Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr3
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 100348136
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 3062571 characters in sequence are not A, C, G, or T
File 281 of 290
Found at i:97005402 original size:80 final size:79
Alignment explanation
Indices: 97005244--97005468 Score: 231
Period size: 80 Copynumber: 2.8 Consensus size: 79
97005234 GCTCCTCGTT
* * *** * *
97005244 CAAATGCCTTCGGGACATAGCCCGGATTTCGTAACTCACACAATGCCTTCGGGACATAACCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACAATGCCTTCGGGACTTAACCCGGA
97005309 TTTAACAATTCGCA
66 TTTAACAATTCGCA
*
97005323 CGAATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACGAATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCAC-AATGCCTTCGGGACTTAACCCGG
**
97005388 ATTT-AGTATCTCGCA
65 ATTTAACAAT-TCGCA
* * * * * * *
97005403 CAAAGGCCTTC-GGATCTTAATCCGGATATATTC-ACTTAGCACAAAGCCTTCGGGACTTAGCCC
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTA-ACAAC-TCGCACAATGCCTTCGGGACTTAACCC
97005466 GGA
63 GGA
97005469 CAGCATTCAA
Statistics
Matches: 123, Mismatches: 18, Indels: 9
0.82 0.12 0.06
Matches are distributed among these distances:
79 40 0.33
80 77 0.63
81 6 0.05
ACGTcount: A:0.27, C:0.28, G:0.20, T:0.24
Consensus pattern (79 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACAATGCCTTCGGGACTTAACCCGGA
TTTAACAATTCGCA
Found at i:97005468 original size:120 final size:119
Alignment explanation
Indices: 97005246--97005468 Score: 279
Period size: 120 Copynumber: 1.9 Consensus size: 119
97005236 TCCTCGTTCA
* * * *
97005246 AATGCCTTCGGGACATAGCCCGGATTTCGTAACTCACACAATGCCTTCGGGACATAACCCGGATT
1 AATGCCTTCGGGACATAACCCGGATTTAGTAACTCACACAAGGCCTTCGGGACATAACCCGGATA
* *
97005311 TAACAATTCGCACGAATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
66 TAACAATTAGCACGAAAGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
* * * * *
97005365 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACAAAGGCCTTC-GGATCTTAATCCGGA
1 AATGCCTTCGGGACATAACCCGGATTTAGTAACTCACAC-AAGGCCTTCGGGA-CATAACCCGGA
* * *
97005429 TATATTCACTTAGCAC-AAAGCCTTCGGGACTTAGCCCGGA
64 TATA-ACAATTAGCACGAAAGCCTTCGGGACTTAACCCGGA
97005469 CAGCATTCAA
Statistics
Matches: 87, Mismatches: 14, Indels: 5
0.82 0.13 0.05
Matches are distributed among these distances:
119 37 0.43
120 42 0.48
121 8 0.09
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (119 bp):
AATGCCTTCGGGACATAACCCGGATTTAGTAACTCACACAAGGCCTTCGGGACATAACCCGGATA
TAACAATTAGCACGAAAGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
Found at i:97013161 original size:27 final size:27
Alignment explanation
Indices: 97013131--97013308 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
97013121 ATATTGAGTC
* * * *
97013131 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
97013158 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
97013185 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
97013213 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
97013240 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
97013267 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
97013294 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
97013309 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:97013270 original size:82 final size:81
Alignment explanation
Indices: 97013152--97013307 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
97013142 TGCTATATAA
* *
97013152 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
97013217 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
97013234 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
97013298 CACTTAGTGC
65 CACTTAGTGC
97013308 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:97018864 original size:50 final size:50
Alignment explanation
Indices: 97018785--97018968 Score: 230
Period size: 50 Copynumber: 3.7 Consensus size: 50
97018775 TGCTAGGGAT
97018785 ATATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCATCGAG
1 ATATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCATCGAG
* * *
97018835 ATATGAGAGCTAGTGTAAGACCATATCTGGGACATGGCATCGGCACCGAT
1 ATATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCATCGAG
* * * ** **
97018885 A-ATAAGAGCTAGTGTAAGACCATTTCTGGGACATGACATCAAC-T-TTG
1 ATATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCATCGAG
* * *
97018932 ATGTGTGAGCTAGTGTAAGACCATGTCCGGGACATGG
1 ATATGAGAGCTAGTGTAAGACCATGTCTGGGACATGG
97018969 TGTTGGCACC
Statistics
Matches: 115, Mismatches: 18, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
47 1 0.01
48 29 0.25
49 37 0.32
50 48 0.42
ACGTcount: A:0.29, C:0.18, G:0.29, T:0.24
Consensus pattern (50 bp):
ATATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCATCGAG
Found at i:97018978 original size:97 final size:99
Alignment explanation
Indices: 97018790--97018968 Score: 254
Period size: 99 Copynumber: 1.8 Consensus size: 99
97018780 GGGATATATG
* **
97018790 AGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCATCGAGATATGAGAGCTAGTGTAAGA
1 AGAGCTAGTGTAAGACCATGTCTGGGACATGACATCAACATCGAGATATGAGAGCTAGTGTAAGA
*
97018855 CCATATCTGGGACATGGCATCGGCACCGATAATA
66 CCATATCCGGGACATGGCATCGGCACCGATAATA
* ** * *
97018889 AGAGCTAGTGTAAGACCATTTCTGGGACATGACATCAAC-T-TTGATGTGTGAGCTAGTGTAAGA
1 AGAGCTAGTGTAAGACCATGTCTGGGACATGACATCAACATCGAGATATGAGAGCTAGTGTAAGA
*
97018952 CCATGTCCGGGACATGG
66 CCATATCCGGGACATGG
97018969 TGTTGGCACC
Statistics
Matches: 70, Mismatches: 10, Indels: 2
0.85 0.12 0.02
Matches are distributed among these distances:
97 34 0.49
98 1 0.01
99 35 0.50
ACGTcount: A:0.29, C:0.18, G:0.29, T:0.23
Consensus pattern (99 bp):
AGAGCTAGTGTAAGACCATGTCTGGGACATGACATCAACATCGAGATATGAGAGCTAGTGTAAGA
CCATATCCGGGACATGGCATCGGCACCGATAATA
Found at i:97025744 original size:43 final size:43
Alignment explanation
Indices: 97025697--97025810 Score: 151
Period size: 43 Copynumber: 2.7 Consensus size: 43
97025687 TCACACATCG
* * **
97025697 ATGCCACTATCCCAGACA-GGATCTTACACGAAATCT-TTTAACA
1 ATGCCAATGTCCCAGACATGG-TCTTACACGAAATCTCAAT-ACA
*
97025740 ATGCCAATGTCCCAGACATGGTCTTACACGTAATCTCAATACA
1 ATGCCAATGTCCCAGACATGGTCTTACACGAAATCTCAATACA
97025783 ATGCCAATGTCCCAGACATGGTCTTACA
1 ATGCCAATGTCCCAGACATGGTCTTACA
97025811 TGTAATCACA
Statistics
Matches: 64, Mismatches: 5, Indels: 4
0.88 0.07 0.05
Matches are distributed among these distances:
43 61 0.95
44 3 0.05
ACGTcount: A:0.32, C:0.28, G:0.14, T:0.25
Consensus pattern (43 bp):
ATGCCAATGTCCCAGACATGGTCTTACACGAAATCTCAATACA
Found at i:97029876 original size:42 final size:42
Alignment explanation
Indices: 97029824--97029940 Score: 130
Period size: 42 Copynumber: 2.8 Consensus size: 42
97029814 GGACTACCGA
* *
97029824 GATTCCGTATAAGACCATATCTGGGATATGGCATCGGTAT-AT
1 GATTTCGTATAAGACCATATC-GGGATATGGCATCGATATGAT
* * * *
97029866 GATTTCGTATAAGACCATGTCAGGACATGGAATCGATATGAT
1 GATTTCGTATAAGACCATATCGGGATATGGCATCGATATGAT
* *
97029908 -ATTTCATGTAAGACCATATCCGGGATATGGCAT
1 GATTTCGTATAAGACCATAT-CGGGATATGGCAT
97029941 TGACACGGTA
Statistics
Matches: 61, Mismatches: 12, Indels: 4
0.79 0.16 0.05
Matches are distributed among these distances:
41 30 0.49
42 31 0.51
ACGTcount: A:0.31, C:0.16, G:0.23, T:0.30
Consensus pattern (42 bp):
GATTTCGTATAAGACCATATCGGGATATGGCATCGATATGAT
Found at i:97036859 original size:30 final size:30
Alignment explanation
Indices: 97036823--97037133 Score: 231
Period size: 30 Copynumber: 10.4 Consensus size: 30
97036813 TCACTGGCCA
97036823 ATGAAAAGGGATAGCTTCGACTATCGAATT
1 ATGAAAAGGGATAGCTTCGACTATCGAATT
* * * * *
97036853 ATGAAAATGAATAGCTTCAACTATTGAATA
1 ATGAAAAGGGATAGCTTCGACTATCGAATT
* * *
97036883 ATGAAAAGGGATAACTTCAACTATCAAATT
1 ATGAAAAGGGATAGCTTCGACTATCGAATT
* * * *
97036913 ATGAAAATGGAT-GGTAACGACCATC-AATT
1 ATGAAAAGGGATAGCT-TCGACTATCGAATT
* * * *
97036942 ATGAAAAGGGAT-GGTGACGACCATCAAATT
1 ATGAAAAGGGATAGCT-TCGACTATCGAATT
* * *
97036972 ATGAAAATGGATAGCTTCGGCTATTGAATT
1 ATGAAAAGGGATAGCTTCGACTATCGAATT
* * *
97037002 ATGAAAAGGGATATCTTCGGCTACCGAATT
1 ATGAAAAGGGATAGCTTCGACTATCGAATT
* * *
97037032 ATGAAAAGGGAT-GGTGACGAAC-ATCGGATT
1 ATGAAAAGGGATAGCT-TCG-ACTATCGAATT
** ** *
97037062 ATGAAAATAGATAGCTTCGAAAATCAAATT
1 ATGAAAAGGGATAGCTTCGACTATCGAATT
* *
97037092 ATGAAAAAGGATATCTTC-AGCTATC-AGATT
1 ATGAAAAGGGATAGCTTCGA-CTATCGA-ATT
97037122 ATGAAAAGGGAT
1 ATGAAAAGGGAT
97037134 GGTGACAACC
Statistics
Matches: 223, Mismatches: 49, Indels: 18
0.77 0.17 0.06
Matches are distributed among these distances:
29 32 0.14
30 186 0.83
31 5 0.02
ACGTcount: A:0.41, C:0.12, G:0.21, T:0.26
Consensus pattern (30 bp):
ATGAAAAGGGATAGCTTCGACTATCGAATT
Found at i:97036953 original size:29 final size:30
Alignment explanation
Indices: 97036905--97036983 Score: 133
Period size: 29 Copynumber: 2.7 Consensus size: 30
97036895 AACTTCAACT
97036905 ATCAAATTATGAAAATGGATGGTAACGACC
1 ATCAAATTATGAAAATGGATGGTAACGACC
* *
97036935 ATC-AATTATGAAAAGGGATGGTGACGACC
1 ATCAAATTATGAAAATGGATGGTAACGACC
97036964 ATCAAATTATGAAAATGGAT
1 ATCAAATTATGAAAATGGAT
97036984 AGCTTCGGCT
Statistics
Matches: 45, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
29 27 0.60
30 18 0.40
ACGTcount: A:0.43, C:0.11, G:0.22, T:0.24
Consensus pattern (30 bp):
ATCAAATTATGAAAATGGATGGTAACGACC
Found at i:97037050 original size:90 final size:89
Alignment explanation
Indices: 97036937--97037147 Score: 287
Period size: 90 Copynumber: 2.3 Consensus size: 89
97036927 TAACGACCAT
* *** **
97036937 CAATTATGAAAAGGGATGGTGACGACCATCAAATTATGAAAATGGATAGCTTCGGCTATTGAATT
1 CAATTATGAAAAGGGATGGTGACGACCATCAAATTATGAAAATAGATAGCTTCGAAAATCAAATT
* *
97037002 ATGAAAAGGGATATCTTCGGCTAC
66 ATGAAAAAGGATATCTTCAGCTAC
* **
97037026 CGAATTATGAAAAGGGATGGTGACGAACATCGGATTATGAAAATAGATAGCTTCGAAAATCAAAT
1 C-AATTATGAAAAGGGATGGTGACGACCATCAAATTATGAAAATAGATAGCTTCGAAAATCAAAT
*
97037091 TATGAAAAAGGATATCTTCAGCTAT
65 TATGAAAAAGGATATCTTCAGCTAC
*
97037116 CAGATTATGAAAAGGGATGGTGACAACCATCA
1 CA-ATTATGAAAAGGGATGGTGACGACCATCA
97037148 TGATTTTACT
Statistics
Matches: 105, Mismatches: 15, Indels: 3
0.85 0.12 0.02
Matches are distributed among these distances:
89 2 0.02
90 103 0.98
ACGTcount: A:0.39, C:0.13, G:0.23, T:0.25
Consensus pattern (89 bp):
CAATTATGAAAAGGGATGGTGACGACCATCAAATTATGAAAATAGATAGCTTCGAAAATCAAATT
ATGAAAAAGGATATCTTCAGCTAC
Found at i:97038616 original size:46 final size:46
Alignment explanation
Indices: 97038560--97038731 Score: 170
Period size: 46 Copynumber: 3.7 Consensus size: 46
97038550 ATTCCGTAGT
*
97038560 CGATGCATGTCCCAGACATGTCTTACACTAGCTTACGTCCCAAGGC
1 CGATGCATGTCCCAGACATGTCTTACACTAGCTTACGTCACAAGGC
* * * * **
97038606 TGATGCATGTCCCTGATATGTCTTACACTAG--TACTCGTCTCAATAC
1 CGATGCATGTCCCAGACATGTCTTACACTAGCTTA--CGTCACAAGGC
* * * * *
97038652 CGATGCCATGTCCCAGACATGATCTTACACTGGCTCT-CATAATATGGC
1 CGATG-CATGTCCCAGACATG-TCTTACACTAGCT-TACGTCACAAGGC
97038700 CGATGCATGTCCCAGACATGTCTTACACTAGC
1 CGATGCATGTCCCAGACATGTCTTACACTAGC
97038732 CCACAATAAC
Statistics
Matches: 101, Mismatches: 18, Indels: 14
0.76 0.14 0.11
Matches are distributed among these distances:
44 2 0.02
46 51 0.50
47 28 0.28
48 19 0.19
51 1 0.01
ACGTcount: A:0.24, C:0.30, G:0.18, T:0.28
Consensus pattern (46 bp):
CGATGCATGTCCCAGACATGTCTTACACTAGCTTACGTCACAAGGC
Found at i:97038706 original size:94 final size:92
Alignment explanation
Indices: 97038560--97038730 Score: 227
Period size: 94 Copynumber: 1.8 Consensus size: 92
97038550 ATTCCGTAGT
* ** * * *
97038560 CGATGCATGTCCCAGACATGTCTTACACTAGCTTACGTCCCAAGGCTGATGCATGTCCCTGATAT
1 CGATGCATGTCCCAGACATGTCTTACACTAGCTTACATAACAAGGCCGATGCATGTCCCAGACAT
97038625 GTCTTACACTAGTACTCGTCTCAATAC
66 GTCTTACACTAGTACTCGTCTCAATAC
* * *
97038652 CGATGCCATGTCCCAGACATGATCTTACACTGGCTCT-CATAATATGGCCGATGCATGTCCCAGA
1 CGATG-CATGTCCCAGACATG-TCTTACACTAGCT-TACATAACAAGGCCGATGCATGTCCCAGA
97038716 CATGTCTTACACTAG
63 CATGTCTTACACTAG
97038731 CCCACAATAA
Statistics
Matches: 67, Mismatches: 9, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
92 5 0.07
93 15 0.22
94 46 0.69
95 1 0.01
ACGTcount: A:0.25, C:0.29, G:0.18, T:0.28
Consensus pattern (92 bp):
CGATGCATGTCCCAGACATGTCTTACACTAGCTTACATAACAAGGCCGATGCATGTCCCAGACAT
GTCTTACACTAGTACTCGTCTCAATAC
Found at i:97051537 original size:26 final size:26
Alignment explanation
Indices: 97051501--97051582 Score: 139
Period size: 26 Copynumber: 3.2 Consensus size: 26
97051491 TGGTACAAAT
*
97051501 TGATAATAGGTTAGGTAAATGTTCAA
1 TGATAATAGGTTAGGTAAATGTTCCA
97051527 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
97051553 TGATAAT-GGTTTAGGTAAATGTTCCA
1 TGATAATAGG-TTAGGTAAATGTTCCA
97051579 TGAT
1 TGAT
97051583 GGGCATTTCA
Statistics
Matches: 54, Mismatches: 1, Indels: 2
0.95 0.02 0.04
Matches are distributed among these distances:
25 2 0.04
26 52 0.96
ACGTcount: A:0.34, C:0.06, G:0.23, T:0.37
Consensus pattern (26 bp):
TGATAATAGGTTAGGTAAATGTTCCA
Found at i:97057639 original size:26 final size:28
Alignment explanation
Indices: 97057573--97057648 Score: 84
Period size: 26 Copynumber: 2.8 Consensus size: 28
97057563 GAAAGTAGCT
* *
97057573 AAATTACTATAATACCCCTATGTATGGA
1 AAATTACTATTATACCCCTATGTATGCA
* *
97057601 AAATTACTGTTATACCCCTA-G-GTGCA
1 AAATTACTATTATACCCCTATGTATGCA
* *
97057627 AAATTACCATTATACCCGTATG
1 AAATTACTATTATACCCCTATG
97057649 GTTAATTTTG
Statistics
Matches: 40, Mismatches: 7, Indels: 3
0.80 0.14 0.06
Matches are distributed among these distances:
26 20 0.50
27 2 0.05
28 18 0.45
ACGTcount: A:0.36, C:0.21, G:0.12, T:0.32
Consensus pattern (28 bp):
AAATTACTATTATACCCCTATGTATGCA
Found at i:97057857 original size:27 final size:26
Alignment explanation
Indices: 97057749--97057863 Score: 133
Period size: 27 Copynumber: 4.3 Consensus size: 26
97057739 TGGAGGAAGC
* *
97057749 GTTCTGGTGGCTATGCCACAAATATCT
1 GTTCTGGTGGCTCTGCCAC-ATTATCT
*
97057776 GATCTGGTGGCTCTGCCACATATATCT
1 GTTCTGGTGGCTCTGCCACAT-TATCT
97057803 GTTCTGGTGGCTCTGCCACGATTATCT
1 GTTCTGGTGGCTCTGCCAC-ATTATCT
* *
97057830 GTATCTGG-GGACTCTGTCACATTGTCT
1 GT-TCTGGTGG-CTCTGCCACATTATCT
97057857 GTTCTGG
1 GTTCTGG
97057864 CAGCCATGCT
Statistics
Matches: 78, Mismatches: 6, Indels: 9
0.84 0.06 0.10
Matches are distributed among these distances:
26 6 0.08
27 57 0.73
28 15 0.19
ACGTcount: A:0.16, C:0.23, G:0.25, T:0.36
Consensus pattern (26 bp):
GTTCTGGTGGCTCTGCCACATTATCT
Found at i:97057858 original size:54 final size:54
Alignment explanation
Indices: 97057749--97057863 Score: 153
Period size: 54 Copynumber: 2.1 Consensus size: 54
97057739 TGGAGGAAGC
97057749 GTTCTGGTGGCTATGCCACAAATATCTGATCTGGTGGCTCTGCCACATATATCT
1 GTTCTGGTGGCTATGCCACAAATATCTGATCTGGTGGCTCTGCCACATATATCT
* * * * *
97057803 GTTCTGGTGGCTCTGCCACGATTATCTGTATCTGG-GGACTCTGTCACAT-TGTCT
1 GTTCTGGTGGCTATGCCACAAATATCTG-ATCTGGTGG-CTCTGCCACATATATCT
97057857 GTTCTGG
1 GTTCTGG
97057864 CAGCCATGCT
Statistics
Matches: 54, Mismatches: 5, Indels: 4
0.86 0.08 0.06
Matches are distributed among these distances:
54 38 0.70
55 16 0.30
ACGTcount: A:0.16, C:0.23, G:0.25, T:0.36
Consensus pattern (54 bp):
GTTCTGGTGGCTATGCCACAAATATCTGATCTGGTGGCTCTGCCACATATATCT
Found at i:97059109 original size:46 final size:48
Alignment explanation
Indices: 97059020--97059109 Score: 114
Period size: 46 Copynumber: 1.9 Consensus size: 48
97059010 CCGGCACCAT
***
97059020 TAAAATTAAAAAAAATTGGTGCTGACCATGTAATGGTTGGCACCGGAG
1 TAAAATTAAAAAAAATTGGTGCTGACCATGTAATGGCCAGCACCGGAG
*
97059068 TAAAA-TAAAAAAAA-TGGTGCT-AGCCATGTATTGGCCAGCACC
1 TAAAATTAAAAAAAATTGGTGCTGA-CCATGTAATGGCCAGCACC
97059110 AGAAATGTAA
Statistics
Matches: 37, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
45 1 0.03
46 22 0.59
47 9 0.24
48 5 0.14
ACGTcount: A:0.39, C:0.16, G:0.22, T:0.23
