Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr3
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 100348136
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 3062571 characters in sequence are not A, C, G, or T
File 282 of 290
Found at i:97379733 original size:58 final size:59
Alignment explanation
Indices: 97379664--97379784 Score: 190
Period size: 58 Copynumber: 2.1 Consensus size: 59
97379654 GGGAGGGACA
* * *
97379664 GGGACGATTCATTCATTGTTGGGTACCGAACATGCAACGGTATCTGAATTCTAGC-TTT
1 GGGACGATTCATTCATTATTGGGTACCGAACATGCAACAGTATCTGAATTCTACCTTTT
* *
97379722 GGGACGGTTCATTCATTATTGGGTACCGAACATGTAACAGTATCTGAATTCTACCTTTT
1 GGGACGATTCATTCATTATTGGGTACCGAACATGCAACAGTATCTGAATTCTACCTTTT
97379781 GGGA
1 GGGA
97379785 TTGGGGAGGG
Statistics
Matches: 57, Mismatches: 5, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
58 50 0.88
59 7 0.12
ACGTcount: A:0.25, C:0.18, G:0.24, T:0.33
Consensus pattern (59 bp):
GGGACGATTCATTCATTATTGGGTACCGAACATGCAACAGTATCTGAATTCTACCTTTT
Found at i:97379872 original size:24 final size:24
Alignment explanation
Indices: 97379821--97379872 Score: 68
Period size: 24 Copynumber: 2.2 Consensus size: 24
97379811 TGTATATCCT
* * *
97379821 GGGATGGATCGCCGGATCATCGCT
1 GGGATGGATCGCCGGAGCACCGCC
*
97379845 GGGATGGATCGTCGGAGCACCGCC
1 GGGATGGATCGCCGGAGCACCGCC
97379869 GGGA
1 GGGA
97379873 ACCTAACCGG
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.17, C:0.25, G:0.42, T:0.15
Consensus pattern (24 bp):
GGGATGGATCGCCGGAGCACCGCC
Found at i:97390701 original size:80 final size:80
Alignment explanation
Indices: 97390459--97390716 Score: 249
Period size: 80 Copynumber: 3.2 Consensus size: 80
97390449 TTGAATGATG
* * * * * * **
97390459 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAACTGACCATATCCGGACTAAGAT-CCGAAGGCAT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCAT
* ** *
97390522 TCGTGCGAGAT-ACTAAT
64 TTGAACGAG-TGACTAAA
*
97390539 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTT
*** *
97390603 TTGCGAGTTACTAAA
66 GAACGAGTGACTAAA
*
97390618 TCCGGGTTAAGTCCCGAAGGCATTTTTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTT
*
97390683 GAACGAG-GAGCTATA
66 GAACGAGTGA-CTAAA
* *
97390698 TCC-GGTTAAATTCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
97390717 TACGTGATTT
Statistics
Matches: 154, Mismatches: 19, Indels: 11
0.84 0.10 0.06
Matches are distributed among these distances:
78 2 0.01
79 71 0.46
80 81 0.53
ACGTcount: A:0.26, C:0.22, G:0.26, T:0.26
Consensus pattern (80 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTT
GAACGAGTGACTAAA
Found at i:97390702 original size:40 final size:40
Alignment explanation
Indices: 97390459--97390683 Score: 285
Period size: 40 Copynumber: 5.7 Consensus size: 40
97390449 TTGAATGATG
* * * * * *
97390459 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAACTGACCATA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
** * * *
97390499 TCCGGACTAAGAT-CCGAAGGCATTCGTGCGAGATACTAAT
1 TCCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
97390539 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
97390578 TCCGGGTTAAGTCCCGAAGGCATTTTTGCGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
97390618 TCCGGGTTAAGTCCCGAAGGCATTTTTGCGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
97390658 TCCGGGTTAAGTCCCGAAGGCATTTG
1 TCCGGGTTAAGTCCCGAAGGCATTTG
97390684 AACGAGGAGC
Statistics
Matches: 165, Mismatches: 16, Indels: 8
0.87 0.08 0.04
Matches are distributed among these distances:
39 34 0.21
40 124 0.75
41 7 0.04
ACGTcount: A:0.25, C:0.23, G:0.26, T:0.26
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:97394702 original size:43 final size:42
Alignment explanation
Indices: 97394533--97395530 Score: 397
Period size: 43 Copynumber: 23.1 Consensus size: 42
97394523 TCTTTAGCCT
* * ** * * *
97394533 GCACATCCGAGGCACCAGGGTGCCCCTGCTGCTCGAGGCACCC
1 GCACATCC-AAGCACCAAGGTGCCGATGGTGCCCGAGGCTCCC
* * * * * *
97394576 GTACATCCAA-CGTCCTAGGTTGCCTATGGTGTCTGAGGCTCCC
1 GCACATCCAAGC-ACCAAGG-TGCCGATGGTGCCCGAGGCTCCC
* * * *
97394619 GCACATCCAAGCACTAAGGTGCCTATGCTGCTCGAGGCTCCC
1 GCACATCCAAGCACCAAGGTGCCGATGGTGCCCGAGGCTCCC
* * * *
97394661 GCACATCCGAGGTACCAAGGTGACGATGGTGCCCGACGCTCCC
1 GCACATCC-AAGCACCAAGGTGCCGATGGTGCCCGAGGCTCCC
** * * *
97394704 GCACGA-CCAAGGGCCTAGGTTGCCGATGGTGTCCGAGGTTCCC
1 GCAC-ATCCAAGCACCAAGG-TGCCGATGGTGCCCGAGGCTCCC
* * *
97394747 ACACATCCAAGCACCAAGGTGCCGATGATGCCTGAGGCTCCC
1 GCACATCCAAGCACCAAGGTGCCGATGGTGCCCGAGGCTCCC
* ** * * * *
97394789 GCACGA-CCAGGGGCCTAGGTTACCGATAGTGTCCGAGGCTCCC
1 GCAC-ATCCAAGCACCAAGG-TGCCGATGGTGCCCGAGGCTCCC
*
97394832 GCACATCCAAGCACCAAGGTGCCGATAGTGCCCGAGGCTCCC
1 GCACATCCAAGCACCAAGGTGCCGATGGTGCCCGAGGCTCCC
** * * *
97394874 GCACGA-CCAAGGGCCTAGATGCCGATGGT-CCCGAGGCTCTC
1 GCAC-ATCCAAGCACCAAGGTGCCGATGGTGCCCGAGGCTCCC
* ** * *
97394915 ACACGA-CCAAGGGCCTAGGATGCCGATGGTGCCCGAGGCTCTC
1 GCAC-ATCCAAGCACCAAGG-TGCCGATGGTGCCCGAGGCTCCC
* ** * *
97394958 GCACGA-CCAGGGGCCTAGGGTACCGATGGTGCCCGAGGCTCCC
1 GCAC-ATCCAAGCACC-AAGGTGCCGATGGTGCCCGAGGCTCCC
* ** * *
97395001 GCACGA-CCAGGGGCCTAGGTTGCAGATGGTGCCCGAGGCTCCC
1 GCAC-ATCCAAGCACCAAGG-TGCCGATGGTGCCCGAGGCTCCC
* ** **
97395044 GCACGA-CCAGGGGCTTAGGTTGCCGATGGT-CCCGAGGCTCCC
1 GCAC-ATCCAAGCACCAAGG-TGCCGATGGTGCCCGAGGCTCCC
* * ** * * *
97395086 GTACGA-CCAGGGGCCTAGGTTGCCGATGGTGTCCGGGGCTCCC
1 GCAC-ATCCAAGCACCAAGG-TGCCGATGGTGCCCGAGGCTCCC
** * * *
97395129 GCACGA-CCAAGGGCCTAGGCTGCCGATGGTACCCGAGGCTCCT
1 GCAC-ATCCAAGCACCAAGG-TGCCGATGGTGCCCGAGGCTCCC
* * * * * *
97395172 GTACGA-CTAGGGGA-CTAGGATGCCGATGGTGCCCGAAGCTCCC
1 GCAC-ATCCA-AGCACCAAGG-TGCCGATGGTGCCCGAGGCTCCC
* * * *
97395215 GCACGA-CTAGAG-GCCTAGGTTGCCGATGGTGTCCGAGGCTCCC
1 GCAC-ATCCA-AGCACCAAGG-TGCCGATGGTGCCCGAGGCTCCC
*
97395258 GCACGA-CCAGGCCGCACGACCAAGGGCCTAGGTGCCGATGGTGCCCGAGGCTCCC
1 GCAC-ATCCA------A-G--C-A---CCAAGGTGCCGATGGTGCCCGAGGCTCCC
* * *
97395313 GCACGA-CCAATG-GCCTAGGTTGCCGATGGTGTCCGAGGCTCCC
1 GCAC-ATCCAA-GCACCAAGG-TGCCGATGGTGCCCGAGGCTCCC
** * * *
97395356 GCACGA-CCAAG-GGCATAGGTTGTCGATGGT-ACCGAGGCTCTC
1 GCAC-ATCCAAGCACCA-AGG-TGCCGATGGTGCCCGAGGCTCCC
** * *
97395398 GCACGA-CCAAGGGCCTAGGTTGCCGATGGTGGCCGAGGCTCCC
1 GCAC-ATCCAAGCACCAAGG-TGCCGATGGTGCCCGAGGCTCCC
** * * *
97395441 GCACGA-CCAAGGGCCTAGGTTGCCGATGGTGTCCGAGGCTCCT
1 GCAC-ATCCAAGCACCAAGG-TGCCGATGGTGCCCGAGGCTCCC
* * * * *
97395484 GCATATCGAAGGCACCAAGGTGCCGATGCTGCTCGAGGCTCTC
1 GCACATCCAA-GCACCAAGGTGCCGATGGTGCCCGAGGCTCCC
97395527 GCAC
1 GCAC
97395531 GACTGACGTC
Statistics
Matches: 783, Mismatches: 135, Indels: 74
0.79 0.14 0.07
Matches are distributed among these distances:
41 29 0.04
42 211 0.27
43 490 0.63
44 12 0.02
48 1 0.00
49 3 0.00
55 31 0.04
56 6 0.01
ACGTcount: A:0.18, C:0.33, G:0.32, T:0.16
Consensus pattern (42 bp):
GCACATCCAAGCACCAAGGTGCCGATGGTGCCCGAGGCTCCC
Found at i:97394702 original size:85 final size:83
Alignment explanation
Indices: 97394596--97395482 Score: 543
Period size: 85 Copynumber: 10.3 Consensus size: 83
97394586 CGTCCTAGGT
* * * *
97394596 TGCCTATGGTGTCTGAGGCTCCCGCAC-ATCCAAGCACTAAGG-TGCCTATGCTG-CTCGAGGCT
1 TGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGC-CT-AGGTTGCCGATGCTGTC-CGAGGCT
* *
97394658 CCCGCACATCCGAGGTACCAAGG
62 CCCGCACATCC-AAGCACCAAGG
* * * *
97394681 TGACGATGGTGCCCGACGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGTCCGAGGTTCC
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAA--GCCTAGGTTGCCGATGCTGTCCGAGGCTCC
*
97394746 CACACATCCAAGCACCAAGG
64 CGCACATCCAAGCACCAAGG
* * * *
97394766 TGCCGATGATGCCTGAGGCTCCCGCACGACCAGGGGCCTAGGTTACCGATAG-TGTCCGAGGCTC
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCA--AGCCTAGGTTGCCGAT-GCTGTCCGAGGCTC
97394830 CCGCACATCCAAGCACCAAGG
63 CCGCACATCCAAGCACCAAGG
* *
97394851 TGCCGATAGTGCCCGAGGCTCCCGCACGACCAAGGGCCTA-GATGCCGATG--GTCCCGAGGCTC
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAA--GCCTAGGTTGCCGATGCTGT-CCGAGGCTC
* * ** *
97394913 TCACACGA-CCAAGGGCCTAGG
63 CCGCAC-ATCCAAGCACCAAGG
* * * * * *
97394934 ATGCCGATGGTGCCCGAGGCTCTCGCACGACCAGGGGCCTAGGGTACCGATGGTGCCCGAGGCTC
1 -TGCCGATGGTGCCCGAGGCTCCCGCACGACCA--AGCCTAGGTTGCCGATGCTGTCCGAGGCTC
* ** *
97394999 CCGCACGA-CCAGGGGCCTAGG
63 CCGCAC-ATCCAAGCACCAAGG
* * *
97395020 TTGCAGATGGTGCCCGAGGCTCCCGCACGACCAGGGGCTTAGGTTGCCGATG--GTCCCGAGGCT
1 -TGCCGATGGTGCCCGAGGCTCCCGCACGACCA--AGCCTAGGTTGCCGATGCTGT-CCGAGGCT
* * ** *
97395083 CCCGTACGA-CCAGGGGCCTAGG
62 CCCGCAC-ATCCAAGCACCAAGG
* * * * **
97395105 TTGCCGATGGTGTCCGGGGCTCCCGCACGACCAAGGGCCTAGGCTGCCGATGGTACCCGAGGCTC
1 -TGCCGATGGTGCCCGAGGCTCCCGCACGACCAA--GCCTAGGTTGCCGATGCTGTCCGAGGCTC
* * * * * *
97395170 CTGTACGA-CTAGGGGA-CTAGG
63 CCGCAC-ATCCA-AGCACCAAGG
* * *
97395191 ATGCCGATGGTGCCCGAAGCTCCCGCACGACTAGAGGCCTAGGTTGCCGATGGTGTCCGAGGCTC
1 -TGCCGATGGTGCCCGAGGCTCCCGCACGACCA-A-GCCTAGGTTGCCGATGCTGTCCGAGGCTC
*
97395256 CCGCACGA-CCAGGCCGCACGACCAAGGGCCTAGG
63 CCGCAC-ATCCA------A-G--C-A---CCAAGG
*
97395290 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAATGGCCTAGGTTGCCGATGGTGTCCGAGGCTCC
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAA--GCCTAGGTTGCCGATGCTGTCCGAGGCTCC
**
97395355 CGCACGA-CCAAG-GGCATAGG
64 CGCAC-ATCCAAGCACCA-AGG
* * * * *
97395375 TTGTCGATGGT-ACCGAGGCTCTCGCACGACCAAGGGCCTAGGTTGCCGATGGTGGCCGAGGCTC
1 -TGCCGATGGTGCCCGAGGCTCCCGCACGACCAA--GCCTAGGTTGCCGATGCTGTCCGAGGCTC
** *
97395439 CCGCACGA-CCAAGGGCCTAGG
63 CCGCAC-ATCCAAGCACCAAGG
*
97395460 TTGCCGATGGTGTCCGAGGCTCC
1 -TGCCGATGGTGCCCGAGGCTCC
97395483 TGCATATCGA
Statistics
Matches: 672, Mismatches: 87, Indels: 85
0.80 0.10 0.10
Matches are distributed among these distances:
82 2 0.00
83 24 0.04
84 45 0.07
85 304 0.45
86 208 0.31
87 8 0.01
91 1 0.00
92 2 0.00
95 1 0.00
97 1 0.00
98 71 0.11
99 5 0.01
ACGTcount: A:0.18, C:0.33, G:0.33, T:0.16
Consensus pattern (83 bp):
TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGCCTAGGTTGCCGATGCTGTCCGAGGCTCCCG
CACATCCAAGCACCAAGG
Found at i:97394766 original size:128 final size:128
Alignment explanation
Indices: 97394589--97395482 Score: 939
Period size: 128 Copynumber: 6.9 Consensus size: 128
97394579 CATCCAACGT
* * * * *
97394589 CCTAGGTTGCCTATGGTGTCTGAGGCTCCCGCAC-ATCCAA--GCACTAAGGTGCCTATGCTGCT
1 CCTAGGTTGCCGATGGTGTCCGAGGCTCCCGCACGA-CCAAGGGC-CT-AGGTGCCGATGGTGCC
** * * *
97394651 CGAGGCTCCCGCAC-ATCCGAGGTACCAAGG-TGACGATGGTGCCCGACGCTCCCGCACGACCAA
63 CGAGGCTCCCGCACGA-CC-AGGGGCCTAGGATGCCGATGGTGCCCGAGGCTCCCGCACGACCAA
97394714 GGG
126 GGG
* * ** * * *
97394717 CCTAGGTTGCCGATGGTGTCCGAGGTTCCCACAC-ATCCAAGCACCAAGGTGCCGATGATGCCTG
1 CCTAGGTTGCCGATGGTGTCCGAGGCTCCCGCACGA-CCAAGGGCCTAGGTGCCGATGGTGCCCG
* * * * **
97394781 AGGCTCCCGCACGACCAGGGGCCTAGGTTACCGATAGTGTCCGAGGCTCCCGCAC-ATCCAAGCA
65 AGGCTCCCGCACGACCAGGGGCCTAGGATGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGG
* * * *
97394845 CCAAGG-TGCCGATAGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGATGCCGATGGT-CCCGA
1 CCTAGGTTGCCGATGGTGTCCGAGGCTCCCGCACGACCAAGGGCCTAGGTGCCGATGGTGCCCGA
* * * * *
97394908 GGCTCTCACACGACCAAGGGCCTAGGATGCCGATGGTGCCCGAGGCTCTCGCACGACCAGGGG
66 GGCTCCCGCACGACCAGGGGCCTAGGATGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* * * * *
97394971 CCTAGGGTACCGATGGTGCCCGAGGCTCCCGCACGACCAGGGGCCTAGGTTGCAGATGGTGCCCG
1 CCTAGGTTGCCGATGGTGTCCGAGGCTCCCGCACGACCAAGGGCCTAGG-TGCCGATGGTGCCCG
* * * *
97395036 AGGCTCCCGCACGACCAGGGGCTTAGGTTGCCGATGGT-CCCGAGGCTCCCGTACGACCAGGGG
65 AGGCTCCCGCACGACCAGGGGCCTAGGATGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* *
97395099 CCTAGGTTGCCGATGGTGTCCGGGGCTCCCGCACGACCAAGGGCCTAGGCTGCCGATGGTACCCG
1 CCTAGGTTGCCGATGGTGTCCGAGGCTCCCGCACGACCAAGGGCCTAGG-TGCCGATGGTGCCCG
* * * * * *
97395164 AGGCTCCTGTACGACTAGGGGACTAGGATGCCGATGGTGCCCGAAGCTCCCGCACGA-CTAGAGG
65 AGGCTCCCGCACGACCAGGGGCCTAGGATGCCGATGGTGCCCGAGGCTCCCGCACGACCAAG-GG
97395228 CCTAGGTTGCCGATGGTGTCCGAGGCTCCCGCACGACCAGGCCGCACGACCAAGGGCCTAGGTGC
1 CCTAGGTTGCCGATGGTGTCCGAGGCT----------C---CCGCACGACCAAGGGCCTAGGTGC
** * *
97395293 CGATGGTGCCCGAGGCTCCCGCACGACCAATGGCCTAGGTTGCCGATGGTGTCCGAGGCTCCCGC
53 CGATGGTGCCCGAGGCTCCCGCACGACCAGGGGCCTAGGATGCCGATGGTGCCCGAGGCTCCCGC
97395358 ACGACCAAGGG
118 ACGACCAAGGG
* * * * *
97395369 CATAGGTTGTCGATGGT-ACCGAGGCTCTCGCACGACCAAGGGCCTAGGTTGCCGATGGTGGCCG
1 CCTAGGTTGCCGATGGTGTCCGAGGCTCCCGCACGACCAAGGGCCTAGG-TGCCGATGGTGCCCG
* * *
97395433 AGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGTCCGAGGCTCC
65 AGGCTCCCGCACGACCAGGGGCCTAGGATGCCGATGGTGCCCGAGGCTCC
97395483 TGCATATCGA
Statistics
Matches: 648, Mismatches: 91, Indels: 54
0.82 0.11 0.07
Matches are distributed among these distances:
126 59 0.09
127 109 0.17
128 283 0.44
129 83 0.13
130 2 0.00
139 1 0.00
140 8 0.01
141 79 0.12
142 24 0.04
ACGTcount: A:0.18, C:0.33, G:0.33, T:0.16
Consensus pattern (128 bp):
CCTAGGTTGCCGATGGTGTCCGAGGCTCCCGCACGACCAAGGGCCTAGGTGCCGATGGTGCCCGA
GGCTCCCGCACGACCAGGGGCCTAGGATGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
Found at i:97395308 original size:55 final size:56
Alignment explanation
Indices: 97395213--97395321 Score: 177
Period size: 55 Copynumber: 2.0 Consensus size: 56
97395203 CCCGAAGCTC
* *
97395213 CCGCACGACTAGAGGCCTAGGTTGCCGATGGTGTCCGAGGCTCCCGCACGACCAGG
1 CCGCACGACAAGAGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAGG
97395269 CCGCACGACCAAG-GGCCTAGG-TGCCGATGGTGCCCGAGGCTCCCGCACGACCA
1 CCGCACGA-CAAGAGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCA
97395322 ATGGCCTAGG
Statistics
Matches: 50, Mismatches: 2, Indels: 3
0.91 0.04 0.05
Matches are distributed among these distances:
55 31 0.62
56 16 0.32
57 3 0.06
ACGTcount: A:0.18, C:0.37, G:0.33, T:0.12
Consensus pattern (56 bp):
CCGCACGACAAGAGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAGG
Found at i:97395510 original size:312 final size:312
Alignment explanation
Indices: 97394957--97395550 Score: 874
Period size: 312 Copynumber: 1.9 Consensus size: 312
97394947 CCGAGGCTCT
* *
97394957 CGCACGACCAGGGGCCTAGGGTACCGATGGTGCCCGAGGCTCCCGCACGACCAGGGGCCTAGGTT
1 CGCACGACCAAGGGCCTAGGGTACCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTT
* * *
97395022 GCAGATGGTGCCCGAGGCTCCCGCACGACCAGGGGCTTAGGTTGCCGATGGTCCCGAGGCTCCCG
66 GCAGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCATAGGTTGCCGATGGTACCGAGGCTCCCG
* * * *
97395087 TACGACCAGGGGCCTAGGTTGCCGATGGTGTCCGGGGCTCCCGCACGACCAAGGGCCTAGGCTGC
131 CACGACCAAGGGCCTAGGTTGCCGATGGTGGCCGAGGCTCCCGCACGACCAAGGGCCTAGGCTGC
* * *
97395152 CGATGGTACCCGAGGCTCCTGTACGACTAGGGGACTAGGATGCCGATGGTGCCCGAAGCTCCCGC
196 CGATGGTACCCGAGGCTCCTGTACGAC-AGGGCACAAGGATGCCGATGCTGCCCGAAGCTCCCGC
97395217 ACGACTAGA-GGCCTAGGTTGCCGATGGTGTCCGAGGCTCCCGCACGACCAGGC
260 ACGACT-GACGGCCTAGGTTGCCGATGGTGTCCGAGGCTCCCGCACGACCAGGC
* *
97395270 CGCACGACCAAGGGCCTA-GGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAATGGCCTAGGTT
1 CGCACGACCAAGGGCCTAGGGTACCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTT
* * * *
97395334 GCCGATGGTGTCCGAGGCTCCCGCACGACCAAGGGCATAGGTTGTCGATGGTACCGAGGCTCTCG
66 GCAGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCATAGGTTGCCGATGGTACCGAGGCTCCCG
*
97395399 CACGACCAAGGGCCTAGGTTGCCGATGGTGGCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGC
131 CACGACCAAGGGCCTAGGTTGCCGATGGTGGCCGAGGCTCCCGCACGACCAAGGGCCTAGGCTGC
** * * *
97395464 CGATGGTGTCCGAGGCTCCTGCATATCGA-A-GGCACCAAGG-TGCCGATGCTGCTCGAGGCTCT
196 CGATGGTACCCGAGGCTCCTG--TA-CGACAGGGCA-CAAGGATGCCGATGCTGCCCGAAGCTCC
*
97395526 CGCACGACTGACGTCCTAGGTTGCC
257 CGCACGACTGACGGCCTAGGTTGCC
97395551 TAGTTGTGGG
Statistics
Matches: 251, Mismatches: 25, Indels: 11
0.87 0.09 0.04
Matches are distributed among these distances:
311 2 0.01
312 222 0.88
313 22 0.09
314 2 0.01
315 3 0.01
ACGTcount: A:0.17, C:0.32, G:0.35, T:0.16
Consensus pattern (312 bp):
CGCACGACCAAGGGCCTAGGGTACCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTT
GCAGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCATAGGTTGCCGATGGTACCGAGGCTCCCG
CACGACCAAGGGCCTAGGTTGCCGATGGTGGCCGAGGCTCCCGCACGACCAAGGGCCTAGGCTGC
CGATGGTACCCGAGGCTCCTGTACGACAGGGCACAAGGATGCCGATGCTGCCCGAAGCTCCCGCA
CGACTGACGGCCTAGGTTGCCGATGGTGTCCGAGGCTCCCGCACGACCAGGC
Found at i:97396326 original size:58 final size:59
Alignment explanation
Indices: 97396236--97396356 Score: 199
Period size: 58 Copynumber: 2.1 Consensus size: 59
97396226 GGGAGGAACA
* *
97396236 GGGACGATTCATTCATTGTTGGGTACCGAACATGCAACGGTATCTGAATTCTAGC-TTT
1 GGGACGATTCATTCATTATTGGGTACCGAACATGCAACGGTATCTGAATTCTACCTTTT
* *
97396294 GGGACGGTTCATTCATTATTGGGTACCGAACATGTAACGGTATCTGAATTCTACCTTTT
1 GGGACGATTCATTCATTATTGGGTACCGAACATGCAACGGTATCTGAATTCTACCTTTT
97396353 GGGA
1 GGGA
97396357 TTGGGGAGGG
Statistics
Matches: 58, Mismatches: 4, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
58 51 0.88
59 7 0.12
ACGTcount: A:0.24, C:0.18, G:0.25, T:0.33
Consensus pattern (59 bp):
GGGACGATTCATTCATTATTGGGTACCGAACATGCAACGGTATCTGAATTCTACCTTTT
Found at i:97400902 original size:40 final size:40
Alignment explanation
Indices: 97400664--97400894 Score: 263
Period size: 40 Copynumber: 5.8 Consensus size: 40
97400654 TTGAATGATG
* * * * *
97400664 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAATTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTACGAGTT-ACTAAA
* * * *
97400704 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTACGAGTTACTAAA
*
97400744 TCCGGGCTAAG-CCCGAAGGCATTGGTACGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTACGAGTTACTAAA
*
97400783 TCCGGGTTAAGTCCCGAAGGCATTTGTACGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTACGAGTTACTAAA
* * *
97400823 TCCGGGTTAAGTCCCGAAGGCAATTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTACGAGTTACTA-AA
* *
97400864 -CCGGGCTATGTCCCGAAGGCATTTGAACGAG
1 TCCGGGCTAAGTCCCGAAGGCATTTGTACGAG
97400895 GAGCTATATC
Statistics
Matches: 165, Mismatches: 21, Indels: 10
0.84 0.11 0.05
Matches are distributed among these distances:
39 33 0.20
40 120 0.73
41 12 0.07
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTACGAGTTACTAAA
Found at i:97400906 original size:80 final size:80
Alignment explanation
Indices: 97400703--97400921 Score: 227
Period size: 79 Copynumber: 2.8 Consensus size: 80
97400693 AATTGACCAT
* ** * *
97400703 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGAT-ACTAATTCCGGGCTAAG-CCCGAAGGCA
1 ATCCGGGCTAAG-TCCCGAAGGCATTTGAACGAG-TGACTAAATCCGGGTTAAGTCCCGAAGGCA
97400765 TTGGTACGAGTTACTAA
64 TTGGTACGAGTTACTAA
* * *
97400782 ATCCGGGTTAAGTCCCGAAGGCATTTGTACGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCAAT
1 ATCCGGGCTAAGTCCCGAAGGCATTTGAACGAGTGACTAAATCCGGGTTAAGTCCCGAAGGC-AT
*
97400847 T-GTGCGAGTTACTATA
65 TGGTACGAGTTACTA-A
* * * *
97400863 A-CCGGGCTATGTCCCGAAGGCATTTGAACGAG-GAGCTATATCC-GGTTAAATTCCGAAGG
1 ATCCGGGCTAAGTCCCGAAGGCATTTGAACGAGTGA-CTAAATCCGGGTTAAGTCCCGAAGG
97400922 TACGTGATTT
Statistics
Matches: 121, Mismatches: 13, Indels: 12
0.83 0.09 0.08
Matches are distributed among these distances:
78 2 0.02
79 58 0.48
80 56 0.46
81 5 0.04
ACGTcount: A:0.28, C:0.21, G:0.27, T:0.24
Consensus pattern (80 bp):
ATCCGGGCTAAGTCCCGAAGGCATTTGAACGAGTGACTAAATCCGGGTTAAGTCCCGAAGGCATT
GGTACGAGTTACTAA
Found at i:97404381 original size:195 final size:195
Alignment explanation
Indices: 97404045--97404436 Score: 730
Period size: 195 Copynumber: 2.0 Consensus size: 195
97404035 ACGCCAAGAC
97404045 AGCGATAGAGCTTATTCCTTATCGACTCCCTCGATGCGTCAAGGAAAGAGACGATATATCACCCC
1 AGCGATAGAGCTTATTCCTTATCGACTCCCTCGATGCGTCAAGGAAAGAGACGATATATCACCCC
97404110 GCAAAACTTGACCGTGAGGATCTTCGATCTTCCGTCAAAGAACAACCAAGAAACCAAGACCAACC
66 GCAAAACTTGACCGTGAGGATCTTCGATCTTCCGTCAAAGAACAACCAAGAAACCAAGACCAACC
* *
97404175 AAAAAGAAAGAAGGTGGACTCGCCGGAAAGCCAGCCCACCGACCCAAGGATTCAGCGCTCGAGCA
131 AAAAAGAAAGAAGGTGGACTCGCCGGAAAGCCAGCCCACCGACCCAAGGATCCAGCACTCGAGCA
97404240 AGCGATAGAGCTTATTCCTTATCGACTCCCTCGATGCGTCAAGGAAAGAGACGATATATCACCCC
1 AGCGATAGAGCTTATTCCTTATCGACTCCCTCGATGCGTCAAGGAAAGAGACGATATATCACCCC
97404305 GCAAAACTTGACCGTGAGGATCTTCGATCTTCCGTCAAAGAACAACCAAGAAACCAAGACCAACC
66 GCAAAACTTGACCGTGAGGATCTTCGATCTTCCGTCAAAGAACAACCAAGAAACCAAGACCAACC
* * * *
97404370 AGAATGAAAGAAGGTGGACTTGCCGGAAAGCCAGCCCTCCGACCCAAGGATCCAGCACTCGAGCA
131 AAAAAGAAAGAAGGTGGACTCGCCGGAAAGCCAGCCCACCGACCCAAGGATCCAGCACTCGAGCA
97404435 AG
1 AG
97404437 GAAAACCAAC
Statistics
Matches: 191, Mismatches: 6, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
195 191 1.00
ACGTcount: A:0.34, C:0.29, G:0.22, T:0.16
Consensus pattern (195 bp):
AGCGATAGAGCTTATTCCTTATCGACTCCCTCGATGCGTCAAGGAAAGAGACGATATATCACCCC
GCAAAACTTGACCGTGAGGATCTTCGATCTTCCGTCAAAGAACAACCAAGAAACCAAGACCAACC
AAAAAGAAAGAAGGTGGACTCGCCGGAAAGCCAGCCCACCGACCCAAGGATCCAGCACTCGAGCA
Found at i:97405760 original size:163 final size:162
Alignment explanation
Indices: 97405497--97405890 Score: 683
Period size: 163 Copynumber: 2.5 Consensus size: 162
97405487 GGCCCAAAAG
* *
97405497 AAATACAAGAAGTCGAATGAAATATGGCAT--AAT----GGCACGGAAGAAAATTGAACAAGTGC
1 AAATACAAGAAGCCGAATGAAATATGGCATGGAATGGACGGCACGGTAGAAAATTGAACAAGTGC
*
97405556 CTGGACCACGGCCCCCGTTGTGCCATGTTTCTTGAGGGGGCGACACGGCCAAGTGTTTAACTTAG
66 CTGGACCACGGCCCCCGGTGTGCCATGTTTCTTGAGGGGGCGACACGGCCAAGTGTTTAACTTAG
97405621 AAATTTTTTCTGTTGGCCCAAAACAAAAGAAC
131 AAATTTTTTCTGTTGGCCCAAAACAAAAGAAC
97405653 AAATACAAGAAGCCGAATGAAATATGGCATGGAATGGAACGGCACGGTAGAAAATTGAACAAGTG
1 AAATACAAGAAGCCGAATGAAATATGGCATGGAATGG-ACGGCACGGTAGAAAATTGAACAAGTG
97405718 CCTGGACCACGGCCCCCGGTGTGCCATGTTTCTTGAGGGGGCGACACGGCCAAGTGTTTAACTTA
65 CCTGGACCACGGCCCCCGGTGTGCCATGTTTCTTGAGGGGGCGACACGGCCAAGTGTTTAACTTA
97405783 GAAATTTTTTCTGTTGGCCCAAAACAAAAGAAC
130 GAAATTTTTTCTGTTGGCCCAAAACAAAAGAAC
*
97405816 AAATACAAGAAGCCGAATGAAATATGGCATGGCATGGCACGGCACGGTAGAAAATTGAACAAGTG
1 AAATACAAGAAGCCGAATGAAATATGGCATGGAATGG-ACGGCACGGTAGAAAATTGAACAAGTG
*
97405881 CCCGGACCAC
65 CCTGGACCAC
97405891 TAACTGTTGG
Statistics
Matches: 225, Mismatches: 6, Indels: 7
0.95 0.03 0.03
Matches are distributed among these distances:
156 29 0.13
158 3 0.01
163 193 0.86
ACGTcount: A:0.34, C:0.20, G:0.26, T:0.20
Consensus pattern (162 bp):
AAATACAAGAAGCCGAATGAAATATGGCATGGAATGGACGGCACGGTAGAAAATTGAACAAGTGC
CTGGACCACGGCCCCCGGTGTGCCATGTTTCTTGAGGGGGCGACACGGCCAAGTGTTTAACTTAG
AAATTTTTTCTGTTGGCCCAAAACAAAAGAAC
Found at i:97413079 original size:85 final size:84
Alignment explanation
Indices: 97412970--97413742 Score: 514
Period size: 85 Copynumber: 9.1 Consensus size: 84
97412960 TTTCTTTAGG
* * ** * * *
97412970 CCGCACATCCGAGGCACCAGGGTGCCCCTGCTGCTCGAGGCACCCGCACATCCAATGTCCTAGGT
1 CCGCACATCC-AAGCACCAAGGTGCCGATGCTGCTCGAGGCTCCCGCACA-CCAAGGGCCTAGGT
* *
97413035 TGCCTATGGTGTCCGAGGCTC
64 TACCGATGGTGTCCGAGGCTC
* * * * *
97413056 CCGCACATCCAAGCACCAAGGTGCCAATGCTGCTCGAGGCTCCCGTACATCCGAGGCACCAAGG-
1 CCGCACATCCAAGCACCAAGGTGCCGATGCTGCTCGAGGCTCCCGCACA-CCAAGG-GCCTAGGT
*
97413120 TACCGATGGTGCCCGAGGCTC
64 TACCGATGGTGTCCGAGGCTC
* * ** * * * *
97413141 TCGTACGA-CCAAGGGCCTAGGTTACCGATAG-TGCCCGAGGCTCCGGCACGACCAAGGGCCTAG
1 CCGCAC-ATCCAAGCACCAAGG-TGCCGAT-GCTGCTCGAGGCTCCCGCAC-ACCAAGGGCCTAG
* *
97413204 GTTGCCGATGGTGTCCGAGGCTT
62 GTTACCGATGGTGTCCGAGGCTC
* * * * * *
97413227 CCGTACATCCAAGCACCAAGGTGCTGGTGGTGC-CTGAAGCTCCCGCATGACCAAGGGCCTAGGT
1 CCGCACATCCAAGCACCAAGGTGCCGATGCTGCTC-GAGGCTCCCGCA-CACCAAGGGCCTAGGT
97413291 TACCGATGGTGTCCGAGGCTC
64 TACCGATGGTGTCCGAGGCTC
* * *
97413312 CCGCACATCCAAGCACCAAGGTGTCGATGGTGGC-CGAGGCTCCTGCACGACCAAGGGCCTAGG-
1 CCGCACATCCAAGCACCAAGGTGCCGATGCT-GCTCGAGGCTCCCGCAC-ACCAAGGGCCTAGGT
* *
97413375 TGCCGATGGT-CCCGAGGCTC
64 TACCGATGGTGTCCGAGGCTC
* ** ** * * * * * *
97413395 CCGCACGAT-CAGGGGCTTAGGTTACCAATGGTGTTTGAGGCTCCCGCACGACCAGGGGCCTAGG
1 CCGCAC-ATCCAAGCACCAAGG-TGCCGATGCTGCTCGAGGCTCCCGCAC-ACCAAGGGCCTAGG
* * *
97413459 GTGCCGATGGTGTCCAAGGCTC
63 TTACCGATGGTGTCCGAGGCTC
* * ** * *
97413481 CCGCA-AGACCAGGGGCCTAGGGTGCCGATGGTG-TCTGAGGCTCCCGCACGACCAAGGGCCTAG
1 CCGCACA-TCCAAGCACC-AAGGTGCCGATGCTGCTC-GAGGCTCCCGCAC-ACCAAGGGCCTAG
* *
97413544 G-TGCCGATGGTGCCCGAGGCTC
62 GTTACCGATGGTGTCCGAGGCTC
** * * * *
97413566 CCGCACGA-CCAAGGGCCTAGGTTGCCGATGGTG-TCCGAGGCTCTCGCACGACCAAGGGCATAG
1 CCGCAC-ATCCAAGCACCAAGG-TGCCGATGCTGCT-CGAGGCTCCCGCAC-ACCAAGGGCCTAG
*
97413629 GTTGCCGATGGTG-CCGAGGCTC
62 GTTACCGATGGTGTCCGAGGCTC
* ** * * * * * *
97413651 TCGCACGA-CCAAGGGCCTAGGTTGCCAATGGTGCCCGAGGCTCCTGCATGACCAAGGGCCTAGG
1 CCGCAC-ATCCAAGCACCAAGG-TGCCGATGCTGCTCGAGGCTCCCGCA-CACCAAGGGCCTAGG
* *
97413715 TTGCCGATGGTGCCCGAGGCTC
63 TTACCGATGGTGTCCGAGGCTC
*
97413737 CTGCAC
1 CCGCAC
97413743 GACCAAGGGT
Statistics
Matches: 570, Mismatches: 88, Indels: 58
0.80 0.12 0.08
Matches are distributed among these distances:
83 23 0.04
84 49 0.09
85 335 0.59
86 158 0.28
87 5 0.01
ACGTcount: A:0.18, C:0.32, G:0.32, T:0.17
Consensus pattern (84 bp):
CCGCACATCCAAGCACCAAGGTGCCGATGCTGCTCGAGGCTCCCGCACACCAAGGGCCTAGGTTA
CCGATGGTGTCCGAGGCTC
Found at i:97413243 original size:128 final size:127
Alignment explanation
Indices: 97413005--97413780 Score: 723
Period size: 128 Copynumber: 6.1 Consensus size: 127
97412995 CCCTGCTGCT
* * * * * *
97413005 CGAGGCACCCGCAC-ATCCAATGTCCTAGGTTGCCTATGGTGTCCGAGGCTCCCGCAC-ATCCAA
