTTAAACCCTC
1 GAAAATTCGACAGGTATGTGCTTAAACCCTC
95032264 GAAAATTCGACAGGTATGTGCTTAAACCCTC
1 GAAAATTCGACAGGTATGTGCTTAAACCCTC
95032295 G
1 G
95032296 GGTTGAAAAC
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.32, C:0.21, G:0.21, T:0.27
Consensus pattern (31 bp):
GAAAATTCGACAGGTATGTGCTTAAACCCTC
Found at i:95042389 original size:18 final size:18
Alignment explanation
Indices: 95042366--95042400 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
95042356 ATGCAAATAT
*
95042366 ATAAAAACAATAAATAAC
1 ATAAAAACAACAAATAAC
*
95042384 ATAAAAATAACAAATAA
1 ATAAAAACAACAAATAA
95042401 TTTATAAGAT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.74, C:0.09, G:0.00, T:0.17
Consensus pattern (18 bp):
ATAAAAACAACAAATAAC
Found at i:95042641 original size:17 final size:18
Alignment explanation
Indices: 95042597--95042642 Score: 53
Period size: 17 Copynumber: 2.7 Consensus size: 18
95042587 AAAAAAATGG
95042597 TTAATATATATAAATACAC
1 TTAATATATAT-AATACAC
*
95042616 -T-ATAGATATAATA-AC
1 TTAATATATATAATACAC
95042631 TTAATATATATA
1 TTAATATATATA
95042643 TTTATAAAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 6
0.74 0.06 0.19
Matches are distributed among these distances:
15 2 0.09
16 5 0.22
17 15 0.65
18 1 0.04
ACGTcount: A:0.52, C:0.07, G:0.02, T:0.39
Consensus pattern (18 bp):
TTAATATATATAATACAC
Found at i:95042796 original size:26 final size:26
Alignment explanation
Indices: 95042756--95042833 Score: 88
Period size: 26 Copynumber: 3.0 Consensus size: 26
95042746 TTTAAAATTT
*
95042756 TAAAATTATACATAATATAATATAAAA
1 TAAAA-TATAAATAATATAATATAAAA
*
95042783 TAAAATATAAATAATATAATATATAA
1 TAAAATATAAATAATATAATATAAAA
*
95042809 TACAAA-A-AAATAATAATAAAATAAA
1 TA-AAATATAAATAAT-ATAATATAAA
95042834 CATTTTTACA
Statistics
Matches: 45, Mismatches: 4, Indels: 5
0.83 0.07 0.09
Matches are distributed among these distances:
25 7 0.16
26 30 0.67
27 8 0.18
ACGTcount: A:0.68, C:0.03, G:0.00, T:0.29
Consensus pattern (26 bp):
TAAAATATAAATAATATAATATAAAA
Found at i:95042827 original size:31 final size:31
Alignment explanation
Indices: 95042767--95042832 Score: 75
Period size: 31 Copynumber: 2.1 Consensus size: 31
95042757 AAAATTATAC
*
95042767 ATAATATAATATAAAATAAAATATAAATAAT
1 ATAATATAATATAAAATAAAATATAAATAAA
95042798 ATAATAT-ATAATACAAA-AAAATA-ATAATAAA
1 ATAATATAAT-ATA-AAATAAAATATA-AATAAA
95042829 ATAA
1 ATAA
95042833 ACATTTTTAC
Statistics
Matches: 31, Mismatches: 1, Indels: 6
0.82 0.03 0.16
Matches are distributed among these distances:
30 3 0.10
31 25 0.81
32 3 0.10
ACGTcount: A:0.70, C:0.02, G:0.00, T:0.29
Consensus pattern (31 bp):
ATAATATAATATAAAATAAAATATAAATAAA
Found at i:95042833 original size:5 final size:5
Alignment explanation
Indices: 95042767--95042833 Score: 55
Period size: 5 Copynumber: 13.0 Consensus size: 5
95042757 AAAATTATAC
* * * * *
95042767 ATAAT ATAAT ATAAA ATAAA ATATAA ATAAT ATAAT ATATA ATACAA A-AAA
1 ATAAA ATAAA ATAAA ATAAA ATA-AA ATAAA ATAAA ATAAA ATA-AA ATAAA
95042818 ATAATA ATAAA ATAAA
1 ATAA-A ATAAA ATAAA
95042834 CATTTTTACA
Statistics
Matches: 53, Mismatches: 5, Indels: 8
0.80 0.08 0.12
Matches are distributed among these distances:
4 3 0.06
5 38 0.72
6 12 0.23
ACGTcount: A:0.70, C:0.01, G:0.00, T:0.28
Consensus pattern (5 bp):
ATAAA
Found at i:95046942 original size:46 final size:45
Alignment explanation
Indices: 95046740--95047055 Score: 255
Period size: 45 Copynumber: 7.0 Consensus size: 45
95046730 TAAGAAAGGA
* * * *
95046740 TGCCATAGCGTCTTTCAGCTATGGTCTTAGTTC-TATAT-ATAATGA
1 TGCCATAGCGTCTTTCAGCTATGGTCTTA-TTCAT-TTTCGTCATGT
* * * * * * **
95046785 TGCCATCGCGTCTTTCAGCCATGCTCTTACTC-GTTTCTGACAAAT
1 TGCCATAGCGTCTTTCAGCTATGGTCTTATTCATTTTC-GTCATGT
* * * * *
95046830 TGCCATAGCATTTTTCAACTATGGTCTTATTCATTTTTGTTATGT
1 TGCCATAGCGTCTTTCAGCTATGGTCTTATTCATTTTCGTCATGT
* * **
95046875 T--CATAGCTTCTTTAAGCTATGGTCTTATTTGGTTTTCGTCATGT
1 TGCCATAGCGTCTTTCAGCTATGGTCTTA-TTCATTTTCGTCATGT
* * * **
95046919 TGCCATAGCGTCTTTTAGGTATGGTCTTATTGATTTTTTTCATGT
1 TGCCATAGCGTCTTTCAGCTATGGTCTTATTCATTTTCGTCATGT
* * *
95046964 TGCCATAGTGCCTTTCAGCTATAGTCTTATTCATTTTCGTCATGT
1 TGCCATAGCGTCTTTCAGCTATGGTCTTATTCATTTTCGTCATGT
* * * * *
95047009 TGCCATAGCGTATTTCAGTTATGCTCTTATTCGTTTTCATCATGT
1 TGCCATAGCGTCTTTCAGCTATGGTCTTATTCATTTTCGTCATGT
95047054 TG
1 TG
95047056 GTGATAACAT
Statistics
Matches: 210, Mismatches: 55, Indels: 12
0.76 0.20 0.04
Matches are distributed among these distances:
43 24 0.11
44 15 0.07
45 145 0.69
46 26 0.12
ACGTcount: A:0.18, C:0.19, G:0.17, T:0.46
Consensus pattern (45 bp):
TGCCATAGCGTCTTTCAGCTATGGTCTTATTCATTTTCGTCATGT
Found at i:95054208 original size:34 final size:33
Alignment explanation
Indices: 95054164--95054242 Score: 88
Period size: 34 Copynumber: 2.3 Consensus size: 33
95054154 AAAAAGTCTG
* *
95054164 GGCCTAAGCCC-TTATCAGTAGCAATATCAATGTT
1 GGCCTTAGCCCGTTA-CAGTAACAATATCAATG-T
* *
95054198 GGCCTTAGCCCGTTACGGTAACAGTATCAATGT
1 GGCCTTAGCCCGTTACAGTAACAATATCAATGT
95054231 GGACCTTAGCCC
1 GG-CCTTAGCCC
95054243 AATTCAGTAC
Statistics
Matches: 39, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
33 3 0.08
34 33 0.85
35 3 0.08
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.27
Consensus pattern (33 bp):
GGCCTTAGCCCGTTACAGTAACAATATCAATGT
Found at i:95069197 original size:44 final size:43
Alignment explanation
Indices: 95069133--95069296 Score: 188
Period size: 44 Copynumber: 3.8 Consensus size: 43
95069123 GTACTAATCG
* **
95069133 GGCCTTTGAGCCTAATAGGCTATAATGCCGGTGAAATGATATCT
1 GGCCTTCGAGCCTAGCAGGCTATAATGCCGGTGAAAT-ATATCT
* * *
95069177 GGCCTTTGAGCCTAGCAGGCTATAATACCGGTGAAATACTATTCG
1 GGCCTTCGAGCCTAGCAGGCTATAATGCCGGTGAAATA-TA-TCT
* *
95069222 GGCCTTCGAGCCTAGTAGGCTATAATGCCAGTGAAATAATAT-T
1 GGCCTTCGAGCCTAGCAGGCTATAATGCCGGTGAAAT-ATATCT
* *
95069265 GGGCTTCGAGCCTAGCAGGCGA-AATGCCGGTG
1 GGCCTTCGAGCCTAGCAGGCTATAATGCCGGTG
95069297 GATGAATTCG
Statistics
Matches: 104, Mismatches: 13, Indels: 8
0.83 0.10 0.06
Matches are distributed among these distances:
42 9 0.09
43 20 0.19
44 37 0.36
45 37 0.36
46 1 0.01
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (43 bp):
GGCCTTCGAGCCTAGCAGGCTATAATGCCGGTGAAATATATCT
Found at i:95069242 original size:45 final size:45
Alignment explanation
Indices: 95069124--95069296 Score: 203
Period size: 45 Copynumber: 3.9 Consensus size: 45
95069114 TACCGTACGG
* * **
95069124 TACTAATCGGGCCTTTGAGCCTAATAGGCTATAATGCCGGTGAAA
1 TACTATTCGGGCCTTCGAGCCTAGCAGGCTATAATGCCGGTGAAA
* * *
95069169 TGA-TA-TCTGGCCTTTGAGCCTAGCAGGCTATAATACCGGTGAAA
1 T-ACTATTCGGGCCTTCGAGCCTAGCAGGCTATAATGCCGGTGAAA
* *
95069213 TACTATTCGGGCCTTCGAGCCTAGTAGGCTATAATGCCAGTGAAA
1 TACTATTCGGGCCTTCGAGCCTAGCAGGCTATAATGCCGGTGAAA
* *
95069258 TAATATT-GGG-CTTCGAGCCTAGCAGGCGA-AATGCCGGTG
1 TACTATTCGGGCCTTCGAGCCTAGCAGGCTATAATGCCGGTG
95069297 GATGAATTCG
Statistics
Matches: 112, Mismatches: 13, Indels: 9
0.84 0.10 0.07
Matches are distributed among these distances:
42 9 0.08
43 18 0.16
44 41 0.37
45 43 0.38
46 1 0.01
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.26
Consensus pattern (45 bp):
TACTATTCGGGCCTTCGAGCCTAGCAGGCTATAATGCCGGTGAAA
Found at i:95082711 original size:34 final size:35
Alignment explanation
Indices: 95082642--95082736 Score: 97
Period size: 34 Copynumber: 2.8 Consensus size: 35
95082632 GCAATGTAAA
* * *
95082642 CAGTTTGGGCCTAAGCCC-TTATCAGTAGCAATAT
1 CAGTGTGGGCCTTAGCCCATTATCAGTAACAATAT
* *
95082676 CAGTGTGGGCCTTAGCCCATTA-CGGTAACAGTAT
1 CAGTGTGGGCCTTAGCCCATTATCAGTAACAATAT
* * *
95082710 CAATGTAGGCCTTAGCCCAAT-TCAGTA
1 CAGTGTGGGCCTTAGCCCATTATCAGTA
95082737 TAGTATCAGA
Statistics
Matches: 50, Mismatches: 9, Indels: 4
0.79 0.14 0.06
Matches are distributed among these distances:
34 47 0.94
35 3 0.06
ACGTcount: A:0.26, C:0.24, G:0.22, T:0.27
Consensus pattern (35 bp):
