Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr3
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 100348136
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 3062571 characters in sequence are not A, C, G, or T
File 283 of 290
Found at i:97615618 original size:27 final size:25
Alignment explanation
Indices: 97615573--97615624 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 25
97615563 TTTTGAGCAA
*
97615573 TTTAATTTTTTTTCTTTTATATTCT
1 TTTAATTTTTTTTCCTTTATATTCT
*
97615598 TTTAACTTTTTTTTCCCTTTATTTTCT
1 TTTAA-TTTTTTTT-CCTTTATATTCT
97615625 ATTCTCTTCT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
25 5 0.22
26 8 0.35
27 10 0.43
ACGTcount: A:0.13, C:0.13, G:0.00, T:0.73
Consensus pattern (25 bp):
TTTAATTTTTTTTCCTTTATATTCT
Found at i:97615620 original size:25 final size:25
Alignment explanation
Indices: 97615573--97615620 Score: 62
Period size: 26 Copynumber: 1.9 Consensus size: 25
97615563 TTTTGAGCAA
**
97615573 TTTAATTTTTTTTCTTTTATATTCT
1 TTTAATTTTTTTTCCCTTATATTCT
97615598 TTTAACTTTTTTTTCCCTT-TATT
1 TTTAA-TTTTTTTTCCCTTATATT
97615621 TTCTATTCTC
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
25 9 0.45
26 11 0.55
ACGTcount: A:0.15, C:0.12, G:0.00, T:0.73
Consensus pattern (25 bp):
TTTAATTTTTTTTCCCTTATATTCT
Found at i:97623564 original size:38 final size:38
Alignment explanation
Indices: 97623508--97623582 Score: 114
Period size: 38 Copynumber: 2.0 Consensus size: 38
97623498 GATGTGTATT
* * * *
97623508 CGGGTTAAATCCCGCAGGCTTCGTGCTGGTATTATATC
1 CGGGATAAATCCCACAGGCCTAGTGCTGGTATTATATC
97623546 CGGGATAAATCCCACAGGCCTAGTGCTGGTATTATAT
1 CGGGATAAATCCCACAGGCCTAGTGCTGGTATTATAT
97623583 TCAGGCCTTC
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
38 33 1.00
ACGTcount: A:0.23, C:0.23, G:0.25, T:0.29
Consensus pattern (38 bp):
CGGGATAAATCCCACAGGCCTAGTGCTGGTATTATATC
Found at i:97623633 original size:43 final size:43
Alignment explanation
Indices: 97623580--97623704 Score: 187
Period size: 43 Copynumber: 2.9 Consensus size: 43
97623570 GCTGGTATTA
* * *
97623580 TATTCAGGCCTTCGTGCCTAACAGACTTAGTGCCGGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTAGTGCCGGTGATGTG
*
97623623 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTAGTGCCGGTGATGTG
* * *
97623666 TATTCGGGCCTTTGTGCCTAGCAGGCGTAATGCCGGTGA
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTAGTGCCGGTGA
97623705 AATGATATGT
Statistics
Matches: 74, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
43 74 1.00
ACGTcount: A:0.14, C:0.24, G:0.32, T:0.30
Consensus pattern (43 bp):
TATTCGGGCCTTCGTGCCTAGCAGGCTTAGTGCCGGTGATGTG
Found at i:97624088 original size:45 final size:42
Alignment explanation
Indices: 97624021--97624128 Score: 128
Period size: 45 Copynumber: 2.5 Consensus size: 42
97624011 TTGACTTGAT
* *
97624021 TATTCGGGCCTTTGAGCTTAGCAAACTATAATGCCGGTGAGATAC
1 TATTCGGGCCTTCGAGCCTAGCAAACTATAATGCCGGT--GA-AC
**
97624066 TATTCGGGCCTTCGAGCCTAGCAGGCTATAATGCCGGTGAAC
1 TATTCGGGCCTTCGAGCCTAGCAAACTATAATGCCGGTGAAC
97624108 TGATATCGGGCC-TCGAGCCTA
1 T-AT-TCGGGCCTTCGAGCCTA
97624129 ACCGGCGAAA
Statistics
Matches: 57, Mismatches: 4, Indels: 6
0.85 0.06 0.09
Matches are distributed among these distances:
42 3 0.05
43 13 0.23
44 7 0.12
45 34 0.60
ACGTcount: A:0.23, C:0.24, G:0.27, T:0.26
Consensus pattern (42 bp):
TATTCGGGCCTTCGAGCCTAGCAAACTATAATGCCGGTGAAC
Found at i:97626180 original size:27 final size:27
Alignment explanation
Indices: 97626097--97626195 Score: 90
Period size: 27 Copynumber: 3.6 Consensus size: 27
97626087 CTTTATAAAA
* * * *
97626097 TTTTATATTTTTTATATTTCTATAATC
1 TTTTATATTTTTTAAATTTTTATATTT
* *
97626124 TTTTACTATTTTTATAAAATTTTACAATTT
1 TTTTA-TATTTTT-TAAATTTTTA-TATTT
*
97626154 TTTTATATTTTTTACATTTTTATATTT
1 TTTTATATTTTTTAAATTTTTATATTT
* *
97626181 TTTTCTAATTTTTAA
1 TTTTATATTTTTTAA
97626196 TAAAATAGGG
Statistics
Matches: 57, Mismatches: 12, Indels: 6
0.76 0.16 0.08
Matches are distributed among these distances:
27 21 0.37
28 15 0.26
29 14 0.25
30 7 0.12
ACGTcount: A:0.27, C:0.06, G:0.00, T:0.67
Consensus pattern (27 bp):
TTTTATATTTTTTAAATTTTTATATTT
Found at i:97626183 original size:19 final size:19
Alignment explanation
Indices: 97626100--97626194 Score: 79
Period size: 19 Copynumber: 5.0 Consensus size: 19
97626090 TATAAAATTT
* *
97626100 TATATTTTTTATATTTCTA
1 TATATTTTTTACATTTTTA
*
97626119 TA-ATCTTTTACTATTTTTA
1 TATATTTTTTAC-ATTTTTA
** *
97626138 TA-AAATTTTACAATTTTTT
1 TATATTTTTTAC-ATTTTTA
97626157 TATATTTTTTACATTTTTA
1 TATATTTTTTACATTTTTA
*
97626176 TATTTTTTTCTA-ATTTTTA
1 TATATTTTT-TACATTTTTA
97626195 ATAAAATAGG
Statistics
Matches: 62, Mismatches: 11, Indels: 6
0.78 0.14 0.08
Matches are distributed among these distances:
18 7 0.11
19 46 0.74
20 9 0.15
ACGTcount: A:0.27, C:0.06, G:0.00, T:0.66
Consensus pattern (19 bp):
TATATTTTTTACATTTTTA
Found at i:97626193 original size:9 final size:9
Alignment explanation
Indices: 97626097--97626183 Score: 54
Period size: 9 Copynumber: 9.4 Consensus size: 9
97626087 CTTTATAAAA
97626097 TTTTATATT
1 TTTTATATT
97626106 TTTTATA-T
1 TTTTATATT
* *
97626114 TTCTATAATC
1 TTTTAT-ATT
97626124 TTTTACTA-T
1 TTTTA-TATT
**
97626133 TTTTATAAAA
1 TTTTAT-ATT
*
97626143 TTTTACAATTT
1 TTTTA-TA-TT
97626154 TTTTATATT
1 TTTTATATT
*
97626163 TTTTACA-T
1 TTTTATATT
97626171 TTTTATATT
1 TTTTATATT
97626180 TTTT
1 TTTT
97626184 TCTAATTTTT
Statistics
Matches: 59, Mismatches: 11, Indels: 16
0.69 0.13 0.19
Matches are distributed among these distances:
8 14 0.24
9 27 0.46
10 12 0.20
11 6 0.10
ACGTcount: A:0.26, C:0.06, G:0.00, T:0.68
Consensus pattern (9 bp):
TTTTATATT
Found at i:97626349 original size:91 final size:87
Alignment explanation
Indices: 97626197--97626424 Score: 298
Period size: 91 Copynumber: 2.5 Consensus size: 87
97626187 AATTTTTAAT
** *
97626197 AAAATAGGGGCTTAATTGCTTTTTTTTTAAAGTTTAAGGGTCTTTTTGATACATTTTGAAAGTTC
1 AAAATAGGGGCTTAATTGCTTTTTTTAAAAAGTTTGAGGG-CTTTTTGATACATTTTGAAAGTTC
*
97626262 AAATAC-CCAATTGAGTGCAAAAA
65 AAAT-CTCCAAATGAGTGCAAAAA
*
97626285 AAAATTAGGAGCTTAATTGCTTTTTTTAAAAAAGGTTTGAGGGCCTTTTTGATACATTTTGAAAG
1 AAAA-TAGGGGCTTAATTGCTTTTTTT-AAAAA-GTTTGAGGG-CTTTTTGATACATTTTGAAAG
*
97626350 TTCAAGTCTCCAAATGAGTGCAAAAA
62 TTCAAATCTCCAAATGAGTGCAAAAA
*
97626376 AAAAGTAGGGGCTTAATTGCATTTTTTCAAAAA-TTGTGAGGGCTTTTTG
1 AAAA-TAGGGGCTTAATTGC-TTTTTTTAAAAAGTT-TGAGGGCTTTTTG
97626425 CACCCTTAAT
Statistics
Matches: 124, Mismatches: 10, Indels: 11
0.86 0.07 0.08
Matches are distributed among these distances:
88 4 0.03
89 30 0.24
90 10 0.08
91 74 0.60
92 6 0.05
