Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr3
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 100348136
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 3062571 characters in sequence are not A, C, G, or T
File 280 of 290
Found at i:96725129 original size:30 final size:30
Alignment explanation
Indices: 96725095--96725229 Score: 121
Period size: 30 Copynumber: 4.5 Consensus size: 30
96725085 TGAAAAGGGA
*
96725095 TATCAAATTATGAAAAAGGATAGCTTCAGC
1 TATCAAATTATGAAAAGGGATAGCTTCAGC
* *
96725125 TATCAAATTATGAAAAGGGAT-G-GTGACGAC
1 TATCAAATTATGAAAAGGGATAGCTTCA-G-C
* * ** *
96725155 CATGAAGCTATGAAAAGGGATAGCTTCGGC
1 TATCAAATTATGAAAAGGGATAGCTTCAGC
* * *
96725185 TATCAAATTATGAAAAGGGAGAGCTTCGGG
1 TATCAAATTATGAAAAGGGATAGCTTCAGC
* *
96725215 AATCGAATTATGAAA
1 TATCAAATTATGAAA
96725230 TAACTTCGTG
Statistics
Matches: 83, Mismatches: 18, Indels: 8
0.76 0.17 0.07
Matches are distributed among these distances:
28 2 0.02
29 2 0.02
30 76 0.92
31 2 0.02
32 1 0.01
ACGTcount: A:0.40, C:0.12, G:0.24, T:0.24
Consensus pattern (30 bp):
TATCAAATTATGAAAAGGGATAGCTTCAGC
Found at i:96725227 original size:60 final size:60
Alignment explanation
Indices: 96725091--96725229 Score: 149
Period size: 60 Copynumber: 2.3 Consensus size: 60
96725081 ACAATGAAAA
*
96725091 GGGATATCAAATTATGAAAAAGGATAGCTTCAGCTATCAAATTATGAAAAGGGATGGTGAC
1 GGGA-ATCGAATTATGAAAAAGGATAGCTTCAGCTATCAAATTATGAAAAGGGATGGTGAC
*** * * * *
96725152 GACCAT-GAAGCTATGAAAAGGGATAGCTTCGGCTATCAAATTATGAAAAGGGA-GAGCT-TC
1 GGGAATCGAA-TTATGAAAAAGGATAGCTTCAGCTATCAAATTATGAAAAGGGATG-G-TGAC
96725212 GGGAATCGAATTATGAAA
1 GGGAATCGAATTATGAAA
96725230 TAACTTCGTG
Statistics
Matches: 62, Mismatches: 12, Indels: 9
0.75 0.14 0.11
Matches are distributed among these distances:
59 3 0.05
60 54 0.87
61 5 0.08
ACGTcount: A:0.40, C:0.12, G:0.26, T:0.23
Consensus pattern (60 bp):
GGGAATCGAATTATGAAAAAGGATAGCTTCAGCTATCAAATTATGAAAAGGGATGGTGAC
Found at i:96727450 original size:33 final size:33
Alignment explanation
Indices: 96727408--96727475 Score: 136
Period size: 33 Copynumber: 2.1 Consensus size: 33
96727398 TCAATTTAAA
96727408 TGTGACACCCCTAATGTGACCCTAGTCGGAAAG
1 TGTGACACCCCTAATGTGACCCTAGTCGGAAAG
96727441 TGTGACACCCCTAATGTGACCCTAGTCGGAAAG
1 TGTGACACCCCTAATGTGACCCTAGTCGGAAAG
96727474 TG
1 TG
96727476 GTTTCGGGAC
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 35 1.00
ACGTcount: A:0.26, C:0.26, G:0.25, T:0.22
Consensus pattern (33 bp):
TGTGACACCCCTAATGTGACCCTAGTCGGAAAG
Found at i:96730106 original size:47 final size:47
Alignment explanation
Indices: 96730049--96730305 Score: 365
Period size: 47 Copynumber: 5.4 Consensus size: 47
96730039 ATTGATGTAC
* * *
96730049 AAGTATATATATGTGATAGGGCCGAGTGGCCAATGTGATGAATGTGA
1 AAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
*
96730096 AAGTATATATATGCGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
1 AAGTGTATATAT--GTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
* *
96730145 ACA-TGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
1 A-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
* *
96730192 ACA-TGCATATATGAGATAAGGCCGAATGGCCAATGTGATGAATGTGA
1 A-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
* *
96730239 AAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGGATGTGG
1 AAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
*
96730286 AAGTGTATAAATGTGATAAG
1 AAGTGTATATATGTGATAAG
96730306 TCCCGAAGGG
Statistics
Matches: 192, Mismatches: 14, Indels: 8
0.90 0.07 0.04
Matches are distributed among these distances:
46 1 0.01
47 150 0.78
49 40 0.21
50 1 0.01
ACGTcount: A:0.33, C:0.09, G:0.30, T:0.27
Consensus pattern (47 bp):
AAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
Found at i:96730183 original size:22 final size:22
Alignment explanation
Indices: 96730156--96730277 Score: 61
Period size: 22 Copynumber: 5.3 Consensus size: 22
96730146 CATGTGTATG
96730156 TGTGATAAGGCCGAATGGCCAA
1 TGTGATAAGGCCGAATGGCCAA
* * *
96730178 TGTGATGAATG-TGAACAT-GCATATA
1 TGTGAT-AAGGCCG-A-ATGGC-CA-A
*
96730203 TGAGATAAGGCCGAATGGCCAA
1 TGTGATAAGGCCGAATGGCCAA
* * ***
96730225 TGTGATGAATG-TGAAAGTGTATATA
1 TGTGAT-AAGGCCG-AA-TGGCCA-A
96730250 TGTGATAAGGCCGAATGGCCAA
1 TGTGATAAGGCCGAATGGCCAA
96730272 TGTGAT
1 TGTGAT
96730278 GGATGTGGAA
Statistics
Matches: 70, Mismatches: 18, Indels: 24
0.62 0.16 0.21
Matches are distributed among these distances:
22 21 0.30
23 17 0.24
24 17 0.24
25 15 0.21
ACGTcount: A:0.34, C:0.11, G:0.30, T:0.25
Consensus pattern (22 bp):
TGTGATAAGGCCGAATGGCCAA
Found at i:96733700 original size:49 final size:49
Alignment explanation
Indices: 96733630--96733858 Score: 431
Period size: 49 Copynumber: 4.7 Consensus size: 49
96733620 GTGAACATGC
*
96733630 ATATATGAGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
96733679 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
96733728 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
96733777 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
* *
96733826 ATATATGTGATAAGGCCGAATGGCCAATGTGAT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGAT
96733859 ATATTGTGGC
Statistics
Matches: 177, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
49 177 1.00
ACGTcount: A:0.33, C:0.09, G:0.28, T:0.30
Consensus pattern (49 bp):
ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
Found at i:96734048 original size:37 final size:37
Alignment explanation
Indices: 96733993--96734095 Score: 161
Period size: 37 Copynumber: 2.8 Consensus size: 37
96733983 GGAAATATAT
96733993 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* * *
96734030 TCCGGGTAAGACCTGATGACTATGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* *
96734067 TCTGGGTAAGACCCGATAACTACGTGTGG
1 TCCGGGTAAGACCCGATGACTACGTGTGG
96734096 GGACTATTCG
Statistics
Matches: 59, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
37 59 1.00
ACGTcount: A:0.23, C:0.17, G:0.32, T:0.27
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:96736135 original size:3 final size:3
Alignment explanation
Indices: 96736129--96736173 Score: 56
Period size: 3 Copynumber: 15.3 Consensus size: 3
96736119 TGTTGTTGAA
* * *
96736129 TAT TAT TAT TAT CAT TAT TAT TAC TAC TAT TAT TAT T-T TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
96736174 TACTTAATTT
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
2 2 0.05
3 35 0.95
ACGTcount: A:0.31, C:0.07, G:0.00, T:0.62
Consensus pattern (3 bp):
TAT
Found at i:96739399 original size:40 final size:39
Alignment explanation
Indices: 96739344--96739424 Score: 144
Period size: 40 Copynumber: 2.1 Consensus size: 39
96739334 AAGTTCAATA
*
96739344 TGTTATATCCGGGCTAAGTCCTGAAGAGCATTCGTGCTGG
1 TGTTATATCCGGGCTAAGTCCCGAAGAGCATTC-TGCTGG
96739384 TGTTATATCCGGGCTAAGTCCCGAAGAGCATTCTGCTGG
1 TGTTATATCCGGGCTAAGTCCCGAAGAGCATTCTGCTGG
96739423 TG
1 TG
96739425 ATGTGTATTC
Statistics
Matches: 40, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
39 8 0.20
40 32 0.80
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.30
Consensus pattern (39 bp):
TGTTATATCCGGGCTAAGTCCCGAAGAGCATTCTGCTGG
Found at i:96739624 original size:25 final size:25
Alignment explanation
Indices: 96739585--96739639 Score: 76
Period size: 25 Copynumber: 2.2 Consensus size: 25
96739575 TGTGTAATAA
96739585 CGAATGAATATAGGCACTATGTGTG
1 CGAATGAATATAGGCACTATGTGTG
*
96739610 CGAATGAAT-TGAGGCACTGTGTGTG
1 CGAATGAATAT-AGGCACTATGTGTG
*
96739635 TGAAT
1 CGAAT
96739640 TCTTTAACCG
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
24 1 0.04
25 26 0.96
ACGTcount: A:0.29, C:0.11, G:0.31, T:0.29
Consensus pattern (25 bp):
CGAATGAATATAGGCACTATGTGTG
Found at i:96739660 original size:28 final size:28
Alignment explanation
Indices: 96739623--96739721 Score: 101
Period size: 28 Copynumber: 3.5 Consensus size: 28
96739613 ATGAATTGAG
* *
96739623 GCACTGTGTGTGTGAATTCTTTAACCGA
1 GCACTATGTGTGCGAATTCTTTAACCGA
** * ** *
96739651 GCACTATGTGTGCGAGA-TCGGTCAGTGG
1 GCACTATGTGTGCGA-ATTCTTTAACCGA
*
96739679 GCACTGTGTGTGCGAATTCTTTAACCGA
1 GCACTATGTGTGCGAATTCTTTAACCGA
96739707 GCACTATGTGTGCGA
1 GCACTATGTGTGCGA
96739722 GATCGGTCAG
Statistics
Matches: 53, Mismatches: 16, Indels: 4
0.73 0.22 0.05
Matches are distributed among these distances:
27 1 0.02
28 51 0.96
29 1 0.02
ACGTcount: A:0.20, C:0.19, G:0.30, T:0.30
Consensus pattern (28 bp):
GCACTATGTGTGCGAATTCTTTAACCGA
Found at i:96739687 original size:56 final size:56
Alignment explanation
Indices: 96739622--96739748 Score: 245
Period size: 56 Copynumber: 2.3 Consensus size: 56
96739612 AATGAATTGA
*
96739622 GGCACTGTGTGTGTGAATTCTTTAACCGAGCACTATGTGTGCGAGATCGGTCAGTG
1 GGCACTGTGTGTGCGAATTCTTTAACCGAGCACTATGTGTGCGAGATCGGTCAGTG
96739678 GGCACTGTGTGTGCGAATTCTTTAACCGAGCACTATGTGTGCGAGATCGGTCAGTG
1 GGCACTGTGTGTGCGAATTCTTTAACCGAGCACTATGTGTGCGAGATCGGTCAGTG
96739734 GGCACTGTGTGTGCG
1 GGCACTGTGTGTGCG
96739749 GATTTCGTTT
Statistics
Matches: 70, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
56 70 1.00
ACGTcount: A:0.18, C:0.19, G:0.34, T:0.29
Consensus pattern (56 bp):
GGCACTGTGTGTGCGAATTCTTTAACCGAGCACTATGTGTGCGAGATCGGTCAGTG
Found at i:96739738 original size:28 final size:28
Alignment explanation
Indices: 96739651--96739748 Score: 108
Period size: 28 Copynumber: 3.5 Consensus size: 28
96739641 CTTTAACCGA
96739651 GCACTATGTGTGCGAGATCGGTCAGTGG
1 GCACTATGTGTGCGAGATCGGTCAGTGG
* ** * ** *
96739679 GCACTGTGTGTGCGA-ATTCTTTAACCGA
1 GCACTATGTGTGCGAGA-TCGGTCAGTGG
96739707 GCACTATGTGTGCGAGATCGGTCAGTGG
1 GCACTATGTGTGCGAGATCGGTCAGTGG
*
96739735 GCACTGTGTGTGCG
1 GCACTATGTGTGCG
96739749 GATTTCGTTT
Statistics
Matches: 53, Mismatches: 15, Indels: 4
0.74 0.21 0.06
Matches are distributed among these distances:
27 1 0.02
28 51 0.96
29 1 0.02
ACGTcount: A:0.17, C:0.19, G:0.36, T:0.28
Consensus pattern (28 bp):
GCACTATGTGTGCGAGATCGGTCAGTGG
Found at i:96746907 original size:27 final size:26
Alignment explanation
Indices: 96746869--96746955 Score: 93
Period size: 27 Copynumber: 3.3 Consensus size: 26
96746859 TGGAGGAAGC
96746869 GTTCTGGTGGCTATGCCACAAATATCT
1 GTTCTGGTGGCTATGCCAC-AATATCT
*
96746896 GTTCTGGTGGCTCTGCCACAATATCT
1 GTTCTGGTGGCTATGCCACAATATCT
* * * ** *
96746922 ATATCTGGTGACTCTATCACAATATTT
1 GT-TCTGGTGGCTATGCCACAATATCT
96746949 GTTCTGG
1 GTTCTGG
96746956 CAGCCATGCT
Statistics
Matches: 52, Mismatches: 7, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
26 13 0.25
27 39 0.75
ACGTcount: A:0.21, C:0.22, G:0.21, T:0.37
Consensus pattern (26 bp):
GTTCTGGTGGCTATGCCACAATATCT
Found at i:96748553 original size:27 final size:27
Alignment explanation
Indices: 96748523--96748655 Score: 142
Period size: 27 Copynumber: 4.9 Consensus size: 27
96748513 TAATTTGATC
96748523 AAATGACTATTTTGCCCTTATGTGGTA
1 AAATGACTATTTTGCCCTTATGTGGTA
* *
96748550 AAATGACTATATTGCCCTTATGAGGTA
1 AAATGACTATTTTGCCCTTATGTGGTA
* *
96748577 AAATGACTATTTTGCCCTTTTTATGGTA
1 AAATGACTATTTTGCCC-TTATGTGGTA
*** * **
96748605 AAATGACTAAAATGCCCCTACATGGTA
1 AAATGACTATTTTGCCCTTATGTGGTA
*
96748632 AATTGACTATTTTG-CCTCTATGTG
1 AAATGACTATTTTGCCCT-TATGTG
96748656 AGGTATTTAT
Statistics
Matches: 85, Mismatches: 19, Indels: 4
0.79 0.18 0.04
Matches are distributed among these distances:
26 2 0.02
27 62 0.73
28 21 0.25
ACGTcount: A:0.29, C:0.17, G:0.17, T:0.38
Consensus pattern (27 bp):
AAATGACTATTTTGCCCTTATGTGGTA
Found at i:96748621 original size:55 final size:54
Alignment explanation
Indices: 96748523--96748647 Score: 162