CAGTGTGGGCCTTAGCCCATTATCAGTAACAATAT
Found at i:95088467 original size:34 final size:35
Alignment explanation
Indices: 95088414--95088513 Score: 157
Period size: 35 Copynumber: 2.9 Consensus size: 35
95088404 AATCCAACCA
*
95088414 AAACACACCAGATGCTCATAAGAGCCAATCCATCTG
1 AAACACACCA-ATGCTCATAAGAGCTAATCCATCTG
*
95088450 -AACACACCAATGCTCATAAGAGCTAATCCTTCTG
1 AAACACACCAATGCTCATAAGAGCTAATCCATCTG
*
95088484 AAACACACCAATGCTCATAAAAGCTAATCC
1 AAACACACCAATGCTCATAAGAGCTAATCC
95088514 CTTCGTAACA
Statistics
Matches: 60, Mismatches: 3, Indels: 3
0.91 0.05 0.05
Matches are distributed among these distances:
34 23 0.38
35 37 0.62
ACGTcount: A:0.40, C:0.30, G:0.11, T:0.19
Consensus pattern (35 bp):
AAACACACCAATGCTCATAAGAGCTAATCCATCTG
Found at i:95088524 original size:35 final size:34
Alignment explanation
Indices: 95088415--95088529 Score: 151
Period size: 35 Copynumber: 3.3 Consensus size: 34
95088405 ATCCAACCAA
* *
95088415 AACACACCAGATGCTCATAAGAGCCAATCCATC-T
1 AACACACCA-ATGCTCATAAGAGCTAATCCTTCGT
*
95088449 GAACACACCAATGCTCATAAGAGCTAATCCTTCTGA
1 -AACACACCAATGCTCATAAGAGCTAATCCTTC-GT
*
95088485 AACACACCAATGCTCATAAAAGCTAATCCCTTCGT
1 AACACACCAATGCTCATAAGAGCTAAT-CCTTCGT
95088520 AACACACCAA
1 AACACACCAA
95088530 AAAAAAAGAG
Statistics
Matches: 72, Mismatches: 5, Indels: 6
0.87 0.06 0.07
Matches are distributed among these distances:
34 21 0.29
35 46 0.64
36 5 0.07
ACGTcount: A:0.39, C:0.31, G:0.10, T:0.19
Consensus pattern (34 bp):
AACACACCAATGCTCATAAGAGCTAATCCTTCGT
Found at i:95090937 original size:40 final size:40
Alignment explanation
Indices: 95090860--95091080 Score: 279
Period size: 40 Copynumber: 5.5 Consensus size: 40
95090850 ACCCAAGTAT
* * *
95090860 CTTCGGGATTTAG-CCGGATATA-ACAACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATGC
* * * * *
95090899 CTTCGAGTCTTAGCCTGGATAGAGTCACTAGCATAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
*
95090939 CTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
*
95090979 CTTCGGGACTTAGCCCGGATATAG-CAACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATGC
* *
95091019 CTTC-GGATCTTAGTCCGGATATAGTCACTAGCACAAAAGC
1 CTTCGGGA-CTTAGCCCGGATATAGTCACTAGCACAAATGC
95091059 CTTCGGGACTTAGCCCGGATAT
1 CTTCGGGACTTAGCCCGGATAT
95091081 CATTCGAATA
Statistics
Matches: 156, Mismatches: 20, Indels: 11
0.83 0.11 0.06
Matches are distributed among these distances:
39 14 0.09
40 137 0.88
41 5 0.03
ACGTcount: A:0.27, C:0.26, G:0.23, T:0.24
Consensus pattern (40 bp):
CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
Found at i:95091023 original size:120 final size:119
Alignment explanation
Indices: 95090860--95091080 Score: 356
Period size: 120 Copynumber: 1.8 Consensus size: 119
95090850 ACCCAAGTAT
*
95090860 CTTCGGGATTTAGCCGGATATAACAACTCGCACAAATGCCTTC-GAGTCTTAG-CCTGGATAGAG
1 CTTCGGGACTTAGCCGGATATAACAACTCGCACAAATGCCTTCGGA-TCTTAGTCC-GGATAGAG
* *
95090923 TCACTAGCATAAATGCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAATGC
64 TCACTAGCACAAAAGCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAATGC
* *
95090979 CTTCGGGACTTAGCCCGGATATAGCAACTCGCACAAATGCCTTCGGATCTTAGTCCGGATATAGT
1 CTTCGGGACTTAG-CCGGATATAACAACTCGCACAAATGCCTTCGGATCTTAGTCCGGATAGAGT
95091044 CACTAGCACAAAAGCCTTCGGGACTTAGCCCGGATAT
65 CACTAGCACAAAAGCCTTCGGGACTTAGCCCGGATAT
95091081 CATTCGAATA
Statistics
Matches: 94, Mismatches: 5, Indels: 5
0.90 0.05 0.05
Matches are distributed among these distances:
119 12 0.13
120 78 0.83
121 4 0.04
ACGTcount: A:0.27, C:0.26, G:0.23, T:0.24
Consensus pattern (119 bp):
CTTCGGGACTTAGCCGGATATAACAACTCGCACAAATGCCTTCGGATCTTAGTCCGGATAGAGTC
ACTAGCACAAAAGCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAATGC
Found at i:95098051 original size:50 final size:49
Alignment explanation
Indices: 95097921--95098162 Score: 227
Period size: 50 Copynumber: 4.9 Consensus size: 49
95097911 AGCCGAAGCT
* * * * * *
95097921 ATCTGATACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAACA
1 ATCTGATACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCGACC
* *
95097970 ATCCGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTGACC
1 ATCTGATACACGTAGTAGCCTGCACTTAGTACTACACACGTGACC-GACC
* *
95098020 ATCTGATACACGTAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGTC
1 ATCTGATACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCG-A-CC
* * * * ** *
95098071 AT-TGA-ATATGTATAGTAGCCTGCACTTAGTACTACACATGCGACTTAAC
1 ATCTGATACACG--TAGTAGCCTGCACTTAGTACTACACACGTGACCGACC
* * * *
95098120 AGTATGGTACATGTAGTAGCCTACACTTAGTACTACACACGTG
1 A-TCTGATACACGTAGTAGCCTGCACTTAGTACTACACACGTG
95098163 TACTCACAAT
Statistics
Matches: 160, Mismatches: 25, Indels: 15
0.80 0.12 0.08
Matches are distributed among these distances:
49 45 0.28
50 77 0.48
51 34 0.21
52 4 0.03
ACGTcount: A:0.30, C:0.26, G:0.19, T:0.26
Consensus pattern (49 bp):
ATCTGATACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCGACC
Found at i:95098059 original size:28 final size:28
Alignment explanation
Indices: 95097977--95098060 Score: 92
Period size: 28 Copynumber: 3.2 Consensus size: 28
95097967 ACAATCCGGT
95097977 ACACGTAGTAGCCTGCACTTAGTACTAC
1 ACACGTAGTAGCCTGCACTTAGTACTAC
* *
95098005 ACACGT-G-A-CCTG-AC-CA-T-CTGAT
1 ACACGTAGTAGCCTGCACTTAGTACT-AC
95098027 ACACGTAGTAGCCTGCACTTAGTACTAC
1 ACACGTAGTAGCCTGCACTTAGTACTAC
95098055 ACACGT
1 ACACGT
95098061 GATCGAAGTC
Statistics
Matches: 44, Mismatches: 4, Indels: 16
0.69 0.06 0.25
Matches are distributed among these distances:
21 2 0.05
22 8 0.18
23 2 0.05
24 3 0.07
25 8 0.18
26 3 0.07
27 2 0.05
28 14 0.32
29 2 0.05
ACGTcount: A:0.29, C:0.30, G:0.18, T:0.24
Consensus pattern (28 bp):
ACACGTAGTAGCCTGCACTTAGTACTAC
Found at i:95108283 original size:24 final size:24
Alignment explanation
Indices: 95108251--95108300 Score: 100
Period size: 24 Copynumber: 2.1 Consensus size: 24
95108241 TATGAATACT
95108251 TAGTACTCCAGGTGATAAGGTGTG
1 TAGTACTCCAGGTGATAAGGTGTG
95108275 TAGTACTCCAGGTGATAAGGTGTG
1 TAGTACTCCAGGTGATAAGGTGTG
95108299 TA
1 TA
95108301 CTTCTACCCT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.26, C:0.12, G:0.32, T:0.30
Consensus pattern (24 bp):
TAGTACTCCAGGTGATAAGGTGTG
Found at i:95108396 original size:16 final size:16
Alignment explanation
Indices: 95108375--95108406 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
95108365 TCAACAAATC
95108375 CTGAAATGCCGAAAAG
1 CTGAAATGCCGAAAAG
*
95108391 CTGAAATGTCGAAAAG
1 CTGAAATGCCGAAAAG
95108407 TCAGAAGTCT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.44, C:0.16, G:0.25, T:0.16
Consensus pattern (16 bp):
CTGAAATGCCGAAAAG
Found at i:95109015 original size:27 final size:26
Alignment explanation
Indices: 95108985--95109089 Score: 77
Period size: 27 Copynumber: 3.9 Consensus size: 26
95108975 GTAATAAAGA
95108985 AAAATTACAAAAATACCCCTGATTTAC
1 AAAATTAC-AAAATACCCCTGATTTAC
* ** *
95109012 AAAATTACTAAAACACCATTGGTTTAC
1 AAAATTAC-AAAATACCCCTGATTTAC
** * **
95109039 AAAATTACTGAATA-CCCTCGACTTGT
1 AAAATTACAAAATACCCCT-GATTTAC
*
95109065 AAAATTACCAAAATACCCCTAATTT
1 AAAATTA-CAAAATACCCCTGATTT
95109090 GTGAAATTAC
Statistics
Matches: 57, Mismatches: 18, Indels: 6
0.70 0.22 0.07
Matches are distributed among these distances:
25 2 0.04
26 13 0.23
27 38 0.67
28 4 0.07
ACGTcount: A:0.44, C:0.22, G:0.06, T:0.29
Consensus pattern (26 bp):
AAAATTACAAAATACCCCTGATTTAC
Found at i:95109173 original size:27 final size:27
Alignment explanation
Indices: 95109039--95109180 Score: 144
Period size: 27 Copynumber: 5.3 Consensus size: 27
95109029 ATTGGTTTAC
95109039 AAAATTACTG-AATACCCTCGACTTGT
1 AAAATTACTGAAATACCCTCGACTTGT
** * *
95109065 AAAATTACCAAAATACCC-CTAATTTGT
1 AAAATTACTGAAATACCCTC-GACTTGT
* * * * *
95109092 GAAATTACCGAAATACCCTGGACCTAT
1 AAAATTACTGAAATACCCTCGACTTGT
* *
95109119 ACAATTACTGAAATACCCTCGACCTGT
1 AAAATTACTGAAATACCCTCGACTTGT