ACGTcount: A:0.33, C:0.10, G:0.19, T:0.37
Consensus pattern (87 bp):
AAAATAGGGGCTTAATTGCTTTTTTTAAAAAGTTTGAGGGCTTTTTGATACATTTTGAAAGTTCA
AATCTCCAAATGAGTGCAAAAA
Found at i:97627023 original size:17 final size:18
Alignment explanation
Indices: 97626986--97627029 Score: 56
Period size: 17 Copynumber: 2.5 Consensus size: 18
97626976 ATCTCGAGTA
97626986 ATATTT-TTTTTTATACCT
1 ATATTTGTTTTTTATA-CT
97627004 ATATTTGTTTTTTATA-T
1 ATATTTGTTTTTTATACT
*
97627021 ATATGTGTT
1 ATATTTGTT
97627030 AATTTTCATG
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
17 9 0.38
18 6 0.25
19 9 0.38
ACGTcount: A:0.23, C:0.05, G:0.07, T:0.66
Consensus pattern (18 bp):
ATATTTGTTTTTTATACT
Found at i:97628004 original size:29 final size:31
Alignment explanation
Indices: 97627962--97628023 Score: 83
Period size: 30 Copynumber: 2.1 Consensus size: 31
97627952 AATTAAAAAT
*
97627962 AAAATTAT-ATTTTATCTCTTAAAAATAATA
1 AAAATTATAATTTAATCTCTTAAAAATAATA
* *
97627992 AAAATT-TAATTTAATCTTTTAAAAATTATA
1 AAAATTATAATTTAATCTCTTAAAAATAATA
97628022 AA
1 AA
97628024 GATAGAGGCT
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
29 1 0.04
30 27 0.96
ACGTcount: A:0.52, C:0.05, G:0.00, T:0.44
Consensus pattern (31 bp):
AAAATTATAATTTAATCTCTTAAAAATAATA
Found at i:97630067 original size:32 final size:31
Alignment explanation
Indices: 97630012--97630072 Score: 79
Period size: 32 Copynumber: 1.9 Consensus size: 31
97630002 ATATTGCTAT
* *
97630012 TAAAAAGTATTTTTGATATAAAAA-TATTAC
1 TAAAAAGTATTTTTGAGAGAAAAAGTATTAC
97630042 TAAATAAGTTATTTTTGAGAGAAAAAGTATT
1 TAAA-AAG-TATTTTTGAGAGAAAAAGTATT
97630073 TTTTTCAAAT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
30 4 0.15
31 3 0.12
32 15 0.58
33 4 0.15
ACGTcount: A:0.48, C:0.02, G:0.11, T:0.39
Consensus pattern (31 bp):
TAAAAAGTATTTTTGAGAGAAAAAGTATTAC
Found at i:97631696 original size:17 final size:17
Alignment explanation
Indices: 97631674--97631707 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
97631664 GAACCGTGGT
97631674 GTTAATATTATTAAAAA
1 GTTAATATTATTAAAAA
* *
97631691 GTTAATGTTTTTAAAAA
1 GTTAATATTATTAAAAA
97631708 AATTATTTTT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.47, C:0.00, G:0.09, T:0.44
Consensus pattern (17 bp):
GTTAATATTATTAAAAA
Found at i:97632403 original size:46 final size:46
Alignment explanation
Indices: 97632336--97632427 Score: 184
Period size: 46 Copynumber: 2.0 Consensus size: 46
97632326 CCCCCCCCCC
97632336 CTTAAACCCTTACAGTGACACTGATTCACATAAAAATTGCCAACAA
1 CTTAAACCCTTACAGTGACACTGATTCACATAAAAATTGCCAACAA
97632382 CTTAAACCCTTACAGTGACACTGATTCACATAAAAATTGCCAACAA
1 CTTAAACCCTTACAGTGACACTGATTCACATAAAAATTGCCAACAA
97632428 AAATAAACAA
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
46 46 1.00
ACGTcount: A:0.41, C:0.26, G:0.09, T:0.24
Consensus pattern (46 bp):
CTTAAACCCTTACAGTGACACTGATTCACATAAAAATTGCCAACAA
Found at i:97647377 original size:21 final size:21
Alignment explanation
Indices: 97647332--97647373 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 21
97647322 AATTCTTGTT
97647332 ATAATTTTAATACATTTTTAA
1 ATAATTTTAATACATTTTTAA
*
97647353 ATAATTTTAAT-GATTTTTAA
1 ATAATTTTAATACATTTTTAA
97647373 A
1 A
97647374 ATAAAAAAAT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
20 9 0.45
21 11 0.55
ACGTcount: A:0.43, C:0.02, G:0.02, T:0.52
Consensus pattern (21 bp):
ATAATTTTAATACATTTTTAA
Found at i:97650414 original size:30 final size:30
Alignment explanation
Indices: 97650380--97650440 Score: 104
Period size: 30 Copynumber: 2.0 Consensus size: 30
97650370 CACCTTGTTC
* *
97650380 GCATTCCTGCAGTTTTTTCTTGCTTGAATG
1 GCATTCCTGCAGGTTTTTCTTGCTGGAATG
97650410 GCATTCCTGCAGGTTTTTCTTGCTGGAATG
1 GCATTCCTGCAGGTTTTTCTTGCTGGAATG
97650440 G
1 G
97650441 TCTCTTACTT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.13, C:0.20, G:0.25, T:0.43
Consensus pattern (30 bp):
GCATTCCTGCAGGTTTTTCTTGCTGGAATG
Found at i:97654183 original size:30 final size:30
Alignment explanation
Indices: 97654149--97654211 Score: 117
Period size: 30 Copynumber: 2.1 Consensus size: 30
97654139 AATCTTACCC
*
97654149 AAAGCTTGACCCATATAAATAATGGATCTT
1 AAAGCTTCACCCATATAAATAATGGATCTT
97654179 AAAGCTTCACCCATATAAATAATGGATCTT
1 AAAGCTTCACCCATATAAATAATGGATCTT
97654209 AAA
1 AAA
97654212 TTTTACCTAA
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 32 1.00
ACGTcount: A:0.43, C:0.17, G:0.11, T:0.29
Consensus pattern (30 bp):
AAAGCTTCACCCATATAAATAATGGATCTT
Found at i:97655347 original size:42 final size:42
Alignment explanation
Indices: 97655291--97655378 Score: 167
Period size: 42 Copynumber: 2.1 Consensus size: 42
97655281 ACCCGCAATC
97655291 TTGTTAGAATAAACTACCCCTTTAGTACTCTGTCATTTATTG
1 TTGTTAGAATAAACTACCCCTTTAGTACTCTGTCATTTATTG
*
97655333 TTGTTAGAATAAACTACCCCTTTAGTACTTTGTCATTTATTG
1 TTGTTAGAATAAACTACCCCTTTAGTACTCTGTCATTTATTG
97655375 TTGT
1 TTGT
97655379 AATCCTAGTA
Statistics
Matches: 45, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
42 45 1.00
ACGTcount: A:0.25, C:0.17, G:0.12, T:0.45
Consensus pattern (42 bp):
TTGTTAGAATAAACTACCCCTTTAGTACTCTGTCATTTATTG
Found at i:97656116 original size:26 final size:26
Alignment explanation
Indices: 97656080--97656132 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
97656070 TTTTACATTT
97656080 ACCAATTCATTGAATGCTGTATGATA
1 ACCAATTCATTGAATGCTGTATGATA
97656106 ACCAATTCATTGAATGCTGTATGATA
1 ACCAATTCATTGAATGCTGTATGATA
97656132 A
1 A
97656133 ACGCCTGCAT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.36, C:0.15, G:0.15, T:0.34
Consensus pattern (26 bp):
ACCAATTCATTGAATGCTGTATGATA
Found at i:97658873 original size:17 final size:16
Alignment explanation
Indices: 97658815--97658865 Score: 66
Period size: 17 Copynumber: 3.1 Consensus size: 16
97658805 CAGCATAATG
*
97658815 AAATAAAAAAGAAAATA
1 AAATAATAAAG-AAATA
*
97658832 AAATAATAACAGTAATA
1 AAATAATAA-AGAAATA
97658849 AAATAATAAAGAAATA
1 AAATAATAAAGAAATA
97658865 A
1 A
97658866 TAGTAATACT
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
16 7 0.23
17 21 0.70
18 2 0.07
ACGTcount: A:0.75, C:0.02, G:0.06, T:0.18
Consensus pattern (16 bp):
AAATAATAAAGAAATA
Found at i:97659462 original size:7 final size:7
Alignment explanation
Indices: 97659387--97659517 Score: 58
Period size: 8 Copynumber: 17.9 Consensus size: 7
97659377 AAGGGTTTAA
97659387 AATAAAT
1 AATAAAT
*
97659394 AATACAT
1 AATAAAT
97659401 -ATAAGAT
1 AATAA-AT
*
97659408 AAATATAT
1 -AATAAAT
*
97659416 ATTAAA-
1 AATAAAT
97659422 AATATATAT
1 AATA-A-AT
97659431 AATAAGAT
1 AATAA-AT
*
97659439 AACTTAAT
1 AA-TAAAT
97659447 -ATAAAT
1 AATAAAT
*
97659453 AATGAAT
1 AATAAAT