Period size: 55 Copynumber: 2.3 Consensus size: 54
96748513 TAATTTGATC
* * * * *
96748523 AAATGACTATTTTGCCCTTATGTGGTAAAATGACTATATTGCCCTTATGA-GGTA
1 AAATGACTATTTTGCCCTTATATGGTAAAATGACTAAAATGCCCCTA-CATGGTA
*
96748577 AAATGACTATTTTGCCCTTTTTATGGTAAAATGACTAAAATGCCCCTACATGGTA
1 AAATGACTATTTTGCCC-TTATATGGTAAAATGACTAAAATGCCCCTACATGGTA
*
96748632 AATTGACTATTTTGCC
1 AAATGACTATTTTGCC
96748648 TCTATGTGAG
Statistics
Matches: 62, Mismatches: 7, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
54 18 0.29
55 44 0.71
ACGTcount: A:0.30, C:0.17, G:0.16, T:0.37
Consensus pattern (54 bp):
AAATGACTATTTTGCCCTTATATGGTAAAATGACTAAAATGCCCCTACATGGTA
Found at i:96749022 original size:18 final size:18
Alignment explanation
Indices: 96748999--96749039 Score: 55
Period size: 18 Copynumber: 2.3 Consensus size: 18
96748989 ATTTAAATTG
96748999 TTACTGCACTGATTACTA
1 TTACTGCACTGATTACTA
* * *
96749017 TTACTGCTCTGTTTACTG
1 TTACTGCACTGATTACTA
96749035 TTACT
1 TTACT
96749040 TCAATGGGCC
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.20, C:0.22, G:0.12, T:0.46
Consensus pattern (18 bp):
TTACTGCACTGATTACTA
Found at i:96749141 original size:40 final size:39
Alignment explanation
Indices: 96749029--96749146 Score: 114
Period size: 40 Copynumber: 3.0 Consensus size: 39
96749019 ACTGCTCTGT
* * **
96749029 TTACTGTTACTTCAATGGGCCAAGGCCCAAACACATGATTG
1 TTACTGTTAC-TGAATGGGCTAAGGCCCAAACTGAT-ATTG
* * *
96749070 TTTCTG-TATTGAGATGGGCTAAAGCCCAAACTGATATTG
1 TTACTGTTACTGA-ATGGGCTAAGGCCCAAACTGATATTG
*
96749109 TTACTGTTACTGATATGGGCTTAGGCCCAAACTG-TATT
1 TTACTGTTACTGA-ATGGGCTAAGGCCCAAACTGATATT
96749147 TGCTCACTAT
Statistics
Matches: 63, Mismatches: 12, Indels: 6
0.78 0.15 0.07
Matches are distributed among these distances:
39 15 0.24
40 43 0.68
41 5 0.08
ACGTcount: A:0.27, C:0.19, G:0.21, T:0.32
Consensus pattern (39 bp):
TTACTGTTACTGAATGGGCTAAGGCCCAAACTGATATTG
Found at i:96751787 original size:27 final size:27
Alignment explanation
Indices: 96751756--96751933 Score: 196
Period size: 27 Copynumber: 6.6 Consensus size: 27
96751746 TAAATTGTAC
96751756 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* *** *
96751783 TGCACTAAGTGTGCGAAACGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
96751809 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
96751837 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
96751865 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
96751892 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
96751919 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
96751934 GACTCAATAT
Statistics
Matches: 127, Mismatches: 21, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
27 104 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.16, G:0.28, T:0.29
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:96751897 original size:82 final size:81
Alignment explanation
Indices: 96751757--96751912 Score: 224
Period size: 82 Copynumber: 1.9 Consensus size: 81
96751747 AAATTGTACA
* *
96751757 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAACGAATATGATGCACTAAGTGT
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAACGAATACGATGCACTAAGTGT
96751822 GCGAATTGACCATGCG
66 GCGAATTGACCATGCG
*** *
96751838 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACTAAGT
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAACGAATACGAT-GCACTAAGT
*
96751902 GTGCGAGTTGA
64 GTGCGAATTGA
96751913 TTATATAGCA
Statistics
Matches: 66, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
81 16 0.24
82 50 0.76
ACGTcount: A:0.27, C:0.16, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAACGAATACGATGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:96751924 original size:82 final size:81
Alignment explanation
Indices: 96751753--96751933 Score: 220
Period size: 82 Copynumber: 2.2 Consensus size: 81
96751743 GATTAAATTG
* *
96751753 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAACGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAACGAATACGATGCACTAA
96751818 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * *** *
96751834 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAACGAATACGAT-GCACT
* **
96751898 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
96751916 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
96751934 GACTCAATAT
Statistics
Matches: 83, Mismatches: 15, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
81 18 0.22
82 65 0.78
ACGTcount: A:0.27, C:0.16, G:0.28, T:0.29
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAACGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:96754956 original size:42 final size:43
Alignment explanation
Indices: 96754852--96754959 Score: 132
Period size: 44 Copynumber: 2.5 Consensus size: 43
96754842 ATATGTGTTA
* *
96754852 TCGTGTAAGACCATGTCTGGGATGTTGGCATCAACTTATGATT
1 TCGTGTAAGACCCTGTATGGGATGTTGGCATCAACTTATGATT
**
96754895 TACGTGTAAGACCAC-GTATGGGATGTTGGCATTGTAC-T-TGATT
1 T-CGTGTAAGACC-CTGTATGGGATGTTGGCA-TCAACTTATGATT
96754938 TCGTGTAAGACCCTGTATGGGA
1 TCGTGTAAGACCCTGTATGGGA
96754960 CAATGGCATC
Statistics
Matches: 57, Mismatches: 4, Indels: 9
0.81 0.06 0.13
Matches are distributed among these distances:
41 1 0.02
42 19 0.33
43 7 0.12
44 27 0.47
45 3 0.05
ACGTcount: A:0.23, C:0.16, G:0.28, T:0.33
Consensus pattern (43 bp):
TCGTGTAAGACCCTGTATGGGATGTTGGCATCAACTTATGATT
Found at i:96754967 original size:42 final size:43
Alignment explanation
Indices: 96754890--96754996 Score: 119
Period size: 42 Copynumber: 2.5 Consensus size: 43
96754880 CATCAACTTA
*** *
96754890 TGATTTACGTGTAAGACCACGTATGGGATGTTGGCATTG-TACT
1 TGATTT-CGTGTAAGACCACGTATGGGACAATGGCATCGATACT
*
96754933 TGATTTCGTGTAAGACC-CTGTATGGGACAATGGCATCGATATT
1 TGATTTCGTGTAAGACCAC-GTATGGGACAATGGCATCGATACT
* *
96754976 TGATTACATGTAAGACCACGT
1 TGATTTCGTGTAAGACCACGT
96754997 CTAGGACGTT
Statistics
Matches: 54, Mismatches: 7, Indels: 6
0.81 0.10 0.09
Matches are distributed among these distances:
41 1 0.02
42 26 0.48
43 26 0.48
44 1 0.02
ACGTcount: A:0.26, C:0.16, G:0.25, T:0.33
Consensus pattern (43 bp):
TGATTTCGTGTAAGACCACGTATGGGACAATGGCATCGATACT
Found at i:96755010 original size:43 final size:43
Alignment explanation
Indices: 96754839--96755011 Score: 149
Period size: 43 Copynumber: 4.0 Consensus size: 43
96754829 GACATAGGAT
* * * *
96754839 TCGATATGTG-TTATCGTGTAAGACCATGTCTGGGATGTTGGCA
1 TCGATATTTGATTA-CGTGTAAGACCACGTATGGGACGTTGGCA
*
96754882 TC-A-ACTTATGATTTACGTGTAAGACCACGTATGGGATGTTGGCA
1 TCGATA-TT-TGA-TTACGTGTAAGACCACGTATGGGACGTTGGCA
* * * **
96754926 TTG-TACTTGATTTCGTGTAAGACC-CTGTATGGGACAATGGCA
1 TCGATATTTGATTACGTGTAAGACCAC-GTATGGGACGTTGGCA
* * *
96754968 TCGATATTTGATTACATGTAAGACCACGTCTAGGACGTTGGCA
1 TCGATATTTGATTACGTGTAAGACCACGTATGGGACGTTGGCA
96755011 T
1 T
96755012 TGTATGAGCT
Statistics
Matches: 104, Mismatches: 17, Indels: 18
0.75 0.12 0.13
Matches are distributed among these distances:
41 2 0.02
42 30 0.29
43 38 0.37
44 30 0.29
45 4 0.04
ACGTcount: A:0.25, C:0.16, G:0.26, T:0.33
Consensus pattern (43 bp):
TCGATATTTGATTACGTGTAAGACCACGTATGGGACGTTGGCA
Found at i:96762515 original size:42 final size:43
Alignment explanation
Indices: 96762401--96762528 Score: 129
Period size: 44 Copynumber: 3.0 Consensus size: 43
96762391 TATGTGTTAT
*
96762401 CGTGTAAGACCATGTCTGGGATGTTGGCATCG-ACTTATGATTTA
1 CGTGTAAGACCCTGTCTGGGATGTTGGCATCGAAC-T-TGATTTA
* * *
96762445 CGTGTAAAACCAC-GTTTGGGACGTTGGCATCGAACTTGATTT-
1 CGTGTAAGACC-CTGTCTGGGATGTTGGCATCGAACTTGATTTA
* *
96762487 TGTGTAAGACCCTGTCTGGGATAG-TGGCATCGATATTTGATT
1 CGTGTAAGACCCTGTCTGGGAT-GTTGGCATCGA-ACTTGATT
96762529 ACATGCAAGA
Statistics
Matches: 70, Mismatches: 9, Indels: 11
0.78 0.10 0.12
Matches are distributed among these distances:
41 1 0.01
42 25 0.36
43 14 0.20
44 28 0.40
45 2 0.03
ACGTcount: A:0.23, C:0.16, G:0.27, T:0.34
Consensus pattern (43 bp):
CGTGTAAGACCCTGTCTGGGATGTTGGCATCGAACTTGATTTA
Found at i:96765531 original size:31 final size:31
Alignment explanation
Indices: 96765495--96765556 Score: 115
Period size: 31 Copynumber: 2.0 Consensus size: 31
96765485 AATGTAAATG
*
96765495 TTCTTACAATGCCACTTATCATCAGTTTGAA
1 TTCTTACAATGCCACTTATCATCAATTTGAA
96765526 TTCTTACAATGCCACTTATCATCAATTTGAA
1 TTCTTACAATGCCACTTATCATCAATTTGAA
96765557 CTTAGATAAT
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.39
Consensus pattern (31 bp):
TTCTTACAATGCCACTTATCATCAATTTGAA
Found at i:96774513 original size:43 final size:43
Alignment explanation
Indices: 96774448--96774530 Score: 121
Period size: 43 Copynumber: 1.9 Consensus size: 43
96774438 ACATGTAACA
* *
96774448 CATCCCTAATGAACTCGAACCTCTCAACAAGGTCGGATGCTTG
1 CATCCATAATGAACTCGAACCTCTCAACAAGCTCGGATGCTTG
* * *
96774491 CATCCATAATGAACTTGGACCTCTCAACGAGCTCGGATGC
1 CATCCATAATGAACTCGAACCTCTCAACAAGCTCGGATGC
96774531 CACATATATC
Statistics
Matches: 35, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
43 35 1.00
ACGTcount: A:0.28, C:0.30, G:0.19, T:0.23
Consensus pattern (43 bp):
CATCCATAATGAACTCGAACCTCTCAACAAGCTCGGATGCTTG
Found at i:96774786 original size:22 final size:22
Alignment explanation
Indices: 96774741--96774787 Score: 67
Period size: 22 Copynumber: 2.1 Consensus size: 22
96774731 ATAATTCATA
**
96774741 ATTATAATAAAGCATTTATCAC
1 ATTATAATAAAGCATTTAAAAC
*
96774763 ATTATATTAAAGCATTTAAAAC
1 ATTATAATAAAGCATTTAAAAC
96774785 ATT
1 ATT
96774788 CTACCATACC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.47, C:0.11, G:0.04, T:0.38
Consensus pattern (22 bp):
ATTATAATAAAGCATTTAAAAC
Found at i:96776847 original size:43 final size:45
Alignment explanation
Indices: 96776781--96776867 Score: 124
Period size: 43 Copynumber: 2.0 Consensus size: 45
96776771 TATGTCATTG
* *
96776781 ATATTGAAATGGAAAAGATGAGAAACGA-ATATGAGATG-TGAAA
1 ATATAGAAATGGAAAAGATGAGAAACGAGATATGAAATGATGAAA
* *
96776824 ATATAGAAATGGAAAATATGAGAAATGAGATATGAAATGATGAA
1 ATATAGAAATGGAAAAGATGAGAAACGAGATATGAAATGATGAA
96776868 TTGAAATGTG
Statistics
Matches: 38, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
43 25 0.66
44 9 0.24
45 4 0.11
ACGTcount: A:0.53, C:0.01, G:0.24, T:0.22
Consensus pattern (45 bp):
ATATAGAAATGGAAAAGATGAGAAACGAGATATGAAATGATGAAA
Found at i:96776849 original size:16 final size:16
Alignment explanation
Indices: 96776786--96776850 Score: 61
Period size: 15 Copynumber: 4.4 Consensus size: 16
96776776 CATTGATATT
*
96776786 GAAATGGAAAAGATGA
1 GAAATGGAAAATATGA
*
96776802 GAAA-CG--AATATGA
1 GAAATGGAAAATATGA
96776815 G--ATGTGAAAATAT-A
1 GAAATG-GAAAATATGA
96776829 GAAATGGAAAATATGA
1 GAAATGGAAAATATGA
96776845 GAAATG
1 GAAATG
96776851 AGATATGAAA
Statistics
Matches: 39, Mismatches: 3, Indels: 14
0.70 0.05 0.25
Matches are distributed among these distances:
11 1 0.03
13 8 0.21
14 2 0.05
15 14 0.36
16 14 0.36
ACGTcount: A:0.54, C:0.02, G:0.26, T:0.18
Consensus pattern (16 bp):
GAAATGGAAAATATGA
Found at i:96784940 original size:16 final size:16
Alignment explanation
Indices: 96784921--96784951 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
96784911 CTTCTTCACT
96784921 TACTCACTTACTTAAA
1 TACTCACTTACTTAAA
*
96784937 TACTTACTTACTTAA
1 TACTCACTTACTTAA
96784952 TCAAATTTAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.23, G:0.00, T:0.42
Consensus pattern (16 bp):
TACTCACTTACTTAAA
Found at i:96784957 original size:20 final size:20
Alignment explanation
Indices: 96784918--96784957 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
96784908 AAACTTCTTC
* *
96784918 ACTTACTCACTTACTTAAAT
1 ACTTACTCACTTAATCAAAT
*
96784938 ACTTACTTACTTAATCAAAT