* *
95109146 ACAATTATTGAAATACCCTCGACTTGT
1 AAAATTACTGAAATACCCTCGACTTGT
95109173 AAAATTAC
1 AAAATTAC
95109181 CAAAATGCCC
Statistics
Matches: 93, Mismatches: 20, Indels: 5
0.79 0.17 0.04
Matches are distributed among these distances:
26 9 0.10
27 84 0.90
ACGTcount: A:0.38, C:0.24, G:0.10, T:0.28
Consensus pattern (27 bp):
AAAATTACTGAAATACCCTCGACTTGT
Found at i:95109179 original size:54 final size:54
Alignment explanation
Indices: 95109040--95109194 Score: 163
Period size: 54 Copynumber: 2.9 Consensus size: 54
95109030 TTGGTTTACA
**
95109040 AAATTACTG-AATACCCTCGACTTGTAAAATTACCAAAATACCCCTAATTTGTG
1 AAATTACTGAAATACCCTCGACTTGTAAAATTACCAAAATACCCCTAACCTGTG
* * * * * ** *
95109093 AAATTACCGAAATACCCTGGACCTATACAATTACTGAAATA-CCCTCGACCTGT-
1 AAATTACTGAAATACCCTCGACTTGTAAAATTACCAAAATACCCCT-AACCTGTG
* *
95109146 ACAATTATTGAAATACCCTCGACTTGTAAAATTACCAAAATGCCCCTAA
1 A-AATTACTGAAATACCCTCGACTTGTAAAATTACCAAAATACCCCTAA
95109195 GGGTGAGAAT
Statistics
Matches: 78, Mismatches: 20, Indels: 7
0.74 0.19 0.07
Matches are distributed among these distances:
53 13 0.17
54 61 0.78
55 4 0.05
ACGTcount: A:0.38, C:0.25, G:0.10, T:0.27
Consensus pattern (54 bp):
AAATTACTGAAATACCCTCGACTTGTAAAATTACCAAAATACCCCTAACCTGTG
Found at i:95125743 original size:34 final size:34
Alignment explanation
Indices: 95125697--95125778 Score: 94
Period size: 34 Copynumber: 2.4 Consensus size: 34
95125687 GTAAACATTT
* * *
95125697 TGGGCCTAAGCCC-TTATCAGTAGCAATATCAGTG
1 TGGGCCTTAGCCCATTA-CAGTAACAATATCAATG
* *
95125731 TGGGCCTTAGCCCATTACGGTAACAGTATCAATG
1 TGGGCCTTAGCCCATTACAGTAACAATATCAATG
*
95125765 TAGGCCTTAGCCCA
1 TGGGCCTTAGCCCA
95125779 ATTCAATACA
Statistics
Matches: 41, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
34 38 0.93
35 3 0.07
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.26
Consensus pattern (34 bp):
TGGGCCTTAGCCCATTACAGTAACAATATCAATG
Found at i:95137117 original size:16 final size:16
Alignment explanation
Indices: 95137096--95137129 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
95137086 TCAACAAATC
*
95137096 CTAAAATGCTGAAAAG
1 CTAAAATGCCGAAAAG
95137112 CTAAAATGCCGAAAAG
1 CTAAAATGCCGAAAAG
95137128 CT
1 CT
95137130 GAAAGTCTGG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.47, C:0.18, G:0.18, T:0.18
Consensus pattern (16 bp):
CTAAAATGCCGAAAAG
Found at i:95137427 original size:28 final size:29
Alignment explanation
Indices: 95137366--95137434 Score: 95
Period size: 28 Copynumber: 2.4 Consensus size: 29
95137356 TTCGGGCTAC
* *
95137366 ATGGGCCATATGAATGTGATTTGGGGCGA
1 ATGGGCCATATGAATGAGATTTGGGCCGA
*
95137395 ATGGGCCATATGAATGAGA-TTGGGCCTA
1 ATGGGCCATATGAATGAGATTTGGGCCGA
*
95137423 GTGGGCCATATG
1 ATGGGCCATATG
95137435 CATATATTTA
Statistics
Matches: 36, Mismatches: 4, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
28 18 0.50
29 18 0.50
ACGTcount: A:0.25, C:0.13, G:0.36, T:0.26
Consensus pattern (29 bp):
ATGGGCCATATGAATGAGATTTGGGCCGA
Found at i:95137773 original size:27 final size:27
Alignment explanation
Indices: 95137734--95137858 Score: 117
Period size: 27 Copynumber: 4.7 Consensus size: 27
95137724 GTAATAAAGA
*
95137734 AAAATTACAGAAATACCCCTAATTTAC
1 AAAATTACTGAAATACCCCTAATTTAC
* * **
95137761 AAAATTATTGAAATACCCTTGGTTTAC
1 AAAATTACTGAAATACCCCTAATTTAC
* * **
95137788 AAAATTACTG-AATACCCTTAACTTGT
1 AAAATTACTGAAATACCCCTAATTTAC
** **
95137814 AAAATTACCAAAATACCCCTAATTTGT
1 AAAATTACTGAAATACCCCTAATTTAC
*
95137841 GAAATTACTGAAATACCC
1 AAAATTACTGAAATACCC
95137859 TCGACCTGTA
Statistics
Matches: 79, Mismatches: 18, Indels: 2
0.80 0.18 0.02
Matches are distributed among these distances:
26 19 0.24
27 60 0.76
ACGTcount: A:0.42, C:0.20, G:0.07, T:0.30
Consensus pattern (27 bp):
AAAATTACTGAAATACCCCTAATTTAC
Found at i:95137873 original size:27 final size:27
Alignment explanation
Indices: 95137788--95137908 Score: 86
Period size: 27 Copynumber: 4.5 Consensus size: 27
95137778 CTTGGTTTAC
** *
95137788 AAAATTACTG-AATACCCTTAACTTGT
1 AAAATTACTGAAATACCCTCGACCTGT
** * **
95137814 AAAATTACCAAAATACCC-CTAATTTGT
1 AAAATTACTGAAATACCCTC-GACCTGT
*
95137841 GAAATTACTGAAATACCCTCGACCTGT
1 AAAATTACTGAAATACCCTCGACCTGT
* * *
95137868 ACAATTA-TCGAAATACCCTTGACTTGT
1 AAAATTACT-GAAATACCCTCGACCTGT
*
95137895 AAAATTACCGAAAT
1 AAAATTACTGAAAT
95137909 GCCCCTAAGG
Statistics
Matches: 74, Mismatches: 16, Indels: 9
0.75 0.16 0.09
Matches are distributed among these distances:
26 9 0.12
27 64 0.86
28 1 0.01
ACGTcount: A:0.40, C:0.21, G:0.09, T:0.30
Consensus pattern (27 bp):
AAAATTACTGAAATACCCTCGACCTGT
Found at i:95137874 original size:80 final size:80
Alignment explanation
Indices: 95137734--95137916 Score: 203
Period size: 80 Copynumber: 2.3 Consensus size: 80
95137724 GTAATAAAGA
* * * *
95137734 AAAATTA-CAGAAATACCCCTAATTTACAAAATTATTGAAATACCCTTGGTTTACAAAATTA-CT
1 AAAATTACCA-AAATACCCCTAATTTACAAAATTACTGAAATACCCTCGCTGTAC-AAATTATC-
95137797 G-AATACCCTTAACTTGT
63 GAAATACCCTTAACTTGT
***
95137814 AAAATTACCAAAATACCCCTAATTTGTGAAATTACTGAAATACCCTCGACCTGTAC-AATTATCG
1 AAAATTACCAAAATACCCCTAATTTACAAAATTACTGAAATACCCTCG--CTGTACAAATTATCG
*
95137878 AAATACCCTTGACTTGT
64 AAATACCCTTAACTTGT
* *
95137895 AAAATTACCGAAATGCCCCTAA
1 AAAATTACCAAAATACCCCTAA
95137917 GGGTGAGAAT
Statistics
Matches: 88, Mismatches: 10, Indels: 9
0.82 0.09 0.08
Matches are distributed among these distances:
80 46 0.52
81 38 0.43
82 4 0.05
ACGTcount: A:0.40, C:0.22, G:0.09, T:0.30
Consensus pattern (80 bp):
AAAATTACCAAAATACCCCTAATTTACAAAATTACTGAAATACCCTCGCTGTACAAATTATCGAA
ATACCCTTAACTTGT
Found at i:95137882 original size:54 final size:54
Alignment explanation
Indices: 95137788--95137908 Score: 136
Period size: 54 Copynumber: 2.3 Consensus size: 54
95137778 CTTGGTTTAC
* * *
95137788 AAAATTACTG-AATACCCTTAACTTGTAAAATTACCAAAATACCCCTAATTTGT
1 AAAATTACTGAAATACCCTCAACCTGTAAAATTACCAAAATACCCCTAACTTGT
* * * * * * *
95137841 GAAATTACTGAAATACCCTCGACCTGTACAATTATCGAAATACCCTTGACTTGT
1 AAAATTACTGAAATACCCTCAACCTGTAAAATTACCAAAATACCCCTAACTTGT
*
95137895 AAAATTACCGAAAT
1 AAAATTACTGAAAT
95137909 GCCCCTAAGG
Statistics
Matches: 55, Mismatches: 12, Indels: 1
0.81 0.18 0.01
Matches are distributed among these distances:
53 9 0.16
54 46 0.84
ACGTcount: A:0.40, C:0.21, G:0.09, T:0.30
Consensus pattern (54 bp):
AAAATTACTGAAATACCCTCAACCTGTAAAATTACCAAAATACCCCTAACTTGT
Found at i:95138396 original size:16 final size:16
Alignment explanation
Indices: 95138375--95138406 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
95138365 CCCAAAATGA
95138375 CTAATGATTGCTTTAT
1 CTAATGATTGCTTTAT
95138391 CTAATGATTGCTTTAT
1 CTAATGATTGCTTTAT
95138407 ACTCTTTAAG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.25, C:0.12, G:0.12, T:0.50
Consensus pattern (16 bp):
CTAATGATTGCTTTAT
Found at i:95140258 original size:40 final size:39
Alignment explanation
Indices: 95140221--95140438 Score: 224
Period size: 40 Copynumber: 5.5 Consensus size: 39
95140211 ATATCCGGAC
95140221 TAAGATCCGAAGGCATTTGTGCGAGATAC-AAATTCCGGGT
1 TAAG-TCCGAAGGCATTTGTGCGAGATACTAAA-TCCGGGT
* *
95140261 TAAGCCCCGAAGGCCTTTGTGCGAGATACTAAATCCGGGT
1 TAAG-TCCGAAGGCATTTGTGCGAGATACTAAATCCGGGT
* * * *
95140301 TAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGAGT
1 TAAGT-CCGAAGGCATTTGTGCGAGATACTAAATCCGGGT
* * *
95140341 TAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGT
1 TAAGT-CCGAAGGCATTTGTGCGAGATACTAAATCCGGGT
* * * * *
95140381 TATGTCCCGAAGGCA-TTGTGTGAGTTACTAAAACCGGGC
1 TAAGT-CCGAAGGCATTTGTGCGAGATACTAAATCCGGGT
*
95140420 TATGTCCTGAAGGCATTTG
1 TAAGTCC-GAAGGCATTTG
95140439 AACGAGGAGC
Statistics
Matches: 158, Mismatches: 16, Indels: 8
0.87 0.09 0.04
Matches are distributed among these distances:
38 2 0.01
39 31 0.20
40 122 0.77
41 3 0.02
ACGTcount: A:0.26, C:0.20, G:0.27, T:0.27
Consensus pattern (39 bp):