Consensus pattern (48 bp):
TAAAATTAAAAAAAATTGGTGCTGACCATGTAATGGCCAGCACCGGAG
Found at i:97059270 original size:54 final size:52
Alignment explanation
Indices: 97059130--97059271 Score: 196
Period size: 54 Copynumber: 2.7 Consensus size: 52
97059120 AAAAAAAAAA
* *
97059130 TTTGGGTGCTGGGCACTTATTGGCCGGCACTAGAGT-AAAGAAATTTATTTT
1 TTTGGGTGCTGGGCACTTATTGGCCGGCACTAGAGTAAAACAAATTTAATTT
** *
97059181 TTTGGGTGCTGGGCACTTATTGGCTTGCACCAGAGTAAAAACAAATTTAAATTT
1 TTTGGGTGCTGGGCACTTATTGGCCGGCACTAGAGT-AAAACAAATTT-AATTT
* *
97059235 TTTGGGTGCTGGGCACATATTTGCCGGCACTAGAGTA
1 TTTGGGTGCTGGGCACTTATTGGCCGGCACTAGAGTA
97059272 CTTTTTTGTG
Statistics
Matches: 78, Mismatches: 10, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
51 33 0.42
53 10 0.13
54 35 0.45
ACGTcount: A:0.25, C:0.15, G:0.27, T:0.33
Consensus pattern (52 bp):
TTTGGGTGCTGGGCACTTATTGGCCGGCACTAGAGTAAAACAAATTTAATTT
Found at i:97062995 original size:21 final size:21
Alignment explanation
Indices: 97062946--97062995 Score: 66
Period size: 21 Copynumber: 2.4 Consensus size: 21
97062936 TTGCCTAAAA
*
97062946 TATAAATTGGATTAAATTGAG
1 TATAAATTGCATTAAATTGAG
*
97062967 TATGAATTGCATTAAATTGATG
1 TATAAATTGCATTAAATTGA-G
97062989 T-TAAATT
1 TATAAATT
97062996 TACTCATATA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
21 23 0.92
22 2 0.08
ACGTcount: A:0.40, C:0.02, G:0.16, T:0.42
Consensus pattern (21 bp):
TATAAATTGCATTAAATTGAG
Found at i:97067441 original size:22 final size:22
Alignment explanation
Indices: 97067413--97067455 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 22
97067403 TATTAGGGTC
97067413 ATTTAAATTTTTT-TCATATTTT
1 ATTTAAATTTTTTGTCA-ATTTT
97067435 ATTTAAATTTTTTGTCAATTT
1 ATTTAAATTTTTTGTCAATTT
97067456 AAATATCATT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
22 17 0.85
23 3 0.15
ACGTcount: A:0.28, C:0.05, G:0.02, T:0.65
Consensus pattern (22 bp):
ATTTAAATTTTTTGTCAATTTT
Found at i:97067712 original size:18 final size:16
Alignment explanation
Indices: 97067685--97067722 Score: 58
Period size: 17 Copynumber: 2.2 Consensus size: 16
97067675 ATTCATTCCA
97067685 ATTTCATTTCCATTGTC
1 ATTTCATTTCCATT-TC
97067702 ATTTCCATTTCCATTTC
1 ATTT-CATTTCCATTTC
97067719 ATTT
1 ATTT
97067723 AAATTATTTT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
17 10 0.50
18 10 0.50
ACGTcount: A:0.18, C:0.24, G:0.03, T:0.55
Consensus pattern (16 bp):
ATTTCATTTCCATTTC
Found at i:97067716 original size:12 final size:11
Alignment explanation
Indices: 97067676--97067722 Score: 53
Period size: 12 Copynumber: 4.2 Consensus size: 11
97067666 TTTTTTTCAA
97067676 TTCA-TTCCAAT
1 TTCATTTCC-AT
97067687 TTCATTTCCAT
1 TTCATTTCCAT
97067698 TGTCATTTCCAT
1 T-TCATTTCCAT
97067710 TTCCATTT-CAT
1 TT-CATTTCCAT
97067721 TT
1 TT
97067723 AAATTATTTT
Statistics
Matches: 33, Mismatches: 0, Indels: 6
0.85 0.00 0.15
Matches are distributed among these distances:
11 13 0.39
12 20 0.61
ACGTcount: A:0.19, C:0.26, G:0.02, T:0.53
Consensus pattern (11 bp):
TTCATTTCCAT
Found at i:97067763 original size:21 final size:19
Alignment explanation
Indices: 97067717--97067763 Score: 58
Period size: 22 Copynumber: 2.3 Consensus size: 19
97067707 CATTTCCATT
*
97067717 TCATTTAAATTATTTTTTT
1 TCATTTAAATTATTTTTTC
97067736 TCAATTTAAATTTAATTTTTTC
1 TC-ATTTAAA-TT-ATTTTTTC
97067758 TCATTT
1 TCATTT
97067764 CATATAATTT
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
19 2 0.08
20 7 0.29
21 6 0.25
22 9 0.38
ACGTcount: A:0.28, C:0.09, G:0.00, T:0.64
Consensus pattern (19 bp):
TCATTTAAATTATTTTTTC
Found at i:97067799 original size:27 final size:24
Alignment explanation
Indices: 97067739--97067830 Score: 63
Period size: 21 Copynumber: 4.0 Consensus size: 24
97067729 TTTTTTTTCA
97067739 ATTTAAATTTAATTT-T-T-TC-TC
1 ATTT-AATTTAATTTATCTATCTTC
* *
97067760 ATTTCATATAATTTATCTATCTTCCC
1 ATTTAATTTAATTTATCTATCTT--C
97067786 ATTTTAATTTAATTT-T-T-TCTTC
1 A-TTTAATTTAATTTATCTATCTTC
* *
97067808 ATTTCATTTAAATTATCTATCTT
1 ATTTAATTTAATTTATCTATCTT
97067831 TCTATGCAAA
Statistics
Matches: 55, Mismatches: 6, Indels: 17
0.71 0.08 0.22
Matches are distributed among these distances:
20 8 0.15
21 16 0.29
22 4 0.07
23 3 0.05
24 9 0.16
25 1 0.02
26 3 0.05
27 11 0.20
ACGTcount: A:0.27, C:0.14, G:0.00, T:0.59
Consensus pattern (24 bp):
ATTTAATTTAATTTATCTATCTTC
Found at i:97067810 original size:48 final size:47
Alignment explanation
Indices: 97067709--97068098 Score: 371
Period size: 48 Copynumber: 8.2 Consensus size: 47
97067699 GTCATTTCCA
* * *
97067709 TTTC-CATTTCATTTAAATTAT-TTTTTTTCAATTTAAATTTAATTT
1 TTTCTCATTTCATTTAAATTATCTATCTTTCCATTTAAATTTAATTT
* * * *
97067754 TTTCTCATTTCATATAATTTATCTATCTTCCCATTTTAATTTAATTT
1 TTTCTCATTTCATTTAAATTATCTATCTTTCCATTTAAATTTAATTT
* **
97067801 TTTCTTCATTTCATTTAAATTATCTATCTTTCTATGCAAATTTAATTTT
1 TTTC-TCATTTCATTTAAATTATCTATCTTTCCATTTAAATTTAA-TTT
* * * *
97067850 TTTCTAATTTCATTTAAATTTAATTTTTTCCTCATTTCATTTAAATTTATATTT
1 TTTCTCATTTCATTTAAA-TT-A-TCTAT-CT--TTCCATTTAAATTTA-ATTT
* * * ** *
97067904 TTTCTCATTTCATTCACATTATTTATCTTTCCATGCAAATTTATTTT
1 TTTCTCATTTCATTTAAATTATCTATCTTTCCATTTAAATTTAATTT
*
97067951 TATTCTCATTTCATTTAAATTATATATCTTTCC-TTGTAAATTTAAATTT
1 T-TTCTCATTTCATTTAAATTATCTATCTTTCCATT-TAAATTT-AATTT
* * *
97068000 TTTCTCAATTCATTTATATTAT-T-T-TTTTCATTTAAATTT-ATTT
1 TTTCTCATTTCATTTAAATTATCTATCTTTCCATTTAAATTTAATTT
* * *
97068043 TTTCTTATTTCATTTAAATTATCTATCTTTCCATGTAATTTTAATTTT
1 TTTCTCATTTCATTTAAATTATCTATCTTTCCATTTAAATTTAA-TTT
97068091 TTTCTCAT
1 TTTCTCAT
97068099 ACCATTTATC
Statistics
Matches: 280, Mismatches: 45, Indels: 37
0.77 0.12 0.10
Matches are distributed among these distances:
43 23 0.08
44 1 0.00
45 16 0.06
46 30 0.11
47 30 0.11
48 121 0.43
49 14 0.05
50 3 0.01
51 7 0.03
52 3 0.01
53 2 0.01
54 29 0.10
55 1 0.00
ACGTcount: A:0.26, C:0.13, G:0.01, T:0.59
Consensus pattern (47 bp):
TTTCTCATTTCATTTAAATTATCTATCTTTCCATTTAAATTTAATTT
Found at i:97067813 original size:75 final size:71
Alignment explanation
Indices: 97067734--97067971 Score: 198
Period size: 75 Copynumber: 3.2 Consensus size: 71
97067724 AATTATTTTT
*
97067734 TTTCAATTTAAATTTAATTTTTTCTCATTTCATATAATTTATCTATCTTCCCATTTTAATTTAAT
1 TTTC-ATTTAAATTTAATTTTTTCTCATTTCAT-TAATTTATCTATCTT-CCATTTAAATTTAAT
97067799 TTTTTCTTCA
63 TTTTTC-TCA
* ** * *
97067809 TTTCATTTAAATTATCTATCTTTCTATGCAAATTTAATT--TTTTTCTAAT-TT-CATTTAAATT
1 TTTCATTTAAATT-T-AAT-TTT-T-T-CTCATTTCATTAATTTATCT-ATCTTCCATTTAAATT
97067870 TAATTTTTTCCTCA
59 TAATTTTTT-CTCA
* ** *
97067884 TTTCATTTAAATTTATATTTTTTCTCATTTCATTCACA-TTATTTATCTTTCCATGCAAATTTAT
1 TTTCATTTAAATTTA-ATTTTTTCTCATTTCATT-A-ATTTATCTATC-TTCCATTTAAATTTAA
97067948 TTTTATTCTCA
62 TTTT-TTCTCA
97067959 TTTCATTTAAATT
1 TTTCATTTAAATT
97067972 ATATATCTTT
Statistics
Matches: 131, Mismatches: 15, Indels: 34
0.73 0.08 0.19
Matches are distributed among these distances:
70 8 0.06
71 1 0.01
72 3 0.02
73 7 0.05
74 14 0.11
75 70 0.53
76 5 0.04
77 11 0.08
78 3 0.02
79 2 0.02
80 7 0.05
ACGTcount: A:0.27, C:0.14, G:0.01, T:0.58
Consensus pattern (71 bp):
TTTCATTTAAATTTAATTTTTTCTCATTTCATTAATTTATCTATCTTCCATTTAAATTTAATTTT
TTCTCA
Found at i:97067868 original size:27 final size:27
Alignment explanation
Indices: 97067838--97067917 Score: 126
Period size: 27 Copynumber: 3.0 Consensus size: 27
97067828 CTTTCTATGC
*
97067838 AAATTTAATTTTTTTCTAATTTCATTT
1 AAATTTAATTTTTTTCTCATTTCATTT
*
97067865 AAATTTAATTTTTTCCTCATTTCATTT
1 AAATTTAATTTTTTTCTCATTTCATTT
97067892 AAATTT-ATATTTTTTCTCATTTCATT
1 AAATTTAAT-TTTTTTCTCATTTCATT
97067918 CACATTATTT
Statistics
Matches: 49, Mismatches: 3, Indels: 2
0.91 0.06 0.04
Matches are distributed among these distances:
26 2 0.04
27 47 0.96
ACGTcount: A:0.28, C:0.11, G:0.00, T:0.61
Consensus pattern (27 bp):
AAATTTAATTTTTTTCTCATTTCATTT
Found at i:97067905 original size:102 final size:102
Alignment explanation
Indices: 97067785--97067971 Score: 272
Period size: 102 Copynumber: 1.8 Consensus size: 102
97067775 TCTATCTTCC
* * *
97067785 CATTTTAATTTAA-TTTTTTCTTCATTTCATTTAAATTATCTATCTTTCTATGCAAATTTAATTT
1 CATTTAAATTTAATTTTTTTC-TCATTTCATTCAAATTATCTATCTTTCCATGCAAATTT-ATTT
97067849 TT-TTCTAATTTCATTTAAATTTAATTTTTTCCTCATTT
64 TTATTCTAATTTCATTTAAATTTAATTTTTTCCTCATTT
* *
97067887 CATTTAAATTT-ATATTTTTTCTCATTTCATTCACATTATTTATCTTTCCATGCAAATTTATTTT
1 CATTTAAATTTAAT-TTTTTTCTCATTTCATTCAAATTATCTATCTTTCCATGCAAATTTATTTT
*
97067951 TATTCTCATTTCATTTAAATT
65 TATTCTAATTTCATTTAAATT
97067972 ATATATCTTT
Statistics
Matches: 76, Mismatches: 6, Indels: 6
0.86 0.07 0.07
Matches are distributed among these distances:
101 7 0.09
102 62 0.82
103 7 0.09
ACGTcount: A:0.27, C:0.14, G:0.01, T:0.58
Consensus pattern (102 bp):
CATTTAAATTTAATTTTTTTCTCATTTCATTCAAATTATCTATCTTTCCATGCAAATTTATTTTT
ATTCTAATTTCATTTAAATTTAATTTTTTCCTCATTT
Found at i:97067960 original size:150 final size:138
Alignment explanation
Indices: 97067716--97068098 Score: 416
Period size: 150 Copynumber: 2.7 Consensus size: 138
97067706 CCATTTCCAT
*
97067716 TTCATTTAAATTATTTTTTTTCAATTTAAATTTA-ATTTTTTCTCATTTCATATAATTTATCTAT
1 TTCATTTATATTA-TTTTTTTC-ATTTAAATTTATATTTTTTCTCATTTCAT-TAA-TTATCTAT
* * * * *
97067780 CTTCCCATTTTAATTTAATTTTTTCTTCATTTCATTTAAATTATCTATCTTT-CTATGCAAATTT
62 CTTTCCATGTAAATTTATTTTTTTC-TCATTTCATTTAAATTATATATCTTTCCT-TGCAAATTT
*
97067844 AATTTTTTTCT-AA
125 AAATTTTTTCTCAA
*
97067857 TTTCATTTAAATTTAATTTTTTCCTCATTTCATTTAAATTTATATTTTTTCTCATTTCATTCACA
1 -TTCATTT--A--T-ATTATTT--T--TTTCATTTAAATTTATATTTTTTCTCATTTCATT-A-A
* *
97067922 TTATTTATCTTTCCATGCAAATTTATTTTTATTCTCATTTCATTTAAATTATATATCTTTCCTTG
54 TTATCTATCTTTCCATGTAAATTTATTTTT-TTCTCATTTCATTTAAATTATATATCTTTCCTTG
*
97067987 TAAATTTAAATTTTTTCTCAA
118 CAAATTTAAATTTTTTCTCAA
*
97068008 TTCATTTATATTATTTTTTTCATTTAAA-TT-TATTTTTTCTTATTTCATTTAAATTATCTATCT
1 TTCATTTATATTATTTTTTTCATTTAAATTTATATTTTTTCTCATTTCA-TT-AATTATCTATCT
*
97068071 TTCCATGTAATTTTAATTTTTTTCTCAT
64 TTCCATGTAAATTT-ATTTTTTTCTCAT
97068099 ACCATTTATC
Statistics
Matches: 207, Mismatches: 17, Indels: 37
0.79 0.07 0.14
Matches are distributed among these distances:
139 45 0.22
140 11 0.05
141 11 0.05
142 7 0.03
143 1 0.00
144 1 0.00
145 6 0.03
146 4 0.02
147 3 0.01
148 2 0.01
149 12 0.06
150 96 0.46
151 8 0.04
ACGTcount: A:0.27, C:0.13, G:0.01, T:0.59
Consensus pattern (138 bp):
TTCATTTATATTATTTTTTTCATTTAAATTTATATTTTTTCTCATTTCATTAATTATCTATCTTT
CCATGTAAATTTATTTTTTTCTCATTTCATTTAAATTATATATCTTTCCTTGCAAATTTAAATTT
TTTCTCAA
Found at i:97068026 original size:75 final size:74
Alignment explanation
Indices: 97067798--97068027 Score: 193
Period size: 75 Copynumber: 3.1 Consensus size: 74
97067788 TTTAATTTAA
* * *
97067798 TTTTTTCTTCATTTCATTTAAATTATCTATCTTT-CTATGCAAATTTAATTTTTTTCT-AATTTC
1 TTTTTTC-TCATTTCATTTAAATTATATATCTTTCCT-TGTAAATTTAAATTTTTTCTCAA-TTC
*
97067861 ATTTAAATTTAAT
63 ATTTAAA-TTATT
* * * * * * * *
97067874 TTTTTCCTCATTTCATTTAAATT-TATATTTTTTCTCATT-T-CATTCACATTATTTATC-TTTC
1 TTTTTTCTCATTTCATTTAAATTATATA-TCTTTC-C-TTGTAAATTTAAATTTTTTCTCAATT-
**
97067935 CATGCAAATTTATT
62 CATTTAAA-TTATT
*
97067949 TTTATTCTCATTTCATTTAAATTATATATCTTTCCTTGTAAATTTAAATTTTTTCTCAATTCATT
1 TTTTTTCTCATTTCATTTAAATTATATATCTTTCCTTGTAAATTTAAATTTTTTCTCAATTCATT
*
97068014 TATATTATT
66 TAAATTATT
97068023 TTTTT
1 TTTTT
97068028 CATTTAAATT
Statistics
Matches: 117, Mismatches: 27, Indels: 22
0.70 0.16 0.13
Matches are distributed among these distances:
73 2 0.02
74 16 0.14
75 84 0.72
76 12 0.10
77 2 0.02
78 1 0.01
ACGTcount: A:0.26, C:0.13, G:0.01, T:0.59
Consensus pattern (74 bp):
TTTTTTCTCATTTCATTTAAATTATATATCTTTCCTTGTAAATTTAAATTTTTTCTCAATTCATT
TAAATTATT
Found at i:97068031 original size:18 final size:19
Alignment explanation
Indices: 97068008--97068045 Score: 60
Period size: 18 Copynumber: 2.1 Consensus size: 19
97067998 TTTTTCTCAA
*
97068008 TTCATTTATA-TTATTTTT
1 TTCATTTAAATTTATTTTT
97068026 TTCATTTAAATTTATTTTT
1 TTCATTTAAATTTATTTTT
97068045 T
1 T
97068046 CTTATTTCAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 9 0.50
19 9 0.50
ACGTcount: A:0.24, C:0.05, G:0.00, T:0.71
Consensus pattern (19 bp):
TTCATTTAAATTTATTTTT
Found at i:97068136 original size:91 final size:91
Alignment explanation
Indices: 97067948--97068116 Score: 214
Period size: 91 Copynumber: 1.8 Consensus size: 91
97067938 GCAAATTTAT
* *
97067948 TTTTATTCTCATTTCATTTAAATTATATATCTTTCCTTGTAAATTTAAATTTTTTCTCAATTCAT
1 TTTT-TTCTCATTTCATTTAAATTATATATCTTTCCATGTAAATTTAAATTTTTTCTCAATCCAT
* * **
97068013 TTATATTATTTTTTTCATTTAAATTTA
65 TTATATAATTTTTATCATTTAAATCAA
* * * *
97068040 TTTTTTCTTATTTCATTTAAATTATCTATCTTTCCATGTAATTTTAATTTTTTTCTC-ATACCAT
1 TTTTTTCTCATTTCATTTAAATTATATATCTTTCCATGTAAATTTAAATTTTTTCTCAAT-CCAT
*
97068104 TTATCTAATTTTT
65 TTATATAATTTTT
97068117 CATATTTTTA
Statistics
Matches: 68, Mismatches: 8, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
90 2 0.03
91 62 0.91
92 4 0.06
ACGTcount: A:0.26, C:0.12, G:0.01, T:0.60
Consensus pattern (91 bp):
TTTTTTCTCATTTCATTTAAATTATATATCTTTCCATGTAAATTTAAATTTTTTCTCAATCCATT
TATATAATTTTTATCATTTAAATCAA
Found at i:97070662 original size:42 final size:42
Alignment explanation
Indices: 97070584--97070664 Score: 101
Period size: 42 Copynumber: 1.9 Consensus size: 42
97070574 GTGTAGGTTT
* * * *
97070584 CACATGGCTAAGACACATGTCCGTGTTCTAGGCCGTGTGGCA
1 CACACGGCTAAGACACACGCCCGTGTTCTAGCCCGTGTGGCA
*
97070626 CACACGGCTGAGACACACGCCCGTGTCTCT-GCCCGTGTG
1 CACACGGCTAAGACACACGCCCGTGT-TCTAGCCCGTGTG
97070665 CTCAATTCTG
Statistics
Matches: 33, Mismatches: 5, Indels: 2
0.82 0.12 0.05
Matches are distributed among these distances:
42 30 0.91
43 3 0.09
ACGTcount: A:0.19, C:0.32, G:0.28, T:0.21
Consensus pattern (42 bp):
CACACGGCTAAGACACACGCCCGTGTTCTAGCCCGTGTGGCA
Found at i:97074935 original size:61 final size:61
Alignment explanation
Indices: 97074860--97074981 Score: 235
Period size: 61 Copynumber: 2.0 Consensus size: 61
97074850 AGTCTAGGCT
97074860 AAATCCCCCGTAGTATTAACTAATAGAGCAATGTCAGGATTAACAGTCCAGGCTAAATCCC
1 AAATCCCCCGTAGTATTAACTAATAGAGCAATGTCAGGATTAACAGTCCAGGCTAAATCCC
*
97074921 AAATCCCCCGTAGTATTAACTAATAGAGCAATGTCGGGATTAACAGTCCAGGCTAAATCCC
1 AAATCCCCCGTAGTATTAACTAATAGAGCAATGTCAGGATTAACAGTCCAGGCTAAATCCC
97074982 TTTCAATGAC
Statistics
Matches: 60, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
61 60 1.00
ACGTcount: A:0.35, C:0.25, G:0.17, T:0.23
Consensus pattern (61 bp):
AAATCCCCCGTAGTATTAACTAATAGAGCAATGTCAGGATTAACAGTCCAGGCTAAATCCC
Found at i:97088584 original size:20 final size:19
Alignment explanation
Indices: 97088547--97088589 Score: 52
Period size: 20 Copynumber: 2.2 Consensus size: 19
97088537 ATGCCTAGTT
97088547 TTAATTAAACATGTTTTAAA
1 TTAATTAAACATGTTTT-AA
*
97088567 TTAATTAAATAT-TATTTAA
1 TTAATTAAACATGT-TTTAA
97088586 TTAA
1 TTAA
97088590 GCTAATGACA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
19 7 0.33
20 14 0.67
ACGTcount: A:0.47, C:0.02, G:0.02, T:0.49
Consensus pattern (19 bp):
TTAATTAAACATGTTTTAA
Found at i:97090250 original size:79 final size:81
Alignment explanation
Indices: 97090148--97090331 Score: 222
Period size: 79 Copynumber: 2.3 Consensus size: 81
97090138 GCTCCTCGTT
* *
97090148 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAAT-TCGCACAAATGCCTTCGGGA-CTTAACC
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGT-ATCTCGCACAAATGCCTTC-GGATCTTAACC
*
97090210 CGGAT-TTAGTAAC-TCGCA
63 CGGATATT-GTAACTTAGCA
**
97090228 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGGATCTTAACCCGG
*
97090292 ATATTGTCACTTAGCA
66 ATATTGTAACTTAGCA
97090308 C-AA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
97090332 CATCATTCAA
Statistics
Matches: 92, Mismatches: 6, Indels: 13