1 ACTTACTCACTTAATCAAAT
96784958 TTATTAATAT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.38, C:0.23, G:0.00, T:0.40
Consensus pattern (20 bp):
ACTTACTCACTTAATCAAAT
Found at i:96785072 original size:23 final size:24
Alignment explanation
Indices: 96785030--96785074 Score: 65
Period size: 23 Copynumber: 1.9 Consensus size: 24
96785020 TTTGCTCTTC
*
96785030 TAGCATGAACTTGTCCTACCTTTT
1 TAGCATGAACTCGTCCTACCTTTT
*
96785054 TAGCAT-AACTCGTCTTACCTT
1 TAGCATGAACTCGTCCTACCTT
96785075 ACCTTACCTT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
23 13 0.68
24 6 0.32
ACGTcount: A:0.22, C:0.27, G:0.11, T:0.40
Consensus pattern (24 bp):
TAGCATGAACTCGTCCTACCTTTT
Found at i:96800679 original size:3 final size:3
Alignment explanation
Indices: 96800664--96800715 Score: 50
Period size: 3 Copynumber: 16.3 Consensus size: 3
96800654 CATGTTTTAC
* * *
96800664 TAT TAT TAA TAT TAT TAT TGT TAT TAT TAT TGTT TATT TAT TATT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T-AT TA-T TAT TA-T TAT
96800712 TAT T
1 TAT T
96800716 GTCATTTATT
Statistics
Matches: 40, Mismatches: 6, Indels: 6
0.77 0.12 0.12
Matches are distributed among these distances:
3 32 0.80
4 8 0.20
ACGTcount: A:0.29, C:0.00, G:0.04, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:96800695 original size:12 final size:13
Alignment explanation
Indices: 96800673--96800708 Score: 56
Period size: 12 Copynumber: 2.8 Consensus size: 13
96800663 CTATTATTAA
96800673 TATTATTATTG-T
1 TATTATTATTGTT
96800685 TATTATTATTGTT
1 TATTATTATTGTT
96800698 TATTTATTATT
1 TA-TTATTATT
96800709 TATTATTGTC
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
12 11 0.50
13 3 0.14
14 8 0.36
ACGTcount: A:0.25, C:0.00, G:0.06, T:0.69
Consensus pattern (13 bp):
TATTATTATTGTT
Found at i:96800711 original size:21 final size:21
Alignment explanation
Indices: 96800687--96800737 Score: 77
Period size: 21 Copynumber: 2.4 Consensus size: 21
96800677 ATTATTGTTA
*
96800687 TTATTATTGTTTATTTATT-AT
1 TTATTATTG-TCATTTATTCAT
96800708 TTATTATTGTCATTTATTCAT
1 TTATTATTGTCATTTATTCAT
96800729 TTATTATTG
1 TTATTATTG
96800738 CCGTTGTTAT
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
20 8 0.29
21 20 0.71
ACGTcount: A:0.24, C:0.04, G:0.06, T:0.67
Consensus pattern (21 bp):
TTATTATTGTCATTTATTCAT
Found at i:96800735 original size:24 final size:20
Alignment explanation
Indices: 96800684--96800736 Score: 52
Period size: 24 Copynumber: 2.4 Consensus size: 20
96800674 ATTATTATTG
*
96800684 TTATTATTATTGTTTATTTA
1 TTATTATTATTGTTTATTCA
96800704 TTATTTATTATTGTCATTTATTCA
1 TTA-TTATTATTG---TTTATTCA
96800728 TTTATTATT
1 -TTATTATT
96800737 GCCGTTGTTA
Statistics
Matches: 27, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
20 3 0.11
21 9 0.33
24 12 0.44
25 3 0.11
ACGTcount: A:0.25, C:0.04, G:0.04, T:0.68
Consensus pattern (20 bp):
TTATTATTATTGTTTATTCA
Found at i:96807898 original size:43 final size:44
Alignment explanation
Indices: 96807778--96807899 Score: 155
Period size: 43 Copynumber: 2.8 Consensus size: 44
96807768 AGCTCATACA
*
96807778 ATGCCAAC-GTCCCAGACGTGGTCTTACATGT-AATCAAATATCG
1 ATGCC-ACTGTCCCAGACATGGTCTTACATGTAAATCAAATATCG
*
96807821 ATGCCACTGTCCCAGACAGGGTCTTACATG-AAATCAAATA-CG
1 ATGCCACTGTCCCAGACATGGTCTTACATGTAAATCAAATATCG
* *
96807863 ATGTCGA-TGTCCCAGACATGGTCTTACACGTAAATCA
1 ATG-CCACTGTCCCAGACATGGTCTTACATGTAAATCA
96807900 TAAGTCAATG
Statistics
Matches: 70, Mismatches: 5, Indels: 8
0.84 0.06 0.10
Matches are distributed among these distances:
42 28 0.40
43 42 0.60
ACGTcount: A:0.31, C:0.25, G:0.19, T:0.25
Consensus pattern (44 bp):
ATGCCACTGTCCCAGACATGGTCTTACATGTAAATCAAATATCG
Found at i:96808322 original size:8 final size:8
Alignment explanation
Indices: 96808309--96808333 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
96808299 AAATTAACCC
96808309 TCACATTT
1 TCACATTT
96808317 TCACATTT
1 TCACATTT
96808325 TCACATTT
1 TCACATTT
96808333 T
1 T
96808334 AGTCCCTAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.24, C:0.24, G:0.00, T:0.52
Consensus pattern (8 bp):
TCACATTT
Found at i:96814700 original size:55 final size:55
Alignment explanation
Indices: 96814597--96814701 Score: 138
Period size: 55 Copynumber: 1.9 Consensus size: 55
96814587 TACTTCACCT
* ** * * *
96814597 AAAAAAGGGGAGAGGCCACTGCGAAAACCCGTAAAGGGCACTTTGAGACCTTCTA
1 AAAAAAAGGGAGAGGCCAAGGCGAAAACCCGCAAAGGGCACCTCGAGACCTTCTA
**
96814652 AAAAAAAGGGAGAGGCCAAGGCGAAAACCCGCAAAGGGTGCCTCGAGACC
1 AAAAAAAGGGAGAGGCCAAGGCGAAAACCCGCAAAGGGCACCTCGAGACC
96814702 AAAGGGGTTT
Statistics
Matches: 42, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
55 42 1.00
ACGTcount: A:0.38, C:0.23, G:0.30, T:0.10
Consensus pattern (55 bp):
AAAAAAAGGGAGAGGCCAAGGCGAAAACCCGCAAAGGGCACCTCGAGACCTTCTA
Found at i:96817624 original size:12 final size:13
Alignment explanation
Indices: 96817602--96817637 Score: 56
Period size: 12 Copynumber: 2.8 Consensus size: 13
96817592 CTATTATTAA
96817602 TATTATTATTG-T
1 TATTATTATTGTT
96817614 TATTATTATTGTT
1 TATTATTATTGTT
96817627 TATTTATTATT
1 TA-TTATTATT
96817638 TAATTAGTAT
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
12 11 0.50
13 3 0.14
14 8 0.36
ACGTcount: A:0.25, C:0.00, G:0.06, T:0.69
Consensus pattern (13 bp):
TATTATTATTGTT
Found at i:96829012 original size:48 final size:48
Alignment explanation
Indices: 96828955--96829049 Score: 154
Period size: 48 Copynumber: 2.0 Consensus size: 48
96828945 CACATGGTAG
* * * *
96828955 GATGCCAATGCCATATCTCGGATATTGTCTTACATGGGATCACATATC
1 GATGCCAATGCCATATCCCAGACATGGTCTTACATGGGATCACATATC
96829003 GATGCCAATGCCATATCCCAGACATGGTCTTACATGGGATCACATAT
1 GATGCCAATGCCATATCCCAGACATGGTCTTACATGGGATCACATAT
96829050 TGATATCGAT
Statistics
Matches: 43, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
48 43 1.00
ACGTcount: A:0.28, C:0.24, G:0.19, T:0.28
Consensus pattern (48 bp):
GATGCCAATGCCATATCCCAGACATGGTCTTACATGGGATCACATATC
Found at i:96831272 original size:298 final size:298
Alignment explanation
Indices: 96830736--96831330 Score: 1172
Period size: 298 Copynumber: 2.0 Consensus size: 298
96830726 TTTTTGTCCA
96830736 TCTTCTTCATTAGGATGAAATTTCAAGGGTTCTCCATAGCTAGGGTTTGTTTCAAGCTTTCAAAC
1 TCTTCTTCATTAGGATGAAATTTCAAGGGTTCTCCATAGCTAGGGTTTGTTTCAAGCTTTCAAAC
96830801 TCCACAGTAAGTGATTCCAAGCCCCGTTTTTAATGATCTTTACGTTTTTGGAGTCCCGATAACTT
66 TCCACAGTAAGTGATTCCAAGCCCCGTTTTTAATGATCTTTACGTTTTTGGAGTCCCGATAACTT
96830866 AATTAAGCTTATTCTAGCAATAATTCAACCTAGGGTTCATATTTAGAAAAATACCCATAGGTGAA
131 AATTAAGCTTATTCTAGCAATAATTCAACCTAGGGTTCATATTTAGAAAAATACCCATAGGTGAA
96830931 ATTTTTGTATTTTGGTGTTTTATGATAGAATATGAGGTTTTTAATTATGTTAGACAACTTGTGCT
196 ATTTTTGTATTTTGGTGTTTTATGATAGAATATGAGGTTTTTAATTATGTTAGACAACTTGTGCT
96830996 ACTCGGTTTTAAATGAAAACGAGTAAAAGGGCTTAATC
261 ACTCGGTTTTAAATGAAAACGAGTAAAAGGGCTTAATC
96831034 TCTTCTTCATTAGGATGAAATTTCAAGGGTTCTCCATAGCTAGGGTTTGTTTCAAGCTTTCAAAC
1 TCTTCTTCATTAGGATGAAATTTCAAGGGTTCTCCATAGCTAGGGTTTGTTTCAAGCTTTCAAAC
96831099 TCCACAGTAAGTGATTCCAAGCCCCGTTTTTAATGATCTTTACGTTTTTGGAGTCCCGATAACTT
66 TCCACAGTAAGTGATTCCAAGCCCCGTTTTTAATGATCTTTACGTTTTTGGAGTCCCGATAACTT
96831164 AATTAAGCTTATTCTAGCAATAATTCAACCTAGGGTTCATATTTAGAAAAATACCCATAGGTGAA
131 AATTAAGCTTATTCTAGCAATAATTCAACCTAGGGTTCATATTTAGAAAAATACCCATAGGTGAA
96831229 ATTTTTGTATTTTGGTGTTTTATGATAGAATATGAGGTTTTTAATTATGTTAGACAACTTGTGCT
196 ATTTTTGTATTTTGGTGTTTTATGATAGAATATGAGGTTTTTAATTATGTTAGACAACTTGTGCT
* *
96831294 ACTCGGTTTTAATTGAAAATGAGTAAAAGGGCTTAAT
261 ACTCGGTTTTAAATGAAAACGAGTAAAAGGGCTTAAT
96831331 TGGTAAAAAT
Statistics
Matches: 295, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
298 295 1.00
ACGTcount: A:0.29, C:0.15, G:0.18, T:0.38
Consensus pattern (298 bp):
TCTTCTTCATTAGGATGAAATTTCAAGGGTTCTCCATAGCTAGGGTTTGTTTCAAGCTTTCAAAC
TCCACAGTAAGTGATTCCAAGCCCCGTTTTTAATGATCTTTACGTTTTTGGAGTCCCGATAACTT
AATTAAGCTTATTCTAGCAATAATTCAACCTAGGGTTCATATTTAGAAAAATACCCATAGGTGAA
ATTTTTGTATTTTGGTGTTTTATGATAGAATATGAGGTTTTTAATTATGTTAGACAACTTGTGCT
ACTCGGTTTTAAATGAAAACGAGTAAAAGGGCTTAATC
Found at i:96831942 original size:55 final size:54
Alignment explanation
Indices: 96831853--96832108 Score: 246
Period size: 55 Copynumber: 4.8 Consensus size: 54
96831843 CATTAGGGTT
**
96831853 CAAGGATACCATGTAAGACCATG-CTAAGGTATGGCAATTGGTAAGGTTTCTAAGG
1 CAAGGATACCATGTAAGACCATGTC-AAGACATGGCAATTGGTAA-GTTTCTAAGG
* * * *
96831908 CAAGGAAATCATGTAAGACCATGTCAAGACATGGC-ATTGATAAGTTACTATAAGG
1 CAAGGATACCATGTAAGACCATGTCAAGACATGGCAATTGGTAAGTT--TCTAAGG
* * * *
96831963 CAAAGG-TCCCATGTAAGACCATGCCAAGGCATGGC-ATTGGTGAG-TTCATAAGG
1 C-AAGGATACCATGTAAGACCATGTCAAGACATGGCAATTGGTAAGTTTC-TAAGG
*
96832016 CAAGGCTACCATGTAAGACCATGTCAAGACATGGCAA-TGGTAAGTTTC-AA--
1 CAAGGATACCATGTAAGACCATGTCAAGACATGGCAATTGGTAAGTTTCTAAGG
* ** *
96832066 -AAGGATACCACGTAAGACCATGAAAAGTCATGGCAA-TGGTAAG
1 CAAGGATACCATGTAAGACCATGTCAAGACATGGCAATTGGTAAG
96832109 GTACCCGTGT
Statistics
Matches: 170, Mismatches: 23, Indels: 22
0.79 0.11 0.10
Matches are distributed among these distances:
49 38 0.22
52 7 0.04
53 41 0.24
54 12 0.07
55 67 0.39
56 5 0.03
ACGTcount: A:0.36, C:0.17, G:0.25, T:0.22
Consensus pattern (54 bp):
CAAGGATACCATGTAAGACCATGTCAAGACATGGCAATTGGTAAGTTTCTAAGG
Found at i:96832060 original size:108 final size:110
Alignment explanation
Indices: 96831861--96832061 Score: 300
Period size: 108 Copynumber: 1.8 Consensus size: 110
96831851 TTCAAGGATA
* * *
96831861 CCATGTAAGACCATGCTAAGGTATGGCAATTGGTAAGGTTTCTAAGGCAAGGAAATCATGTAAGA
1 CCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGCAAGGAAACCATGTAAGA
*
96831926 CCATGTCAAGACATGGCATTGATAAGTTACTATAAGGCAAAGGTC
66 CCATGTCAAGACATGGCAATGATAAGTTACTATAAGGCAAAGGTC
* **
96831971 CCATGTAAGACCATGCCAAGGCATGGC-ATTGGTGA-G-TTCATAAGGCAAGGCTACCATGTAAG
1 CCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTC-TAAGGCAAGGAAACCATGTAAG
*
96832033 ACCATGTCAAGACATGGCAATGGTAAGTT
65 ACCATGTCAAGACATGGCAATGATAAGTT
96832062 TCAAAAGGAT
Statistics
Matches: 82, Mismatches: 8, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
107 3 0.04
108 47 0.57
109 7 0.09
110 25 0.30
ACGTcount: A:0.34, C:0.17, G:0.25, T:0.23
Consensus pattern (110 bp):
CCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGCAAGGAAACCATGTAAGA
CCATGTCAAGACATGGCAATGATAAGTTACTATAAGGCAAAGGTC
Found at i:96839618 original size:53 final size:55
Alignment explanation
Indices: 96839486--96839618 Score: 173
Period size: 55 Copynumber: 2.5 Consensus size: 55
96839476 GAAAGGAAAT
*
96839486 CATGTAAGACCATGTCAAGACATGGCATTGATAAGTTACTATAAGGCGAAGGTTC
1 CATGTAAGACCATGTCAAGACATGGCATTGATAAGTTACTATAAGGCGAAGGTAC
* * * *
96839541 CATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTT-C-ATAAGGC-AAGGCTAC
1 CATGTAAGACCATGTCAAGACATGGCATTGATAAGTTACTATAAGGCGAAGG-TAC
* *
96839594 CGTGTAAGACAATGTCAAGACATGG
1 CATGTAAGACCATGTCAAGACATGG
96839619 AAATTGTAAC
Statistics
Matches: 68, Mismatches: 9, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
52 4 0.06
53 30 0.44
54 1 0.01
55 33 0.49
ACGTcount: A:0.33, C:0.18, G:0.26, T:0.23
Consensus pattern (55 bp):
CATGTAAGACCATGTCAAGACATGGCATTGATAAGTTACTATAAGGCGAAGGTAC
Found at i:96841032 original size:37 final size:37
Alignment explanation
Indices: 96840982--96841060 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
96840972 TTATTACGAA
* * *
96840982 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
96841019 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
96841056 GTCTT
1 GTCTT
96841061 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:96841253 original size:49 final size:49