TAAGTCCGAAGGCATTTGTGCGAGATACTAAATCCGGGT
Found at i:95148377 original size:20 final size:20
Alignment explanation
Indices: 95148340--95148377 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
95148330 TGTGGATTCC
**
95148340 ACACGCCCGTGTGGCTTGGG
1 ACACGCCCGTGTCCCTTGGG
95148360 ACACGCCCGTGTCCCTTG
1 ACACGCCCGTGTCCCTTG
95148378 TCCGTGGGGC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.11, C:0.37, G:0.32, T:0.21
Consensus pattern (20 bp):
ACACGCCCGTGTCCCTTGGG
Found at i:95163213 original size:33 final size:33
Alignment explanation
Indices: 95163151--95163213 Score: 81
Period size: 33 Copynumber: 1.9 Consensus size: 33
95163141 AAGGCCCACA
** *
95163151 CAGTTACTGTATAGGGCTAAAGCCTAGACTGTT
1 CAGTTACTAAATAGGGCTAAAGCCCAGACTGTT
**
95163184 CAGTTACTAAATAGGGCTATGGCCCAGACT
1 CAGTTACTAAATAGGGCTAAAGCCCAGACT
95163214 ATTTTGCATG
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
33 25 1.00
ACGTcount: A:0.29, C:0.21, G:0.24, T:0.27
Consensus pattern (33 bp):
CAGTTACTAAATAGGGCTAAAGCCCAGACTGTT
Found at i:95167148 original size:28 final size:28
Alignment explanation
Indices: 95167085--95167182 Score: 128
Period size: 27 Copynumber: 3.5 Consensus size: 28
95167075 ATATTAAGTC
*
95167085 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
95167112 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * *
95167140 CGCACACTTAGTGCTGA-ACAATTTAAACC
1 CGCACACTTAGTGCT-ATATAA-TCAAACT
95167169 CGCACACTTAGTGC
1 CGCACACTTAGTGC
95167183 CAATCTCATG
Statistics
Matches: 64, Mismatches: 4, Indels: 4
0.89 0.06 0.06
Matches are distributed among these distances:
27 22 0.34
28 22 0.34
29 20 0.31
ACGTcount: A:0.33, C:0.29, G:0.13, T:0.26
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:95178921 original size:40 final size:40
Alignment explanation
Indices: 95178831--95179050 Score: 250
Period size: 40 Copynumber: 5.5 Consensus size: 40
95178821 ACCCAAGTAT
* * ** * *
95178831 CTTCGAGATTTAG-CCGGATATAACCACTCGCAC-AAGGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
* * * *
95178869 CTTCAGGTCTTAGCCCGGATATGGTCACTAGCATAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
*
95178909 CTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
* *
95178949 CTTCGGGTCTTAGCCCGGATATAG-CAACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATGC
* * *
95178989 CTTC-GGATCTTAGTCCGGATATAGTCACTAGCATAAAAGC
1 CTTCGGGA-CTTAGCCCGGATATAGTCACTAGCACAAATGC
95179029 CTTCGGGACTTAGCCCGGATAT
1 CTTCGGGACTTAGCCCGGATAT
95179051 CATTCGAATA
Statistics
Matches: 152, Mismatches: 24, Indels: 10
0.82 0.13 0.05
Matches are distributed among these distances:
38 9 0.06
39 18 0.12
40 121 0.80
41 4 0.03
ACGTcount: A:0.26, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
Found at i:95184387 original size:37 final size:37
Alignment explanation
Indices: 95184325--95184433 Score: 173
Period size: 37 Copynumber: 2.9 Consensus size: 37
95184315 AGCTCAGACG
* * *
95184325 AAATCTCCACACGAAGTTATTGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
95184362 AAATCTCCACACGTAGTCATCGGGTCTTACCTGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
95184399 TAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
95184434 ATATATTTCC
Statistics
Matches: 66, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
37 66 1.00
ACGTcount: A:0.27, C:0.29, G:0.19, T:0.25
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:95184691 original size:47 final size:47
Alignment explanation
Indices: 95184639--95184832 Score: 280
Period size: 47 Copynumber: 4.1 Consensus size: 47
95184629 CATACATATT
* * * *
95184639 TCACATTAGCCATTCGGCTTTACCACATATATGCATGTTCATATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* * *
95184686 TCACATTGGCCATTCGACCTTATCACACATATGCATGCTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
*
95184733 TCGCATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* * **
95184780 TCACATTGGCCATTCGGCCTTATCTCATATATACACATTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
95184827 TCACAT
1 TCACAT
95184833 AAAATCCTAA
Statistics
Matches: 131, Mismatches: 16, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
47 131 1.00
ACGTcount: A:0.27, C:0.29, G:0.11, T:0.34
Consensus pattern (47 bp):
TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
Found at i:95188653 original size:48 final size:46
Alignment explanation
Indices: 95188597--95188811 Score: 161
Period size: 46 Copynumber: 4.6 Consensus size: 46
95188587 CATTACACGC
* * * *
95188597 CATGTCCCAAATAGGTCTTATACTAGCTTCTATATCGTGAGGCCGATG
1 CATGTCCCAGACATGTCTTACACTAGCTTCTATATC-T-AGGCCGATG
* **
95188645 CATGTCCCAGACATGTCTTACACTAGCTCTCGT-T-TCAATACCGATG
1 CATGTCCCAGACATGTCTTACACTAGCT-TC-TATATCTAGGCCGATG
**
95188691 CATGTCCCAGACATGTCTTACACTAGCTTAAATATCTCAAGGCCGATG
1 CATGTCCCAGACATGTCTTACACTAGCTTCTATATCT--AGGCCGATG
* * * **
95188739 CATGTCCCATACATGT-TATACACTGGC-TCTCATA-CTGTGGTTGATG
1 CATGTCCCAGACATGTCT-TACACTAGCTTCT-ATATCT-AGGCCGATG
* * *
95188785 AATATCCTAGACATGTCTTACACTAGC
1 CATGTCCCAGACATGTCTTACACTAGC
95188812 ACACATATCA
Statistics
Matches: 133, Mismatches: 25, Indels: 20
0.75 0.14 0.11
Matches are distributed among these distances:
45 2 0.02
46 63 0.47
47 5 0.04
48 59 0.44
49 3 0.02
50 1 0.01
ACGTcount: A:0.26, C:0.26, G:0.17, T:0.31
Consensus pattern (46 bp):
CATGTCCCAGACATGTCTTACACTAGCTTCTATATCTAGGCCGATG
Found at i:95189463 original size:30 final size:30
Alignment explanation
Indices: 95189427--95189487 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
95189417 TCCTTAACTC
95189427 AAACTTTGGAAAATTTACAAATTTGCCCCT
1 AAACTTTGGAAAATTTACAAATTTGCCCCT
* * * **
95189457 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGAAAATTTACAAATTTGCCCCT
95189487 A
1 A
95189488 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGAAAATTTACAAATTTGCCCCT
Found at i:95195994 original size:25 final size:25
Alignment explanation
Indices: 95195966--95196035 Score: 122
Period size: 25 Copynumber: 2.8 Consensus size: 25
95195956 CTCTTTTAAT
95195966 AACTGGGGCAAAGCCCTTTTCGGTA
1 AACTGGGGCAAAGCCCTTTTCGGTA
95195991 AACTGGGGCAAAGCCCTTTTCGGTA
1 AACTGGGGCAAAGCCCTTTTCGGTA
* *
95196016 AACTGGGGCATAGTCCTTTT
1 AACTGGGGCAAAGCCCTTTT
95196036 AGCACTTCCT
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 43 1.00
ACGTcount: A:0.23, C:0.23, G:0.27, T:0.27
Consensus pattern (25 bp):
AACTGGGGCAAAGCCCTTTTCGGTA
Found at i:95196268 original size:27 final size:27
Alignment explanation
Indices: 95196238--95196479 Score: 290
Period size: 27 Copynumber: 9.0 Consensus size: 27
95196228 GGGGCAAAAT
* * *
95196238 GGTAATTTTACCCCACAAGGGTATCTC
1 GGTAATTCTACCCTACAAGGGTATTTC
95196265 GGTAATTCTACCCTAC-AGGGCTATTTC
1 GGTAATTCTACCCTACAAGGG-TATTTC
*
95196292 GGTATTTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* * *
95196319 GGTAATTCTACCTTATAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* * * *
95196346 AGTAATTCTACCCTATAGGGGTATTTT
1 GGTAATTCTACCCTACAAGGGTATTTC
* * *
95196373 AGTAATTCTACCTTA-TAGGGTTATTTC
1 GGTAATTCTACCCTACAAGGG-TATTTC
*
95196400 AGTAATTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
95196427 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
95196454 GATAATTCTACCCTACAGGGGTATTT
1 GGTAATTCTACCCTACAAGGGTATTT
95196480 TGATATTTTA
Statistics
Matches: 191, Mismatches: 20, Indels: 8
0.87 0.09 0.04
Matches are distributed among these distances:
26 7 0.04
27 176 0.92
28 8 0.04
ACGTcount: A:0.25, C:0.20, G:0.19, T:0.36
Consensus pattern (27 bp):
GGTAATTCTACCCTACAAGGGTATTTC
Found at i:95196304 original size:54 final size:54
Alignment explanation
Indices: 95196239--95196479 Score: 322
Period size: 54 Copynumber: 4.5 Consensus size: 54
95196229 GGGCAAAATG
* * * * *
95196239 GTAATTTTACCCCACAAGGGTATCTCGGTAATTCTACCCTACAGGGCTATTTCG
1 GTAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCA
* * *