97659460 AATAAAT
1 AATAAAT
97659467 AATTTAAAT
1 AA--TAAAT
97659476 -ATAGAAT
1 AATA-AAT
97659483 AAT-AA-
1 AATAAAT
*
97659488 AATAAACG
1 AATAAA-T
97659496 AATAAAT
1 AATAAAT
97659503 AAATAAAT
1 -AATAAAT
97659511 AAATAAA
1 -AATAAA
97659518 AAGGGGTTAA
Statistics
Matches: 96, Mismatches: 12, Indels: 31
0.69 0.09 0.22
Matches are distributed among these distances:
5 3 0.03
6 16 0.17
7 30 0.31
8 33 0.34
9 14 0.15
ACGTcount: A:0.64, C:0.02, G:0.04, T:0.30
Consensus pattern (7 bp):
AATAAAT
Found at i:97659474 original size:23 final size:23
Alignment explanation
Indices: 97659443--97659488 Score: 67
Period size: 23 Copynumber: 2.0 Consensus size: 23
97659433 TAAGATAACT
97659443 TAATATAAATA-ATGAATAATAAA
1 TAATATAAATATA-GAATAATAAA
*
97659466 TAATTTAAATATAGAATAATAAA
1 TAATATAAATATAGAATAATAAA
97659489 ATAAACGAAT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
23 20 0.95
24 1 0.05
ACGTcount: A:0.63, C:0.00, G:0.04, T:0.33
Consensus pattern (23 bp):
TAATATAAATATAGAATAATAAA
Found at i:97662115 original size:93 final size:93
Alignment explanation
Indices: 97661987--97662157 Score: 288
Period size: 93 Copynumber: 1.8 Consensus size: 93
97661977 GCCCATAAGT
* * *
97661987 GAACTCGGACTCAACTCAATGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
97662052 CGAGCTCGGATGCCTAGTTACATCTCTC
66 CGAGCTCGGATGCCTAGTTACATCTCTC
* *
97662080 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGTCTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
97662145 CGAGTTCGGATGC
66 CGAGCTCGGATGC
97662158 TCAAATATCC
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.27, C:0.29, G:0.22, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCTC
Found at i:97662154 original size:46 final size:46
Alignment explanation
Indices: 97661979--97662154 Score: 196
Period size: 46 Copynumber: 3.8 Consensus size: 46
97661969 TGTAACCCGC
* * *
97661979 CCATAAGTGAACTCGGACTCAACTCAATGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
*
97662025 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG--ATGC-CTAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGC-A--T
* *** *
97662071 ACATCTCTCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
* *
97662118 CCATAAGTGAACTCGGTCTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
97662155 TGCTCAAATA
Statistics
Matches: 109, Mismatches: 14, Indels: 14
0.80 0.10 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
46 68 0.62
47 32 0.29
49 4 0.04
50 1 0.01
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
Found at i:97664580 original size:15 final size:15
Alignment explanation
Indices: 97664552--97664620 Score: 93
Period size: 15 Copynumber: 4.6 Consensus size: 15
97664542 AGAAAACCGA
97664552 ATAAAGAAATCCAGG
1 ATAAAGAAATCCAGG
* * *
97664567 ATAGAGAAACCCAGA
1 ATAAAGAAATCCAGG
*
97664582 ATAAAGAAATCCAGA
1 ATAAAGAAATCCAGG
*
97664597 ATAAAGAGATCCAGG
1 ATAAAGAAATCCAGG
97664612 ATAAAGAAA
1 ATAAAGAAA
97664621 CCCAAGATAC
Statistics
Matches: 46, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
15 46 1.00
ACGTcount: A:0.57, C:0.13, G:0.19, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAGG
Found at i:97664584 original size:30 final size:30
Alignment explanation
Indices: 97664541--97664629 Score: 99
Period size: 30 Copynumber: 3.0 Consensus size: 30
97664531 CAAAGATAAC
97664541 AAGAAAACC-GAATAAAGAAATCCAGGATA
1 AAGAAAACCAGAATAAAGAAATCCAGGATA
* * *
97664570 GAGAAACCCAGAATAAAGAAATCCAGAATA
1 AAGAAAACCAGAATAAAGAAATCCAGGATA
* * * * *
97664600 AAGAGATCCAGGATAAAGAAACCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAGGATA
97664630 CGATACTATG
Statistics
Matches: 49, Mismatches: 10, Indels: 1
0.82 0.17 0.02
Matches are distributed among these distances:
29 7 0.14
30 42 0.86
ACGTcount: A:0.56, C:0.16, G:0.18, T:0.10
Consensus pattern (30 bp):
AAGAAAACCAGAATAAAGAAATCCAGGATA
Found at i:97664629 original size:15 final size:15
Alignment explanation
Indices: 97664552--97664629 Score: 70
Period size: 15 Copynumber: 5.2 Consensus size: 15
97664542 AGAAAACCGA
*
97664552 ATAAAGAAATCCAGG
1 ATAAAGAAATCCAAG
* *
97664567 ATAGAGAAA-CCCAG
1 ATAAAGAAATCCAAG
97664581 AATAAAGAAATCC-AG
1 -ATAAAGAAATCCAAG
* *
97664596 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
97664612 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
97664627 ATA
1 ATA
97664630 CGATACTATG
Statistics
Matches: 51, Mismatches: 9, Indels: 6
0.77 0.14 0.09
Matches are distributed among these distances:
14 3 0.06
15 45 0.88
16 3 0.06
ACGTcount: A:0.55, C:0.15, G:0.18, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:97667667 original size:93 final size:93
Alignment explanation
Indices: 97667555--97667726 Score: 281
Period size: 93 Copynumber: 1.8 Consensus size: 93
97667545 CGCCCATAAG
* *
97667555 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGAACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGAACTCAACTCA
97667620 ACGAGCTCGGATGCCTAGTTACATCTCT
66 ACGAGCTCGGATGCCTAGTTACATCTCT
* * *
97667648 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCTCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGAACTCAACTCA
* *
97667713 ACGAGTTTGGATGC
66 ACGAGCTCGGATGC
97667727 TCAACCATCC
Statistics
Matches: 72, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.28, C:0.30, G:0.20, T:0.22
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGAACTCAACTCA
ACGAGCTCGGATGCCTAGTTACATCTCT
Found at i:97667719 original size:46 final size:44
Alignment explanation
Indices: 97667548--97667717 Score: 180
Period size: 46 Copynumber: 3.7 Consensus size: 44
97667538 TGTAATCCGC
* *
97667548 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTC-GGCATTC-CAT
* *
97667594 CCATAAGTGAACTCGAACTCAACTCAACGAGCTCGG-ATGCCTAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGCATTCC-A--T
* *** *
97667640 ACATCTCTCGAACTCGGACTCAACTCAACGAGTTCGGACATTCTCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGG-CATTC-CAT
97667687 CCATAAGTGAACTCGGACTCAACTCAACGAG
1 CCATAAGTGAACTCGGACTCAACTCAACGAG
97667718 TTTGGATGCT
Statistics
Matches: 102, Mismatches: 15, Indels: 14
0.78 0.11 0.11
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 2 0.02
46 60 0.59
47 31 0.30
49 4 0.04
50 1 0.01
ACGTcount: A:0.29, C:0.31, G:0.19, T:0.21
Consensus pattern (44 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGCATTCCAT
Found at i:97669977 original size:18 final size:18
Alignment explanation
Indices: 97669935--97669978 Score: 61
Period size: 18 Copynumber: 2.4 Consensus size: 18
97669925 AAGAAACATT
*
97669935 ATCAGAACTAGAATCAAA
1 ATCAGAATTAGAATCAAA
* *