Alignment explanation
Indices: 96841181--96842204 Score: 1948
Period size: 49 Copynumber: 21.0 Consensus size: 49
96841171 CTTCGGGACT
* * * * *
96841181 TATCACAT-T-TATACACTTTCACATCCATCACGTTGGCCACTCGGCCC
1 TATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
* * *
96841228 TGTCACATATATATACACTTCCACATTCATCACATCGGCCATTAGGCCT
1 TATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
96841277 TATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
1 TATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
96841324 TATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
1 TATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
96841373 TATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
1 TATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
96841422 TATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
1 TATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
96841471 TATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
1 TATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
96841520 TATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
1 TATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
96841569 TATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
1 TATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
96841618 TATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
1 TATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
96841667 TATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
1 TATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
96841716 TATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
1 TATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
96841765 TATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
1 TATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
96841814 TATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
1 TATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
96841863 TATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
1 TATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
96841912 TATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
1 TATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
96841961 TATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
1 TATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
96842010 TATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
1 TATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
96842059 TATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
1 TATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
96842108 TATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
1 TATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
96842157 TATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCC
1 TATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCC
96842205 TTACTATCAT
Statistics
Matches: 962, Mismatches: 11, Indels: 6
0.98 0.01 0.01
Matches are distributed among these distances:
47 52 0.05
48 1 0.00
49 909 0.94
ACGTcount: A:0.30, C:0.31, G:0.08, T:0.31
Consensus pattern (49 bp):
TATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
Found at i:96846065 original size:40 final size:40
Alignment explanation
Indices: 96846008--96846110 Score: 143
Period size: 40 Copynumber: 2.6 Consensus size: 40
96845998 CCAGCATGAT
* * *
96846008 TGCTCTTCGGGATTTAGCATGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCACGGATACATCACTAGCACGAA
* * *
96846048 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCATGAA
1 TGCTCTTCGGGACTTAGCACGGATACATCACTAGCACGAA
*
96846088 TGCTCTTCGGGACTTAGCCCGGA
1 TGCTCTTCGGGACTTAGCACGGA
96846111 CATCATTCGA
Statistics
Matches: 56, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
40 56 1.00
ACGTcount: A:0.24, C:0.25, G:0.23, T:0.27
Consensus pattern (40 bp):
TGCTCTTCGGGACTTAGCACGGATACATCACTAGCACGAA
Found at i:96846493 original size:29 final size:29
Alignment explanation
Indices: 96846418--96846496 Score: 97
Period size: 29 Copynumber: 2.7 Consensus size: 29
96846408 CTTAATAATC
* *
96846418 AACCACGCACACTTAGTACCATGTACTTTA
1 AACC-CGCACACTTAGTGCCATGCACTTTA
*
96846448 AACTCGCACACTTAGTGCCATGCA-TTTCA
1 AACCCGCACACTTAGTGCCATGCACTTT-A
*
96846477 AGCCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
96846497 ATCTCACAAC
Statistics
Matches: 43, Mismatches: 5, Indels: 3
0.84 0.10 0.06
Matches are distributed among these distances:
28 3 0.07
29 37 0.86
30 3 0.07
ACGTcount: A:0.29, C:0.33, G:0.14, T:0.24
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCACTTTA
Found at i:96846526 original size:43 final size:43
Alignment explanation
Indices: 96846478--96846580 Score: 197
Period size: 43 Copynumber: 2.4 Consensus size: 43
96846468 TGCATTTCAA
96846478 GCCCGCACACTTAGTGCCAATCTCACAACCATGAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCATGAACACTTATT
*
96846521 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCATGAACACTTATT
96846564 GCCCGCACACTTAGTGC
1 GCCCGCACACTTAGTGC
96846581 TGAAAACCAA
Statistics
Matches: 59, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
43 59 1.00
ACGTcount: A:0.27, C:0.36, G:0.15, T:0.22
Consensus pattern (43 bp):
GCCCGCACACTTAGTGCCAATCTCACAACCATGAACACTTATT
Found at i:96848497 original size:37 final size:37
Alignment explanation
Indices: 96848447--96848525 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
96848437 TTATTACGAA
* * *
96848447 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
96848484 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
96848521 GTCTT
1 GTCTT
96848526 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:96848731 original size:47 final size:47
Alignment explanation
Indices: 96848680--96848794 Score: 140
Period size: 47 Copynumber: 2.4 Consensus size: 47
96848670 CCATTACGTT
* * * * *
96848680 GGCCACTCGGCCTTGTCACATATATACACTTTCACATTCGTCACATC
1 GGCCACTAGGCCCTATCACACATATACACTTTCACATTCATCACATC
* *
96848727 GGCCATTAGGCCCTATCACACATATACACTTTCACATTCATCACGTC
1 GGCCACTAGGCCCTATCACACATATACACTTTCACATTCATCACATC
* * *
96848774 GGCTATTAGGCCTTATCACAC
1 GGCCACTAGGCCCTATCACAC
96848795 CTGACACAAA
Statistics
Matches: 59, Mismatches: 9, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
47 59 1.00
ACGTcount: A:0.25, C:0.33, G:0.13, T:0.29
Consensus pattern (47 bp):
GGCCACTAGGCCCTATCACACATATACACTTTCACATTCATCACATC
Found at i:96848911 original size:173 final size:173
Alignment explanation
Indices: 96848622--96848965 Score: 670
Period size: 173 Copynumber: 2.0 Consensus size: 173
96848612 GGATATAGTA
96848622 CTGACACAAATGCCTTTCGGGACTTATCACATTTATGCACTTCCACATCCATTACGTTGGCCACT
1 CTGACACAAATGCCTTTCGGGACTTATCACATTTATGCACTTCCACATCCATTACGTTGGCCACT
96848687 CGGCCTTGTCACATATATACACTTTCACATTCGTCACATCGGCCATTAGGCCCTATCACACATAT
66 CGGCCTTGTCACATATATACACTTTCACATTCGTCACATCGGCCATTAGGCCCTATCACACATAT
96848752 ACACTTTCACATTCATCACGTCGGCTATTAGGCCTTATCACAC
131 ACACTTTCACATTCATCACGTCGGCTATTAGGCCTTATCACAC
96848795 CTGACACAAATGCCTTTCGGGACTTATCACATTTATGCACTTCCACATCCATTACGTTGGCCACT
1 CTGACACAAATGCCTTTCGGGACTTATCACATTTATGCACTTCCACATCCATTACGTTGGCCACT
* *
96848860 CGGCCTTGTCACATATATACACTTTCACATTCGTCACATCGGCCATTAGGCCTTATCACATATAT
66 CGGCCTTGTCACATATATACACTTTCACATTCGTCACATCGGCCATTAGGCCCTATCACACATAT
96848925 ACACTTTCACATTCATCACGTCGGCTATTAGGCCTTATCAC
131 ACACTTTCACATTCATCACGTCGGCTATTAGGCCTTATCAC
96848966 GTATATACAC
Statistics
Matches: 169, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
173 169 1.00
ACGTcount: A:0.25, C:0.31, G:0.13, T:0.31
Consensus pattern (173 bp):
CTGACACAAATGCCTTTCGGGACTTATCACATTTATGCACTTCCACATCCATTACGTTGGCCACT
CGGCCTTGTCACATATATACACTTTCACATTCGTCACATCGGCCATTAGGCCCTATCACACATAT
ACACTTTCACATTCATCACGTCGGCTATTAGGCCTTATCACAC
Found at i:96849039 original size:49 final size:47
Alignment explanation
Indices: 96848817--96849057 Score: 329
Period size: 47 Copynumber: 5.1 Consensus size: 47
96848807 CCTTTCGGGA
* * * * * * * * *
96848817 CTTATCACATTTATGCACTTCCACATCCATTACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
96848864 CTTGTCACATATATACACTTTCACATTCGTCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
96848911 CTTATCACATATATACACTTTCACATTCATCACGTCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
96848958 CTTATCACGTATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
96849005 CCTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
96849054 CTTA
1 CTTA
96849058 CTATCATTTC
Statistics
Matches: 171, Mismatches: 21, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
47 130 0.76
49 41 0.24
ACGTcount: A:0.27, C:0.30, G:0.11, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:96852641 original size:14 final size:14
Alignment explanation
Indices: 96852624--96852657 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
96852614 ATATGTTATA
96852624 ATAATAAAATGTAT
1 ATAATAAAATGTAT
* *
96852638 ATAATTATATGTAT
1 ATAATAAAATGTAT
96852652 ATAATA
1 ATAATA
96852658 TAAGTTATGA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.53, C:0.00, G:0.06, T:0.41
Consensus pattern (14 bp):
ATAATAAAATGTAT
Found at i:96860663 original size:18 final size:17
Alignment explanation
Indices: 96860636--96860669 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
96860626 ATCTCTGAAG
96860636 CACATATTTAATAACTTT
1 CACATATTTAA-AACTTT
*
96860654 CACATGTTTAAAACTT
1 CACATATTTAAAACTT
96860670 ATATCTCCCC
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 5 0.33
18 10 0.67
ACGTcount: A:0.38, C:0.18, G:0.03, T:0.41
Consensus pattern (17 bp):
CACATATTTAAAACTTT
Found at i:96862700 original size:48 final size:48
Alignment explanation
Indices: 96862625--96862767 Score: 232
Period size: 48 Copynumber: 3.0 Consensus size: 48
96862615 ACTCGAAAGT
* * * *
96862625 CTCACACCCTAAGTGCCAATATCATGGCTCGAAGCCAAGTCAATGAAG
1 CTCACACCCGAAGTGCCGATATCATGGCCCGAAGCCAAATCAATGAAG
*
96862673 CTCGCACCCGAAGTGCCGATATCATGGCCCGAAGCCAAATCAATGAAG
1 CTCACACCCGAAGTGCCGATATCATGGCCCGAAGCCAAATCAATGAAG
*
96862721 CTTACACCCGAAGTGCCGATATCATGGCCCGAAGCCAAATCAATGAA
1 CTCACACCCGAAGTGCCGATATCATGGCCCGAAGCCAAATCAATGAA
96862768 TTCCCTAATG
Statistics
Matches: 88, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
48 88 1.00
ACGTcount: A:0.33, C:0.30, G:0.20, T:0.17
Consensus pattern (48 bp):
CTCACACCCGAAGTGCCGATATCATGGCCCGAAGCCAAATCAATGAAG
Found at i:96863030 original size:27 final size:27
Alignment explanation
Indices: 96862991--96863059 Score: 75
Period size: 27 Copynumber: 2.5 Consensus size: 27
96862981 AGAACTTTGT
* *
96862991 CTTTCCTTCGATCTAGATCCGAGTTTCA
1 CTTTTCTT-GATCTAGATCCAAGTTTCA
* ** *
96863019 CTTTTCTTGATCTATATGTAATTTTCA
1 CTTTTCTTGATCTAGATCCAAGTTTCA
96863046 CTTTTCTTGATCTA
1 CTTTTCTTGATCTA
96863060 TATGTAATCA
Statistics
Matches: 35, Mismatches: 6, Indels: 1
0.83 0.14 0.02
Matches are distributed among these distances:
27 28 0.80
28 7 0.20
ACGTcount: A:0.19, C:0.22, G:0.10, T:0.49
Consensus pattern (27 bp):
CTTTTCTTGATCTAGATCCAAGTTTCA
Found at i:96863060 original size:27 final size:27
Alignment explanation
Indices: 96863014--96863067 Score: 108
Period size: 27 Copynumber: 2.0 Consensus size: 27
96863004 TAGATCCGAG
96863014 TTTCACTTTTCTTGATCTATATGTAAT
1 TTTCACTTTTCTTGATCTATATGTAAT
96863041 TTTCACTTTTCTTGATCTATATGTAAT
1 TTTCACTTTTCTTGATCTATATGTAAT
96863068 CAAAATTAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.22, C:0.15, G:0.07, T:0.56
Consensus pattern (27 bp):
TTTCACTTTTCTTGATCTATATGTAAT
Found at i:96865467 original size:39 final size:39
Alignment explanation