95196293 GTATTTCTACCCTACAAGGGTATTTCGGTAATTCTACCTTATAGGGGTATTTCA
1 GTAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCA
* * ** * * *
95196347 GTAATTCTACCCTATAGGGGTATTTTAGTAATTCTACCTTATAGGGTTATTTCA
1 GTAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCA
95196401 GTAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTC-
1 GTAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCA
*
95196454 GATAATTCTACCCTACAGGGGTATTT
1 G-TAATTCTACCCTACAAGGGTATTT
95196480 TGATATTTTA
Statistics
Matches: 164, Mismatches: 22, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
53 1 0.01
54 163 0.99
ACGTcount: A:0.25, C:0.20, G:0.18, T:0.37
Consensus pattern (54 bp):
GTAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCA
Found at i:95196522 original size:27 final size:28
Alignment explanation
Indices: 95196470--95196689 Score: 213
Period size: 27 Copynumber: 8.1 Consensus size: 28
95196460 TCTACCCTAC
*
95196470 AGGGGTATTTTGAT-ATTTTACAAATCG
1 AGGGGTATTTTGGTAATTTTACAAATCG
* * *
95196497 A-GAGTATTTTGATAATTTCACAAATC-
1 AGGGGTATTTTGGTAATTTTACAAATCG
* *
95196523 AGGGGTATTTTGGTAATTTTAC-AAGCT
1 AGGGGTATTTTGGTAATTTTACAAATCG
*
95196550 AGGGGTATTTTGGTAATTTTACAAA-CC
1 AGGGGTATTTTGGTAATTTTACAAATCG
* *
95196577 AGGGGTATTTTAGTAATTTTACAAA-CC
1 AGGGGTATTTTGGTAATTTTACAAATCG
* **
95196604 AAGGGTATTTTGGTAATTTTACTGATCG
1 AGGGGTATTTTGGTAATTTTACAAATCG
** *
95196632 A-GGGTATTTTGGTAATTTTGTAAA-CC
1 AGGGGTATTTTGGTAATTTTACAAATCG
* * **
95196658 AAGGGTATTTTAGTAATTTTGTAAATCG
1 AGGGGTATTTTGGTAATTTTACAAATCG
95196686 AGGG
1 AGGG
95196690 TGAACGGTAA
Statistics
Matches: 165, Mismatches: 21, Indels: 13
0.83 0.11 0.07
Matches are distributed among these distances:
26 17 0.10
27 140 0.85
28 8 0.05
ACGTcount: A:0.30, C:0.08, G:0.22, T:0.40
Consensus pattern (28 bp):
AGGGGTATTTTGGTAATTTTACAAATCG
Found at i:95196690 original size:27 final size:27
Alignment explanation
Indices: 95196472--95196879 Score: 175
Period size: 27 Copynumber: 15.2 Consensus size: 27
95196462 TACCCTACAG
* **
95196472 GGGTATTTTGAT-ATTTTACAAATCGA
1 GGGTATTTTGGTAATTTTGTAAATCGA
* * ***
95196498 GAGTATTTTGATAATTTCACAAATC-A
1 GGGTATTTTGGTAATTTTGTAAATCGA
* *
95196524 GGGGTATTTTGGTAA-TTT-TACAAGCTA
1 -GGGTATTTTGGTAATTTTGTA-AATCGA
** *
95196551 GGGGTATTTTGGTAATTTTACAAA-CCA
1 -GGGTATTTTGGTAATTTTGTAAATCGA
* ** * *
95196578 GGGGTATTTTAGTAATTTTACAAACCAA
1 -GGGTATTTTGGTAATTTTGTAAATCGA
* *
95196606 GGGTATTTTGGTAATTTTACT-GATCGA
1 GGGTATTTTGGTAATTTT-GTAAATCGA
* *
95196633 GGGTATTTTGGTAATTTTGTAAACCAA
1 GGGTATTTTGGTAATTTTGTAAATCGA
*
95196660 GGGTATTTTAGTAATTTTGTAAATCGA
1 GGGTATTTTGGTAATTTTGTAAATCGA
**
95196687 GGGTGA--ACGGTAATTTTGTAAATCGA
1 GGGT-ATTTTGGTAATTTTGTAAATCGA
*** *
95196713 GGGTAAAATGGTAATTCTGTAAATCGA
1 GGGTATTTTGGTAATTTTGTAAATCGA
**** * *
95196740 GGGTAACACGGTAATTCTATAAATCGA
1 GGGTATTTTGGTAATTTTGTAAATCGA
**** * * * *
95196767 GGGTAAAACGATAATTCTATAAATTGA
1 GGGTATTTTGGTAATTTTGTAAATCGA
*** * *
95196794 GGGTAAGATGGTAATTCTATAAATCGA
1 GGGTATTTTGGTAATTTTGTAAATCGA
**** * *
95196821 GGGTAAAACGGTAATTCTATAAATCGA
1 GGGTATTTTGGTAATTTTGTAAATCGA
**** *
95196848 GGGTAAAACGGTAATTCTGTAAATCGA
1 GGGTATTTTGGTAATTTTGTAAATCGA
95196875 GGGTA
1 GGGTA
95196880 AAACGGTAAT
Statistics
Matches: 328, Mismatches: 42, Indels: 23
0.83 0.11 0.06
Matches are distributed among these distances:
25 2 0.01
26 39 0.12
27 278 0.85
28 8 0.02
29 1 0.00
ACGTcount: A:0.34, C:0.09, G:0.23, T:0.35
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTGTAAATCGA
Found at i:95196690 original size:81 final size:81
Alignment explanation
Indices: 95196470--95196677 Score: 260
Period size: 81 Copynumber: 2.6 Consensus size: 81
95196460 TCTACCCTAC
* * * * * * *
95196470 AGGGGTATTTTGAT-ATTTTACAAATCGAGAGTATTTT-GATAATTTCACAAATCAGGGGTATTT
1 AGGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTAG-TAATTTTACAAACCAAGGGTATTT
*
95196533 TGGTAATTTTACAAGCT
65 TGGTAATTTTACAAGCG
*
95196550 AGGGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTAGTAATTTTACAAACCAAGGGTATTTT
1 AGGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTAGTAATTTTACAAACCAAGGGTATTTT
* *
95196615 GGTAATTTTACTGATCG
66 GGTAATTTTAC-AAGCG
**
95196632 A-GGGTATTTTGGTAATTTTGTAAACCAAGGGTATTTTAGTAATTTT
1 AGGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTAGTAATTTT
95196678 GTAAATCGAG
Statistics
Matches: 111, Mismatches: 14, Indels: 5
0.85 0.11 0.04
Matches are distributed among these distances:
80 13 0.12
81 94 0.85
82 4 0.04
ACGTcount: A:0.30, C:0.08, G:0.21, T:0.41
Consensus pattern (81 bp):
AGGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTAGTAATTTTACAAACCAAGGGTATTTT
GGTAATTTTACAAGCG
Found at i:95196880 original size:27 final size:27
Alignment explanation
Indices: 95196670--95196904 Score: 319
Period size: 27 Copynumber: 8.7 Consensus size: 27
95196660 GGGTATTTTA
* * *
95196670 GTAATTTTGTAAATCGAGGGT-GAACG
1 GTAATTCTATAAATCGAGGGTAAAACG
* * *
95196696 GTAATTTTGTAAATCGAGGGTAAAATG
1 GTAATTCTATAAATCGAGGGTAAAACG
* *
95196723 GTAATTCTGTAAATCGAGGGTAACACG
1 GTAATTCTATAAATCGAGGGTAAAACG
95196750 GTAATTCTATAAATCGAGGGTAAAACG
1 GTAATTCTATAAATCGAGGGTAAAACG
* * * *
95196777 ATAATTCTATAAATTGAGGGTAAGATG
1 GTAATTCTATAAATCGAGGGTAAAACG
95196804 GTAATTCTATAAATCGAGGGTAAAACG
1 GTAATTCTATAAATCGAGGGTAAAACG
95196831 GTAATTCTATAAATCGAGGGTAAAACG
1 GTAATTCTATAAATCGAGGGTAAAACG
*
95196858 GTAATTCTGTAAATCGAGGGTAAAACG
1 GTAATTCTATAAATCGAGGGTAAAACG
* * *
95196885 GTAATTTTACAAATTGAGGG
1 GTAATTCTATAAATCGAGGG
95196905 CATTTCAGTA
Statistics
Matches: 188, Mismatches: 20, Indels: 1
0.90 0.10 0.00
Matches are distributed among these distances:
26 21 0.11
27 167 0.89
ACGTcount: A:0.37, C:0.09, G:0.25, T:0.29
Consensus pattern (27 bp):
GTAATTCTATAAATCGAGGGTAAAACG
Found at i:95198816 original size:24 final size:24
Alignment explanation
Indices: 95198672--95198815 Score: 209
Period size: 24 Copynumber: 6.0 Consensus size: 24
95198662 GCTTAATCAT
*
95198672 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
*
95198697 ATAACTGGGGCAAAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
95198721 ATAACTGGGGCATAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
*
95198745 ATAGCTGGGGCATAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
** *
95198769 ATAACTGAAGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
95198793 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
95198816 GCACTTCTTC
Statistics
Matches: 108, Mismatches: 10, Indels: 3
0.89 0.08 0.02
Matches are distributed among these distances:
24 96 0.89
25 12 0.11
ACGTcount: A:0.28, C:0.22, G:0.21, T:0.29
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:95198890 original size:20 final size:20
Alignment explanation
Indices: 95198865--95198931 Score: 116
Period size: 20 Copynumber: 3.4 Consensus size: 20
95198855 TTATGAATAC
95198865 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
95198885 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
95198905 GTCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
95198925 ACCATGT
1 ATCATGT
95198932 TTATCAAAAT
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 44 1.00
ACGTcount: A:0.33, C:0.21, G:0.12, T:0.34
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:95198896 original size:11 final size:11
Alignment explanation
Indices: 95198865--95198920 Score: 57
Period size: 11 Copynumber: 5.5 Consensus size: 11
95198855 TTATGAATAC
95198865 ATCATGTGCAT
1 ATCATGTGCAT
*
95198876 ATCA--TACAT
1 ATCATGTGCAT
95198885 ATCATGTGCAT
1 ATCATGTGCAT
*
95198896 ATCA--TACAT
1 ATCATGTGCAT
*
95198905 GTCATGTGCAT
1 ATCATGTGCAT
95198916 ATCAT
1 ATCAT
95198921 ACATACCATG
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
9 15 0.43
11 20 0.57
ACGTcount: A:0.32, C:0.20, G:0.12, T:0.36
Consensus pattern (11 bp):
ATCATGTGCAT