97669953 ATGAGAATTAGAATCAGA
1 ATCAGAATTAGAATCAAA
97669971 ATCAGAAT
1 ATCAGAAT
97669979 CAATATCAGG
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.52, C:0.11, G:0.16, T:0.20
Consensus pattern (18 bp):
ATCAGAATTAGAATCAAA
Found at i:97670164 original size:27 final size:27
Alignment explanation
Indices: 97670127--97670206 Score: 94
Period size: 26 Copynumber: 3.0 Consensus size: 27
97670117 AACATGGCTG
* *
97670127 CCAGAACAGATATTGTGA-TAGAGTCA
1 CCAGAACAGATATTGTGAGCAGAGCCA
97670153 CCAGATACAGATATTGT-AGCAGAGCCA
1 CCAGA-ACAGATATTGTGAGCAGAGCCA
* *
97670180 CCAGAACAGATAATGTG-GCAAAGCCA
1 CCAGAACAGATATTGTGAGCAGAGCCA
97670206 C
1 C
97670207 TTAACAGAAT
Statistics
Matches: 47, Mismatches: 4, Indels: 6
0.82 0.07 0.11
Matches are distributed among these distances:
26 25 0.53
27 22 0.47
ACGTcount: A:0.39, C:0.21, G:0.23, T:0.17
Consensus pattern (27 bp):
CCAGAACAGATATTGTGAGCAGAGCCA
Found at i:97670865 original size:27 final size:27
Alignment explanation
Indices: 97670827--97671075 Score: 261
Period size: 27 Copynumber: 9.3 Consensus size: 27
97670817 AAACAGTAAT
* * *
97670827 GGTAATTTTACCCCACAAGGGTATCTC
1 GGTAATTCTACCCTACAAGGGTATTTC
97670854 GGTAATTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* * * *
97670881 AGTAATTCTACCCTATAGGGGCATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* * *
97670908 AGTAATTCTACCCTA-TAGTGGTATTTT
1 GGTAATTCTACCCTACAAG-GGTATTTC
*
97670935 GGT-ATTGCTACCCTATAAGGGTATTTC
1 GGTAATT-CTACCCTACAAGGGTATTTC
* * *
97670962 GGTATTTCTATCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* * *
97670989 AGTAATTCTATCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* * *
97671016 AGTATTTCTACCCTACAAGGG-AATTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
97671042 GGTATTTCTACCCTACAAGGGTATTTT
1 GGTAATTCTACCCTACAAGGGTATTTC
97671069 GGTAATT
1 GGTAATT
97671076 TTACAAATTG
Statistics
Matches: 189, Mismatches: 28, Indels: 10
0.83 0.12 0.04
Matches are distributed among these distances:
26 28 0.15
27 157 0.83
28 4 0.02
ACGTcount: A:0.25, C:0.20, G:0.19, T:0.37
Consensus pattern (27 bp):
GGTAATTCTACCCTACAAGGGTATTTC
Found at i:97671094 original size:80 final size:81
Alignment explanation
Indices: 97670861--97671099 Score: 214
Period size: 81 Copynumber: 3.0 Consensus size: 81
97670851 CTCGGTAATT
* * * * * * * ** *
97670861 CTACCCTACAAGGGTATTTCAGTAATTCTACCCTATAGGGGCATTTCAGTAATTCTACCCTATAG
1 CTACCCTACAAGGGTAATTCGGTATTTCTACCCTACAAGGGTATTTCAGTAATTCTATCAAACAG
**
97670926 TGG-TATTTTGGTATTG
66 -GGATATTTCAGTATTG
* * * * **
97670942 CTACCCTATAAGGGTATTTCGGTATTTCTATCCTACAGGGGTATTTCAGTAATTCTATCCTACAG
1 CTACCCTACAAGGGTAATTCGGTATTTCTACCCTACAAGGGTATTTCAGTAATTCTATCAAACAG
* *
97671007 GGGTATTTCAGTATTT
66 GGATATTTCAGTATTG
** * **
97671023 CTACCCTACAAGGG-AATTCGGTATTTCTACCCTACAAGGGTATTTTGGTAATTTTA-CAAATTG
1 CTACCCTACAAGGGTAATTCGGTATTTCTACCCTACAAGGGTATTTCAGTAATTCTATCAAACAG
97671086 AGGATATTTCAGTA
66 -GGATATTTCAGTA
97671100 ATTTTACAAT
Statistics
Matches: 133, Mismatches: 23, Indels: 5
0.83 0.14 0.03
Matches are distributed among these distances:
79 3 0.02
80 50 0.38
81 80 0.60
ACGTcount: A:0.26, C:0.18, G:0.18, T:0.37
Consensus pattern (81 bp):
CTACCCTACAAGGGTAATTCGGTATTTCTACCCTACAAGGGTATTTCAGTAATTCTATCAAACAG
GGATATTTCAGTATTG
Found at i:97671126 original size:26 final size:27
Alignment explanation
Indices: 97671063--97671241 Score: 186
Period size: 27 Copynumber: 6.7 Consensus size: 27
97671053 CCTACAAGGG
* *
97671063 TATTTTGGTAATTTTACAAATTGAGGA
1 TATTTCGGTAATTTTACAAATCGAGGA
* * *
97671090 TATTTCAGTAATTTTAC-AATCAATGA
1 TATTTCGGTAATTTTACAAATCGAGGA
*
97671116 TATTTCGGTAATTTTACAAATCGAGGG
1 TATTTCGGTAATTTTACAAATCGAGGA
*
97671143 TATTTCAGTAATTTTAC-AATCGACGG-
1 TATTTCGGTAATTTTACAAATCGA-GGA
*
97671169 TATTTCGGTAATTTTACAAATCAAGGA
1 TATTTCGGTAATTTTACAAATCGAGGA
* * * * * *
97671196 TATTTGGGTAGTTTTATAAACCGGGGG
1 TATTTCGGTAATTTTACAAATCGAGGA
97671223 TACTTT-GGTAATTTTACAA
1 TA-TTTCGGTAATTTTACAA
97671242 CTGGGGGTAT
Statistics
Matches: 126, Mismatches: 21, Indels: 10
0.80 0.13 0.06
Matches are distributed among these distances:
26 46 0.37
27 77 0.61
28 3 0.02
ACGTcount: A:0.32, C:0.10, G:0.18, T:0.40
Consensus pattern (27 bp):
TATTTCGGTAATTTTACAAATCGAGGA
Found at i:97671211 original size:53 final size:53
Alignment explanation
Indices: 97671061--97671200 Score: 217
Period size: 53 Copynumber: 2.6 Consensus size: 53
97671051 ACCCTACAAG
* * *
97671061 GGTATTTTGGTAATTTTACAAATTGAGGATATTTCAGTAATTTTACAATCAAT
1 GGTATTTCGGTAATTTTACAAATCGAGGATATTTCAGTAATTTTACAATCAAC
* * *
97671114 GATATTTCGGTAATTTTACAAATCGAGGGTATTTCAGTAATTTTACAATCGAC
1 GGTATTTCGGTAATTTTACAAATCGAGGATATTTCAGTAATTTTACAATCAAC
*
97671167 GGTATTTCGGTAATTTTACAAATCAAGGATATTT
1 GGTATTTCGGTAATTTTACAAATCGAGGATATTT
97671201 GGGTAGTTTT
Statistics
Matches: 78, Mismatches: 9, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
53 78 1.00
ACGTcount: A:0.33, C:0.10, G:0.16, T:0.41
Consensus pattern (53 bp):
GGTATTTCGGTAATTTTACAAATCGAGGATATTTCAGTAATTTTACAATCAAC
Found at i:97671211 original size:80 final size:78
Alignment explanation
Indices: 97671059--97671262 Score: 232
Period size: 80 Copynumber: 2.6 Consensus size: 78
97671049 CTACCCTACA
* *
97671059 AGGGTATTTTGGTAATTTTACAAATTGAGGATATTTCAGTAATTTTACAATCAATGATATTTCGG
1 AGGGTA-TTTGGTAATTTTAC-AATCGAGGATATTTCAGTAATTTTACAATCAAGGATATTTCGG
*
97671124 TAATTTTACAAATCG
64 TAATTTTACAAACCG
* * *
97671139 AGGGTATTTCAGTAATTTTACAATCGACGG-TATTTCGGTAATTTTACAAATCAAGGATATTTGG
1 AGGGTATTT-GGTAATTTTACAATCGA-GGATATTTCAGTAATTTTAC-AATCAAGGATATTTCG
* *
97671203 GTAGTTTTATAAACCG
63 GTAATTTTACAAACCG
* * *
97671219 GGGGTACTTTGGTAATTTTACAA-CTGGGGGTATTTCAGTAATTT
1 AGGGTA-TTTGGTAATTTTACAATC-GAGGATATTTCAGTAATTT
97671263 GGTAAACTAA
Statistics
Matches: 106, Mismatches: 12, Indels: 12
0.82 0.09 0.09
Matches are distributed among these distances:
79 27 0.25
80 76 0.72
81 3 0.03
ACGTcount: A:0.30, C:0.10, G:0.20, T:0.40
Consensus pattern (78 bp):
AGGGTATTTGGTAATTTTACAATCGAGGATATTTCAGTAATTTTACAATCAAGGATATTTCGGTA
ATTTTACAAACCG
Found at i:97671259 original size:26 final size:26
Alignment explanation
Indices: 97671059--97671262 Score: 178
Period size: 27 Copynumber: 7.7 Consensus size: 26
97671049 CTACCCTACA
* *
97671059 AGGGTATTTTGGTAATTTTACAAATTG
1 AGGGTATTTCGGTAATTTTAC-AATCG
* * *
97671086 AGGATATTTCAGTAATTTTACAATCA
1 AGGGTATTTCGGTAATTTTACAATCG
* *
97671112 ATGATATTTCGGTAATTTTACAAATCG
1 AGGGTATTTCGGTAATTTTAC-AATCG
*
97671139 AGGGTATTTCAGTAATTTTACAATCG
1 AGGGTATTTCGGTAATTTTACAATCG
* *
97671165 ACGGTATTTCGGTAATTTTACAAATCA
1 AGGGTATTTCGGTAATTTTAC-AATCG