Indices: 96865413--96865491 Score: 149
Period size: 39 Copynumber: 2.0 Consensus size: 39
96865403 TGTTCGGTAC
*
96865413 ACACCTGATTCGCGACGACTGCTACTGAGATCTCTTCCG
1 ACACCTGATTCGCGACGACTGCTACCGAGATCTCTTCCG
96865452 ACACCTGATTCGCGACGACTGCTACCGAGATCTCTTCCG
1 ACACCTGATTCGCGACGACTGCTACCGAGATCTCTTCCG
96865491 A
1 A
96865492 TGTCCTACAA
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
39 39 1.00
ACGTcount: A:0.22, C:0.34, G:0.20, T:0.24
Consensus pattern (39 bp):
ACACCTGATTCGCGACGACTGCTACCGAGATCTCTTCCG
Found at i:96870887 original size:38 final size:38
Alignment explanation
Indices: 96870844--96870919 Score: 143
Period size: 38 Copynumber: 2.0 Consensus size: 38
96870834 ATACAACCAG
*
96870844 ATAGTTGTAGCCCTGGAGGGCTAGCATAAGACAACTTT
1 ATAGTTGTAGCCCTCGAGGGCTAGCATAAGACAACTTT
96870882 ATAGTTGTAGCCCTCGAGGGCTAGCATAAGACAACTTT
1 ATAGTTGTAGCCCTCGAGGGCTAGCATAAGACAACTTT
96870920 CACTTGCTCG
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
38 37 1.00
ACGTcount: A:0.29, C:0.20, G:0.25, T:0.26
Consensus pattern (38 bp):
ATAGTTGTAGCCCTCGAGGGCTAGCATAAGACAACTTT
Found at i:96872964 original size:46 final size:46
Alignment explanation
Indices: 96872907--96872997 Score: 119
Period size: 46 Copynumber: 2.0 Consensus size: 46
96872897 GAGAATATGG
**
96872907 ATTCAGGTTCCCAGTTCCTGTATACGTTACAAACTAGAGAATACAA
1 ATTCAGGTTCCCAACTCCTGTATACGTTACAAACTAGAGAATACAA
* * * * *
96872953 ATTCAGGTTCCCAACTCTTGTATATGTTGCGAACTTGAGAATACA
1 ATTCAGGTTCCCAACTCCTGTATACGTTACAAACTAGAGAATACA
96872998 TGTTTACGCT
Statistics
Matches: 38, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
46 38 1.00
ACGTcount: A:0.32, C:0.21, G:0.16, T:0.31
Consensus pattern (46 bp):
ATTCAGGTTCCCAACTCCTGTATACGTTACAAACTAGAGAATACAA
Found at i:96874819 original size:70 final size:70
Alignment explanation
Indices: 96874736--96875080 Score: 552
Period size: 70 Copynumber: 5.0 Consensus size: 70
96874726 TATGCTATTG
* *
96874736 TAAA-TATTGGTTGTCCAAATTAGGACAAATTCATGGTTCTTAGCTAATTAATATGTTGCTATTA
1 TAAATTATTGGTTGTCCAAATTAGGACAAATTCATGGTGCTTAGCTAATTAATATGTTGCTGTTA
96874800 TACTA
66 TACTA
* * *
96874805 TAAATTATTGGTTGTCCAAAATAGGATAAATTCATGGTGCTTAGCTAGTTAATATGTTGCTGTTA
1 TAAATTATTGGTTGTCCAAATTAGGACAAATTCATGGTGCTTAGCTAATTAATATGTTGCTGTTA
*
96874870 TACTT
66 TACTA
96874875 TAAATTATTGGTTGTCCAAATTAGGACAAATTCATGGTGCTTAGCTAATTAATATGCTT-CTGTT
1 TAAATTATTGGTTGTCCAAATTAGGACAAATTCATGGTGCTTAGCTAATTAATATG-TTGCTGTT
*
96874939 ATACTG
65 ATACTA
* * *
96874945 TAAATTATTGGCTGTACAAATTAGGACAAATTTATGGTGCTTAGCTAATTAATATGTTGCTGTTA
1 TAAATTATTGGTTGTCCAAATTAGGACAAATTCATGGTGCTTAGCTAATTAATATGTTGCTGTTA
96875010 TACTA
66 TACTA
* *
96875015 TAAATTATTGGTTGTCCAAATTAGGACAAATTCATGGTG-TTAGCTAATTAAAATGTTGTTGTTA
1 TAAATTATTGGTTGTCCAAATTAGGACAAATTCATGGTGCTTAGCTAATTAATATGTTGCTGTTA
96875079 TA
66 TA
96875081 ATATGAATCG
Statistics
Matches: 254, Mismatches: 19, Indels: 6
0.91 0.07 0.02
Matches are distributed among these distances:
69 31 0.12
70 221 0.87
71 2 0.01
ACGTcount: A:0.32, C:0.10, G:0.17, T:0.41
Consensus pattern (70 bp):
TAAATTATTGGTTGTCCAAATTAGGACAAATTCATGGTGCTTAGCTAATTAATATGTTGCTGTTA
TACTA
Found at i:96880307 original size:25 final size:25
Alignment explanation
Indices: 96880260--96880307 Score: 60
Period size: 25 Copynumber: 1.9 Consensus size: 25
96880250 TTATATTATG
* * *
96880260 AAAATGACTATTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
*
96880285 AAAATGACCATTATACCCTTAGG
1 AAAATGACCATTATACCCCTAGG
96880308 GTTTAATTAT
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 19 1.00
ACGTcount: A:0.35, C:0.21, G:0.15, T:0.29
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:96880368 original size:20 final size:20
Alignment explanation
Indices: 96880343--96880429 Score: 140
Period size: 20 Copynumber: 4.3 Consensus size: 20
96880333 GTTTTGGCAT
96880343 ACATGAT-TGATATGATATGC
1 ACATGATATG-TATGATATGC
96880363 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
*
96880383 TCATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
*
96880403 ACAAGATATGTATGATATGC
1 ACATGATATGTATGATATGC
96880423 ACATGAT
1 ACATGAT
96880430 GTATTCATAA
Statistics
Matches: 62, Mismatches: 4, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
20 60 0.97
21 2 0.03
ACGTcount: A:0.36, C:0.10, G:0.20, T:0.34
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:96880370 original size:11 final size:10
Alignment explanation
Indices: 96880354--96880429 Score: 59
Period size: 11 Copynumber: 7.5 Consensus size: 10
96880344 CATGATTGAT
96880354 ATGATATGCAC
1 ATGATATGC-C
*
96880365 ATGATATG-T
1 ATGATATGCC
96880374 ATGATATGCTC
1 ATGATATGC-C
*
96880385 ATGATATG-T
1 ATGATATGCC
96880394 ATGATATGCAC
1 ATGATATGC-C
* *
96880405 AAGATATG-T
1 ATGATATGCC
96880414 ATGATATGCAC
1 ATGATATGC-C
96880425 ATGAT
1 ATGAT
96880430 GTATTCATAA
Statistics
Matches: 51, Mismatches: 8, Indels: 12
0.72 0.11 0.17
Matches are distributed among these distances:
9 23 0.45
11 28 0.55
ACGTcount: A:0.36, C:0.11, G:0.20, T:0.34
Consensus pattern (10 bp):
ATGATATGCC
Found at i:96880377 original size:9 final size:9
Alignment explanation
Indices: 96880365--96880421 Score: 60
Period size: 9 Copynumber: 5.9 Consensus size: 9
96880355 TGATATGCAC
96880365 ATGATATGT
1 ATGATATGT
96880374 ATGATATGCT
1 ATGATATG-T
96880384 CATGATATGT
1 -ATGATATGT
*
96880394 ATGATATGCAC
1 ATGATATG--T
*
96880405 AAGATATGT
1 ATGATATGT
96880414 ATGATATG
1 ATGATATG
96880422 CACATGATGT
Statistics
Matches: 40, Mismatches: 4, Indels: 8
0.77 0.08 0.15
Matches are distributed among these distances:
9 23 0.57
10 2 0.05
11 15 0.38
ACGTcount: A:0.35, C:0.07, G:0.21, T:0.37
Consensus pattern (9 bp):
ATGATATGT
Found at i:96880443 original size:40 final size:39
Alignment explanation
Indices: 96880343--96880443 Score: 114
Period size: 40 Copynumber: 2.5 Consensus size: 39
96880333 GTTTTGGCAT
* * *
96880343 ACATGATTGATATGATATGCACATGATATGTATGATATGC
1 ACATGAATG-TATCATATGCACAAGATATGTATGATATGC
* *
96880383 TCATGATATGTATGATATGCACAAGATATGTATGATATGC
1 ACATGA-ATGTATCATATGCACAAGATATGTATGATATGC
96880423 ACATG-ATGTATTCATAATGCA
1 ACATGAATGTA-TCAT-ATGCA
96880444 TTGGGTTAGG
Statistics
Matches: 53, Mismatches: 5, Indels: 6
0.83 0.08 0.09
Matches are distributed among these distances:
38 5 0.09
39 3 0.06
40 43 0.81
41 2 0.04
ACGTcount: A:0.36, C:0.11, G:0.19, T:0.35
Consensus pattern (39 bp):
ACATGAATGTATCATATGCACAAGATATGTATGATATGC
Found at i:96880778 original size:31 final size:31
Alignment explanation
Indices: 96880743--96880806 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
96880733 CGTTTATAGT
*
96880743 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGGAATATGAAATATGA
**
96880774 AAAGGCTTCGGCCCAGGGTTATGAAATATGA
1 AAAGGCTTCGGCCCAGGAATATGAAATATGA
96880805 AA
1 AA
96880807 TATGAAATAT
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.38, C:0.16, G:0.25, T:0.22
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGGAATATGAAATATGA
Found at i:96880805 original size:7 final size:7
Alignment explanation
Indices: 96880793--96880817 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
96880783 GGCCCAGGGT
96880793 TATGAAA
1 TATGAAA
96880800 TATGAAA
1 TATGAAA
96880807 TATGAAA
1 TATGAAA
96880814 TATG
1 TATG
96880818 TAAAGGCTTC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.52, C:0.00, G:0.16, T:0.32
Consensus pattern (7 bp):
TATGAAA
Found at i:96888440 original size:20 final size:20
Alignment explanation
Indices: 96888415--96888501 Score: 140
Period size: 20 Copynumber: 4.3 Consensus size: 20
96888405 GTTTTGGTAT
96888415 ACATGAT-TGATATGATATGC
1 ACATGATATG-TATGATATGC
96888435 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
*
96888455 TCATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
*
96888475 ACATGATATGTATGATATGT
1 ACATGATATGTATGATATGC
96888495 ACATGAT
1 ACATGAT
96888502 GTATTCATAA
Statistics
Matches: 63, Mismatches: 3, Indels: 2
0.93 0.04 0.03
Matches are distributed among these distances:
20 61 0.97
21 2 0.03
ACGTcount: A:0.34, C:0.09, G:0.20, T:0.37
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:96888442 original size:11 final size:9
Alignment explanation
Indices: 96888426--96888493 Score: 55
Period size: 9 Copynumber: 6.9 Consensus size: 9
96888416 CATGATTGAT
96888426 ATGATATGCAC
1 ATGATATG--C
*
96888437 ATGATATGT
1 ATGATATGC
96888446 ATGATATGCTC
1 ATGATATG--C
*
96888457 ATGATATGT
1 ATGATATGC
96888466 ATGATATGCAC
1 ATGATATG--C
*
96888477 ATGATATGT
1 ATGATATGC
96888486 ATGATATG
1 ATGATATG
96888494 TACATGATGT
Statistics
Matches: 48, Mismatches: 5, Indels: 10
0.76 0.08 0.16
Matches are distributed among these distances:
9 24 0.50
11 24 0.50
ACGTcount: A:0.34, C:0.09, G:0.21, T:0.37
Consensus pattern (9 bp):
ATGATATGC
Found at i:96888449 original size:9 final size:9
Alignment explanation
Indices: 96888437--96888495 Score: 73
Period size: 9 Copynumber: 6.1 Consensus size: 9
96888427 TGATATGCAC
96888437 ATGATATGT
1 ATGATATGT
96888446 ATGATATGCT
1 ATGATATG-T
96888456 CATGATATGT
1 -ATGATATGT
*
96888466 ATGATATGCAC
1 ATGATATG--T
96888477 ATGATATGT
1 ATGATATGT
96888486 ATGATATGT
1 ATGATATGT
96888495 A
1 A
96888496 CATGATGTAT
Statistics
Matches: 44, Mismatches: 2, Indels: 8
0.81 0.04 0.15
Matches are distributed among these distances:
9 26 0.59
10 2 0.05
11 16 0.36
ACGTcount: A:0.34, C:0.07, G:0.20, T:0.39
Consensus pattern (9 bp):
ATGATATGT
Found at i:96888515 original size:40 final size:39
Alignment explanation
Indices: 96888429--96888515 Score: 115
Period size: 40 Copynumber: 2.2 Consensus size: 39
96888419 GATTGATATG
*
96888429 ATATGCACATGATATGTATGATATGCTCATGATATGTATG
1 ATATGCACATGATATGTATGATATGCTCATGA-ATGTATC
96888469 ATATGCACATGATATGTATGATATG-TACATG-ATGTATTC
1 ATATGCACATGATATGTATGATATGCT-CATGAATGTA-TC
96888508 ATAATGCA
1 AT-ATGCA
96888516 ATGGGTTGGG
Statistics
Matches: 43, Mismatches: 1, Indels: 6
0.86 0.02 0.12
Matches are distributed among these distances:
38 5 0.12
39 4 0.09
40 34 0.79
ACGTcount: A:0.34, C:0.10, G:0.18, T:0.37
Consensus pattern (39 bp):
ATATGCACATGATATGTATGATATGCTCATGAATGTATC
Found at i:96888606 original size:24 final size:24
Alignment explanation
Indices: 96888549--96888631 Score: 105
Period size: 25 Copynumber: 3.4 Consensus size: 24
96888539 AGGAAGTGCA
* *
96888549 AAAAGGGCTATGCCCCAGTTTACC
1 AAAAGGGCTTTGCCCCAGTTTATC
96888573 GAAAAGGGCTTTGCCCCAGTTTATC
1 -AAAAGGGCTTTGCCCCAGTTTATC
*
96888598 AAAAGGGCTTTTGCCCCAG-TTATT
1 AAAAGGGC-TTTGCCCCAGTTTATC
96888622 AAAAGAGGCT
1 AAAAG-GGCT
96888632 AGGCCTCCAG
Statistics
Matches: 53, Mismatches: 3, Indels: 5
0.87 0.05 0.08
Matches are distributed among these distances:
24 18 0.34
25 35 0.66
ACGTcount: A:0.29, C:0.23, G:0.23, T:0.25
Consensus pattern (24 bp):
AAAAGGGCTTTGCCCCAGTTTATC
Found at i:96891578 original size:7 final size:7
Alignment explanation
Indices: 96891566--96891591 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
96891556 GTTACTCCAC
96891566 AAGCCCA
1 AAGCCCA
96891573 AAGCCCA
1 AAGCCCA
96891580 AAGCCCA
1 AAGCCCA
96891587 AAGCC
1 AAGCC
96891592 TACATTAAAC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.42, C:0.42, G:0.15, T:0.00
Consensus pattern (7 bp):
AAGCCCA
Found at i:96903056 original size:20 final size:19
Alignment explanation
Indices: 96903014--96903057 Score: 52
Period size: 20 Copynumber: 2.3 Consensus size: 19
96903004 AGAAATAGAA
*
96903014 ATGAAATGTGAAATGGATC
1 ATGAAATGTGAAATGAATC
* *
96903033 ATGAAATGGTGAATTGAATT
1 ATGAAAT-GTGAAATGAATC
96903053 ATGAA