1 CGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTACCGATGGTGCCCGAGGCTCCCGCACGA-CCAA
** * * * * * * * *
97413068 GCACCAAGG-TGCCAATGCTG-CTCGAGGCTCCCGTACATCCGAGGCACCAAGGTACCGATGGTG
64 GGGCCTAGGTTGCCGATGGTGTC-CGAGGCTTCCGCACA-CC-AAGCGCCAAGGTGCCGATGGTG
97413131 CC
126 CC
* * * *
97413133 CGAGGCTCTCGTACGACCAAGGGCCTAGGTTACCGATAGTGCCCGAGGCTCCGGCACGACCAAGG
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTACCGATGGTGCCCGAGGCTCCCGCACGACCAAGG
* * * *
97413198 GCCTAGGTTGCCGATGGTGTCCGAGGCTTCCGTACATCCAAGCACCAAGGTGCTGGTGGTGCC
66 GCCTAGGTTGCCGATGGTGTCCGAGGCTTCCGCACA-CCAAGCGCCAAGGTGCCGATGGTGCC
* * * *
97413261 TGAAGCTCCCGCATGACCAAGGGCCTAGGTTACCGATGGTGTCCGAGGCTCCCGCAC-ATCCAAG
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTACCGATGGTGCCCGAGGCTCCCGCACGA-CCAAG
** * * * * *
97413325 CACCAAGG-TGTCGATGGTGGCCGAGGC-TCCTGCACGACCAAGGGCCTAGGTGCCGATGGT-CC
65 GGCCTAGGTTGCCGATGGTGTCCGAGGCTTCC-GCAC-ACCAAGCGCCAAGGTGCCGATGGTGCC
* * * * *** *
97413387 CGAGGCTCCCGCACGATCAGGGGCTTAGGTTACCAATGGTGTTTGAGGCTCCCGCACGACCAGGG
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTACCGATGGTGCCCGAGGCTCCCGCACGACCAAGG
* * * * * * * *
97413452 GCCTAGGGTGCCGATGGTGTCCAAGGCTCCCGCAAGACCAGGGGCCTAGGGTGCCGATGGTGTC
66 GCCTAGGTTGCCGATGGTGTCCGAGGCTTCCGC-ACACCAAGCGCC-AAGGTGCCGATGGTGCC
* *
97413516 TGAGGCTCCCGCACGACCAAGGGCCTAGG-TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGG
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTACCGATGGTGCCCGAGGCTCCCGCACGACCAAGG
*
97413580 GCCTAGGTTGCCGATGGTGTCCGAGGC-TCTCGCACGACCAAG-GGCATAGGTTGCCGATGGTG-
66 GCCTAGGTTGCCGATGGTGTCCGAGGCTTC-CGCAC-ACCAAGCGCCA-AGG-TGCCGATGGTGC
97413642 C
127 C
* * * * *
97413643 CGAGGCTCTCGCACGACCAAGGGCCTAGGTTGCCAATGGTGCCCGAGGCTCCTGCATGACCAAGG
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTACCGATGGTGCCCGAGGCTCCCGCACGACCAAGG
* * * * *
97413708 GCCTAGGTTGCCGATGGTGCCCGAGGC-TCCTGCACGACCAAGGGTCTAGGTTGCCGATGGTGTC
66 GCCTAGGTTGCCGATGGTGTCCGAGGCTTCC-GCAC-ACCAAGCGCCAAGG-TGCCGATGGTGCC
97413772 CGAGGCTCC
1 CGAGGCTCC
97413781 TGCATATCCA
Statistics
Matches: 540, Mismatches: 87, Indels: 41
0.81 0.13 0.06
Matches are distributed among these distances:
126 63 0.12
127 102 0.19
128 309 0.57
129 65 0.12
130 1 0.00
ACGTcount: A:0.18, C:0.31, G:0.33, T:0.17
Consensus pattern (127 bp):
CGAGGCTCCCGCACGACCAAGGGCCTAGGTTACCGATGGTGCCCGAGGCTCCCGCACGACCAAGG
GCCTAGGTTGCCGATGGTGTCCGAGGCTTCCGCACACCAAGCGCCAAGGTGCCGATGGTGCC
Found at i:97413809 original size:43 final size:43
Alignment explanation
Indices: 97413005--97413780 Score: 808
Period size: 43 Copynumber: 18.2 Consensus size: 43
97412995 CCCTGCTGCT
* * * *
97413005 CGAGGCACCCGCAC-ATCCAATGTCCTAGGTTGCCTATGGTGTC
1 CGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGCCGATGGTGTC
** * * *
97413048 CGAGGCTCCCGCAC-ATCCAAGCACCAAGG-TGCCAATGCTG-C
1 CGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGCCGATGGTGTC
* * * * * *
97413089 TCGAGGCTCCCGTAC-ATCCGAGGCACCAAGG-TACCGATGGTGCC
1 -CGAGGCTCCCGCACGA-CCAAGG-GCCTAGGTTGCCGATGGTGTC
* * * * *
97413133 CGAGGCTCTCGTACGACCAAGGGCCTAGGTTACCGATAGTGCC
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGTC
*
97413176 CGAGGCTCCGGCACGACCAAGGGCCTAGGTTGCCGATGGTGTC
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGTC
* * ** * * *
97413219 CGAGGCTTCCGTAC-ATCCAAGCACCAAGG-TGCTGGTGGTG-C
1 CGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGCCGATGGTGTC
* * *
97413260 CTGAAGCTCCCGCATGACCAAGGGCCTAGGTTACCGATGGTGTC
1 C-GAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGTC
** * * *
97413304 CGAGGCTCCCGCAC-ATCCAAGCACCAAGG-TGTCGATGGTGGC
1 CGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGCCGATGGTGTC
* *
97413346 CGAGGCTCCTGCACGACCAAGGGCCTAGG-TGCCGATGGT-CC
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGTC
* * * * * *
97413387 CGAGGCTCCCGCACGATCAGGGGCTTAGGTTACCAATGGTGTT
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGTC
* * *
97413430 TGAGGCTCCCGCACGACCAGGGGCCTAGGGTGCCGATGGTGTC
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGTC
* * * *
97413473 CAAGGCTCCCGCAAGACCAGGGGCCTAGGGTGCCGATGGTGTC
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGTC
* *
97413516 TGAGGCTCCCGCACGACCAAGGGCCTAGG-TGCCGATGGTGCC
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGTC
97413558 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGTC
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGTC
* *
97413601 CGAGGCTCTCGCACGACCAAGGGCATAGGTTGCCGATGGTG-C
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGTC
* * *
97413643 CGAGGCTCTCGCACGACCAAGGGCCTAGGTTGCCAATGGTGCC
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGTC
* * *
97413686 CGAGGCTCCTGCATGACCAAGGGCCTAGGTTGCCGATGGTGCC
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGTC
* *
97413729 CGAGGCTCCTGCACGACCAAGGGTCTAGGTTGCCGATGGTGTC
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGTC
97413772 CGAGGCTCC
1 CGAGGCTCC
97413781 TGCATATCCA
Statistics
Matches: 625, Mismatches: 92, Indels: 32
0.83 0.12 0.04
Matches are distributed among these distances:
41 29 0.05
42 193 0.31
43 399 0.64
44 4 0.01
ACGTcount: A:0.18, C:0.31, G:0.33, T:0.17
Consensus pattern (43 bp):
CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGTC
Found at i:97415401 original size:48 final size:48
Alignment explanation
Indices: 97415330--97415421 Score: 175
Period size: 48 Copynumber: 1.9 Consensus size: 48
97415320 TTTTGAAAAT
97415330 GCTTCCATGCAAAATAAAAAAAGGTAAGGAGAGAGAGGATCCCCCTGC
1 GCTTCCATGCAAAATAAAAAAAGGTAAGGAGAGAGAGGATCCCCCTGC
*
97415378 GCTTCTATGCAAAATAAAAAAAGGTAAGGAGAGAGAGGATCCCC
1 GCTTCCATGCAAAATAAAAAAAGGTAAGGAGAGAGAGGATCCCC
97415422 TGTCTTAAGC
Statistics
Matches: 43, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
48 43 1.00
ACGTcount: A:0.41, C:0.18, G:0.25, T:0.15
Consensus pattern (48 bp):
GCTTCCATGCAAAATAAAAAAAGGTAAGGAGAGAGAGGATCCCCCTGC
Found at i:97418447 original size:13 final size:13
Alignment explanation
Indices: 97418431--97418458 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
97418421 GAGAAAAATC
97418431 ACGCTACCAGGCG
1 ACGCTACCAGGCG
97418444 ACGCTACCAGGCG
1 ACGCTACCAGGCG
97418457 AC
1 AC
97418459 ATTCATGTGT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.25, C:0.39, G:0.29, T:0.07
Consensus pattern (13 bp):
ACGCTACCAGGCG
Found at i:97418815 original size:58 final size:59
Alignment explanation
Indices: 97418725--97418845 Score: 199
Period size: 58 Copynumber: 2.1 Consensus size: 59
97418715 GGGAGGGACA
* *
97418725 GGGACGATTCATTCATTGTTGGGTACCGAACATGCAACGGTATCTGAATTCTAGC-TTT
1 GGGACGATTCATTCATTATTGGGTACCGAACATGCAACGGTATCTGAATTCTACCTTTT
* *
97418783 GGGACGGTTCATTCATTATTGGGTACCGAACATGTAACGGTATCTGAATTCTACCTTTT
1 GGGACGATTCATTCATTATTGGGTACCGAACATGCAACGGTATCTGAATTCTACCTTTT
97418842 GGGA
1 GGGA
97418846 TTGGGGAGGG
Statistics
Matches: 58, Mismatches: 4, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
58 51 0.88
59 7 0.12
ACGTcount: A:0.24, C:0.18, G:0.25, T:0.33
Consensus pattern (59 bp):
GGGACGATTCATTCATTATTGGGTACCGAACATGCAACGGTATCTGAATTCTACCTTTT
Found at i:97420524 original size:43 final size:43
Alignment explanation
Indices: 97420435--97420747 Score: 418
Period size: 43 Copynumber: 7.3 Consensus size: 43
97420425 GGCAGTGTCT
* * * *
97420435 GAGGCTCTCGCACGACCAAGGGCCTAGG-TGCCGATGGTTCTC
1 GAGGCTCCCGCACTACCAAGGGCCTAGGTTGCCGATGGTGCCC
**
97420477 GAGGCTCCCGCACTACCAAGGGCCTAGGTTGCCGATGGTGTTC
1 GAGGCTCCCGCACTACCAAGGGCCTAGGTTGCCGATGGTGCCC
97420520 GAGGCTCCCGCACTACCAAGGGCCTAGGTTGCCGATGGTGCCC
1 GAGGCTCCCGCACTACCAAGGGCCTAGGTTGCCGATGGTGCCC
*
97420563 GAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCC
1 GAGGCTCCCGCACTACCAAGGGCCTAGGTTGCCGATGGTGCCC
* * *
97420606 GAAGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGGCC
1 GAGGCTCCCGCACTACCAAGGGCCTAGGTTGCCGATGGTGCCC
* *
97420649 GAGGCTCCCGTA-TGACCAAGGGCCTAGGTTGCCGATGGTGTCC
1 GAGGCTCCCGCACT-ACCAAGGGCCTAGGTTGCCGATGGTGCCC
* * * *
97420692 GAGGCTCCTGCA-TATCCAAGGCACCAAGG-TGCCGATGGTGCTC
1 GAGGCTCCCGCACTA-CCAAGG-GCCTAGGTTGCCGATGGTGCCC
*
97420735 GAGGCTCTCGCAC
1 GAGGCTCCCGCAC
97420748 CACTGACGTC
Statistics
Matches: 245, Mismatches: 21, Indels: 8
0.89 0.08 0.03
Matches are distributed among these distances:
42 27 0.11
43 213 0.87
44 5 0.02
ACGTcount: A:0.17, C:0.32, G:0.33, T:0.18
Consensus pattern (43 bp):
GAGGCTCCCGCACTACCAAGGGCCTAGGTTGCCGATGGTGCCC
Found at i:97426106 original size:14 final size:15
Alignment explanation
Indices: 97426080--97426108 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
97426070 AAAACAAACA
97426080 CGCTGCGTACCAGGC
1 CGCTGCGTACCAGGC
97426095 CGCTGC-TACCAGGC
1 CGCTGCGTACCAGGC
97426109 GACACTACAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 8 0.57
15 6 0.43
ACGTcount: A:0.14, C:0.41, G:0.31, T:0.14
Consensus pattern (15 bp):
CGCTGCGTACCAGGC
Found at i:97431522 original size:43 final size:43
Alignment explanation
Indices: 97431439--97431531 Score: 114
Period size: 43 Copynumber: 2.2 Consensus size: 43
97431429 TTTTCTTTAG
* * * * * *
97431439 CCCGCACATCCGAGGCACCAGGGTGCCCCTGCTGCTCGAGGCT
1 CCCGCACATCCGAGGCACCAAGGTACCCATGATACCCGAGGCT
* *
97431482 CCCGCACATCCGAGGCACCAAGGTATCGATGATACCCGAGGCT
1 CCCGCACATCCGAGGCACCAAGGTACCCATGATACCCGAGGCT
97431525 CCCGCAC
1 CCCGCAC
97431532 GACCAAGGGC
Statistics
Matches: 42, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
43 42 1.00
ACGTcount: A:0.19, C:0.41, G:0.27, T:0.13
Consensus pattern (43 bp):
CCCGCACATCCGAGGCACCAAGGTACCCATGATACCCGAGGCT
Found at i:97431555 original size:43 final size:43
Alignment explanation
Indices: 97431516--97432632 Score: 1253
Period size: 43 Copynumber: 26.3 Consensus size: 43
97431506 ATCGATGATA
*
97431516 CCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTACCGATGGTG
1 CCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTG
* * *
97431559 CCCGAGGCTCCGGCACGACCAAGGGCCTAGGTTTCCAATGGTG
1 CCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTG
* ** *
97431602 TCCGAGGCTCCCGCAC-ATCCAAGTACCAAGG-TGCCGATGGTG
1 CCCGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGCCGATGGTG
* * * * *
97431644 CTCGAGGCTCCCACACGACCAGGGGCCTAGGTTGCCAATGTTG
1 CCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTG
* * * ** * *
97431687 TCCGAGGCTCTCGCAC-ATCTAAGCACCAAGG-TGCCGATGGGG
1 CCCGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGCCGATGGTG
* * *
97431729 CCCGAGGCTCTCGCACGACCAGGGGCCTAGGTTACCGATGGTG
1 CCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTG
* * ** *
97431772 TCCGAGGCTCTCGCAC-ATCCAAGCACCAAGG-TGCCGATGGTG
1 CCCGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGCCGATGGTG
*
97431814 CCCGAGTCTCCCGCACGACCAAGGGCCTAGG-TGCCGATGGT-
1 CCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTG
* * * *
97431855 CCCGAGGCTCCCGCACAACCAGGGGCTTAGGTTACCGATGGTG
1 CCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTG
** * * *
97431898 TTCGAGGCTCCCGCACGACCAGGGGCCTAGGGTACCGATGGTG
1 CCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTG
* *
97431941 TCCGAGGCTCCCGCACGACCAAGGGCCTAGG-TGCCAATGGTG
1 CCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTG
* * * *
97431983 CCCGAGGCTTCCGTACGACCAAGGGCATAGGTTGTCGATGGTG
1 CCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTG
* * *
97432026 -CCGAGGCTCTCGCACGAGCAAGGGCCTAGGTTACCGATGGTG
1 CCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTG
*
97432068 CCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCTGATGGTG
1 CCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTG
* * *
97432111 CCCGAGGCTCCGGCACGACCAAGGGCCTAGGTTTCCAATGGTG
1 CCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTG
* ** *
97432154 TCCGAGGCTCCCGCAC-ATCCAAGTACCAAGG-TGCCGATGGTG
1 CCCGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGCCGATGGTG
* * * * *
97432196 CTCGAGGCTCCCACACGACCAGGGGCCTAGGTTGCCAATGTTG
1 CCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTG
* * * ** * *
97432239 TCCGAGGCTCTCGCAC-ATCTAAGCACCAAGG-TGCCGATGGGG
1 CCCGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGCCGATGGTG
* * *
97432281 CCCGAGGCTCTCGCACGACCAGGGGCCTAGGTTACCGATGGTG
1 CCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTG
* * ** *
97432324 TCCGAGGCTCTCGCAC-ATCCAAGCACCAAGG-TGCCGATGGTG
1 CCCGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGCCGATGGTG
* *
97432366 CCCGAGTCTCCCGCACGACCAAGGGCCTAGG-TGCCAATGGTG
1 CCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTG
* * * *
97432408 CCCGAGGCTTCCGTACGACCAAGGGCATAGGTTGTCGATGGTG
1 CCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTG
* * *
97432451 -CCGAGGCTCTCGCACGAGCAAGGGCCTAGGTTACCGATGGTG
1 CCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTG
*
97432493 CCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCTGATGGTG
1 CCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTG
* *
97432536 CCCGAGGCTCCCGCATGACCAAGGGCCTAGGTTGTCGATGGTG
1 CCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTG
*
97432579 CCCGAGGCTCCCGCACGACCAATGGCCTAGGTTGCCGATGGTG
1 CCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTG
*
97432622 TCCGAGGCTCC
1 CCCGAGGCTCC
97432633 TGCATATCCA
Statistics
Matches: 893, Mismatches: 159, Indels: 44
0.81 0.15 0.04
Matches are distributed among these distances:
41 27 0.03
42 358 0.40
43 508 0.57
ACGTcount: A:0.19, C:0.32, G:0.33, T:0.17
Consensus pattern (43 bp):
CCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTG
Found at i:97431661 original size:85 final size:86
Alignment explanation
Indices: 97431516--97432632 Score: 1253
Period size: 85 Copynumber: 13.1 Consensus size: 86
97431506 ATCGATGATA
* *
97431516 CCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTACCGATGGTGCCCGAGGCTCCGGCACGACCAA
1 CCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAA
* *
97431581 GGGCCTAGGTTTCCAATGGTG
66 GGGCCTAGGTTGCCGATGGTG
* ** * * *
97431602 TCCGAGGCTCCCGCAC-ATCCAAGTACCAAGG-TGCCGATGGTGCTCGAGGCTCCCACACGACCA
1 CCCGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCA
* * *
97431665 GGGGCCTAGGTTGCCAATGTTG
65 AGGGCCTAGGTTGCCGATGGTG
* * * ** * * *
97431687 TCCGAGGCTCTCGCAC-ATCTAAGCACCAAGG-TGCCGATGGGGCCCGAGGCTCTCGCACGACCA
1 CCCGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCA
* *
97431750 GGGGCCTAGGTTACCGATGGTG
65 AGGGCCTAGGTTGCCGATGGTG
* * ** * *
97431772 TCCGAGGCTCTCGCAC-ATCCAAGCACCAAGG-TGCCGATGGTGCCCGAGTCTCCCGCACGACCA
1 CCCGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCA
97431835 AGGGCCTAGG-TGCCGATGGT-
65 AGGGCCTAGGTTGCCGATGGTG
* * * * ** *
97431855 CCCGAGGCTCCCGCACAACCAGGGGCTTAGGTTACCGATGGTGTTCGAGGCTCCCGCACGACCAG
1 CCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAA
* *
97431920 GGGCCTAGGGTACCGATGGTG
66 GGGCCTAGGTTGCCGATGGTG
* * * *
97431941 TCCGAGGCTCCCGCACGACCAAGGGCCTAGG-TGCCAATGGTGCCCGAGGCTTCCGTACGACCAA
1 CCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAA
* *
97432005 GGGCATAGGTTGTCGATGGTG
66 GGGCCTAGGTTGCCGATGGTG
* * *
97432026 -CCGAGGCTCTCGCACGAGCAAGGGCCTAGGTTACCGATGGTGCCCGAGGCTCCCGCACGACCAA
1 CCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAA
*
97432090 GGGCCTAGGTTGCTGATGGTG
66 GGGCCTAGGTTGCCGATGGTG
* * * *
97432111 CCCGAGGCTCCGGCACGACCAAGGGCCTAGGTTTCCAATGGTGTCCGAGGCTCCCGCAC-ATCCA
1 CCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCA
** *
97432175 AGTACCAAGG-TGCCGATGGTG
65 AGGGCCTAGGTTGCCGATGGTG
* * * * * * * *
97432196 CTCGAGGCTCCCACACGACCAGGGGCCTAGGTTGCCAATGTTGTCCGAGGCTCTCGCAC-ATCTA
1 CCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCA
** * *
97432260 AGCACCAAGG-TGCCGATGGGG
65 AGGGCCTAGGTTGCCGATGGTG
* * * * *
97432281 CCCGAGGCTCTCGCACGACCAGGGGCCTAGGTTACCGATGGTGTCCGAGGCTCTCGCAC-ATCCA
1 CCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCA
** *
97432345 AGCACCAAGG-TGCCGATGGTG
65 AGGGCCTAGGTTGCCGATGGTG
* * * *
97432366 CCCGAGTCTCCCGCACGACCAAGGGCCTAGG-TGCCAATGGTGCCCGAGGCTTCCGTACGACCAA
1 CCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAA
* *
97432430 GGGCATAGGTTGTCGATGGTG
66 GGGCCTAGGTTGCCGATGGTG
* * *
97432451 -CCGAGGCTCTCGCACGAGCAAGGGCCTAGGTTACCGATGGTGCCCGAGGCTCCCGCACGACCAA
1 CCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAA
*
97432515 GGGCCTAGGTTGCTGATGGTG
66 GGGCCTAGGTTGCCGATGGTG
* *
97432536 CCCGAGGCTCCCGCATGACCAAGGGCCTAGGTTGTCGATGGTGCCCGAGGCTCCCGCACGACCAA
1 CCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAA
*
97432601 TGGCCTAGGTTGCCGATGGTG
66 GGGCCTAGGTTGCCGATGGTG
*
97432622 TCCGAGGCTCC
1 CCCGAGGCTCC
97432633 TGCATATCCA
Statistics
Matches: 895, Mismatches: 124, Indels: 24
0.86 0.12 0.02
Matches are distributed among these distances:
83 22 0.02
84 132 0.15
85 539 0.60
86 202 0.23
ACGTcount: A:0.19, C:0.32, G:0.33, T:0.17
Consensus pattern (86 bp):
CCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAA
GGGCCTAGGTTGCCGATGGTG
Found at i:97432518 original size:552 final size:554
Alignment explanation
Indices: 97431516--97432632 Score: 1961
Period size: 552 Copynumber: 2.0 Consensus size: 554
97431506 ATCGATGATA
97431516 CCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTACCGATGGTGCCCGAGGCTCCGGCACGACCAA
1 CCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTACCGATGGTGCCCGAGGCTCCGGCACGACCAA
97431581 GGGCCTAGGTTTCCAATGGTGTCCGAGGCTCCCGCACATCCAAGTACCAAGGTGCCGATGGTGCT
66 GGGCCTAGGTTTCCAATGGTGTCCGAGGCTCCCGCACATCCAAGTACCAAGGTGCCGATGGTGCT
97431646 CGAGGCTCCCACACGACCAGGGGCCTAGGTTGCCAATGTTGTCCGAGGCTCTCGCACATCTAAGC
131 CGAGGCTCCCACACGACCAGGGGCCTAGGTTGCCAATGTTGTCCGAGGCTCTCGCACATCTAAGC
97431711 ACCAAGGTGCCGATGGGGCCCGAGGCTCTCGCACGACCAGGGGCCTAGGTTACCGATGGTGTCCG
196 ACCAAGGTGCCGATGGGGCCCGAGGCTCTCGCACGACCAGGGGCCTAGGTTACCGATGGTGTCCG
97431776 AGGCTCTCGCACATCCAAGCACCAAGGTGCCGATGGTGCCCGAGTCTCCCGCACGACCAAGGGCC
261 AGGCTCTCGCACATCCAAGCACCAAGGTGCCGATGGTGCCCGAGTCTCCCGCACGACCAAGGGCC
* * * *
97431841 TAGGTGCCGATGGTCCCGAGGCTCCCGCACAACCAGGGGCTTAGGTTACCGATGGTGTTCGAGGC
326 TAGGTGCCAATGGTCCCGAGGCTCCCGCACAACCAAGGGCATAGGTTACCGATGGTGTCCGAGGC
* *
97431906 TCCCGCACGACCAGGGGCCTAGGGTACCGATGGTGTCCGAGGCTCCCGCACGACCAAGGGCCTAG
391 TCCCGCACGACCAAGGGCCTAGGGTACCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAG
* *
97431971 G-TGCCAATGGTGCCCGAGGCTTCCGTACGACCAAGGGCATAGGTTGTCGATGGTG-CCGAGGCT
456 GTTGCCAATGGTGCCCGAGGCTCCCGCACGACCAAGGGCATAGGTTGTCGATGGTGCCCGAGGCT
* *
97432034 CTCGCACGAGCAAGGGCCTAGGTTACCGATGGTG
521 CCCGCACGACCAAGGGCCTAGGTTACCGATGGTG
* *
97432068 CCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCTGATGGTGCCCGAGGCTCCGGCACGACCAA
1 CCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTACCGATGGTGCCCGAGGCTCCGGCACGACCAA
97432133 GGGCCTAGGTTTCCAATGGTGTCCGAGGCTCCCGCACATCCAAGTACCAAGGTGCCGATGGTGCT
66 GGGCCTAGGTTTCCAATGGTGTCCGAGGCTCCCGCACATCCAAGTACCAAGGTGCCGATGGTGCT
97432198 CGAGGCTCCCACACGACCAGGGGCCTAGGTTGCCAATGTTGTCCGAGGCTCTCGCACATCTAAGC
131 CGAGGCTCCCACACGACCAGGGGCCTAGGTTGCCAATGTTGTCCGAGGCTCTCGCACATCTAAGC
97432263 ACCAAGGTGCCGATGGGGCCCGAGGCTCTCGCACGACCAGGGGCCTAGGTTACCGATGGTGTCCG
196 ACCAAGGTGCCGATGGGGCCCGAGGCTCTCGCACGACCAGGGGCCTAGGTTACCGATGGTGTCCG
97432328 AGGCTCTCGCACATCCAAGCACCAAGGTGCCGATGGTGCCCGAGTCTCCCGCACGACCAAGGGCC
261 AGGCTCTCGCACATCCAAGCACCAAGGTGCCGATGGTGCCCGAGTCTCCCGCACGACCAAGGGCC
* * * **
97432393 TAGGTGCCAATGGTGCCCGAGGCTTCCGTACGACCAAGGGCATAGGTTGTCGATGGTG-CCGAGG
326 TAGGTGCCAATGGT-CCCGAGGCTCCCGCACAACCAAGGGCATAGGTTACCGATGGTGTCCGAGG
* * *
97432457 CTCTCGCACGAGCAAGGGCCTAGGTTACCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTA
390 CTCCCGCACGACCAAGGGCCTAGGGTACCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTA
** * *
97432522 GGTTGCTGATGGTGCCCGAGGCTCCCGCATGACCAAGGGCCTAGGTTGTCGATGGTGCCCGAGGC
455 GGTTGCCAATGGTGCCCGAGGCTCCCGCACGACCAAGGGCATAGGTTGTCGATGGTGCCCGAGGC
* *
97432587 TCCCGCACGACCAATGGCCTAGGTTGCCGATGGTG
520 TCCCGCACGACCAAGGGCCTAGGTTACCGATGGTG
*
97432622 TCCGAGGCTCC
1 CCCGAGGCTCC
97432633 TGCATATCCA
Statistics
Matches: 535, Mismatches: 27, Indels: 4
0.95 0.05 0.01
Matches are distributed among these distances:
552 403 0.75
553 84 0.16
554 48 0.09
ACGTcount: A:0.19, C:0.32, G:0.33, T:0.17
Consensus pattern (554 bp):
CCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTACCGATGGTGCCCGAGGCTCCGGCACGACCAA
GGGCCTAGGTTTCCAATGGTGTCCGAGGCTCCCGCACATCCAAGTACCAAGGTGCCGATGGTGCT
CGAGGCTCCCACACGACCAGGGGCCTAGGTTGCCAATGTTGTCCGAGGCTCTCGCACATCTAAGC
ACCAAGGTGCCGATGGGGCCCGAGGCTCTCGCACGACCAGGGGCCTAGGTTACCGATGGTGTCCG
AGGCTCTCGCACATCCAAGCACCAAGGTGCCGATGGTGCCCGAGTCTCCCGCACGACCAAGGGCC
TAGGTGCCAATGGTCCCGAGGCTCCCGCACAACCAAGGGCATAGGTTACCGATGGTGTCCGAGGC
TCCCGCACGACCAAGGGCCTAGGGTACCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAG
GTTGCCAATGGTGCCCGAGGCTCCCGCACGACCAAGGGCATAGGTTGTCGATGGTGCCCGAGGCT
CCCGCACGACCAAGGGCCTAGGTTACCGATGGTG
Found at i:97432694 original size:129 final size:128
Alignment explanation
Indices: 97431475--97432698 Score: 790
Period size: 127 Copynumber: 9.6 Consensus size: 128
97431465 CCCTGCTGCT
* * *
97431475 CGAGGCTCCCGCAC-ATCCGAGGCACCAAGGTAT--CGATGA-TACCCGAGGCTCCCGCACGACC
1 CGAGGCTCCCGCACGA-CCAAGG-ACCAAGGT-TGCCGAT-ACTGCCCGAGGCTCCCGCACCACC
* ** * * *
97431536 AAGGGCCTAGGTTACCGATGGTGCCCGAGGCTCCGGCACGACCAAGGGCCTAGGTTTCCAATGGT
62 AACGGCCTAGGTTGTCGATGGTG-CCGAGGCTCCCGCACGACCAAGGGCCTAGGTTACCGATGGT
*
97431601 GTC
126 GCC
* ** * * * **
97431604 CGAGGCTCCCGCAC-ATCCAAGTACCAAGG-TGCCGATGGTGCTCGAGGCTCCCACACGACCAGG
1 CGAGGCTCCCGCACGA-CCAAGGACCAAGGTTGCCGATACTGCCCGAGGCTCCCGCACCACCAAC
* * * * * ** * * *
97431667 GGCCTAGGTTGCCAATGTTGTCCGAGGCTCTCGCAC-ATCTAAGCACCAAGG-TGCCGATGGGGC
65 GGCCTAGGTTGTCGATGGTG-CCGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTACCGATGGTGC
97431730 C
128 C
* * * * * ** * *
97431731 CGAGGCTCTCGCACGACCAGGGGCCTAGGTTACCGATGGTGTCCGAGGCTCTCGCA-CATCCAA-
1 CGAGGCTCCCGCACGACCAAGGACCAAGGTTGCCGATACTGCCCGAGGCTCCCGCACCA-CCAAC
* * * * *
97431794 GCACCAAGG-TGCCGATGGTGCCCGAGTCTCCCGCACGACCAAGGGCCTAGG-TGCCGATGGT-C
65 G-GCCTAGGTTGTCGATGGTG-CCGAGGCTCCCGCACGACCAAGGGCCTAGGTTACCGATGGTGC
97431856 C
128 C
* * * ** * ** ** * **
97431857 CGAGGCTCCCGCACAACCAGGGGCTTAGGTTACCGATGGTGTTCGAGGCTCCCGCACGACCAGGG
1 CGAGGCTCCCGCACGACCAAGGACCAAGGTTGCCGATACTGCCCGAGGCTCCCGCACCACCAACG
* ** * *
97431922 GCCTAGGGTACCGATGGTGTCCGAGGCTCCCGCACGACCAAGGGCCTAGG-TGCCAATGGTGCC
66 GCCTAGGTTGTCGATGGTG-CCGAGGCTCCCGCACGACCAAGGGCCTAGGTTACCGATGGTGCC
* * * * ** * * * *
97431985 CGAGGCTTCCGTACGACCAAGG-GCATAGGTTGTCGATGGTG-CCGAGGCTCTCGCACGAGCAAG
1 CGAGGCTCCCGCACGACCAAGGACCA-AGGTTGCCGATACTGCCCGAGGCTCCCGCACCACCAAC
** * *
97432048 GGCCTAGGTTACCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCTGATGGTGCC
65 GGCCTAGGTTGTCGATGGTG-CCGAGGCTCCCGCACGACCAAGGGCCTAGGTTACCGATGGTGCC
* * * * * ** *
97432113 CGAGGCTCCGGCACGACCAAGGGCCTAGGTTTCCAATGGTGTCCGAGGCTCCCGCA-CATCCAA-
1 CGAGGCTCCCGCACGACCAAGGACCAAGGTTGCCGATACTGCCCGAGGCTCCCGCACCA-CCAAC
* * * * * * * * *
97432176 GTACCAAGG-TGCCGATGGTGCTCGAGGCTCCCACACGACCAGGGGCCTAGGTTGCCAATGTTGT
65 G-GCCTAGGTTGTCGATGGTGC-CGAGGCTCCCGCACGACCAAGGGCCTAGGTTACCGATGGTGC
97432240 C
128 C
* * * *** * * **
97432241 CGAGGCTCTCGCAC-ATCTAAGCACCAAGG-TGCCGATGGGGCCCGAGGCTCTCGCACGACCAGG
1 CGAGGCTCCCGCACGA-CCAAGGACCAAGGTTGCCGATACTGCCCGAGGCTCCCGCACCACCAAC
** * ** * *
97432304 GGCCTAGGTTACCGATGGTGTCCGAGGCTCTCGCAC-ATCCAAGCACCAAGG-TGCCGATGGTGC
65 GGCCTAGGTTGTCGATGGTG-CCGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTACCGATGGTGC
97432367 C
128 C
* * * * ** * * * *
97432368 CGAGTCTCCCGCACGACCAAGGGCCTAGG-TGCCAATGGTGCCCGAGGCTTCCGTACGACCAAGG
1 CGAGGCTCCCGCACGACCAAGGACCAAGGTTGCCGATACTGCCCGAGGCTCCCGCACCACCAACG
* * *
97432432 GCATAGGTTGTCGATGGTGCCGAGGCTCTCGCACGAGCAAGGGCCTAGGTTACCGATGGTGCC
66 GCCTAGGTTGTCGATGGTGCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTACCGATGGTGCC
* * * ** ** *
97432495 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCTGATGGTGCCCGAGGCTCCCGCATGACCAAGG
1 CGAGGCTCCCGCACGACCAAGGACCAAGGTTGCCGATACTGCCCGAGGCTCCCGCACCACCAACG
* * *
97432560 GCCTAGGTTGTCGATGGTGCCCGAGGCTCCCGCACGACCAATGGCCTAGGTTGCCGATGGTGTC
66 GCCTAGGTTGTCGATGGTG-CCGAGGCTCCCGCACGACCAAGGGCCTAGGTTACCGATGGTGCC
* * * * ** **
97432624 CGAGGCTCCTGCA-TATCCAAGGCACCAATG-TGCCGATACTGCTCGAGGCTCTTGCACCACTGA
1 CGAGGCTCCCGCACGA-CCAAGG-ACCAAGGTTGCCGATACTGCCCGAGGCTCCCGCACCACCAA
*
97432687 CGTCCTAGGTTG
64 CGGCCTAGGTTG
97432699 CCTAGTTGTG
Statistics
Matches: 893, Mismatches: 169, Indels: 66
0.79 0.15 0.06
Matches are distributed among these distances:
126 86 0.10
127 340 0.38
128 330 0.37
129 133 0.15
130 4 0.00
ACGTcount: A:0.19, C:0.32, G:0.32, T:0.17
Consensus pattern (128 bp):
CGAGGCTCCCGCACGACCAAGGACCAAGGTTGCCGATACTGCCCGAGGCTCCCGCACCACCAACG
GCCTAGGTTGTCGATGGTGCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTACCGATGGTGCC
Found at i:97432977 original size:24 final size:24
Alignment explanation
Indices: 97432922--97432977 Score: 60
Period size: 24 Copynumber: 2.3 Consensus size: 24
97432912 ATGGCTCACT
*
97432922 GGAGCACCACCGAGAAAGCTCGTC
1 GGAGCACCACCGAGAAAGATCGTC
* * *
97432946 AGACCACCACCG-GAATGGATCGTC
1 GGAGCACCACCGAGAA-AGATCGTC
97432970 GGAGCACC
1 GGAGCACC
97432978 GTCGGGAACC
Statistics
Matches: 25, Mismatches: 6, Indels: 2
0.76 0.18 0.06
Matches are distributed among these distances:
23 3 0.12
24 22 0.88
ACGTcount: A:0.29, C:0.34, G:0.29, T:0.09
Consensus pattern (24 bp):
GGAGCACCACCGAGAAAGATCGTC
Found at i:97433459 original size:58 final size:59
Alignment explanation
Indices: 97433386--97433506 Score: 181
Period size: 58 Copynumber: 2.1 Consensus size: 59
97433376 GGGAGGGACA
* *
97433386 GGGACGATTCATTCATTGTTGGGTACCGAACATGCAACGGCATCTGAATTCTAGC-TTT
1 GGGACGATTCATTCATTATTGGGTACCGAACATGCAACGGCATCTGAATTCTACCTTTT
* * * *
97433444 GGGACGGTTTATTCATTATTGGGTACCGAACATGTAACGGTATCTGAATTCTACCTTTT
1 GGGACGATTCATTCATTATTGGGTACCGAACATGCAACGGCATCTGAATTCTACCTTTT
97433503 GGGA
1 GGGA
97433507 TTGGAGAGGG
Statistics
Matches: 56, Mismatches: 6, Indels: 1
0.89 0.10 0.02
Matches are distributed among these distances:
58 49 0.88
59 7 0.12
ACGTcount: A:0.24, C:0.18, G:0.25, T:0.33
Consensus pattern (59 bp):
GGGACGATTCATTCATTATTGGGTACCGAACATGCAACGGCATCTGAATTCTACCTTTT
Found at i:97437825 original size:50 final size:48
Alignment explanation
Indices: 97437727--97438020 Score: 471
Period size: 48 Copynumber: 6.0 Consensus size: 48
97437717 CAAGATAAAT
* * * *
97437727 ATATATATGTGTGGTAAAGCTGAATGGTTAGTGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
* *
97437775 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTG-AA-ATATGTATGAG
97437825 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
* *
97437873 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTG-AA-ATATGTATGAG
97437923 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
*
97437971 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTAGGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
97438019 AT
1 AT
97438021 GTGTGTATAT
Statistics
Matches: 229, Mismatches: 13, Indels: 8
0.92 0.05 0.03
Matches are distributed among these distances:
48 133 0.58
49 8 0.03
50 88 0.38
ACGTcount: A:0.35, C:0.05, G:0.28, T:0.32
Consensus pattern (48 bp):
ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
Found at i:97438030 original size:98 final size:98
Alignment explanation
Indices: 97437727--97438011 Score: 525
Period size: 98 Copynumber: 2.9 Consensus size: 98
97437717 CAAGATAAAT
* * * *
97437727 ATATATATGTGTGGTAAAGCTGAATGGTTAGTGTGAAATATGTATGAGATATGTATATGTGGTAA
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATATGTGGTAA
97437792 AGCCGAATGGCTAATGTGAAATATATATATGAG
66 AGCCGAATGGCTAATGTGAAATATATATATGAG
97437825 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATATGTGGTAA
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATATGTGGTAA
97437890 AGCCGAATGGCTAATGTGAAATATATATATGAG
66 AGCCGAATGGCTAATGTGAAATATATATATGAG
97437923 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATATGTGGTAA
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATATGTGGTAA
*
97437988 AGCCGAATGGCTAGTGTGAAATAT
66 AGCCGAATGGCTAATGTGAAATAT
97438012 GTAGGAGATG
Statistics
Matches: 182, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
98 182 1.00
ACGTcount: A:0.35, C:0.06, G:0.27, T:0.32
Consensus pattern (98 bp):
ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATATGTGGTAA
AGCCGAATGGCTAATGTGAAATATATATATGAG
Found at i:97438211 original size:37 final size:37
Alignment explanation
Indices: 97438161--97438261 Score: 166
Period size: 37 Copynumber: 2.7 Consensus size: 37
97438151 GGAAATATAT
97438161 TCCGGGTAAGACCCGATGACTACGTGTAGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTAGAGATTATG
* * *
97438198 TCCGGGTAAGACCCGATGACTACGTATAGAGGTTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTAGAGATTATG
*
97438235 TCCGGGTAAGACCCGATAACTACGTGT
1 TCCGGGTAAGACCCGATGACTACGTGT
97438262 GGGGACTATT
Statistics
Matches: 59, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
37 59 1.00
ACGTcount: A:0.26, C:0.21, G:0.29, T:0.25
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTAGAGATTATG
Found at i:97448999 original size:21 final size:21
Alignment explanation
Indices: 97448975--97449017 Score: 86
Period size: 21 Copynumber: 2.0 Consensus size: 21
97448965 GTGAGAGAAA
97448975 GAATAGGACTGTACTGAACAT
1 GAATAGGACTGTACTGAACAT
97448996 GAATAGGACTGTACTGAACAT
1 GAATAGGACTGTACTGAACAT
97449017 G
1 G
97449018 GCCAGGTGCC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.37, C:0.14, G:0.26, T:0.23
Consensus pattern (21 bp):
GAATAGGACTGTACTGAACAT
Found at i:97453572 original size:21 final size:21
Alignment explanation
Indices: 97453548--97453590 Score: 86
Period size: 21 Copynumber: 2.0 Consensus size: 21
97453538 GTGAGAGAAA
97453548 GAATAGGACTGTACTGAACAT
1 GAATAGGACTGTACTGAACAT
97453569 GAATAGGACTGTACTGAACAT
1 GAATAGGACTGTACTGAACAT
97453590 G
1 G
97453591 GCCAGGTGCC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.37, C:0.14, G:0.26, T:0.23
Consensus pattern (21 bp):
GAATAGGACTGTACTGAACAT
Found at i:97458588 original size:13 final size:13
Alignment explanation
Indices: 97458567--97458601 Score: 52
Period size: 13 Copynumber: 2.7 Consensus size: 13
97458557 AGGCAACATT
97458567 CGCTACCAGGCGA
1 CGCTACCAGGCGA
*
97458580 CGCTCCCAGGCGA
1 CGCTACCAGGCGA
*
97458593 CACTACCAG
1 CGCTACCAG
97458602 TCAACATTCA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.23, C:0.43, G:0.26, T:0.09
Consensus pattern (13 bp):
CGCTACCAGGCGA
Found at i:97465576 original size:85 final size:86
Alignment explanation
Indices: 97465458--97465635 Score: 225
Period size: 85 Copynumber: 2.1 Consensus size: 86
97465448 TTTTCTTTAG
* ** * * *
97465458 CCCGCACATCCGAGGCACCAGGGTGCCCCTGCTGCTCGAGGCACCTGCACATCCAACG-TCCTAG
1 CCCGCACATCCGAGGCACCAAGGTGCCAATGCTGCTCGAGGCACCCGCACATCCAACGCACCAAG
* *
97465522 GTTGCCTATGGTGTCCGAGGCT
66 G-TGCCAATGGTGCCCGAGGCT
* * *
97465544 CCCGCACATCCGA-GCACCAAGGTGCCAATGCTGCTCGAGGCTCCCGCACATCTAAGGCACCAAG
1 CCCGCACATCCGAGGCACCAAGGTGCCAATGCTGCTCGAGGCACCCGCACATCCAACGCACCAAG
*
97465608 GTGCCAATGGTGCCCTAGGCT
66 GTGCCAATGGTGCCCGAGGCT
97465629 CCCGCAC
1 CCCGCAC
97465636 GACCAAGGGC
Statistics
Matches: 79, Mismatches: 12, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
85 61 0.77
86 18 0.23
ACGTcount: A:0.19, C:0.38, G:0.26, T:0.16
Consensus pattern (86 bp):
CCCGCACATCCGAGGCACCAAGGTGCCAATGCTGCTCGAGGCACCCGCACATCCAACGCACCAAG
GTGCCAATGGTGCCCGAGGCT
Found at i:97465616 original size:43 final size:43
Alignment explanation
Indices: 97465458--97465643 Score: 173
Period size: 43 Copynumber: 4.3 Consensus size: 43
97465448 TTTTCTTTAG
* * ** *
97465458 CCCGCACATCCGAGGCACCAGGGTGCCCCTGCTGCTCGAGGCA
1 CCCGCACATCCAAGGCACCAAGGTGCCAATGCTGCTCGAGGCT
* * * * * *
97465501 CCTGCACATCCAACG-TCCTAGGTTGCCTATGGTG-TCCGAGGCT
1 CCCGCACATCCAAGGCACCAAGG-TGCCAATGCTGCT-CGAGGCT
*
97465544 CCCGCACATCCGA-GCACCAAGGTGCCAATGCTGCTCGAGGCT
1 CCCGCACATCCAAGGCACCAAGGTGCCAATGCTGCTCGAGGCT
* * * *
97465586 CCCGCACATCTAAGGCACCAAGGTGCCAATGGTGCCCTAGGCT
1 CCCGCACATCCAAGGCACCAAGGTGCCAATGCTGCTCGAGGCT
97465629 CCCGCACGA-CCAAGG
1 CCCGCAC-ATCCAAGG
97465644 GCCTAGGTTA
Statistics
Matches: 115, Mismatches: 22, Indels: 12
0.77 0.15 0.08
Matches are distributed among these distances:
42 33 0.29
43 81 0.70
44 1 0.01
ACGTcount: A:0.20, C:0.38, G:0.27, T:0.16
Consensus pattern (43 bp):
CCCGCACATCCAAGGCACCAAGGTGCCAATGCTGCTCGAGGCT
Found at i:97465661 original size:43 final size:43
Alignment explanation
Indices: 97465517--97466307 Score: 617
Period size: 43 Copynumber: 18.7 Consensus size: 43
97465507 CATCCAACGT
* * * **
97465517 CCTAGGTTGCCTATGGTGTCCGAGGCTCCCGCAC-ATCCGAGCA
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGG
* * * * * *
97465560 CCAAGG-TGCCAATGCTGCTCGAGGCTCCCGCAC-ATCTAAGGCA
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGG-G
* * *
97465603 CCAAGG-TGCCAATGGTGCCCTAGGCTCCCGCACGACCAAGGG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* *
97465645 CCTAGGTTACCGATGGTGCCCGAGGCT--CGCACGACCAGGGG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* *
97465686 CCTAGGTTGTCGATGGTGTCCGAGGCTCCCGCACGACCAAGGG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* *
97465729 CCAAGG-TGCCGATGGT-CCCGAGGCTCCCGCATGACCAAGGG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* *
97465770 CCTAAGG-TGCCGAT--T-CGC-A--CAT--C-CAAGCACCAAGGTG
1 CCT-AGGTTGCCGATGGTGCCCGAGGC-TCCCGCACG-ACCAAGG-G
* ** *
97465807 CCGATGGTACCCGA-GGCT-CCC---G---C---ACGACCAGGGG
1 CCTA-GGTTGCCGATGG-TGCCCGAGGCTCCCGCACGACCAAGGG
* * * * **
97465841 CCTAGGTTACCGGTGGTGTCTGAGGCTCCCGCAC-ATCCAAGCA
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGG
*
97465884 CCAAGG-TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* * * *
97465926 CCTAGG-TGTCGATGCT-CCCGAGGCTCTCGCACGACCAGGGG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* * *
97465967 CCTAGGTTGTCGATGGTGTCCGAGGCTCCCGCACGACCAGGGG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* * *
97466010 CCTAGGGTGCCGATGGTGTCCGAGGCTCCCGCACGACCAGGGG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
97466053 CCATGACCAAGGGCCTAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
1 CC-T-----A-GG--T---TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* * *
97466108 CATAGGTTGCCGATGGTGTCCAAGGCTCCCGCACGACCAAGGG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* * * *
97466151 CATAGGTTACCGATGGCG-CCGAGGCTCTCGCACGACCAAGGG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
97466193 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* * * *
97466236 CCTTGGTTACCGATGGTGCCTGAGGCTCCCGCACGACC-GGGG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* **
97466278 ACCTAAGTTGCCGATGGTTTCCGAGGCTCC
1 -CCTAGGTTGCCGATGGTGCCCGAGGCTCC
97466308 TGCATATCCA
Statistics
Matches: 618, Mismatches: 85, Indels: 90
0.78 0.11 0.11
Matches are distributed among these distances:
33 7 0.01
34 7 0.01
35 9 0.01
36 11 0.02
37 7 0.01
38 5 0.01
39 1 0.00
40 7 0.01
41 91 0.15
42 143 0.23
43 285 0.46
44 2 0.00
46 1 0.00
48 2 0.00
49 2 0.00
50 2 0.00
54 1 0.00
55 35 0.06
ACGTcount: A:0.18, C:0.33, G:0.33, T:0.16
Consensus pattern (43 bp):
CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
Found at i:97465928 original size:85 final size:85
Alignment explanation
Indices: 97465792--97466355 Score: 521
Period size: 85 Copynumber: 6.5 Consensus size: 85
97465782 ATTCGCACAT
* * * *
97465792 CCAAGCACCAAGGTGCCGATGGTACCCGAGGCTCCCGCACGACCAGGGGCCTAGGTTACCGGTGG
1 CCAAGCACCAAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGG
*
97465857 TGTCTGAGGCTCCCGCAC-A
66 TGTCCGAGGCTCCCGCACGA
*
97465876 TCCAAGCACCAAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGG-TGTCGATG
1 -CCAAGCACCAAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATG
* * *
97465940 CT-CCCGAGGCTCTCGCACGA
65 GTGTCCGAGGCTCCCGCACGA
* ** * * * * *
97465960 CCAGGGGCCTAGGTTGTCGATGGTGTCCGAGGCTCCCGCACGACCAGGGGCCTAGGGTGCCGATG
1 CCAAGCACCAAGG-TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATG
97466025 GTGTCCGAGGCTCCCGCACGA
65 GTGTCCGAGGCTCCCGCACGA
* *
97466046 CCAGGGGCCATGACCAAGGGCCTAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCAT
1 CCA------A-G--C-A---CCAAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCT
*
97466111 AGGTTGCCGATGGTGTCCAAGGCTCCCGCACGA
53 AGGTTGCCGATGGTGTCCGAGGCTCCCGCACGA
** * * *
97466144 CCAAG-GGCATAGGTTACCGATGGCG-CCGAGGCTCTCGCACGACCAAGGGCCTAGGTTGCCGAT
1 CCAAGCACCA-AGG-TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGAT
*
97466207 GGTGCCCGAGGCTCCCGCACGA
64 GGTGTCCGAGGCTCCCGCACGA
** ** * * * *
97466229 CCAAGGGCCTTGGTTACCGATGGTGCCTGAGGCTCCCGCACGACC-GGGGACCTAAGTTGCCGAT
1 CCAAGCACCAAGG-TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG-CCTAGGTTGCCGAT
* * *
97466293 GGTTTCCGAGGCTCCTGCA-TA
64 GGTGTCCGAGGCTCCCGCACGA
* * * *
97466314 TCCAAGGCACCAAGGTGCCAATGCTGCTCGAGGCTCTCGCAC
1 -CCAA-GCACCAAGGTGCCGATGGTGCCCGAGGCTCCCGCAC
97466356 CACTGACGTC
Statistics
Matches: 395, Mismatches: 60, Indels: 47
0.79 0.12 0.09
Matches are distributed among these distances:
83 22 0.06
84 47 0.12
85 142 0.36
86 101 0.26
87 5 0.01
91 1 0.00
92 1 0.00
93 1 0.00
98 69 0.17
99 6 0.02
ACGTcount: A:0.18, C:0.33, G:0.33, T:0.16
Consensus pattern (85 bp):
CCAAGCACCAAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGG
TGTCCGAGGCTCCCGCACGA
Found at i:97465950 original size:197 final size:197
Alignment explanation
Indices: 97465588--97465970 Score: 538
Period size: 197 Copynumber: 1.9 Consensus size: 197
97465578 TCGAGGCTCC
* * *
97465588 CGCACATCTAAGGCACCAAGGTGCCAATGGTGCCCTAGGCTCCCGCACGACCAAGGGCCTAGGTT
1 CGCACATCCAAGGCACCAAGGTGCCAATGGTACCCGAGGCTCCCGCACGACCAAGGGCCTAGGTT
* ** * * *
97465653 ACCGATGGTGCCCGAGGCTCGCACGACCAGGGGCCTAGGTTGTCGATGGTGTCCGAGGCTCCCGC
66 ACCGATGGTGCCCGAGGCTCGCACGACCAAGCACCAAGGTTGCCGATGGTGCCCGAGGCTCCCGC
* *
97465718 ACGACCAAGGGCCAAGGTGCCGATGGTCCCGAGGCTCCCGCATGACCAAGGGCCTAAGGTGCCGA
131 ACGACCAAGGGCCAAGGTGCCGATGCTCCCGAGGCTCCCGCACGACCAAGGGCCTAAGGTGCCGA
97465783 TT
196 TT
* *
97465785 CGCACATCCAA-GCACCAAGGTGCCGATGGTACCCGAGGCTCCCGCACGACCAGGGGCCTAGGTT
1 CGCACATCCAAGGCACCAAGGTGCCAATGGTACCCGAGGCTCCCGCACGACCAAGGGCCTAGGTT
* * *
97465849 ACCGGTGGTGTCTGAGGCTCCCGCAC-ATCCAAGCACCAAGG-TGCCGATGGTGCCCGAGGCTCC
66 ACCGATGGTGCCCGAGGCT--CGCACGA-CCAAGCACCAAGGTTGCCGATGGTGCCCGAGGCTCC
* * * *
97465912 CGCACGACCAAGGGCCTAGGTGTCGATGCTCCCGAGGCTCTCGCACGACCAGGGGCCTA
128 CGCACGACCAAGGGCCAAGGTGCCGATGCTCCCGAGGCTCCCGCACGACCAAGGGCCTA
97465971 GGTTGTCGAT
Statistics
Matches: 163, Mismatches: 20, Indels: 6
0.86 0.11 0.03
Matches are distributed among these distances:
196 65 0.40
197 84 0.52
198 14 0.09
ACGTcount: A:0.20, C:0.34, G:0.32, T:0.15
Consensus pattern (197 bp):
CGCACATCCAAGGCACCAAGGTGCCAATGGTACCCGAGGCTCCCGCACGACCAAGGGCCTAGGTT
ACCGATGGTGCCCGAGGCTCGCACGACCAAGCACCAAGGTTGCCGATGGTGCCCGAGGCTCCCGC
ACGACCAAGGGCCAAGGTGCCGATGCTCCCGAGGCTCCCGCACGACCAAGGGCCTAAGGTGCCGA
TT
Found at i:97466088 original size:55 final size:56
Alignment explanation
Indices: 97466001--97466108 Score: 182
Period size: 55 Copynumber: 1.9 Consensus size: 56
97465991 GCTCCCGCAC
* * *
97466001 GACCAGGGGCCTAGGGTGCCGATGGTGTCCGAGGCTCCCGCACGACCAGGGGCCAT
1 GACCAAGGGCCTAGGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCAT
97466057 GACCAAGGGCCTA-GGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGC
1 GACCAAGGGCCTAGGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGC
97466109 ATAGGTTGCC
Statistics
Matches: 49, Mismatches: 3, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
55 37 0.76
56 12 0.24
ACGTcount: A:0.18, C:0.33, G:0.38, T:0.11
Consensus pattern (56 bp):
GACCAAGGGCCTAGGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCAT
Found at i:97466128 original size:98 final size:97
Alignment explanation
Indices: 97465958--97466237 Score: 350
Period size: 98 Copynumber: 3.0 Consensus size: 97
97465948 GCTCTCGCAC
* * * *
97465958 GACCAGGGGCCTAGGTTGTCGATGGTGTCCGAGGCTCCCGCACGACCAGGGGCCTAGGGTGCCGA
1 GACCAAGGGCCTAGG-TGCCGATGGTG-CCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGA
*
97466023 TGGTGTCCGAGGCTCCCGCACGACCAGGGGCCAT
64 TGGTGTCCGAGGCTCCCGCACGACCAAGGGCCAT
*
97466057 GACCAAGGGCCTAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCATAGGTTGCCGAT
1 GACCAAGGGCCTAGGTGCCGATGGTG-CCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGAT
*
97466122 GGTGTCCAAGGCTCCCGCACGACCAAGGG-CAT
65 GGTGTCCGAGGCTCCCGCACGACCAAGGGCCAT
* * *
97466154 -----A-GG--T---TACCGATGGCGCCGAGGCTCTCGCACGACCAAGGGCCTAGGTTGCCGATG
1 GACCAAGGGCCTAGGTGCCGATGGTGCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATG
*
97466208 GTGCCCGAGGCTCCCGCACGACCAAGGGCC
66 GTGTCCGAGGCTCCCGCACGACCAAGGGCC
97466238 TTGGTTACCG
Statistics
Matches: 166, Mismatches: 14, Indels: 15
0.85 0.07 0.08
Matches are distributed among these distances:
85 63 0.38
86 10 0.06
89 1 0.01
91 2 0.01
92 1 0.01
97 3 0.02
98 72 0.43
99 14 0.08
ACGTcount: A:0.18, C:0.33, G:0.36, T:0.14
Consensus pattern (97 bp):
GACCAAGGGCCTAGGTGCCGATGGTGCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATG
GTGTCCGAGGCTCCCGCACGACCAAGGGCCAT
Found at i:97466231 original size:226 final size:224
Alignment explanation
Indices: 97465832--97466277 Score: 616
Period size: 226 Copynumber: 2.0 Consensus size: 224
97465822 GCTCCCGCAC
* * * *
97465832 GACCAGGGGCCTAGGTTACCGGTGGTGTCTGAGGCTCCCGCACATCCAAGCACCAAGGTGCCGAT
1 GACCAAGGGCCTAGGTTACCGATGGTGCCCGAGGCTCCCGCACATCCAAGCACCAAGGTGCCGAT
* *
97465897 GGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTGTCGATGCTCCCGAGGCTCTCGCACGACC
66 GGTGCCCAAGGCTCCCGCACGACCAAGGGCATAGGTGTCGATGCTCCCGAGGCTCTCGCACGACC
* * * * *
97465962 AGGGGCCTAGGTTGTCGATGGTGTCCGAGGCTCCCGCACGACCAGGGGCCTAGGGTGCCGATGGT
131 AAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGGTACCGATGGT
97466027 GTCC-GAGGCTCCCGCACGACCAGGGGCCAT
196 G-CCTGAGGCTCCCGCACGACC-GGGGCCAT
* **
97466057 GACCAAGGGCCTAGG-TGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAG-GGCATAGGTTGCC
1 GACCAAGGGCCTAGGTTACCGATGGTGCCCGAGGCTCCCGCAC-ATCCAAGCACCA-AGG-TGCC
* *
97466119 GATGGTGTCCAAGGCTCCCGCACGACCAAGGGCATAGGT-TACCGATGGC-GCCGAGGCTCTCGC
63 GATGGTGCCCAAGGCTCCCGCACGACCAAGGGCATAGGTGT--CGAT-GCTCCCGAGGCTCTCGC
* *
97466182 ACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTTGGTTACC
125 ACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGGTACC
97466247 GATGGTGCCTGAGGCTCCCGCACGACCGGGG
190 GATGGTGCCTGAGGCTCCCGCACGACCGGGG
97466278 ACCTAAGTTG
Statistics
Matches: 196, Mismatches: 18, Indels: 14
0.86 0.08 0.06
Matches are distributed among these distances:
223 2 0.01
224 32 0.16
225 61 0.31
226 99 0.51
227 2 0.01
ACGTcount: A:0.17, C:0.33, G:0.35, T:0.15
Consensus pattern (224 bp):
GACCAAGGGCCTAGGTTACCGATGGTGCCCGAGGCTCCCGCACATCCAAGCACCAAGGTGCCGAT
GGTGCCCAAGGCTCCCGCACGACCAAGGGCATAGGTGTCGATGCTCCCGAGGCTCTCGCACGACC
AAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGGTACCGATGGT
GCCTGAGGCTCCCGCACGACCGGGGCCAT
Found at i:97466592 original size:24 final size:24
Alignment explanation
Indices: 97466565--97466611 Score: 58
Period size: 24 Copynumber: 2.0 Consensus size: 24
97466555 TTCCGGGATG
*
97466565 GCTCACCAAAGCACCGCCGGGAAA
1 GCTCACCAAACCACCGCCGGGAAA
* **
97466589 GCTCGCCGGACCACCGCCGGGAA
1 GCTCACCAAACCACCGCCGGGAA
97466612 CCTAACCGGC
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
24 19 1.00
ACGTcount: A:0.26, C:0.40, G:0.30, T:0.04
Consensus pattern (24 bp):
GCTCACCAAACCACCGCCGGGAAA
Found at i:97472137 original size:58 final size:59
Alignment explanation
Indices: 97472047--97472166 Score: 179
Period size: 58 Copynumber: 2.1 Consensus size: 59
97472037 GGAGGGACAA
* *
97472047 GGACGATTCATTCATTGTTGGGTACCGAACATGCAACGATATCTGAATTCTAGC-TTTG
1 GGACGATTCATTCATTATTGGGTACCGAACATGCAACGATATCTGAATTCTACCTTTTG
* * * *
97472105 GGACGGTTCATTTATTATTGGGTACCGAACATGTAACGGTATCTGAATTCTACCTTTTG
1 GGACGATTCATTCATTATTGGGTACCGAACATGCAACGATATCTGAATTCTACCTTTTG
97472164 GGA
1 GGA
97472167 TTGGGGAGGG
Statistics
Matches: 55, Mismatches: 6, Indels: 1
0.89 0.10 0.02
Matches are distributed among these distances:
58 48 0.87
59 7 0.13
ACGTcount: A:0.25, C:0.17, G:0.23, T:0.34
Consensus pattern (59 bp):
GGACGATTCATTCATTATTGGGTACCGAACATGCAACGATATCTGAATTCTACCTTTTG
Found at i:97475034 original size:141 final size:141
Alignment explanation
Indices: 97474780--97475062 Score: 566
Period size: 141 Copynumber: 2.0 Consensus size: 141
97474770 CGGACTCCCT
97474780 AACGTTGCCGTCAGCCGCCGCGTCCTGCTTCAGGAATTTTAACCTGATTCTCTTTCGAAGCTCGT
1 AACGTTGCCGTCAGCCGCCGCGTCCTGCTTCAGGAATTTTAACCTGATTCTCTTTCGAAGCTCGT
97474845 GCTGAACGCGCTATCGGACGGGCTTCCCCCGTCTCTTAGGATCGACTAACCCATGTGCAAGTGCC
66 GCTGAACGCGCTATCGGACGGGCTTCCCCCGTCTCTTAGGATCGACTAACCCATGTGCAAGTGCC
97474910 GTTCACATGGA
131 GTTCACATGGA
97474921 AACGTTGCCGTCAGCCGCCGCGTCCTGCTTCAGGAATTTTAACCTGATTCTCTTTCGAAGCTCGT
1 AACGTTGCCGTCAGCCGCCGCGTCCTGCTTCAGGAATTTTAACCTGATTCTCTTTCGAAGCTCGT
97474986 GCTGAACGCGCTATCGGACGGGCTTCCCCCGTCTCTTAGGATCGACTAACCCATGTGCAAGTGCC
66 GCTGAACGCGCTATCGGACGGGCTTCCCCCGTCTCTTAGGATCGACTAACCCATGTGCAAGTGCC
97475051 GTTCACATGGA
131 GTTCACATGGA
97475062 A
1 A
97475063 CCTTTCCCCT
Statistics
Matches: 142, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
141 142 1.00
ACGTcount: A:0.19, C:0.31, G:0.24, T:0.26
Consensus pattern (141 bp):
AACGTTGCCGTCAGCCGCCGCGTCCTGCTTCAGGAATTTTAACCTGATTCTCTTTCGAAGCTCGT
GCTGAACGCGCTATCGGACGGGCTTCCCCCGTCTCTTAGGATCGACTAACCCATGTGCAAGTGCC
GTTCACATGGA
Found at i:97478085 original size:46 final size:46
Alignment explanation
Indices: 97478035--97478210 Score: 210
Period size: 46 Copynumber: 3.8 Consensus size: 46
97478025 TGGTTGAGCA
*
97478035 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
*** * * ** *
97478081 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTA-ACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATGGATGC-AAACG
* *
97478128 TCCGAGCTCGTTGAGTTGAGTCCGAGTTTACTTATGGATGCAAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* *
97478174 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
97478211 GCGGGTTACA
Statistics
Matches: 106, Mismatches: 21, Indels: 6
0.80 0.16 0.05
Matches are distributed among these distances:
46 72 0.68
47 34 0.32
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
Found at i:97478191 original size:93 final size:93
Alignment explanation
Indices: 97478032--97478202 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 93
97478022 GGATGGTTGA
* *
97478032 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
97478097 TGAGTCCGAGTTCGAGAGATGTAACTAG
66 TGAGTCCGAGTTCGAGAGATGTAACTAG
* * *
97478125 GCATCCGAGCTCGTTGAGTTGAGTCCGAGTTTACTTATGGATGCAAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
97478190 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
97478203 ACTTATGGGC
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGAGAGATGTAACTAG
Found at i:97481311 original size:58 final size:59
Alignment explanation
Indices: 97481221--97481334 Score: 158
Period size: 58 Copynumber: 1.9 Consensus size: 59
97481211 ACAAGGATGA
* * *
97481221 TTCATTTATTGTTGGGCACCAAACATGCAACGGTATCTGAATTCTAGC-TTTGGGACGG
1 TTCATTTATTATTGGGCACCAAACATGCAACGGTATCTAAATTCTACCTTTTGGGACGG
* * * *
97481279 TTCATTTTTTATTGGGTACCGAACATGTAACGGTATCTAAATTCTACCTTTTGGGA
1 TTCATTTATTATTGGGCACCAAACATGCAACGGTATCTAAATTCTACCTTTTGGGA
97481335 TTAGGGAGGG
Statistics
Matches: 48, Mismatches: 7, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
58 41 0.85
59 7 0.15
ACGTcount: A:0.25, C:0.18, G:0.21, T:0.37
Consensus pattern (59 bp):
TTCATTTATTATTGGGCACCAAACATGCAACGGTATCTAAATTCTACCTTTTGGGACGG
Found at i:97481883 original size:23 final size:23
Alignment explanation
Indices: 97481853--97481901 Score: 98
Period size: 23 Copynumber: 2.1 Consensus size: 23
97481843 AATTGAACAA
97481853 GTGCCTGGACCACGGCCCCCGTT
1 GTGCCTGGACCACGGCCCCCGTT
97481876 GTGCCTGGACCACGGCCCCCGTT
1 GTGCCTGGACCACGGCCCCCGTT
97481899 GTG
1 GTG
97481902 TCATGTTTCC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 26 1.00
ACGTcount: A:0.08, C:0.41, G:0.33, T:0.18
Consensus pattern (23 bp):
GTGCCTGGACCACGGCCCCCGTT
Found at i:97488610 original size:43 final size:43
Alignment explanation
Indices: 97487560--97492177 Score: 3736
Period size: 43 Copynumber: 109.0 Consensus size: 43
97487550 CCCTGCTGCT
* * * * *
97487560 CGAGGCACCCGCAC-ATCCAACGTCCTAGGTTGCCTATGGTGTC
1 CGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGCCGATGGTGCC
** * * * *
97487603 CGAGGCTCCCGCAC-ATCCAAGCACCAAGG-TGCCAATGCTGCT
1 CGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGCCGATGGTGCC
* * * * *
97487645 TGAGGCTCCCGCA-TATCCGAGGCACCAAGG-TGCCGATGGTGCC
1 CGAGGCTCCCGCACGA-CCAAGG-GCCTAGGTTGCCGATGGTGCC
* * *
97487688 CGAGGCTCTCGCACGACCAATGGCCTAGGTTACCGATGGTGCC
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCC
* *
97487731 CGAGGCTCCTGCAACGACCAAGGGCCTAGGTTGCCGATGGTGTC
1 CGAGGCTCCCGC-ACGACCAAGGGCCTAGGTTGCCGATGGTGCC
* ** * *
97487775 CAAGGCTCCCGCAC-ATCCAAGCACCAAGG-TGCCGATGGTGCT
1 CGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGCCGATGGTGCC
* * * * *
97487817 TGAGGCTCCCGCA-TATCCGAGGCACCAAGG-TGCCGATGGTGCC
1 CGAGGCTCCCGCACGA-CCAAGG-GCCTAGGTTGCCGATGGTGCC
* * *
97487860 CGAGGCTCTCGCACGACCAATGGCCTAGGTTACCGATGGTGCC
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCC
* *
97487903 CGAGGCTCCTGCAACGACCAAGGGCCTAGGTTGCCGATGGTGTC
1 CGAGGCTCCCGC-ACGACCAAGGGCCTAGGTTGCCGATGGTGCC
* ** * * * *
97487947 CAAGGCTCCCGCAC-ATCCAAGCACCAAGG-TGCCAATGCTGCT
1 CGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGCCGATGGTGCC
* * * * *
97487989 TGAGGCTCCCGCA-TATCCGAGGCACCAAGG-TGCCGATGGTGCC
1 CGAGGCTCCCGCACGA-CCAAGG-GCCTAGGTTGCCGATGGTGCC
* * *
97488032 CGAGGCTCTCGCACGACCAATGGCCTAGGTTACCGATGGTGCC
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCC
* *
97488075 CGAGGCTCCTGCAACGACCAAGGGCCTAGGTTGCCGATGGTGTC
1 CGAGGCTCCCGC-ACGACCAAGGGCCTAGGTTGCCGATGGTGCC
* ** * * * *
97488119 CAAGGCTCCCGCAC-ATCCAAGCACCAAGG-TGCCAATGCTGCT
1 CGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGCCGATGGTGCC
* * * * *
97488161 TGAGGCTCCCGCA-TATCCGAGGCACCAAGG-TGCCGATGGTGCC
1 CGAGGCTCCCGCACGA-CCAAGG-GCCTAGGTTGCCGATGGTGCC
* * *
97488204 CGAGGCTCTCGCACGACCAATGGCCTAGGTTACCGATGGTGCC
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCC
* *
97488247 CGAGGCTCCTGCAACGACCAAGGGCCTAGGTTGCCGATGGTGTC