Found at i:95212601 original size:50 final size:49
Alignment explanation
Indices: 95212485--95212716 Score: 311
Period size: 49 Copynumber: 4.7 Consensus size: 49
95212475 CTGGTACGCA
* *
95212485 TAGTAGCCTGCACTTAGTACTACAGATGCGACCAATTATCCGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACATGTGACCAATTATCCGGTACACG
* ** * *
95212534 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATCTGATACACG
1 TAGTAGCCTGCACTTAGTACTACACATGTGACC-AATTATCCGGTACACG
* * * * *
95212584 TAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGTTATCGGGTACGCA
1 TAGTAGCCTGCACTTAGTACTACACATGTGA-CCAA-TTATCCGGTACACG
*
95212635 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACATGTGACCAATTATCCGGTACACG
*
95212684 TAGTAGCCTACACTTAGTACTACACATGTGACC
1 TAGTAGCCTGCACTTAGTACTACACATGTGACC
95212717 TCACAATAGA
Statistics
Matches: 158, Mismatches: 22, Indels: 6
0.85 0.12 0.03
Matches are distributed among these distances:
49 72 0.46
50 48 0.30
51 38 0.24
ACGTcount: A:0.29, C:0.27, G:0.19, T:0.25
Consensus pattern (49 bp):
TAGTAGCCTGCACTTAGTACTACACATGTGACCAATTATCCGGTACACG
Found at i:95217862 original size:49 final size:49
Alignment explanation
Indices: 95217685--95217880 Score: 221
Period size: 50 Copynumber: 3.9 Consensus size: 49
95217675 TAGCCAAAGC
* * *
95217685 TATCTGGTACGCATAGTAGCCTGCACTTAGTACTACACACGTGACCTAAC
1 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACC-AAT
* ** * **
95217735 CATCTATTACACGTAGTAGCCTGCACTTAGTACTACACGCGTGATTGAAGT
1 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGA-CCAA-T
* * * * *
95217786 TATCAGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAAT
1 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCAAT
* *
95217835 TATCTGGTACATGTAGTAGCCTACACTTAGTACTACACACGTGACC
1 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACC
95217881 TCACAATAGA
Statistics
Matches: 117, Mismatches: 27, Indels: 5
0.79 0.18 0.03
Matches are distributed among these distances:
49 40 0.34
50 42 0.36
51 35 0.30
ACGTcount: A:0.29, C:0.26, G:0.18, T:0.27
Consensus pattern (49 bp):
TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCAAT
Found at i:95227749 original size:43 final size:43
Alignment explanation
Indices: 95227623--95227780 Score: 153
Period size: 43 Copynumber: 3.7 Consensus size: 43
95227613 ATGTGTTATT
*
95227623 GTGTAAGACCACT-TTTGGGAC-GTTGGCATCGAT-TTGTGATTTAC
1 GTGTAAGACCA-TGTCTGGGACAG-TGGCATCGATATT-TGATTT-C
* * * *
95227667 GTGTAAGACCATGTCTAGGATATTGGCATC-ATATATGATTTC
1 GTGTAAGACCATGTCTGGGACAGTGGCATCGATATTTGATTTC
* *
95227709 GTGTAAGACCTTGTCTGGGACAGTGGCATCGATATTTGATTAC
1 GTGTAAGACCATGTCTGGGACAGTGGCATCGATATTTGATTTC
* * * *
95227752 ATGTAAGACCACGTTTGGGACATTGGCAT
1 GTGTAAGACCATGTCTGGGACAGTGGCAT
95227781 TATACGAGCT
Statistics
Matches: 94, Mismatches: 16, Indels: 9
0.79 0.13 0.08
Matches are distributed among these distances:
42 27 0.29
43 43 0.46
44 24 0.26
ACGTcount: A:0.25, C:0.16, G:0.26, T:0.34
Consensus pattern (43 bp):
GTGTAAGACCATGTCTGGGACAGTGGCATCGATATTTGATTTC
Found at i:95227847 original size:37 final size:37
Alignment explanation
Indices: 95227797--95227870 Score: 139
Period size: 37 Copynumber: 2.0 Consensus size: 37
95227787 AGCTTATTAG
95227797 TTATCCAAGTATTTTTATTGATTCCGAACGGTTCAGC
1 TTATCCAAGTATTTTTATTGATTCCGAACGGTTCAGC
*
95227834 TTATCCAAGTATTTTTATTGATTCCGAACGTTTCAGC
1 TTATCCAAGTATTTTTATTGATTCCGAACGGTTCAGC
95227871 AGGCATTCAG
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 36 1.00
ACGTcount: A:0.24, C:0.19, G:0.15, T:0.42
Consensus pattern (37 bp):
TTATCCAAGTATTTTTATTGATTCCGAACGGTTCAGC
Found at i:95232575 original size:20 final size:20
Alignment explanation
Indices: 95232552--95232589 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
95232542 TTATACAAAA
*
95232552 ACATGAATCTATATGCAATG
1 ACATGAACCTATATGCAATG
95232572 ACATGAACCTATATGCAA
1 ACATGAACCTATATGCAA
95232590 CACTATTTAG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.42, C:0.18, G:0.13, T:0.26
Consensus pattern (20 bp):
ACATGAACCTATATGCAATG
Found at i:95237611 original size:40 final size:40
Alignment explanation
Indices: 95237560--95237824 Score: 397
Period size: 40 Copynumber: 6.6 Consensus size: 40
95237550 CATTTGAATG
95237560 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
*
95237600 ATATCCAGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
* * *
95237640 ATATCCGGGATAAGACCTGAAGGCATTTGTGCGAACTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
* * *
95237680 ATATCCGGGCTAAGACCCGACGACGTTTGTGCGAATTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
*
95237720 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC-AAGTTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAA-TTGAT
* * *
95237760 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
* *
95237800 ATACCCGGGTTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCA
95237825 ATTGAGCTTG
Statistics
Matches: 202, Mismatches: 21, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
39 2 0.01
40 199 0.99
41 1 0.00
ACGTcount: A:0.28, C:0.22, G:0.28, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
Found at i:95244786 original size:39 final size:40
Alignment explanation
Indices: 95244532--95244794 Score: 316
Period size: 40 Copynumber: 6.6 Consensus size: 40
95244522 TTGAATGCTG
* * * * * *
95244532 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTATTAAA
* * * * *
95244572 TCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTATTAAA
95244612 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
95244652 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
*
95244692 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * * *
95244732 TCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTCACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
95244771 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
95244795 TGAACGAGGA
Statistics
Matches: 200, Mismatches: 20, Indels: 7
0.88 0.09 0.03
Matches are distributed among these distances:
39 34 0.17
40 158 0.79
41 8 0.04
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.27
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
Found at i:95247509 original size:40 final size:40
Alignment explanation
Indices: 95247428--95247647 Score: 250
Period size: 40 Copynumber: 5.5 Consensus size: 40
95247418 ACCCAAGTAT
** * *
95247428 CTTCGGGAT-TTAG-CCGGATATAACCACTCGCAC-AAGGC
1 CTTCGGG-TCTTAGCCCGGATATAGTCACTAGCACAAATGC
* * * *
95247466 CTTCAGGTCTTAGCCTGGATATGGTCACTAGCATAAATGC
1 CTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATGC
* *
95247506 CTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAATGC
1 CTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATGC
*
95247546 CTTCGGGTCTTAGCCCGGATATAG-CAACTCGCACAAATGC
1 CTTCGGGTCTTAGCCCGGATATAGTC-ACTAGCACAAATGC
* * * *
95247586 CTTCGGATCTTAGTCCGGATATAGTCACTAGCATAAAAGC
1 CTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATGC
*
95247626 CTTCGGGACTTAGCCCGGATAT
1 CTTCGGGTCTTAGCCCGGATAT
95247648 CATTCGAATA
Statistics
Matches: 152, Mismatches: 25, Indels: 8
0.82 0.14 0.04
Matches are distributed among these distances:
37 1 0.01
38 10 0.07
39 15 0.10
40 125 0.82
41 1 0.01
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.25
Consensus pattern (40 bp):
CTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATGC
Found at i:95255845 original size:40 final size:40
Alignment explanation
Indices: 95255762--95255981 Score: 232
Period size: 40 Copynumber: 5.5 Consensus size: 40
95255752 ACCCAAGTAT
** * *
95255762 CTTCGGGAT-TTAG-CCGGATATAACCACTCGCAC-AAGGC
1 CTTCGGG-TCTTAGCCCGGATATAGTCACTAGCACAAAAGC
* * * *
95255800 CTTCGGGTTTTAGCCCGGATATGGTCACTAGCATAAATGC
1 CTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAAGC
* *
95255840 CTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAAGC
1 CTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAAGC
* **
95255880 CTTCGGGTCTTAGCCCGGATATAG-CAACTCGCACAACTGC
1 CTTCGGGTCTTAGCCCGGATATAGTC-ACTAGCACAAAAGC
* ** *
95255920 CTTCGGATCTTAGTTCGGATATAGTCACTAGCATAAAAGC
1 CTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAAGC
*
95255960 CTTCGGGACTTAGCCCGGATAT
1 CTTCGGGTCTTAGCCCGGATAT
95255982 CATTCGAATA
Statistics
Matches: 149, Mismatches: 28, Indels: 8
0.81 0.15 0.04
Matches are distributed among these distances:
37 1 0.01
38 11 0.07
39 16 0.11
40 120 0.81
41 1 0.01
ACGTcount: A:0.25, C:0.26, G:0.24, T:0.25
Consensus pattern (40 bp):
CTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAAGC
Found at i:95255893 original size:80 final size:79
Alignment explanation
Indices: 95255762--95255981 Score: 257
Period size: 80 Copynumber: 2.8 Consensus size: 79
95255752 ACCCAAGTAT
* ** * * * *
95255762 CTTCGGGATTTAGCCGGATATAACCACTCGCAC-AAGGCCTTCGGGTTTTAGCCCGGATATGGTC
1 CTTCGGGACTTAGCCGGATATAGTCACTAGCACAAAAGCCTTCGGGTCTTAGCCCGGATATAG-C
*
95255826 -ACTAGCATAAATGC
65 AACTAGCACAAATGC
*
95255840 CTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAAGCCTTCGGGTCTTAGCCCGGATATAGC
1 CTTCGGGACTTAG-CCGGATATAGTCACTAGCACAAAAGCCTTCGGGTCTTAGCCCGGATATAGC
* *
95255905 AACTCGCACAACTGC
65 AACTAGCACAAATGC
* * *
95255920 CTTC-GGATCTTAGTTCGGATATAGTCACTAGCATAAAAGCCTTCGGGACTTAGCCCGGATAT
1 CTTCGGGA-CTTAG-CCGGATATAGTCACTAGCACAAAAGCCTTCGGGTCTTAGCCCGGATAT
95255982 CATTCGAATA
Statistics
Matches: 122, Mismatches: 16, Indels: 6
0.85 0.11 0.04
Matches are distributed among these distances:
78 12 0.10
79 20 0.16
80 90 0.74
ACGTcount: A:0.25, C:0.26, G:0.24, T:0.25
Consensus pattern (79 bp):
CTTCGGGACTTAGCCGGATATAGTCACTAGCACAAAAGCCTTCGGGTCTTAGCCCGGATATAGCA
ACTAGCACAAATGC
Found at i:95262499 original size:23 final size:23
Alignment explanation
Indices: 95262473--95262518 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
95262463 TTGAGGGCTC
95262473 TTAGGAATTATAAAGCCCATTTA
1 TTAGGAATTATAAAGCCCATTTA
95262496 TTAGGAATTATAAAGCCCATTTA
1 TTAGGAATTATAAAGCCCATTTA
95262519 AACACCTAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.39, C:0.13, G:0.13, T:0.35
Consensus pattern (23 bp):
TTAGGAATTATAAAGCCCATTTA
Found at i:95275697 original size:43 final size:43
Alignment explanation
Indices: 95275629--95275714 Score: 136
Period size: 43 Copynumber: 2.0 Consensus size: 43
95275619 GTTCCCTACG
* * *
95275629 CTGGCTGCCGAAGTAGTCTGGGATTTAGGACCCACATTTTGCT
1 CTGGCTGCAGAAGTAGTCTGAGATTTAGGACCCACATTCTGCT
*
95275672 CTGGCTGCAGAAGTATTCTGAGATTTAGGACCCACATTCTGCT
1 CTGGCTGCAGAAGTAGTCTGAGATTTAGGACCCACATTCTGCT
95275715 TCTTAAAATT
Statistics
Matches: 39, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
43 39 1.00
ACGTcount: A:0.21, C:0.23, G:0.26, T:0.30
Consensus pattern (43 bp):
CTGGCTGCAGAAGTAGTCTGAGATTTAGGACCCACATTCTGCT
Found at i:95278065 original size:29 final size:29
Alignment explanation
Indices: 95278002--95278069 Score: 93
Period size: 29 Copynumber: 2.3 Consensus size: 29
95277992 TAATCAACCG
95278002 CGCACACTTAGTGCCATGCACTTTAAACT
1 CGCACACTTAGTGCCATGCACTTTAAACT
* **
95278031 CACACACTTAGTGCCATGCA-TTTCAAGTT
1 CGCACACTTAGTGCCATGCACTTT-AAACT
95278060 CGCACACTTA
1 CGCACACTTA
95278070 CCTTTTCCGC
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
28 3 0.09
29 31 0.91
ACGTcount: A:0.28, C:0.31, G:0.13, T:0.28
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCACTTTAAACT
Found at i:95278182 original size:174 final size:174
Alignment explanation
Indices: 95277891--95278218 Score: 611
Period size: 174 Copynumber: 1.9 Consensus size: 174
95277881 AACTCAAGGT
*
95277891 ACTTACCTTTTCCGCTGTCCAAAATTGACTCGGTAAAGTCGCACCCTTCATGTAAATAATTTATA
1 ACTTACCTTTTCCGCTGTCCAAAATTGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
*
95277956 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGC
66 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCACGCACACTTAGTGCCATGC
95278021 ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
131 ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
*
95278065 ACTTACCTTTTCCGCTGTCCAAAATTGACTCGGTAAGGTCGCACCCTTAATGTAAATAATTTATA
1 ACTTACCTTTTCCGCTGTCCAAAATTGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
*
95278130 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCACGCACACTTAGTGCCATGT
66 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCACGCACACTTAGTGCCATGC
*
95278195 ACTTTAAACTCGCACACTTAGTGC
131 ACTTTAAACTCACACACTTAGTGC
95278219 TGTACAATTT
Statistics
Matches: 149, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
174 149 1.00
ACGTcount: A:0.31, C:0.24, G:0.15, T:0.30
Consensus pattern (174 bp):
ACTTACCTTTTCCGCTGTCCAAAATTGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCACGCACACTTAGTGCCATGC
ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
Found at i:95278210 original size:29 final size:30
Alignment explanation
Indices: 95278171--95278249 Score: 110
Period size: 29 Copynumber: 2.7 Consensus size: 30
95278161 CTTAATAATC
95278171 AACCACGCACACTTAGTGCCATGTAC-TTTA
1 AACC-CGCACACTTAGTGCCATGTACATTTA
*
95278201 AACTCGCACACTTAGTG-C-TGTACAATTTA
1 AACCCGCACACTTAGTGCCATGTAC-ATTTA
95278230 AACCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
95278250 ATCTCATGAC
Statistics
Matches: 43, Mismatches: 2, Indels: 7
0.83 0.04 0.13
Matches are distributed among these distances:
27 5 0.12
28 1 0.02
29 33 0.77
30 4 0.09
ACGTcount: A:0.30, C:0.30, G:0.14, T:0.25
Consensus pattern (30 bp):
AACCCGCACACTTAGTGCCATGTACATTTA
Found at i:95286464 original size:25 final size:25
Alignment explanation
Indices: 95286430--95286480 Score: 93
Period size: 25 Copynumber: 2.0 Consensus size: 25
95286420 CCGATTGCTT
95286430 CACTCCTTCCTTCCTCCTCTCAATC
1 CACTCCTTCCTTCCTCCTCTCAATC
*
95286455 CACTCTTTCCTTCCTCCTCTCAATC
1 CACTCCTTCCTTCCTCCTCTCAATC
95286480 C
1 C
95286481 GGCCAAGAAG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.12, C:0.51, G:0.00, T:0.37
Consensus pattern (25 bp):
CACTCCTTCCTTCCTCCTCTCAATC
Found at i:95289802 original size:41 final size:41
Alignment explanation
Indices: 95289757--95289853 Score: 140
Period size: 41 Copynumber: 2.4 Consensus size: 41
95289747 ATGGGTCTAT
* *
95289757 TCACACAAGCTAACAGTCCGAACATAGCTACATGGTGTCGC
1 TCACACAAGCTAACAGTCCGAACATAGCTACATGGTGCCAC
* * *
95289798 TCACACAAGCTAACTGTCCGAACGTAGCTACATGGTGCCAT
1 TCACACAAGCTAACAGTCCGAACATAGCTACATGGTGCCAC
*
95289839 TCACACAAGTTAACA
1 TCACACAAGCTAACA
95289854 AGTATCCGCA
Statistics
Matches: 49, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
41 49 1.00
ACGTcount: A:0.33, C:0.29, G:0.18, T:0.21
Consensus pattern (41 bp):
TCACACAAGCTAACAGTCCGAACATAGCTACATGGTGCCAC
Found at i:95293132 original size:40 final size:40
Alignment explanation
Indices: 95293065--95293321 Score: 324
Period size: 40 Copynumber: 6.5 Consensus size: 40
95293055 ACCCAAGTAT
*
95293065 CTTCGGGAT-TTAG-CCGGATATAACAACTCGCACAAATGC
1 CTTCGGG-TCTTAGCCCGGATATAGCAACTCGCACAAATGC
* *
95293104 CCTCGGGTCTTAGCCCAGATATAGCAACTCGCACAAATGC
1 CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
* * *
95293144 CTTCGGGTCTTAGCCCGGATATAATC-ACTAGCATAAATGC
1 CTTCGGGTCTTAGCCCGGATAT-AGCAACTCGCACAAATGC
* *
95293184 CTTCGGGACATAGCCCGGATATAGCAACTCGCACAAATGC
1 CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
* * *
95293224 CTTCGGGTCTTAGCCCGGATATAATC-ACTAGCATAAATGC
1 CTTCGGGTCTTAGCCCGGATAT-AGCAACTCGCACAAATGC
* *
95293264 CTTCGGGACATAGCCCGGATATAGCAACTCGCACAAATGC
1 CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
* *
95293304 CTTCGGATCTTAGTCCGG
1 CTTCGGGTCTTAGCCCGG
95293322 TTATCATCCG
Statistics
Matches: 185, Mismatches: 27, Indels: 11
0.83 0.12 0.05
Matches are distributed among these distances:
38 1 0.01
39 14 0.08
40 166 0.90
41 4 0.02
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.23