1 ATGAA
96903058 TATTAATTGA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
19 7 0.33
20 14 0.67
ACGTcount: A:0.43, C:0.02, G:0.25, T:0.30
Consensus pattern (19 bp):
ATGAAATGTGAAATGAATC
Found at i:96914839 original size:26 final size:26
Alignment explanation
Indices: 96914803--96914884 Score: 155
Period size: 26 Copynumber: 3.2 Consensus size: 26
96914793 TGAAATTCCA
96914803 ATCATGAAACATTTACCTAACCCATT
1 ATCATGAAACATTTACCTAACCCATT
96914829 ATCATGAAACATTTACCTAACCCATT
1 ATCATGAAACATTTACCTAACCCATT
*
96914855 ATCATGGAACATTTACCTAACCCATT
1 ATCATGAAACATTTACCTAACCCATT
96914881 ATCA
1 ATCA
96914885 ATTTGTATCA
Statistics
Matches: 55, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 55 1.00
ACGTcount: A:0.38, C:0.27, G:0.05, T:0.30
Consensus pattern (26 bp):
ATCATGAAACATTTACCTAACCCATT
Found at i:96920440 original size:43 final size:43
Alignment explanation
Indices: 96920379--96920464 Score: 163
Period size: 43 Copynumber: 2.0 Consensus size: 43
96920369 AACTGTAAAT
*
96920379 TTTCCACTTTTAAAGGTATTTCAGTAATTTATCTATTTTAGGG
1 TTTCCACTTTTAAAGGTATTTCAATAATTTATCTATTTTAGGG
96920422 TTTCCACTTTTAAAGGTATTTCAATAATTTATCTATTTTAGGG
1 TTTCCACTTTTAAAGGTATTTCAATAATTTATCTATTTTAGGG
96920465 GTTTTCATGC
Statistics
Matches: 42, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
43 42 1.00
ACGTcount: A:0.27, C:0.12, G:0.13, T:0.49
Consensus pattern (43 bp):
TTTCCACTTTTAAAGGTATTTCAATAATTTATCTATTTTAGGG
Found at i:96921737 original size:26 final size:26
Alignment explanation
Indices: 96921708--96921815 Score: 189
Period size: 26 Copynumber: 4.2 Consensus size: 26
96921698 TGAAATTCCA
*
96921708 ATCATGGAACATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAACCCATT
96921734 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
*
96921760 ATCATGAAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
*
96921786 ATCATGGAACATTTACCAAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
96921812 ATCA
1 ATCA
96921816 ATTTGTATCA
Statistics
Matches: 78, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 78 1.00
ACGTcount: A:0.37, C:0.26, G:0.06, T:0.31
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:96922215 original size:43 final size:42
Alignment explanation
Indices: 96922154--96922303 Score: 153
Period size: 43 Copynumber: 3.5 Consensus size: 42
96922144 ACAATGCCGA
* * *
96922154 TGTCCCGGACATGGTCTTACATGTAATTCAGTATCGATACCT
1 TGTCCCAGACATGGTCTTACACGTAATTCAGTATCGATGCCT
**
96922196 CTGTCCCAGACATGGTCTTACACAAAATT-AGGTA-CGATGCCT
1 -TGTCCCAGACATGGTCTTACACGTAATTCA-GTATCGATGCCT
* * *
96922238 TGTCCCAAACATGGTCTTACACGTAAATCTCA-AATCGAGGCCT
1 TGTCCCAGACATGGTCTTACACGT-AAT-TCAGTATCGATGCCT
*
96922281 ATGTCCCAGACACGGTCTTACAC
1 -TGTCCCAGACATGGTCTTACAC
96922304 AATATATCAG
Statistics
Matches: 89, Mismatches: 12, Indels: 11
0.79 0.11 0.10
Matches are distributed among these distances:
41 21 0.24
42 12 0.13
43 35 0.39
44 21 0.24
ACGTcount: A:0.27, C:0.27, G:0.18, T:0.27
Consensus pattern (42 bp):
TGTCCCAGACATGGTCTTACACGTAATTCAGTATCGATGCCT
Found at i:96928206 original size:68 final size:64
Alignment explanation
Indices: 96928089--96928341 Score: 201
Period size: 68 Copynumber: 3.9 Consensus size: 64
96928079 ATACAGATGG
* * * *
96928089 TATGTAGCTAGGTCACATGTATGGTGCTGA-GTGCACATCATGT-GTACAAGAGAGCTACAAGAC
1 TATGTAGCTAGGTCGCATGTGTGGTACT-ATGTGCACACCATGTAG-ACAAGAGAGCTAC--GAC
96928152 ATTA
62 A-TA
* * **
96928156 TGATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATA
1 T-ATGTAGCTAGGTCGCATGTGTGGTACTATGTGCACACCATGTAGACAAGAGAGCTACGACATA
* * * *
96928221 TATGTAGCTAGGTCGCATGTGTGGTTCTAGGTGAAGGACACCATGTAGACAAGAGAGCTACGAGA
1 TATGTAGCTAGGTCGCATGTGTGGTACTA--TG-TGCACACCATGTAGACAAGAGAGCTACGACA
96928286 TA
63 TA
* * * * * **
96928288 AACTG--GCTAGGTCACATGGGTGGTCCTAAGTGTTCACCATGT-GTACAAGAGAGC
1 TA-TGTAGCTAGGTCGCATGTGTGGTACTATGTGCACACCATGTAG-ACAAGAGAGC
96928342 CGAACTATAT
Statistics
Matches: 157, Mismatches: 21, Indels: 20
0.79 0.11 0.10
Matches are distributed among these distances:
62 1 0.01
63 19 0.12
64 27 0.17
65 3 0.02
66 24 0.15
67 33 0.21
68 49 0.31
69 1 0.01
ACGTcount: A:0.29, C:0.17, G:0.30, T:0.25
Consensus pattern (64 bp):
TATGTAGCTAGGTCGCATGTGTGGTACTATGTGCACACCATGTAGACAAGAGAGCTACGACATA
Found at i:96928239 original size:64 final size:64
Alignment explanation
Indices: 96928158--96928341 Score: 212
Period size: 67 Copynumber: 2.8 Consensus size: 64
96928148 AGACATTATG
* *
96928158 ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * *
96928222 ATGTAGCTAGGTCGCATGTGTGGTTCTAGGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTA--TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
96928287 AA
63 AA
* * * *
96928289 ACTG--GCTAGGTCACATGGGTGGTCCTAAGTGTTCACCATGT-GTACAAGAGAGC
1 A-TGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAG-ACAAGAGAGC
96928342 CGAACTATAT
Statistics
Matches: 102, Mismatches: 13, Indels: 11
0.81 0.10 0.09
Matches are distributed among these distances:
62 1 0.01
63 19 0.19
64 27 0.26
66 22 0.22
67 31 0.30
68 2 0.02
ACGTcount: A:0.28, C:0.17, G:0.31, T:0.24
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:96928280 original size:67 final size:64
Alignment explanation
Indices: 96928134--96928311 Score: 198
Period size: 67 Copynumber: 2.7 Consensus size: 64
96928124 CATCATGTGT
* * *
96928134 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATG
1 ACAAGAGAGCTAC--GAGA-TAT-ATGTAGCTAGGTCGCATGGGTGGTACTATGAGGACACCATG
96928199 TAG
62 TAG
* * *
96928202 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGTGTGGTTCTAGGTGAAGGACACCATGT
1 ACAAGAGAGCTACGAGATATATGTAGCTAGGTCGCATGGGTGGTACTA--TG-AGGACACCATGT
96928267 AG
63 AG
* *
96928269 ACAAGAGAGCTACGAGATAAACTG--GCTAGGTCACATGGGTGGT
1 ACAAGAGAGCTACGAGATATA-TGTAGCTAGGTCGCATGGGTGGT
96928312 CCTAAGTGTT
Statistics
Matches: 96, Mismatches: 10, Indels: 10
0.83 0.09 0.09
Matches are distributed among these distances:
64 26 0.27
65 3 0.03
66 21 0.22
67 31 0.32
68 15 0.16
ACGTcount: A:0.30, C:0.16, G:0.31, T:0.23
Consensus pattern (64 bp):
ACAAGAGAGCTACGAGATATATGTAGCTAGGTCGCATGGGTGGTACTATGAGGACACCATGTAG
Found at i:96936286 original size:22 final size:24
Alignment explanation
Indices: 96936250--96936293 Score: 65
Period size: 23 Copynumber: 1.9 Consensus size: 24
96936240 ACTTTGGGAA
96936250 GAAGAAGAACATGGA-AAAAAAGG
1 GAAGAAGAACATGGAGAAAAAAGG
*
96936273 GAAGAA-ATCATGGAGAAAAAA
1 GAAGAAGAACATGGAGAAAAAA
96936294 AGAAGAGAAG
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 7 0.37
23 12 0.63
ACGTcount: A:0.61, C:0.05, G:0.27, T:0.07
Consensus pattern (24 bp):
GAAGAAGAACATGGAGAAAAAAGG
Found at i:96936298 original size:22 final size:22
Alignment explanation
Indices: 96936248--96936299 Score: 61
Period size: 22 Copynumber: 2.3 Consensus size: 22
96936238 CAACTTTGGG
96936248 AAGAAGAAGAACATGGAAAAAA
1 AAGAAGAAGAACATGGAAAAAA
* *
96936270 AGGGAAGAA-ATCATGGAGAAAAA
1 A-AGAAGAAGAACATGGA-AAAAA
96936293 AAGAAGA
1 AAGAAGA
96936300 GAAGAGGTGA
Statistics
Matches: 25, Mismatches: 3, Indels: 4
0.78 0.09 0.12
Matches are distributed among these distances:
22 13 0.52
23 12 0.48
ACGTcount: A:0.63, C:0.04, G:0.27, T:0.06
Consensus pattern (22 bp):
AAGAAGAAGAACATGGAAAAAA
Found at i:96936302 original size:24 final size:22
Alignment explanation
Indices: 96936259--96936302 Score: 52
Period size: 23 Copynumber: 1.9 Consensus size: 22
96936249 AGAAGAAGAA
* *
96936259 CATGGAAAAAAAGGGAAGAAAT
1 CATGGAAAAAAAAGAAAGAAAT
96936281 CATGGAGAAAAAAAGAAGAGAA
1 CATGGA-AAAAAAAGAA-AGAA
96936303 GAGGTGACAT
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
22 6 0.33
23 8 0.44
24 4 0.22
ACGTcount: A:0.61, C:0.05, G:0.27, T:0.07
Consensus pattern (22 bp):
CATGGAAAAAAAAGAAAGAAAT
Found at i:96942226 original size:37 final size:37
Alignment explanation
Indices: 96942176--96942260 Score: 107
Period size: 37 Copynumber: 2.3 Consensus size: 37
96942166 ACCTTTAGCT
* * * *
96942176 CAGACGAAATCTCCACATGAATTTATCGGGTCTTACC
1 CAGACAAAATCTCCACACGAAGTCATCGGGTCTTACC
*
96942213 CAGACAAAATCTCCACACGTAGTCATCGGGTCTTACC
1 CAGACAAAATCTCCACACGAAGTCATCGGGTCTTACC
* *
96942250 CGGACATAATC
1 CAGACAAAATC
96942261 AGTGATAATT
Statistics
Matches: 41, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
37 41 1.00
ACGTcount: A:0.31, C:0.29, G:0.16, T:0.24
Consensus pattern (37 bp):
CAGACAAAATCTCCACACGAAGTCATCGGGTCTTACC
Found at i:96942279 original size:25 final size:26
Alignment explanation
Indices: 96942245--96942305 Score: 106
Period size: 25 Copynumber: 2.3 Consensus size: 26
96942235 TCATCGGGTC
96942245 TTACCCGGACATAATCAGTGATAA-T
1 TTACCCGGACATAATCAGTGATAATT
96942270 TTACCCGGACATAATCAGTGATAATT
1 TTACCCGGACATAATCAGTGATAATT
96942296 TTAACCCGGA
1 TT-ACCCGGA
96942306 TATAGTACTG
Statistics
Matches: 34, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
25 24 0.71
26 3 0.09
27 7 0.21
ACGTcount: A:0.34, C:0.21, G:0.16, T:0.28
Consensus pattern (26 bp):
TTACCCGGACATAATCAGTGATAATT
Found at i:96942462 original size:49 final size:49
Alignment explanation
Indices: 96942335--96942563 Score: 367
Period size: 49 Copynumber: 4.7 Consensus size: 49
96942325 CCCTTCGGGA
*
96942335 CTTATCACAT-T-TATACACTTTCACATCCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
96942382 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
96942429 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
96942478 CTTATCACACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTAT--CACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
96942529 CTTATCACACATATATACACTTTCACATTCATCAC
1 CTTATCACATATATATACACTTTCACATTCATCAC
96942564 GTAGAATCCT
Statistics
Matches: 170, Mismatches: 6, Indels: 10
0.91 0.03 0.05
Matches are distributed among these distances:
46 1 0.01
47 50 0.29
49 72 0.42
51 47 0.28
ACGTcount: A:0.30, C:0.30, G:0.07, T:0.33
Consensus pattern (49 bp):
CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:96942548 original size:100 final size:96
Alignment explanation
Indices: 96942340--96942563 Score: 358
Period size: 100 Copynumber: 2.3 Consensus size: 96
96942330 CGGGACTTAT
* *
96942340 CACATTTATACACTTTCACATCCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCA
1 CACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCA
*
96942405 CATTCATCACATCGGCTATTAGGCCTTATCA
66 CATTCATCACATCGGCCATTAGGCCTTATCA
*
96942436 CATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACACATATATATACACT
1 CACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTAT--CAC--ATATATACACT
* *
96942501 TTCACATTCATCACATTGGCCATTCGGCCTTATCA
62 TTCACATTCATCACATCGGCCATTAGGCCTTATCA
96942536 CACATATATACACTTTCACATTCATCAC
1 CACATATATACACTTTCACATTCATCAC
96942564 GTAGAATCCT
Statistics
Matches: 117, Mismatches: 7, Indels: 4
0.91 0.05 0.03
Matches are distributed among these distances:
96 44 0.38
98 3 0.03
100 70 0.60
ACGTcount: A:0.30, C:0.30, G:0.07, T:0.33
Consensus pattern (96 bp):
CACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCA
CATTCATCACATCGGCCATTAGGCCTTATCA
Found at i:96950587 original size:47 final size:47
Alignment explanation
Indices: 96950534--96950752 Score: 316
Period size: 49 Copynumber: 4.6 Consensus size: 47
96950524 TTAGGATTCT
* * *
96950534 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGTCCTAATGGTCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCG
* *
96950581 ATGTGATGAATGTCAAAGTGTATATATATGTGATAAGGCCGAATAGCCG
1 ATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCG
*
96950630 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCG
96950677 ATGTGATGAATGTGAAAGTGTATATATATATGTGATAAGG-C-AATGGCCG
1 ATGTGATGAATGTGAAAGTG----TATATATGTGATAAGGCCGAATGGCCG
96950726 ATGTGATGAATGTGAAAGTGTATATAT
1 ATGTGATGAATGTGAAAGTGTATATAT
96950753 NNNNNNNNNN
Statistics
Matches: 157, Mismatches: 9, Indels: 14
0.87 0.05 0.08
Matches are distributed among these distances:
45 7 0.04
47 64 0.41
49 69 0.44
50 1 0.01
51 16 0.10
ACGTcount: A:0.34, C:0.07, G:0.28, T:0.31
Consensus pattern (47 bp):
ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCG
Found at i:96950632 original size:49 final size:49
Alignment explanation
Indices: 96950534--96950752 Score: 324
Period size: 47 Copynumber: 4.6 Consensus size: 49
96950524 TTAGGATTCT
* * *
96950534 ATGTGATGAATGTGAAAGTG--TATATATGTGATAAGTCCTAATGGTCG
1 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCG
* *
96950581 ATGTGATGAATGTCAAAGTGTATATATATGTGATAAGGCCGAATAGCCG
1 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCG
*
96950630 ATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCG
96950677 ATGTGATGAATGTGAAAGTGTATATATATATGTGATAAGG-C-AATGGCCG
1 ATGTGATGAATGTGAAAGTG--TATATATATGTGATAAGGCCGAATGGCCG
96950726 ATGTGATGAATGTGAAAGTGTATATAT
1 ATGTGATGAATGTGAAAGTGTATATAT
96950753 NNNNNNNNNN
Statistics
Matches: 157, Mismatches: 9, Indels: 12
0.88 0.05 0.07
Matches are distributed among these distances:
47 71 0.45
49 69 0.44
50 1 0.01
51 16 0.10
ACGTcount: A:0.34, C:0.07, G:0.28, T:0.31
Consensus pattern (49 bp):
ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCG
Found at i:96950635 original size:96 final size:95
Alignment explanation
Indices: 96950534--96950752 Score: 350
Period size: 96 Copynumber: 2.3 Consensus size: 95
96950524 TTAGGATTCT
* * * *
96950534 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGTCCTAATGGTCGATGTGATGAATGTCAAAG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTCAAAG
96950599 TG-TATATATATGTGATAAGGCCGAATAGCCG
66 TGATATATATATGTGATAAGG-C-AATAGCCG
*
96950630 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTCAAAG
*
96950695 TGTATATATATATGTGATAAGGCAATGGCCG
66 TG-ATATATATATGTGATAAGGCAATAGCCG
96950726 ATGTGATGAATGTGAAAGTGTATATAT
1 ATGTGATGAATGTGAAAGTGTATATAT
96950753 NNNNNNNNNN
Statistics
Matches: 115, Mismatches: 6, Indels: 4
0.92 0.05 0.03
Matches are distributed among these distances:
96 96 0.83
97 1 0.01
98 18 0.16
ACGTcount: A:0.34, C:0.07, G:0.28, T:0.31
Consensus pattern (95 bp):
ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTCAAAG
TGATATATATATGTGATAAGGCAATAGCCG
Found at i:96952795 original size:40 final size:39
Alignment explanation
Indices: 96952736--96952887 Score: 169
Period size: 40 Copynumber: 3.8 Consensus size: 39
96952726 GAGAATTGAG
*
96952736 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
1 AGTGATATATCC-GGCTAAGTCCCGAAGAGCATTCGTGCT
* *
96952776 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGG-CTAAGTCCCGAAGAGCATTCGTGCT
* **
96952816 AGTGATATATCCATGCTAAACCCCGAAGAGCATTCGTGCT
1 AGTGATATATCC-GGCTAAGTCCCGAAGAGCATTCGTGCT
* * ** *
96952856 GGTGTTATATCCGGGCTTGGTCTCGAAGAGCA
1 AGTGATATATCC-GGCTAAGTCCCGAAGAGCA
96952888 ATCATGCTGG
Statistics
Matches: 93, Mismatches: 17, Indels: 4
0.82 0.15 0.04
Matches are distributed among these distances:
39 2 0.02
40 90 0.97
41 1 0.01
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (39 bp):
AGTGATATATCCGGCTAAGTCCCGAAGAGCATTCGTGCT
Found at i:96954202 original size:18 final size:18
Alignment explanation
Indices: 96954179--96954220 Score: 84
Period size: 18 Copynumber: 2.3 Consensus size: 18
96954169 AATGAATTGT
96954179 ATTAAATTGCTTGATGTG
1 ATTAAATTGCTTGATGTG
96954197 ATTAAATTGCTTGATGTG
1 ATTAAATTGCTTGATGTG
96954215 ATTAAA
1 ATTAAA
96954221 AATGCATATG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.33, C:0.05, G:0.19, T:0.43
Consensus pattern (18 bp):
ATTAAATTGCTTGATGTG
Found at i:96955412 original size:47 final size:47
Alignment explanation
Indices: 96955359--96955766 Score: 726
Period size: 47 Copynumber: 8.7 Consensus size: 47
96955349 TTAGGATTCT
96955359 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
96955406 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* *
96955453 ATGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATAGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
96955500 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
96955547 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
96955594 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
96955641 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* * * * *
96955688 ATGTGATGAATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCA
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* * *
96955735 ACGTGATGGATGTGAAAGTGTATAAATGTGAT
1 ATGTGATGAATGTGAAAGTGTATATATGTGAT
96955767 TAGTCCCGAA
Statistics
Matches: 348, Mismatches: 13, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
47 348 1.00
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.29
Consensus pattern (47 bp):
ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
Found at i:96955944 original size:37 final size:37
Alignment explanation
Indices: 96955888--96955966 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
96955878 CCGAGCTCTA
* * *
96955888 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
96955925 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
96955962 AAGAC
1 AAGAC
96955967 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:96962039 original size:39 final size:39
Alignment explanation
Indices: 96961987--96962114 Score: 202
Period size: 39 Copynumber: 3.3 Consensus size: 39
96961977 TTTGAGATTG
96961987 AAAATATCCGGACATGAGGTCCGCAGGCTATATGCTAGA
1 AAAATATCCGGACATGAGGTCCGCAGGCTATATGCTAGA
* *
96962026 AAAATATCTGGACATGAGATCCGCAGGCTATATGCTAGA
1 AAAATATCCGGACATGAGGTCCGCAGGCTATATGCTAGA
* * * *
96962065 AATATATCCGGACTTGAGGTCCGCAGGCTACATGCTGGA
1 AAAATATCCGGACATGAGGTCCGCAGGCTATATGCTAGA
96962104 AAAATATCCGG
1 AAAATATCCGG
96962115 GTTAAAGACC
Statistics
Matches: 80, Mismatches: 9, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
39 80 1.00
ACGTcount: A:0.33, C:0.20, G:0.25, T:0.22
Consensus pattern (39 bp):
AAAATATCCGGACATGAGGTCCGCAGGCTATATGCTAGA
Found at i:96962128 original size:78 final size:77
Alignment explanation
Indices: 96961986--96962132 Score: 197
Period size: 78 Copynumber: 1.9 Consensus size: 77
96961976 GTTTGAGATT
* * * *
96961986 GAAAATATCCGGACATGAGGTCCGCAGGCTATATGCTAGAAAAATATCTGGACATGAGATCCGCA
1 GAAAATATCCGGACATGAGGTCCGCAGGCTACATGCTAGAAAAATATCGGGACATAAGACCCGCA
96962051 GGCTATATGCTA
66 GGCTATATGCTA
* * **
96962063 GAAATATATCCGGACTTGAGGTCCGCAGGCTACATGCTGGAAAAATATCCGGGTTA-AAGACCCG
1 GAAA-ATATCCGGACATGAGGTCCGCAGGCTACATGCTAGAAAAATAT-CGGGACATAAGACCCG
96962127 CAGGCT
64 CAGGCT
96962133 TACACTAGTA
Statistics
Matches: 60, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
77 4 0.07
78 52 0.87
79 4 0.07
ACGTcount: A:0.32, C:0.21, G:0.26, T:0.21
Consensus pattern (77 bp):
GAAAATATCCGGACATGAGGTCCGCAGGCTACATGCTAGAAAAATATCGGGACATAAGACCCGCA
GGCTATATGCTA
Found at i:96965811 original size:27 final size:27
Alignment explanation
Indices: 96965781--96966028 Score: 313
Period size: 27 Copynumber: 9.2 Consensus size: 27
96965771 AAAGTACTCC
96965781 CGATTTACAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* * *
96965808 CGATTTACAGAACTACAGCTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
**
96965835 C-AGTTTACAGAATTACTATTTTACCCT
1 CGA-TTTACAGAATTACCGTTTTACCCT
96965862 CGATTTACAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
*
96965889 C-AGTTTACAGAATTACTGTTTTACCCT
1 CGA-TTTACAGAATTACCGTTTTACCCT
96965916 CGATTTACAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* * * *
96965943 TGATTTACAAAATTACTGGTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* * *
96965970 C-AGTTTACAAAATTATCGTTTTACCCC
1 CGA-TTTACAGAATTACCGTTTTACCCT
*
96965997 CGATTTACAGAATTACCATTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
*
96966024 TGATT
1 CGATT
96966029 GTGAAATTAC
Statistics
Matches: 190, Mismatches: 25, Indels: 12
0.84 0.11 0.05
Matches are distributed among these distances:
26 3 0.02
27 184 0.97
28 3 0.02
ACGTcount: A:0.28, C:0.24, G:0.10, T:0.38
Consensus pattern (27 bp):
CGATTTACAGAATTACCGTTTTACCCT
Found at i:96966063 original size:27 final size:27
Alignment explanation
Indices: 96966033--96966228 Score: 223
Period size: 27 Copynumber: 7.3 Consensus size: 27
96966023 TTGATTGTGA
*
96966033 AATTACTGAAATACCCCTGTAGGGTAG
1 AATTACTGAAATACCCTTGTAGGGTAG
* * *
96966060 AATTTCCGAAATACCCTTATAGGGTAG
1 AATTACTGAAATACCCTTGTAGGGTAG
* *
96966087 AATTACTGAAATACCCTTATAGGATAG
1 AATTACTGAAATACCCTTGTAGGGTAG
** * * *
96966114 AATTACCAAAACACCCCTATAGGGTAG
1 AATTACTGAAATACCCTTGTAGGGTAG
96966141 AATTA-TCGAAATACCCTTGTAGGGTAG
1 AATTACT-GAAATACCCTTGTAGGGTAG
* *
96966168 AAATACTGAAATACCCCTGTAGGGTAG
1 AATTACTGAAATACCCTTGTAGGGTAG
* * * *
96966195 AATTACCGAGATACCCTTGTGGGGTAA
1 AATTACTGAAATACCCTTGTAGGGTAG
96966222 AATTACT
1 AATTACT
96966229 ATTTTGCCCC
Statistics
Matches: 141, Mismatches: 26, Indels: 4
0.82 0.15 0.02
Matches are distributed among these distances:
27 140 0.99
28 1 0.01
ACGTcount: A:0.36, C:0.18, G:0.19, T:0.27
Consensus pattern (27 bp):
AATTACTGAAATACCCTTGTAGGGTAG
Found at i:96966102 original size:54 final size:54
Alignment explanation
Indices: 96966033--96966227 Score: 248
Period size: 54 Copynumber: 3.6 Consensus size: 54
96966023 TTGATTGTGA
* * *
96966033 AATTACTGAAATACCCCTGTAGGGTAGAATTTCCGAAATACCCTTATAGGGTAG
1 AATTACTGAAATACCCTTGTAGGGTAGAATTACCGAAATACCCCTATAGGGTAG
* * * *
96966087 AATTACTGAAATACCCTTATAGGATAGAATTACCAAAACACCCCTATAGGGTAG
1 AATTACTGAAATACCCTTGTAGGGTAGAATTACCGAAATACCCCTATAGGGTAG
* * *
96966141 AATTA-TCGAAATACCCTTGTAGGGTAGAAATACTGAAATACCCCTGTAGGGTAG
1 AATTACT-GAAATACCCTTGTAGGGTAGAATTACCGAAATACCCCTATAGGGTAG
* * * *
96966195 AATTACCGAGATACCCTTGTGGGGTAAAATTAC
1 AATTACTGAAATACCCTTGTAGGGTAGAATTAC
96966228 TATTTTGCCC
Statistics
Matches: 120, Mismatches: 19, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
53 1 0.01
54 119 0.99
ACGTcount: A:0.36, C:0.18, G:0.19, T:0.26
Consensus pattern (54 bp):
AATTACTGAAATACCCTTGTAGGGTAGAATTACCGAAATACCCCTATAGGGTAG
Found at i:96966220 original size:81 final size:82
Alignment explanation
Indices: 96966033--96966226 Score: 257
Period size: 81 Copynumber: 2.4 Consensus size: 82
96966023 TTGATTGTGA
* *
96966033 AATTACTGAAATACCCCTGTAGGGTAGAATT-TCCGAAATACCCTTATAGGGTAGAATTACTGAA
1 AATTACCGAAATACCCCTGTAGGGTAGAATTATCCGAAATACCCTTATAGGGTAGAAATACTGAA
*
96966097 ATACCCTTATAGGATAG
66 ATACCCCTATAGGATAG
* * * *
96966114 AATTACCAAAACACCCCTATAGGGTAGAATTAT-CGAAATACCCTTGTAGGGTAGAAATACTGAA
1 AATTACCGAAATACCCCTGTAGGGTAGAATTATCCGAAATACCCTTATAGGGTAGAAATACTGAA
* *
96966178 ATACCCCTGTAGGGTAG
66 ATACCCCTATAGGATAG
* * * *
96966195 AATTACCGAGATACCCTTGTGGGGTAAAATTA
1 AATTACCGAAATACCCCTGTAGGGTAGAATTA
96966227 CTATTTTGCC
Statistics
Matches: 96, Mismatches: 16, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
81 95 0.99
82 1 0.01
ACGTcount: A:0.36, C:0.18, G:0.20, T:0.26
Consensus pattern (82 bp):
AATTACCGAAATACCCCTGTAGGGTAGAATTATCCGAAATACCCTTATAGGGTAGAAATACTGAA
ATACCCCTATAGGATAG
Found at i:96966488 original size:27 final size:26
Alignment explanation
Indices: 96966427--96966509 Score: 103
Period size: 27 Copynumber: 3.1 Consensus size: 26
96966417 CGGAAGAAGC
* *
96966427 GTTCTGGTGGCTATGCCACAAATAACT
1 GTTCTGGTGGCTCTGCCAC-AATATCT
96966454 GTTCTGGTGGCTCTGCCACAATATCT