1 CGAGGCTCCCGC-ACGACCAAGGGCCTAGGTTGCCGATGGTGCC
* ** * * * *
97488291 CAAGGCTCCCGCAC-ATCCAAGCACCAAGG-TGCCAATGCTGCT
1 CGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGCCGATGGTGCC
* * * * *
97488333 TGAGGCTCCCGCA-TATCCGAGGCACCAAGG-TGCCGATGGTGCC
1 CGAGGCTCCCGCACGA-CCAAGG-GCCTAGGTTGCCGATGGTGCC
* * *
97488376 CGAGGCTCTCGCACGACCAATGGCCTAGGTTACCGATGGTGCC
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCC
* *
97488419 CGAGGCTCCTGCAACGACCAAGGGCCTAGGTTGCCGATGGTGTC
1 CGAGGCTCCCGC-ACGACCAAGGGCCTAGGTTGCCGATGGTGCC
* ** *
97488463 CAAGGCTCCCGCAC-ATCCAAGCACCAAGG-TGCCGATGGTGCC
1 CGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGCCGATGGTGCC
* * * *
97488505 CTAGGCTCCCGCACGACC-AGGGTCCTAGTTTGCCGATGCTTCC
1 CGAGGCTCCCGCACGACCAAGGG-CCTAGGTTGCCGATGGTGCC
* * * *
97488548 CGAGGCTCCCGTACAACCAAGGGCCTAGGTAGCCGATGGTGTC
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCC
*
97488591 CGAGGCTCCCGCACGACCAAGGGCCAAGG-TGCCGATGGT-CC
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCC
*
97488632 CGAGGCTCCCGCATGACCAAGGGCCTAAGG-TGCCGATGGTGCC
1 CGAGGCTCCCGCACGACCAAGGGCCT-AGGTTGCCGATGGTGCC
* * *
97488675 CGAGGCTCTCGCACGACTAGGGGCCTAGGTTGCCGATGGTGCC
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCC
* * *
97488718 CAAGGCTCCCGCACGACCAAAGGCCTAGGTTGCTGATGGTGCC
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCC
* ** * * * *
97488761 AGAGGCTCTTGTACGA-CTAGCGGCCTAGGTAGCCGATGGT-AC
1 CGAGGCTCCCGCACGACCAAG-GGCCTAGGTTGCCGATGGTGCC
*** * * *
97488803 CGAGGCTTTTGGACGACCAGGGGCCTAGGTTGTCGATGGTGCC
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCC
*
97488846 CGAGGCTCCCGCACGACCAGGGGCCTAGGTTGCCGATGGTGCC
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCC
* * *
97488889 CGAGGCTCTCGCACGACCAAAGGCCTAGGTTGCCAATGGT-CC
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCC
** * * * * * **
97488931 CGAGGCTTTCTCACGACTAGGGGCCTAGGTGGCCAATACTGCC
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCC
*
97488974 CGAGGCTCCCGCACGACCAGGGGCCTAGGTTGCCGATGGTGCC
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCC
* * *
97489017 CGAGGCTCTCGCACGACCAAAGGCCTAGGTTGCCAATGGT-CC
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCC
** * * * * * **
97489059 CGAGGCTTTCTCACGACTAGGGGCCTAGGTGGCCAATACTGCC
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCC
*
97489102 CGAGGCTCCCGCACGACCAGGGGCCTAGGTTGCCGATGGTGCC
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCC
* * *
97489145 CGAGGCTCTCGCACGACCAAAGGCCTAGGTTGCCAATGGT-CC
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCC
** * * * * * **
97489187 CGAGGCTTTCTCACGACTAGGGGCCTAGGTGGCCAATACTGCC
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCC
*
97489230 CGAGGCTCCCGCACGACCAGGGGCCTAGGTTGCCGATGGTGCC
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCC
* * * *
97489273 CGAGGCTCCCACACGACC-AGGGAACTAGGTTGTCGATGGTGTC
1 CGAGGCTCCCGCACGACCAAGGG-CCTAGGTTGCCGATGGTGCC
* * ** *
97489316 CGAGGCTCCCGTACGACTAAGGGCCTAGGGAGCCGATGGTGTC
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCC
* * * *
97489359 CGAGGCTCCCGTACGACTAAGGGCCTAGGTAGCCGATGGTGTC
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCC
*
97489402 CGAGGCTCCCGCACGACCAAGGGCCAAGG-TGCCGATGGT-CC
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCC
* *
97489443 CGAGGCTCCAGCACGACC-AGTGGCCTAGGTTACCGATGGTGCC
1 CGAGGCTCCCGCACGACCAAG-GGCCTAGGTTGCCGATGGTGCC
* * **
97489486 AGAGGCTCCCGCACGACCAGGGGCCTAGGTAACCGATGGT-CC
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCC
* * * * *
97489528 CGAGGCTCTCGGACGACCAGGGGCCTAGGTTGTCGATGGTGTC
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCC
* * *
97489571 TGAGGCTCCCGCACGACCAGGGGCCTCGGTTGCCGATGGTGCC
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCC
* * *
97489614 CGAGGCTCCCGCATGACC-AGGGTCCTAGGTTGCCGTTGGTGTC
1 CGAGGCTCCCGCACGACCAAGGG-CCTAGGTTGCCGATGGTGCC
* ** * * *
97489657 CGAGGCTCCCACAC-ATCCAAGCACCAAAG-TGCCGATGGTGTC
1 CGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGCCGATGGTGCC
* * * ** *
97489699 TGAAGCTCCCCCAC-ATCCAAGCACCAAGG-TGCCGATGGTGCC
1 CGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGCCGATGGTGCC
* * *
97489741 CGAGGCTCCCGCATGACC-AGGGTCCTAGGTTGCCGTTGGTGTC
1 CGAGGCTCCCGCACGACCAAGGG-CCTAGGTTGCCGATGGTGCC
* ** * * *
97489784 CGAGGCTCCCACAC-ATCCAAGCACCAAAG-TGCCGATGGTGTC
1 CGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGCCGATGGTGCC
* * * ** *
97489826 TGAAGCTCCCCCAC-ATCCAAGCACCAAGG-TGCCGATGGTGCC
1 CGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGCCGATGGTGCC
* * *
97489868 CGAGGCTCCCGCATGACC-AGGGTCCTAGGTTGCCGTTGGTGTC
1 CGAGGCTCCCGCACGACCAAGGG-CCTAGGTTGCCGATGGTGCC
* ** * * *
97489911 CGAGGCTCCCACAC-ATCCAAGCACCAAAG-TGCCGATGGTGTC
1 CGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGCCGATGGTGCC
* * * ** *
97489953 TGAAGCTCCCCCAC-ATCCAAGCACCAAGG-TGCCGATGGTGCC
1 CGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGCCGATGGTGCC
* * *
97489995 CGAGGCTCCCGCACGACCAAGGGCGTAGG-TGCTGATTGTGCC
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCC
* *
97490037 CGAGGCTCTCGCACGACCAAAGGCCTAGGTTGCCGATGGT-CC
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCC
** * * * * * *
97490079 CGAGGCTTTCTCACGACTAGGGGCCTAGGTTACCGATGCTGTC
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCC
* *
97490122 CGCGGCTCCCGCACGACCAGGGGCCTAGGTTGCCGATGGTGCC
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCC
*
97490165 CGAGGCTCCCGCACGACCAAGGGCCAAGG-TGCCGATGGT-CC
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCC
* * * *
97490206 CGAGGCTCTCGCACGACCAAGGACCTAGGGTGTCGATGGTGCC
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCC
*
97490249 CGAGGCTCCCGCACGACCAAGGGCCAAGG-TGCCGATGGT-CC
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCC
* * * *
97490290 CGAGGCTCTCGCACGACCAAGGACCTAGGGTGTCGATGGTGCC
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCC
* * *
97490333 CGAGGCTCTCGCACGACCAGGGGCCTAGGTTGCCAATGGT-CC
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCC
** * * * * * *
97490375 CGAGGCTTTCTCACGACTAGGGGCCTAGGTTACCGATGCTGTC
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCC
* * *
97490418 CGCGGCTCCCGCACGACCAGGGGCCTAGG-T-NC-----T-CC
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCC
* ** * * * * * * * *
97490453 CG-CGCGACC-AAAGGCCTAGGTACCGATGCTGCCCGA-GGCT-CC
1 CGAGGCTCCCGCACGACCAAGG-GCCTAGGTTG-CCGATGG-TGCC
** * * * * * *
97490495 CGCA--CGACC-AAGGGCCTAGGTTACCGATGG-TGTCCGA-GGCT-CC
1 CG-AGGCTCCCGCACGACCAAGG--GCCTA-GGTTG-CCGATGG-TGCC
*
97490538 CGTA--CATCCAAGCACG---AA-GG--T--G-T--CGATGGTGCC
1 CG-AGGC-TCC-CGCACGACCAAGGGCCTAGGTTGCCGATGGTGCC
* *
97490571 CGAGGCTCCCGCACGACCAGGGGCC-AGGGTTACCGATGGTGCC
1 CGAGGCTCCCGCACGACCAAGGGCCTA-GGTTGCCGATGGTGCC
* ** * ** *
97490614 AGAGGCTCCCTTACGACCAGGGGCCTAGGTAACTGATGGT-CC
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCC
* * * * *
97490656 CGAGGCTCTCGAACGACCAAGGGCCCAGGTTGTCGATGGTGTC
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCC
* * * *
97490699 CAAGGCTCCCGCACGACTAGGGGCCTAGGTTACCGATGGTGCC
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCC
* *
97490742 CGAGGCTCCCGCACGACC-AGGGTCCTAGGTTGCCGTTGGTGTC
1 CGAGGCTCCCGCACGACCAAGGG-CCTAGGTTGCCGATGGTGCC
** * * *
97490785 CGAGGCTCCCGCAC-ATCCAAGCACCAAAG-TGCCGATGGTGTC
1 CGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGCCGATGGTGCC
* * ** * *
97490827 TGAGGCTCCCCCAC-ATCCAAGCACCAAGG-TGTCGATGGTGCC
1 CGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGCCGATGGTGCC
* *
97490869 CGAGGCTCCCGCACGACCAAGGGCGTAGGTTACCGATGGTGCC
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCC
* * **
97490912 AGAGGCTCCCGCACGACCAGGGGCCTAGGTAACCGATGGT-CC
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCC
* * * * *
97490954 CGAGGCTCTCGGACGACCAGGGGCCTAGGTTGTCGATGGTGTC
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCC
* * *
97490997 TGAGGCTCCCGCACGACCAGGGGCCTCGGTTGCCGATGGTGCC
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCC
* * *
97491040 CGAGGCTCCCGCATGACC-AGGGTCCTAGGTTGCCGTTGGTGTC
1 CGAGGCTCCCGCACGACCAAGGG-CCTAGGTTGCCGATGGTGCC
* ** * *
97491083 CGAGGCTCCCACAC-ATCCAAGCACCAAAG-TGCCGATGGT---
1 CGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGCCGATGGTGCC
* * *
97491122 ----G-T-CTG--TGACCAAGGGCCTAGGTTACCGATGGT-CC
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCC
* * * * *
97491156 CGAGGCTCTCTCACGACTAGGGGCCTAGGTTGCCGATGCTGCC
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCC
* * *
97491199 CGAGACTCCCACACGACCAGGGGCCTAGGTTGCCGATGGTGCC
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCC
* * * *
97491242 CGAGGCTCCTGCACGACCAGGGGACTAGGTTGCCAATGGTGCC
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCC
* * **
97491285 CGAGGCTCCCGCACGGCCAGGGGCCTAGGTTGCCGATGGTGTT
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCC
* ** * * *
97491328 TGAGGCTCCCGCAC-ATCCAAGCACCAAAG-TGCCGATGGTGTC
1 CGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGCCGATGGTGCC
* ** *
97491370 CGAGGCTCCCACAC-ATCCAAGCACCAAGG-TGCCGATGGTGCC
1 CGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGCCGATGGTGCC
* * * *
97491412 AGAGGCTCCCGCACGACCCAGGGCCTAGATTACCGATGGTG-C
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCC
* ***
97491454 CGAGGCTCTCC-CACGACCAAGGGCTTAGGTTGGAAATGGTGCC
1 CGAGGCTC-CCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCC
*
97491497 CGAGGCTCTCGCACGACCAAGGG-CTAAGGTTGCCGATGGTGCC
1 CGAGGCTCCCGCACGACCAAGGGCCT-AGGTTGCCGATGGTGCC
* **
97491540 CGAGGCTCCCGCACGACCGAGGGCCTAGGTTATCGATGGTGCC
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCC
* * * *
97491583 CGAGGCTCCGGCATGTCCAAGGGCCTAGGTTGCCGATGGTGTTC
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTG-CC
** * * * *
97491627 C-AGGCTCCCGCAC-ATCCAAGCACCAAGG-TACCGATAGTGTC
1 CGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGCCGATGGTGCC
* * *
97491668 CGAGGCTCCTGCCCGACCAAGGGCCTAGGTTGCCGATGTTGCC
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCC
* * * *
97491711 CGAGGCTCCCGCACAACCAGGGGCCTAGGTTGCAGATGGTGTC
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCC
* *
97491754 CAAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGTC
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCC
* * * * *
97491797 TGAGGCTTCCGCAC-ATCCAAGGGCCTAGGTTACCAATGGTGTC
1 CGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGCCGATGGTGCC
* * * * ** *
97491840 TGAGGCTCCCACACGGCAAAGCACCAAGG-TGCCGATGGTGCC
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCC
* * * *
97491882 CAAGGCTCCCACGA-GACCAAGGGCCTAGTTTGTCGATGGTGCC
1 CGAGGCTCCCGC-ACGACCAAGGGCCTAGGTTGCCGATGGTGCC
* *
97491925 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTTCCGATGGTGTC
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCC
* *
97491968 TGAGGTTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTG-C
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCC
* ** * * *
97492010 TGAGGCTCTTGTACGACCAAGGGCCTAGGTTACCGATAGTGCC
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCC
* *
97492053 CGAGGCTCCCGCATGACCAAGGGCCTAGGTTACCGATGGTG-C
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCC
* * * ** * * *
97492095 CGACGCTCTCGCAC-ATCCGAGCACC-AGGGTGCTGATGGTGCG
1 CGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGCCGATGGTGCC
* * * * * *
97492137 CGGGGCTCCAGCACAACCAAGAGCCTAGTTTTCCGATGGTG
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTG
97492178 TCTGAGTCTC
Statistics
Matches: 3727, Mismatches: 698, Indels: 300
0.79 0.15 0.06
Matches are distributed among these distances:
31 9 0.00
32 20 0.01
33 16 0.00
34 10 0.00
35 8 0.00
36 3 0.00
37 1 0.00
38 1 0.00
39 1 0.00
40 3 0.00
41 130 0.03
42 1195 0.32
43 2107 0.57
44 221 0.06
46 2 0.00
ACGTcount: A:0.19, C:0.32, G:0.32, T:0.17
Consensus pattern (43 bp):
CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCC
Found at i:97488629 original size:128 final size:128
Alignment explanation
Indices: 97487560--97492108 Score: 3601
Period size: 128 Copynumber: 35.4 Consensus size: 128
97487550 CCCTGCTGCT
* * * * *
97487560 CGAGGCACCCGCAC-ATCCAACGTCCTAGGTTGCCTATGGTGTCCGAGGCTCCCGCAC-ATCCAA
1 CGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAA
** * * * * ** * * * *
97487623 GCACCAAGG-TGCCAATGCTGCTTGAGGCTCCCGCA-TATCCGAGGCACCAAGGTGCCGATGGTG
64 GGGCCTAGGTTGCCGATGGTTCCCGAGGCTCCCGCACGA-CCAAGG-GCCTAGGTGCCGATGGTG
97487686 CC
127 CC
* * * *
97487688 CGAGGCTCTCGCACGACCAATGGCCTAGGTTACCGATGGTGCCCGAGGCTCCTGCAACGACCAAG
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGC-ACGACCAAG
* ** *
97487753 GGCCTAGGTTGCCGATGGTGT-CCAAGGCTCCCGCAC-ATCCAAGCACCAAGGTGCCGATGGTGC
65 GGCCTAGGTTGCCGATGGT-TCCCGAGGCTCCCGCACGA-CCAAGGGCCTAGGTGCCGATGGTGC
*
97487816 T
128 C
* * * * * *
97487817 TGAGGCTCCCGCA-TATCCGAGGCACCAAGG-TGCCGATGGTGCCCGAGGCTCTCGCACGACCAA
1 CGAGGCTCCCGCACGA-CCAAGG-GCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAA
* * * *
97487880 TGGCCTAGGTTACCGATGGTGCCCGAGGCTCCTGCAACGACCAAGGGCCTAGGTTGCCGATGGTG
64 GGGCCTAGGTTGCCGATGGTTCCCGAGGCTCCCGC-ACGACCAAGGGCCTAGG-TGCCGATGGTG
*
97487945 TC
127 CC
* ** * * * ** * *
97487947 CAAGGCTCCCGCAC-ATCCAAGCACCAAGG-TGCCAATGCTGCTTGAGGCTCCCGCA-TATCCGA
1 CGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAA
* * * * * *
97488009 GGCACCAAGG-TGCCGATGGTGCCCGAGGCTCTCGCACGACCAATGGCCTAGGTTACCGATGGTG
64 GG-GCCTAGGTTGCCGATGGTTCCCGAGGCTCCCGCACGACCAAGGGCCTAGG-TGCCGATGGTG
97488073 CC
127 CC
* * *
97488075 CGAGGCTCCTGCAACGACCAAGGGCCTAGGTTGCCGATGGTGTCCAAGGCTCCCGCAC-ATCCAA
1 CGAGGCTCCCGC-ACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAA
** * * * * ** * * * *
97488139 GCACCAAGG-TGCCAATGCTGCTTGAGGCTCCCGCA-TATCCGAGGCACCAAGGTGCCGATGGTG
64 GGGCCTAGGTTGCCGATGGTTCCCGAGGCTCCCGCACGA-CCAAGG-GCCTAGGTGCCGATGGTG
97488202 CC
127 CC
* * * *
97488204 CGAGGCTCTCGCACGACCAATGGCCTAGGTTACCGATGGTGCCCGAGGCTCCTGCAACGACCAAG
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGC-ACGACCAAG
* ** * * *
97488269 GGCCTAGGTTGCCGATGGTGT-CCAAGGCTCCCGCAC-ATCCAAGCACCAAGGTGCCAATGCTGC
65 GGCCTAGGTTGCCGATGGT-TCCCGAGGCTCCCGCACGA-CCAAGGGCCTAGGTGCCGATGGTGC
*
97488332 T
128 C
* * * * * *
97488333 TGAGGCTCCCGCA-TATCCGAGGCACCAAGG-TGCCGATGGTGCCCGAGGCTCTCGCACGACCAA
1 CGAGGCTCCCGCACGA-CCAAGG-GCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAA
* * * *
97488396 TGGCCTAGGTTACCGATGGTGCCCGAGGCTCCTGCAACGACCAAGGGCCTAGGTTGCCGATGGTG
64 GGGCCTAGGTTGCCGATGGTTCCCGAGGCTCCCGC-ACGACCAAGGGCCTAGG-TGCCGATGGTG
*
97488461 TC
127 CC
* ** * *
97488463 CAAGGCTCCCGCAC-ATCCAAGCACCAAGG-TGCCGATGGTGCCCTAGGCTCCCGCACGACC-AG
1 CGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAG
* * * * *
97488525 GGTCCTAGTTTGCCGATGCTTCCCGAGGCTCCCGTACAACCAAGGGCCTAGGTAGCCGATGGTGT
65 GG-CCTAGGTTGCCGATGGTTCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT-GCCGATGGTGC
97488590 C
128 C
* *
97488591 CGAGGCTCCCGCACGACCAAGGGCCAAGG-TGCCGATGGT-CCCGAGGCTCCCGCATGACCAAGG
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGG
* * * *
97488654 GCCTAAGG-TGCCGATGGTGCCCGAGGCTCTCGCACGACTAGGGGCCTAGGTTGCCGATGGTGCC
66 GCCT-AGGTTGCCGATGGTTCCCGAGGCTCCCGCACGACCAAGGGCCTAGG-TGCCGATGGTGCC
* * * * ** * *
97488718 CAAGGCTCCCGCACGACCAAAGGCCTAGGTTGCTGATGGTGCCAGAGGCTCTTGTACGA-CTAGC
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAG-
* * *** * * *
97488782 GGCCTAGGTAGCCGATGG-TACCGAGGCTTTTGGACGACCAGGGGCCTAGGTTGTCGATGGTGCC
65 GGCCTAGGTTGCCGATGGTTCCCGAGGCTCCCGCACGACCAAGGGCCTAGG-TGCCGATGGTGCC
* * *
97488846 CGAGGCTCCCGCACGACCAGGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCTCGCACGACCAAAG
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGG
* ** * * * * **
97488911 GCCTAGGTTGCCAATGG-TCCCGAGGCTTTCTCACGACTAGGGGCCTAGGTGGCCAATACTGCC
66 GCCTAGGTTGCCGATGGTTCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT-GCCGATGGTGCC
* * *
97488974 CGAGGCTCCCGCACGACCAGGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCTCGCACGACCAAAG
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGG
* ** * * * * **
97489039 GCCTAGGTTGCCAATGG-TCCCGAGGCTTTCTCACGACTAGGGGCCTAGGTGGCCAATACTGCC
66 GCCTAGGTTGCCGATGGTTCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT-GCCGATGGTGCC
* * *
97489102 CGAGGCTCCCGCACGACCAGGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCTCGCACGACCAAAG
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGG
* ** * * * * **
97489167 GCCTAGGTTGCCAATGG-TCCCGAGGCTTTCTCACGACTAGGGGCCTAGGTGGCCAATACTGCC
66 GCCTAGGTTGCCGATGGTTCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT-GCCGATGGTGCC
* *
97489230 CGAGGCTCCCGCACGACCAGGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCACACGACC-AGG
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGG
* * * * * *
97489294 GAACTAGGTTGTCGATGGTGT-CCGAGGCTCCCGTACGACTAAGGGCCTAGGGAGCCGATGGTGT
66 G-CCTAGGTTGCCGATGGT-TCCCGAGGCTCCCGCACGACCAAGGGCCTA-GGTGCCGATGGTGC
97489358 C
128 C
* * * *
97489359 CGAGGCTCCCGTACGACTAAGGGCCTAGGTAGCCGATGGTGTCCGAGGCTCCCGCACGACCAAGG
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGG
* * *
97489424 GCCAAGG-TGCCGATGG-TCCCGAGGCTCCAGCACGACC-AGTGGCCTAGGTTACCGATGGTGCC
66 GCCTAGGTTGCCGATGGTTCCCGAGGCTCCCGCACGACCAAG-GGCCTAGG-TGCCGATGGTGCC
* * ** * * *
97489486 AGAGGCTCCCGCACGACCAGGGGCCTAGGTAACCGATGGT-CCCGAGGCTCTCGGACGACCAGGG
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGG
* * * *
97489550 GCCTAGGTTGTCGATGGTGT-CTGAGGCTCCCGCACGACCAGGGGCCTCGGTTGCCGATGGTGCC
66 GCCTAGGTTGCCGATGGT-TCCCGAGGCTCCCGCACGACCAAGGGCCTAGG-TGCCGATGGTGCC
* * * *
97489614 CGAGGCTCCCGCATGACC-AGGGTCCTAGGTTGCCGTTGGTGTCCGAGGCTCCCACAC-ATCCAA
1 CGAGGCTCCCGCACGACCAAGGG-CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAA
** * * * * * ** *
97489677 GCACCAAAG-TGCCGATGGTGT-CTGAAGCTCCCCCAC-ATCCAAGCACCAAGGTGCCGATGGTG
64 GGGCCTAGGTTGCCGATGGT-TCCCGAGGCTCCCGCACGA-CCAAGGGCCTAGGTGCCGATGGTG
97489739 CC
127 CC
* * * *
97489741 CGAGGCTCCCGCATGACC-AGGGTCCTAGGTTGCCGTTGGTGTCCGAGGCTCCCACAC-ATCCAA
1 CGAGGCTCCCGCACGACCAAGGG-CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAA
** * * * * * ** *
97489804 GCACCAAAG-TGCCGATGGTGT-CTGAAGCTCCCCCAC-ATCCAAGCACCAAGGTGCCGATGGTG
64 GGGCCTAGGTTGCCGATGGT-TCCCGAGGCTCCCGCACGA-CCAAGGGCCTAGGTGCCGATGGTG
97489866 CC
127 CC
* * * *
97489868 CGAGGCTCCCGCATGACC-AGGGTCCTAGGTTGCCGTTGGTGTCCGAGGCTCCCACAC-ATCCAA
1 CGAGGCTCCCGCACGACCAAGGG-CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAA
** * * * * * ** *
97489931 GCACCAAAG-TGCCGATGGTGT-CTGAAGCTCCCCCAC-ATCCAAGCACCAAGGTGCCGATGGTG
64 GGGCCTAGGTTGCCGATGGT-TCCCGAGGCTCCCGCACGA-CCAAGGGCCTAGGTGCCGATGGTG
97489993 CC
127 CC
* * * * *
97489995 CGAGGCTCCCGCACGACCAAGGGCGTAGG-TGCTGATTGTGCCCGAGGCTCTCGCACGACCAAAG
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGG
** * * * * * *
97490059 GCCTAGGTTGCCGATGG-TCCCGAGGCTTTCTCACGACTAGGGGCCTAGGTTACCGATGCTGTC
66 GCCTAGGTTGCCGATGGTTCCCGAGGCTCCCGCACGACCAAGGGCCTAGG-TGCCGATGGTGCC
* *
97490122 CGCGGCTCCCGCACGACCAGGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGG
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGG
* * * *
97490187 GCCAAGG-TGCCGATGG-TCCCGAGGCTCTCGCACGACCAAGGACCTAGGGTGTCGATGGTGCC
66 GCCTAGGTTGCCGATGGTTCCCGAGGCTCCCGCACGACCAAGGGCCTA-GGTGCCGATGGTGCC
* *
97490249 CGAGGCTCCCGCACGACCAAGGGCCAAGG-TGCCGATGGT-CCCGAGGCTCTCGCACGACCAAGG
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGG
* * * * * * *
97490312 ACCTAGGGTGTCGATGGTGCCCGAGGCTCTCGCACGACCAGGGGCCTAGGTTGCCAATGGT-CC
66 GCCTAGGTTGCCGATGGTTCCCGAGGCTCCCGCACGACCAAGGGCCTAGG-TGCCGATGGTGCC
** * * * * * * * *
97490375 CGAGGCTTTCTCACGACTAGGGGCCTAGGTTACCGATGCTGTCCGCGGCTCCCGCACGACCAGGG
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGG
* * *
97490440 GCCTAGGTNCTCCCGCGCGACCAAAGGCCTAGGTACCGATGCTGCCCGAGGCTCCCGCACGACCA
66 GCCTAGGT--T---GC-CG----ATGG--T---TCCCGAGGCT-CCC---------GCACGACCA
* *
97490505 AGGGCCTAGGTTACCGATGGTGTC
106 AGGGCCTAGG-TGCCGATGGTGCC
* ** ** * *
97490529 CGAGGCTCCCGTAC-ATCCAAGCACGAAGG-TGTCGATGGTGCCCGAGGCTCCCGCACGACCAGG
1 CGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAG
* * * ** * * *
97490592 GGCC-AGGGTTACCGATGGTGCCAGAGGCTCCCTTACGACCAGGGGCCTAGGTAACTGATGGT-C
65 GGCCTA-GGTTGCCGATGGTTCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT-GCCGATGGTGC
97490655 C
128 C
* * * * * * * *
97490656 CGAGGCTCTCGAACGACCAAGGGCCCAGGTTGTCGATGGTGTCCAAGGCTCCCGCACGACTAGGG
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGG
* * * *
97490721 GCCTAGGTTACCGATGGTGCCCGAGGCTCCCGCACGACC-AGGGTCCTAGGTTGCCGTTGGTGTC
66 GCCTAGGTTGCCGATGGTTCCCGAGGCTCCCGCACGACCAAGGG-CCTAGG-TGCCGATGGTGCC
** * * * * *
97490785 CGAGGCTCCCGCAC-ATCCAAGCACCAAAG-TGCCGATGGTGTCTGAGGCTCCCCCAC-ATCCAA
1 CGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAA
** * * * * *
97490847 GCACCAAGG-TGTCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCGTAGGTTACCGATGGTGC
64 GGGCCTAGGTTGCCGATGGTTCCCGAGGCTCCCGCACGACCAAGGGCCTAGG-TGCCGATGGTGC
97490911 C
128 C
* * ** * * *
97490912 AGAGGCTCCCGCACGACCAGGGGCCTAGGTAACCGATGGT-CCCGAGGCTCTCGGACGACCAGGG
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGG
* * * *
97490976 GCCTAGGTTGTCGATGGTGT-CTGAGGCTCCCGCACGACCAGGGGCCTCGGTTGCCGATGGTGCC
66 GCCTAGGTTGCCGATGGT-TCCCGAGGCTCCCGCACGACCAAGGGCCTAGG-TGCCGATGGTGCC
* * * *
97491040 CGAGGCTCCCGCATGACC-AGGGTCCTAGGTTGCCGTTGGTGTCCGAGGCTCCCACAC-ATCCAA
1 CGAGGCTCCCGCACGACCAAGGG-CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAA
** * * * * *
97491103 GCACCAAAG-TGCCGATGG-T------G-T-CTG--TGACCAAGGGCCTAGGTTACCGATGGT-C
64 GGGCCTAGGTTGCCGATGGTTCCCGAGGCTCCCGCACGACCAAGGGCCTAGG-TGCCGATGGTGC
97491155 C
128 C
* * * * * * * *
97491156 CGAGGCTCTCTCACGACTAGGGGCCTAGGTTGCCGATGCTGCCCGAGACTCCCACACGACCAGGG
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGG
* * * * *
97491221 GCCTAGGTTGCCGATGGTGCCCGAGGCTCCTGCACGACCAGGGGACTAGGTTGCCAATGGTGCC
66 GCCTAGGTTGCCGATGGTTCCCGAGGCTCCCGCACGACCAAGGGCCTAGG-TGCCGATGGTGCC
* * ***
97491285 CGAGGCTCCCGCACGGCCAGGGGCCTAGGTTGCCGATGGTGTTTGAGGCTCCCGCAC-ATCCAAG
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAG
** * * * ** *
97491349 CACCAAAG-TGCCGATGGTGT-CCGAGGCTCCCACAC-ATCCAAGCACCAAGGTGCCGATGGTGC
65 GGCCTAGGTTGCCGATGGT-TCCCGAGGCTCCCGCACGA-CCAAGGGCCTAGGTGCCGATGGTGC
97491411 C
128 C
* * * *
97491412 AGAGGCTCCCGCACGACCCAGGGCCTAGATTACCGATGGTG-CCGAGGCTCTCC-CACGACCAAG
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTC-CCGCACGACCAAG
* *** * *
97491475 GGCTTAGGTTGGAAATGGTGCCCGAGGCTCTCGCACGACCAAGGG-CTAAGGTTGCCGATGGTGC
65 GGCCTAGGTTGCCGATGGTTCCCGAGGCTCCCGCACGACCAAGGGCCT-AGG-TGCCGATGGTGC
97491539 C
128 C
* ** * * *
97491540 CGAGGCTCCCGCACGACCGAGGGCCTAGGTTATCGATGGTGCCCGAGGCTCCGGCATGTCCAAGG
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGG
* ** * * * *
97491605 GCCTAGGTTGCCGATGGTGTTCC-AGGCTCCCGCAC-ATCCAAGCACCAAGGTACCGATAGTGTC
66 GCCTAGGTTGCCGATGGT-TCCCGAGGCTCCCGCACGA-CCAAGGGCCTAGGTGCCGATGGTGCC
* * * * *
97491668 CGAGGCTCCTGCCCGACCAAGGGCCTAGGTTGCCGATGTTGCCCGAGGCTCCCGCACAACCAGGG
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGG
* * *
97491733 GCCTAGGTTGCAGATGGTGT-CCAAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGTC
66 GCCTAGGTTGCCGATGGT-TCCCGAGGCTCCCGCACGACCAAGGGCCTAGG-TGCCGATGGTGCC
* * * * * * * * *
97491797 TGAGGCTTCCGCAC-ATCCAAGGGCCTAGGTTACCAATGGTGTCTGAGGCTCCCACACGGCAAAG
1 CGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAG
** * * * * * *
97491861 CACCAAGG-TGCCGATGGTGCCCAAGGCTCCCACGA-GACCAAGGGCCTAGTTTGTCGATGGTGC
65 GGCCTAGGTTGCCGATGGTTCCCGAGGCTCCCGC-ACGACCAAGGGCCTAG-GTGCCGATGGTGC
97491924 C
128 C
* * * *
97491925 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTTCCGATGGTGTCTGAGGTTCCCGCACGACCAAGG
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGG
* * ** * * *
97491990 GCCTAGGTTGCCGATGG-TGCTGAGGCTCTTGTACGACCAAGGGCCTAGGTTACCGATAGTGCC
66 GCCTAGGTTGCCGATGGTTCCCGAGGCTCCCGCACGACCAAGGGCCTAGG-TGCCGATGGTGCC
* * * *
97492053 CGAGGCTCCCGCATGACCAAGGGCCTAGGTTACCGATGGTG-CCGACGCTCTCGCAC
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCAC
97492109 ATCCGAGCAC
Statistics
Matches: 3655, Mismatches: 605, Indels: 323
0.80 0.13 0.07
Matches are distributed among these distances:
116 54 0.01
117 36 0.01
119 2 0.00
120 1 0.00
121 1 0.00
124 1 0.00
125 30 0.01
126 146 0.04
127 834 0.23
128 1558 0.43
129 710 0.19
130 166 0.05
133 1 0.00
134 2 0.00
137 3 0.00
138 9 0.00
140 1 0.00
141 1 0.00
143 10 0.00
144 2 0.00
147 2 0.00
148 1 0.00
151 1 0.00
152 1 0.00
153 64 0.02
154 18 0.00
ACGTcount: A:0.19, C:0.33, G:0.32, T:0.17
Consensus pattern (128 bp):
CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGG
GCCTAGGTTGCCGATGGTTCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTGCCGATGGTGCC
Found at i:97489697 original size:42 final size:42
Alignment explanation
Indices: 97489644--97490340 Score: 414
Period size: 42 Copynumber: 16.5 Consensus size: 42
97489634 GGTCCTAGGT
* *
97489644 TGCCGTTGGTGTCCGAGGCTCCCACACATCCAAGCACCAAAG
1 TGCCGATGGTGTCCGAGGCTCCCACACATCCAAGCACCAAGG
* * *
97489686 TGCCGATGGTGTCTGAAGCTCCCCCACATCCAAGCACCAAGG
1 TGCCGATGGTGTCCGAGGCTCCCACACATCCAAGCACCAAGG
* * * * ** *
97489728 TGCCGATGGTGCCCGAGGCTCCCGCATGA-CCAGGGTCCTAGG
1 TGCCGATGGTGTCCGAGGCTCCCACA-CATCCAAGCACCAAGG
* *
97489770 TTGCCGTTGGTGTCCGAGGCTCCCACACATCCAAGCACCAAAG