* * * * *
97671192 AGGATATTTGGGTAGTTTTATAAACCG
1 AGGGTATTTCGGTAATTTTA-CAATCG
*
97671219 GGGGTACTTT-GGTAATTTTACAA-CTG
1 AGGGTA-TTTCGGTAATTTTACAATC-G
* *
97671245 GGGGTATTTCAGTAATTT
1 AGGGTATTTCGGTAATTT
97671263 GGTAAACTAA
Statistics
Matches: 145, Mismatches: 26, Indels: 13
0.79 0.14 0.07
Matches are distributed among these distances:
25 4 0.03
26 62 0.43
27 76 0.52
28 3 0.02
ACGTcount: A:0.30, C:0.10, G:0.20, T:0.40
Consensus pattern (26 bp):
AGGGTATTTCGGTAATTTTACAATCG
Found at i:97673227 original size:18 final size:17
Alignment explanation
Indices: 97673199--97673232 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
97673189 GGCCTTAGCC
97673199 CATTACAGAATAAGAAA
1 CATTACAGAATAAGAAA
*
97673216 CATTATCAGAATTAGAA
1 CATTA-CAGAATAAGAA
97673233 TCAAAATGAG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 5 0.33
18 10 0.67
ACGTcount: A:0.53, C:0.12, G:0.12, T:0.24
Consensus pattern (17 bp):
CATTACAGAATAAGAAA
Found at i:97673244 original size:18 final size:18
Alignment explanation
Indices: 97673223--97673257 Score: 70
Period size: 18 Copynumber: 1.9 Consensus size: 18
97673213 AAACATTATC
97673223 AGAATTAGAATCAAAATG
1 AGAATTAGAATCAAAATG
97673241 AGAATTAGAATCAAAAT
1 AGAATTAGAATCAAAAT
97673258 CAGGTGACAG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.57, C:0.06, G:0.14, T:0.23
Consensus pattern (18 bp):
AGAATTAGAATCAAAATG
Found at i:97673275 original size:25 final size:25
Alignment explanation
Indices: 97673241--97673303 Score: 99
Period size: 25 Copynumber: 2.5 Consensus size: 25
97673231 AATCAAAATG
97673241 AGAATTAGAATCAAAATCAGGTGAC
1 AGAATTAGAATCAAAATCAGGTGAC
* * *
97673266 AGAATCAGAATCAATATCAGGTGAT
1 AGAATTAGAATCAAAATCAGGTGAC
97673291 AGAATTAGAATCA
1 AGAATTAGAATCA
97673304 GAATGTGAAT
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
25 34 1.00
ACGTcount: A:0.48, C:0.11, G:0.19, T:0.22
Consensus pattern (25 bp):
AGAATTAGAATCAAAATCAGGTGAC
Found at i:97673502 original size:26 final size:27
Alignment explanation
Indices: 97673449--97673504 Score: 69
Period size: 26 Copynumber: 2.1 Consensus size: 27
97673439 ATGATAGAGT
* * *
97673449 CACCAGATACAGATATTGTAGCAGAGC
1 CACCAGATACAGAGAATGTAGCAAAGC
*
97673476 CACCAGA-ACAGAGAATGTGGCAAAGC
1 CACCAGATACAGAGAATGTAGCAAAGC
97673502 CAC
1 CAC
97673505 TTAACAGAAT
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
26 18 0.72
27 7 0.28
ACGTcount: A:0.39, C:0.25, G:0.23, T:0.12
Consensus pattern (27 bp):
CACCAGATACAGAGAATGTAGCAAAGC
Found at i:97673697 original size:22 final size:22
Alignment explanation
Indices: 97673663--97673728 Score: 71
Period size: 22 Copynumber: 3.0 Consensus size: 22
97673653 GCAAATACGT
*
97673663 TTGGCACACAGCCATAATCAGA
1 TTGGCACAAAGCCATAATCAGA
* * * *
97673685 TTGGCATAGAGCCAT-ATGTAGG
1 TTGGCACAAAGCCATAAT-CAGA
97673707 TTGGCACAAAGCCATAATCAGA
1 TTGGCACAAAGCCATAATCAGA
97673729 AGACTTTAAG
Statistics
Matches: 34, Mismatches: 8, Indels: 4
0.74 0.17 0.09
Matches are distributed among these distances:
21 2 0.06
22 30 0.88
23 2 0.06
ACGTcount: A:0.35, C:0.21, G:0.23, T:0.21
Consensus pattern (22 bp):
TTGGCACAAAGCCATAATCAGA
Found at i:97674039 original size:27 final size:27
Alignment explanation
Indices: 97674009--97674262 Score: 228
Period size: 27 Copynumber: 9.4 Consensus size: 27
97673999 GGGGCAAAAT
* *
97674009 GGTAATTTTACCCCACAAGGGTATCTC
1 GGTAATTTTACCCTACAAGGGTATTTC
*
97674036 GGTAATTCTACCCTACAAGGGTATTTC
1 GGTAATTTTACCCTACAAGGGTATTTC
* * * * * *
97674063 GGTAATTCTATCCTATAGGGGCATTTT
1 GGTAATTTTACCCTACAAGGGTATTTC
** * *
97674090 AATAATTCTACCCTACAGGGGTATTTC
1 GGTAATTTTACCCTACAAGGGTATTTC
* *
97674117 GGT-ATTTCTATCCTACACGGGTATTTC
1 GGTAATTT-TACCCTACAAGGGTATTTC
* *
97674144 GGT-ATTTCTATCCTACAGGGGTATTTC
1 GGTAATTT-TACCCTACAAGGGTATTTC
* * * * *
97674171 AGTAATTCTACCTTATAGGGGTATTTC
1 GGTAATTTTACCCTACAAGGGTATTTC
* *
97674198 GAT-ATTTCTACCCTATAAGGGTATTTC
1 GGTAATTT-TACCCTACAAGGGTATTTC
97674225 GGT-ATTTCTACCCTACAAGGGTATTTC
1 GGTAATTT-TACCCTACAAGGGTATTTC
97674252 GGTAATTTTAC
1 GGTAATTTTAC
97674263 AAATTGAAGG
Statistics
Matches: 191, Mismatches: 32, Indels: 8
0.83 0.14 0.03
Matches are distributed among these distances:
26 6 0.03
27 178 0.93
28 7 0.04
ACGTcount: A:0.24, C:0.20, G:0.19, T:0.38
Consensus pattern (27 bp):
GGTAATTTTACCCTACAAGGGTATTTC
Found at i:97674068 original size:54 final size:54
Alignment explanation
Indices: 97674009--97674258 Score: 252
Period size: 54 Copynumber: 4.6 Consensus size: 54
97673999 GGGGCAAAAT
* *
97674009 GGTAATTTTACCCCACAAGGGTATCTCGGTAATTCTACCCTACAAGGGTATTTC
1 GGTAATTTTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAAGGGTATTTC
* * * * * *** *
97674063 GGTAATTCTATCCTATAGGGGCATTTTAATAATTCTACCCTACAGGGGTATTTC
1 GGTAATTTTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAAGGGTATTTC
* * * * *
97674117 GGT-ATTTCTATCCTACACGGGTATTTCGGTATTTCTATCCTACAGGGGTATTTC
1 GGTAATTT-TACCCTACAAGGGTATTTCGGTAATTCTACCCTACAAGGGTATTTC
* * * * * * * *
97674171 AGTAATTCTACCTTATAGGGGTATTTCGATATTTCTACCCTATAAGGGTATTTC
1 GGTAATTTTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAAGGGTATTTC
97674225 GGT-ATTTCTACCCTACAAGGGTATTTCGGTAATT
1 GGTAATTT-TACCCTACAAGGGTATTTCGGTAATT
97674259 TTACAAATTG
Statistics
Matches: 156, Mismatches: 37, Indels: 6
0.78 0.19 0.03
Matches are distributed among these distances:
53 6 0.04
54 147 0.94
55 3 0.02
ACGTcount: A:0.24, C:0.20, G:0.19, T:0.38
Consensus pattern (54 bp):
GGTAATTTTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAAGGGTATTTC
Found at i:97674257 original size:81 final size:81
Alignment explanation
Indices: 97674010--97674258 Score: 327
Period size: 81 Copynumber: 3.1 Consensus size: 81
97674000 GGGCAAAATG
* * * * * *
97674010 GTAATTTTACCCCACAAGGGTATCTCGGTAATTCTACCCTACAAGGGTATTTCGGTAATTCTATC
1 GTAATTCTACCCTACAGGGGTATTTCGGTATTTCTACCCTACAAGGGTATTTCGGTATTTCTATC
* * *
97674075 CTATAGGGGCATTTTA
66 CTACAGGGGTATTTCA
* * *
97674091 ATAATTCTACCCTACAGGGGTATTTCGGTATTTCTATCCTACACGGGTATTTCGGTATTTCTATC
1 GTAATTCTACCCTACAGGGGTATTTCGGTATTTCTACCCTACAAGGGTATTTCGGTATTTCTATC
97674156 CTACAGGGGTATTTCA
66 CTACAGGGGTATTTCA
* * * * *
97674172 GTAATTCTACCTTATAGGGGTATTTCGATATTTCTACCCTATAAGGGTATTTCGGTATTTCTACC
1 GTAATTCTACCCTACAGGGGTATTTCGGTATTTCTACCCTACAAGGGTATTTCGGTATTTCTATC
* *
97674237 CTACAAGGGTATTTCG
66 CTACAGGGGTATTTCA
97674253 GTAATT
1 GTAATT
97674259 TTACAAATTG
Statistics
Matches: 146, Mismatches: 22, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
81 146 1.00
ACGTcount: A:0.24, C:0.20, G:0.18, T:0.38
Consensus pattern (81 bp):