0.83 0.05 0.12
Matches are distributed among these distances:
78 14 0.15
79 56 0.61
80 22 0.24
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (81 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGGATCTTAACCCGG
ATATTGTAACTTAGCA
Found at i:97090265 original size:39 final size:41
Alignment explanation
Indices: 97090148--97090331 Score: 199
Period size: 40 Copynumber: 4.6 Consensus size: 41
97090138 GCTCCTCGTT
* *
97090148 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAAT-TCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGTAATCTCGCA
* *
97090188 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAA-CTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAATCTCGCA
97090228 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGT-ATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAATCTCGCA
* * *
97090267 CAAATGCCTTC-GGATCTTAGTCCGGATATT-GTCA-CTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGA-ATTAGTAATC-TCGCA
97090308 C-AA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
97090332 CATCATTCAA
Statistics
Matches: 128, Mismatches: 7, Indels: 19
0.83 0.05 0.12
Matches are distributed among these distances:
38 3 0.02
39 48 0.38
40 66 0.52
41 11 0.09
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (41 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAATCTCGCA
Found at i:97092650 original size:57 final size:57
Alignment explanation
Indices: 97092556--97092668 Score: 201
Period size: 57 Copynumber: 2.0 Consensus size: 57
97092546 TATGACTCGA
97092556 TCCCATTTCCACTCGGGTATCATGATCGGCAAGAGTAATCCTGAAGGCACTTGATGG
1 TCCCATTTCCACTCGGGTATCATGATCGGCAAGAGTAATCCTGAAGGCACTTGATGG
*
97092613 TCCCATTTCCACTCGGGTATCATGATCGGC-TGAAGTAATCCTGAAGGCACTTGATG
1 TCCCATTTCCACTCGGGTATCATGATCGGCAAG-AGTAATCCTGAAGGCACTTGATG
97092669 TTCCGCTTTC
Statistics
Matches: 54, Mismatches: 1, Indels: 2
0.95 0.02 0.04
Matches are distributed among these distances:
56 1 0.02
57 53 0.98
ACGTcount: A:0.24, C:0.25, G:0.24, T:0.27
Consensus pattern (57 bp):
TCCCATTTCCACTCGGGTATCATGATCGGCAAGAGTAATCCTGAAGGCACTTGATGG
Found at i:97097768 original size:40 final size:40
Alignment explanation
Indices: 97097724--97097867 Score: 152
Period size: 40 Copynumber: 3.6 Consensus size: 40
97097714 GCTCCTCGTT
*
97097724 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAATTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAATTCGCA
* *
97097764 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGG-TTATAGTAATTCGCA
* * * * * *
97097804 CAAATACCTTC-GGATCTTAGTCCGGATATTGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGTTATAGT-AATTCGCA
97097845 C-AA-GCCTTCGGGACTTAGCCCGG
1 CAAATGCCTTCGGGACTTAGCCCGG
97097868 ACAGCATTCA
Statistics
Matches: 86, Mismatches: 13, Indels: 11
0.78 0.12 0.10
Matches are distributed among these distances:
39 18 0.21
40 60 0.70
41 8 0.09
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAATTCGCA
Found at i:97104045 original size:27 final size:27
Alignment explanation
Indices: 97104007--97104120 Score: 142
Period size: 27 Copynumber: 4.2 Consensus size: 27
97103997 CAGCATGGCT
* *
97104007 ACCAGA-ACAGATATTGTGACAGAGTC
1 ACCAGATACAGATATTGTGGCAGAGCC
97104033 ACCAGATACAGATATTGTGGCAGAGCC
1 ACCAGATACAGATATTGTGGCAGAGCC
* * *
97104060 ACCAGAAACAGATATTCGTGGCAAAGCT
1 ACCAGATACAGATATT-GTGGCAGAGCC
*
97104088 ACCAGAT-CAGATATTTGTGGTAGAGCC
1 ACCAGATACAGATA-TTGTGGCAGAGCC
97104115 ACCAGA
1 ACCAGA
97104121 ACGCTTCCTT
Statistics
Matches: 76, Mismatches: 9, Indels: 5
0.84 0.10 0.06
Matches are distributed among these distances:
26 6 0.08
27 53 0.70
28 17 0.22
ACGTcount: A:0.36, C:0.21, G:0.24, T:0.19
Consensus pattern (27 bp):
ACCAGATACAGATATTGTGGCAGAGCC
Found at i:97104099 original size:54 final size:55
Alignment explanation
Indices: 97104007--97104121 Score: 157
Period size: 55 Copynumber: 2.1 Consensus size: 55
97103997 CAGCATGGCT
*
97104007 ACCAG-AACAGATATTGTGACAGAGTCACCAGATACAGATA-TTGTGGCAGAGCC
1 ACCAGAAACAGATATTGTGACAAAGTCACCAGATACAGATATTTGTGGCAGAGCC
* *
97104060 ACCAGAAACAGATATTCGTGGCAAAG-CTACCAGAT-CAGATATTTGTGGTAGAGCC
1 ACCAGAAACAGATATT-GTGACAAAGTC-ACCAGATACAGATATTTGTGGCAGAGCC
97104115 ACCAGAA
1 ACCAGAA
97104122 CGCTTCCTTC
Statistics
Matches: 55, Mismatches: 3, Indels: 6
0.86 0.05 0.09
Matches are distributed among these distances:
53 5 0.09
54 17 0.31
55 33 0.60
ACGTcount: A:0.37, C:0.21, G:0.23, T:0.19
Consensus pattern (55 bp):
ACCAGAAACAGATATTGTGACAAAGTCACCAGATACAGATATTTGTGGCAGAGCC
Found at i:97109295 original size:29 final size:29
Alignment explanation
Indices: 97109256--97109334 Score: 106
Period size: 29 Copynumber: 2.7 Consensus size: 29
97109246 CTTAATAATC
*
97109256 AACCACGCACACTTAGTGCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCATGCA-TTTCA
*
97109286 AACTCGCACACTTAGTGCCATGCATTTCA
1 AACCCGCACACTTAGTGCCATGCATTTCA
*
97109315 AGCCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
97109335 ATCTCACAAC
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
28 3 0.07
29 38 0.86
30 3 0.07
ACGTcount: A:0.28, C:0.33, G:0.15, T:0.24
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCATTTCA
Found at i:97111349 original size:26 final size:26
Alignment explanation
Indices: 97111313--97111368 Score: 94
Period size: 26 Copynumber: 2.2 Consensus size: 26
97111303 CAAATTCATC
* *
97111313 GAAAGGTAAAAGCTTCAGATCAGCAG
1 GAAAGGTAAAAGCATCAAATCAGCAG
97111339 GAAAGGTAAAAGCATCAAATCAGCAG
1 GAAAGGTAAAAGCATCAAATCAGCAG
97111365 GAAA
1 GAAA
97111369 ACAAATATCT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.48, C:0.14, G:0.25, T:0.12
Consensus pattern (26 bp):
GAAAGGTAAAAGCATCAAATCAGCAG
Found at i:97115680 original size:46 final size:47
Alignment explanation
Indices: 97115580--97115993 Score: 249
Period size: 47 Copynumber: 8.7 Consensus size: 47
97115570 ACTGTTACAA
* ** * * *
97115580 CCAGTATAAGACCATGTCCAGGACATGGCATTGGCATTGAGATGAGAG
1 CCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTTGAGATG-TAG
*
97115628 CTAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTTGAGATGTAAG
1 CCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTTGAGATGT-AG
* * *
97115674 CCAGTGTAAGA-CATGTCTAGGACAT-GCATCTG-CTACGAGATGT-G
1 CCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCT-TGAGATGTAG
** * * *
97115718 TTAGTGTAAGACCATGTCTGGGGCATGGCATTGGCACGTAT-AGAGGT-G
1 CCAGTGTAAGACCATGTCTGGGACATGGCATCGGC-C-T-TGAGATGTAG
* * ** * *
97115766 TCAGTGTAAGACCATGTCTAGGACATGGCATCGGTATGGATATGTGAGAG
1 CCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTTGAGATGT---AG
* * * * ** ** ** *
97115816 CTAGTGTAAGACCATGTTTGAGACATGGCGTTAGCCTCAATTTCAATAG
1 CCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTTGAGAT--GTAG
* * * * *
97115865 TCAATGTAAGACCATGTTTGGGACATGGCAT-TGACTTGATAGATG-AG
1 CCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTTG--AGATGTAG
*
97115912 CCAGTGTAAGACCATGTCTGGGACATGGCATC-GACTTGATGGATG-AG
1 CCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTTGA--GATGTAG
* *
97115959 CCAGTGTAAGACTATCTCTGGGACATGGCATCGGC
1 CCAGTGTAAGACCATGTCTGGGACATGGCATCGGC
97115994 ATCATACCCT
Statistics
Matches: 286, Mismatches: 60, Indels: 40
0.74 0.16 0.10
Matches are distributed among these distances:
44 10 0.03
45 15 0.05
46 63 0.22
47 84 0.29
48 50 0.17
49 30 0.10
50 33 0.12
52 1 0.00
ACGTcount: A:0.27, C:0.18, G:0.29, T:0.26
Consensus pattern (47 bp):
CCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTTGAGATGTAG
Found at i:97119741 original size:42 final size:42
Alignment explanation
Indices: 97119695--97119815 Score: 163
Period size: 42 Copynumber: 2.9 Consensus size: 42
97119685 TATCATACTA
* *
97119695 ATGCCATATCCAAGATATGGTCTTACATGGGATCTCATATCG
1 ATGCCATATCCCAGATATGGTCTTACATGGAATCTCATATCG
* * *
97119737 ATGCCAATAGCCCAGCTATGGTCTTACA-CGAATCTCATATCG
1 ATGCC-ATATCCCAGATATGGTCTTACATGGAATCTCATATCG
* *
97119779 ATGTCATATCCCAGATATGGTCTTACATGCAATCTCA
1 ATGCCATATCCCAGATATGGTCTTACATGGAATCTCA
97119816 ACTAACCCTA
Statistics
Matches: 67, Mismatches: 10, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
41 20 0.30
42 28 0.42
43 19 0.28
ACGTcount: A:0.29, C:0.25, G:0.17, T:0.30
Consensus pattern (42 bp):
ATGCCATATCCCAGATATGGTCTTACATGGAATCTCATATCG
Found at i:97121837 original size:44 final size:44
Alignment explanation
Indices: 97121774--97121865 Score: 157
Period size: 44 Copynumber: 2.1 Consensus size: 44
97121764 AATAAAAGAA
* *
97121774 ATTTCTATAACTTTGGAAATAATTTAATTGAGTCAATTTATTCG
1 ATTTCTATAACTTCGGAAATAATTTAATTCAGTCAATTTATTCG
*
97121818 ATTTCTATGACTTCGGAAATAATTTAATTCAGTCAATTTATTCG
1 ATTTCTATAACTTCGGAAATAATTTAATTCAGTCAATTTATTCG
97121862 ATTT
1 ATTT
97121866 TGAATTAAAT
Statistics
Matches: 45, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
44 45 1.00
ACGTcount: A:0.33, C:0.11, G:0.11, T:0.46
Consensus pattern (44 bp):
ATTTCTATAACTTCGGAAATAATTTAATTCAGTCAATTTATTCG
Found at i:97122513 original size:32 final size:31
Alignment explanation
Indices: 97122477--97122577 Score: 89
Period size: 30 Copynumber: 3.3 Consensus size: 31
97122467 TATTAAATTC
97122477 AATTTAATATTTATCTAGATAATATTTTTTTT
1 AATTTAATATTTATCT-GATAATATTTTTTTT
* * * * ***
97122509 AATTTAATAGTAATATGA-GATATTAAATTT
1 AATTTAATATTTATCTGATAATATTTTTTTT
* *
97122539 AATTTAACATTTATCTTGATAATA-TTTTATT
1 AATTTAATATTTATC-TGATAATATTTTTTTT
97122570 AATTTAAT
1 AATTTAAT
97122578 GTTAATGTGA
Statistics
Matches: 50, Mismatches: 17, Indels: 5
0.69 0.24 0.07
Matches are distributed among these distances:
30 19 0.38
31 15 0.30
32 16 0.32
ACGTcount: A:0.40, C:0.03, G:0.05, T:0.52
Consensus pattern (31 bp):
AATTTAATATTTATCTGATAATATTTTTTTT
Found at i:97124895 original size:28 final size:29
Alignment explanation
Indices: 97124854--97124910 Score: 73
Period size: 28 Copynumber: 2.0 Consensus size: 29
97124844 GCTGTAAATT
* *
97124854 ACGCTTTGGCAAATA-A-ATAAATTGAATA
1 ACGCTTTCGAAAATATATATAAA-TGAATA
97124882 ACGCTTTCGAAAATATATATAAATGAATA
1 ACGCTTTCGAAAATATATATAAATGAATA
97124911 TGAGTAAAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
28 13 0.52
29 7 0.28
30 5 0.20
ACGTcount: A:0.47, C:0.11, G:0.12, T:0.30
Consensus pattern (29 bp):
ACGCTTTCGAAAATATATATAAATGAATA
Found at i:97127914 original size:22 final size:22
Alignment explanation
Indices: 97127889--97127931 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
97127879 TAAAATGATT
* *
97127889 TAAATGAAGTGTTAAGTGATAG
1 TAAATAAAGTGTGAAGTGATAG
97127911 TAAATAAAGTGTGAAGTGATA
1 TAAATAAAGTGTGAAGTGATA
97127932 TGATAGTGAC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.44, C:0.00, G:0.26, T:0.30
Consensus pattern (22 bp):
TAAATAAAGTGTGAAGTGATAG
Found at i:97130230 original size:27 final size:27
Alignment explanation
Indices: 97130200--97130297 Score: 117
Period size: 27 Copynumber: 3.6 Consensus size: 27
97130190 TTAGTTTACC
* *
97130200 AAATTACCAAAATA-CCTCTGGTTTGTA
1 AAATCACCAAAATACCCT-TGGTTTATA
* *
97130227 AAATTACTAAAATACCCTTGGTTTATA
1 AAATCACCAAAATACCCTTGGTTTATA
* *
97130254 AAATCGCCAAAATACCCTTGGCTTATA
1 AAATCACCAAAATACCCTTGGTTTATA
*
97130281 AAATCAACAAAATACCC
1 AAATCACCAAAATACCC
97130298 CTAGTTTGTA
Statistics
Matches: 62, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
27 59 0.95
28 3 0.05
ACGTcount: A:0.42, C:0.21, G:0.08, T:0.29
Consensus pattern (27 bp):
AAATCACCAAAATACCCTTGGTTTATA
Found at i:97130335 original size:27 final size:27
Alignment explanation
Indices: 97130318--97130773 Score: 585
Period size: 27 Copynumber: 16.9 Consensus size: 27
97130308 GTTTTTTCGC
97130318 AATACCCCTGTAGGGTAGAATTACCGGA
1 AATACCCCTGTAGGGTAGAATTACC-GA
*
97130346 AA-ACCCCTGTAGGGTAGAATTAAC-A
1 AATACCCCTGTAGGGTAGAATTACCGA
*
97130371 GAATACCCCTGTAGGATAGAATTACCGA
1 -AATACCCCTGTAGGGTAGAATTACCGA
* *
97130399 AATACCCCTGTAGGGTAGAATTACTGG
1 AATACCCCTGTAGGGTAGAATTACCGA
*
97130426 AATACCTCTGTAGGGTAGAATTACCGA
1 AATACCCCTGTAGGGTAGAATTACCGA
* * *
97130453 AATACCCCTGTATGGTAGAATTGCAGA
1 AATACCCCTGTAGGGTAGAATTACCGA
*
97130480 AATACCCCTGTAGGGTAGAATTACAGA
1 AATACCCCTGTAGGGTAGAATTACCGA
*
97130507 AATACCCCTATAGGGTAGAATTACCGA
1 AATACCCCTGTAGGGTAGAATTACCGA
* *
97130534 AATACCCCTATAGGGTAGAATTACCGG
1 AATACCCCTGTAGGGTAGAATTACCGA
* *
97130561 AATACCCCTGTAGGGTAGAATTATCGG
1 AATACCCCTGTAGGGTAGAATTACCGA
* * *
97130588 AATACACCTATAGGGTAGAATTACTGA
1 AATACCCCTGTAGGGTAGAATTACCGA
** * *
97130615 AATACCCCTGTAACGTAGAATTATCGC
1 AATACCCCTGTAGGGTAGAATTACCGA
* *
97130642 AATACCCCTGTAGGGTAGAATTATCGC
1 AATACCCCTGTAGGGTAGAATTACCGA
*
97130669 AATACCCCTGTATGGTAGAATTACCGA
1 AATACCCCTGTAGGGTAGAATTACCGA
* **
97130696 AACACCCCTGTAGGGTAGAATTACTAA
1 AATACCCCTGTAGGGTAGAATTACCGA
*
97130723 AATACCCCTGTAGGGTGGAATTACCGA
1 AATACCCCTGTAGGGTAGAATTACCGA
* * * *
97130750 GATA-CCTTGTGGGGTAAAATTACC
1 AATACCCCTGTAGGGTAGAATTACC
97130774 ATTTTGGCCG
Statistics
Matches: 375, Mismatches: 50, Indels: 8
0.87 0.12 0.02
Matches are distributed among these distances:
25 1 0.00
26 18 0.05
27 353 0.94
28 3 0.01
ACGTcount: A:0.34, C:0.20, G:0.22, T:0.24
Consensus pattern (27 bp):
AATACCCCTGTAGGGTAGAATTACCGA
Found at i:97131252 original size:22 final size:22
Alignment explanation
Indices: 97131200--97131264 Score: 78
Period size: 22 Copynumber: 3.0 Consensus size: 22
97131190 TTAAAGCCTT
* *
97131200 CTGATTATGGCTTTGTGTCAAC
1 CTGATTATGGCTCTGTGCCAAC
*
97131222 CT-ACATATGGCTCTGTGCCAAC
1 CTGA-TTATGGCTCTGTGCCAAC
*
97131244 CTGATTATGGCTGTGTGCCAA
1 CTGATTATGGCTCTGTGCCAA
97131265 ACGTATTTGC
Statistics
Matches: 36, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
21 1 0.03
22 34 0.94
23 1 0.03
ACGTcount: A:0.20, C:0.23, G:0.23, T:0.34
Consensus pattern (22 bp):
CTGATTATGGCTCTGTGCCAAC
Found at i:97131960 original size:34 final size:34
Alignment explanation
Indices: 97131917--97131984 Score: 127
Period size: 34 Copynumber: 2.0 Consensus size: 34
97131907 TTGCCTTTAA
*
97131917 ATAAAGAGAACCTTGAGGAGAGTAAAGGTACCTT
1 ATAAAGAGAACCATGAGGAGAGTAAAGGTACCTT
97131951 ATAAAGAGAACCATGAGGAGAGTAAAGGTACCTT
1 ATAAAGAGAACCATGAGGAGAGTAAAGGTACCTT
97131985 TCTTGGCTGA
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 33 1.00
ACGTcount: A:0.43, C:0.12, G:0.26, T:0.19
Consensus pattern (34 bp):
ATAAAGAGAACCATGAGGAGAGTAAAGGTACCTT
Found at i:97132377 original size:27 final size:27
Alignment explanation
Indices: 97132347--97132460 Score: 156
Period size: 27 Copynumber: 4.2 Consensus size: 27
97132337 TTAGTTTACC
*
97132347 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTATA
** *
97132374 AAATTATTAAAATACCCTTGGTTTATA
1 AAATTACCAAAATACCCCTGGTTTATA
97132401 AAATTACCAAAATACCCCTGGTTTATA
1 AAATTACCAAAATACCCCTGGTTTATA
* * **
97132428 AAATCAACAAAATACCCCTGGTTTGGA
1 AAATTACCAAAATACCCCTGGTTTATA
97132455 AAATTA
1 AAATTA
97132461 TCGCAATACC
Statistics
Matches: 75, Mismatches: 12, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 75 1.00
ACGTcount: A:0.41, C:0.18, G:0.10, T:0.31
Consensus pattern (27 bp):
AAATTACCAAAATACCCCTGGTTTATA
Found at i:97132486 original size:27 final size:27
Alignment explanation
Indices: 97132456--97133271 Score: 1024
Period size: 27 Copynumber: 30.3 Consensus size: 27
97132446 TGGTTTGGAA
* * * *
97132456 AATTATCGCAATACCCCAGTAGGATAG
1 AATTACCGGAATACCCCTGTAGGGTAG
97132483 AATTACCGGAATACCCCTGTAGGGTAG
1 AATTACCGGAATACCCCTGTAGGGTAG
*
97132510 AATTACCAGAATACCCCTGTAGGGTAG
1 AATTACCGGAATACCCCTGTAGGGTAG
*
97132537 AATTACTGGAATACCCCTGTAGGGTAG
1 AATTACCGGAATACCCCTGTAGGGTAG
*
97132564 AAATACCGGAATACCCCTGTAGGGTAG
1 AATTACCGGAATACCCCTGTAGGGTAG
97132591 AATTACCGGAATACCCCTGTAGGGTAG
1 AATTACCGGAATACCCCTGTAGGGTAG
*
97132618 AATTACCAGAATACCCCTGTAGGGTAG
1 AATTACCGGAATACCCCTGTAGGGTAG
*
97132645 AATTACTGGAATACCCCTGTAGGGTAG