1 -TGCCGATGGTGTCCGAGGCTCCCACACATCCAAGCACCAAGG
* * *
97489813 TGCCGATGGTGTCTGAAGCTCCCCCACATCCAAGCACCAAGG
1 TGCCGATGGTGTCCGAGGCTCCCACACATCCAAGCACCAAGG
* * * * ** *
97489855 TGCCGATGGTGCCCGAGGCTCCCGCATGA-CCAGGGTCCTAGG
1 TGCCGATGGTGTCCGAGGCTCCCACA-CATCCAAGCACCAAGG
* *
97489897 TTGCCGTTGGTGTCCGAGGCTCCCACACATCCAAGCACCAAAG
1 -TGCCGATGGTGTCCGAGGCTCCCACACATCCAAGCACCAAGG
* * *
97489940 TGCCGATGGTGTCTGAAGCTCCCCCACATCCAAGCACCAAGG
1 TGCCGATGGTGTCCGAGGCTCCCACACATCCAAGCACCAAGG
* * ** **
97489982 TGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCGTAGG
1 TGCCGATGGTGTCCGAGGCTCCCACAC-ATCCAAGCACCAAGG
* * * * * * *
97490024 TGCTGATTGTGCCCGAGGCTCTCGCACGA-CCAAAG-GCCTAGG
1 TGCCGATGGTGTCCGAGGCTCCCACAC-ATCC-AAGCACCAAGG
* ** * * * ** *
97490066 TTGCCGATGGT-CCCGAGGCTTTCTCACGA-CTAGGGGCCTAGG
1 -TGCCGATGGTGTCCGAGGCTCCCACAC-ATCCAAGCACCAAGG
* * * * * ** *
97490108 TTACCGATGCTGTCCGCGGCTCCCGCACGA-CCAGGGGCCTAGG
1 -TGCCGATGGTGTCCGAGGCTCCCACAC-ATCCAAGCACCAAGG
* * **
97490151 TTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCAAGG
1 -TGCCGATGGTGTCCGAGGCTCCCACAC-ATCCAAGCACCAAGG
* * * * *
97490194 TGCCGATGGT-CCCGAGGCTCTCGCACGA-CCAAGGACCTAGGG
1 TGCCGATGGTGTCCGAGGCTCCCACAC-ATCCAAGCACC-AAGG
* * * **
97490236 TGTCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCAAGG
1 TGCCGATGGTGTCCGAGGCTCCCACAC-ATCCAAGCACCAAGG
* * * * *
97490278 TGCCGATGGT-CCCGAGGCTCTCGCACGA-CCAAGGACCTAGGG
1 TGCCGATGGTGTCCGAGGCTCCCACAC-ATCCAAGCACC-AAGG
* *
97490320 TGTCGATGGTGCCCGAGGCTC
1 TGCCGATGGTGTCCGAGGCTC
97490341 TCGCACGACC
Statistics
Matches: 545, Mismatches: 95, Indels: 29
0.81 0.14 0.04
Matches are distributed among these distances:
41 52 0.10
42 320 0.59
43 173 0.32
ACGTcount: A:0.19, C:0.34, G:0.31, T:0.16
Consensus pattern (42 bp):
TGCCGATGGTGTCCGAGGCTCCCACACATCCAAGCACCAAGG
Found at i:97490425 original size:85 final size:86
Alignment explanation
Indices: 97487583--97492179 Score: 3589
Period size: 85 Copynumber: 54.2 Consensus size: 86
97487573 CATCCAACGT
* ** * * * **
97487583 CCTAGGTTGCCTATGGTGTCCGAGGCTCCCGCAC-ATCCAAGCACCAAGG-TGCCAATGCTGCTT
1 CCTAGGTTGCCGATGGTGTCCGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGCCGATGGTGCCC
* **
97487646 GAGGCTCCCGCA-TATCCGAGGCA
65 GAGGCTCCCGCACGA-CC-AGGGG
* * * * *
97487669 CCAAGG-TGCCGATGGTGCCCGAGGCTCTCGCACGACCAATGGCCTAGGTTACCGATGGTGCCCG
1 CCTAGGTTGCCGATGGTGTCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCG
* *
97487733 AGGCTCCTGCAACGACCAAGGG
66 AGGCTCCCGC-ACGACCAGGGG
* ** * **
97487755 CCTAGGTTGCCGATGGTGTCCAAGGCTCCCGCAC-ATCCAAGCACCAAGG-TGCCGATGGTGCTT
1 CCTAGGTTGCCGATGGTGTCCGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGCCGATGGTGCCC
* **
97487818 GAGGCTCCCGCA-TATCCGAGGCA
65 GAGGCTCCCGCACGA-CC-AGGGG
* * * * *
97487841 CCAAGG-TGCCGATGGTGCCCGAGGCTCTCGCACGACCAATGGCCTAGGTTACCGATGGTGCCCG
1 CCTAGGTTGCCGATGGTGTCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCG
* *
97487905 AGGCTCCTGCAACGACCAAGGG
66 AGGCTCCCGC-ACGACCAGGGG
* ** * * * **
97487927 CCTAGGTTGCCGATGGTGTCCAAGGCTCCCGCAC-ATCCAAGCACCAAGG-TGCCAATGCTGCTT
1 CCTAGGTTGCCGATGGTGTCCGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGCCGATGGTGCCC
* **
97487990 GAGGCTCCCGCA-TATCCGAGGCA
65 GAGGCTCCCGCACGA-CC-AGGGG
* * * * *
97488013 CCAAGG-TGCCGATGGTGCCCGAGGCTCTCGCACGACCAATGGCCTAGGTTACCGATGGTGCCCG
1 CCTAGGTTGCCGATGGTGTCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCG
* *
97488077 AGGCTCCTGCAACGACCAAGGG
66 AGGCTCCCGC-ACGACCAGGGG
* ** * * * **
97488099 CCTAGGTTGCCGATGGTGTCCAAGGCTCCCGCAC-ATCCAAGCACCAAGG-TGCCAATGCTGCTT
1 CCTAGGTTGCCGATGGTGTCCGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGCCGATGGTGCCC
* **
97488162 GAGGCTCCCGCA-TATCCGAGGCA
65 GAGGCTCCCGCACGA-CC-AGGGG
* * * * *
97488185 CCAAGG-TGCCGATGGTGCCCGAGGCTCTCGCACGACCAATGGCCTAGGTTACCGATGGTGCCCG
1 CCTAGGTTGCCGATGGTGTCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCG
* *
97488249 AGGCTCCTGCAACGACCAAGGG
66 AGGCTCCCGC-ACGACCAGGGG
* ** * * * **
97488271 CCTAGGTTGCCGATGGTGTCCAAGGCTCCCGCAC-ATCCAAGCACCAAGG-TGCCAATGCTGCTT
1 CCTAGGTTGCCGATGGTGTCCGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGCCGATGGTGCCC
* **
97488334 GAGGCTCCCGCA-TATCCGAGGCA
65 GAGGCTCCCGCACGA-CC-AGGGG
* * * * *
97488357 CCAAGG-TGCCGATGGTGCCCGAGGCTCTCGCACGACCAATGGCCTAGGTTACCGATGGTGCCCG
1 CCTAGGTTGCCGATGGTGTCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCG
* *
97488421 AGGCTCCTGCAACGACCAAGGG
66 AGGCTCCCGC-ACGACCAGGGG
* ** *
97488443 CCTAGGTTGCCGATGGTGTCCAAGGCTCCCGCAC-ATCCAAGCACCAAGG-TGCCGATGGTGCCC
1 CCTAGGTTGCCGATGGTGTCCGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGCCGATGGTGCCC
* *
97488506 TAGGCTCCCGCACGACCAGGGT
65 GAGGCTCCCGCACGACCAGGGG
* * * * * *
97488528 CCTAGTTTGCCGATGCT-TCCCGAGGCTCCCGTACAACCAAGGGCCTAGGTAGCCGATGGTGTCC
1 CCTAGGTTGCCGATGGTGT-CCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCC
*
97488592 GAGGCTCCCGCACGACCAAGGG
65 GAGGCTCCCGCACGACCAGGGG
* * *
97488614 CCAAGG-TGCCGATGGT-CCCGAGGCTCCCGCATGACCAAGGGCCTAAGG-TGCCGATGGTGCCC
1 CCTAGGTTGCCGATGGTGTCCGAGGCTCCCGCACGACCAAGGGCCT-AGGTTGCCGATGGTGCCC
* *
97488676 GAGGCTCTCGCACGACTAGGGG
65 GAGGCTCCCGCACGACCAGGGG
* * * * *
97488698 CCTAGGTTGCCGATGGTGCCCAAGGCTCCCGCACGACCAAAGGCCTAGGTTGCTGATGGTGCCAG
1 CCTAGGTTGCCGATGGTGTCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCG
** * * *
97488763 AGGCTCTTGTACGACTAGCGG
66 AGGCTCCCGCACGACCAGGGG
* * *** * * *
97488784 CCTAGGTAGCCGATGGT-ACCGAGGCTTTTGGACGACCAGGGGCCTAGGTTGTCGATGGTGCCCG
1 CCTAGGTTGCCGATGGTGTCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCG
97488848 AGGCTCCCGCACGACCAGGGG
66 AGGCTCCCGCACGACCAGGGG
* * * *
97488869 CCTAGGTTGCCGATGGTGCCCGAGGCTCTCGCACGACCAAAGGCCTAGGTTGCCAATGGT-CCCG
1 CCTAGGTTGCCGATGGTGTCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCG
** * *
97488933 AGGCTTTCTCACGACTAGGGG
66 AGGCTCCCGCACGACCAGGGG
* * ** * *
97488954 CCTAGGTGGCCAATACTGCCCGAGGCTCCCGCACGACCAGGGGCCTAGGTTGCCGATGGTGCCCG
1 CCTAGGTTGCCGATGGTGTCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCG
* **
97489019 AGGCTCTCGCACGACCAAAGG
66 AGGCTCCCGCACGACCAGGGG
* * ** * * * * * **
97489040 CCTAGGTTGCCAATGGT-CCCGAGGCTTTCTCACGACTAGGGGCCTAGGTGGCCAATACTGCCCG
1 CCTAGGTTGCCGATGGTGTCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCG
97489104 AGGCTCCCGCACGACCAGGGG
66 AGGCTCCCGCACGACCAGGGG
* * * *
97489125 CCTAGGTTGCCGATGGTGCCCGAGGCTCTCGCACGACCAAAGGCCTAGGTTGCCAATGGT-CCCG
1 CCTAGGTTGCCGATGGTGTCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCG
** * *
97489189 AGGCTTTCTCACGACTAGGGG
66 AGGCTCCCGCACGACCAGGGG
* * ** * *
97489210 CCTAGGTGGCCAATACTGCCCGAGGCTCCCGCACGACCAGGGGCCTAGGTTGCCGATGGTGCCCG
1 CCTAGGTTGCCGATGGTGTCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCG
* *
97489275 AGGCTCCCACACGACCAGGGA
66 AGGCTCCCGCACGACCAGGGG
* * * * ** *
97489296 ACTAGGTTGTCGATGGTGTCCGAGGCTCCCGTACGACTAAGGGCCTAGGGAGCCGATGGTGTCCG
1 CCTAGGTTGCCGATGGTGTCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCG
* * *
97489361 AGGCTCCCGTACGACTAAGGG
66 AGGCTCCCGCACGACCAGGGG
* *
97489382 CCTAGGTAGCCGATGGTGTCCGAGGCTCCCGCACGACCAAGGGCCAAGG-TGCCGATGGT-CCCG
1 CCTAGGTTGCCGATGGTGTCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCG
* *
97489445 AGGCTCCAGCACGACCAGTGG
66 AGGCTCCCGCACGACCAGGGG
* * **
97489466 CCTAGGTTACCGATGGTG-CCAGAGGCTCCCGCACGACCAGGGGCCTAGGTAACCGATGGT-CCC
1 CCTAGGTTGCCGATGGTGTCC-GAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCC
* *
97489529 GAGGCTCTCGGACGACCAGGGG
65 GAGGCTCCCGCACGACCAGGGG
* * * *
97489551 CCTAGGTTGTCGATGGTGTCTGAGGCTCCCGCACGACCAGGGGCCTCGGTTGCCGATGGTGCCCG
1 CCTAGGTTGCCGATGGTGTCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCG
* *
97489616 AGGCTCCCGCATGACCAGGGT
66 AGGCTCCCGCACGACCAGGGG
* * ** * * * *
97489637 CCTAGGTTGCCGTTGGTGTCCGAGGCTCCCACAC-ATCCAAGCACCAAAG-TGCCGATGGTGTCT
1 CCTAGGTTGCCGATGGTGTCCGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGCCGATGGTGCCC
* * * **
97489700 GAAGCTCCCCCAC-ATCCAAGCA
65 GAGGCTCCCGCACGA-CCAGGGG
* * * * *
97489722 CCAAGG-TGCCGATGGTGCCCGAGGCTCCCGCATGACC-AGGGTCCTAGGTTGCCGTTGGTGTCC
1 CCTAGGTTGCCGATGGTGTCCGAGGCTCCCGCACGACCAAGGG-CCTAGGTTGCCGATGGTGCCC
* * **
97489785 GAGGCTCCCACAC-ATCCAAGCA
65 GAGGCTCCCGCACGA-CCAGGGG
* * * * * ** *
97489807 CCAAAG-TGCCGATGGTGTCTGAAGCTCCCCCAC-ATCCAAGCACCAAGG-TGCCGATGGTGCCC
1 CCTAGGTTGCCGATGGTGTCCGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGCCGATGGTGCCC
* *
97489869 GAGGCTCCCGCATGACCAGGGT
65 GAGGCTCCCGCACGACCAGGGG
* * ** * * * *
97489891 CCTAGGTTGCCGTTGGTGTCCGAGGCTCCCACAC-ATCCAAGCACCAAAG-TGCCGATGGTGTCT
1 CCTAGGTTGCCGATGGTGTCCGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGCCGATGGTGCCC
* * * **
97489954 GAAGCTCCCCCAC-ATCCAAGCA
65 GAGGCTCCCGCACGA-CCAGGGG
* * * * *
97489976 CCAAGG-TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCGTAGG-TGCTGATTGTGCCCG
1 CCTAGGTTGCCGATGGTGTCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCG
* **
97490039 AGGCTCTCGCACGACCAAAGG
66 AGGCTCCCGCACGACCAGGGG
* ** * * * * * *
97490060 CCTAGGTTGCCGATGGT-CCCGAGGCTTTCTCACGACTAGGGGCCTAGGTTACCGATGCTGTCCG
1 CCTAGGTTGCCGATGGTGTCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCG
*
97490124 CGGCTCCCGCACGACCAGGGG
66 AGGCTCCCGCACGACCAGGGG
* *
97490145 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCAAGG-TGCCGATGGT-CCCG
1 CCTAGGTTGCCGATGGTGTCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCG
* * *
97490208 AGGCTCTCGCACGACCAAGGA
66 AGGCTCCCGCACGACCAGGGG
* * * *
97490229 CCTAGGGTGTCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCAAGG-TGCCGATGGT-CCCG
1 CCTAGGTTGCCGATGGTGTCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCG
* * *
97490292 AGGCTCTCGCACGACCAAGGA
66 AGGCTCCCGCACGACCAGGGG
* * * * * *
97490313 CCTAGGGTGTCGATGGTGCCCGAGGCTCTCGCACGACCAGGGGCCTAGGTTGCCAATGGT-CCCG
1 CCTAGGTTGCCGATGGTGTCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCG
** * *
97490377 AGGCTTTCTCACGACTAGGGG
66 AGGCTCCCGCACGACCAGGGG
* * * * *
97490398 CCTAGGTTACCGATGCTGTCCGCGGCTCCCGCACGACCAGGGGCCTAGG-T-NC-----T-CCCG
1 CCTAGGTTGCCGATGGTGTCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCG
* ** * * * **
97490455 -CGCGACC-AAAGGCCTAGGTA
66 AGGCTCCCGCACGACC-AGGGG
* * * * ** * * * * * *
97490475 CCGATGCTGCCCGA-GGCT-CCCGCA--CGACC-AAGGGCCTAGGTTACCGATGG-TGTCCGA-G
1 CCTAGGTTG-CCGATGG-TGTCCG-AGGCTCCCGCACGACCAAGG--GCCTA-GGTTG-CCGATG
*
97490533 GCT-CCCGTA--CATCCAAGCACGA--A--GG
59 G-TGCCCG-AGGC-TCC-CGCACGACCAGGGG
* * * *
97490558 --T--G-T--CGATGGTGCCCGAGGCTCCCGCACGACCAGGGGCC-AGGGTTACCGATGGTGCCA
1 CCTAGGTTGCCGATGGTGTCCGAGGCTCCCGCACGACCAAGGGCCTA-GGTTGCCGATGGTGCCC
**
97490615 GAGGCTCCCTTACGACCAGGGG
65 GAGGCTCCCGCACGACCAGGGG
** * * * * * * * *
97490637 CCTAGGTAACTGATGGT-CCCGAGGCTCTCGAACGACCAAGGGCCCAGGTTGTCGATGGTGTCCA
1 CCTAGGTTGCCGATGGTGTCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCG
*
97490701 AGGCTCCCGCACGACTAGGGG
66 AGGCTCCCGCACGACCAGGGG
* * * *
97490722 CCTAGGTTACCGATGGTGCCCGAGGCTCCCGCACGACC-AGGGTCCTAGGTTGCCGTTGGTGTCC
1 CCTAGGTTGCCGATGGTGTCCGAGGCTCCCGCACGACCAAGGG-CCTAGGTTGCCGATGGTGCCC
* **
97490786 GAGGCTCCCGCAC-ATCCAAGCA
65 GAGGCTCCCGCACGA-CCAGGGG
* * * * ** * *
97490808 CCAAAG-TGCCGATGGTGTCTGAGGCTCCCCCAC-ATCCAAGCACCAAGG-TGTCGATGGTGCCC
1 CCTAGGTTGCCGATGGTGTCCGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGCCGATGGTGCCC
*
97490870 GAGGCTCCCGCACGACCAAGGG
65 GAGGCTCCCGCACGACCAGGGG
* * * **
97490892 CGTAGGTTACCGATGGTG-CCAGAGGCTCCCGCACGACCAGGGGCCTAGGTAACCGATGGT-CCC
1 CCTAGGTTGCCGATGGTGTCC-GAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCC
* *
97490955 GAGGCTCTCGGACGACCAGGGG
65 GAGGCTCCCGCACGACCAGGGG
* * * *
97490977 CCTAGGTTGTCGATGGTGTCTGAGGCTCCCGCACGACCAGGGGCCTCGGTTGCCGATGGTGCCCG
1 CCTAGGTTGCCGATGGTGTCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCG
* *
97491042 AGGCTCCCGCATGACCAGGGT
66 AGGCTCCCGCACGACCAGGGG
* * ** * *
97491063 CCTAGGTTGCCGTTGGTGTCCGAGGCTCCCACAC-ATCCAAGCACCAAAG-TGCCGATGGT----
1 CCTAGGTTGCCGATGGTGTCCGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGCCGATGGTGCCC
* * *
97491122 ---G-T-CTG--TGACCAAGGG
65 GAGGCTCCCGCACGACCAGGGG
* * * * * * *
97491137 CCTAGGTTACCGATGGT-CCCGAGGCTCTCTCACGACTAGGGGCCTAGGTTGCCGATGCTGCCCG
1 CCTAGGTTGCCGATGGTGTCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCG
* *
97491201 AGACTCCCACACGACCAGGGG
66 AGGCTCCCGCACGACCAGGGG
* * * * *
97491222 CCTAGGTTGCCGATGGTGCCCGAGGCTCCTGCACGACCAGGGGACTAGGTTGCCAATGGTGCCCG
1 CCTAGGTTGCCGATGGTGTCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCG
*
97491287 AGGCTCCCGCACGGCCAGGGG
66 AGGCTCCCGCACGACCAGGGG
** ** * * *
97491308 CCTAGGTTGCCGATGGTGTTTGAGGCTCCCGCAC-ATCCAAGCACCAAAG-TGCCGATGGTGTCC
1 CCTAGGTTGCCGATGGTGTCCGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGCCGATGGTGCCC
* * **
97491371 GAGGCTCCCACAC-ATCCAAGCA
65 GAGGCTCCCGCACGA-CCAGGGG
* * * *
97491393 CCAAGG-TGCCGATGGTG-CCAGAGGCTCCCGCACGACCCAGGGCCTAGATTACCGATGGTG-CC
1 CCTAGGTTGCCGATGGTGTCC-GAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCC
*
97491455 GAGGCTCTCC-CACGACCAAGGG
65 GAGGCTC-CCGCACGACCAGGGG
* *** * *
97491477 CTTAGGTTGGAAATGGTGCCCGAGGCTCTCGCACGACCAAGGG-CTAAGGTTGCCGATGGTGCCC
1 CCTAGGTTGCCGATGGTGTCCGAGGCTCCCGCACGACCAAGGGCCT-AGGTTGCCGATGGTGCCC
97491541 GAGGCTCCCGCACGACC-GAGGG
65 GAGGCTCCCGCACGACCAG-GGG
** * * * * *
97491563 CCTAGGTTATCGATGGTGCCCGAGGCTCCGGCATGTCCAAGGGCCTAGGTTGCCGATGGTGTTCC
1 CCTAGGTTGCCGATGGTGTCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTG-CCC
* **
97491628 -AGGCTCCCGCAC-ATCCAAGCA
65 GAGGCTCCCGCACGA-CCAGGGG
* * * * * *
97491649 CCAAGG-TACCGATAGTGTCCGAGGCTCCTGCCCGACCAAGGGCCTAGGTTGCCGATGTTGCCCG
1 CCTAGGTTGCCGATGGTGTCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCG
*
97491713 AGGCTCCCGCACAACCAGGGG
66 AGGCTCCCGCACGACCAGGGG
* * * *
97491734 CCTAGGTTGCAGATGGTGTCCAAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGTCTG
1 CCTAGGTTGCCGATGGTGTCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCG
* *
97491799 AGGCTTCCGCAC-ATCCAAGGG
66 AGGCTCCCGCACGA-CCAGGGG
* * * * * * ** * *
97491820 CCTAGGTTACCAATGGTGTCTGAGGCTCCCACACGGCAAAGCACCAAGG-TGCCGATGGTGCCCA
1 CCTAGGTTGCCGATGGTGTCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCG
* *
97491884 AGGCTCCCACGA-GACCAAGGG
66 AGGCTCCCGC-ACGACCAGGGG
* * * * * *
97491905 CCTAGTTTGTCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTTCCGATGGTGTCTG
1 CCTAGGTTGCCGATGGTGTCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCG
* *
97491970 AGGTTCCCGCACGACCAAGGG
66 AGGCTCCCGCACGACCAGGGG
* ** * * *
97491991 CCTAGGTTGCCGATGGTG-CTGAGGCTCTTGTACGACCAAGGGCCTAGGTTACCGATAGTGCCCG
1 CCTAGGTTGCCGATGGTGTCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCG
* *
97492055 AGGCTCCCGCATGACCAAGGG
66 AGGCTCCCGCACGACCAGGGG
* * * * ** * * *
97492076 CCTAGGTTACCGATGGTG-CCGACGCTCTCGCAC-ATCCGAGCACC-AGGGTGCTGATGGTGCGC
1 CCTAGGTTGCCGATGGTGTCCGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGCCGATGGTGCCC
* * * * *
97492138 GGGGCTCCAGCACAACCAAGAG
65 GAGGCTCCCGCACGACCAGGGG
* *
97492160 CCTAGTTTTCCGATGGTGTC
1 CCTAGGTTGCCGATGGTGTC
97492180 TGAGTCTCTT
Statistics
Matches: 3580, Mismatches: 767, Indels: 329
0.77 0.16 0.07
Matches are distributed among these distances:
73 20 0.01
74 33 0.01
75 24 0.01
76 25 0.01
77 24 0.01
78 21 0.01
79 3 0.00
80 1 0.00
81 1 0.00
82 1 0.00
83 7 0.00
84 561 0.16
85 1498 0.42
86 1170 0.33
87 184 0.05
88 7 0.00
ACGTcount: A:0.19, C:0.32, G:0.32, T:0.17
Consensus pattern (86 bp):
CCTAGGTTGCCGATGGTGTCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCG
AGGCTCCCGCACGACCAGGGG
Found at i:97490460 original size:26 final size:25
Alignment explanation
Indices: 97490423--97490473 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 25
97490413 CTGTCCGCGG
**
97490423 CTCCCGCACGACCAGGGGCCTAGGT
1 CTCCCGCACGACCAAAGGCCTAGGT
*
97490448 NCTCCCGCGCGACCAAAGGCCTAGGT
1 -CTCCCGCACGACCAAAGGCCTAGGT
97490474 ACCGATGCTG
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.18, C:0.39, G:0.29, T:0.12
Consensus pattern (25 bp):
CTCCCGCACGACCAAAGGCCTAGGT
Found at i:97490623 original size:196 final size:194
Alignment explanation
Indices: 97490254--97490643 Score: 446
Period size: 196 Copynumber: 2.0 Consensus size: 194
97490244 GTGCCCGAGG
* * * *
97490254 CTCCCGCACGACCAAGGGCCAAGGTGCCGATGGTCCCGAGGCTCTCGCACGACCAAGGACCTAGG
1 CTCCCGCACGACCAAAGGCCAAGGTACCGATGCTCCCGAGGCTCCCGCACGACCAAGGACCTAGG
** * * ** * **
97490319 GTGTCGATGGTGCCCGAGGCTCTCGCACGACCAGGGGCCTAGGTTGCCAATGGTCCCGAGGCTTT
66 GTACCGATGGTGCCCGAGGCTCCCGCACGACCAAGCACCAAGGTTGCCAATGGTCCCGAGGCTCC
* * *
97490384 CTCACGACTAGGGGCCTAGGTTACCGATGCTGTCCGCGGCTCCCGCACGACCAGGGGCCTAGGT
131 CGCACGACCAGGGGCCTAGGTTACCGATGCTGTCCGAGGCTCCCGCACGACCAGGGGCCTAGGT
* * *
97490448 NCTCCCGCGCGACCAAAGGCCTAGGTACCGATGCTGCCCGAGGCTCCCGCACGACCAAGGGCCTA
1 -CTCCCGCACGACCAAAGGCCAAGGTACCGATGCT-CCCGAGGCTCCCGCACGACCAAGGACCTA
* * * * * *
97490513 GGTTACCGATGGTGTCCGAGGCTCCCGTAC-ATCCAAGCACGAAGG-TGTCGATGGTGCCCGAGG
64 GGGTACCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGCACCAAGGTTGCCAATGGT-CCCGAGG
* **
97490576 CTCCCGCACGACCAGGGGCC-AGGGTTACCGATGGTG-CCAGAGGCTCCCTTACGACCAGGGGCC
127 CTCCCGCACGACCAGGGGCCTA-GGTTACCGATGCTGTCC-GAGGCTCCCGCACGACCAGGGGCC
97490639 TAGGT
190 TAGGT
97490644 AACTGATGGT
Statistics
Matches: 162, Mismatches: 28, Indels: 9
0.81 0.14 0.05
Matches are distributed among these distances:
195 41 0.25
196 121 0.75
ACGTcount: A:0.18, C:0.34, G:0.33, T:0.16
Consensus pattern (194 bp):
CTCCCGCACGACCAAAGGCCAAGGTACCGATGCTCCCGAGGCTCCCGCACGACCAAGGACCTAGG
GTACCGATGGTGCCCGAGGCTCCCGCACGACCAAGCACCAAGGTTGCCAATGGTCCCGAGGCTCC
CGCACGACCAGGGGCCTAGGTTACCGATGCTGTCCGAGGCTCCCGCACGACCAGGGGCCTAGGT
Found at i:97491181 original size:202 final size:202
Alignment explanation
Indices: 97490926--97491294 Score: 567
Period size: 202 Copynumber: 1.8 Consensus size: 202
97490916 GCTCCCGCAC
* * *
97490926 GACCAGGGGCCTAGGTAACCGATGGTCCCGAGGCTCTCGGACGACCAGGGGCCTAGGTTGTCGAT
1 GACCAAGGGCCTAGGTAACCGATGGTCCCGAGGCTCTCGCACGACCAGGGGCCTAGGTTGCCGAT
* * * * * * *
97490991 GGTGTCTGAGGCTCCCGCACGACCAGGGGCCTCGGTTGCCGATGGTGCCCGAGGCTCCCGCATGA
66 GCTGCCCGAGACTCCCACACGACCAGGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGA
** ** *
97491056 CCAGGGTCCTAGGTTGCCGTTGGTGTCCGAGGCTCCCACACATCCAAGCACCAAAGTGCCGATGG
131 CCAGGGGACTAGGTTGCCAATGGTGCCCGAGGCTCCCACACATCCAAGCACCAAAGTGCCGATGG
97491121 TGTCTGT
196 TGTCTGT
* * *
97491128 GACCAAGGGCCTAGGTTACCGATGGTCCCGAGGCTCTCTCACGACTAGGGGCCTAGGTTGCCGAT
1 GACCAAGGGCCTAGGTAACCGATGGTCCCGAGGCTCTCGCACGACCAGGGGCCTAGGTTGCCGAT
*
97491193 GCTGCCCGAGACTCCCACACGACCAGGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCTGCACGA
66 GCTGCCCGAGACTCCCACACGACCAGGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGA
97491258 CCAGGGGACTAGGTTGCCAATGGTGCCCGAGGCTCCC
131 CCAGGGGACTAGGTTGCCAATGGTGCCCGAGGCTCCC
97491295 GCACGGCCAG
Statistics
Matches: 148, Mismatches: 19, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
202 148 1.00
ACGTcount: A:0.17, C:0.32, G:0.34, T:0.18
Consensus pattern (202 bp):
GACCAAGGGCCTAGGTAACCGATGGTCCCGAGGCTCTCGCACGACCAGGGGCCTAGGTTGCCGAT
GCTGCCCGAGACTCCCACACGACCAGGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGA
CCAGGGGACTAGGTTGCCAATGGTGCCCGAGGCTCCCACACATCCAAGCACCAAAGTGCCGATGG
TGTCTGT
Found at i:97492702 original size:35 final size:35
Alignment explanation
Indices: 97492662--97492728 Score: 107
Period size: 35 Copynumber: 1.9 Consensus size: 35
97492652 TAGGATCGCA
*
97492662 TATCTTTGAAGATCCCCTTCCATATTTGCCAAACG
1 TATCTTTGAAGATCACCTTCCATATTTGCCAAACG
* *
97492697 TATCTTTGAAGATTACTTTCCATATTTGCCAA
1 TATCTTTGAAGATCACCTTCCATATTTGCCAA
97492729 GCTCCGGAGA
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
35 29 1.00
ACGTcount: A:0.27, C:0.24, G:0.10, T:0.39
Consensus pattern (35 bp):
TATCTTTGAAGATCACCTTCCATATTTGCCAAACG
Found at i:97505836 original size:17 final size:17
Alignment explanation
Indices: 97505814--97505846 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
97505804 CCAAAAACAC
97505814 GCTACCAGGCGACATTT
1 GCTACCAGGCGACATTT
97505831 GCTACCAGGCGACATT
1 GCTACCAGGCGACATT
97505847 CTTTTTTTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.24, C:0.30, G:0.24, T:0.21
Consensus pattern (17 bp):
GCTACCAGGCGACATTT
Found at i:97506298 original size:43 final size:43
Alignment explanation
Indices: 97506185--97507838 Score: 1521
Period size: 43 Copynumber: 38.9 Consensus size: 43
97506175 TGCACCAAGG
* * *
97506185 TGCCGATGGTGCCCTAGGCTCCCACACGACCAAGGGCTTAGG-
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT
*
97506227 TGCCGATGGT-CCCGAGGCTCTCGCACGACCAAGGGCCTAGGT
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT
* * * *
97506269 TACCGATGGTGCCCGAGGTTCCCACACGACCATGGGCCTAGGT
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT
* * * * *
97506312 CGCCGATGGTGCCTGAGTCTCCCGGACTACC-AGGGTCCTAGGT
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG-CCTAGGT
* * *
97506355 TGTCGATGGTGCCCGAGGCTCTCGCACGACCAGGGGCCTAGGT
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT
* * * *
97506398 TACCAATGGTGCCCGAGGCTCCCGCACAACCAAGGGCCTAAG-
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT
* ** *
97506440 TGCCGATAGTGCCCGAGTTTCTCGCACGACCAAGGGCCTAGGT
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT
* * * * * *
97506483 TGTCGATGGT-CTCAAGGCTCTCGCAAGACCAGGGGCCTAGGT
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT
* * * *
97506525 TGCCGGTGGTGCTCGAGGCTCCCGCACGACCAGGGGCCCAGGT
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT
* * * * *
97506568 TACCGATGGTGCTCGAGGCTCTCTCACGACCAGGGGCCTAGGT
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT
* * * ** * *
97506611 TGTCGATGTTGCCTGAGGCTCCCGCAC-ATCCAAGCACCAAAG-
1 TGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCTAGGT
* * * ** *
97506653 TGCCGATGGTGTCCGAGGCTTCCACAC-ATCCAAGCACCAAGG-
1 TGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCTAGGT
* * *
97506695 TGCCGATGATGCTCGAGGCTCCCACACGACCAAGGGCCTAGGT
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT
97506738 TGCCGATGGTG-CCGAGGCTCTCC-CACGACCAAGGGCCTAGGT
1 TGCCGATGGTGCCCGAGGCTC-CCGCACGACCAAGGGCCTAGGT
* * *
97506780 TACCGATGGTGCCCGAGGCTCCCGCACGATCGAGGGCCTAGGT
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT
*
97506823 TGCCGATGGTGCCCGAGGCTGCCGCACGACCAAGGGCCTAGGT
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT
** ** **
97506866 TGCCGATGGTGTTCGAGGCTCCCGCAC-ATCCAAGCACAAAGG-
1 TGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCTAGGT
* ** *
97506908 TGCTGATGGTATCCGAGGCTCCCACACGACCAAGGGCCTAGGT
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT
* *
97506951 TACCGATGGTGCCCGAGGCTCCCGCACGACCAGGGGCCTAGGT
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT
* ** *
97506994 TACCGATGGTGTTCGAGGCTCCCGCACGACCAAAGGCCTAGGT
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT
** * * ** * ***
97507037 TATCGATGGTGTCCGAGGCTTCCATACGTCCAAGGGAAAAGGT
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT
* *
97507080 TGCCGATGGTGTCTGAGGCTCACC-CACGACCAA--GCACTAAGG-
1 TGCCGATGGTGCCCGAGGCTC-CCGCACGACCAAGGGC-CT-AGGT
* *
97507122 TGCCGGTGGTGCCCGAGGCTCCCGCACGACCAAGAGCCTAGGT
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT
* * *
97507165 TGTCGATGGTG-CCGAGGCTCTCTCACGACCAAGGGCCTAGGT
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT
* * * *
97507207 TGACGATGGTGCTCGAGGCTCCCGCATGACCAGGGGCCTAGGT
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT
* * * ** *
97507250 TCCCGATGGTGCCCTAGGCTCCAGCACGACTGAGGGCCTATGT
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT
* * * *
97507293 TGCCGATAGTGTCCAAGGCTCCCGTACGACCAAGGGCCTAGGT
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT
* ** * ** *
97507336 TACCGATGGTGTTCGAGGCTCCCGTAC-ATCCAAGCACCAAGG-
1 TGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCTAGGT
* * *
97507378 TGCCGATGG-GTCTGAGGCTCCCACACGACCAAGGGCCTAGGT
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT
* * *
97507420 TTCCGATGGTGCCCGAGGCTCCC-CACGACC-TGAGACCTAGGT
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAG-GGCCTAGGT
** * * * * *
97507462 TGCCGATGGTGTTCGAGGCTCCTGTACGAGCAAAGGCCTAGGG
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT
* * * * * *
97507505 TACCGATGGTGTCTGAGGCTTCCGTA-TATCCAAGGGCCTAGGT
1 TGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCTAGGT
* * * * * *** *
97507548 TACCGATGGTGTCCGAAGCTCCCCCATGACCAATCACCAAGG-
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT
* * *
97507590 TGCCGATGGTGCCCGAGGCTCCGGTACGACCAAGGGCCTAGTT
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT
**
97507633 TGCCGATGGTGCCCGAGGCTCCCGC-CGACCAAGGTTCTAGGT
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT
* **
97507675 TACCGATGGTATCCGAGGCTCCCGCACGACCAAGGGCCTAGGT
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT
* * * * *
97507718 TG-CGATGGTG-TCAAGGCTCTCGCCCGATCAAGGGCCTAGGT
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT
* * * * * *
97507759 TACCAATAGTGCCCGAGGCTCCCACACGA-CAAAGACCTAGGT
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT
* ** **
97507801 TACTAATGGTGCCCGAGGCTCTAGCACGACCAAGGGCC