GTAATTCTACCCTACAGGGGTATTTCGGTATTTCTACCCTACAAGGGTATTTCGGTATTTCTATC
CTACAGGGGTATTTCA
Found at i:97674274 original size:27 final size:27
Alignment explanation
Indices: 97674244--97674424 Score: 129
Period size: 27 Copynumber: 6.8 Consensus size: 27
97674234 ACCCTACAAG
97674244 GGTATTTCGGTAATTTTACAAATTGAA
1 GGTATTTCGGTAATTTTACAAATTGAA
* *
97674271 GGTATTTCAGTAATTTTAC-AA-TCAA
1 GGTATTTCGGTAATTTTACAAATTGAA
* * * *
97674296 TGATATTTCGGCAATTTTACAAATCGAG
1 -GGTATTTCGGTAATTTTACAAATTGAA
* *
97674324 GGTATTTCAGTAATTTTAC-AATTGAC
1 GGTATTTCGGTAATTTTACAAATTGAA
** * **
97674350 GGTATTTCAATAAATTTACAAA-ACAA
1 GGTATTTCGGTAATTTTACAAATTGAA
* * * * **
97674376 GGATATTTGGGTAGTTTTATAAACTGGG
1 GG-TATTTCGGTAATTTTACAAATTGAA
97674404 GGTACTTT-GGTAATTTTACAA
1 GGTA-TTTCGGTAATTTTACAA
97674425 CTGGCGGTAT
Statistics
Matches: 117, Mismatches: 30, Indels: 14
0.73 0.19 0.09
Matches are distributed among these distances:
25 3 0.03
26 43 0.37
27 65 0.56
28 6 0.05
ACGTcount: A:0.34, C:0.10, G:0.18, T:0.39
Consensus pattern (27 bp):
GGTATTTCGGTAATTTTACAAATTGAA
Found at i:97674275 original size:54 final size:54
Alignment explanation
Indices: 97674109--97674335 Score: 144
Period size: 54 Copynumber: 4.2 Consensus size: 54
97674099 ACCCTACAGG
* * * ** ** *
97674109 GGTATTTCGGTATTTCTATCCTACACGGGTATTTCGGTATTTCTATCCTACAG-G
1 GGTATTTCAGTATTTCTACCCTACAAGGGTATTTCGGTATTTCTA-CAAATTGAA
* * * * * **
97674163 GGTATTTCAGTAATTCTACCTTATAGGGGTATTTCGATATTTCTAC-CCTAT-AA
1 GGTATTTCAGTATTTCTACCCTACAAGGGTATTTCGGTATTTCTACAAAT-TGAA
*
97674216 GGGTATTTCGGTATTTCTACCCTACAAGGGTATTTCGGTAATTT-TACAAATTGAA
1 -GGTATTTCAGTATTTCTACCCTACAAGGGTATTTCGGT-ATTTCTACAAATTGAA
** * * * * *
97674271 GGTATTTCAGTAATTT-TACAAT-CAATGATATTTCGGCAATTT-TACAAATCGAG
1 GGTATTTCAGT-ATTTCTACCCTACAAGGGTATTTCGG-TATTTCTACAAATTGAA
97674324 GGTATTTCAGTA
1 GGTATTTCAGTA
97674336 ATTTTACAAT
Statistics
Matches: 137, Mismatches: 28, Indels: 18
0.75 0.15 0.10
Matches are distributed among these distances:
52 1 0.01
53 37 0.27
54 88 0.64
55 11 0.08
ACGTcount: A:0.26, C:0.16, G:0.18, T:0.40
Consensus pattern (54 bp):
GGTATTTCAGTATTTCTACCCTACAAGGGTATTTCGGTATTTCTACAAATTGAA
Found at i:97674368 original size:53 final size:53
Alignment explanation
Indices: 97674244--97674371 Score: 166
Period size: 53 Copynumber: 2.4 Consensus size: 53
97674234 ACCCTACAAG
* *
97674244 GGTATTTCGGTAATTTTACAAATTGAAGGTATTTCAGTAATTTTACAATCAAT
1 GGTATTTCGGTAATTTTACAAATCGAAGGTATTTCAGTAATTTTACAATCAAC
* * * **
97674297 GATATTTCGGCAATTTTACAAATCGAGGGTATTTCAGTAATTTTACAATTGAC
1 GGTATTTCGGTAATTTTACAAATCGAAGGTATTTCAGTAATTTTACAATCAAC
** *
97674350 GGTATTTCAATAAATTTACAAA
1 GGTATTTCGGTAATTTTACAAA
97674372 ACAAGGATAT
Statistics
Matches: 63, Mismatches: 12, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
53 63 1.00
ACGTcount: A:0.35, C:0.11, G:0.15, T:0.39
Consensus pattern (53 bp):
GGTATTTCGGTAATTTTACAAATCGAAGGTATTTCAGTAATTTTACAATCAAC
Found at i:97674381 original size:80 final size:79
Alignment explanation
Indices: 97674242--97674436 Score: 223
Period size: 80 Copynumber: 2.4 Consensus size: 79
97674232 CTACCCTACA
* * * * *
97674242 AGGGTATTTCGGTAATTTTACAAATTGAAGGTATTTCAGTAATTTTACAATCAATGATATTTCGG
1 AGGGTATTTCGGTAATTTTAC-AATTGACGGTATTTCAATAAATTTACAAACAAGGATATTTCGG
97674307 CAATTTTACAAA-TCG
65 CAATTTTACAAACT-G
* *
97674322 AGGGTATTTCAGTAATTTTACAATTGACGGTATTTCAATAAATTTACAAAACAAGGATATTTGGG
1 AGGGTATTTCGGTAATTTTACAATTGACGGTATTTCAATAAATTTAC-AAACAAGGATATTTCGG
* * *
97674387 TAGTTTTATAAACTG
65 CAATTTTACAAACTG
* * *
97674402 GGGGTACTTT-GGTAATTTTACAACTGGCGGTATTT
1 AGGGTA-TTTCGGTAATTTTACAATTGACGGTATTT
97674437 TAGTAATTTG
Statistics
Matches: 98, Mismatches: 14, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
79 23 0.23
80 71 0.72
81 4 0.04
ACGTcount: A:0.32, C:0.10, G:0.19, T:0.38
Consensus pattern (79 bp):
AGGGTATTTCGGTAATTTTACAATTGACGGTATTTCAATAAATTTACAAACAAGGATATTTCGGC
AATTTTACAAACTG
Found at i:97674383 original size:53 final size:52
Alignment explanation
Indices: 97674269--97674383 Score: 122
Period size: 53 Copynumber: 2.2 Consensus size: 52
97674259 TTACAAATTG
* ** * *
97674269 AAGGTATTTCAGTAATTTTACAATCAATGATATTTCGGCAATTTTACAAATC
1 AAGGTATTTCAGTAATTTTACAATCAACGATATTTCAACAAATTTACAAAAC
* ** * *
97674321 GAGGGTATTTCAGTAATTTTACAATTGACGGTATTTCAATAAATTTACAAAAC
1 -AAGGTATTTCAGTAATTTTACAATCAACGATATTTCAACAAATTTACAAAAC
97674374 AAGGATATTT
1 AAGG-TATTT
97674384 GGGTAGTTTT
Statistics
Matches: 50, Mismatches: 11, Indels: 2
0.79 0.17 0.03
Matches are distributed among these distances:
52 3 0.06
53 47 0.94
ACGTcount: A:0.37, C:0.11, G:0.14, T:0.37
Consensus pattern (52 bp):
AAGGTATTTCAGTAATTTTACAATCAACGATATTTCAACAAATTTACAAAAC
Found at i:97680546 original size:46 final size:46
Alignment explanation
Indices: 97680478--97680568 Score: 128
Period size: 46 Copynumber: 2.0 Consensus size: 46
97680468 TATATATACA
* * *
97680478 CATCTCATACATATCTCACATTAGCCATTTGGCTTTACCACATATC
1 CATCTCATACACATCTCACATTAACCATTCGGCTTTACCACATATC
* * *
97680524 CATCTCATACACATTTCGCATTAACCATTCGGCTTTCCCACATAT
1 CATCTCATACACATCTCACATTAACCATTCGGCTTTACCACATAT
97680569 ATACACTTCC
Statistics
Matches: 39, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
46 39 1.00
ACGTcount: A:0.27, C:0.32, G:0.07, T:0.34
Consensus pattern (46 bp):
CATCTCATACACATCTCACATTAACCATTCGGCTTTACCACATATC
Found at i:97680613 original size:47 final size:47
Alignment explanation
Indices: 97680582--97680873 Score: 440
Period size: 47 Copynumber: 6.2 Consensus size: 47
97680572 CACTTCCACG
*
97680582 TTCATCACATTGGCCATTCTGCCTTATCACATATATGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
* * *
97680629 TTTATCACATTGGCCATTCGGCCTTATCACATATGTGCATGTTCATA
1 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
*
97680676 TTCATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
* *
97680723 TTCATCACATTGGCCATTCGGCCTTATCACATATGTACATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
* *
97680770 TTCATCACATTGGCCATTCGGCCTTATCACACAAATGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
* * * * **
97680817 TTCATCACATTTGCCATTCGGCCTTAGCTCATATATACACATTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
*
97680864 TCCATCACAT
1 TTCATCACAT
97680874 AAAATCCTAA
Statistics
Matches: 221, Mismatches: 24, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
47 221 1.00
ACGTcount: A:0.26, C:0.28, G:0.12, T:0.34
Consensus pattern (47 bp):
TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
Found at i:97680661 original size:94 final size:94
Alignment explanation
Indices: 97680548--97680873 Score: 465
Period size: 94 Copynumber: 3.5 Consensus size: 94