1 AATTACCGGAATACCCCTGTAGGGTAG
*
97132672 AAATACCGGAATACCCCTGTAGGGTAG
1 AATTACCGGAATACCCCTGTAGGGTAG
97132699 AATTACCGGAATACCCCTGTAGGGTAG
1 AATTACCGGAATACCCCTGTAGGGTAG
*
97132726 AATTACCAGAATACCCCTGTAGGGTAG
1 AATTACCGGAATACCCCTGTAGGGTAG
*
97132753 AATTACTGGAATACCCCTGTAGGGTAG
1 AATTACCGGAATACCCCTGTAGGGTAG
*
97132780 AAATACCGGAATACCCCTGTAGGGTAG
1 AATTACCGGAATACCCCTGTAGGGTAG
97132807 AATTACCGGAATACCCCTGTAGGGTAG
1 AATTACCGGAATACCCCTGTAGGGTAG
* *
97132834 AATTACCGAAATACCCCTATAGGGTAG
1 AATTACCGGAATACCCCTGTAGGGTAG
* *
97132861 AATTACCGAAATACCCTTGTAGGGTAG
1 AATTACCGGAATACCCCTGTAGGGTAG
*
97132888 AATTACCGGAATACCCCTATAGGGTAG
1 AATTACCGGAATACCCCTGTAGGGTAG
**
97132915 AATTACCGGAATACCCCTGTAAAGTAG
1 AATTACCGGAATACCCCTGTAGGGTAG
* ** *
97132942 AATTATCACAATACCCTTGTAGGGTAG
1 AATTACCGGAATACCCCTGTAGGGTAG
**
97132969 AATTACCAAAATACCCCTGTAGGGTAG
1 AATTACCGGAATACCCCTGTAGGGTAG
* * * **
97132996 AATTACTGAAACACTACTGTAGGGTAG
1 AATTACCGGAATACCCCTGTAGGGTAG
** * *
97133023 AATTATTGAAATACCCCTGTAGGGTAA
1 AATTACCGGAATACCCCTGTAGGGTAG
* * *
97133050 AATTACCGAAATACCCTTATAGGGTAG
1 AATTACCGGAATACCCCTGTAGGGTAG
* *
97133077 AATTACTGAAATACCCCTGTAGGGTAG
1 AATTACCGGAATACCCCTGTAGGGTAG
* * * * * *
97133104 AATTGCTGAAATACCCTTATAGGGTAA
1 AATTACCGGAATACCCCTGTAGGGTAG
* *
97133131 AATTACCGAAATACCCCTATAGGGTAG
1 AATTACCGGAATACCCCTGTAGGGTAG
* ** * *
97133158 AATTATCACAAAACCCCAGTAGGGTAG
1 AATTACCGGAATACCCCTGTAGGGTAG
*** * *
97133185 AATTACTAAAATACCCCTGTATGGTAT
1 AATTACCGGAATACCCCTGTAGGGTAG
*** *
97133212 AATTACTAAAATACCCCTGTAGGGTGG
1 AATTACCGGAATACCCCTGTAGGGTAG
* * *
97133239 AATTACC-GAGATA-CCTTGTGGGGTAA
1 AATTACCGGA-ATACCCCTGTAGGGTAG
97133265 AATTACC
1 AATTACC
97133272 ATTTTGGCCC
Statistics
Matches: 699, Mismatches: 89, Indels: 3
0.88 0.11 0.00
Matches are distributed among these distances:
26 17 0.02
27 682 0.98
ACGTcount: A:0.34, C:0.20, G:0.22, T:0.24
Consensus pattern (27 bp):
AATTACCGGAATACCCCTGTAGGGTAG
Found at i:97133750 original size:22 final size:22
Alignment explanation
Indices: 97133698--97133762 Score: 87
Period size: 22 Copynumber: 3.0 Consensus size: 22
97133688 TTAAAGCCTT
*
97133698 CTGATTATGGCTTTGTGTCAAC
1 CTGATTATGGCTTTGTGCCAAC
*
97133720 CT-ACATATGGCTTTGTGCCAAC
1 CTGA-TTATGGCTTTGTGCCAAC
*
97133742 CTGATTATGGCTGTGTGCCAA
1 CTGATTATGGCTTTGTGCCAA
97133763 ACGTATTTTC
Statistics
Matches: 37, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
21 1 0.03
22 35 0.95
23 1 0.03
ACGTcount: A:0.20, C:0.22, G:0.23, T:0.35
Consensus pattern (22 bp):
CTGATTATGGCTTTGTGCCAAC
Found at i:97133951 original size:27 final size:27
Alignment explanation
Indices: 97133921--97134022 Score: 134
Period size: 27 Copynumber: 3.8 Consensus size: 27
97133911 ATTCTGTTAA
* *
97133921 GTGGCTTTGCCACATTATCTGTTTCTG
1 GTGGCTCTGCCACAATATCTGTTTCTG
*
97133948 GTGGCTATGCCACAAATATCTG-TTCTG
1 GTGGCTCTGCCAC-AATATCTGTTTCTG
*
97133975 GTGGCTCTGCCACAATATCTGTATCTG
1 GTGGCTCTGCCACAATATCTGTTTCTG
* *
97134002 GTGACTCTGTCACAATATCTG
1 GTGGCTCTGCCACAATATCTG
97134023 ATAACTGAGC
Statistics
Matches: 67, Mismatches: 6, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
26 8 0.12
27 52 0.78
28 7 0.10
ACGTcount: A:0.19, C:0.24, G:0.22, T:0.36
Consensus pattern (27 bp):
GTGGCTCTGCCACAATATCTGTTTCTG
Found at i:97134205 original size:31 final size:32
Alignment explanation
Indices: 97134159--97134224 Score: 125
Period size: 31 Copynumber: 2.1 Consensus size: 32
97134149 TTGCATTCAC
97134159 ATTCTGATTTTTGATTCTGTTACCTGATACTG
1 ATTCTGATTTTTGATTCTGTTACCTGATACTG
97134191 ATTCTGA-TTTTGATTCTGTTACCTGATACTG
1 ATTCTGATTTTTGATTCTGTTACCTGATACTG
97134222 ATT
1 ATT
97134225 NNNNNNNNNN
Statistics
Matches: 34, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
31 27 0.79
32 7 0.21
ACGTcount: A:0.20, C:0.15, G:0.15, T:0.50
Consensus pattern (32 bp):
ATTCTGATTTTTGATTCTGTTACCTGATACTG
Found at i:97139683 original size:100 final size:100
Alignment explanation
Indices: 97139510--97139706 Score: 349
Period size: 100 Copynumber: 2.0 Consensus size: 100
97139500 TTGATGAATC
*
97139510 GGATCTTCAGACCATATTTGGATCGGTTCGTAGTTGTGTTCATTGATTACATCTTGGTCTATTCA
1 GGATCTTCAGACCATATTTGGATCGGTTCGTAGTTGTGTTCATTGATGACATCTTGGTCTATTCA
97139575 AGAGATGAGACCGAACATGCTGAGCACCTGAGACT
66 AGAGATGAGACCGAACATGCTGAGCACCTGAGACT
* *
97139610 GGATCTTCAGACCGTATTTGGATCGGTTCGTAGTTGTGTTCATTGATGACATTTTGGTCTATTCA
1 GGATCTTCAGACCATATTTGGATCGGTTCGTAGTTGTGTTCATTGATGACATCTTGGTCTATTCA
* *
97139675 AGAGATGAGACCGAACATGCTGATCATCTGAG
66 AGAGATGAGACCGAACATGCTGAGCACCTGAG
97139707 GCTAGTGCTG
Statistics
Matches: 92, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
100 92 1.00
ACGTcount: A:0.24, C:0.18, G:0.25, T:0.33
Consensus pattern (100 bp):
GGATCTTCAGACCATATTTGGATCGGTTCGTAGTTGTGTTCATTGATGACATCTTGGTCTATTCA
AGAGATGAGACCGAACATGCTGAGCACCTGAGACT
Found at i:97142806 original size:40 final size:40
Alignment explanation
Indices: 97142747--97143218 Score: 847
Period size: 40 Copynumber: 11.8 Consensus size: 40
97142737 CATTTGAATG
* * *
97142747 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAG-TGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGA-T
* *
97142787 TTATCCGAGCTAAGACCCGAAGGCATTTGTGCGAGTTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGAT
97142827 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGAT
97142867 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGAT
97142907 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGAT
97142947 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGAT
97142987 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGAT
97143027 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGAT
97143067 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGAT
97143107 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGAT
*
97143147 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGAT
* * *
97143187 ATACCCGGGTTAAGACCCGAAGGCAATTGTGC
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGC
97143219 TTGTGGTTAT
Statistics
Matches: 420, Mismatches: 11, Indels: 2
0.97 0.03 0.00
Matches are distributed among these distances:
40 417 0.99
41 3 0.01
ACGTcount: A:0.25, C:0.21, G:0.29, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGAT
Found at i:97147856 original size:71 final size:71
Alignment explanation
Indices: 97147781--97147926 Score: 283
Period size: 71 Copynumber: 2.1 Consensus size: 71
97147771 AAATTATGTC
97147781 ATAAGAGGTGTAGATTAGAAAATATTTGTGTTTAAACCTTTGCAGCCGTAAAATTATTTTAATTT
1 ATAAGAGGTGTAGATTAGAAAATATTTGTGTTTAAACCTTTGCAGCCGTAAAATTATTTTAATTT
97147846 GACATT
66 GACATT
*
97147852 ATAAGAGGTGTAGATTAGAAAATGTTTGTGTTTAAACCTTTGCAGCCGTAAAATTATTTTAATTT
1 ATAAGAGGTGTAGATTAGAAAATATTTGTGTTTAAACCTTTGCAGCCGTAAAATTATTTTAATTT
97147917 GACATT
66 GACATT
97147923 ATAA
1 ATAA
97147927 TATTTTTTTT
Statistics
Matches: 74, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
71 74 1.00
ACGTcount: A:0.36, C:0.08, G:0.17, T:0.39
Consensus pattern (71 bp):
ATAAGAGGTGTAGATTAGAAAATATTTGTGTTTAAACCTTTGCAGCCGTAAAATTATTTTAATTT
GACATT
Found at i:97153979 original size:40 final size:40
Alignment explanation
Indices: 97153556--97153942 Score: 688
Period size: 40 Copynumber: 9.7 Consensus size: 40
97153546 ATTTGAATGA
97153556 TATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTT
1 TATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTT
97153596 TATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTT
1 TATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTT
97153636 TATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTT
1 TATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTT
97153676 TATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTT
1 TATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTT
97153716 TATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTT
1 TATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTT
*
97153756 TATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTA
1 TATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTT
97153796 TATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTT
1 TATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTT
97153836 TATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTT
1 TATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTT
* * * *
97153876 TATCCGAGCTAAGACCCGAAGGCATTTGTG-TGAGTTGA-TA
1 TATCCGGGCTAAGTCCCGAAGGCATTTATGCT-AG-TGATTT
*
97153916 TATCCGGGCTAAGACCCGAAGGCATTT
1 TATCCGGGCTAAGTCCCGAAGGCATTT
97153943 GTGCGAGTTG
Statistics
Matches: 338, Mismatches: 7, Indels: 4
0.97 0.02 0.01
Matches are distributed among these distances:
39 1 0.00
40 334 0.99
41 3 0.01
ACGTcount: A:0.24, C:0.20, G:0.25, T:0.31
Consensus pattern (40 bp):
TATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTT
Found at i:97153985 original size:40 final size:40
Alignment explanation
Indices: 97153559--97153986 Score: 323
Period size: 40 Copynumber: 10.7 Consensus size: 40
97153549 TGAATGATAT
* * * * *
97153559 CCGGGCTAAGTCCCGAAGGCATTTATGCTAG-TGATTTTAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGA-TATAC
* * * * *
97153599 CCGGGCTAAGTCCCGAAGGCATTTATGCTAG-TGATTTTAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGA-TATAC
* * * * *
97153639 CCGGGCTAAGTCCCGAAGGCATTTATGCTAG-TGATTTTAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGA-TATAC
* * * * *
97153679 CCGGGCTAAGTCCCGAAGGCATTTATGCTAG-TGATTTTAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGA-TATAC
* * * * *
97153719 CCGGGCTAAGTCCCGAAGGCATTTATGCTAG-TGATTTTAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGA-TATAC
* * * *
97153759 CCGGGCTAAGTCCCGAAGGCATTTATGCTAG-TGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGA-TATAC
* * * * *
97153799 CCGGGCTAAGTCCCGAAGGCATTTATGCTAG-TGATTTTAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGA-TATAC
* * * * *
97153839 CCGGGCTAAGTCCCGAAGGCATTTATGCTAG-TGATTTTAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGA-TATAC
* * *
97153879 CCGAGCTAAGACCCGAAGGCATTTGTGTGAGTTGATATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATATAC
*
97153919 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAC
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATATAC
* *
97153959 CCGGGTTAAGACCCGAAGGCAATTGTGC
1 CCGGGCTAAGACCCGAAGGCATTTGTGC
97153987 TTGTGGTTAT
Statistics
Matches: 373, Mismatches: 14, Indels: 2
0.96 0.04 0.01
Matches are distributed among these distances:
40 370 0.99
41 3 0.01
ACGTcount: A:0.23, C:0.21, G:0.26, T:0.30
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATATAC
Found at i:97159150 original size:27 final size:27
Alignment explanation
Indices: 97159119--97159295 Score: 203
Period size: 27 Copynumber: 6.5 Consensus size: 27
97159109 TAAATTGTAC
97159119 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
97159146 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
97159172 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
97159200 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
97159228 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
97159255 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
97159282 AGCACTGAGTGTGC
1 AGCACTAAGTGTGC
97159296 AGGCTCAATA
Statistics
Matches: 128, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 105 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:97159233 original size:82 final size:81
Alignment explanation
Indices: 97159120--97159275 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
97159110 AAATTGTACA
* *
97159120 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
97159184 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
97159201 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
97159266 TGCGAGTTGA
65 TGCGAATTGA
97159276 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:97159287 original size:82 final size:81
Alignment explanation
Indices: 97159116--97159295 Score: 227
Period size: 82 Copynumber: 2.2 Consensus size: 81
97159106 GATTAAATTG
* *
97159116 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
97159181 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
97159197 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
97159261 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
97159279 TATAGCACTGAGTGTGC
1 TACAGCACTAAGTGTGC
97159296 AGGCTCAATA
Statistics
Matches: 83, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.22
82 65 0.78
ACGTcount: A:0.27, C:0.16, G:0.27, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:97161721 original size:20 final size:20
Alignment explanation
Indices: 97161696--97161741 Score: 60
Period size: 20 Copynumber: 2.4 Consensus size: 20
97161686 ATTGGGCCTT
97161696 GCCCATATT-AACACAGTTGG
1 GCCCATATTCAACACAGTT-G
*
97161716 GCCCAT-TTCAATACAGTTG
1 GCCCATATTCAACACAGTTG
97161735 GCCCATA
1 GCCCATA
97161742 ACAAAACAGC
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
19 9 0.39
20 14 0.61
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.26
Consensus pattern (20 bp):
GCCCATATTCAACACAGTTG
Found at i:97161750 original size:19 final size:20
Alignment explanation
Indices: 97161708--97161750 Score: 52
Period size: 19 Copynumber: 2.2 Consensus size: 20
97161698 CCATATTAAC
** *
97161708 ACAGTTGGGCCCATTTCAAT
1 ACAGTTGGGCCCATAACAAA
97161728 ACAGTT-GGCCCATAACAAA
1 ACAGTTGGGCCCATAACAAA
97161747 ACAG
1 ACAG
97161751 CCTCATATGA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
19 14 0.70
20 6 0.30
ACGTcount: A:0.35, C:0.26, G:0.19, T:0.21
Consensus pattern (20 bp):
ACAGTTGGGCCCATAACAAA
Found at i:97170799 original size:53 final size:53
Alignment explanation
Indices: 97170737--97170843 Score: 178
Period size: 53 Copynumber: 2.0 Consensus size: 53
97170727 CAGCCCATCA
* * * *
97170737 CTTGCACCGCTTCTGCATGCTGTAAAGAGTCTTGATCAGACCCCAACTCTTTC
1 CTTGCACCGCTTCAGCATGCTCTAAAGAGTCCTGATCAGACCCAAACTCTTTC
97170790 CTTGCACCGCTTCAGCATGCTCTAAAGAGTCCTGATCAGACCCAAACTCTTTC
1 CTTGCACCGCTTCAGCATGCTCTAAAGAGTCCTGATCAGACCCAAACTCTTTC
97170843 C
1 C
97170844 CCACGCGTGC
Statistics
Matches: 50, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
53 50 1.00
ACGTcount: A:0.22, C:0.34, G:0.16, T:0.28
Consensus pattern (53 bp):
CTTGCACCGCTTCAGCATGCTCTAAAGAGTCCTGATCAGACCCAAACTCTTTC
Found at i:97171702 original size:19 final size:18
Alignment explanation
Indices: 97171665--97171708 Score: 54
Period size: 19 Copynumber: 2.4 Consensus size: 18
97171655 ATACATACAG
97171665 TAAT-ATTTTTCTAATAA
1 TAATAATTTTTCTAATAA
*
97171682 TAATAATTTTATCTCATAA
1 TAATAATTTT-TCTAATAA
*
97171701 TACTAATT
1 TAATAATT
97171709 AAAATTTCAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
17 4 0.17
18 5 0.22
19 14 0.61
ACGTcount: A:0.41, C:0.09, G:0.00, T:0.50
Consensus pattern (18 bp):
TAATAATTTTTCTAATAA
Found at i:97174877 original size:19 final size:19
Alignment explanation
Indices: 97174853--97174895 Score: 59
Period size: 19 Copynumber: 2.3 Consensus size: 19
97174843 ATACATATAG
*
97174853 TAATTTTTTCTAATAATAA
1 TAATTTTATCTAATAATAA
* *
97174872 TAATTTTATCTCATAATAC
1 TAATTTTATCTAATAATAA
97174891 TAATT
1 TAATT
97174896 AAAATTTCAT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.40, C:0.09, G:0.00, T:0.51
Consensus pattern (19 bp):
TAATTTTATCTAATAATAA
Found at i:97181236 original size:43 final size:41
Alignment explanation
Indices: 97181156--97181270 Score: 99
Period size: 43 Copynumber: 2.7 Consensus size: 41
97181146 TGGCATCATG
* *
97181156 TAAGACCGTGTCTGGGACACAGGCCTCGATTGAGATTTACGTA
1 TAAGACCATGTCTGGGACACAGGCATCGATT-AGATTT-CGTA
*
97181199 TAAGACCATGTCTGGGACATC-GGCATCGTATCT-GATTTCGTG