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCC
97507839 GAGGCTCCCG
Statistics
Matches: 1308, Mismatches: 267, Indels: 73
0.79 0.16 0.04
Matches are distributed among these distances:
41 81 0.06
42 466 0.36
43 753 0.58
44 8 0.01
ACGTcount: A:0.19, C:0.31, G:0.31, T:0.18
Consensus pattern (43 bp):
TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT
Found at i:97506521 original size:213 final size:213
Alignment explanation
Indices: 97506187--97507838 Score: 1483
Period size: 213 Copynumber: 7.8 Consensus size: 213
97506177 CACCAAGGTG
* * * * *
97506187 CCGATGGTGCCCTAGGCTCCCACACGACCAAGGGCTTAGGTGCCGATGGT-CCCGAGGCTCTCGC
1 CCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAAGTGCCGATGGTGTCCGAGGCTC-CGC
* * * * *
97506251 ACGACCAAGGGCCTAGGTTACCGATGGTGCCCGAGGTTCCCACACGACCATGGGCCTAGGTCGCC
65 ACGACCAAGGGCCTAGGTTGCCGATGGTGCTCGAGGCTCCCACACGACCAAGGGCCTAGGTTGCC
* * * ** *
97506316 GATGGTGCCTGAGTCTCCCGGACTACC-AGGGTCCTAGGTTGTCGATGGTGCCCGAGGCTCTCGC
130 GATGGTGCCTGAGGCTCCCGCACGACCAAGGG-CCTAGGTTACCGATGGTGCCCGAGGCTCCCGC
97506380 ACGACCAGGGGCCTAGGTTA
194 ACGACCAGGGGCCTAGGTTA
* * * * **
97506400 CCAATGGTGCCCGAGGCTCCCGCACAACCAAGGGCCTAAGTGCCGATAGTGCCCGAGTTTCTCGC
1 CCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAAGTGCCGATGGTGTCCGAGGCTC-CGC
* * * * * *
97506465 ACGACCAAGGGCCTAGGTTGTCGATGGT-CTCAAGGCTCTCGCAAGACCAGGGGCCTAGGTTGCC
65 ACGACCAAGGGCCTAGGTTGCCGATGGTGCTCGAGGCTCCCACACGACCAAGGGCCTAGGTTGCC
* * * * * *
97506529 GGTGGTG-CTCGAGGCTCCCGCACGACCAGGGGCCCAGGTTACCGATGGTGCTCGAGGCTCTCTC
130 GATGGTGCCT-GAGGCTCCCGCACGACCAAGGGCCTAGGTTACCGATGGTGCCCGAGGCTCCCGC
*
97506593 ACGACCAGGGGCCTAGGTTG
194 ACGACCAGGGGCCTAGGTTA
* * * ** * *
97506613 TCGATGTTGCCTGAGGCTCCCGCAC-ATCCAAGCACCAAAGTGCCGATGGTGTCCGAGGCTTCCA
1 CCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCTAAGTGCCGATGGTGTCCGAGGC-TCCG
** * *
97506677 CAC-ATCCAAGCACCAAGG-TGCCGATGATGCTCGAGGCTCCCACACGACCAAGGGCCTAGGTTG
64 CACGA-CCAAGGGCCTAGGTTGCCGATGGTGCTCGAGGCTCCCACACGACCAAGGGCCTAGGTTG
97506740 CCGATGGTGCC-GAGGCTCTCC-CACGACCAAGGGCCTAGGTTACCGATGGTGCCCGAGGCTCCC
128 CCGATGGTGCCTGAGGCTC-CCGCACGACCAAGGGCCTAGGTTACCGATGGTGCCCGAGGCTCCC
* *
97506803 GCACGATC-GAGGGCCTAGGTTG
192 GCACGACCAG-GGGCCTAGGTTA
* * *
97506825 CCGATGGTGCCCGAGGCTGCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGTTCGAGGCTCCCG
1 CCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAAG-TGCCGATGGTGTCCGAGGCT-CCG
** ** * *
97506890 CAC-ATCCAAGCACAAAGG-TGCTGATGGT-ATCCGAGGCTCCCACACGACCAAGGGCCTAGGTT
64 CACGA-CCAAGGGCCTAGGTTGCCGATGGTGCT-CGAGGCTCCCACACGACCAAGGGCCTAGGTT
* * * **
97506952 ACCGATGGTGCCCGAGGCTCCCGCACGACCAGGGGCCTAGGTTACCGATGGTGTTCGAGGCTCCC
127 GCCGATGGTGCCTGAGGCTCCCGCACGACCAAGGGCCTAGGTTACCGATGGTGCCCGAGGCTCCC
**
97507017 GCACGACCAAAGGCCTAGGTTA
192 GCACGACCAGGGGCCTAGGTTA
* * * ** * ** *
97507039 TCGATGGTGTCCGAGGCTTCCATACGTCCAAGGG-AAAAGGTTGCCGATGGTGTCTGAGGCTCAC
1 CCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAA-G-TGCCGATGGTGTCCGAGGCTC-C
* * * * *
97507103 CCACGACCAA--GCACTAAGG-TGCCGGTGGTGCCCGAGGCTCCCGCACGACCAAGAGCCTAGGT
63 GCACGACCAAGGGC-CT-AGGTTGCCGATGGTGCTCGAGGCTCCCACACGACCAAGGGCCTAGGT
* * * *
97507165 TGTCGATGGTGCC-GAGGCTCTCTCACGACCAAGGGCCTAGGTTGA-CGATGGTGCTCGAGGCTC
126 TGCCGATGGTGCCTGAGGCTCCCGCACGACCAAGGGCCTAGGTT-ACCGATGGTGCCCGAGGCTC
* *
97507228 CCGCATGACCAGGGGCCTAGGTTC
190 CCGCACGACCAGGGGCCTAGGTTA
* * ** * * *
97507252 CCGATGGTGCCCTAGGCTCCAGCACGACTGAGGGCCTATGTTGCCGATAGTGTCCAAGGCTCCCG
1 CCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAAG-TGCCGATGGTGTCCGAGGCT-CCG
* * * ** ** *
97507317 TACGACCAAGGGCCTAGGTTACCGATGGTGTTCGAGGCTCCCGTAC-ATCCAAGCACCAAGG-TG
64 CACGACCAAGGGCCTAGGTTGCCGATGGTGCTCGAGGCTCCCACACGA-CCAAGGGCCTAGGTTG
* * *
97507380 CCGATGG-GTCTGAGGCTCCCACACGACCAAGGGCCTAGGTTTCCGATGGTGCCCGAGGCTCCC-
128 CCGATGGTGCCTGAGGCTCCCGCACGACCAAGGGCCTAGGTTACCGATGGTGCCCGAGGCTCCCG
* * * *
97507443 CACGACCTGAGACCTAGGTTG
193 CACGACCAGGGGCCTAGGTTA
** * * * * * * *
97507464 CCGATGGTGTTCGAGGCTCCTGTACGAGCAAAGGCCTAGGGTACCGATGGTGTCTGAGGCTTCCG
1 CCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTA-AGTGCCGATGGTGTCCGAGGC-TCCG
* * * * * * *** *
97507529 TA-TATCCAAGGGCCTAGGTTACCGATGGTG-TCCGAAGCTCCCCCATGACCAATCACCAAGG-T
64 CACGA-CCAAGGGCCTAGGTTGCCGATGGTGCT-CGAGGCTCCCACACGACCAAGGGCCTAGGTT
* * * * *
97507591 GCCGATGGTGCCCGAGGCTCCGGTACGACCAAGGGCCTAGTTTGCCGATGGTGCCCGAGGCTCCC
127 GCCGATGGTGCCTGAGGCTCCCGCACGACCAAGGGCCTAGGTTACCGATGGTGCCCGAGGCTCCC
* **
97507656 GC-CGACCAAGGTTCTAGGTTA
192 GCACGACCAGGGGCCTAGGTTA
** * *
97507677 CCGATGGTATCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTG-CGATGGTGT-CAAGGCTCTCG
1 CCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAAG-TGCCGATGGTGTCCGAGGCTC-CG
* * * * * * * * *
97507740 CCCGATCAAGGGCCTAGGTTACCAATAGTGCCCGAGGCTCCCACACGA-CAAAGACCTAGGTTAC
64 CACGACCAAGGGCCTAGGTTGCCGATGGTGCTCGAGGCTCCCACACGACCAAGGGCCTAGGTTGC
** * **
97507804 TAATGGTGCCCGAGGCTCTAGCACGACCAAGGGCC
129 CGATGGTGCCTGAGGCTCCCGCACGACCAAGGGCC
97507839 GAGGCTCCCG
Statistics
Matches: 1185, Mismatches: 210, Indels: 90
0.80 0.14 0.06
Matches are distributed among these distances:
210 11 0.01
211 76 0.06
212 243 0.21
213 601 0.51
214 251 0.21
215 3 0.00
ACGTcount: A:0.19, C:0.31, G:0.31, T:0.18
Consensus pattern (213 bp):
CCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAAGTGCCGATGGTGTCCGAGGCTCCGCA
CGACCAAGGGCCTAGGTTGCCGATGGTGCTCGAGGCTCCCACACGACCAAGGGCCTAGGTTGCCG
ATGGTGCCTGAGGCTCCCGCACGACCAAGGGCCTAGGTTACCGATGGTGCCCGAGGCTCCCGCAC
GACCAGGGGCCTAGGTTA
Found at i:97506576 original size:256 final size:256
Alignment explanation
Indices: 97506185--97508066 Score: 1403
Period size: 255 Copynumber: 7.4 Consensus size: 256
97506175 TGCACCAAGG
* * *
97506185 TGCCGATGGTGCCCTAGGCTCCCACACGACCAAGGGCTTAGG-TGCCGATGGT-CCCGAGGCTCT
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCT
* * * * *
97506248 CGCACGACCAAGGGCCTAGGTTACCGATGGTGCCCGAGGTTCCCACACGACCATGGGCCTAGGTC
66 CGCACGACCAAGGGCCTAGGTTACCGATGGTGCTCGAGGCTCCCGCACGACCAAGGGCCTAGGTT
* * * * *
97506313 GCCGATGGTGCCTGAGTCTCCCGGACTACCAGGGTCCTAGGTTGTCGATGGTGCCCGAGGCTCTC
131 GCCGATGGTG-CTGAGGCTCCCGCACGACCAGGG-CCTAGGTTGCCGATGGTGCCCGAGGCTCCC
* * * * *
97506378 GCACGACCAGGGGCCTAGGTTACCAATGGTGCCCGAGGCTCCCGCACAACCAAGGGCCTAAG-
194 GCACGACCAAGCGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCACACAACCAAGGGCCTAAGT
* ** * * * *
97506440 TGCCGATAGTGCCCGAGTTTCTCGCACGACCAAGGGCCTAGGTTGTCGATGGT-CTCAAGGCTCT
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCT
* * * * * *
97506504 CGCAAGACCAGGGGCCTAGGTTGCCGGTGGTGCTCGAGGCTCCCGCACGACCAGGGGCCCAGGTT
66 CGCACGACCAAGGGCCTAGGTTACCGATGGTGCTCGAGGCTCCCGCACGACCAAGGGCCTAGGTT
* * * * * *
97506569 ACCGATGGTGCTCGAGGCTCTCTCACGACCAGGGGCCTAGGTTGTCGATGTTGCCTGAGGCTCCC
131 GCCGATGGTGCT-GAGGCTCCCGCACGACCA-GGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCC
* * * * * * ** *
97506634 GCAC-ATCCAAGCACCAAAG-TGCCGATGGTGTCCGAGGCTTCCACACATCCAAGCACC-AAGG
194 GCACGA-CCAAGCGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCACACAACCAAGGGCCTAAGT
* * *
97506695 TGCCGATGATGCTCGAGGCTCCCACACGACCAAGGGCCTAGGTTGCCGATGGTG-CCGAGGCTCT
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCT
* * * *
97506759 CCCACGACCAAGGGCCTAGGTTACCGATGGTGCCCGAGGCTCCCGCACGATCGAGGGCCTAGGTT
66 CGCACGACCAAGGGCCTAGGTTACCGATGGTGCTCGAGGCTCCCGCACGACCAAGGGCCTAGGTT
* * **
97506824 GCCGATGGTGCCCGAGGCTGCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGTTCGAGGCTCCC
131 GCCGATGGTG-CTGAGGCTCCCGCACGACC-AGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCC
* ** * ** * *
97506889 GCAC-ATCCAAGCACAAAGG-TGCTGATGGTATCCGAGGCTCCCACACGACCAAGGGCCTAGGT
194 GCACGA-CCAAGCGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCACACAACCAAGGGCCTAAGT
* * * ** *
97506951 TACCGATGGTGCCCGAGGCTCCCGCACGACCAGGGGCCTAGGTTACCGATGGTGTTCGAGGCTCC
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCT
* * * ** * ***
97507016 CGCACGACCAAAGGCCTAGGTTATCGATGGTG-TCCGAGGCTTCCATACGTCCAAGGGAAAAGGT
66 CGCACGACCAAGGGCCTAGGTTACCGATGGTGCT-CGAGGCTCCCGCACGACCAAGGGCCTAGGT
* *
97507080 TGCCGATGGTGTCTGAGGCTCACC-CACGACCA-AGCACTAAGG-TGCCGGTGGTGCCCGAGGCT
130 TGCCGATGGTG-CTGAGGCTC-CCGCACGACCAGGGC-CT-AGGTTGCCGATGGTGCCCGAGGCT
* * * * * *
97507142 CCCGCACGACCAAGAGCCTAGGTTGTCGATGGTG-CCGAGGCTCTCTCACGACCAAGGGCCTAGG
191 CCCGCACGACCAAGCGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCACACAACCAAGGGCCTAAG
97507206 T
256 T
* * * * * *
97507207 TGACGATGGTGCTCGAGGCTCCCGCATGACCAGGGGCCTAGGTTCCCGATGGTGCCCTAGGCTC-
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCT
** * * * * *
97507271 CAGCACGACTGAGGGCCTATGTTGCCGATAGTG-TCCAAGGCTCCCGTACGACCAAGGGCCTAGG
66 C-GCACGACCAAGGGCCTAGGTTACCGATGGTGCT-CGAGGCTCCCGCACGACCAAGGGCCTAGG
* * * ** * * *
97507335 TTACCGATGGTGTTCGAGGCTCCCGTAC-ATCCAAGCACCAAGG-TGCCGATGG-GTCTGAGGCT
129 TTGCCGATGGTGCT-GAGGCTCCCGCACGA-CC-AGGGCCTAGGTTGCCGATGGTGCCCGAGGCT
* * * * * * *
97507397 CCCACACGACCAAGGGCCTAGGTTTCCGATGGTGCCCGAGGCTCCC-CACGACC-TGAGACCTAG
191 CCCGCACGACCAAGCGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCACACAACCAAG-GGCCTAA
97507460 GT
255 GT
** * * * * * * * *
97507462 TGCCGATGGTGTTCGAGGCTCCTGTACGAGCAAAGGCCTAGGGTACCGATGGTGTCTGAGGCT-T
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCT
* * * * * *** *
97507526 CCGTA-TATCCAAGGGCCTAGGTTACCGATGGTG-TCCGAAGCTCCCCCATGACCAATCACCAAG
66 -CGCACGA-CCAAGGGCCTAGGTTACCGATGGTGCT-CGAGGCTCCCGCACGACCAAGGGCCTAG
* * * *
97507589 G-TGCCGATGGTGCCCGAGGCTCCGGTACGACCAAGGGCCTAGTTTGCCGATGGTGCCCGAGGCT
128 GTTGCCGATGGTG-CTGAGGCTCCCGCACGACC-AGGGCCTAGGTTGCCGATGGTGCCCGAGGCT
* * ** * * *
97507653 CCCGC-CGACCAAG-GTTCTAGGTTACCGATGGTATCCGAGGCTCCCGCACGACCAAGGGCCTAG
191 CCCGCACGACCAAGCG-CCTAGGTTGCCGATGGTGCCCGAGGCTCCCACACAACCAAGGGCCTAA
97507716 GT
255 GT
* * * * * * * * *
97507718 TG-CGATGGTG-TCAAGGCTCTCGCCCGATCAAGGGCCTAGGTTACCAATAGTGCCCGAGGCTCC
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCT
* * * ** * ** * *
97507781 CACACGA-CAAAGACCTAGGTTACTAATGGTGCCCGAGGCTCTAGCACGACCAAGGGCCGAGGCT
66 CGCACGACCAAGGGCCTAGGTTACCGATGGTGCTCGAGGCTCCCGCACGACCAAGGGCCTAGGTT
* * ** ** * ** * *
97507845 CCCGCA-CGACCTGAGGCTCTTGCAC-ATCTAAGCACCAAGG-TGCCGATGGTGCCTGAGGCTCC
131 GCCG-ATGGTGCTGAGGCTCCCGCACGA-C-CAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCC
* * * * ** * ** * *
97507907 CGCAC-ATTCGAGCACCAAGG-TGCTAATGGTGCACGAGGCTCCTGCATAACCAAGAGCCT-AGT
193 CGCACGA-CCAAGCGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCACACAACCAAGGGCCTAAG-
97507969 T
256 T
** * * * * *
97507970 TGCCGATGGTTTCCGAGGCTCCCGCAC-ATCCAAGGCACCAAGG-TGCCGATGCTACTCGAGGCT
1 TGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGG-GCCTAGGTTGCCGATGGTGCCCGAGGCT
* * ** * *
97508033 CTCACACCACTGACGTCCTAGGTTACCGATGGTG
64 CTCGCACGACCAAGGGCCTAGGTTACCGATGGTG
97508067 TCCAAGGCTC
Statistics
Matches: 1291, Mismatches: 286, Indels: 100
0.77 0.17 0.06
Matches are distributed among these distances:
251 1 0.00
252 58 0.04
253 74 0.06
254 120 0.09
255 506 0.39
256 428 0.33
257 101 0.08
258 3 0.00
ACGTcount: A:0.20, C:0.31, G:0.31, T:0.18
Consensus pattern (256 bp):
TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCT
CGCACGACCAAGGGCCTAGGTTACCGATGGTGCTCGAGGCTCCCGCACGACCAAGGGCCTAGGTT
GCCGATGGTGCTGAGGCTCCCGCACGACCAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGC
ACGACCAAGCGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCACACAACCAAGGGCCTAAGT
Found at i:97506657 original size:128 final size:129
Alignment explanation
Indices: 97506187--97507781 Score: 925
Period size: 128 Copynumber: 12.5 Consensus size: 129
97506177 CACCAAGGTG
* * * * *
97506187 CCGATGGTGCCCTAGGCTCCCACACGACCAAGGGCTTAGG-TGCCGATGGT-CCCGAGGCTCTCG
1 CCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCTCGAGGCTCCCG
** * * * * * *
97506250 CACGA-CCAAGGGCCTAGGTTACCGATGGTGC-CCGAGGTTCCCACACGACCATGGGCCTAGGTC
66 CAC-ATCCAAGCACCAAAG-TGCCGATGGTGCTCCGAGGCTCCCACACGACCAAGGGCCTAGGTT
*
97506313 G
129 A
* * * * * * *
97506314 CCGATGGTGCCTGAGTCTCCCGGACTACC-AGGGTCCTAGGTTGTCGATGGTGCCCGAGGCTCTC
1 CCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG-CCTAGGTTGCCGATGGTGCTCGAGGCTCCC
* ** * * * * * * *
97506378 GCACGA-CCAGGGGCCTAGGTTACCAATGGTGC-CCGAGGCTCCCGCACAACCAAGGGCCTAAG-
65 GCAC-ATCCAAGCACCAAAG-TGCCGATGGTGCTCCGAGGCTCCCACACGACCAAGGGCCTAGGT
*
97506440 TG
128 TA
* ** * * * *
97506442 CCGATAGTGCCCGAGTTTCTCGCACGACCAAGGGCCTAGGTTGTCGATGGT-CTCAAGGCTCTCG
1 CCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCTCGAGGCTCCCG
* * ** * * * * * *
97506506 CA-AGACCAGGGGCCTAGGTTGCCGGTGGTGCT-CGAGGCTCCCGCACGACCAGGGGCCCAGGTT
66 CACA-TCCAAGCACCAAAG-TGCCGATGGTGCTCCGAGGCTCCCACACGACCAAGGGCCTAGGTT
97506569 A
129 A
* * * * * *
97506570 CCGATGGTGCTCGAGGCTCTCTCACGACCAGGGGCCTAGGTTGTCGATGTTGC-CTGAGGCTCCC
1 CCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCTC-GAGGCTCCC
* ** *
97506634 GCACATCCAAGCACCAAAGTGCCGATGGTG-TCCGAGGCTTCCACAC-ATCCAAGCACCAAGG-T
65 GCACATCCAAGCACCAAAGTGCCGATGGTGCTCCGAGGCTCCCACACGA-CCAAGGGCCTAGGTT
*
97506696 G
129 A
* * *
97506697 CCGATGATGCTCGAGGCTCCCACACGACCAAGGGCCTAGGTTGCCGATGGTGC-CGAGGCTCTCC
1 CCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCTCGAGGCTC-CC
** * * * * * *
97506761 -CACGA-CCAAGGGCCTAGGTTACCGATGGTGC-CCGAGGCTCCCGCACGATCGAGGGCCTAGGT
65 GCAC-ATCCAAGCACCAAAG-TGCCGATGGTGCTCCGAGGCTCCCACACGACCAAGGGCCTAGGT
*
97506823 TG
128 TA
* *
97506825 CCGATGGTGCCCGAGGCTGCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGTTCGAGGCTCCCG
1 CCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCTCGAGGCTCCCG
* *
97506890 CACATCCAAGCA-CAAAGGTGCTGATGGT-ATCCGAGGCTCCCACACGACCAAGGGCCTAGGTTA
66 CACATCCAAGCACCAAA-GTGCCGATGGTGCTCCGAGGCTCCCACACGACCAAGGGCCTAGGTTA
* * *
97506953 CCGATGGTGCCCGAGGCTCCCGCACGACCAGGGGCCTAGGTTACCGATGGTGTTCGAGGCTCCCG
1 CCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCTCGAGGCTCCCG
* * * ** * * * ***
97507018 CACGA-CCAAAG-GCCTAGGTTATCGATGGTG-TCCGAGGCTTCCATACGTCCAAGGGAAAAGGT
66 CAC-ATCC-AAGCACCAAAG-TGCCGATGGTGCTCCGAGGCTCCCACACGACCAAGGGCCTAGGT
*
97507080 TG
128 TA
* * * *
97507082 CCGATGGTGTCTGAGGCTCACC-CACGACCAA--GCACTAAGG-TGCCGGTGGTGCCCGAGGCTC
1 CCGATGGTGCCCGAGGCTC-CCGCACGACCAAGGGC-CT-AGGTTGCCGATGGTGCTCGAGGCTC
* * * * *
97507143 CCGCACGA-CCAAG-AGCCTAGGTTGTCGATGGTG--CCGAGGCTCTCTCACGACCAAGGGCCTA
63 CCGCAC-ATCCAAGCA-CCAAAG-TGCCGATGGTGCTCCGAGGCTCCCACACGACCAAGGGCCTA
97507204 GGTTGA
125 GGTT-A
* * * * * * *
97507210 -CGATGGTGCTCGAGGCTCCCGCATGACCAGGGGCCTAGGTTCCCGATGGTGCCCTAGGCTCCAG
1 CCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCTCGAGGCTCCCG
** ** * * * * **
97507274 CACGA-CTGAGGGCCTATGTTGCCGATAGTG-TCCAAGGCTCCCGTACGACCAAGGGCCTAGGTT
66 CAC-ATCCAAGCACCAAAG-TGCCGATGGTGCTCCGAGGCTCCCACACGACCAAGGGCCTAGGTT
97507337 A
129 A
** * ** *
97507338 CCGATGGTGTTCGAGGCTCCCGTAC-ATCCAAGCACCAAGG-TGCCGATGG-G-TCTGAGGCTCC
1 CCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGCCGATGGTGCTC-GAGGCTCC
* ** * * * * *
97507399 CACACGA-CCAAGGGCCTAGGTTTCCGATGGTGC-CCGAGGCTCCC-CACGACC-TGAGACCTAG
64 CGCAC-ATCCAAGCACCAAAG-TGCCGATGGTGCTCCGAGGCTCCCACACGACCAAG-GGCCTAG
*
97507460 GTTG
126 GTTA
** * * * * * * *
97507464 CCGATGGTGTTCGAGGCTCCTGTACGAGCAAAGGCCTAGGGTACCGATGGTG-TCTGAGGCTTCC
1 CCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCTC-GAGGCTCCC
* * ** * * * * * * *** *
97507528 GTATATCCAAGGGCCTAGGTTACCGATGGTG-TCCGAAGCTCCCCCATGACCAATCACCAAGG-T
65 GCACATCCAAGCACCAAAG-TGCCGATGGTGCTCCGAGGCTCCCACACGACCAAGGGCCTAGGTT
*
97507591 G
129 A
* * * *
97507592 CCGATGGTGCCCGAGGCTCCGGTACGACCAAGGGCCTAGTTTGCCGATGGTGCCCGAGGCTCCCG
1 CCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCTCGAGGCTCCCG
*** * * * * *
97507657 C-CGA-CCAAGGTTCTAGGTTACCGATGGT-ATCCGAGGCTCCCGCACGACCAAGGGCCTAGGTT
66 CAC-ATCCAAGCACCAAAG-TGCCGATGGTGCTCCGAGGCTCCCACACGACCAAGGGCCTAGGTT
97507719 -
129 A
* * * * * * * * * *
97507719 GCGATGGTG-TCAAGGCTCTCGCCCGATCAAGGGCCTAGGTTACCAATAGTGCCCGAGGCTCCC
1 CCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCTCGAGGCTCCC
97507782 ACACGACAAA
Statistics
Matches: 1197, Mismatches: 215, Indels: 113
0.78 0.14 0.07
Matches are distributed among these distances:
125 2 0.00
126 116 0.10
127 335 0.28
128 493 0.41
129 248 0.21
130 3 0.00
ACGTcount: A:0.19, C:0.31, G:0.31, T:0.18
Consensus pattern (129 bp):
CCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCTCGAGGCTCCCG
CACATCCAAGCACCAAAGTGCCGATGGTGCTCCGAGGCTCCCACACGACCAAGGGCCTAGGTTA
Found at i:97507543 original size:682 final size:678
Alignment explanation
Indices: 97506224--97507781 Score: 1869
Period size: 682 Copynumber: 2.3 Consensus size: 678
97506214 CCAAGGGCTT
* *
97506224 AGGTGCCGATGGTCCCGAGGCTCTCGCACGACCAAGGGCCTAGGTTACCGATGGTGCCCGAGGTT
1 AGGTGCCGATGGTCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTACCGATGGTGCCCGAGGCT
* * ** * * *
97506289 CCCACACGACCATGGGCCTAGGTCGCCGATGGTG-CCTGAGTCTCCCGGACTACC-AGGGTCCTA
66 CCCGCACGACCAAGGGCCTAGGTTACCGATGGTGTCC-GAGGCTCCCGCACGACCAAGGG-CCTA
* * ***
97506352 GGTTGTCGATGGTGCCCGAGGCTCTCGCACGACCAGGGGCCTAGGTTACCAATGGTGCCCGAGGC
129 GGTT-TCGATGGTGTCCGAGGCTCTCGCACGACCAAGGGAAAAGGTTACCAATGGTGCCCGAGGC
** * *
97506417 TCCCGCACAACCAAGGGCCTAAGTGCCGATAGTGCCCGAGTTTCTCGCACGACCAAGGGCCTAGG
193 TCCCGCACAACCAA-GGCCTAAGTGCCGATAGTGCCCGAGGCTCCCGCACGACCAAGAGCCTAGG
* * *
97506482 TTGTCGATGGTCTCAAGGCTCTCGCAAGACCAGGGGCCTAGGTTGCCGGTGGTGCTCGAGGCTCC
257 TTGTCGATGGTCTCAAGGCTCTCGCAAGACCAAGGGCCTAGGTTGACGATGGTGCTCGAGGCTCC
* *
97506547 CGCACGACCAGGGGCCCAGGTTACCGATGGTGCTCGAGGCTCTCTCACGACCAGGGGCCTAGGTT
322 CGCACGACCAGGGGCCCAGGTTACCGATGGTGCCCGAGGCTCTCGCACGACCAGGGGCCTAGGTT
* * * *
97506612 GTCGATGTTGCCTGAGGCTCCCGCACATCCAAGCACCAAAGTGCCGATGGTGTCCGAGGCTTCCA
387 GCCGATGTTGCCTAAGGCTCCCGCACATCCAAGCACCAAAGTACCGATGGTGTCCGAGGCTCCCA
97506677 CACATCCAAGCACCAAGGTGCCGATGATGCTCGAGGCTCCCACACGACCAAGGGCCTAGGTTGCC
452 CACATCCAAGCACCAAGGTGCCGATGATGCTCGAGGCTCCCACACGACCAAGGGCCTAGGTTGCC
*
97506742 GATGGTGCCGAGGCTCTCCCACGACCAAGGGCCTAGGTTACCGATGGTGCCCGAGGCTCCCGCAC
517 GATGGTGCCGAGGCTCTCCCACGACCAAGGACCTAGGTTACCGATGGTGCCCGAGGCTCCCGCAC
* * * * * *
97506807 GATCGAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTGCCGCACGACCAAGGGCCTAGGTTGCCGA
582 GAGCAAAGGCCTAGGGTACCGATGGTGCCCGAGGCTGCCGCACGACCAAGGGCCTAGGTTACCGA
* *
97506872 TGGTGTTCGAGGCTCCCGCACAT-CCAAGCACAA
647 TGGTGTCCGAAGCTCCC-C-CATACCAAGCACAA
* * *
97506905 AGGTGCTGATGGTATCCGAGGCTCCCACACGACCAAGGGCCTAGGTTACCGATGGTGCCCGAGGC
1 AGGTGCCGATGGT-CCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTACCGATGGTGCCCGAGGC
* * *
97506970 TCCCGCACGACCAGGGGCCTAGGTTACCGATGGTGTTCGAGGCTCCCGCACGACCAAAGGCCTAG
65 TCCCGCACGACCAAGGGCCTAGGTTACCGATGGTGTCCGAGGCTCCCGCACGACCAAGGGCCTAG
* * * * *
97507035 GTTATCGATGGTGTCCGAGGCT-TC-CATACGTCCAAGGGAAAAGGTTGCCGATGGTGTCTGAGG
130 GTT-TCGATGGTGTCCGAGGCTCTCGC--ACGACCAAGGGAAAAGGTTACCAATGGTGCCCGAGG
* * *
97507098 CTCACC-CACGACCAA-GCACTAAGGTGCCGGTGGTGCCCGAGGCTCCCGCACGACCAAGAGCCT
192 CTC-CCGCACAACCAAGGC-CTAA-GTGCCGATAGTGCCCGAGGCTCCCGCACGACCAAGAGCCT
* * *
97507161 AGGTTGTCGATGGTGC-CGAGGCTCTCTCACGACCAAGGGCCTAGGTTGACGATGGTGCTCGAGG
254 AGGTTGTCGATGGT-CTCAAGGCTCTCGCAAGACCAAGGGCCTAGGTTGACGATGGTGCTCGAGG
* * * * *
97507225 CTCCCGCATGACCAGGGGCCTAGGTTCCCGATGGTGCCCTAGGCTC-CAGCACGA-CTGAGGGCC
318 CTCCCGCACGACCAGGGGCCCAGGTTACCGATGGTGCCCGAGGCTCTC-GCACGACCAG-GGGCC
* * ** * * *
97507288 TATGTTGCCGATAG-TGTCC-AAGGCTCCCGTACGA-CCAAGGGCCTAGGTTACCGATGGTGTTC
381 TAGGTTGCCGAT-GTTG-CCTAAGGCTCCCGCAC-ATCCAAGCACCAAAG-TACCGATGGTGTCC
** *
97507350 GAGGCTCCCGTACATCCAAGCACCAAGGTGCCGATG--GGTCTGAGGCTCCCACACGACCAAGGG
442 GAGGCTCCCACACATCCAAGCACCAAGGTGCCGATGATGCTC-GAGGCTCCCACACGACCAAGGG
* * * **
97507413 CCTAGGTTTCCGATGGTGCCCGAGGCTC-CCCACGACC-TGAGACCTAGGTTGCCGATGGTGTTC
506 CCTAGGTTGCCGATGGTG-CCGAGGCTCTCCCACGACCAAG-GACCTAGGTTACCGATGGTGCCC
* * * * * * *
97507476 GAGGCTCCTGTACGAGCAAAGGCCTAGGGTACCGATGGTGTCTGAGGCTTCCGTA-TATCCAAGG
569 GAGGCTCCCGCACGAGCAAAGGCCTAGGGTACCGATGGTGCCCGAGGCTGCCGCACGA-CCAAGG
* *
97507540 GCCTAGGTTACCGATGGTGTCCGAAGCTCCCCCATGACCAATCACCA
633 GCCTAGGTTACCGATGGTGTCCGAAGCTCCCCCAT-ACCAAGCACAA
* * * *
97507587 AGGTGCCGATGGTGCCCGAGGCTCCGGTACGACCAAGGGCCTAGTTTGCCGATGGTGCCCGAGGC
1 AGGTGCCGATGGT-CCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTACCGATGGTGCCCGAGGC
** *
97507652 TCCCGC-CGACCAAGGTTCTAGGTTACCGATGGTATCCGAGGCTCCCGCACGACCAAGGGCCTAG
65 TCCCGCACGACCAAGGGCCTAGGTTACCGATGGTGTCCGAGGCTCCCGCACGACCAAGGGCCTAG
* * * * *** *
97507716 GTTGCGATGGTGT-CAAGGCTCTCGCCCGATCAAGGGCCTAGGTTACCAATAGTGCCCGAGGCTC
130 GTTTCGATGGTGTCCGAGGCTCTCGCACGACCAAGGGAAAAGGTTACCAATGGTGCCCGAGGCTC
97507780 CC
195 CC
97507782 ACACGACAAA
Statistics
Matches: 745, Mismatches: 109, Indels: 49
0.83 0.12 0.05
Matches are distributed among these distances:
678 2 0.00
679 34 0.05
680 17 0.02
681 83 0.11
682 544 0.73
683 65 0.09
ACGTcount: A:0.19, C:0.31, G:0.32, T:0.18
Consensus pattern (678 bp):
AGGTGCCGATGGTCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTACCGATGGTGCCCGAGGCT
CCCGCACGACCAAGGGCCTAGGTTACCGATGGTGTCCGAGGCTCCCGCACGACCAAGGGCCTAGG
TTTCGATGGTGTCCGAGGCTCTCGCACGACCAAGGGAAAAGGTTACCAATGGTGCCCGAGGCTCC
CGCACAACCAAGGCCTAAGTGCCGATAGTGCCCGAGGCTCCCGCACGACCAAGAGCCTAGGTTGT
CGATGGTCTCAAGGCTCTCGCAAGACCAAGGGCCTAGGTTGACGATGGTGCTCGAGGCTCCCGCA
CGACCAGGGGCCCAGGTTACCGATGGTGCCCGAGGCTCTCGCACGACCAGGGGCCTAGGTTGCCG
ATGTTGCCTAAGGCTCCCGCACATCCAAGCACCAAAGTACCGATGGTGTCCGAGGCTCCCACACA
TCCAAGCACCAAGGTGCCGATGATGCTCGAGGCTCCCACACGACCAAGGGCCTAGGTTGCCGATG
GTGCCGAGGCTCTCCCACGACCAAGGACCTAGGTTACCGATGGTGCCCGAGGCTCCCGCACGAGC
AAAGGCCTAGGGTACCGATGGTGCCCGAGGCTGCCGCACGACCAAGGGCCTAGGTTACCGATGGT
GTCCGAAGCTCCCCCATACCAAGCACAA
Found at i:97507810 original size:84 final size:85
Alignment explanation
Indices: 97507638--97507838 Score: 201
Period size: 84 Copynumber: 2.4 Consensus size: 85
97507628 TAGTTTGCCG
* ** ** * * * *
97507638 ATGGTGCCCGAGGCTCCCGC-CGACCAAGGTTCTAGGTTACCGATGGTATCCGAGGCTCCCGCAC
1 ATGGTGCCCAAGGCTCTAGCACGACCAAGGGCCTAGGTTACCAATAGTACCCGAGGCTCCCACAC
* * * *
97507702 GACCAAGGGCCTAGGTTGCG
66 GACCAAAGACCTAGGTTACA
* * * * *
97507722 ATGGTG-TCAAGGCTCTCGCCCGATCAAGGGCCTAGGTTACCAATAGTGCCCGAGGCTCCCACAC
1 ATGGTGCCCAAGGCTCTAGCACGACCAAGGGCCTAGGTTACCAATAGTACCCGAGGCTCCCACAC
97507786 GA-CAAAGACCTAGGTTACTA
66 GACCAAAGACCTAGGTTAC-A
*
97507806 ATGGTGCCCGAGGCTCTAGCACGACCAAGGGCC
1 ATGGTGCCCAAGGCTCTAGCACGACCAAGGGCC
97507839 GAGGCTCCCG
Statistics
Matches: 94, Mismatches: 20, Indels: 5
0.79 0.17 0.04
Matches are distributed among these distances:
83 23 0.24
84 50 0.53
85 21 0.22
ACGTcount: A:0.22, C:0.31, G:0.29, T:0.17
Consensus pattern (85 bp):
ATGGTGCCCAAGGCTCTAGCACGACCAAGGGCCTAGGTTACCAATAGTACCCGAGGCTCCCACAC
GACCAAAGACCTAGGTTACA
Found at i:97507900 original size:42 final size:41
Alignment explanation
Indices: 97507857--97508020 Score: 150
Period size: 42 Copynumber: 3.9 Consensus size: 41
97507847 CGCACGACCT
** *
97507857 GAGGCTCTTGCACATCTAAGCACCAAGGTGCCGATGGTGCC
1 GAGGCTCCCGCACATCCAAGCACCAAGGTGCCGATGGTGCC
* * **
97507898 TGAGGCTCCCGCACATTCGAGCACCAAGGTGCTAATGGTGCAC
1 -GAGGCTCCCGCACATCCAAGCACCAAGGTGCCGATGGTGC-C
* * * * * *
97507941 GAGGCTCCTGCATAACCAAG-AGCCTAGTTTGCCGATGGTTTCC
1 GAGGCTCCCGCACATCCAAGCA-CCAAG-GTGCCGATGG-TGCC
97507984 GAGGCTCCCGCACATCCAAGGCACCAAGGTGCCGATG
1 GAGGCTCCCGCACATCCAA-GCACCAAGGTGCCGATG
97508021 CTACTCGAGG
Statistics
Matches: 94, Mismatches: 22, Indels: 11
0.74 0.17 0.09
Matches are distributed among these distances:
41 1 0.01
42 52 0.55
43 33 0.35
44 7 0.07
45 1 0.01
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.19
Consensus pattern (41 bp):
GAGGCTCCCGCACATCCAAGCACCAAGGTGCCGATGGTGCC
Found at i:97508030 original size:43 final size:42
Alignment explanation
Indices: 97506148--97508033 Score: 358
Period size: 43 Copynumber: 44.4 Consensus size: 42
97506138 AAATTAGCTT
** *
97506148 TGGTGCTCGACCCTCCCGCACATCCGATGCACCAAGGTGCCGA
1 TGGTGCTCGAGGCTCCCGCACATCC-AAGCACCAAGGTGCCGA
* * * ** **
97506191 TGGTGCCCTAGGCTCCCACACGA-CCAAGGGCTTAGGTGCCGA
1 TGGTGCTCGAGGCTCCCGCAC-ATCCAAGCACCAAGGTGCCGA
* * ** * *
97506233 TGGT-CCCGAGGCTCTCGCACGA-CCAAGGGCCTAGGTTACCGA
1 TGGTGCTCGAGGCTCCCGCAC-ATCCAAGCACCAAGG-TGCCGA
* * * * ** *
97506275 TGGTGCCCGAGGTTCCCACACGA-CCATGGGCCTAGGTCGCCGA
1 TGGTGCTCGAGGCTCCCGCAC-ATCCAAGCACCAAGGT-GCCGA
* * * ** * *
97506318 TGGTGC-CTGAGTCTCCCGGAC-TACCAGGGTCCTAGGTTGTCGA
1 TGGTGCTC-GAGGCTCCCGCACAT-CCAAGCACCAAGG-TGCCGA
* * * ** * * *
97506361 TGGTGCCCGAGGCTCTCGCACGA-CCAGGGGCCTAGGTTACCAA
1 TGGTGCTCGAGGCTCCCGCAC-ATCCAAGCACCAAGG-TGCCGA
* * **
97506404 TGGTGCCCGAGGCTCCCGCACAACCAAGGGCCTAA-GTGCCGA
1 TGGTGCTCGAGGCTCCCGCACATCCAAGCACC-AAGGTGCCGA
* * ** * ** * *
97506446 TAGTGCCCGAGTTTCTCGCACGA-CCAAGGGCCTAGGTTGTCGA
1 TGGTGCTCGAGGCTCCCGCAC-ATCCAAGCACCAAGG-TGCCGA
* * * * ** * *
97506489 TGGT-CTCAAGGCTCTCGCA-AGACCAGGGGCCTAGGTTGCCGG
1 TGGTGCTCGAGGCTCCCGCACA-TCCAAGCACCAAGG-TGCCGA
* ** * *
97506531 TGGTGCTCGAGGCTCCCGCACGA-CCAGGGGCCCAGGTTACCGA
1 TGGTGCTCGAGGCTCCCGCAC-ATCCAAGCACCAAGG-TGCCGA
* * * ** * *
97506574 TGGTGCTCGAGGCTCTCTCACGA-CCAGGGGCCTAGGTTGTCGA
1 TGGTGCTCGAGGCTCCCGCAC-ATCCAAGCACCAAGG-TGCCGA
* *
97506617 TGTTGC-CTGAGGCTCCCGCACATCCAAGCACCAAAGTGCCGA