1 GTTCTGGTGGCTCTGCCACAATATCT
* * *
96966480 GTATTTGGTGACTCTGTCACAATATCT
1 GT-TCTGGTGGCTCTGCCACAATATCT
96966507 GTT
1 GTT
96966510 GACCGATCGA
Statistics
Matches: 50, Mismatches: 5, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
26 9 0.18
27 41 0.82
ACGTcount: A:0.20, C:0.22, G:0.22, T:0.36
Consensus pattern (26 bp):
GTTCTGGTGGCTCTGCCACAATATCT
Found at i:96966631 original size:22 final size:22
Alignment explanation
Indices: 96966597--96966655 Score: 55
Period size: 22 Copynumber: 2.7 Consensus size: 22
96966587 CCCGTTATTA
* *
96966597 ATGGCTCTATGCCAACCTAAAT
1 ATGGCTTTGTGCCAACCTAAAT
* * * *
96966619 ATGGCTTTGTGCCATCTTGACT
1 ATGGCTTTGTGCCAACCTAAAT
*
96966641 ATGGCTTCGTGCCAA
1 ATGGCTTTGTGCCAA
96966656 ACGTATTTAC
Statistics
Matches: 29, Mismatches: 8, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
22 29 1.00
ACGTcount: A:0.22, C:0.25, G:0.20, T:0.32
Consensus pattern (22 bp):
ATGGCTTTGTGCCAACCTAAAT
Found at i:96966842 original size:27 final size:27
Alignment explanation
Indices: 96966828--96966893 Score: 82
Period size: 27 Copynumber: 2.5 Consensus size: 27
96966818 TTTGCTACAT
96966828 TATCTG-ATTCTGGTGGCTCTGCCACAA
1 TATCTGTA-TCTGGTGGCTCTGCCACAA
* * *
96966855 TATCTGTATCTGGTGACTCTGTCACGA
1 TATCTGTATCTGGTGGCTCTGCCACAA
96966882 TATCTGT-TCTGG
1 TATCTGTATCTGG
96966894 CAGCCATGCT
Statistics
Matches: 35, Mismatches: 3, Indels: 3
0.85 0.07 0.07
Matches are distributed among these distances:
26 5 0.14
27 29 0.83
28 1 0.03
ACGTcount: A:0.17, C:0.23, G:0.23, T:0.38
Consensus pattern (27 bp):
TATCTGTATCTGGTGGCTCTGCCACAA
Found at i:96967026 original size:6 final size:6
Alignment explanation
Indices: 96967017--96967191 Score: 130
Period size: 6 Copynumber: 28.8 Consensus size: 6
96967007 TCACATTCAC
* * * *
96967017 ATTCTG ATTCTG ATTCTG -TCACGTA ATTCTG ATTCTG -TTACTA ATACTG
1 ATTCTG ATTCTG ATTCTG AT-TC-TG ATTCTG ATTCTG ATT-CTG ATTCTG
* * * *
96967066 ATTCTG ATTCTA ATTATG -TTACTG ATTCTG ATTCTG -TCACCTA ATTCTG
1 ATTCTG ATTCTG ATTCTG ATT-CTG ATTCTG ATTCTG AT--TCTG ATTCTG
* *
96967115 ATTCTG ATTCTG ATTCTG ATTTTG -TTACTA ATAT-TG ATTCTG ATTCTG
1 ATTCTG ATTCTG ATTCTG ATTCTG ATT-CTG AT-TCTG ATTCTG ATTCTG
96967163 ATTCTG -TTACTG ATTCTG ATTCTG ATTCT
1 ATTCTG ATT-CTG ATTCTG ATTCTG ATTCT
96967192 CATTTTGGTT
Statistics
Matches: 133, Mismatches: 20, Indels: 32
0.72 0.11 0.17
Matches are distributed among these distances:
5 11 0.08
6 109 0.82
7 10 0.08
8 3 0.02
ACGTcount: A:0.21, C:0.17, G:0.14, T:0.49
Consensus pattern (6 bp):
ATTCTG
Found at i:96967110 original size:49 final size:49
Alignment explanation
Indices: 96967017--96967125 Score: 148
Period size: 49 Copynumber: 2.2 Consensus size: 49
96967007 TCACATTCAC
* * *
96967017 ATTCTGATTCTGATTCTGTCACGTAATTCTGATTCTGTTACTAATACTG
1 ATTCTGATTCTAATTATGTCACGTAATTCTGATTCTGTCACTAATACTG
* * *
96967066 ATTCTGATTCTAATTATGTTAC-TGATTCTGATTCTGTCACCTAATTCTG
1 ATTCTGATTCTAATTATGTCACGTAATTCTGATTCTGTCA-CTAATACTG
96967115 ATTCTGATTCT
1 ATTCTGATTCT
96967126 GATTCTGATT
Statistics
Matches: 53, Mismatches: 6, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
48 15 0.28
49 38 0.72
ACGTcount: A:0.22, C:0.18, G:0.13, T:0.47
Consensus pattern (49 bp):
ATTCTGATTCTAATTATGTCACGTAATTCTGATTCTGTCACTAATACTG
Found at i:96967134 original size:67 final size:67
Alignment explanation
Indices: 96967017--96967191 Score: 225
Period size: 67 Copynumber: 2.6 Consensus size: 67
96967007 TCACATTCAC
*
96967017 ATTCTGATTCTGATTCTGTCACGTAATTCTGATTCTG-TTACTAATACTGATTCTGATT-CTAAT
1 ATTCTGATTCTGATTCTGTCACCTAATTCTGATTCTGATT-CTAATACTGATTCTG-TTACTAAT
96967080 -TATG
64 AT-TG
* * *
96967084 -TTACTGATTCTGATTCTGTCACCTAATTCTGATTCTGATTCTGATTCTGATTTTGTTACTAATA
1 ATT-CTGATTCTGATTCTGTCACCTAATTCTGATTCTGATTCTAATACTGATTCTGTTACTAATA
96967148 TTG
65 TTG
* *
96967151 ATTCTGATTCTGATTCTGTTA-CTGATTCTGATTCTGATTCT
1 ATTCTGATTCTGATTCTGTCACCTAATTCTGATTCTGATTCT
96967192 CATTTTGGTT
Statistics
Matches: 97, Mismatches: 6, Indels: 11
0.85 0.05 0.10
Matches are distributed among these distances:
66 23 0.24
67 69 0.71
68 5 0.05
ACGTcount: A:0.21, C:0.17, G:0.14, T:0.49
Consensus pattern (67 bp):
ATTCTGATTCTGATTCTGTCACCTAATTCTGATTCTGATTCTAATACTGATTCTGTTACTAATAT
TG
Found at i:96967209 original size:30 final size:30
Alignment explanation
Indices: 96967042--96967212 Score: 149
Period size: 30 Copynumber: 5.9 Consensus size: 30
96967032 CTGTCACGTA
* *
96967042 ATTCTGATTCTGTTACTAATACTGATTCTG
1 ATTCTGATTTTGTTACTAATTCTGATTCTG
* * *
96967072 ATTCTAATTATGTTACTGATTCTGATTCTG
1 ATTCTGATTTTGTTACTAATTCTGATTCTG
** ** *
96967102 --TC--ACCTAATT-CTGATTCTGATTCTG
1 ATTCTGATTTTGTTACTAATTCTGATTCTG
96967127 ATTCTGATTTTGTTACTAATAT-TGATTCTG
1 ATTCTGATTTTGTTACTAAT-TCTGATTCTG
* *
96967157 ATTCTGATTCTGTTACTGATTCTGATTCTG
1 ATTCTGATTTTGTTACTAATTCTGATTCTG
* *
96967187 ATTCTCATTTTGGTT-CCAATTCTGAT
1 ATTCTGATTTT-GTTACTAATTCTGAT
96967213 AATGTTTCTT
Statistics
Matches: 113, Mismatches: 20, Indels: 16
0.76 0.13 0.11
Matches are distributed among these distances:
25 15 0.13
26 3 0.03
27 2 0.02
28 2 0.02
29 5 0.04
30 82 0.73
31 4 0.04
ACGTcount: A:0.21, C:0.16, G:0.13, T:0.49
Consensus pattern (30 bp):
ATTCTGATTTTGTTACTAATTCTGATTCTG
Found at i:96982775 original size:38 final size:38
Alignment explanation
Indices: 96982732--96982804 Score: 110
Period size: 38 Copynumber: 1.9 Consensus size: 38
96982722 TTTCAAATTA
* *
96982732 ACATGTATAACTGTGGCATATCCACTTAGCACCACGTT
1 ACATGTATAACCGTGGCATAGCCACTTAGCACCACGTT
* *
96982770 ACATGTTTAACCGTGGTATAGCCACTTAGCACCAC
1 ACATGTATAACCGTGGCATAGCCACTTAGCACCAC
96982805 TGTAACGCCC
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
38 31 1.00
ACGTcount: A:0.29, C:0.27, G:0.16, T:0.27
Consensus pattern (38 bp):
ACATGTATAACCGTGGCATAGCCACTTAGCACCACGTT
Found at i:96984224 original size:40 final size:40
Alignment explanation
Indices: 96984166--96984293 Score: 213
Period size: 40 Copynumber: 3.2 Consensus size: 40
96984156 TCTTTGGGAT
* *
96984166 TTAG-CCGGATATAACAACTCGTACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAGCAACTCGCACAAATGCCTTCGGGTC
* *
96984205 CTAGCCCGGATACAGCAACTCGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAGCAACTCGCACAAATGCCTTCGGGTC
96984245 TTAGCCCGGATATAGCAACTCGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAGCAACTCGCACAAATGCCTTCGGGTC
96984285 TTAGCCCGG
1 TTAGCCCGG
96984294 TTATCATCCG
Statistics
Matches: 82, Mismatches: 6, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
39 3 0.04
40 79 0.96
ACGTcount: A:0.25, C:0.30, G:0.23, T:0.22
Consensus pattern (40 bp):
TTAGCCCGGATATAGCAACTCGCACAAATGCCTTCGGGTC
Found at i:96986220 original size:38 final size:40
Alignment explanation
Indices: 96986164--96986369 Score: 177
Period size: 38 Copynumber: 4.9 Consensus size: 40
96986154 TGAATCAATA
*
96986164 TATGTAACCGTGGCATATCCACTTAGCACCACGTTACATG
1 TATGTAACCGTGGTATATCCACTTAGCACCACGTTACATG
* *
96986204 T-T-TAACCGTGGTATATCCACTTAGCACTACGTTAATGAATCAATA
1 TATGTAACCGTGGTATATCCACTTAGCACCACG-T--T--A-C-ATG
*
96986249 TATGTAACCGTGGCATATCCACTTAGCACCACGTTACATG
1 TATGTAACCGTGGTATATCCACTTAGCACCACGTTACATG
** *
96986289 TATCAATATGTGTAATTGTGGTATATCCACTTAGCACCACGTTACACG
1 ------TA--TGTAACCGTGGTATATCCACTTAGCACCACGTTACATG
*
96986337 TA--TAACCGTGGTATATCCACTTAACACCACGTT
1 TATGTAACCGTGGTATATCCACTTAGCACCACGTT
96986370 TCTTCATTCC
Statistics
Matches: 136, Mismatches: 13, Indels: 36
0.74 0.07 0.19
Matches are distributed among these distances:
38 55 0.40
39 2 0.01
40 3 0.02
41 2 0.01
42 3 0.02
43 1 0.01
44 2 0.01
45 3 0.02
46 4 0.03
47 27 0.20
48 34 0.25
ACGTcount: A:0.30, C:0.24, G:0.16, T:0.31
Consensus pattern (40 bp):
TATGTAACCGTGGTATATCCACTTAGCACCACGTTACATG
Found at i:96986315 original size:48 final size:48
Alignment explanation
Indices: 96986206--96986339 Score: 198
Period size: 48 Copynumber: 2.8 Consensus size: 48
96986196 GTTACATGTT
* *
96986206 TAACCGTGGTATATCCACTTAGCACTACGTTA-ATGAATCAATATATG
1 TAACCGTGGTATATCCACTTAGCACCACGTTACATGTATCAATATATG
* *
96986253 TAACCGTGGCATATCCACTTAGCACCACGTTACATGTATCAATATGTG
1 TAACCGTGGTATATCCACTTAGCACCACGTTACATGTATCAATATATG
** *
96986301 TAATTGTGGTATATCCACTTAGCACCACGTTACACGTAT
1 TAACCGTGGTATATCCACTTAGCACCACGTTACATGTAT
96986340 AACCGTGGTA
Statistics
Matches: 78, Mismatches: 8, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
47 30 0.38
48 48 0.62
ACGTcount: A:0.31, C:0.22, G:0.16, T:0.31
Consensus pattern (48 bp):
TAACCGTGGTATATCCACTTAGCACCACGTTACATGTATCAATATATG
Found at i:96988000 original size:15 final size:16
Alignment explanation
Indices: 96987976--96988006 Score: 55
Period size: 15 Copynumber: 2.0 Consensus size: 16
96987966 AGTCATAATC
96987976 ATTTTGGTCAAATAAA
1 ATTTTGGTCAAATAAA
96987992 ATTTT-GTCAAATAAA
1 ATTTTGGTCAAATAAA
96988007 GAAGCCATCC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 10 0.67
16 5 0.33
ACGTcount: A:0.45, C:0.06, G:0.10, T:0.39
Consensus pattern (16 bp):
ATTTTGGTCAAATAAA
Found at i:96990774 original size:25 final size:24
Alignment explanation
Indices: 96990720--96990791 Score: 74
Period size: 25 Copynumber: 2.9 Consensus size: 24
96990710 GGTTACTGAT
* *
96990720 TTCAGCTCTTATGAGCTTATCGATA
1 TTCAGCTCGTATGAGCTTA-CCATA
*
96990745 CTCAGCTCGTATGAGCTTACCATTA
1 TTCAGCTCGTATGAGCTTACCA-TA
*
96990770 TTCAGCTCAG-AGGAGCTTACCA
1 TTCAGCTC-GTATGAGCTTACCA
96990792 GTTTACAACT
Statistics
Matches: 40, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
24 2 0.05
25 37 0.93
26 1 0.03
ACGTcount: A:0.25, C:0.25, G:0.18, T:0.32
Consensus pattern (24 bp):
TTCAGCTCGTATGAGCTTACCATA
Found at i:97005344 original size:40 final size:39
Alignment explanation
Indices: 97005246--97005468 Score: 207
Period size: 40 Copynumber: 5.6 Consensus size: 39
97005236 TCCTCGTTCA
* * *** * *
97005246 AATGCCTTCGGGACATAGCCCGGATTTCGTAACTCACAC
1 AATGCCTTCGGGACTTAACCCGGATTTAACAATTCGCAC
*
97005285 AATGCCTTCGGGACATAACCCGGATTTAACAATTCGCAC
1 AATGCCTTCGGGACTTAACCCGGATTTAACAATTCGCAC
*
97005324 GAATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCAC
1 -AATGCCTTCGGGACTTAACCCGGATTTAACAATTCGCAC
**
97005364 GAATGCCTTCGGGACTTAACCCGGATTT-AGTATCTCGCAC
1 -AATGCCTTCGGGACTTAACCCGGATTTAACAAT-TCGCAC
* * * * * *
97005404 AAAGGCCTTC-GGATCTTAATCCGGATATATTCACTTAGCAC
1 -AATGCCTTCGGGA-CTTAACCCGGATTTA-ACAATTCGCAC
* *
97005445 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
97005469 CAGCATTCAA
Statistics
Matches: 155, Mismatches: 23, Indels: 11
0.82 0.12 0.06
Matches are distributed among these distances:
39 38 0.25
40 108 0.70
41 8 0.05
42 1 0.01
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (39 bp):
AATGCCTTCGGGACTTAACCCGGATTTAACAATTCGCAC
Found at i:97005347 original size:79 final size:80
Alignment explanation
Indices: 97005246--97005392 Score: 224
Period size: 79 Copynumber: 1.9 Consensus size: 80
97005236 TCCTCGTTCA
* ***
97005246 AATGCCTTCGGGACATAGCCCGGATTTCGTAACTCACAC-AATGCCTTCGGGACATAACCCGGAT
1 AATGCCTTCGGGACATAACCCGGATTTAACAACTCACACGAATGCCTTCGGGACATAACCCGGAT
97005310 TTAACAATTCGCACG
66 TTAACAATTCGCACG
* * *
97005325 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACGAATGCCTTCGGGACTTAACCCGGAT
1 AATGCCTTCGGGACATAACCCGGATTTAACAACTCACACGAATGCCTTCGGGACATAACCCGGAT
97005390 TTA
66 TTA
97005393 GTATCTCGCA
Statistics
Matches: 60, Mismatches: 7, Indels: 1
0.88 0.10 0.01
Matches are distributed among these distances:
79 33 0.55
80 27 0.45
ACGTcount: A:0.27, C:0.29, G:0.20, T:0.24
Consensus pattern (80 bp):
AATGCCTTCGGGACATAACCCGGATTTAACAACTCACACGAATGCCTTCGGGACATAACCCGGAT
TTAACAATTCGCACG
Done.