1 TAAGACCATGTCTGGGACA-CAGGCATCG-AT-TAGATTTCGTA
* * * * *
97181241 TAAAACCCTGTCTGAGAAAGAGGCATCGAT
1 TAAGACCATGTCTGGGACACAGGCATCGAT
97181271 ATTGAATTAC
Statistics
Matches: 60, Mismatches: 8, Indels: 10
0.77 0.10 0.13
Matches are distributed among these distances:
41 2 0.03
42 25 0.42
43 29 0.48
44 3 0.05
45 1 0.02
ACGTcount: A:0.27, C:0.21, G:0.26, T:0.26
Consensus pattern (41 bp):
TAAGACCATGTCTGGGACACAGGCATCGATTAGATTTCGTA
Found at i:97183638 original size:40 final size:40
Alignment explanation
Indices: 97183581--97183845 Score: 313
Period size: 40 Copynumber: 6.7 Consensus size: 40
97183571 CTAACGGGGT
* * * *
97183581 TAAGTCCCGAAGACATTTGTGCTAGTGATAAATTTCGGGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTTATAAATTCCGGGC
*
97183621 TAAGTCCCGAAGGCATTTGTGCGAGTTACAAATTCCGGGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTTATAAATTCCGGGC
*
97183661 TAAGTCCCGAAGGCAGTTGTGCGAGTTACT-AATTCCGGGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTTA-TAAATTCCGGGC
* *
97183701 TAAGTCCCGAAGGCTTTTGTGCGAGTTACAAATTCCGGGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTTATAAATTCCGGGC
* *
97183741 TAAGCCCCGAAGGCATTTGTGCGAGTTAT-TATATCCGGGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTTATAAAT-TCCGGGC
* * * * * *
97183781 AAAGTCCCGAAGGCATTTGTGCTAGTGACCATATT-CGGAC
1 TAAGTCCCGAAGGCATTTGTGCGAGTTA-TAAATTCCGGGC
* *
97183821 TAAGACCCGAAGGC-CTTGTGCGAGT
1 TAAGTCCCGAAGGCATTTGTGCGAGT
97183846 GGTTATATCC
Statistics
Matches: 196, Mismatches: 24, Indels: 11
0.85 0.10 0.05
Matches are distributed among these distances:
39 11 0.06
40 181 0.92
41 1 0.01
42 3 0.02
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
TAAGTCCCGAAGGCATTTGTGCGAGTTATAAATTCCGGGC
Found at i:97183714 original size:80 final size:79
Alignment explanation
Indices: 97183581--97183845 Score: 345
Period size: 80 Copynumber: 3.3 Consensus size: 79
97183571 CTAACGGGGT
* * * *
97183581 TAAGTCCCGAAGACATTTGTGCTAGTGATAAATTTCGGGCTAAGTCCCGAAGGCATTTGTGCGAG
1 TAAGTCCCGAAGGCATTTGTGCGAGTTAT-AATTCCGGGCTAAGTCCCGAAGGCATTTGTGCGAG
97183646 TTACAAATTCCGGGC
65 TTACAAATTCCGGGC
* *
97183661 TAAGTCCCGAAGGCAGTTGTGCGAGTTACTAATTCCGGGCTAAGTCCCGAAGGCTTTTGTGCGAG
1 TAAGTCCCGAAGGCATTTGTGCGAGTTA-TAATTCCGGGCTAAGTCCCGAAGGCATTTGTGCGAG
97183726 TTACAAATTCCGGGC
65 TTACAAATTCCGGGC
* * * *
97183741 TAAGCCCCGAAGGCATTTGTGCGAGTTATTATATCCGGGCAAAGTCCCGAAGGCATTTGTGCTAG
1 TAAGTCCCGAAGGCATTTGTGCGAGTTATAAT-TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAG
* * *
97183806 TGACCATATT-CGGAC
65 TTA-CAAATTCCGGGC
* *
97183821 TAAGACCCGAAGGC-CTTGTGCGAGT
1 TAAGTCCCGAAGGCATTTGTGCGAGT
97183846 GGTTATATCC
Statistics
Matches: 165, Mismatches: 17, Indels: 7
0.87 0.09 0.04
Matches are distributed among these distances:
79 13 0.08
80 146 0.88
81 6 0.04
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.26
Consensus pattern (79 bp):
TAAGTCCCGAAGGCATTTGTGCGAGTTATAATTCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT
TACAAATTCCGGGC
Found at i:97191923 original size:40 final size:40
Alignment explanation
Indices: 97191844--97192068 Score: 233
Period size: 40 Copynumber: 5.7 Consensus size: 40
97191834 CTAACGGGGT
* * *
97191844 TAAGTCCCGAAGACATTTGTGCTAGTGA-TAAATTCCGGGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTTACT-AATTCCGGGC
* *
97191884 TAAGTCCCGAAGGCATTGGTGCGAGTTACTAATTTCGGGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCCGGGC
* * *
97191924 TAAGTCCCGAAGGCTTTTGTGCGAGTTACAAATTTCGGGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCCGGGC
* * *
97191964 TAAGCCCCGAAGGCATTTGTGCAAGTTA-TTATATCCGGGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT-TCCGGGC
* * * * *
97192004 TAAGTCCTGAAGGCATTTGTGCTAGTGAC-CATATCCGGAC
1 TAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT-TCCGGGC
* *
97192044 TAAGACCCGAAGGC-CTTGTGCGAGT
1 TAAGTCCCGAAGGCATTTGTGCGAGT
97192069 GGTTATATCC
Statistics
Matches: 158, Mismatches: 24, Indels: 7
0.84 0.13 0.04
Matches are distributed among these distances:
39 11 0.07
40 146 0.92
41 1 0.01
ACGTcount: A:0.24, C:0.21, G:0.27, T:0.27
Consensus pattern (40 bp):
TAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCCGGGC
Found at i:97191977 original size:80 final size:79
Alignment explanation
Indices: 97191844--97192093 Score: 272
Period size: 80 Copynumber: 3.2 Consensus size: 79
97191834 CTAACGGGGT
* * *
97191844 TAAGTCCCGAAGACATTTGTGCTAGTGATAAATTCCGGGCTAAGTCCCGAAGGCATTGGTGCGAG
1 TAAGTCCCGAAGGCATTTGTGCTAGTGACAAATTCCGGGCTAAGACCCGAAGGCATT-GTGCGAG
*
97191909 TTACTAAT-TTCGGGC
65 TTA-TAATATCCGGGC
* * * * * *
97191924 TAAGTCCCGAAGGCTTTTGTGCGAGTTACAAATTTCGGGCTAAGCCCCGAAGGCATTTGTGCAAG
1 TAAGTCCCGAAGGCATTTGTGCTAGTGACAAATTCCGGGCTAAGACCCGAAGGCA-TTGTGCGAG
*
97191989 TTATTATATCCGGGC
65 TTATAATATCCGGGC
* * * *
97192004 TAAGTCCTGAAGGCATTTGTGCTAGTGAC-CATATCCGGACTAAGACCCGAAGGCCTTGTGCGAG
1 TAAGTCCCGAAGGCATTTGTGCTAGTGACAAAT-TCCGGGCTAAGACCCGAAGGCATTGTGCGAG
** *
97192068 TGGTTATATCC-GGC
65 TTATAATATCCGGGC
*
97192082 TAAATCCCGAAG
1 TAAGTCCCGAAG
97192094 ATAATTGGGT
Statistics
Matches: 143, Mismatches: 24, Indels: 8
0.82 0.14 0.05
Matches are distributed among these distances:
78 13 0.09
79 22 0.15
80 106 0.74
81 2 0.01
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.27
Consensus pattern (79 bp):
TAAGTCCCGAAGGCATTTGTGCTAGTGACAAATTCCGGGCTAAGACCCGAAGGCATTGTGCGAGT
TATAATATCCGGGC
Found at i:97200266 original size:43 final size:42
Alignment explanation
Indices: 97200165--97200267 Score: 104
Period size: 43 Copynumber: 2.4 Consensus size: 42
97200155 GATTTATGTA
* * *
97200165 TAAGACCATGTCTGGGATATCAGCATCGTATCTAATTTCATG
1 TAAGACCACGTCTGGGACATCAGCATCGTATCTAATTACATG
* *
97200207 TAAGACC-CTGTTTGGGACA-GAGGCATCGATAT-TGAATTACATG
1 TAAGACCAC-GTCTGGGACATCA-GCATCG-TATCT-AATTACATG
97200250 TAAGACCACGTCTGGGAC
1 TAAGACCACGTCTGGGAC
97200268 GTCGGCATTG
Statistics
Matches: 50, Mismatches: 6, Indels: 9
0.77 0.09 0.14
Matches are distributed among these distances:
41 1 0.02
42 22 0.44
43 26 0.52
44 1 0.02
ACGTcount: A:0.29, C:0.19, G:0.23, T:0.28
Consensus pattern (42 bp):
TAAGACCACGTCTGGGACATCAGCATCGTATCTAATTACATG
Found at i:97204448 original size:40 final size:40
Alignment explanation
Indices: 97204403--97204747 Score: 539
Period size: 40 Copynumber: 8.6 Consensus size: 40
97204393 CAAGCTCAAT
* * * * *
97204403 TGCCTTCGGGTCTTAACCCGGGTATAGCAACTCGCACGAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
*
97204443 TGCCTTCGGGTCTTAGCCCGGATATATCAACTT-GCACAAT
1 TGCCTTCGGGTCTTAGCCCGGATATATCAA-TTCGCACAAA
97204483 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
* * *
97204523 CGCCATCGGGTCTTAGCCCGGATATATCAGTTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
* *
97204563 TGCCTTCGGGTCTTATCCCAGATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
*
97204603 TGCCTTCGGGTCTTATCCCGGATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
*
97204643 TGCCTTCAGGTCTTAGCCCGGATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
* *
97204683 TGCCTTCGGGTCTAAACCCGGATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
97204723 TGCCTTCGGGTCTTAGCCCGGATAT
1 TGCCTTCGGGTCTTAGCCCGGATAT
97204748 CATTCAAATG
Statistics
Matches: 280, Mismatches: 23, Indels: 4
0.91 0.07 0.01
Matches are distributed among these distances:
39 2 0.01
40 277 0.99
41 1 0.00
ACGTcount: A:0.25, C:0.28, G:0.20, T:0.27
Consensus pattern (40 bp):
TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
Found at i:97218883 original size:27 final size:27
Alignment explanation
Indices: 97218845--97218938 Score: 84
Period size: 27 Copynumber: 3.5 Consensus size: 27
97218835 AATGGCAAAA
* * *
97218845 CAGTCATTTTACCCTACAGGGGTATTT
1 CAGTAATTTTACACTACAAGGGTATTT
*
97218872 C-GATAATTTTACACTATAAGGGTATTT
1 CAG-TAATTTTACACTACAAGGGTATTT
* * *
97218899 CAGTAATTTTACA-AATCGAGAGTATTT
1 CAGTAATTTTACACTA-CAAGGGTATTT
*
97218926 CAGAAATTTTACA
1 CAGTAATTTTACA
97218939 AGTCGGGAGT
Statistics
Matches: 55, Mismatches: 9, Indels: 6
0.79 0.13 0.09
Matches are distributed among these distances:
26 2 0.04
27 52 0.95
28 1 0.02
ACGTcount: A:0.33, C:0.15, G:0.15, T:0.37
Consensus pattern (27 bp):
CAGTAATTTTACACTACAAGGGTATTT
Found at i:97218951 original size:54 final size:54
Alignment explanation
Indices: 97218893--97218996 Score: 140
Period size: 54 Copynumber: 1.9 Consensus size: 54
97218883 CACTATAAGG
*
97218893 GTATTTCAG-TAATTTTACAAATC-GAGAGTATTTCAGAAATTTTACAAGTCGGGA
1 GTATTT-AGATAATTTCACAAATCAGAGA-TATTTCAGAAATTTTACAAGTCGGGA
* * *
97218947 GTATTTTGATAATTTCACAAATCAGGGATATTTCAGTAATTTTACAAGTC
1 GTATTTAGATAATTTCACAAATCAGAGATATTTCAGAAATTTTACAAGTC
97218997 AGGGGTCTTA
Statistics
Matches: 44, Mismatches: 4, Indels: 4
0.85 0.08 0.08
Matches are distributed among these distances:
53 1 0.02
54 40 0.91
55 3 0.07
ACGTcount: A:0.35, C:0.12, G:0.16, T:0.38
Consensus pattern (54 bp):
GTATTTAGATAATTTCACAAATCAGAGATATTTCAGAAATTTTACAAGTCGGGA
Found at i:97218998 original size:27 final size:28
Alignment explanation
Indices: 97218861--97219000 Score: 125
Period size: 27 Copynumber: 5.2 Consensus size: 28
97218851 TTTTACCCTA
*
97218861 CAGGG-GTATTTC-GATAATTTTACACTAT
1 CAGGGAGTATTTCAG-TAATTTTACA-AAT
*
97218889 -AAGG-GTATTTCAGTAATTTTACAAAT
1 CAGGGAGTATTTCAGTAATTTTACAAAT
* * *
97218915 C-GAGAGTATTTCAGAAATTTTACAAGT
1 CAGGGAGTATTTCAGTAATTTTACAAAT
* *
97218942 C-GGGAGTATTT-TGATAATTTCACAAAT
1 CAGGGAGTATTTCAG-TAATTTTACAAAT
*
97218969 CAGGGA-TATTTCAGTAATTTTACAAGT
1 CAGGGAGTATTTCAGTAATTTTACAAAT
97218996 CAGGG
1 CAGGG
97219001 GTCTTAATGA
Statistics
Matches: 92, Mismatches: 14, Indels: 13
0.77 0.12 0.11
Matches are distributed among these distances:
26 4 0.04
27 82 0.89
28 6 0.07
ACGTcount: A:0.34, C:0.11, G:0.19, T:0.36
Consensus pattern (28 bp):
CAGGGAGTATTTCAGTAATTTTACAAAT
Found at i:97227516 original size:46 final size:46
Alignment explanation
Indices: 97227398--97227525 Score: 193
Period size: 46 Copynumber: 2.8 Consensus size: 46
97227388 ATTTGGGCAT
* * *
97227398 CCGAGCTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCGAATGT
1 CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
97227444 CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
1 CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
* ** *
97227490 CCGAGCTCATTGAGTTGAGTTTGAGTTCGCTTATGG
1 CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
97227526 GCGGGTTACA
Statistics
Matches: 75, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
46 75 1.00
ACGTcount: A:0.20, C:0.20, G:0.30, T:0.30
Consensus pattern (46 bp):
CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
Found at i:97234631 original size:16 final size:16
Alignment explanation
Indices: 97234612--97234644 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
97234602 CTATCAACAA
97234612 AGGCACAACTCAAAAT
1 AGGCACAACTCAAAAT
97234628 AGGCACAACTCAAAAT
1 AGGCACAACTCAAAAT
97234644 A
1 A
97234645 TTCATCAAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.52, C:0.24, G:0.12, T:0.12
Consensus pattern (16 bp):
AGGCACAACTCAAAAT
Found at i:97253156 original size:20 final size:20
Alignment explanation
Indices: 97253100--97253150 Score: 57
Period size: 22 Copynumber: 2.5 Consensus size: 20
97253090 TGAAATTATG
* *
97253100 AATTTTAATTAATTTTGTAGTT
1 AATTTTGATTAAATTTG--GTT
97253122 AATTTTGATTAAATTTGGTT
1 AATTTTGATTAAATTTGGTT
*
97253142 ATTTTTGAT
1 AATTTTGAT
97253151 AGAATTACAC
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
20 11 0.42
22 15 0.58
ACGTcount: A:0.29, C:0.00, G:0.12, T:0.59
Consensus pattern (20 bp):
AATTTTGATTAAATTTGGTT
Found at i:97255290 original size:93 final size:92
Alignment explanation
Indices: 97255132--97255301 Score: 259
Period size: 93 Copynumber: 1.8 Consensus size: 92
97255122 AGGATTTTTG
* * * * * *
97255132 GGCATTCGAACTTGTTGAGTTAGTCCGAGTTCACTTATGGATGCGAATGTCTGAACTCGTTGAGT
1 GGCATCCGAACTCGTTGAGTTAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCATTGAGT
*
97255197 TGAGTCTGAGTTTGAGAGATGTAACTA
66 TGAGTCCGAGTTTGAGAGATGTAACTA
*
97255224 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCATTGAG
1 GGCATCCGAACTCGTTGAGTT-AGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCATTGAG
97255289 TTGAGTCCGAGTT
65 TTGAGTCCGAGTT
97255302 CACTTAGGGG
Statistics
Matches: 69, Mismatches: 8, Indels: 1
0.88 0.10 0.01
Matches are distributed among these distances:
92 19 0.28
93 50 0.72
ACGTcount: A:0.22, C:0.18, G:0.29, T:0.31
Consensus pattern (92 bp):
GGCATCCGAACTCGTTGAGTTAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCATTGAGT
TGAGTCCGAGTTTGAGAGATGTAACTA
Found at i:97264021 original size:33 final size:33
Alignment explanation
Indices: 97263969--97264035 Score: 89
Period size: 33 Copynumber: 2.0 Consensus size: 33
97263959 TTGGGCCCAC
* *
97263969 TCTGCTACTGTATAGGGCTAAAGCCCAGACTGT
1 TCTGCTACTGAATAAGGCTAAAGCCCAGACTGT
* **
97264002 TCTGTTACTGAATAAGGCTACGGCCCAGACTGT
1 TCTGCTACTGAATAAGGCTAAAGCCCAGACTGT
97264035 T
1 T
97264036 TTGCATATTC
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
33 29 1.00
ACGTcount: A:0.24, C:0.24, G:0.24, T:0.28
Consensus pattern (33 bp):
TCTGCTACTGAATAAGGCTAAAGCCCAGACTGT
Found at i:97270424 original size:28 final size:28
Alignment explanation
Indices: 97270371--97270454 Score: 132
Period size: 28 Copynumber: 3.0 Consensus size: 28
97270361 CACTTTGTGC
97270371 TATTCTGGTGTGTTTTGGATGGATTATAT
1 TATTCTGGTGTGTTTTGGA-GGATTATAT
*
97270400 TATTCTGGTGTGTTTGGGAGGATTATAT
1 TATTCTGGTGTGTTTTGGAGGATTATAT
* *
97270428 GATACTGGTGTGTTTTGGAGGATTATA
1 TATTCTGGTGTGTTTTGGAGGATTATA
97270455 CTGGTGTGTT
Statistics
Matches: 51, Mismatches: 4, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
28 33 0.65
29 18 0.35
ACGTcount: A:0.19, C:0.04, G:0.31, T:0.46
Consensus pattern (28 bp):
TATTCTGGTGTGTTTTGGAGGATTATAT
Found at i:97270466 original size:23 final size:24
Alignment explanation
Indices: 97270375--97270468 Score: 91
Period size: 28 Copynumber: 3.6 Consensus size: 24
97270365 TTGTGCTATT
97270375 CTGGTGTGTTTTGGATGGATTATATTA
1 CTGGTGTGTTTTGGA-GGA-TATA-TA
*
97270402 TTCTGGTGTGTTTGGGAGGATTATATGATA
1 --CTGGTGTGTTTTGGAGG---ATAT-ATA
97270432 CTGGTGTGTTTTGGAGGAT-TATA
1 CTGGTGTGTTTTGGAGGATATATA
97270455 CTGGTGTGTTTTGG
1 CTGGTGTGTTTTGG
97270469 TTGGACATTT
Statistics
Matches: 59, Mismatches: 2, Indels: 14
0.79 0.03 0.19
Matches are distributed among these distances:
23 17 0.29
24 1 0.02
25 2 0.03
28 18 0.31
29 14 0.24
30 5 0.08
31 2 0.03
ACGTcount: A:0.16, C:0.04, G:0.34, T:0.46
Consensus pattern (24 bp):
CTGGTGTGTTTTGGAGGATATATA
Found at i:97270689 original size:23 final size:23
Alignment explanation
Indices: 97270659--97270744 Score: 92
Period size: 21 Copynumber: 4.0 Consensus size: 23
97270649 GCTATACTGA
*
97270659 TCAGGCACTTTATGTGTCGTATT
1 TCAGGCACCTTATGTGTCGTATT
*
97270682 TCAGGCACCTTGTGTGTCGTA--
1 TCAGGCACCTTATGTGTCGTATT
** *
97270703 TCAGGCACCTCGTGTGTTGT-TT
1 TCAGGCACCTTATGTGTCGTATT
97270725 T-AGGCA-CTTATGTGTCGTAT
1 TCAGGCACCTTATGTGTCGTAT
97270745 ACTGATCAGG
Statistics
Matches: 53, Mismatches: 7, Indels: 8
0.78 0.10 0.12
Matches are distributed among these distances:
20 9 0.17
21 24 0.45
22 1 0.02
23 19 0.36
ACGTcount: A:0.15, C:0.20, G:0.26, T:0.40
Consensus pattern (23 bp):
TCAGGCACCTTATGTGTCGTATT
Found at i:97278652 original size:38 final size:41
Alignment explanation
Indices: 97278548--97278656 Score: 127
Period size: 43 Copynumber: 2.7 Consensus size: 41
97278538 AGCTCGTACA
*
97278548 ATGCCAACGTCCCAGACGAGGTCTTACATGTAATCAAATATCG
1 ATGCCAACGTCCCAGACGAGGTCTTACACG-AA-CAAATATCG
*
97278591 ATGCC-ACTGTCCCAGACAAGGTCTTACACG-A-AAATAT-G
1 ATGCCAAC-GTCCCAGACGAGGTCTTACACGAACAAATATCG
* *
97278629 ATGCCAACGTCCTAGACGTGGTCTTACA