1 TGGTGCTC-GAGGCTCCCGCACATCCAAGCACCAAGGTGCCGA
* *
97506659 TGGTG-TCCGAGGCTTCCACACATCCAAGCACCAAGGTGCCGA
1 TGGTGCT-CGAGGCTCCCGCACATCCAAGCACCAAGGTGCCGA
* * ** *
97506701 TGATGCTCGAGGCTCCCACACGA-CCAAGGGCCTAGGTTGCCGA
1 TGGTGCTCGAGGCTCCCGCAC-ATCCAAGCACCAAGG-TGCCGA
** * *
97506744 TGGTGC-CGAGGCTCTCC-CACGA-CCAAGGGCCTAGGTTACCGA
1 TGGTGCTCGAGGCTC-CCGCAC-ATCCAAGCACCAAGG-TGCCGA
* * ** *
97506786 TGGTGCCCGAGGCTCCCGCACGAT-CGAGGGCCTAGGTTGCCGA
1 TGGTGCTCGAGGCTCCCGCAC-ATCCAAGCACCAAGG-TGCCGA
* * ** *
97506829 TGGTGCCCGAGGCTGCCGCACGA-CCAAGGGCCTAGGTTGCCGA
1 TGGTGCTCGAGGCTCCCGCAC-ATCCAAGCACCAAGG-TGCCGA
* * *
97506872 TGGTGTTCGAGGCTCCCGCACATCCAAGCACAAAGGTGCTGA
1 TGGTGCTCGAGGCTCCCGCACATCCAAGCACCAAGGTGCCGA
* * ** * *
97506914 TGGT-ATCCGAGGCTCCCACACGA-CCAAGGGCCTAGGTTACCGA
1 TGGTGCT-CGAGGCTCCCGCAC-ATCCAAGCACCAAGG-TGCCGA
* * ** * *
97506957 TGGTGCCCGAGGCTCCCGCACGA-CCAGGGGCCTAGGTTACCGA
1 TGGTGCTCGAGGCTCCCGCAC-ATCCAAGCACCAAGG-TGCCGA
* * * **
97507000 TGGTGTTCGAGGCTCCCGCACGA-CCAAAG-GCCTAGGTTATCGA
1 TGGTGCTCGAGGCTCCCGCAC-ATCC-AAGCACCAAGG-TGCCGA
* ** * * *
97507043 TGGTG-TCCGAGGCTTCCATACGTCCAAGGGA-AAAGGTTGCCGA
1 TGGTGCT-CGAGGCTCCCGCACATCCAA-GCACCAAGG-TGCCGA
* *
97507086 TGGTG-TCTGAGGCTCACC-CACGA-CCAAGCACTAAGGTGCCGG
1 TGGTGCTC-GAGGCTC-CCGCAC-ATCCAAGCACCAAGGTGCCGA
* * *
97507128 TGGTGCCCGAGGCTCCCGCACGA-CCAAG-AGCCTAGGTTGTCGA
1 TGGTGCTCGAGGCTCCCGCAC-ATCCAAGCA-CCAAGG-TGCCGA
* * ** * *
97507171 TGGTGC-CGAGGCTCTCTCACGA-CCAAGGGCCTAGGTTGACGA
1 TGGTGCTCGAGGCTCCCGCAC-ATCCAAGCACCAAGG-TGCCGA
* * ** * *
97507213 TGGTGCTCGAGGCTCCCGCATGA-CCAGGGGCCTAGGTTCCCGA
1 TGGTGCTCGAGGCTCCCGCA-CATCCAAGCACCAAGG-TGCCGA
* * * ** ** * *
97507256 TGGTGCCCTAGGCTCCAGCACGA-CTGAGGGCCTATGTTGCCGA
1 TGGTGCTCGAGGCTCCCGCAC-ATCCAAGCACC-AAGGTGCCGA
* * * ** * *
97507299 TAGTG-TCCAAGGCTCCCGTACGA-CCAAGGGCCTAGGTTACCGA
1 TGGTGCT-CGAGGCTCCCGCAC-ATCCAAGCACCAAGG-TGCCGA
* *
97507342 TGGTGTTCGAGGCTCCCGTACATCCAAGCACCAAGGTGCCGA
1 TGGTGCTCGAGGCTCCCGCACATCCAAGCACCAAGGTGCCGA
* ** * *
97507384 TGG-G-TCTGAGGCTCCCACACGA-CCAAGGGCCTAGGTTTCCGA
1 TGGTGCTC-GAGGCTCCCGCAC-ATCCAAGCACCAAGG-TGCCGA
* * *
97507426 TGGTGCCCGAGGCTCCC-CACGA-CCTGAG-ACCTAGGTTGCCGA
1 TGGTGCTCGAGGCTCCCGCAC-ATCC-AAGCACCAAGG-TGCCGA
* * * * * * * *
97507468 TGGTGTTCGAGGCTCCTGTACGAGCAAAGGC-CTAGGGTACCGA
1 TGGTGCTCGAGGCTCCCGCAC-ATCCAA-GCACCAAGGTGCCGA
* * * ** * *
97507511 TGGTG-TCTGAGGCTTCCGTATATCCAAGGGCCTAGGTTACCGA
1 TGGTGCTC-GAGGCTCCCGCACATCCAAGCACCAAGG-TGCCGA
* *
97507554 TGGTG-TCCGAAGCTCCC-C-CATGACCAATCACCAAGGTGCCGA
1 TGGTGCT-CGAGGCTCCCGCACAT--CCAAGCACCAAGGTGCCGA
* * * ** * *
97507596 TGGTGCCCGAGGCTCCGGTACGA-CCAAGGGCCTAGTTTGCCGA
1 TGGTGCTCGAGGCTCCCGCAC-ATCCAAGCACCAAG-GTGCCGA
* *** * *
97507639 TGGTGCCCGAGGCTCCCGC-CGA-CCAAGGTTCTAGGTTACCGA
1 TGGTGCTCGAGGCTCCCGCAC-ATCCAAGCACCAAGG-TGCCGA
* ** *
97507681 TGGT-ATCCGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTG-CGA
1 TGGTGCT-CGAGGCTCCCGCAC-ATCCAAGCACCAAGG-TGCCGA
* * * ** * * *
97507723 TGGTG-TCAAGGCTCTCGCCCGAT-CAAGGGCCTAGGTTACCAA
1 TGGTGCTCGAGGCTCCCGCAC-ATCCAAGCACCAAGG-TGCCGA
* * * * * * **
97507765 TAGTGCCCGAGGCTCCCACACGA-CAAAG-ACCTAGGTTACTAA
1 TGGTGCTCGAGGCTCCCGCAC-ATCCAAGCACCAAGG-TGCCGA
* ** ** * *
97507807 TGGTGCCCGAGGCTCTAGCACGA-CCAAGGGCCGAGGCTCCCGCA
1 TGGTGCTCGAGGCTCCCGCAC-ATCCAAGCACCAAGG-TGCCG-A
* ** ** *
97507851 -CGACCT-GAGGCTCTTGCACATCTAAGCACCAAGGTGCCGA
1 TGGTGCTCGAGGCTCCCGCACATCCAAGCACCAAGGTGCCGA
* * **
97507891 TGGTGC-CTGAGGCTCCCGCACATTCGAGCACCAAGGTGCTAA
1 TGGTGCTC-GAGGCTCCCGCACATCCAAGCACCAAGGTGCCGA
* * * * * *
97507933 TGGTGCACGAGGCTCCTGCATAACCAAG-AGCCTAGTTTGCCGA
1 TGGTGCTCGAGGCTCCCGCACATCCAAGCA-CCAAG-GTGCCGA
*
97507976 TGGT-TTCCGAGGCTCCCGCACATCCAAGGCACCAAGGTGCCGA
1 TGGTGCT-CGAGGCTCCCGCACATCCAA-GCACCAAGGTGCCGA
* *
97508019 TGCTACTCGAGGCTC
1 TGGTGCTCGAGGCTC
97508034 TCACACCACT
Statistics
Matches: 1451, Mismatches: 290, Indels: 204
0.75 0.15 0.10
Matches are distributed among these distances:
40 4 0.00
41 92 0.06
42 549 0.38
43 778 0.54
44 25 0.02
45 3 0.00
ACGTcount: A:0.20, C:0.31, G:0.31, T:0.18
Consensus pattern (42 bp):
TGGTGCTCGAGGCTCCCGCACATCCAAGCACCAAGGTGCCGA
Found at i:97508335 original size:43 final size:42
Alignment explanation
Indices: 97508275--97508418 Score: 135
Period size: 43 Copynumber: 3.4 Consensus size: 42
97508265 AGCCTCGGTG
* *
97508275 CCATCGGTAACCTAGGCCCTTGGTCGTACGGGAGCCTCAAGCA
1 CCATCAGTAACCTAGGCCC-TGGTCGTGCGGGAGCCTCAAGCA
* * * ** **
97508318 CTATCAGTAACCTAGGCCCCTAGTTGTGTAGGAGCCTCGGGCA
1 CCATCAGTAACCTAGG-CCCTGGTCGTGCGGGAGCCTCAAGCA
* **
97508361 CCATCGGTAACCTAGGACCCTGGTCGTGCGGGAGCCTCGGGCA
1 CCATCAGTAACCTAGG-CCCTGGTCGTGCGGGAGCCTCAAGCA
* *
97508404 CCATCGGCAACCTAG
1 CCATCAGTAACCTAG
97508419 TGTCATTGGT
Statistics
Matches: 83, Mismatches: 17, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
43 80 0.96
44 3 0.04
ACGTcount: A:0.20, C:0.32, G:0.29, T:0.19
Consensus pattern (42 bp):
CCATCAGTAACCTAGGCCCTGGTCGTGCGGGAGCCTCAAGCA
Found at i:97508648 original size:17 final size:17
Alignment explanation
Indices: 97508596--97508648 Score: 61
Period size: 19 Copynumber: 3.0 Consensus size: 17
97508586 TATGGAAACT
*
97508596 TGATCTTCGAAGATATG
1 TGATCTTAGAAGATATG
**
97508613 CAATCTTAGATATGATATG
1 TGATCTTAGA-A-GATATG
97508632 TGATCTTAGAAGATATG
1 TGATCTTAGAAGATATG
97508649 ATTTTGTAAT
Statistics
Matches: 29, Mismatches: 5, Indels: 4
0.76 0.13 0.11
Matches are distributed among these distances:
17 13 0.45
18 2 0.07
19 14 0.48
ACGTcount: A:0.34, C:0.09, G:0.21, T:0.36
Consensus pattern (17 bp):
TGATCTTAGAAGATATG
Found at i:97508667 original size:22 final size:23
Alignment explanation
Indices: 97508620--97508674 Score: 60
Period size: 22 Copynumber: 2.5 Consensus size: 23
97508610 ATGCAATCTT
* * *
97508620 AGATATGA-TATGTGATCTTAGA
1 AGATATGATTTTGTAATCCTAGA
97508642 AGATATGATTTTGTAATCCTAG-
1 AGATATGATTTTGTAATCCTAGA
*
97508664 AGATTTGATTT
1 AGATATGATTT
97508675 GTAGATACCC
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
22 18 0.64
23 10 0.36
ACGTcount: A:0.33, C:0.05, G:0.20, T:0.42
Consensus pattern (23 bp):
AGATATGATTTTGTAATCCTAGA
Found at i:97510853 original size:49 final size:49
Alignment explanation
Indices: 97510796--97510894 Score: 153
Period size: 49 Copynumber: 2.0 Consensus size: 49
97510786 AAGATTGCCA
* * *
97510796 CCTAAGAGGGAGGTGGACCACAAGATTGAGCTGTTGCCCAATGCTGAAC
1 CCTAAGAGGGAGGTGGACCACAAGATTCAGCTCTTGCCCAATACTGAAC
* *
97510845 CCTAAGAGGGAGGTGGATCACAAGATTCAGTTCTTGCCCAATACTGAAC
1 CCTAAGAGGGAGGTGGACCACAAGATTCAGCTCTTGCCCAATACTGAAC
97510894 C
1 C
97510895 GCTAGCAAGG
Statistics
Matches: 45, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
49 45 1.00
ACGTcount: A:0.29, C:0.23, G:0.27, T:0.20
Consensus pattern (49 bp):
CCTAAGAGGGAGGTGGACCACAAGATTCAGCTCTTGCCCAATACTGAAC
Found at i:97513803 original size:17 final size:17
Alignment explanation
Indices: 97513753--97513803 Score: 66
Period size: 19 Copynumber: 2.9 Consensus size: 17
97513743 TGGAAACATG
*
97513753 ATCTTCGAAGATATGCA
1 ATCTTAGAAGATATGCA
*
97513770 ATCTTAGATATGATATGTA
1 ATCTTAGA-A-GATATGCA
97513789 ATCTTAGAAGATATG
1 ATCTTAGAAGATATG
97513804 ATTTTGTAAT
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
17 13 0.43
18 2 0.07
19 15 0.50
ACGTcount: A:0.37, C:0.10, G:0.18, T:0.35
Consensus pattern (17 bp):
ATCTTAGAAGATATGCA
Found at i:97513803 original size:22 final size:21
Alignment explanation
Indices: 97513775--97513832 Score: 71
Period size: 22 Copynumber: 2.7 Consensus size: 21
97513765 ATGCAATCTT
* *
97513775 AGATATGATATGTAATCTTAG
1 AGATATGATTTGTAATCCTAG
97513796 AAGATATGATTTTGTAATCCTAG
1 -AGATATGA-TTTGTAATCCTAG
*
97513819 AGATTTGATTTGTA
1 AGATATGATTTGTA
97513833 GATACCCTCT
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
21 6 0.19
22 15 0.47
23 11 0.34
ACGTcount: A:0.34, C:0.05, G:0.19, T:0.41
Consensus pattern (21 bp):
AGATATGATTTGTAATCCTAG
Found at i:97514343 original size:43 final size:42
Alignment explanation
Indices: 97514200--97514356 Score: 199
Period size: 42 Copynumber: 3.7 Consensus size: 42
97514190 GTCCGTGACA
* *
97514200 CTAGGCCCTTGGTCATGCGAGAGCCTCGGGACCATCGGCAAC
1 CTAGGCCCCTGGTCGTGCGAGAGCCTCGGGACCATCGGCAAC
* * ** * * *
97514242 ATAGGTCGTTGGTCGTGCGGGAGCCTTAGGTACCATCGGC-AC
1 CTAGGCCCCTGGTCGTGCGAGAGCC-TCGGGACCATCGGCAAC
*
97514284 CTAGGCCCCTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAAC
1 CTAGGCCCCTGGTCGTGCGAGAGCCTCGGG-ACCATCGGCAAC
97514327 CTAGGCCCCTGGTCGTGCGAGAGCCTCGGG
1 CTAGGCCCCTGGTCGTGCGAGAGCCTCGGG
97514357 TGTAACGCCC
Statistics
Matches: 98, Mismatches: 14, Indels: 5
0.84 0.12 0.04
Matches are distributed among these distances:
41 3 0.03
42 52 0.53
43 43 0.44
ACGTcount: A:0.15, C:0.32, G:0.35, T:0.18
Consensus pattern (42 bp):
CTAGGCCCCTGGTCGTGCGAGAGCCTCGGGACCATCGGCAAC
Found at i:97515477 original size:93 final size:93
Alignment explanation
Indices: 97515364--97515534 Score: 270
Period size: 93 Copynumber: 1.8 Consensus size: 93
97515354 GCCCCTAAGT
* * *
97515364 GAACTCAGACTCAACTCAACGAGCTCGGGCGTTCACATCCATAAGTGAACTTGGACTCAACTCAA
1 GAACTCAGACTCAACTCAACGAGCTCGGACATTCACATCCATAAGTGAACTCGGACTCAACTCAA
97515429 CGAGTTCGGATGCCTAGTTACATTTCAC
66 CGAGTTCGGATGCCTAGTTACATTTCAC
* * * * *
97515457 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCCTAAGTGAACTCGGACTCAACTCTA
1 GAACTCAGACTCAACTCAACGAGCTCGGACATTCACATCCATAAGTGAACTCGGACTCAACTCAA
97515522 CGAGTTCGGATGC
66 CGAGTTCGGATGC
97515535 TCAACCATCC
Statistics
Matches: 70, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
93 70 1.00
ACGTcount: A:0.28, C:0.29, G:0.20, T:0.23
Consensus pattern (93 bp):
GAACTCAGACTCAACTCAACGAGCTCGGACATTCACATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATTTCAC
Found at i:97515531 original size:46 final size:46
Alignment explanation
Indices: 97515356--97515531 Score: 180
Period size: 46 Copynumber: 3.8 Consensus size: 46
97515346 TGTAACCCGC
* * * *
97515356 CCCTAAGTGAACTCAGACTCAACTCAACGAGCTCGGGCGTTCACAT
1 CCCTAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCACAT
* *
97515402 CCATAAGTGAACTTGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCCTAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCACAT
* * * *
97515452 --TTCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCCTAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCACAT
*
97515495 CCCTAAGTGAACTCGGACTCAACTCTACGAGTTCGGA
1 CCCTAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
97515532 TGCTCAACCA
Statistics
Matches: 106, Mismatches: 15, Indels: 18
0.76 0.11 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 1 0.01
45 2 0.02
46 60 0.57
47 28 0.26
48 2 0.02
49 1 0.01
50 4 0.04
51 2 0.02
ACGTcount: A:0.28, C:0.29, G:0.20, T:0.23
Consensus pattern (46 bp):
CCCTAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCACAT
Found at i:97516005 original size:16 final size:16
Alignment explanation
Indices: 97515984--97516023 Score: 80
Period size: 16 Copynumber: 2.5 Consensus size: 16
97515974 TTGCCCCTAA
97515984 ACTTTTGCATAATTAC
1 ACTTTTGCATAATTAC
97516000 ACTTTTGCATAATTAC
1 ACTTTTGCATAATTAC
97516016 ACTTTTGC
1 ACTTTTGC
97516024 CCCTAGGCTC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 24 1.00
ACGTcount: A:0.28, C:0.20, G:0.07, T:0.45
Consensus pattern (16 bp):
ACTTTTGCATAATTAC
Found at i:97523063 original size:93 final size:93
Alignment explanation
Indices: 97522958--97523128 Score: 270
Period size: 93 Copynumber: 1.8 Consensus size: 93
97522948 GCCCCTAAGT
* * * *
97522958 GAACTCAGACTCAACTCAACGAGCTCGGGCGTTTGCATCCATAAGTGAACTTGGACTCAACTCAA
1 GAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
97523023 CGAGTTCGGATGCCTAGTTACATTTCAC
66 CGAGTTCGGATGCCTAGTTACATTTCAC
* * **
97523051 GAACTCAGACTCAACTCAACGAGTTCGGACATTCGCATCCCTAAGTGAACTCGGACTCAACTTTA
1 GAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
97523116 CGAGTTCGGATGC
66 CGAGTTCGGATGC
97523129 TCAACCATCC
Statistics
Matches: 70, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
93 70 1.00
ACGTcount: A:0.28, C:0.27, G:0.20, T:0.24
Consensus pattern (93 bp):
GAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATTTCAC
Found at i:97524483 original size:43 final size:43
Alignment explanation
Indices: 97524420--97525235 Score: 545
Period size: 43 Copynumber: 19.2 Consensus size: 43
97524410 GGATATTACA
*
97524420 TCGGGCACCATCGGGAACCTAGGCCAC-TGGTCGTACGGGAGCC
1 TCGGGCACCATCGGTAACCTAGGCC-CTTGGTCGTACGGGAGCC
* *
97524463 AT-GGGCACCATCAGTAACCTAGGCCCTTGGTCGTACGAGAGCC
1 -TCGGGCACCATCGGTAACCTAGGCCCTTGGTCGTACGGGAGCC
*
97524506 TCGGG-ACCATCGGTAACCTAGGCCCTTGGTCGTGCGGGAGCC
1 TCGGGCACCATCGGTAACCTAGGCCCTTGGTCGTACGGGAGCC
* * * *
97524548 TCGGGCACCGTCGGTAACCTAGGCCGTTGGTTGTGCGGGAGCC
1 TCGGGCACCATCGGTAACCTAGGCCCTTGGTCGTACGGGAGCC
* * * * ** * **
97524591 TCGAGCACCATTGG-CACCTTGGTGCTTAGAT-GTGTGGGAGCC
1 TCGGGCACCATCGGTAACCTAGGCCCTT-GGTCGTACGGGAGCC
** * * * ** *
97524633 TCGGGCACCATCGAAAACTTAGGCCCCTAGTCGTGTGGTAGCC
1 TCGGGCACCATCGGTAACCTAGGCCCTTGGTCGTACGGGAGCC
* * * * * * *
97524676 TCGAGCATCATCAGCAACCTAGGCCCCTGGTCGTGCGAGAGCC
1 TCGGGCACCATCGGTAACCTAGGCCCTTGGTCGTACGGGAGCC
* ** *
97524719 TCGGGCACCATCGG-CACCTTA-GTACTTGGAT-GTGCGGGAGCC
1 TCGGGCACCATCGGTAACC-TAGGCCCTTGG-TCGTACGGGAGCC
* ** ** * * **
97524761 TTGAACACCATCGACAACCTAGGCCTTTGGTCCTGTGGGAGCC
1 TCGGGCACCATCGGTAACCTAGGCCCTTGGTCGTACGGGAGCC
* * * ** *
97524804 TCGGGTACCATCGG-CACCTTGGTGCTTGGAT-GTATGGGAGCC
1 TCGGGCACCATCGGTAACCTAGGCCCTTGG-TCGTACGGGAGCC
* ** * * *
97524846 TCAGGCACCATCGACAACCTAGGCCCCTGGTCATGC-GGAGCC
1 TCGGGCACCATCGGTAACCTAGGCCCTTGGTCGTACGGGAGCC
* * *
97524888 TCAGGCACCATCAGTAACCTAGG-TCTCTGGTCGTACGGGAGCC
1 TCGGGCACCATCGGTAACCTAGGCCCT-TGGTCGTACGGGAGCC
* * * * * * *
97524931 TCAGCCACCATCGGAAACCTAGGTCCTTCGTCGTGCGAGAGCC
1 TCGGGCACCATCGGTAACCTAGGCCCTTGGTCGTACGGGAGCC
* * * **
97524974 TCGAG-ACGATCGG-CACCTAGGCCCTTGGTCGTGTGGGAGCC
1 TCGGGCACCATCGGTAACCTAGGCCCTTGGTCGTACGGGAGCC
* * * * *
97525015 TCGGGCACAATCGGCAACCTAGGCCCCTGGTCATGCGGGAGCC
1 TCGGGCACCATCGGTAACCTAGGCCCTTGGTCGTACGGGAGCC
** * * * *
97525058 TCAAGCACCATCGGTAACCTA-GTCATTGGTCGTGCGAGAGCC
1 TCGGGCACCATCGGTAACCTAGGCCCTTGGTCGTACGGGAGCC
** * * ** *
97525100 TCGGGTGCCATCGG-CACCTTGGTGCTTGGAT-GTGCGGGAGCC
1 TCGGGCACCATCGGTAACCTAGGCCCTTGG-TCGTACGGGAGCC
** **
97525142 TCGAACACCATCGACAACCTAGGCCCTTGGTCGT-CTGGGAGCC
1 TCGGGCACCATCGGTAACCTAGGCCCTTGGTCGTAC-GGGAGCC
*
97525185 TCGGGCACCATCAGTAACCTAGGCCCTTGGTCGT-CTGGGAGCC
1 TCGGGCACCATCGGTAACCTAGGCCCTTGGTCGTAC-GGGAGCC
*
97525228 TCGAGCAC
1 TCGGGCAC
97525236 TATCAGCACC
Statistics
Matches: 604, Mismatches: 144, Indels: 49
0.76 0.18 0.06
Matches are distributed among these distances:
41 32 0.05
42 233 0.39
43 336 0.56
44 3 0.00
ACGTcount: A:0.18, C:0.31, G:0.31, T:0.20
Consensus pattern (43 bp):
TCGGGCACCATCGGTAACCTAGGCCCTTGGTCGTACGGGAGCC
Found at i:97524544 original size:85 final size:84
Alignment explanation
Indices: 97524423--97525235 Score: 603
Period size: 85 Copynumber: 9.6 Consensus size: 84
97524413 TATTACATCG
* *
97524423 GGCACCATCGGGAACCTAGGCCAC-TGGTCGTACGGGAGCCAT-GGGCACCATCAGTAACCTAGG
1 GGCACCATCGGCAACCTAGGCC-CTTGGTCGTGCGGGAGCC-TCGGGCACCATC-GTAACCTAGG
* *
97524486 CCCTTGGTCGTACGAGAGCCTC
63 CCCTTGGTCGTGCGGGAGCCTC
* * *
97524508 GGGACCATCGGTAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCGTCGGTAACCTAGGCC
1 GGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATC-GTAACCTAGGCC
* *
97524573 GTTGGTTGTGCGGGAGCCTC
65 CTTGGTCGTGCGGGAGCCTC
* * ** * * * *
97524593 GAGCACCATTGGC-ACCTTGGTGCTTAGAT-GTGTGGGAGCCTCGGGCACCATCGAAAACTTAGG
1 G-GCACCATCGGCAACCTAGGCCCTT-GGTCGTGCGGGAGCCTCGGGCACCATCG-TAACCTAGG
* * * *
97524656 CCCCTAGTCGTGTGGTAGCCTC
63 CCCTTGGTCGTGCGGGAGCCTC
* * * * ** *
97524678 GAGCATCATCAGCAACCTAGGCCCCTGGTCGTGCGAGAGCCTCGGGCACCATCGGCACCTTA-GT
1 G-GCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGTAACC-TAGGC
* *
97524742 ACTTGGAT-GTGCGGGAGCCTT
64 CCTTGG-TCGTGCGGGAGCCTC
* * * * * * ** * **
97524763 GAACACCATCGACAACCTAGGCCTTTGGTCCTGTGGGAGCCTCGGGTACCATCGGCACCTTGGTG
1 G-GCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGTAACCTAGGCC
**
97524828 CTTGGAT-GTATGGGAGCCTC
65 CTTGG-TCGTGCGGGAGCCTC
* * * *
97524848 AGGCACCATCGACAACCTAGGCCCCTGGTCATGC-GGAGCCTCAGGCACCATCAGTAACCTAGG-
1 -GGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATC-GTAACCTAGGC
* *
97524911 TCTCTGGTCGTACGGGAGCCTC
64 CCT-TGGTCGTGCGGGAGCCTC
* * * * * * * **
97524933 AGCCACCATCGGAAACCTAGGTCCTTCGTCGTGCGAGAGCCTCGAG-ACGATCGGCACCTAGGCC
1 -GGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGTAACCTAGGCC
*
97524997 CTTGGTCGTGTGGGAGCCTC
65 CTTGGTCGTGCGGGAGCCTC
* * * ** *
97525017 GGGCACAATCGGCAACCTAGGCCCCTGGTCATGCGGGAGCCTCAAGCACCATCGGTAACCTA-GT
1 -GGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATC-GTAACCTAGGC
* *
97525081 CATTGGTCGTGCGAGAGCCTC
64 CCTTGGTCGTGCGGGAGCCTC
** * ** ** *
97525102 GGGTGCCATCGGC-ACCTTGGTGCTTGGAT-GTGCGGGAGCCTCGAACACCATCGACAACCTAGG
1 -GGCACCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCG-TAACCTAGG
97525165 CCCTTGGTCGT-CTGGGAGCCTC
63 CCCTTGGTCGTGC-GGGAGCCTC
* * *
97525187 GGGCACCATCAGTAACCTAGGCCCTTGGTCGT-CTGGGAGCCTCGAGCAC
1 -GGCACCATCGGCAACCTAGGCCCTTGGTCGTGC-GGGAGCCTCGGGCAC
97525236 TATCAGCACC
Statistics
Matches: 575, Mismatches: 128, Indels: 49
0.76 0.17 0.07
Matches are distributed among these distances:
83 1 0.00
84 120 0.21
85 369 0.64
86 85 0.15
ACGTcount: A:0.18, C:0.31, G:0.31, T:0.20
Consensus pattern (84 bp):
GGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGTAACCTAGGCCC
TTGGTCGTGCGGGAGCCTC
Found at i:97524759 original size:170 final size:167
Alignment explanation
Indices: 97524478--97525335 Score: 709
Period size: 170 Copynumber: 5.0 Consensus size: 167
97524468 CACCATCAGT
** * * * * *
97524478 AACCTAGGCCCTTGGTCGTACGAGAGCCTCG-GGACCATCGGTAACCTAGGCCCTTGGTCGTGCG
1 AACCTAGGCCCTTGGTCGTGTGGGAGCCTCGAGCACCATCAGCAACCTAGGCCCCTGGTCGTGCG
* * *
97524542 GGAGCCTCGGGCACCGTCGGTAACCTAGGCCGTTGGTTGTGCGGGAGCCTCGAGCACCATTGGCA
66 GGAGCCTCGGGCACCATCGG-AACCTA-GTC-TTGG-TGTGCGGGAGCCTCGAGCACCATCGGCA
* * *
97524607 CCTTGGTGCTTAGATGTGTGGGAGCCTCGGGCACCATCGAA
127 CCTTGGTGCTTGGATGTGTGGGAGCCTCGAGCACCATCGAC
* * * * *
97524648 AACTTAGGCCCCTAGTCGTGTGGTAGCCTCGAGCATCATCAGCAACCTAGGCCCCTGGTCGTGCG
1 AACCTAGGCCCTTGGTCGTGTGGGAGCCTCGAGCACCATCAGCAACCTAGGCCCCTGGTCGTGCG
* * * * *
97524713 AGAGCCTCGGGCACCATCGGCACCTTAGTACTTGGATGTGCGGGAGCCTTGAACACCATCGACAA
66 GGAGCCTCGGGCACCATCGGAACC-TAGT-CTTGG-TGTGCGGGAGCCTCGAGCACCATCGGC-A
* * * * * *
97524778 CCTAGG-CCTTTGG-TCCTGTGGGAGCCTCGGGTACCATCGGC
127 CCTTGGTGC-TTGGAT-GTGTGGGAGCCTCGAGCACCATCGAC
* ** * *
97524819 -ACCTTGGTGCTTGGAT-GTATGGGAGCCTC-AGGCACCATC-GACAACCTAGGCCCCTGGTCAT
1 AACCTAGGCCCTTGG-TCGTGTGGGAGCCTCGA-GCACCATCAG-CAACCTAGGCCCCTGGTCGT
* * *
97524880 GC-GGAGCCTCAGGCACCATCAGTAACCTAGGTCTCTGGTCGTACGGGAGCCTC-AGCCACCATC
63 GCGGGAGCCTCGGGCACCATC-GGAACCTA-GTCT-TGGT-GTGCGGGAGCCTCGAG-CACCATC
* * * * * * * *
97524943 GGAAACCTAGGTCCTTCG-TCGTGCGAGAGCCTCGAG-ACGATCGGC
123 GG-CACCTTGGTGCTTGGAT-GTGTGGGAGCCTCGAGCACCATCGAC
* * * *
97524988 -ACCTAGGCCCTTGGTCGTGTGGGAGCCTCGGGCACAATCGGCAACCTAGGCCCCTGGTCATGCG
1 AACCTAGGCCCTTGGTCGTGTGGGAGCCTCGAGCACCATCAGCAACCTAGGCCCCTGGTCGTGCG
** * * **
97525052 GGAGCCTCAAGCACCATCGGTAACCTAGTCATTGGTCGTGCGAGAGCCTCGGGTGCCATCGGCAC
66 GGAGCCTCGGGCACCATCGG-AACCTAGTC-TTGGT-GTGCGGGAGCCTCGAGCACCATCGGCAC
* *
97525117 CTTGGTGCTTGGATGTGCGGGAGCCTCGAACACCATCGAC
128 CTTGGTGCTTGGATGTGTGGGAGCCTCGAGCACCATCGAC
* * * *
97525157 AACCTAGGCCCTTGGTCGTCTGGGAGCCTCGGGCACCATCAGTAACCTAGGCCCTTGGTCGT-CT
1 AACCTAGGCCCTTGGTCGTGTGGGAGCCTCGAGCACCATCAGCAACCTAGGCCCCTGGTCGTGC-
* * * * * * * * *
97525221 GGGAGCCTCGAGCACTATCAGCACCTTGGTGCCTCGGATGTACGGGAGCCTCGAGCAGCATTGGC
65 GGGAGCCTCGGGCACCATCGGAACC-TAGT--CTTGG-TGTGCGGGAGCCTCGAGCACCATCGGC
* *
97525286 ACCTTGGTGCTTGGATGTGTGGGAGCCTC-AGACACCGTAGAC
126 ACCTTGGTGCTTGGATGTGTGGGAGCCTCGAG-CACCATCGAC
97525328 AACCTAGG
1 AACCTAGG
97525336 ACGTTGGATG
Statistics
Matches: 559, Mismatches: 97, Indels: 63
0.78 0.13 0.09
Matches are distributed among these distances:
168 26 0.05
169 123 0.22
170 259 0.46
171 149 0.27
172 2 0.00
ACGTcount: A:0.18, C:0.30, G:0.31, T:0.20
Consensus pattern (167 bp):
AACCTAGGCCCTTGGTCGTGTGGGAGCCTCGAGCACCATCAGCAACCTAGGCCCCTGGTCGTGCG
GGAGCCTCGGGCACCATCGGAACCTAGTCTTGGTGTGCGGGAGCCTCGAGCACCATCGGCACCTT
GGTGCTTGGATGTGTGGGAGCCTCGAGCACCATCGAC
Found at i:97524803 original size:213 final size:212
Alignment explanation
Indices: 97524466--97525272 Score: 697
Period size: 213 Copynumber: 3.8 Consensus size: 212
97524456 GGGAGCCATG
* * *
97524466 GGCACCATCAGTAACCTAGGCCCTTGGTCGTACGAGAGCCTCGGG-ACCATCGGTAACCTAGGCC
1 GGCACCATCAGTAACCTAGGCCCCTGGTCGTACGAGAGCCTCGGGCACCATCGGAAACCTAGGTC
* * * * * * *
97524530 CTTGGTCGTGCGGGAGCCTCGGGCACCGTCGGTAACCTAGGCCGTTGGTTGTGCGGGAGCCTCGA
66 CTTGGTCGTGCGGGAGCCTC-GACACCATCGGCAACCTAGGCCCTTGGTCGTGTGGGAGCCTCGG
* * * *
97524595 GCACCATTGGCACCTTGGTGCTTAGATGTGTGGGAGCCTCGGGCACCATCGAAAACTTAGGCCCC
130 GCACCATCGGCACCTTGGTGCTTAGATGTATGGGAGCCTCAGGCACCATCGAAAACCTAGGCCCC
* *
97524660 TAGTCGTGTGGTAGCCTC-
195 TAGTCATGCGG-AGCCTCA
* * * *
97524678 GAGCATCATCAGCAACCTAGGCCCCTGGTCGTGCGAGAGCCTCGGGCACCATCGG-CACCTTA-G
1 G-GCACCATCAGTAACCTAGGCCCCTGGTCGTACGAGAGCCTCGGGCACCATCGGAAACC-TAGG
* * * * *
97524741 TACTTGGAT-GTGCGGGAGCCTTGAACACCATCGACAACCTAGGCCTTTGGTCCTGTGGGAGCCT
64 TCCTTGG-TCGTGCGGGAGCCTCG-ACACCATCGGCAACCTAGGCCCTTGGTCGTGTGGGAGCCT
* * *
97524805 CGGGTACCATCGGCACCTTGGTGCTTGGATGTATGGGAGCCTCAGGCACCATCGACAACCTAGGC
127 CGGGCACCATCGGCACCTTGGTGCTTAGATGTATGGGAGCCTCAGGCACCATCGAAAACCTAGGC
*
97524870 CCCTGGTCATGCGGAGCCTCA
192 CCCTAGTCATGCGGAGCCTCA
* * * * *
97524891 GGCACCATCAGTAACCTAGGTCTCTGGTCGTACGGGAGCCTCAGCCACCATCGGAAACCTAGGTC
1 GGCACCATCAGTAACCTAGGCCCCTGGTCGTACGAGAGCCTCGGGCACCATCGGAAACCTAGGTC
* * * *
97524956 CTTCGTCGTGCGAGAGCCTCGAGACGATCGGC-ACCTAGGCCCTTGGTCGTGTGGGAGCCTCGGG
66 CTTGGTCGTGCGGGAGCCTCGACACCATCGGCAACCTAGGCCCTTGGTCGTGTGGGAGCCTCGGG
* * ** * * ** *
97525020 CACAATCGGCAACCTAGGCCCCT-G--GTCATGCGGGAGCCTCAAGCACCATCGGTAACCTA-GT
131 CACCATCGGC-ACCTTGGTGCTTAGATGT-AT--GGGAGCCTCAGGCACCATCGAAAACCTAGGC
** * * *
97525081 CATTGGTCGTGCGAGAGCCTCG
192 CCCTAGTCATGCG-GAGCCTCA
** ** * ** * * * **
97525103 GGTGCCATC-GGCACCTTGGTGCTTGGAT-GTGCGGGAGCCTCGAACACCATC-GACAACCTAGG
1 GGCACCATCAGTAACCTAGGCCCCTGG-TCGTACGAGAGCCTCGGGCACCATCGGA-AACCTAGG
* * * * *
97525165 CCCTTGGTCGT-CTGGGAGCCTCGGGCACCATCAGTAACCTAGGCCCTTGGTCGTCTGGGAGCCT
64 TCCTTGGTCGTGC-GGGAGCCTC-GACACCATCGGCAACCTAGGCCCTTGGTCGTGTGGGAGCCT
* * * ** *
97525229 CGAGCACTATCAGCACCTTGGTGCCTCGGATGTACGGGAGCCTC
127 CGGGCACCATCGGCACCTTGGTG-CTTAGATGTATGGGAGCCTC
97525273 GAGCAGCATT
Statistics
Matches: 483, Mismatches: 89, Indels: 45
0.78 0.14 0.07
Matches are distributed among these distances:
209 2 0.00
210 5 0.01
211 105 0.22
212 125 0.26
213 231 0.48
214 12 0.02
215 1 0.00
216 2 0.00
ACGTcount: A:0.18, C:0.31, G:0.31, T:0.20
Consensus pattern (212 bp):
GGCACCATCAGTAACCTAGGCCCCTGGTCGTACGAGAGCCTCGGGCACCATCGGAAACCTAGGTC
CTTGGTCGTGCGGGAGCCTCGACACCATCGGCAACCTAGGCCCTTGGTCGTGTGGGAGCCTCGGG
CACCATCGGCACCTTGGTGCTTAGATGTATGGGAGCCTCAGGCACCATCGAAAACCTAGGCCCCT
AGTCATGCGGAGCCTCA
Found at i:97525268 original size:43 final size:42
Alignment explanation
Indices: 97525221--97525314 Score: 118
Period size: 43 Copynumber: 2.2 Consensus size: 42
97525211 TTGGTCGTCT
97525221 GGGAGCCTCGAGCA-CTATCAGCACCTTGGTGCCTCGGATGTAC
1 GGGAGCCTCGAGCAGC-ATCAGCACCTTGGTG-CTCGGATGTAC
** * **
97525264 GGGAGCCTCGAGCAGCATTGGCACCTTGGTGCTTGGATGTGT
1 GGGAGCCTCGAGCAGCATCAGCACCTTGGTGCTCGGATGTAC
97525306 GGGAGCCTC
1 GGGAGCCTC
97525315 AGACACCGTA
Statistics
Matches: 45, Mismatches: 5, Indels: 3
0.85 0.09 0.06
Matches are distributed among these distances:
42 17 0.38
43 27 0.60
44 1 0.02
ACGTcount: A:0.16, C:0.27, G:0.35, T:0.22
Consensus pattern (42 bp):
GGGAGCCTCGAGCAGCATCAGCACCTTGGTGCTCGGATGTAC
Found at i:97525299 original size:128 final size:127
Alignment explanation
Indices: 97524511--97525315 Score: 332
Period size: 128 Copynumber: 6.3 Consensus size: 127
97524501 GAGCCTCGGG
** ** * * *
97524511 ACCATCGGTAACCTAGGCCCTTGG-TCGTGC-GGGAGCCTCGGGCACCGTCGGTAACCTAGGCCG
1 ACCATCGACAACCTAGGCCCTTGGAT-GT-CTGGGAGCCTCAAGCACCATCAGTAACCTA-GCCA
* * ** ** ** **
97524574 TTGGTTGTGCGGGAGCCTCGAGCACCATTGGCACCTTGGTGCTTAGATGTGTGGGAGCCTCGGGC
63 TTGGTCGTGCGAGAGCCTCGAGCACCATCAGCACCTTGGTGCTCGGATGTACGGGAGCCTCGAAC
* * * * * * * * * **
97524639 ACCATCGAAAACTTAGGCCCCTAG-TCGTGTGGTAGCCTCGAGCATCATCAGCAACCTAGGCCCC
1 ACCATCGACAACCTAGGCCCTTGGAT-GTCTGGGAGCCTCAAGCACCATCAGTAACCTA-GCCAT
* * * * * * *
97524703 TGGTCGTGCGAGAGCCTCGGGCACCATCGGCACCTTAGTACTTGGATGTGCGGGAGCCTTGAAC
64 TGGTCGTGCGAGAGCCTCGAGCACCATCAGCACCTTGGTGCTCGGATGTACGGGAGCCTCGAAC
* * * ** * ** * *
97524767 ACCATCGACAACCTAGGCCTTTGG-TCCTGTGGGAGCCTCGGGTACCATC-GGCACCTTGGTGC-
1 ACCATCGACAACCTAGGCCCTTGGAT-GTCTGGGAGCCTCAAGCACCATCAGTAACC-TAG-CCA
** * * * *
97524829 TTGGAT-GTATGGGAGCCTC-AGGCACCATC-GACAACCTAGG-CCCCTGGTCATG--C-GGAGC
63 TTGG-TCGTGCGAGAGCCTCGA-GCACCATCAG-C-ACCTTGGTGCTC-GG--ATGTACGGGAGC
*
97524887 CTC-AGGC
121 CTCGA-AC
* * * *