97680538 TTCGCATTAA
* ** * * *
97680548 CCATTCGGCTTTCCCACATATATACACT-TCCACGTTCATCACATTGGCCATTCTGCCTTATCAC
1 CCATTCGGCCTTATCACATATATACA-TGTTCACATTCATCACATTGGCCATTCGGCCTTATCAC
* *
97680612 ATATATGCATGTTCACATTTATCACATTGG
65 ACATATGCATGTTCACATTCATCACATTGG
* * *
97680642 CCATTCGGCCTTATCACATATGTGCATGTTCATATTCATCACATTGGCCATTCGGCCTTATCACA
1 CCATTCGGCCTTATCACATATATACATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACA
97680707 CATATGCATGTTCACATTCATCACATTGG
66 CATATGCATGTTCACATTCATCACATTGG
*
97680736 CCATTCGGCCTTATCACATATGTACATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACA
1 CCATTCGGCCTTATCACATATATACATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACA
* *
97680801 CAAATGCATGTTCACATTCATCACATTTG
66 CATATGCATGTTCACATTCATCACATTGG
* * ** *
97680830 CCATTCGGCCTTAGCTCATATATACACATTCACATCCATCACAT
1 CCATTCGGCCTTATCACATATATACATGTTCACATTCATCACAT
97680874 AAAATCCTAA
Statistics
Matches: 210, Mismatches: 21, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
93 1 0.00
94 209 1.00
ACGTcount: A:0.26, C:0.29, G:0.11, T:0.33
Consensus pattern (94 bp):
CCATTCGGCCTTATCACATATATACATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACA
CATATGCATGTTCACATTCATCACATTGG
Found at i:97680862 original size:141 final size:140
Alignment explanation
Indices: 97680548--97680873 Score: 454
Period size: 141 Copynumber: 2.3 Consensus size: 140
97680538 TTCGCATTAA
* ** * *
97680548 CCATTCGGCTTTCCCACATATATACACTTCCACGTTCATCACATTGGCCATTCTGCCTTATCACA
1 CCATTCGGCCTTAGCACATATATACACTT-CACATTCATCACATTGGCCATTCGGCCTTATCACA
* * * ** *
97680613 TATATGCATGTTCACATTTATCACATTGGCCATTCGGCCTTATCACATATGTGCATGTTCATATT
65 TATATACATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACAAATGCATGTTCACATT
97680678 CATCACATTGG
130 CATCACATTGG
* * * *
97680689 CCATTCGGCCTTATCACACATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACA
1 CCATTCGGCCTTAGCACATATATACA-CTTCACATTCATCACATTGGCCATTCGGCCTTATCACA
*
97680754 TATGTACATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACAAATGCATGTTCACATT
65 TATATACATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACAAATGCATGTTCACATT
*
97680819 CATCACATTTG
130 CATCACATTGG
* *
97680830 CCATTCGGCCTTAGCTCATATATACACATTCACATCCATCACAT
1 CCATTCGGCCTTAGCACATATATACAC-TTCACATTCATCACAT
97680874 AAAATCCTAA
Statistics
Matches: 161, Mismatches: 22, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
141 159 0.99
142 2 0.01
ACGTcount: A:0.26, C:0.29, G:0.11, T:0.33
Consensus pattern (140 bp):
CCATTCGGCCTTAGCACATATATACACTTCACATTCATCACATTGGCCATTCGGCCTTATCACAT
ATATACATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACAAATGCATGTTCACATTC
ATCACATTGG
Found at i:97683864 original size:43 final size:42
Alignment explanation
Indices: 97683816--97683935 Score: 127
Period size: 43 Copynumber: 2.8 Consensus size: 42
97683806 AATGCTAACG
* *
97683816 TCCCAGACGTGGTCTTACATGTAATCACATATCGATGCCA-CTA
1 TCCCAGACGTGGTCTTACA-GAAATCACATATCGATG-CAGATA
* *
97683859 TCCCAGACAG-GGTCTTACACAAATCACATATACGATGCAGATG
1 TCCCAGAC-GTGGTCTTACAGAAATCACATAT-CGATGCAGATA
* *
97683902 TCCCAGACATGGTCTTACACGCAATCACATATCG
1 TCCCAGACGTGGTCTTACA-GAAATCACATATCG
97683936 TAAATCCTAT
Statistics
Matches: 65, Mismatches: 7, Indels: 10
0.79 0.09 0.12
Matches are distributed among these distances:
42 12 0.18
43 42 0.65
44 11 0.17
ACGTcount: A:0.31, C:0.28, G:0.17, T:0.24
Consensus pattern (42 bp):
TCCCAGACGTGGTCTTACAGAAATCACATATCGATGCAGATA
Found at i:97690036 original size:18 final size:18
Alignment explanation
Indices: 97689996--97690038 Score: 54
Period size: 18 Copynumber: 2.4 Consensus size: 18
97689986 GACAACGGAG
97689996 ATGATTA-GAGCTGATTA
1 ATGATTATGAGCTGATTA
*
97690013 AGGATTATGAGCTGA-TA
1 ATGATTATGAGCTGATTA
97690030 ATTGATTAT
1 A-TGATTAT
97690039 CAACTGGGAA
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
17 9 0.41
18 13 0.59
ACGTcount: A:0.35, C:0.05, G:0.23, T:0.37
Consensus pattern (18 bp):
ATGATTATGAGCTGATTA
Found at i:97701821 original size:39 final size:39
Alignment explanation
Indices: 97701769--97701847 Score: 158
Period size: 39 Copynumber: 2.0 Consensus size: 39
97701759 TCCAACTTTG
97701769 TTTTTAAAGCTCAATCTCTTTCCCTTAGCGTTTGTTTAC
1 TTTTTAAAGCTCAATCTCTTTCCCTTAGCGTTTGTTTAC
97701808 TTTTTAAAGCTCAATCTCTTTCCCTTAGCGTTTGTTTAC
1 TTTTTAAAGCTCAATCTCTTTCCCTTAGCGTTTGTTTAC
97701847 T
1 T
97701848 CCATTCACTT
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 40 1.00
ACGTcount: A:0.18, C:0.23, G:0.10, T:0.49
Consensus pattern (39 bp):
TTTTTAAAGCTCAATCTCTTTCCCTTAGCGTTTGTTTAC
Found at i:97709690 original size:16 final size:16
Alignment explanation
Indices: 97709669--97709705 Score: 65
Period size: 16 Copynumber: 2.3 Consensus size: 16
97709659 CAGTAAATCT
97709669 TGAAATGCCGAAAAGC
1 TGAAATGCCGAAAAGC
*
97709685 TGAAATGTCGAAAAGC
1 TGAAATGCCGAAAAGC
97709701 TGAAA
1 TGAAA
97709706 ATCTGGATAC
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.46, C:0.14, G:0.24, T:0.16
Consensus pattern (16 bp):
TGAAATGCCGAAAAGC
Found at i:97709963 original size:29 final size:30
Alignment explanation
Indices: 97709921--97710006 Score: 112
Period size: 29 Copynumber: 3.0 Consensus size: 30
97709911 ACATGGCTTG
*
97709921 GAAT-TGATTCGGGCC-AGATGGGCCATAT
1 GAATATGATTTGGGCCTAGATGGGCCATAT
97709949 GAATATGATTTGGGCCTA-ATGGGCCATAT
1 GAATATGATTTGGGCCTAGATGGGCCATAT
97709978 GAATGA-GA-TTGGGCCTAG-TGGGCCATAT
1 GAAT-ATGATTTGGGCCTAGATGGGCCATAT
97710006 G
1 G
97710007 CATGTATGTA
Statistics
Matches: 53, Mismatches: 1, Indels: 8
0.85 0.02 0.13
Matches are distributed among these distances:
28 24 0.45
29 27 0.51
30 2 0.04
ACGTcount: A:0.26, C:0.15, G:0.33, T:0.27
Consensus pattern (30 bp):
GAATATGATTTGGGCCTAGATGGGCCATAT
Found at i:97709999 original size:28 final size:28
Alignment explanation
Indices: 97709921--97710006 Score: 106
Period size: 28 Copynumber: 3.0 Consensus size: 28
97709911 ACATGGCTTG
97709921 GAAT-TGATTCGGGCC-AGATGGGCCATAT
1 GAATATGATT-GGGCCTAG-TGGGCCATAT
*
97709949 GAATATGATTTGGGCCTAATGGGCCATAT
1 GAATATGA-TTGGGCCTAGTGGGCCATAT
97709978 GAATGA-GATTGGGCCTAGTGGGCCATAT
1 GAAT-ATGATTGGGCCTAGTGGGCCATAT
97710006 G
1 G
97710007 CATGTATGTA
Statistics
Matches: 52, Mismatches: 2, Indels: 8
0.84 0.03 0.13
Matches are distributed among these distances:
28 24 0.46
29 24 0.46
30 4 0.08
ACGTcount: A:0.26, C:0.15, G:0.33, T:0.27
Consensus pattern (28 bp):
GAATATGATTGGGCCTAGTGGGCCATAT
Found at i:97716633 original size:15 final size:15
Alignment explanation
Indices: 97716604--97716653 Score: 66
Period size: 15 Copynumber: 3.4 Consensus size: 15