1 ATGCCAACGTCCCAGACGAGGTCTTACA
97278657 TATAAATCAT
Statistics
Matches: 59, Mismatches: 5, Indels: 9
0.81 0.07 0.12
Matches are distributed among these distances:
38 23 0.39
39 8 0.14
41 1 0.02
42 2 0.03
43 25 0.42
ACGTcount: A:0.31, C:0.27, G:0.19, T:0.23
Consensus pattern (41 bp):
ATGCCAACGTCCCAGACGAGGTCTTACACGAACAAATATCG
Found at i:97283927 original size:16 final size:15
Alignment explanation
Indices: 97283896--97283929 Score: 50
Period size: 16 Copynumber: 2.2 Consensus size: 15
97283886 TTCCATTTTG
*
97283896 TTTCTTATTTTTATT
1 TTTCTTATTATTATT
97283911 TTTCTTCATTATTATT
1 TTTCTT-ATTATTATT
97283927 TTT
1 TTT
97283930 GCATGATTGA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 6 0.35
16 11 0.65
ACGTcount: A:0.15, C:0.09, G:0.00, T:0.76
Consensus pattern (15 bp):
TTTCTTATTATTATT
Found at i:97288278 original size:21 final size:22
Alignment explanation
Indices: 97288253--97288307 Score: 60
Period size: 21 Copynumber: 2.5 Consensus size: 22
97288243 GACCATTGAG
* *
97288253 TTTATTTATTTTCTTTTTA-GT
1 TTTATTTATTTTATGTTTATGT
97288274 TTTATTT-TTTTATGTTTATGT
1 TTTATTTATTTTATGTTTATGT
*
97288295 TTATTTTTATTTT
1 TT-TATTTATTTT
97288308 TAGTTCTTTT
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
20 9 0.32
21 11 0.39
22 4 0.14
23 4 0.14
ACGTcount: A:0.15, C:0.02, G:0.05, T:0.78
Consensus pattern (22 bp):
TTTATTTATTTTATGTTTATGT
Found at i:97288284 original size:20 final size:20
Alignment explanation
Indices: 97288252--97288302 Score: 59
Period size: 20 Copynumber: 2.5 Consensus size: 20
97288242 GGACCATTGA
* *
97288252 GTTTATTTATTTTCTTTTTA-
1 GTTTATTT-TTTTATGTTTAT
97288272 GTTTTATTTTTTTATGTTTAT
1 G-TTTATTTTTTTATGTTTAT
97288293 GTTTATTTTT
1 GTTTATTTTT
97288303 ATTTTTAGTT
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
20 19 0.70
21 8 0.30
ACGTcount: A:0.14, C:0.02, G:0.08, T:0.76
Consensus pattern (20 bp):
GTTTATTTTTTTATGTTTAT
Found at i:97288303 original size:32 final size:31
Alignment explanation
Indices: 97288257--97288322 Score: 80
Period size: 32 Copynumber: 2.1 Consensus size: 31
97288247 ATTGAGTTTA
* *
97288257 TTTATTTTCTTTTTAGTTTTA-TTTTTTTATG
1 TTTATTTTATTTTTAGTTTTAGTTCTTTT-TG
*
97288288 TTTATGTTTATTTTTATTTTTAGTTCTTTTTG
1 TTTAT-TTTATTTTTAGTTTTAGTTCTTTTTG
97288320 TTT
1 TTT
97288323 TCTTAGACTT
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
31 5 0.17
32 19 0.63
33 6 0.20
ACGTcount: A:0.12, C:0.03, G:0.08, T:0.77
Consensus pattern (31 bp):
TTTATTTTATTTTTAGTTTTAGTTCTTTTTG
Found at i:97295276 original size:28 final size:28
Alignment explanation
Indices: 97295229--97295285 Score: 89
Period size: 28 Copynumber: 2.0 Consensus size: 28
97295219 AAATGAGTCG
*
97295229 TATGATCGGGCCGCGAGGGACGACGCTC
1 TATGATCGGGCCACGAGGGACGACGCTC
97295257 TATGATCGGGCCAC-AGGGGACGACGCTC
1 TATGATCGGGCCACGA-GGGACGACGCTC
97295285 T
1 T
97295286 GTCCCAGGCC
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
27 1 0.04
28 26 0.96
ACGTcount: A:0.19, C:0.28, G:0.37, T:0.16
Consensus pattern (28 bp):
TATGATCGGGCCACGAGGGACGACGCTC
Found at i:97300570 original size:40 final size:40
Alignment explanation
Indices: 97300466--97300669 Score: 290
Period size: 40 Copynumber: 5.2 Consensus size: 40
97300456 AAACCAAGTA
* * *
97300466 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* *
97300505 TCTTCGGGAC-TAGCCCGGTTATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
97300544 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
97300584 CCTTCGGGACTTTGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
97300624 CCTTCGGGACTTAGCCCGGA-ATTAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
97300664 CCTTCG
1 CCTTCG
97300670 TTATCATCCA
Statistics
Matches: 150, Mismatches: 11, Indels: 7
0.89 0.07 0.04
Matches are distributed among these distances:
38 3 0.02
39 39 0.26
40 108 0.72
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:97304384 original size:68 final size:64
Alignment explanation
Indices: 97304268--97304526 Score: 226
Period size: 68 Copynumber: 3.9 Consensus size: 64
97304258 TGGATGATAC
** * * *
97304268 AGATAGTATGTAGCTAGGTCACATGTATGGTGCTGAGTGCACATCATGT-GTACAAGAGAGCTAC
1 AGATA-TATGTAGCTAGGTCACATGGGTGGTACTGAGTGTACACCATGTAG-ACAAGAGAGCTAC
97304332 A
64 A
*
97304333 AGACATTATGATGTAGCTAGGTCACATGGGTGATACT-ATGTGTACACCATGTAGACAAGAGAGC
1 AG--A-TAT-ATGTAGCTAGGTCACATGGGTGGTACTGA-GTGTACACCATGTAGACAAGAGAGC
*
97304397 TACG
61 TACA
* * *
97304401 GGATATATGTAGCTAGGTCACATGCGTGGTTCCAGGTGAAG-G-ACACCATGTAGACAAGAGAGC
1 AGATATATGTAGCTAGGTCACATGGGTGG-T--A-CTG-AGTGTACACCATGTAGACAAGAGAGC
*
97304464 TATA
61 TACA
* *
97304468 AGATAAACTG--GCTAGGTCACATGGGTGGTACTGAGTGTTCACCATGT-GTACAAGAGAGC
1 AGATATA-TGTAGCTAGGTCACATGGGTGGTACTGAGTGTACACCATGTAG-ACAAGAGAGC
97304527 CGAACTATAT
Statistics
Matches: 160, Mismatches: 18, Indels: 34
0.75 0.08 0.16
Matches are distributed among these distances:
61 2 0.01
62 4 0.03
63 19 0.12
64 21 0.13
65 7 0.04
66 18 0.11
67 32 0.20
68 54 0.34
69 2 0.01
70 1 0.01
ACGTcount: A:0.31, C:0.16, G:0.29, T:0.24
Consensus pattern (64 bp):
AGATATATGTAGCTAGGTCACATGGGTGGTACTGAGTGTACACCATGTAGACAAGAGAGCTACA
Found at i:97314433 original size:30 final size:31
Alignment explanation
Indices: 97314390--97314452 Score: 110
Period size: 30 Copynumber: 2.1 Consensus size: 31
97314380 AGGAAGATGA
*
97314390 TAACGCAAAAAAAAAAATTTTTTGTTTTATT
1 TAACGCAAAAAAAAAAAGTTTTTGTTTTATT
97314421 TAACGC-AAAAAAAAAAGTTTTTGTTTTATT
1 TAACGCAAAAAAAAAAAGTTTTTGTTTTATT
97314451 TA
1 TA
97314453 TTTTACTTTA
Statistics
Matches: 31, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
30 25 0.81
31 6 0.19
ACGTcount: A:0.44, C:0.06, G:0.08, T:0.41
Consensus pattern (31 bp):
TAACGCAAAAAAAAAAAGTTTTTGTTTTATT
Found at i:97324212 original size:19 final size:20
Alignment explanation
Indices: 97324185--97324228 Score: 54
Period size: 20 Copynumber: 2.2 Consensus size: 20
97324175 TCATGTTTAA
* *
97324185 TTAAGATAAAT-ATTCTTTT
1 TTAAAATAAATAATTATTTT
*
97324204 TTAAAATAATTAATTATTTT
1 TTAAAATAAATAATTATTTT
97324224 TTAAA
1 TTAAA
97324229 GAATTATCTG
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
19 9 0.43
20 12 0.57
ACGTcount: A:0.43, C:0.02, G:0.02, T:0.52
Consensus pattern (20 bp):
TTAAAATAAATAATTATTTT
Found at i:97325452 original size:38 final size:38
Alignment explanation
Indices: 97325382--97325466 Score: 134
Period size: 38 Copynumber: 2.2 Consensus size: 38
97325372 CTTTAAGTTT
* * * *
97325382 GAATATAATACCAGCACTAAGCCTGTGGGATTTAACCC
1 GAATATAATACCAACACGAAGCATGTGAGATTTAACCC
97325420 GAATATAATACCAACACGAAGCATGTGAGATTTAACCC
1 GAATATAATACCAACACGAAGCATGTGAGATTTAACCC
97325458 GAATATAAT
1 GAATATAAT
97325467 TCTAGCATAT
Statistics
Matches: 43, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
38 43 1.00
ACGTcount: A:0.40, C:0.20, G:0.16, T:0.24
Consensus pattern (38 bp):
GAATATAATACCAACACGAAGCATGTGAGATTTAACCC
Found at i:97333567 original size:38 final size:38
Alignment explanation
Indices: 97333397--97333556 Score: 196
Period size: 38 Copynumber: 4.2 Consensus size: 38
97333387 GAATCAAATC
* * ** *
97333397 ACCAGCACAAAACCTGCGGGACTTTAAGCTTGAATATAAT
1 ACCAGCACGAAGCCTGCGGGA-TTTAA-CCCGGATATAAT
*
97333437 ACCAGCACTAAGCCTGCGGGATTTAACCCGGATATAAT
1 ACCAGCACGAAGCCTGCGGGATTTAACCCGGATATAAT
* * * *
97333475 AGCAGCACGAAGCCTTCAGGATTTAACCCAGAT-TAAT
1 ACCAGCACGAAGCCTGCGGGATTTAACCCGGATATAAT
97333512 ACCAGCACGAAGCCTGCGGGATTTAACCCGGATATAAT
1 ACCAGCACGAAGCCTGCGGGATTTAACCCGGATATAAT
*
97333550 TCCAGCA
1 ACCAGCA
97333557 TATAGCCTGC
Statistics
Matches: 104, Mismatches: 15, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
37 33 0.32
38 47 0.45
39 5 0.05
40 19 0.18
ACGTcount: A:0.34, C:0.26, G:0.20, T:0.21
Consensus pattern (38 bp):
ACCAGCACGAAGCCTGCGGGATTTAACCCGGATATAAT
Found at i:97338576 original size:48 final size:48
Alignment explanation
Indices: 97338524--97338639 Score: 189
Period size: 47 Copynumber: 2.4 Consensus size: 48
97338514 TGAATATTGG
*
97338524 TTGATTTGGCTTCAGGCCATGATATCAATACTTCAGATATAAGTTACA
1 TTGATTTGGCTTCGGGCCATGATATCAATACTTCAGATATAAGTTACA
* *
97338572 TTGATTT-GCTTCGGGCCATGATATCAATACTTCGGATATAAGTTACC
1 TTGATTTGGCTTCGGGCCATGATATCAATACTTCAGATATAAGTTACA
*
97338619 TTGATTTGCCTTCGGGCCATG
1 TTGATTTGGCTTCGGGCCATG
97338640 GTATAGGTAC
Statistics
Matches: 63, Mismatches: 4, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
47 44 0.70
48 19 0.30
ACGTcount: A:0.25, C:0.19, G:0.20, T:0.36
Consensus pattern (48 bp):
TTGATTTGGCTTCGGGCCATGATATCAATACTTCAGATATAAGTTACA
Found at i:97352704 original size:40 final size:40
Alignment explanation
Indices: 97352649--97353405 Score: 1097
Period size: 40 Copynumber: 18.9 Consensus size: 40
97352639 TGAGAGTTAT
*
97352649 ATATATCCGGGCTAAGTCCCGAAGAGCAATCGTGCTAGTG
1 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTG
*
97352689 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTG
1 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTG
* *
97352729 ATATATTCGGGCTAAGTCCCGAAGAGCAATCGTGCTAGTG
1 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTG
*
97352769 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTG
1 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTG
* *
97352809 ATATATTCGGGCTAAGTCCCGAAGAGCAATCGTGCTAGTG
1 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTG
*
97352849 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTG
1 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTG
* *
97352889 ATATATTCGGGCTAAGTCCCGAAGAGCAATCGTGCTAGTG
1 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTG
*
97352929 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTG
1 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTG
* *
97352969 ATATATTCGGGCTAAGTCCCGAAGAGCAATCGTGCTAGTG
1 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTG
*
97353009 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTG
1 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTG
* *
97353049 ATATATTCGGGCTAAGTCCCGAAGAGCAATCGTGCTAGTG
1 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTG
* *
97353089 ATATATCCGGGCTAAGTCCCGAAGAGTAATCGTGCTAGTG
1 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTG
* *
97353129 ATATATTCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTG
1 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTG
* * *
97353169 TTATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTA
1 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTG
* * * * *
97353209 ATATGTCCGGGCTAAGTTCCGAAGAGCATTCATGCTGGTA
1 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTG
** * * *
97353249 ATATGA-CCGGGCTAAGTTTCGAAGAGCACTCATGCTGGTG
1 ATAT-ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTG
**
97353289 ATATATCCGGGCTAAGTTTCGAAGAGCATTCGTGCTAGTG
1 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTG
* * *
97353329 ATATAACCGGGCTAAGTCCCGAAGAGCAATCATGCTAGTG
1 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTG
* * * *
97353369 ATAAATCCGGGTTAA-ACCTCGAAG-GCATTCATGCTAG
1 ATATATCCGGGCTAAGTCC-CGAAGAGCATTCGTGCTAG
97353406 AATTATGAGG
Statistics
Matches: 655, Mismatches: 59, Indels: 7
0.91 0.08 0.01
Matches are distributed among these distances:
39 15 0.02
40 640 0.98
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (40 bp):
ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTG
Found at i:97356105 original size:47 final size:47
Alignment explanation
Indices: 97355963--97356203 Score: 304
Period size: 47 Copynumber: 5.1 Consensus size: 47
97355953 TTAGGATTTT
** * *
97355963 ATGTGATGAATGTGAATGTGTATATATGAGATAAGGCCGAATGG-CA
1 ATGTGATGAATGTGAACATGTATATGTGTGATAAGGCCGAATGGCCA
* *
97356009 ATGTGATGAATGTGAACCTGTATATATATGCGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAA-C---ATGTATATGTGTGATAAGGCCGAATGGCCA
**
97356060 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGTATATGTGTGATAAGGCCGAATGGCCA
* **
97356107 ATGTGATGAATGTTAACATGCGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGTATATGTGTGATAAGGCCGAATGGCCA
* ** *
97356154 ATGTGATGAATGTGAACATGTATATATGAAATAAGGCCGAATGGCTA
1 ATGTGATGAATGTGAACATGTATATGTGTGATAAGGCCGAATGGCCA
97356201 ATG
1 ATG
97356204 CGAAATGTGT
Statistics
Matches: 172, Mismatches: 18, Indels: 9
0.86 0.09 0.05
Matches are distributed among these distances:
46 16 0.09
47 115 0.67
50 23 0.13
51 18 0.10
ACGTcount: A:0.33, C:0.11, G:0.29, T:0.27
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGTATATGTGTGATAAGGCCGAATGGCCA
Found at i:97356250 original size:46 final size:46
Alignment explanation
Indices: 97356189--97356312 Score: 185
Period size: 46 Copynumber: 2.7 Consensus size: 46
97356179 ATGAAATAAG
97356189 GCCGAATGGCTAATGCGAAATGTGTATGAGATAGATATGAGGTAAA
1 GCCGAATGGCTAATGCGAAATGTGTATGAGATAGATATGAGGTAAA
* * *
97356235 GCCGAATGGCTAATGCGAAACGTGTATGAGATGGATATGTGGTAAA
1 GCCGAATGGCTAATGCGAAATGTGTATGAGATAGATATGAGGTAAA
* * * *
97356281 GCCAAATGGCTAATGTGAGATATGTATGAGAT
1 GCCGAATGGCTAATGCGAAATGTGTATGAGAT
97356313 GTGTATATAT
Statistics
Matches: 70, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
46 70 1.00
ACGTcount: A:0.35, C:0.10, G:0.31, T:0.25
Consensus pattern (46 bp):
GCCGAATGGCTAATGCGAAATGTGTATGAGATAGATATGAGGTAAA
Found at i:97357014 original size:37 final size:37
Alignment explanation
Indices: 97356485--97357013 Score: 968
Period size: 37 Copynumber: 14.3 Consensus size: 37
97356475 GATGACCATA
* * *
97356485 TGTGGTGACTATGTCTGGGTTAAGACCCGATGACTACG
1 TGTGGAGATTATGTCCGGG-TAAGACCCGATGACTACG
97356523 TGTGGAGATTATGTCCGGGTAAGACCCGATGACTACG
1 TGTGGAGATTATGTCCGGGTAAGACCCGATGACTACG
97356560 TGTGGAGATTATGTCCGGGTAAGACCCGATGACTACG
1 TGTGGAGATTATGTCCGGGTAAGACCCGATGACTACG
97356597 TGTGGAGATTATGTCCGGGTAAGACCCGATGACTACG
1 TGTGGAGATTATGTCCGGGTAAGACCCGATGACTACG
97356634 TGTGGAGATTATGTCCGGGTAAGACCCGATGACTACG
1 TGTGGAGATTATGTCCGGGTAAGACCCGATGACTACG
97356671 TGTGGAGATTATGTCCGGGTAAGACCCGATGACTACG
1 TGTGGAGATTATGTCCGGGTAAGACCCGATGACTACG
97356708 TGTGGAGATTATGTCCGGGTAAGACCCGATGACTACG
1 TGTGGAGATTATGTCCGGGTAAGACCCGATGACTACG
97356745 TGTGGAGATTATGTCCGGGTAAGACCCGATGACTACG
1 TGTGGAGATTATGTCCGGGTAAGACCCGATGACTACG
97356782 TGTGGAGATTATGTCCGGGTAAGACCCGATGACTACG
1 TGTGGAGATTATGTCCGGGTAAGACCCGATGACTACG
97356819 TGTGGAGATTATGTCCGGGTAAGACCCGATGACTACG
1 TGTGGAGATTATGTCCGGGTAAGACCCGATGACTACG
97356856 TGTGGAGATTATGTCCGGGTAAGACCCGATGACTACG
1 TGTGGAGATTATGTCCGGGTAAGACCCGATGACTACG
97356893 TGTGGAGATTATGTCCGGGTAAGACCCGATGACTACG
1 TGTGGAGATTATGTCCGGGTAAGACCCGATGACTACG
*
97356930 TGTGGAGATTTTGTCCGGGTAAGACCCGATGACTACG
1 TGTGGAGATTATGTCCGGGTAAGACCCGATGACTACG
* * * * *
97356967 TGTGGAGATTTTGTTCGGGTAAGACTCGATAACTTCG
1 TGTGGAGATTATGTCCGGGTAAGACCCGATGACTACG
97357004 TGTGGAGATT
1 TGTGGAGATT
97357014 TCATCTGAGC
Statistics
Matches: 483, Mismatches: 8, Indels: 1
0.98 0.02 0.00
Matches are distributed among these distances:
37 467 0.97
38 16 0.03
ACGTcount: A:0.24, C:0.18, G:0.32, T:0.26
Consensus pattern (37 bp):
TGTGGAGATTATGTCCGGGTAAGACCCGATGACTACG
Found at i:97358857 original size:29 final size:27
Alignment explanation
Indices: 97358839--97358908 Score: 113
Period size: 27 Copynumber: 2.6 Consensus size: 27
97358829 ATATTAAGTC
97358839 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTCAGTGCTATATAATCAACT
*
97358866 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTCAGTGCTATATAATC-AACT
*
97358894 CGCACACTTAGTGCT
1 CGCACACTCAGTGCT
97358909 GTACAATTTA
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 22 0.54
28 19 0.46
ACGTcount: A:0.31, C:0.29, G:0.13, T:0.27
Consensus pattern (27 bp):
CGCACACTCAGTGCTATATAATCAACT
Found at i:97358902 original size:28 final size:28
Alignment explanation
Indices: 97358839--97358936 Score: 135