97524894 ACCATC-AGTAACCTAGG-TCTCTGG-TCGTAC-GGGAGCCTC-AGCCACCATCGGAAACCTAGG
1 ACCATCGA-CAACCTAGGCCCT-TGGAT-GT-CTGGGAGCCTCAAG-CACCATCAGTAACCTA-G
* * * * ** * **
97524954 TCC-TTCGTCGTGCGAGAGCCTCGAG-ACGATCGGCACCTAGGCCCTTGG-TCGTGTGGGAGCCT
60 -CCATTGGTCGTGCGAGAGCCTCGAGCACCATCAGCACCTTGGTGCTCGGAT-GTACGGGAGCCT
**
97525016 CGGGC
123 CGAAC
* * * * *
97525021 ACAATCGGCAACCTAGGCCCCTGGTCATG-C-GGGAGCCTCAAGCACCATCGGTAACCTAGTCAT
1 ACCATCGACAACCTAGGCCCTTGG--ATGTCTGGGAGCCTCAAGCACCATCAGTAACCTAGCCAT
* ** * * *
97525084 TGGTCGTGCGAGAGCCTCGGGTGCCATCGGCACCTTGGTGCTTGGATGTGCGGGAGCCTCGAAC
64 TGGTCGTGCGAGAGCCTCGAGCACCATCAGCACCTTGGTGCTCGGATGTACGGGAGCCTCGAAC
** *
97525148 ACCATCGACAACCTAGGCCCTTGG-TCGTCTGGGAGCCTCGGGCACCATCAGTAACCTAGGCCCT
1 ACCATCGACAACCTAGGCCCTTGGAT-GTCTGGGAGCCTCAAGCACCATCAGTAACCTA-GCCAT
* * *
97525212 TGGTCGT-CTGGGAGCCTCGAGCACTATCAGCACCTTGGTGCCTCGGATGTACGGGAGCCTCGAG
64 TGGTCGTGC-GAGAGCCTCGAGCACCATCAGCACCTTGGTG-CTCGGATGTACGGGAGCCTCGAA
97525276 C
127 C
* * * * ** *
97525277 AGCATTGGC-ACCTTGGTGCTTGGATGTGTGGGAGCCTCA
1 ACCATCGACAACCTAGGCCCTTGGATGTCTGGGAGCCTCA
97525316 GACACCGTAG
Statistics
Matches: 522, Mismatches: 113, Indels: 84
0.73 0.16 0.12
Matches are distributed among these distances:
123 1 0.00
124 2 0.00
125 2 0.00
126 36 0.07
127 211 0.40
128 236 0.45
129 30 0.06
130 4 0.01
ACGTcount: A:0.18, C:0.30, G:0.31, T:0.21
Consensus pattern (127 bp):
ACCATCGACAACCTAGGCCCTTGGATGTCTGGGAGCCTCAAGCACCATCAGTAACCTAGCCATTG
GTCGTGCGAGAGCCTCGAGCACCATCAGCACCTTGGTGCTCGGATGTACGGGAGCCTCGAAC
Found at i:97536211 original size:5 final size:5
Alignment explanation
Indices: 97536198--97536228 Score: 53
Period size: 5 Copynumber: 6.2 Consensus size: 5
97536188 TTCAATTTTC
*
97536198 TGCCA TGCCG TGCCA TGCCA TGCCA TGCCA T
1 TGCCA TGCCA TGCCA TGCCA TGCCA TGCCA T
97536229 CATACCATAC
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
5 24 1.00
ACGTcount: A:0.16, C:0.39, G:0.23, T:0.23
Consensus pattern (5 bp):
TGCCA
Found at i:97536993 original size:58 final size:59
Alignment explanation
Indices: 97536902--97537022 Score: 190
Period size: 58 Copynumber: 2.1 Consensus size: 59
97536892 CCCTCCCCAA
* *
97536902 TCCCAAAAGGTAGAATTCAGATACCATTACATGTTCGGTACCCAATAATGAATGAATCG
1 TCCCAAAAGGTAGAATTCAGATACCATTACATGTCCGGTACCCAACAATGAATGAATCG
* * *
97536961 TCCC-AAAGGTAGAATTCGGATACCGTTGCATGTCCGGTACCCAACAATGAATGAATCG
1 TCCCAAAAGGTAGAATTCAGATACCATTACATGTCCGGTACCCAACAATGAATGAATCG
97537019 TCCC
1 TCCC
97537023 TGTCCCTCCC
Statistics
Matches: 57, Mismatches: 5, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
58 53 0.93
59 4 0.07
ACGTcount: A:0.33, C:0.24, G:0.19, T:0.24
Consensus pattern (59 bp):
TCCCAAAAGGTAGAATTCAGATACCATTACATGTCCGGTACCCAACAATGAATGAATCG
Found at i:97540896 original size:32 final size:32
Alignment explanation
Indices: 97540859--97540935 Score: 91
Period size: 32 Copynumber: 2.4 Consensus size: 32
97540849 ATGCATGTGT
* * **
97540859 GTAACTTTTCATCTTCAAGTCTCTTTGCATTA
1 GTAACTTTTCATATTCAAGCCTCTTCACATTA
* * *
97540891 TTAACTCTTCATATTCAAGCCTCTTCACATTC
1 GTAACTTTTCATATTCAAGCCTCTTCACATTA
97540923 GTAACTTTTCATA
1 GTAACTTTTCATA
97540936 ATTTATTTTG
Statistics
Matches: 36, Mismatches: 9, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
32 36 1.00
ACGTcount: A:0.25, C:0.25, G:0.06, T:0.44
Consensus pattern (32 bp):
GTAACTTTTCATATTCAAGCCTCTTCACATTA
Found at i:97555344 original size:69 final size:69
Alignment explanation
Indices: 97555233--97555366 Score: 250
Period size: 69 Copynumber: 1.9 Consensus size: 69
97555223 AAATTATCTA
* *
97555233 TTTATACATAATTCAAATGATGTTCTTGTTTGTTTATATTAAAAATAGACTCATTCAGAATTCTA
1 TTTATACAGAATTCAAATAATGTTCTTGTTTGTTTATATTAAAAATAGACTCATTCAGAATTCTA
97555298 GACC
66 GACC
97555302 TTTATACAGAATTCAAATAATGTTCTTGTTTGTTTATATTAAAAATAGACTCATTCAGAATTCTA
1 TTTATACAGAATTCAAATAATGTTCTTGTTTGTTTATATTAAAAATAGACTCATTCAGAATTCTA
97555367 TACATATAAA
Statistics
Matches: 63, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
69 63 1.00
ACGTcount: A:0.36, C:0.12, G:0.10, T:0.43
Consensus pattern (69 bp):
TTTATACAGAATTCAAATAATGTTCTTGTTTGTTTATATTAAAAATAGACTCATTCAGAATTCTA
GACC
Found at i:97557620 original size:12 final size:12
Alignment explanation
Indices: 97557603--97557640 Score: 67
Period size: 12 Copynumber: 3.2 Consensus size: 12
97557593 AGTACTACCT
97557603 CGGCCTCGTCCA
1 CGGCCTCGTCCA
97557615 CGGCCTCGTCCA
1 CGGCCTCGTCCA
*
97557627 CGGCCTCTTCCA
1 CGGCCTCGTCCA
97557639 CG
1 CG
97557641 AGCGGCTCTT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
12 25 1.00
ACGTcount: A:0.08, C:0.50, G:0.24, T:0.18
Consensus pattern (12 bp):
CGGCCTCGTCCA
Found at i:97559828 original size:114 final size:114
Alignment explanation
Indices: 97559628--97559856 Score: 422
Period size: 114 Copynumber: 2.0 Consensus size: 114
97559618 AGAATAGTCC
*
97559628 ACTACGCACTGAGCAATGTATAACAATAAACTAAATTTCTATAAAGGATTTCTGTAGTAATACTT
1 ACTACGCACTGAGCAATGTATAACAAGAAACTAAATTTCTATAAAGGATTTCTGTAGTAATACTT
*
97559693 TATAGGATAATCTAATAATATTAGAAAATAAATGAAGGAAAGAAAGAAT
66 TATAGAATAATCTAATAATATTAGAAAATAAATGAAGGAAAGAAAGAAT
*
97559742 ACTACGCACTGAGCAATGTATAACAAGAAACTCAATTTCTATAAAGGATTTCTGTAGTAATACTT
1 ACTACGCACTGAGCAATGTATAACAAGAAACTAAATTTCTATAAAGGATTTCTGTAGTAATACTT
*
97559807 TATAGAATAATCTAATAATATTAGAAAATGAATGAAGGAAAGAAAGAAT
66 TATAGAATAATCTAATAATATTAGAAAATAAATGAAGGAAAGAAAGAAT
97559856 A
1 A
97559857 TTATAATTTA
Statistics
Matches: 111, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
114 111 1.00
ACGTcount: A:0.47, C:0.10, G:0.14, T:0.28
Consensus pattern (114 bp):
ACTACGCACTGAGCAATGTATAACAAGAAACTAAATTTCTATAAAGGATTTCTGTAGTAATACTT
TATAGAATAATCTAATAATATTAGAAAATAAATGAAGGAAAGAAAGAAT
Found at i:97566917 original size:26 final size:26
Alignment explanation
Indices: 97566881--97566941 Score: 77
Period size: 26 Copynumber: 2.3 Consensus size: 26
97566871 ATATATTTTC
* *
97566881 TCAAAATTTTACTAGGGGCAAAAAGG
1 TCAAAATTTTACCAGGGGCAAAAACG
* * *
97566907 TCAAAATTTTACCAGTGGTAAAATCG
1 TCAAAATTTTACCAGGGGCAAAAACG
97566933 TCAAAATTT
1 TCAAAATTT
97566942 GTTGGAGGTA
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
26 30 1.00
ACGTcount: A:0.41, C:0.13, G:0.16, T:0.30
Consensus pattern (26 bp):
TCAAAATTTTACCAGGGGCAAAAACG
Found at i:97571052 original size:42 final size:43
Alignment explanation
Indices: 97570978--97571087 Score: 116
Period size: 42 Copynumber: 2.6 Consensus size: 43
97570968 GACTTATGAT
97570978 TTACGTGTAAGACCATGTCAGGGACATCGGCATCG-TAATTGA
1 TTACGTGTAAGACCATGTCAGGGACATCGGCATCGATAATTGA
* * * * *
97571020 TTCCGTGTAAGACCCTGTCTGGGGCAGT-GGCATCGATATTTGA
1 TTACGTGTAAGACCATGTCAGGGACA-TCGGCATCGATAATTGA
* * * *
97571063 TTACATGTAAGGCCACGTCTGGGAC
1 TTACGTGTAAGACCATGTCAGGGAC
97571088 GTTGGCATTG
Statistics
Matches: 55, Mismatches: 11, Indels: 3
0.80 0.16 0.04
Matches are distributed among these distances:
42 29 0.53
43 26 0.47
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (43 bp):
TTACGTGTAAGACCATGTCAGGGACATCGGCATCGATAATTGA
Found at i:97571094 original size:43 final size:43
Alignment explanation
Indices: 97570939--97571095 Score: 142
Period size: 43 Copynumber: 3.7 Consensus size: 43
97570929 TGTGTTTTCC
* * *
97570939 TGTAAGACCACGTCTAGGAAGTTGGCATCGACT-TATGATTTACG
1 TGTAAGACCACGTCTGGGACGTTGGCATCGA-TATTTGA-TTACG
* * * * * *
97570983 TGTAAGACCATGTCAGGGACATCGGCATCG-TAATTGATTCCG
1 TGTAAGACCACGTCTGGGACGTTGGCATCGATATTTGATTACG
* *
97571025 TGTAAGACC-CTGTCTGGGGCAG-TGGCATCGATATTTGATTACA
1 TGTAAGACCAC-GTCTGGGAC-GTTGGCATCGATATTTGATTACG
*
97571068 TGTAAGGCCACGTCTGGGACGTTGGCAT
1 TGTAAGACCACGTCTGGGACGTTGGCAT
97571096 TGTATGAGCT
Statistics
Matches: 88, Mismatches: 19, Indels: 13
0.73 0.16 0.11
Matches are distributed among these distances:
42 29 0.33
43 34 0.39
44 25 0.28
ACGTcount: A:0.24, C:0.20, G:0.28, T:0.28
Consensus pattern (43 bp):
TGTAAGACCACGTCTGGGACGTTGGCATCGATATTTGATTACG
Found at i:97573581 original size:40 final size:40
Alignment explanation
Indices: 97573526--97573601 Score: 116
Period size: 40 Copynumber: 1.9 Consensus size: 40
97573516 CAATCAAAAG
** *
97573526 GGATAAAATTGACCCACCCAGCCCTACACACCAAGTATGA
1 GGATAAAATCAACCCACCCAACCCTACACACCAAGTATGA
*
97573566 GGATAAAATCAACCCATCCAACCCTACACACCAAGT
1 GGATAAAATCAACCCACCCAACCCTACACACCAAGT
97573602 GGTACGTAAT
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
40 32 1.00
ACGTcount: A:0.39, C:0.34, G:0.12, T:0.14
Consensus pattern (40 bp):
GGATAAAATCAACCCACCCAACCCTACACACCAAGTATGA
Found at i:97574068 original size:22 final size:24
Alignment explanation
Indices: 97574020--97574065 Score: 58
Period size: 25 Copynumber: 1.9 Consensus size: 24
97574010 GTAAGGCCCC
* *
97574020 TTCTCTTGCTGCTGTTCAATTTCCG
1 TTCTCTTGCTACTGGT-AATTTCCG
97574045 TTCTCTTGCTACTGGT-ATTTC
1 TTCTCTTGCTACTGGTAATTTC
97574066 GTTTCCTTTC
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 5 0.26
25 14 0.74
ACGTcount: A:0.09, C:0.26, G:0.15, T:0.50
Consensus pattern (24 bp):
TTCTCTTGCTACTGGTAATTTCCG
Found at i:97574092 original size:8 final size:8
Alignment explanation
Indices: 97574079--97574105 Score: 54
Period size: 8 Copynumber: 3.4 Consensus size: 8
97574069 TCCTTTCTCC
97574079 CTCTCTTT
1 CTCTCTTT
97574087 CTCTCTTT
1 CTCTCTTT
97574095 CTCTCTTT
1 CTCTCTTT
97574103 CTC
1 CTC
97574106 ATGCAATCTC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 19 1.00
ACGTcount: A:0.00, C:0.41, G:0.00, T:0.59
Consensus pattern (8 bp):
CTCTCTTT
Found at i:97575540 original size:16 final size:16
Alignment explanation
Indices: 97575519--97575614 Score: 84
Period size: 16 Copynumber: 5.9 Consensus size: 16
97575509 AGTCATAGTG
97575519 ATGTGTGAGCTGTGTA
1 ATGTGTGAGCTGTGTA
*** *
97575535 ATGTGTGAGCTACAATG
1 ATGTGTGAGCT-GTGTA
* *
97575552 ATGTGCGAGTTGTGTA
1 ATGTGTGAGCTGTGTA
** *
97575568 ATGTGCAAGCTATGTA
1 ATGTGTGAGCTGTGTA
*
97575584 ATGTGTGAGTTGTAGTA
1 ATGTGTGAGCTGT-GTA
97575601 ATGTGTGAGCTGTG
1 ATGTGTGAGCTGTG
97575615 AAAATATGCA
Statistics
Matches: 60, Mismatches: 18, Indels: 4
0.73 0.22 0.05
Matches are distributed among these distances:
16 35 0.58
17 25 0.42
ACGTcount: A:0.23, C:0.07, G:0.34, T:0.35
Consensus pattern (16 bp):
ATGTGTGAGCTGTGTA
Found at i:97575554 original size:33 final size:33
Alignment explanation
Indices: 97575482--97575611 Score: 115
Period size: 33 Copynumber: 3.9 Consensus size: 33
97575472 TGCGAGTTGT
*
97575482 AATGATGTGTGAGCTGTGTAAT-TTTCGAG-T-C
1 AATGATGTGTGAGCTGTGTAATGTGT-GAGCTAC
97575513 ATAGTGATGTGTGAGCTGTGTAATGTGTGAGCTAC
1 A-A-TGATGTGTGAGCTGTGTAATGTGTGAGCTAC
* * **
97575548 AATGATGTGCGAGTTGTGTAATGTGCAAGCTA-
1 AATGATGTGTGAGCTGTGTAATGTGTGAGCTAC
** * *
97575580 TGTAATGTGTGAGTTGTAGTAATGTGTGAGCT
1 AATGATGTGTGAGCTGT-GTAATGTGTGAGCT
97575612 GTGAAAATAT
Statistics
Matches: 82, Mismatches: 11, Indels: 10
0.80 0.11 0.10
Matches are distributed among these distances:
31 1 0.01
32 14 0.17
33 61 0.74
34 4 0.05
35 2 0.02
ACGTcount: A:0.24, C:0.08, G:0.32, T:0.36
Consensus pattern (33 bp):
AATGATGTGTGAGCTGTGTAATGTGTGAGCTAC
Found at i:97576418 original size:19 final size:19
Alignment explanation
Indices: 97576374--97576456 Score: 55
Period size: 19 Copynumber: 4.3 Consensus size: 19
97576364 TTAATGATAT
*
97576374 TATAAAAATAAATTAATAA
1 TATAAATATAAATTAATAA
*
97576393 AAT-AATATCAAATTAA-AA
1 TATAAATAT-AAATTAATAA
* **
97576411 TATAAATATTAATTCTTAA
1 TATAAATATAAATTAATAA
*
97576430 TTCATAAATTTAAATATAATAA
1 -T-ATAAATATAAAT-TAATAA
97576452 -ATAAA
1 TATAAA
97576457 CAGTAACCAT
Statistics
Matches: 48, Mismatches: 10, Indels: 12
0.69 0.14 0.17
Matches are distributed among these distances:
18 12 0.25
19 21 0.44
20 1 0.02
21 10 0.21
22 4 0.08
ACGTcount: A:0.60, C:0.04, G:0.00, T:0.36
Consensus pattern (19 bp):
TATAAATATAAATTAATAA
Found at i:97578101 original size:20 final size:20
Alignment explanation
Indices: 97578076--97578130 Score: 83
Period size: 20 Copynumber: 2.8 Consensus size: 20
97578066 TGTGGTTCAA
*
97578076 CTCATTCGAGCTCAAGTTAG
1 CTCATTCGAGCTCAAGTCAG
*
97578096 CTCATTCGTGCTCAAGTCAG
1 CTCATTCGAGCTCAAGTCAG
*
97578116 CTCATTCAAGCTCAA
1 CTCATTCGAGCTCAA
97578131 TTTAACTCGT
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 31 1.00
ACGTcount: A:0.25, C:0.29, G:0.16, T:0.29
Consensus pattern (20 bp):
CTCATTCGAGCTCAAGTCAG
Found at i:97578513 original size:45 final size:45
Alignment explanation
Indices: 97578463--97578611 Score: 235
Period size: 45 Copynumber: 3.3 Consensus size: 45
97578453 GAATGGCATG
*
97578463 AAATTAAGGAAGCATTTGACCAACATCATGCATAATTTGTGGAAC
1 AAATTAAGGAAGCATTTGACCAACATCATGCATAATTTATGGAAC
* *
97578508 AAATTAAGGAAGCATTTGACCAACATCATGCATAATTCATGGAAG
1 AAATTAAGGAAGCATTTGACCAACATCATGCATAATTTATGGAAC
* * *
97578553 AATTTAAGGAAGCATTTGGCCAACATCATGCATAATTTAAGGAAC
1 AAATTAAGGAAGCATTTGACCAACATCATGCATAATTTATGGAAC
*
97578598 AAATTGAGGAAGCA
1 AAATTAAGGAAGCA
97578612 CCATGGCCGA
Statistics
Matches: 94, Mismatches: 10, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
45 94 1.00
ACGTcount: A:0.42, C:0.15, G:0.19, T:0.25
Consensus pattern (45 bp):
AAATTAAGGAAGCATTTGACCAACATCATGCATAATTTATGGAAC
Found at i:97579529 original size:20 final size:20
Alignment explanation
Indices: 97579512--97579567 Score: 103
Period size: 20 Copynumber: 2.8 Consensus size: 20
97579502 AATTGAGCTT
97579512 GAATGAGCTGACTTGAGCAC
1 GAATGAGCTGACTTGAGCAC
97579532 GAATGAGCTGACTTGAGCAC
1 GAATGAGCTGACTTGAGCAC
*
97579552 GAATGAGCTAACTTGA
1 GAATGAGCTGACTTGA
97579568 TATTACTCCA
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 35 1.00
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (20 bp):
GAATGAGCTGACTTGAGCAC
Found at i:97579778 original size:45 final size:45
Alignment explanation
Indices: 97579714--97579874 Score: 313
Period size: 45 Copynumber: 3.6 Consensus size: 45
97579704 TCAAAAAAAA
97579714 ATGCATGATGTTGGCCAAATGCTTCCTCAAATTCTTCCATGAATT
1 ATGCATGATGTTGGCCAAATGCTTCCTCAAATTCTTCCATGAATT
97579759 ATGCATGATGTTGGCCAAATGCTTCCTCAAATTCTTCCATGAATT
1 ATGCATGATGTTGGCCAAATGCTTCCTCAAATTCTTCCATGAATT
97579804 ATGCATGATGTTGGCCAAATGCTTCCTCAAATTCTTCCATGAATT
1 ATGCATGATGTTGGCCAAATGCTTCCTCAAATTCTTCCATGAATT
*
97579849 ATGCATGATGTTGGTCAAATGCTTCC
1 ATGCATGATGTTGGCCAAATGCTTCC
97579875 GTAACCCTTG
Statistics
Matches: 115, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
45 115 1.00
ACGTcount: A:0.26, C:0.22, G:0.17, T:0.35
Consensus pattern (45 bp):
ATGCATGATGTTGGCCAAATGCTTCCTCAAATTCTTCCATGAATT
Found at i:97579992 original size:45 final size:45
Alignment explanation
Indices: 97579943--97580028 Score: 163
Period size: 45 Copynumber: 1.9 Consensus size: 45
97579933 GTGTGGCGTT
97579943 TTCTTCCATGAATTATGCATGATGTTGGCCAAATGCTTCCTCAAA
1 TTCTTCCATGAATTATGCATGATGTTGGCCAAATGCTTCCTCAAA
*
97579988 TTCTTCCATGAATTATGCATGATGTTGGTCAAATGCTTCCT
1 TTCTTCCATGAATTATGCATGATGTTGGCCAAATGCTTCCT
97580029 GGTTCAACTT
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
45 40 1.00
ACGTcount: A:0.24, C:0.21, G:0.16, T:0.38
Consensus pattern (45 bp):
TTCTTCCATGAATTATGCATGATGTTGGCCAAATGCTTCCTCAAA
Found at i:97581528 original size:43 final size:44
Alignment explanation
Indices: 97581453--97581535 Score: 114
Period size: 43 Copynumber: 1.9 Consensus size: 44
97581443 ATTGATACTT
* *
97581453 TTATGTGGTGTAATATTTAGTTATGCACTTGGACAATATTGTTA
1 TTATGTGGTGTAATATCTAATTATGCACTTGGACAATATTGTTA
* * *
97581497 TTATGTGGTGTACTA-CTAATTATGCATTTGGATAATATT
1 TTATGTGGTGTAATATCTAATTATGCACTTGGACAATATT
97581536 ATTAATTTCT
Statistics
Matches: 34, Mismatches: 5, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
43 20 0.59
44 14 0.41
ACGTcount: A:0.28, C:0.07, G:0.19, T:0.46
Consensus pattern (44 bp):
TTATGTGGTGTAATATCTAATTATGCACTTGGACAATATTGTTA
Found at i:97581798 original size:22 final size:20
Alignment explanation
Indices: 97581755--97581793 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
97581745 CAATTTAAAA
97581755 TATAAAAATTTATTAATATG
1 TATAAAAATTTATTAATATG
*
97581775 TATATAAATTTATTAATAT
1 TATAAAAATTTATTAATAT
97581794 ATGTAACAAC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.49, C:0.00, G:0.03, T:0.49
Consensus pattern (20 bp):
TATAAAAATTTATTAATATG
Found at i:97581916 original size:20 final size:21
Alignment explanation
Indices: 97581891--97581931 Score: 75
Period size: 21 Copynumber: 2.0 Consensus size: 21
97581881 AAATATTTTC
97581891 AGTAAATCA-TTTTCCAGAAA
1 AGTAAATCATTTTTCCAGAAA
97581911 AGTAAATCATTTTTCCAGAAA
1 AGTAAATCATTTTTCCAGAAA
97581932 TCATTTTCCG
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 9 0.45
21 11 0.55
ACGTcount: A:0.44, C:0.15, G:0.10, T:0.32
Consensus pattern (21 bp):
AGTAAATCATTTTTCCAGAAA
Found at i:97581934 original size:15 final size:15
Alignment explanation
Indices: 97581914--97581952 Score: 53
Period size: 14 Copynumber: 2.7 Consensus size: 15
97581904 CCAGAAAAGT
97581914 AAATCATTTTTCCAG
1 AAATCATTTTTCCAG
*
97581929 AAATCA-TTTTCCGG
1 AAATCATTTTTCCAG
*
97581943 AAAACATTTT
1 AAATCATTTT
97581953 ACTGGTAAAC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
14 12 0.57
15 9 0.43
ACGTcount: A:0.36, C:0.18, G:0.08, T:0.38
Consensus pattern (15 bp):
AAATCATTTTTCCAG
Found at i:97590731 original size:22 final size:22
Alignment explanation
Indices: 97590705--97590747 Score: 77
Period size: 22 Copynumber: 2.0 Consensus size: 22
97590695 CCGCCATCTT
97590705 TTTTTTATATTTTTTGTTTTTG
1 TTTTTTATATTTTTTGTTTTTG
*
97590727 TTTTTTTTATTTTTTGTTTTT
1 TTTTTTATATTTTTTGTTTTT
97590748 TGCTGCCTCT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.07, C:0.00, G:0.07, T:0.86
Consensus pattern (22 bp):
TTTTTTATATTTTTTGTTTTTG
Found at i:97592133 original size:30 final size:30
Alignment explanation
Indices: 97592099--97592161 Score: 108
Period size: 30 Copynumber: 2.1 Consensus size: 30
97592089 ATTTATTTTA
*
97592099 TTGTTAATTTTCTTATTATTTTAAAGGCAT
1 TTGTTAATTTTCTTATTATTTTAAAAGCAT
*
97592129 TTGTTAATTTTTTTATTATTTTAAAAGCAT
1 TTGTTAATTTTCTTATTATTTTAAAAGCAT
97592159 TTG
1 TTG
97592162 CTTGTTAAGT
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.27, C:0.05, G:0.10, T:0.59
Consensus pattern (30 bp):
TTGTTAATTTTCTTATTATTTTAAAAGCAT
Found at i:97596273 original size:46 final size:44
Alignment explanation
Indices: 97596169--97596276 Score: 144
Period size: 44 Copynumber: 2.4 Consensus size: 44
97596159 TGTCTTTGAC
** * * *
97596169 ATGGACTTACATGAATTATTCCTGTCTCCAATGCCATATATAAT
1 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATATAAT
*
97596213 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATTTCTAAT
1 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATA--TATAAT
97596259 ATGGACTTACATGGCTCA
1 ATGGACTTACATGGCTCA
97596277 TTTCTGTTCT
Statistics
Matches: 56, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
44 33 0.59
46 23 0.41
ACGTcount: A:0.30, C:0.23, G:0.14, T:0.33
Consensus pattern (44 bp):
ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATATAAT
Found at i:97596650 original size:30 final size:30
Alignment explanation
Indices: 97596616--97596673 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
97596606 CCTCGACTCT
**
97596616 AACTTTTTGAAAATTACAATTTTGCCCCTA
1 AACTTTTACAAAATTACAATTTTGCCCCTA
* *
97596646 AACTTTTACATAATTACATTTTTGCCCC
1 AACTTTTACAAAATTACAATTTTGCCCC
97596674 AAGGCTCGGA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.31, C:0.22, G:0.05, T:0.41
Consensus pattern (30 bp):
AACTTTTACAAAATTACAATTTTGCCCCTA
Found at i:97597299 original size:5 final size:5
Alignment explanation
Indices: 97597286--97597358 Score: 64
Period size: 5 Copynumber: 14.6 Consensus size: 5
97597276 TTGTTTTATG
97597286 TATATA TATAA TATAA TATAA TAT-A T-TAA TGATAA TATAA TATAA -A-AA
1 TATA-A TATAA TATAA TATAA TATAA TATAA T-ATAA TATAA TATAA TATAA
* *
97597334 CATAA TCATTAC TATAA TATAA TAT
1 TATAA T-A-TAA TATAA TATAA TAT
97597359 TTTTTTAACA
Statistics
Matches: 57, Mismatches: 3, Indels: 15
0.76 0.04 0.20
Matches are distributed among these distances:
3 3 0.05
4 6 0.11
5 35 0.61
6 10 0.18
7 3 0.05
ACGTcount: A:0.55, C:0.04, G:0.01, T:0.40
Consensus pattern (5 bp):
TATAA
Found at i:97597311 original size:19 final size:19
Alignment explanation
Indices: 97597287--97597329 Score: 70
Period size: 19 Copynumber: 2.3 Consensus size: 19
97597277 TGTTTTATGT
97597287 ATATATATAAT-ATAATATA
1 ATATAT-TAATGATAATATA
97597306 ATATATTAATGATAATATA
1 ATATATTAATGATAATATA
97597325 ATATA
1 ATATA
97597330 AAAACATAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
18 4 0.17
19 19 0.83
ACGTcount: A:0.56, C:0.00, G:0.02, T:0.42
Consensus pattern (19 bp):
ATATATTAATGATAATATA
Found at i:97597339 original size:24 final size:24
Alignment explanation
Indices: 97597293--97597357 Score: 69
Period size: 24 Copynumber: 2.7 Consensus size: 24
97597283 ATGTATATAT
* * *
97597293 ATAATATAATATAATATATTAATG
1 ATAATATAATATAATAAAATAATC
97597317 ATAATATAATATAA-AAACATAATC
1 ATAATATAATATAATAAA-ATAATC
*
97597341 ATTACTATAATATAATA
1 A-TAATATAATATAATA
97597358 TTTTTTTAAC
Statistics
Matches: 34, Mismatches: 4, Indels: 4
0.81 0.10 0.10
Matches are distributed among these distances:
23 2 0.06
24 19 0.56
25 12 0.35
26 1 0.03
ACGTcount: A:0.57, C:0.05, G:0.02, T:0.37
Consensus pattern (24 bp):
ATAATATAATATAATAAAATAATC
Found at i:97601933 original size:5 final size:5
Alignment explanation
Indices: 97601920--97601992 Score: 64
Period size: 5 Copynumber: 14.6 Consensus size: 5
97601910 TTGTTTTATG
97601920 TATATA TATAA TATAA TATAA TAT-A T-TAA TGATAA TATAA TATAA -A-AA
1 TATA-A TATAA TATAA TATAA TATAA TATAA T-ATAA TATAA TATAA TATAA
* *
97601968 CATAA TCATTAC TATAA TATAA TAT
1 TATAA T-A-TAA TATAA TATAA TAT
97601993 TTTTTTAACA
Statistics
Matches: 57, Mismatches: 3, Indels: 15
0.76 0.04 0.20
Matches are distributed among these distances:
3 3 0.05
4 6 0.11
5 35 0.61
6 10 0.18
7 3 0.05
ACGTcount: A:0.55, C:0.04, G:0.01, T:0.40
Consensus pattern (5 bp):
TATAA
Found at i:97601945 original size:19 final size:19
Alignment explanation
Indices: 97601921--97601963 Score: 70
Period size: 19 Copynumber: 2.3 Consensus size: 19
97601911 TGTTTTATGT
97601921 ATATATATAAT-ATAATATA
1 ATATAT-TAATGATAATATA
97601940 ATATATTAATGATAATATA
1 ATATATTAATGATAATATA
97601959 ATATA
1 ATATA
97601964 AAAACATAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
18 4 0.17
19 19 0.83
ACGTcount: A:0.56, C:0.00, G:0.02, T:0.42
Consensus pattern (19 bp):
ATATATTAATGATAATATA
Found at i:97601973 original size:24 final size:24
Alignment explanation
Indices: 97601927--97601991 Score: 69
Period size: 24 Copynumber: 2.7 Consensus size: 24
97601917 ATGTATATAT
* * *
97601927 ATAATATAATATAATATATTAATG
1 ATAATATAATATAATAAAATAATC
97601951 ATAATATAATATAA-AAACATAATC
1 ATAATATAATATAATAAA-ATAATC
*
97601975 ATTACTATAATATAATA
1 A-TAATATAATATAATA
97601992 TTTTTTTAAC
Statistics
Matches: 34, Mismatches: 4, Indels: 4
0.81 0.10 0.10
Matches are distributed among these distances:
23 2 0.06
24 19 0.56
25 12 0.35
26 1 0.03
ACGTcount: A:0.57, C:0.05, G:0.02, T:0.37
Consensus pattern (24 bp):
ATAATATAATATAATAAAATAATC
Found at i:97604591 original size:3 final size:3
Alignment explanation
Indices: 97604580--97604631 Score: 50
Period size: 3 Copynumber: 17.3 Consensus size: 3
97604570 GAAAAAAATG
* * * * * *
97604580 ATA ACA ATA ATA GTA GTA ATA ATA ATA ATA ATG ATA ATG ATA ATA GTA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
97604628 ATA A
1 ATA A
97604632 AAGACTAGAT
Statistics
Matches: 39, Mismatches: 10, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
3 39 1.00
ACGTcount: A:0.58, C:0.02, G:0.10, T:0.31
Consensus pattern (3 bp):
ATA
Found at i:97608411 original size:105 final size:105
Alignment explanation
Indices: 97608229--97608654 Score: 852
Period size: 105 Copynumber: 4.1 Consensus size: 105
97608219 GTAATTTTCT
97608229 ACTAAATATTTTTTTACTAATTTAAAATTCGTAATAATAATACAATTATTTGTTTATAAACAAAG
1 ACTAAATATTTTTTTACTAATTTAAAATTCGTAATAATAATACAATTATTTGTTTATAAACAAAG
97608294 AAACTAATTGTGATTGAATTTTCAATCATTTGAAAATGCA
66 AAACTAATTGTGATTGAATTTTCAATCATTTGAAAATGCA
97608334 ACTAAATATTTTTTTACTAATTTAAAATTCGTAATAATAATACAATTATTTGTTTATAAACAAAG
1 ACTAAATATTTTTTTACTAATTTAAAATTCGTAATAATAATACAATTATTTGTTTATAAACAAAG
97608399 AAACTAATTGTGATTGAATTTTCAATCATTTGAAAATGCA
66 AAACTAATTGTGATTGAATTTTCAATCATTTGAAAATGCA
97608439 ACTAAATATTTTTTTACTAATTTAAAATTCGTAATAATAATACAATTATTTGTTTATAAACAAAG
1 ACTAAATATTTTTTTACTAATTTAAAATTCGTAATAATAATACAATTATTTGTTTATAAACAAAG
97608504 AAACTAATTGTGATTGAATTTTCAATCATTTGAAAATGCA
66 AAACTAATTGTGATTGAATTTTCAATCATTTGAAAATGCA
97608544 ACTAAATATTTTTTTACTAATTTAAAATTCGTAATAATAATACAATTATTTGTTTATAAACAAAG
1 ACTAAATATTTTTTTACTAATTTAAAATTCGTAATAATAATACAATTATTTGTTTATAAACAAAG
97608609 AAACTAATTGTGATTGAATTTTCAATCATTTGAAAATGCA
66 AAACTAATTGTGATTGAATTTTCAATCATTTGAAAATGCA
97608649 ACTAAA
1 ACTAAA
97608655 AATGATACGA
Statistics
Matches: 321, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
105 321 1.00
ACGTcount: A:0.43, C:0.09, G:0.08, T:0.41
Consensus pattern (105 bp):
ACTAAATATTTTTTTACTAATTTAAAATTCGTAATAATAATACAATTATTTGTTTATAAACAAAG
AAACTAATTGTGATTGAATTTTCAATCATTTGAAAATGCA
Done.