Consensus pattern (40 bp):
CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
Found at i:95293198 original size:80 final size:80
Alignment explanation
Indices: 95293065--95293321 Score: 403
Period size: 80 Copynumber: 3.2 Consensus size: 80
95293055 ACCCAAGTAT
* * * * * *
95293065 CTTCGGGAT-TTAG-CCGGATATAA-CAACTCGCACAAATGCCCTCGGGTCTTAGCCCAGATATA
1 CTTCGGG-TCTTAGCCCGGATATAATC-ACTAGCATAAATGCCTTCGGGACATAGCCCGGATATA
95293127 GCAACTCGCACAAATGC
64 GCAACTCGCACAAATGC
95293144 CTTCGGGTCTTAGCCCGGATATAATCACTAGCATAAATGCCTTCGGGACATAGCCCGGATATAGC
1 CTTCGGGTCTTAGCCCGGATATAATCACTAGCATAAATGCCTTCGGGACATAGCCCGGATATAGC
95293209 AACTCGCACAAATGC
66 AACTCGCACAAATGC
95293224 CTTCGGGTCTTAGCCCGGATATAATCACTAGCATAAATGCCTTCGGGACATAGCCCGGATATAGC
1 CTTCGGGTCTTAGCCCGGATATAATCACTAGCATAAATGCCTTCGGGACATAGCCCGGATATAGC
95293289 AACTCGCACAAATGC
66 AACTCGCACAAATGC
* *
95293304 CTTCGGATCTTAGTCCGG
1 CTTCGGGTCTTAGCCCGG
95293322 TTATCATCCG
Statistics
Matches: 167, Mismatches: 8, Indels: 5
0.93 0.04 0.03
Matches are distributed among these distances:
78 1 0.01
79 11 0.07
80 154 0.92
81 1 0.01
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.23
Consensus pattern (80 bp):
CTTCGGGTCTTAGCCCGGATATAATCACTAGCATAAATGCCTTCGGGACATAGCCCGGATATAGC
AACTCGCACAAATGC
Found at i:95296696 original size:39 final size:39
Alignment explanation
Indices: 95296645--95296722 Score: 156
Period size: 39 Copynumber: 2.0 Consensus size: 39
95296635 ATGTGTCACT
95296645 ATAAATCACAAATTCTTTACTCGATTCTAGCTAAACTAA
1 ATAAATCACAAATTCTTTACTCGATTCTAGCTAAACTAA
95296684 ATAAATCACAAATTCTTTACTCGATTCTAGCTAAACTAA
1 ATAAATCACAAATTCTTTACTCGATTCTAGCTAAACTAA
95296723 CATTGGTGCC
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 39 1.00
ACGTcount: A:0.41, C:0.21, G:0.05, T:0.33
Consensus pattern (39 bp):
ATAAATCACAAATTCTTTACTCGATTCTAGCTAAACTAA
Found at i:95301626 original size:7 final size:7
Alignment explanation
Indices: 95301616--95301648 Score: 50
Period size: 7 Copynumber: 4.7 Consensus size: 7
95301606 TTAAATCTGC
95301616 TAAAAAA
1 TAAAAAA
95301623 T-AAAAA
1 TAAAAAA
95301629 TAAATAAA
1 TAAA-AAA
95301637 TAAAAAA
1 TAAAAAA
95301644 TAAAA
1 TAAAA
95301649 GGTAGTTTGA
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
6 6 0.25
7 11 0.46
8 7 0.29
ACGTcount: A:0.82, C:0.00, G:0.00, T:0.18
Consensus pattern (7 bp):
TAAAAAA
Found at i:95306148 original size:21 final size:21
Alignment explanation
Indices: 95306111--95306150 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
95306101 TCTTAAGTCT
*
95306111 TGATGATGAATCTGGCTTCTA
1 TGATGATCAATCTGGCTTCTA
95306132 TGATGGATCAATC-GGCTTC
1 TGAT-GATCAATCTGGCTTC
95306151 CTTAGGGTAA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
21 10 0.59
22 7 0.41
ACGTcount: A:0.23, C:0.17, G:0.25, T:0.35
Consensus pattern (21 bp):
TGATGATCAATCTGGCTTCTA
Found at i:95311664 original size:40 final size:40
Alignment explanation
Indices: 95311601--95311804 Score: 213
Period size: 40 Copynumber: 5.1 Consensus size: 40
95311591 CGGAATTTAA
** *
95311601 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
95311641 CCGG-TCATGGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGAT-ATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
95311681 CCGGATTTAGTAACTCGCACCAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
95311720 CCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
95311760 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
95311800 CCGGA
1 CCGGA
95311805 CATCATTCGA
Statistics
Matches: 137, Mismatches: 18, Indels: 18
0.79 0.10 0.10
Matches are distributed among these distances:
38 2 0.01
39 33 0.24
40 89 0.65
41 13 0.09
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:95311737 original size:79 final size:79
Alignment explanation
Indices: 95311622--95311804 Score: 210
Period size: 79 Copynumber: 2.3 Consensus size: 79
95311612 TACTCGTTCA
* * *
95311622 AATGCCTTCGGGACATAGCCCGGTCATGGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGGA
1 AATGCCTTCGGGACTTAGCCCGG-AATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCCGGA
* *
95311686 TTTAGTAAC-TCGCACC
64 TATAGTAACTTAGCA-C
* **
95311702 AATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCGGAT
1 AATGCCTTCGGGACTTAGCCCGGAA-TAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGAT
* *
95311766 ATGGTCACTTAGCAC
65 ATAGTAACTTAGCAC
*
95311781 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
95311805 CATCATTCGA
Statistics
Matches: 88, Mismatches: 11, Indels: 8
0.82 0.10 0.07
Matches are distributed among these distances:
78 4 0.05
79 57 0.65
80 27 0.31
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.24
Consensus pattern (79 bp):
AATGCCTTCGGGACTTAGCCCGGAATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGATA
TAGTAACTTAGCAC
Found at i:95322130 original size:21 final size:20
Alignment explanation
Indices: 95322092--95322135 Score: 52
Period size: 20 Copynumber: 2.1 Consensus size: 20
95322082 CCAGGATCAA
* *
95322092 TTTAAAACAAAACAGAAAGT
1 TTTAAAAAAAAACAGAAAAT
*
95322112 TTTAAAAAAAAACTTGAAAAT
1 TTTAAAAAAAAAC-AGAAAAT
95322133 TTT
1 TTT
95322136 GTAAATAGGG
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
20 12 0.60
21 8 0.40
ACGTcount: A:0.57, C:0.07, G:0.07, T:0.30
Consensus pattern (20 bp):
TTTAAAAAAAAACAGAAAAT
Found at i:95329827 original size:40 final size:40
Alignment explanation
Indices: 95329729--95330031 Score: 405
Period size: 40 Copynumber: 7.6 Consensus size: 40
95329719 TCCTCGTTCA
* * * * *
95329729 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* *
95329768 AATGCCTTCGGGACATAACCCGGATTTAATAACTCACACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
95329808 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
95329848 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
95329888 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * *
95329928 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * * * * *
95329968 AAGGCCTTC-GGATCTTAATCCGGATATATTCACTTAGCAC-
1 AATGCCTTCGGGA-CTTAACCCGGATTTAATAAC-TCGCACG
* *
95330008 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
95330032 CAGCATTCAA
Statistics
Matches: 242, Mismatches: 18, Indels: 7
0.91 0.07 0.03
Matches are distributed among these distances:
39 39 0.16
40 195 0.81
41 8 0.03
ACGTcount: A:0.27, C:0.27, G:0.20, T:0.25
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:95337899 original size:40 final size:40
Alignment explanation
Indices: 95337717--95337939 Score: 236
Period size: 40 Copynumber: 5.6 Consensus size: 40
95337707 TCCTCGTTCA
* * * * *
95337717 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* *
95337756 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
95337796 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * *
95337836 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* ** * * * *
95337876 AAGGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCAC-
1 AATGCCTTCGGGA-CTTAACCCGGATTTAATAAC-TCGCACG
* *
95337916 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
95337940 CAGCATTCAA
Statistics
Matches: 160, Mismatches: 20, Indels: 7
0.86 0.11 0.04
Matches are distributed among these distances:
39 37 0.23
40 115 0.72
41 8 0.05
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:95337948 original size:41 final size:41
Alignment explanation
Indices: 95337871--95337948 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
95337861 TTAGTATCTC
* * *
95337871 GCACAAAGGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAAGGCCTTCGGATCTTAGCCCGGACACATTCACTTA
95337912 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAAGGCCTTC-GGATCTTAGCCCGGACA-CATTCA
95337949 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.23
Consensus pattern (41 bp):
GCACAAAGGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Done.