Period size: 28 Copynumber: 3.5 Consensus size: 28
97358829 ATATTAAGTC
*
97358839 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
97358866 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
97358894 CGCACACTTAGTGCTGTACAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
97358923 CGCACACTTAGTGC
1 CGCACACTTAGTGC
97358937 CAATCTCATG
Statistics
Matches: 64, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
27 22 0.34
28 23 0.36
29 19 0.30
ACGTcount: A:0.32, C:0.29, G:0.13, T:0.27
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:97361752 original size:58 final size:59
Alignment explanation
Indices: 97361662--97361782 Score: 181
Period size: 58 Copynumber: 2.1 Consensus size: 59
97361652 GAGAGAGACA
* * *
97361662 GGGACGATTCATTCATTGTTGGGTACTGAACATGCAACGGTATATGAATTCTAGC-TTT
1 GGGACGATTCATTCATTATTGGGTACCGAACATGCAACGGTATATGAATTCTACCTTTT
* * *
97361720 GGGACGGTTCATTCATTATTGGGTACCGAACATGTAACGGTATTTGAATTCTACCTTTT
1 GGGACGATTCATTCATTATTGGGTACCGAACATGCAACGGTATATGAATTCTACCTTTT
97361779 GGGA
1 GGGA
97361783 TTGGGGAGGG
Statistics
Matches: 56, Mismatches: 6, Indels: 1
0.89 0.10 0.02
Matches are distributed among these distances:
58 49 0.88
59 7 0.12
ACGTcount: A:0.25, C:0.16, G:0.25, T:0.35
Consensus pattern (59 bp):
GGGACGATTCATTCATTATTGGGTACCGAACATGCAACGGTATATGAATTCTACCTTTT
Found at i:97361866 original size:24 final size:24
Alignment explanation
Indices: 97361820--97361866 Score: 67
Period size: 24 Copynumber: 2.0 Consensus size: 24
97361810 GTATATGCCA
* *
97361820 GGATGGATCGCCGGATCATCGCTT
1 GGATGGATCGCCGGAGCACCGCTT
*
97361844 GGATGGATCGTCGGAGCACCGCT
1 GGATGGATCGCCGGAGCACCGCT
97361867 GGGAACCTAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.17, C:0.26, G:0.36, T:0.21
Consensus pattern (24 bp):
GGATGGATCGCCGGAGCACCGCTT
Found at i:97362363 original size:58 final size:59
Alignment explanation
Indices: 97362273--97362393 Score: 181
Period size: 58 Copynumber: 2.1 Consensus size: 59
97362263 GAGAGAGACA
* * *
97362273 GGGACGATTCATTCATTGTTGGGTACTGAACATGCAACGGTATATGAATTCTAGC-TTT
1 GGGACGATTCATTCATTATTGGGTACCGAACATGCAACGGTATATGAATTCTACCTTTT
* * *
97362331 GGGACGGTTCATTCATTATTGGGTACCGAACATGTAACGGTATTTGAATTCTACCTTTT
1 GGGACGATTCATTCATTATTGGGTACCGAACATGCAACGGTATATGAATTCTACCTTTT
97362390 GGGA
1 GGGA
97362394 TTGGGGAGGG
Statistics
Matches: 56, Mismatches: 6, Indels: 1
0.89 0.10 0.02
Matches are distributed among these distances:
58 49 0.88
59 7 0.12
ACGTcount: A:0.25, C:0.16, G:0.25, T:0.35
Consensus pattern (59 bp):
GGGACGATTCATTCATTATTGGGTACCGAACATGCAACGGTATATGAATTCTACCTTTT
Found at i:97362477 original size:24 final size:24
Alignment explanation
Indices: 97362431--97362477 Score: 67
Period size: 24 Copynumber: 2.0 Consensus size: 24
97362421 GTATATGCCA
* *
97362431 GGATGGATCGCCGGATCATCGCTT
1 GGATGGATCGCCGGAGCACCGCTT
*
97362455 GGATGGATCGTCGGAGCACCGCT
1 GGATGGATCGCCGGAGCACCGCT
97362478 GGGAACCTAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.17, C:0.26, G:0.36, T:0.21
Consensus pattern (24 bp):
GGATGGATCGCCGGAGCACCGCTT
Found at i:97362546 original size:611 final size:612
Alignment explanation
Indices: 97361383--97362654 Score: 2460
Period size: 611 Copynumber: 2.1 Consensus size: 612
97361373 GGGTTTTATC
* * * **
97361383 GCTACCAGGCGACATTCATGTGTCTGAAACAGGGACA-CTTT-ATGGTCCCGACGCTTCTGCACC
1 GCTACCAGTCGACATTCATGTGTCTGAAACAGGGACAGGTTTCA-GATGTCGACGCTTCTGCACC
97361446 AAGGGGGGCCCAAAATTAGCTTTGGTGCTCGACCCTCCAGCACATCCGATGCACCAAGGTACCGA
65 AAGGGGGGCCCAAAATTAGCTTTGGTGCTCGACCCTCCAGCACATCCGATGCACCAAGGTACCGA
97361511 TACTGCCCCATGCTCTGAAACATCAAAGGGGCTGGTGGCGCCCCGATGGCCCTGCACCACGGGAT
130 TACTGCCCCATGCTCTGAAACATCAAAGGGGCTGGTGGCGCCCCGATGGCCCTGCACCACGGGAT
97361576 GGAACACTCTGGCGATGGTGTACGAGAATACCGTACGACCGGGGGCCAAAGGTGCCGGAGGCTCT
195 GGAACACTCTGGCGATGGTGTACGAGAATACCGTACGACCGGGGGCCAAAGGTGCCGGAGGCTCT
97361641 TCTTGCAAAAGGAGAGAGACAGGGACGATTCATTCATTGTTGGGTACTGAACATGCAACGGTATA
260 TCTTGCAAAAGGAGAGAGACAGGGACGATTCATTCATTGTTGGGTACTGAACATGCAACGGTATA
97361706 TGAATTCTAGCTTTGGGACGGTTCATTCATTATTGGGTACCGAACATGTAACGGTATTTGAATTC
325 TGAATTCTAGCTTTGGGACGGTTCATTCATTATTGGGTACCGAACATGTAACGGTATTTGAATTC
97361771 TACCTTTTGGGATTGGGGAGGGACTCGTTGCGCCGTTTTGTATATGCCAGGATGGATCGCCGGAT
390 TACCTTTTGGGATTGGGGAGGGACTCGTTGCGCCGTTTTGTATATGCCAGGATGGATCGCCGGAT
97361836 CATCGCTTGGATGGATCGTCGGAGCACCGCTGGGAACCTAACCGGTGGTGGGGGGCACCGACGTC
455 CATCGCTTGGATGGATCGTCGGAGCACCGCTGGGAACCTAACCGGTGGTGGGGGGCACCGACGTC
97361901 CGGGCATGCGATGGGCGTGGGCAGTGCCCTGGATAACCCCTGGCTGCTCAATATCACTTCCCCCC
520 CGGGCATGCGATGGGCGTGGGCAGTGCCCTGGATAACCCCTGGCTGCTCAATATCACTTCCCCCC
97361966 TAAAGAACTAAAAAAACTTGGTCAATGT
585 TAAAGAACTAAAAAAACTTGGTCAATGT
97361994 GCTACCAGTCGACATTCATGTGTCTGAAACAGGGACAGGTTTCAGATGTC-ACGCTTCTGCACCA
1 GCTACCAGTCGACATTCATGTGTCTGAAACAGGGACAGGTTTCAGATGTCGACGCTTCTGCACCA
97362058 AGGGGGGCCCAAAATTAGCTTTGGTGCTCGACCCTCCAGCACATCCGATGCACCAAGGTACCGAT
66 AGGGGGGCCCAAAATTAGCTTTGGTGCTCGACCCTCCAGCACATCCGATGCACCAAGGTACCGAT
97362123 ACTGCCCCATGCTCTGAAACATCAAAGGGGCTGGTGGCGCCCCGATGGCCCTGCACCACGGGATG
131 ACTGCCCCATGCTCTGAAACATCAAAGGGGCTGGTGGCGCCCCGATGGCCCTGCACCACGGGATG
97362188 GAACACTCTGGCGATGGTGTACGAGAATACCGTACGACCGGGGGCCAAAGGTGCCGGAGGCTCTT
196 GAACACTCTGGCGATGGTGTACGAGAATACCGTACGACCGGGGGCCAAAGGTGCCGGAGGCTCTT
97362253 CTTGCAAAAGGAGAGAGACAGGGACGATTCATTCATTGTTGGGTACTGAACATGCAACGGTATAT
261 CTTGCAAAAGGAGAGAGACAGGGACGATTCATTCATTGTTGGGTACTGAACATGCAACGGTATAT
97362318 GAATTCTAGCTTTGGGACGGTTCATTCATTATTGGGTACCGAACATGTAACGGTATTTGAATTCT
326 GAATTCTAGCTTTGGGACGGTTCATTCATTATTGGGTACCGAACATGTAACGGTATTTGAATTCT
97362383 ACCTTTTGGGATTGGGGAGGGACTCGTTGCGCCGTTTTGTATATGCCAGGATGGATCGCCGGATC
391 ACCTTTTGGGATTGGGGAGGGACTCGTTGCGCCGTTTTGTATATGCCAGGATGGATCGCCGGATC
97362448 ATCGCTTGGATGGATCGTCGGAGCACCGCTGGGAACCTAACCGGTGGTGGGGGGCACCGACGTCC
456 ATCGCTTGGATGGATCGTCGGAGCACCGCTGGGAACCTAACCGGTGGTGGGGGGCACCGACGTCC
97362513 GGGCATGCGATGGGCGTGGGCAGTGCCCTGGATAACCCCTGGCTGCTCAATATCACTTCCCCCCT
521 GGGCATGCGATGGGCGTGGGCAGTGCCCTGGATAACCCCTGGCTGCTCAATATCACTTCCCCCCT
*
97362578 AAAGAGCTAAAAAAACTTGGTCAATGT
586 AAAGAACTAAAAAAACTTGGTCAATGT
97362605 GCTACCAGTCGACATTCATGTGTCTGAAACAGGGACAGGTTTCAGATGTC
1 GCTACCAGTCGACATTCATGTGTCTGAAACAGGGACAGGTTTCAGATGTC
97362655 TGAAACAGGG
Statistics
Matches: 653, Mismatches: 6, Indels: 4
0.98 0.01 0.01
Matches are distributed among these distances:
611 646 0.99
612 6 0.01
613 1 0.00
ACGTcount: A:0.23, C:0.25, G:0.29, T:0.23
Consensus pattern (612 bp):
GCTACCAGTCGACATTCATGTGTCTGAAACAGGGACAGGTTTCAGATGTCGACGCTTCTGCACCA
AGGGGGGCCCAAAATTAGCTTTGGTGCTCGACCCTCCAGCACATCCGATGCACCAAGGTACCGAT
ACTGCCCCATGCTCTGAAACATCAAAGGGGCTGGTGGCGCCCCGATGGCCCTGCACCACGGGATG
GAACACTCTGGCGATGGTGTACGAGAATACCGTACGACCGGGGGCCAAAGGTGCCGGAGGCTCTT
CTTGCAAAAGGAGAGAGACAGGGACGATTCATTCATTGTTGGGTACTGAACATGCAACGGTATAT
GAATTCTAGCTTTGGGACGGTTCATTCATTATTGGGTACCGAACATGTAACGGTATTTGAATTCT
ACCTTTTGGGATTGGGGAGGGACTCGTTGCGCCGTTTTGTATATGCCAGGATGGATCGCCGGATC
ATCGCTTGGATGGATCGTCGGAGCACCGCTGGGAACCTAACCGGTGGTGGGGGGCACCGACGTCC
GGGCATGCGATGGGCGTGGGCAGTGCCCTGGATAACCCCTGGCTGCTCAATATCACTTCCCCCCT
AAAGAACTAAAAAAACTTGGTCAATGT
Found at i:97363095 original size:82 final size:82
Alignment explanation
Indices: 97362983--97363150 Score: 282
Period size: 82 Copynumber: 2.0 Consensus size: 82
97362973 GTTTAACTTG
* * *
97362983 GAAATTTTTTCTGTTGGCCCAAAACAAAAGAACAAATACGAGAAGTCGAATGAAGTACGGCATGG
1 GAAATTTTTTCTGTTGGCCCAAAACAAAAGAAAAAATACAAGAAGCCGAATGAAGTACGGCATGG
97363048 CATGGCACGGCACGGCA
66 CATGGCACGGCACGGCA
* *
97363065 GAAATTTTTTCTGTTGGCCTAAAACAAAAGAAAAAATACAAGAAGCCGAATGAAGTATGGCATGG
1 GAAATTTTTTCTGTTGGCCCAAAACAAAAGAAAAAATACAAGAAGCCGAATGAAGTACGGCATGG
*
97363130 CATGGCATGGCACGGCA
66 CATGGCACGGCACGGCA
97363147 GAAA
1 GAAA
97363151 ATTGAACAAG
Statistics
Matches: 80, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
82 80 1.00
ACGTcount: A:0.39, C:0.17, G:0.25, T:0.19
Consensus pattern (82 bp):
GAAATTTTTTCTGTTGGCCCAAAACAAAAGAAAAAATACAAGAAGCCGAATGAAGTACGGCATGG
CATGGCACGGCACGGCA
Found at i:97370312 original size:43 final size:42
Alignment explanation
Indices: 97370262--97370386 Score: 121
Period size: 43 Copynumber: 3.0 Consensus size: 42
97370252 CACATTCGAG
** *
97370262 GCACTAGGGTGCCCCTGCTGCTCGAGGCACTCGCACATCCAA
1 GCACTAGGGTGCCAATGCTGCTCGAGGCTCTCGCACATCCAA
* * *
97370304 CGTC-CTAGGTTGCCTATGGTG-TCCGAGGCTC-CTGCACATCCAA
1 -G-CACTAGGGTGCCAATGCTGCT-CGAGGCTCTC-GCACATCCAA
* *
97370347 GCACCAAGGTGCCAATGCTGCTCGAGGCTCTCGCACATCC
1 GCACTAGGGTGCCAATGCTGCTCGAGGCTCTCGCACATCC
97370387 GAGGCACCAA
Statistics
Matches: 66, Mismatches: 10, Indels: 13
0.74 0.11 0.15
Matches are distributed among these distances:
41 1 0.02
42 31 0.47
43 33 0.50
44 1 0.02
ACGTcount: A:0.18, C:0.36, G:0.26, T:0.20
Consensus pattern (42 bp):
GCACTAGGGTGCCAATGCTGCTCGAGGCTCTCGCACATCCAA
Found at i:97370417 original size:43 final size:41
Alignment explanation
Indices: 97370314--97372808 Score: 653
Period size: 43 Copynumber: 58.6 Consensus size: 41
97370304 CGTCCTAGGT
* *
97370314 TGCCTATGGTG-TCCGAGGCTCCTGCACATCCAAGCACCAAGG
1 TGCCGATGGTGCT-CGAGGCTCC-GCACATCCAGGCACCAAGG
* *
97370356 TGCCAATGCTGCTCGAGGCTCTCGCACATCCGAGGCACCAAGG
1 TGCCGATGGTGCTCGAGGCTC-CGCACATCC-AGGCACCAAGG
* * * *
97370399 TGCCGATGGTTCTTGAGGCTCCCGCACCA-CCAAGG-GCCTAGG
1 TGCCGATGGTGCTCGAGGCT-CCGCA-CATCC-AGGCACCAAGG
* * * *
97370441 TTACCGATGGTGCCCGAGGCTCCGGCACGA-CCAAGG-GCCTAGG
1 -TGCCGATGGTGCTCGAGGCTCC-GCAC-ATCC-AGGCACCAAGG
* *
97370484 TTGCCGATGGTG-TCTGAGGCTCCCGCACATCCAAGCACCAAGA
1 -TGCCGATGGTGCTC-GAGGCT-CCGCACATCCAGGCACCAAGG
* * ** *
97370527 TGCCGATGGTGCCCGAGGCTCCCGCACGA-CTAGGGGCCTAGG
1 TGCCGATGGTGCTCGAGGCT-CCGCAC-ATCCAGGCACCAAGG
* * *
97370569 TTACCGATGGTG-TCCGAGGCTCCCGCACATCCAAGCTCCAAGG
1 -TGCCGATGGTGCT-CGAGGCT-CCGCACATCCAGGCACCAAGG
* * * *
97370612 TGCCGATGGTGCCCAAGGCTCCCGCACGA-CCAAGG-GCCTAGG
1 TGCCGATGGTGCTCGAGGCT-CCGCAC-ATCC-AGGCACCAAGG
* * * * *
97370654 TGCGGATGGT-CCCGATGCTCTCGCACGA-CCAAGGGC-CTAGGG
1 TGCCGATGGTGCTCGAGGCTC-CGCAC-ATCC-A-GGCACCAAGG
* * *
97370696 TGCCGATGGTGCCCGAGGCTCTCGCACGA-CCAGGGGCA-TAGGG
1 TGCCGATGGTGCTCGAGGCTC-CGCAC-ATCCA--GGCACCAAGG
* ** *
97370739 TGCCGATGGTGCCCGAGGCTCCTGCACGA-CCAGGGGCCTAGG
1 TGCCGATGGTGCTCGAGGCTCC-GCAC-ATCCAGGCACCAAGG
* ** *
97370781 TTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAGGGGCCTAGG
1 -TGCCGATGGTGCTCGAGGCT-CCGCAC-ATCCAGGCACCAAGG
* * *
97370824 TTGTCGATGGTG-TCCGAGGCTCCCGCACATCCAAGCTCCAAGG
1 -TGCCGATGGTGCT-CGAGGCT-CCGCACATCCAGGCACCAAGG
* * * *
97370867 TGCCGATGGTGCCCAAGGCTCCCGCACGA-CCAAGG-GCCTAGG
1 TGCCGATGGTGCTCGAGGCT-CCGCAC-ATCC-AGGCACCAAGG
* * * * *
97370909 TGCGGATGGT-CCCGATGCTCTCGCACGA-CCAAGGGC-CTAGGG
1 TGCCGATGGTGCTCGAGGCTC-CGCAC-ATCC-A-GGCACCAAGG
* * *
97370951 TGCCGATGGTGCCCGAGGCTCTCGCACGA-CCAGGGGCA-TAGGG
1 TGCCGATGGTGCTCGAGGCTC-CGCAC-ATCCA--GGCACCAAGG
* ** *
97370994 TGCCGATGGTGCCCGAGGCTCCTGCACGA-CCAGGGGCCTAGG
1 TGCCGATGGTGCTCGAGGCTCC-GCAC-ATCCAGGCACCAAGG
* * * **
97371036 TTGCCGATGGTGCCCGAGGCCCCACACGA-CCAGGGGCCAAGG
1 -TGCCGATGGTGCTCGAGGCTCCGCAC-ATCCAGGCACCAAGG
* * ** *
97371078 TTGCCGATGGTGCCCGAGGCTCCCGCACGA-CTAGGGGCCTAGG
1 -TGCCGATGGTGCTCGAGGCT-CCGCAC-ATCCAGGCACCAAGG
* * *
97371121 TTACCGATGGTG-TCCGAGGCTCCCGCACATCCAAGCTCCAAGG
1 -TGCCGATGGTGCT-CGAGGCT-CCGCACATCCAGGCACCAAGG
* * * *
97371164 TGCCGATGGTGCCCAAGGCTCCCGCACGA-CCAAGG-GCCTAGG
1 TGCCGATGGTGCTCGAGGCT-CCGCAC-ATCC-AGGCACCAAGG
* * * * *
97371206 TGCGGATGGT-CCCGATGCTCTCGCACGA-CCAAGGGC-CTAGGG
1 TGCCGATGGTGCTCGAGGCTC-CGCAC-ATCC-A-GGCACCAAGG
* * *
97371248 TGCCGATGGTGCCCGAGGCTCTCGCACGA-CCAGGGGCA-TAGGG
1 TGCCGATGGTGCTCGAGGCTC-CGCAC-ATCCA--GGCACCAAGG
* ** *
97371291 TGCCGATGGTGCCCGAGGCTCCTGCACGA-CCAGGGGCCTAGG
1 TGCCGATGGTGCTCGAGGCTCC-GCAC-ATCCAGGCACCAAGG
* * * **
97371333 TTGCCGATGGTGCCCGAGGCCCCACACGA-CCAGGGGCCAAGG
1 -TGCCGATGGTGCTCGAGGCTCCGCAC-ATCCAGGCACCAAGG
* ** *
97371375 TTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAGGGGCCTAGG
1 -TGCCGATGGTGCTCGAGGCT-CCGCAC-ATCCAGGCACCAAGG
* ** *
97371418 ATGCCGATGGTG-TCTGAGGCTCCCGCA-AGACCAGGGGCCTAGG
1 -TGCCGATGGTGCTC-GAGGCT-CCGCACA-TCCAGGCACCAAGG
* ** *
97371461 TGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAGGGGCCTAGG
1 TGCCGATGGTGCTCGAGGCT-CCGCAC-ATCCAGGCACCAAGG
* * * **
97371503 TTGTCGATGGTGCCCGAGGCTCCCGCACGA-CCGGGGGCCAAGG
1 -TGCCGATGGTGCTCGAGGCT-CCGCAC-ATCCAGGCACCAAGG
* * * *
97371546 TTGCCGATGGT-CCCGAGGCTCCCGCACGA-CTAGAG-GCCTAGG
1 -TGCCGATGGTGCTCGAGGCT-CCGCAC-ATCCAG-GCACCAAGG
* * * **
97371588 TTGCCGATGGTGCCCGAGGCCCCACACGA-CCAGGGGCCAAGG
1 -TGCCGATGGTGCTCGAGGCTCCGCAC-ATCCAGGCACCAAGG
* ** *
97371630 TTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAGGGGCCTAGG
1 -TGCCGATGGTGCTCGAGGCT-CCGCAC-ATCCAGGCACCAAGG
* * * *
97371673 TTGCCAATGGT-CCCGAGGCTCC-CGCATGACCAGG-AGCCTAGG
1 -TGCCGATGGTGCTCGAGGCTCCGCACAT--CCAGGCA-CCAAGG
* ** *
97371715 TTGCCGATGGTG-TCCGAGGCTCCCGTACGA-CCAGGGGCCTAGGG
1 -TGCCGATGGTGCT-CGAGGCT-CCGCAC-ATCCAGGCACC-AAGG
** *
97371759 TGCCGATGGTG-TCCGAGGCTCCCGCACGA-CCAGGGGCCTAGGG
1 TGCCGATGGTGCT-CGAGGCT-CCGCAC-ATCCAGGCACC-AAGG
** *
97371802 TGCCGATGGTG-TCCGAGGCTCCCGCACGA-CCAGGGGCCTAGG
1 TGCCGATGGTGCT-CGAGGCT-CCGCAC-ATCCAGGCACCAAGG
* ** *
97371844 ATGCCGATGGTG-TCTGAGGCTCCCGCA-AGACCAGGGGCCTAGG
1 -TGCCGATGGTGCTC-GAGGCT-CCGCACA-TCCAGGCACCAAGG
* * *
97371887 TGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGG-GCCTAGG
1 TGCCGATGGTGCTCGAGGCT-CCGCAC-ATCC-AGGCACCAAGG
* ** *
97371929 ATGCCGATGGTG-TCTGAGGCTCCCGCA-AGACCAGGGGCCTAGG
1 -TGCCGATGGTGCTC-GAGGCT-CCGCACA-TCCAGGCACCAAGG
* ** *
97371972 TGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAGGGGCCTAGG
1 TGCCGATGGTGCTCGAGGCT-CCGCAC-ATCCAGGCACCAAGG
* ** *
97372014 ATGCCGATGGTG-TCTGAGGCTCCCGCA-AGACCAGGGGCCTAGG
1 -TGCCGATGGTGCTC-GAGGCT-CCGCACA-TCCAGGCACCAAGG
* ** *
97372057 TGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAGGGGCCTAGG
1 TGCCGATGGTGCTCGAGGCT-CCGCAC-ATCCAGGCACCAAGG
* ** *
97372099 ATGCCGATGGTG-TCTGAGGCTCCCGCA-AGACCAGGGGCCTAGG
1 -TGCCGATGGTGCTC-GAGGCT-CCGCACA-TCCAGGCACCAAGG
* ** *
97372142 TGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAGGGGCCTAGG
1 TGCCGATGGTGCTCGAGGCT-CCGCAC-ATCCAGGCACCAAGG
* ** *
97372184 ATGCCGATGGTG-TCTGAGGCTCCCGCA-AGACCAGGGGCCTAGG
1 -TGCCGATGGTGCTC-GAGGCT-CCGCACA-TCCAGGCACCAAGG
* ** *
97372227 TGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAGGGGCCTAGG
1 TGCCGATGGTGCTCGAGGCT-CCGCAC-ATCCAGGCACCAAGG
* ** *
97372269 ATGCCGATGGTG-TCTGAGGCTCCCGCA-AGACCAGGGGCCTAGG
1 -TGCCGATGGTGCTC-GAGGCT-CCGCACA-TCCAGGCACCAAGG
* ** *
97372312 TGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAGGGGCCTAGG
1 TGCCGATGGTGCTCGAGGCT-CCGCAC-ATCCAGGCACCAAGG
* ** *
97372354 ATGCCGATGGTG-TCTGAGGCTCCCGCA-AGACCAGGGGCCTAGG
1 -TGCCGATGGTGCTC-GAGGCT-CCGCACA-TCCAGGCACCAAGG
* ** *
97372397 TGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAGGGGCCTAGG
1 TGCCGATGGTGCTCGAGGCT-CCGCAC-ATCCAGGCACCAAGG
* * *
97372439 TTACCGATGGTG-TCCGAGGCTCCCGCACATCCAAGCTCCAAGG
1 -TGCCGATGGTGCT-CGAGGCT-CCGCACATCCAGGCACCAAGG
* * * *
97372482 TGCCGATGGTGCCCAAGGCTCCCGCACGA-CCAAGG-GCCTAGG
1 TGCCGATGGTGCTCGAGGCT-CCGCAC-ATCC-AGGCACCAAGG
* * *
97372524 TTGCCGATGGTG-TCCGAGGCTCC-CACACGACCAAGGGCA-TAAGT
1 -TGCCGATGGTGCT-CGAGGCTCCGCACA--TCC-A-GGCACCAAGG
* *
97372568 TGCCGATGGTGC-CGAGGCTCGCGCACGA-CCAAGG-GCCTAGG
1 TGCCGATGGTGCTCGAGGCTC-CGCAC-ATCC-AGGCACCAAGG
* * * * * *
97372609 TTACCGATGGTGCCCGAGGTTCCCGAACGA-CCAAGG-GCCTAGG
1 -TGCCGATGGTGCTCGAGGCT-CCGCAC-ATCC-AGGCACCAAGG
* * *
97372652 TTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGG-GCCTAGG
1 -TGCCGATGGTGCTCGAGGCT-CCGCAC-ATCC-AGGCACCAAGG
* * * *
97372695 TTACCGATGGTGGC-CGAGGCTCCCGCACAACCAAGG-GCCTAGG
1 -TGCCGATGGT-GCTCGAGGCT-CCGCACATCC-AGGCACCAAGG
* *
97372738 TTGCTGATGGTG-TCCGAGGCTCCTGCATATCCAAGGCACCAAGG
1 -TGCCGATGGTGCT-CGAGGCTCC-GCACATCC-AGGCACCAAGG
*
97372782 TGCCGATGCTGCTCGAGGCTCTCGCAC
1 TGCCGATGGTGCTCGAGGCTC-CGCAC
97372809 CACTGACGTC
Statistics
Matches: 2093, Mismatches: 198, Indels: 323
0.80 0.08 0.12
Matches are distributed among these distances:
39 1 0.00
40 6 0.00
41 78 0.04
42 776 0.37
43 1193 0.57
44 36 0.02
45 2 0.00
46 1 0.00
ACGTcount: A:0.17, C:0.33, G:0.35, T:0.15
Consensus pattern (41 bp):
TGCCGATGGTGCTCGAGGCTCCGCACATCCAGGCACCAAGG
Found at i:97370417 original size:85 final size:85
Alignment explanation
Indices: 97370307--97372760 Score: 2312
Period size: 85 Copynumber: 28.8 Consensus size: 85
97370297 CATCCAACGT
* * * * *
97370307 CCTAGGTTGCCTATGGTGTCCGAGGCTCCTGCACATCCAAGCACCAAGGTGCCAATGCTGCTCGA
1 CCTAGGTTGCCGATGGTGTCCGAGGCTCCCGCACATCCAAGCACCAAGGTGCCGATGGTGCCCGA
* * *
97370372 GGCTCTCGCAC-ATCCGAGGCA
66 GGCTCCCGCACGA-CCAAGG-G
* * ** * *
97370393 CCAAGG-TGCCGATGGT-TCTTGAGGCTCCCGCACCA-CCAAGGGCCTAGGTTACCGATGGTGCC
1 CCTAGGTTGCCGATGGTGTC-CGAGGCTCCCGCA-CATCCAAGCACCAAGG-TGCCGATGGTGCC
*
97370455 CGAGGCTCCGGCACGACCAAGGG
63 CGAGGCTCCCGCACGACCAAGGG
* *
97370478 CCTAGGTTGCCGATGGTGTCTGAGGCTCCCGCACATCCAAGCACCAAGATGCCGATGGTGCCCGA
1 CCTAGGTTGCCGATGGTGTCCGAGGCTCCCGCACATCCAAGCACCAAGGTGCCGATGGTGCCCGA
* *
97370543 GGCTCCCGCACGACTAGGGG
66 GGCTCCCGCACGACCAAGGG
* * *
97370563 CCTAGGTTACCGATGGTGTCCGAGGCTCCCGCACATCCAAGCTCCAAGGTGCCGATGGTGCCCAA
1 CCTAGGTTGCCGATGGTGTCCGAGGCTCCCGCACATCCAAGCACCAAGGTGCCGATGGTGCCCGA
97370628 GGCTCCCGCACGACCAAGGG
66 GGCTCCCGCACGACCAAGGG
* * * * ** *
97370648 CCTAGG-TGCGGATGGT-CCCGATGCTCTCGCACGA-CCAAGGGCCTAGGGTGCCGATGGTGCCC
1 CCTAGGTTGCCGATGGTGTCCGAGGCTCCCGCAC-ATCCAAGCACC-AAGGTGCCGATGGTGCCC
* *
97370710 GAGGCTCTCGCACGACCAGGGG
64 GAGGCTCCCGCACGACCAAGGG
* * * * * ** *
97370732 CATAGGGTGCCGATGGTGCCCGAGGCTCCTGCACGA-CCAGGGGCCTAGGTTGCCGATGGTGCCC
1 CCTAGGTTGCCGATGGTGTCCGAGGCTCCCGCAC-ATCCAAGCACCAAGG-TGCCGATGGTGCCC
*
97370796 GAGGCTCCCGCACGACCAGGGG
64 GAGGCTCCCGCACGACCAAGGG
* * *
97370818 CCTAGGTTGTCGATGGTGTCCGAGGCTCCCGCACATCCAAGCTCCAAGGTGCCGATGGTGCCCAA
1 CCTAGGTTGCCGATGGTGTCCGAGGCTCCCGCACATCCAAGCACCAAGGTGCCGATGGTGCCCGA
97370883 GGCTCCCGCACGACCAAGGG
66 GGCTCCCGCACGACCAAGGG
* * * * ** *
97370903 CCTAGG-TGCGGATGGT-CCCGATGCTCTCGCACGA-CCAAGGGCCTAGGGTGCCGATGGTGCCC
1 CCTAGGTTGCCGATGGTGTCCGAGGCTCCCGCAC-ATCCAAGCACC-AAGGTGCCGATGGTGCCC
* *
97370965 GAGGCTCTCGCACGACCAGGGG
64 GAGGCTCCCGCACGACCAAGGG
* * * * * ** *
97370987 CATAGGGTGCCGATGGTGCCCGAGGCTCCTGCACGA-CCAGGGGCCTAGGTTGCCGATGGTGCCC
1 CCTAGGTTGCCGATGGTGTCCGAGGCTCCCGCAC-ATCCAAGCACCAAGG-TGCCGATGGTGCCC
* *
97371051 GAGGC-CCCACACGACCAGGGG
64 GAGGCTCCCGCACGACCAAGGG
* * * * ** * * *
97371072 CCAAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGA-CTAGGGGCCTAGGTTACCGATGGTGTCC
1 CCTAGGTTGCCGATGGTGTCCGAGGCTCCCGCAC-ATCCAAGCACCAAGG-TGCCGATGGTGCCC
**
97371136 GAGGCTCCCGCAC-ATCCAAGCT
64 GAGGCTCCCGCACGA-CCAAGGG
* * * ** * *
97371158 CCAAGG-TGCCGATGGTGCCCAAGGCTCCCGCACGA-CCAAGGGCCTAGGTGCGGATGGT-CCCG
1 CCTAGGTTGCCGATGGTGTCCGAGGCTCCCGCAC-ATCCAAGCACCAAGGTGCCGATGGTGCCCG
* *
97371220 ATGCTCTCGCACGACCAAGGG
65 AGGCTCCCGCACGACCAAGGG
* * * * * *
97371241 CCTAGGGTGCCGATGGTGCCCGAGGCTCTCGCACGA-CCAGGGGCA-TAGGGTGCCGATGGTGCC
1 CCTAGGTTGCCGATGGTGTCCGAGGCTCCCGCAC-ATCCA--AGCACCAAGGTGCCGATGGTGCC
* *
97371304 CGAGGCTCCTGCACGACCAGGGG
63 CGAGGCTCCCGCACGACCAAGGG
* * * **
97371327 CCTAGGTTGCCGATGGTGCCCGAGGC-CCCACACGA-CCAGGGGCCAAGGTTGCCGATGGTGCCC
1 CCTAGGTTGCCGATGGTGTCCGAGGCTCCCGCAC-ATCCAAGCACCAAGG-TGCCGATGGTGCCC
*
97371390 GAGGCTCCCGCACGACCAGGGG
64 GAGGCTCCCGCACGACCAAGGG
* * * * ** *
97371412 CCTAGGATGCCGATGGTGTCTGAGGCTCCCGCA-AGACCAGGGGCCTAGGTGCCGATGGTGCCCG
1 CCTAGGTTGCCGATGGTGTCCGAGGCTCCCGCACA-TCCAAGCACCAAGGTGCCGATGGTGCCCG
*
97371476 AGGCTCCCGCACGACCAGGGG
65 AGGCTCCCGCACGACCAAGGG
* * ** **
97371497 CCTAGGTTGTCGATGGTGCCCGAGGCTCCCGCACGA-CCGGGGGCCAAGGTTGCCGATGGT-CCC
1 CCTAGGTTGCCGATGGTGTCCGAGGCTCCCGCAC-ATCCAAGCACCAAGG-TGCCGATGGTGCCC
*
97371560 GAGGCTCCCGCACGA-CTAGAGG
64 GAGGCTCCCGCACGACCAAG-GG
* * * **
97371582 CCTAGGTTGCCGATGGTGCCCGAGGC-CCCACACGA-CCAGGGGCCAAGGTTGCCGATGGTGCCC
1 CCTAGGTTGCCGATGGTGTCCGAGGCTCCCGCAC-ATCCAAGCACCAAGG-TGCCGATGGTGCCC
*
97371645 GAGGCTCCCGCACGACCAGGGG
64 GAGGCTCCCGCACGACCAAGGG
* * * * * *
97371667 CCTAGGTTGCCAATGGT-CCCGAGGCTCCCGCATGA-CC-AGGAGCCTAGGTTGCCGATGGTGTC
1 CCTAGGTTGCCGATGGTGTCCGAGGCTCCCGCA-CATCCAAGCA-CCAAGG-TGCCGATGGTGCC
* *
97371729 CGAGGCTCCCGTACGACCAGGGG
63 CGAGGCTCCCGCACGACCAAGGG
* * ** * *
97371752 CCTAGGGTGCCGATGGTGTCCGAGGCTCCCGCACGA-CCAGGGGCCTAGGGTGCCGATGGTGTCC
1 CCTAGGTTGCCGATGGTGTCCGAGGCTCCCGCAC-ATCCAAGCACC-AAGGTGCCGATGGTGCCC
*
97371816 GAGGCTCCCGCACGACCAGGGG
64 GAGGCTCCCGCACGACCAAGGG
* * * * ** *
97371838 CCTAGGATGCCGATGGTGTCTGAGGCTCCCGCA-AGACCAGGGGCCTAGGTGCCGATGGTGCCCG
1 CCTAGGTTGCCGATGGTGTCCGAGGCTCCCGCACA-TCCAAGCACCAAGGTGCCGATGGTGCCCG
97371902 AGGCTCCCGCACGACCAAGGG
65 AGGCTCCCGCACGACCAAGGG
* * * * ** *
97371923 CCTAGGATGCCGATGGTGTCTGAGGCTCCCGCA-AGACCAGGGGCCTAGGTGCCGATGGTGCCCG
1 CCTAGGTTGCCGATGGTGTCCGAGGCTCCCGCACA-TCCAAGCACCAAGGTGCCGATGGTGCCCG
*
97371987 AGGCTCCCGCACGACCAGGGG
65 AGGCTCCCGCACGACCAAGGG
* * * * ** *
97372008 CCTAGGATGCCGATGGTGTCTGAGGCTCCCGCA-AGACCAGGGGCCTAGGTGCCGATGGTGCCCG
1 CCTAGGTTGCCGATGGTGTCCGAGGCTCCCGCACA-TCCAAGCACCAAGGTGCCGATGGTGCCCG
*
97372072 AGGCTCCCGCACGACCAGGGG
65 AGGCTCCCGCACGACCAAGGG
* * * * ** *
97372093 CCTAGGATGCCGATGGTGTCTGAGGCTCCCGCA-AGACCAGGGGCCTAGGTGCCGATGGTGCCCG
1 CCTAGGTTGCCGATGGTGTCCGAGGCTCCCGCACA-TCCAAGCACCAAGGTGCCGATGGTGCCCG
*
97372157 AGGCTCCCGCACGACCAGGGG
65 AGGCTCCCGCACGACCAAGGG
* * * * ** *
97372178 CCTAGGATGCCGATGGTGTCTGAGGCTCCCGCA-AGACCAGGGGCCTAGGTGCCGATGGTGCCCG
1 CCTAGGTTGCCGATGGTGTCCGAGGCTCCCGCACA-TCCAAGCACCAAGGTGCCGATGGTGCCCG
*
97372242 AGGCTCCCGCACGACCAGGGG
65 AGGCTCCCGCACGACCAAGGG
* * * * ** *
97372263 CCTAGGATGCCGATGGTGTCTGAGGCTCCCGCA-AGACCAGGGGCCTAGGTGCCGATGGTGCCCG
1 CCTAGGTTGCCGATGGTGTCCGAGGCTCCCGCACA-TCCAAGCACCAAGGTGCCGATGGTGCCCG
*
97372327 AGGCTCCCGCACGACCAGGGG
65 AGGCTCCCGCACGACCAAGGG
* * * * ** *
97372348 CCTAGGATGCCGATGGTGTCTGAGGCTCCCGCA-AGACCAGGGGCCTAGGTGCCGATGGTGCCCG
1 CCTAGGTTGCCGATGGTGTCCGAGGCTCCCGCACA-TCCAAGCACCAAGGTGCCGATGGTGCCCG
*
97372412 AGGCTCCCGCACGACCAGGGG
65 AGGCTCCCGCACGACCAAGGG
* * *
97372433 CCTAGGTTACCGATGGTGTCCGAGGCTCCCGCACATCCAAGCTCCAAGGTGCCGATGGTGCCCAA
1 CCTAGGTTGCCGATGGTGTCCGAGGCTCCCGCACATCCAAGCACCAAGGTGCCGATGGTGCCCGA
97372498 GGCTCCCGCACGACCAAGGG
66 GGCTCCCGCACGACCAAGGG
* * *
97372518 CCTAGGTTGCCGATGGTGTCCGAGGCTCCCACACGA-CCAAGGGCA-TAAGTTGCCGATGGTG-C
1 CCTAGGTTGCCGATGGTGTCCGAGGCTCCCGCAC-ATCCAA--GCACCAAGGTGCCGATGGTGCC
*
97372580 CGAGGCTCGCGCACGACCAAGGG
63 CGAGGCTCCCGCACGACCAAGGG
* * * * ** *
97372603 CCTAGGTTACCGATGGTGCCCGAGGTTCCCGAACGA-CCAAGGGCCTAGGTTGCCGATGGTGCCC
1 CCTAGGTTGCCGATGGTGTCCGAGGCTCCCGCAC-ATCCAAGCACCAAGG-TGCCGATGGTGCCC
97372667 GAGGCTCCCGCACGACCAAGGG
64 GAGGCTCCCGCACGACCAAGGG
* * * ** * * *
97372689 CCTAGGTTACCGATGGTGGCCGAGGCTCCCGCACAACCAAGGGCCTAGGTTGCTGATGGTGTCCG
1 CCTAGGTTGCCGATGGTGTCCGAGGCTCCCGCACATCCAAGCACCAAGG-TGCCGATGGTGCCCG
97372754 AGGCTCC
65 AGGCTCC
97372761 TGCATATCCA
Statistics
Matches: 2114, Mismatches: 201, Indels: 106
0.87 0.08 0.04
Matches are distributed among these distances:
83 66 0.03
84 191 0.09
85 1354 0.64
86 493 0.23
87 10 0.00
ACGTcount: A:0.17, C:0.33, G:0.35, T:0.15
Consensus pattern (85 bp):
CCTAGGTTGCCGATGGTGTCCGAGGCTCCCGCACATCCAAGCACCAAGGTGCCGATGGTGCCCGA
GGCTCCCGCACGACCAAGGG
Found at i:97370845 original size:255 final size:256
Alignment explanation
Indices: 97370307--97372760 Score: 3169
Period size: 255 Copynumber: 9.6 Consensus size: 256
97370297 CATCCAACGT
* * * ** * * *
97370307 CCTAGGTTGCCTATGGTGTCCGAGGCTCCTGCACATCCAAGCACCAAGGTGCCAATGCTGCTCGA
1 CCTAGGTTGCCGATGGTGTCCGAGGCTCCCGCACA-CCAGGGGCCAAGGTGCCGATGGTGCCCGA
* * * * * ** *
97370372 GGCTCTCGCAC-ATCCGAGGCACCAAGG-TGCCGATGGTTCTTGAGGCTCCCGCACCACCAAGGG
65 GGCTCCCGCACGA-CCAAGG-GCCTAGGATGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* * * * * *
97370435 CCTAGGTTACCGATGGTGCCCGAGGCTCCGGCACGACCAAGGGCCTAGGTTGCCGATGGTGTCTG
128 CCTAGGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAGGGGCCTAGGGTGCCGATGGTGTCCG
* ** * * *
97370500 AGGCTCCCGCAC-ATCCAAGCACC-AAGATGCCGATGGTGCCCGAGGCTCCCGCACGACTAGGGG
193 AGGCTCCCGCACGA-CCAGGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAGGGG
* * ** *
97370563 CCTAGGTTACCGATGGTGTCCGAGGCTCCCGCACATCCAAGCTCCAAGGTGCCGATGGTGCCCAA
1 CCTAGGTTGCCGATGGTGTCCGAGGCTCCCGCACA-CCAGGGGCCAAGGTGCCGATGGTGCCCGA
* * *
97370628 GGCTCCCGCACGACCAAGGGCCTAGG-TGCGGATGGT-CCCGATGCTCTCGCACGACCAAGGGCC
65 GGCTCCCGCACGACCAAGGGCCTAGGATGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCC
* * *
97370691 TAGGGTGCCGATGGTGCCCGAGGCTCTCGCACGACCAGGGGCATAGGGTGCCGATGGTGCCCGAG
130 TAGGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAGGGGCCTAGGGTGCCGATGGTGTCCGAG
*
97370756 GCTCCTGCACGACCAGGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAGGGG
195 GCTCCCGCACGACCAGGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAGGGG
* * ** *
97370818 CCTAGGTTGTCGATGGTGTCCGAGGCTCCCGCACATCCAAGCTCCAAGGTGCCGATGGTGCCCAA
1 CCTAGGTTGCCGATGGTGTCCGAGGCTCCCGCACA-CCAGGGGCCAAGGTGCCGATGGTGCCCGA
* * *
97370883 GGCTCCCGCACGACCAAGGGCCTAGG-TGCGGATGGT-CCCGATGCTCTCGCACGACCAAGGGCC
65 GGCTCCCGCACGACCAAGGGCCTAGGATGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCC
* * *
97370946 TAGGGTGCCGATGGTGCCCGAGGCTCTCGCACGACCAGGGGCATAGGGTGCCGATGGTGCCCGAG
130 TAGGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAGGGGCCTAGGGTGCCGATGGTGTCCGAG
* *
97371011 GCTCCTGCACGACCAGGGGCCTAGGTTGCCGATGGTGCCCGAGGC-CCCACACGACCAGGGG
195 GCTCCCGCACGACCAGGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAGGGG
* * * * * *
97371072 CCAAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACTAGGGGCCTAGGTTACCGATGGTGTCCG
1 CCTAGGTTGCCGATGGTGTCCGAGGCTCCCGCAC-ACCAGGGGCCAAGG-TGCCGATGGTGCCCG
** * *
97371137 AGGCTCCCGCAC-ATCCAAGCTCCAAGG-TGCCGATGGTGCCCAAGGCTCCCGCACGACCAAGGG
64 AGGCTCCCGCACGA-CCAAGGGCCTAGGATGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* * * * *
97371200 CCTA-GGTGCGGATGGT-CCCGATGCTCTCGCACGACCAAGGGCCTAGGGTGCCGATGGTGCCCG
128 CCTAGGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAGGGGCCTAGGGTGCCGATGGTGTCCG
* * * *
97371263 AGGCTCTCGCACGACCAGGGGCATAGGGTGCCGATGGTGCCCGAGGCTCCTGCACGACCAGGGG
193 AGGCTCCCGCACGACCAGGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAGGGG
* *
97371327 CCTAGGTTGCCGATGGTGCCCGAGGC-CCCACACGACCAGGGGCCAAGGTTGCCGATGGTGCCCG
1 CCTAGGTTGCCGATGGTGTCCGAGGCTCCCGCAC-ACCAGGGGCCAAGG-TGCCGATGGTGCCCG
* * * * *
97371391 AGGCTCCCGCACGACCAGGGGCCTAGGATGCCGATGGTGTCTGAGGCTCCCGCAAGACCAGGGGC
64 AGGCTCCCGCACGACCAAGGGCCTAGGATGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGC
* * *
97371456 CTA-GGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAGGGGCCTAGGTTGTCGATGGTGCCCGA
129 CTAGGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAGGGGCCTAGGGTGCCGATGGTGTCCGA
* * * *
97371520 GGCTCCCGCACGACCGGGGGCCAAGGTTGCCGATGGT-CCCGAGGCTCCCGCACGACTAGAGG
194 GGCTCCCGCACGACCAGGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAGGGG
* *
97371582 CCTAGGTTGCCGATGGTGCCCGAGGC-CCCACACGACCAGGGGCCAAGGTTGCCGATGGTGCCCG
1 CCTAGGTTGCCGATGGTGTCCGAGGCTCCCGCAC-ACCAGGGGCCAAGG-TGCCGATGGTGCCCG
* * * *
97371646 AGGCTCCCGCACGACCAGGGGCCTAGGTTGCCAATGGT-CCCGAGGCTCCCGCATGACC-AGGAG
64 AGGCTCCCGCACGACCAAGGGCCTAGGATGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGG-G
* * *
97371709 CCTAGGTTGCCGATGGTGTCCGAGGCTCCCGTACGACCAGGGGCCTAGGGTGCCGATGGTGTCCG
128 CCTAGGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAGGGGCCTAGGGTGCCGATGGTGTCCG
* *
97371774 AGGCTCCCGCACGACCAGGGGCCTAGGGTGCCGATGGTGTCCGAGGCTCCCGCACGACCAGGGG
193 AGGCTCCCGCACGACCAGGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAGGGG
* * * *
97371838 CCTAGGATGCCGATGGTGTCTGAGGCTCCCGCAAGACCAGGGGCCTAGGTGCCGATGGTGCCCGA
1 CCTAGGTTGCCGATGGTGTCCGAGGCTCCCGC-ACACCAGGGGCCAAGGTGCCGATGGTGCCCGA
* * * *
97371903 GGCTCCCGCACGACCAAGGGCCTAGGATGCCGATGGTGTCTGAGGCTCCCGCAAGACCAGGGGCC
65 GGCTCCCGCACGACCAAGGGCCTAGGATGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCC
* *
97371968 TA-GGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAGGGGCCTAGGATGCCGATGGTGTCTGAG
130 TAGGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAGGGGCCTAGGGTGCCGATGGTGTCCGAG
*
97372032 GCTCCCGCAAGACCAGGGGCCTAGG-TGCCGATGGTGCCCGAGGCTCCCGCACGACCAGGGG
195 GCTCCCGCACGACCAGGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAGGGG
* * * *
97372093 CCTAGGATGCCGATGGTGTCTGAGGCTCCCGCAAGACCAGGGGCCTAGGTGCCGATGGTGCCCGA
1 CCTAGGTTGCCGATGGTGTCCGAGGCTCCCGC-ACACCAGGGGCCAAGGTGCCGATGGTGCCCGA
* * * * *
97372158 GGCTCCCGCACGACCAGGGGCCTAGGATGCCGATGGTGTCTGAGGCTCCCGCAAGACCAGGGGCC
65 GGCTCCCGCACGACCAAGGGCCTAGGATGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCC
* *
97372223 TA-GGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAGGGGCCTAGGATGCCGATGGTGTCTGAG
130 TAGGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAGGGGCCTAGGGTGCCGATGGTGTCCGAG
*
97372287 GCTCCCGCAAGACCAGGGGCCTAGG-TGCCGATGGTGCCCGAGGCTCCCGCACGACCAGGGG
195 GCTCCCGCACGACCAGGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAGGGG
* * * *
97372348 CCTAGGATGCCGATGGTGTCTGAGGCTCCCGCAAGACCAGGGGCCTAGGTGCCGATGGTGCCCGA
1 CCTAGGTTGCCGATGGTGTCCGAGGCTCCCGC-ACACCAGGGGCCAAGGTGCCGATGGTGCCCGA
* * * * **
97372413 GGCTCCCGCACGACCAGGGGCCTAGGTTACCGATGGTGTCCGAGGCTCCCGCAC-ATCCAAGCTC
65 GGCTCCCGCACGACCAAGGGCCTAGGATGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGC
* * * *
97372477 C-AAGGTGCCGATGGTGCCCAAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGTCCGA
129 CTAGGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAGGGGCCTAGGGTGCCGATGGTGTCCGA
* * * * * *
97372541 GGCTCCCACACGACCAAGGGCATAAGTTGCCGATGGTG-CCGAGGCTCGCGCACGACCAAGGG
194 GGCTCCCGCACGACCAGGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAGGGG
* * * * * *
97372603 CCTAGGTTACCGATGGTGCCCGAGGTTCCCGAACGACCAAGGGCCTAGGTTGCCGATGGTGCCCG
1 CCTAGGTTGCCGATGGTGTCCGAGGCTCCCGCAC-ACCAGGGGCCAAGG-TGCCGATGGTGCCCG
* * * *
97372668 AGGCTCCCGCACGACCAAGGGCCTAGGTTACCGATGGTGGCCGAGGCTCCCGCACAACCAAGGGC
64 AGGCTCCCGCACGACCAAGGGCCTAGGATGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGC
* * *
97372733 CTAGGTTGCTGATGGTGTCCGAGGCTCC
129 CTAGGGTGCCGATGGTGCCCGAGGCTCC
97372761 TGCATATCCA
Statistics
Matches: 2005, Mismatches: 168, Indels: 49
0.90 0.08 0.02
Matches are distributed among these distances:
253 2 0.00
254 314 0.16
255 1189 0.59
256 435 0.22
257 62 0.03
258 3 0.00
ACGTcount: A:0.17, C:0.33, G:0.35, T:0.15
Consensus pattern (256 bp):
CCTAGGTTGCCGATGGTGTCCGAGGCTCCCGCACACCAGGGGCCAAGGTGCCGATGGTGCCCGAG
GCTCCCGCACGACCAAGGGCCTAGGATGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCT
AGGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAGGGGCCTAGGGTGCCGATGGTGTCCGAGG
CTCCCGCACGACCAGGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAGGGG
Found at i:97373050 original size:24 final size:25
Alignment explanation
Indices: 97373018--97373088 Score: 83
Period size: 24 Copynumber: 2.9 Consensus size: 25
97373008 TTCCAGGATG
97373018 GCTCACCGGAGCACCGCCGGGAA-A
1 GCTCACCGGAGCACCGCCGGGAATA
* * *
97373042 GCTCACCGGACCACCG-CTGGAATG
1 GCTCACCGGAGCACCGCCGGGAATA
* *
97373066 GATCATCGGAGCACCGCCGGGAA
1 GCTCACCGGAGCACCGCCGGGAA
97373089 CCTAACCGGC
Statistics
Matches: 38, Mismatches: 7, Indels: 3
0.79 0.15 0.06
Matches are distributed among these distances:
23 5 0.13
24 28 0.74
25 5 0.13
ACGTcount: A:0.24, C:0.35, G:0.32, T:0.08
Consensus pattern (25 bp):
GCTCACCGGAGCACCGCCGGGAATA
Done.