97716594 CAAAGATAAC
*
97716604 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
97716618 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
* *
97716633 AAGAGATCCAGGATA
1 AAGAAATCCAGAATA
97716648 AAGAAA
1 AAGAAA
97716654 CCCAAGATAC
Statistics
Matches: 31, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
14 8 0.26
15 23 0.74
ACGTcount: A:0.60, C:0.12, G:0.18, T:0.10
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:97716662 original size:15 final size:15
Alignment explanation
Indices: 97716615--97716662 Score: 53
Period size: 15 Copynumber: 3.2 Consensus size: 15
97716605 AGAAAACCGA
97716615 ATAAAGAAATCC-AG
1 ATAAAGAAATCCAAG
* *
97716629 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
97716645 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
97716660 ATA
1 ATA
97716663 CGATACTATG
Statistics
Matches: 27, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
15 26 0.96
16 1 0.04
ACGTcount: A:0.56, C:0.15, G:0.17, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:97730825 original size:13 final size:13
Alignment explanation
Indices: 97730807--97730832 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
97730797 AAGAAATCCA
97730807 ACACGGGCGTGTC
1 ACACGGGCGTGTC
97730820 ACACGGGCGTGTC
1 ACACGGGCGTGTC
97730833 CTTGTCGAGC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.15, C:0.31, G:0.38, T:0.15
Consensus pattern (13 bp):
ACACGGGCGTGTC
Found at i:97735622 original size:64 final size:64
Alignment explanation
Indices: 97735521--97735647 Score: 227
Period size: 64 Copynumber: 2.0 Consensus size: 64
97735511 TACAGTTATA
* * *
97735521 GTTTGTTCCAATTAGATTAATGTTGTAATGTATTTAATTTATATAACAAAATTTATATTACAAT
1 GTTTGTTCCAATTAAATTAATATTGTAATGTATTTAATTTATATAACAAAATTTAAATTACAAT
97735585 GTTTGTTCCAATTAAATTAATATTGTAATGTATTTAATTTATATAACAAAATTTAAATTACAA
1 GTTTGTTCCAATTAAATTAATATTGTAATGTATTTAATTTATATAACAAAATTTAAATTACAA
97735648 AACTAAGTTT
Statistics
Matches: 60, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
64 60 1.00
ACGTcount: A:0.40, C:0.06, G:0.08, T:0.46
Consensus pattern (64 bp):
GTTTGTTCCAATTAAATTAATATTGTAATGTATTTAATTTATATAACAAAATTTAAATTACAAT
Found at i:97736169 original size:33 final size:33
Alignment explanation
Indices: 97736132--97736200 Score: 93
Period size: 33 Copynumber: 2.1 Consensus size: 33
97736122 CCATAATGTG
* * *
97736132 GTGGACACTGGCCGGGAGGAATGCTGTACTGCA
1 GTGGACACGGGCCAGGAGGAATGCTGTACTACA
* *
97736165 GTGGATACGGGTCAGGAGGAATGCTGTACTACA
1 GTGGACACGGGCCAGGAGGAATGCTGTACTACA
97736198 GTG
1 GTG
97736201 AATACGACCC
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
33 31 1.00
ACGTcount: A:0.23, C:0.17, G:0.39, T:0.20
Consensus pattern (33 bp):
GTGGACACGGGCCAGGAGGAATGCTGTACTACA
Found at i:97739331 original size:29 final size:29
Alignment explanation
Indices: 97739297--97739370 Score: 96
Period size: 29 Copynumber: 2.6 Consensus size: 29
97739287 TCATCAACCA
*
97739297 CGCACACTTAGTGCCATGTACTTT-AAACT
1 CGCACACTTAGTGCCATGCA-TTTCAAACT
**
97739326 CGCACACTTAGTGCCATGCATTTCAAGTT
1 CGCACACTTAGTGCCATGCATTTCAAACT
*
97739355 CGCACACCTAGTGCCA
1 CGCACACTTAGTGCCA
97739371 ATCTCACAAC
Statistics
Matches: 40, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
28 3 0.08
29 37 0.93
ACGTcount: A:0.26, C:0.31, G:0.16, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCATTTCAAACT
Found at i:97741726 original size:40 final size:40
Alignment explanation
Indices: 97741664--97741948 Score: 468
Period size: 40 Copynumber: 7.2 Consensus size: 40
97741654 AAACCAAGTA
* * *
97741664 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* *
97741703 CCTTCGGGACTTAGCCCGGATATAGTAGCTCGCACCAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
97741743 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
97741783 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
97741823 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
97741863 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
97741903 CCTTCGGGACTTAGCCCGGA-ATTAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
97741943 CCTTCG
1 CCTTCG
97741949 TTATCATCCG
Statistics
Matches: 234, Mismatches: 9, Indels: 5
0.94 0.04 0.02
Matches are distributed among these distances:
39 14 0.06
40 220 0.94
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:97746023 original size:3 final size:3
Alignment explanation
Indices: 97746017--97746049 Score: 52
Period size: 3 Copynumber: 11.7 Consensus size: 3
97746007 CCTCCTCCTC
97746017 CTT CTT CTT CTT CTT CTT C-T CTT CTT -TT CTT CT
1 CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CT
97746050 CCTTTCGTTT
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
2 4 0.14
3 24 0.86
ACGTcount: A:0.00, C:0.33, G:0.00, T:0.67
Consensus pattern (3 bp):
CTT
Found at i:97746029 original size:9 final size:9
Alignment explanation
Indices: 97746017--97746049 Score: 52
Period size: 8 Copynumber: 3.9 Consensus size: 9
97746007 CCTCCTCCTC
97746017 CTTCTTCTT
1 CTTCTTCTT
97746026 CTTCTTCTT
1 CTTCTTCTT
97746035 C-TCTTCTT
1 CTTCTTCTT
97746043 -TTCTTCT
1 CTTCTTCT
97746050 CCTTTCGTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
8 13 0.57
9 10 0.43
ACGTcount: A:0.00, C:0.33, G:0.00, T:0.67
Consensus pattern (9 bp):
CTTCTTCTT
Found at i:97747817 original size:40 final size:40
Alignment explanation
Indices: 97747560--97747817 Score: 342
Period size: 40 Copynumber: 6.5 Consensus size: 40
97747550 AAGCCAAGTA
* * * * *
97747560 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCTCGAATA
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* * *
97747599 CCTTCAGGACATAGCCCGAATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
97747639 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAATTG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
97747679 CCTTCGAGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
97747719 CCTTCGGGACTTAGCCCAGATATAGTAACTTGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * *
97747759 CCTTCGGGACTTAGCCCGGA-ACTAGTCACTAGCGCAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
97747799 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
97747818 TTATCATCCA
Statistics
Matches: 195, Mismatches: 21, Indels: 5
0.88 0.10 0.02
Matches are distributed among these distances:
39 12 0.06
40 183 0.94
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:97752961 original size:27 final size:27
Alignment explanation
Indices: 97752926--97752978 Score: 70
Period size: 27 Copynumber: 2.0 Consensus size: 27
97752916 AATGGGTGTA
*
97752926 ATTAATCAAAAGATAAATCTTTTGATC
1 ATTAATCAAAAGATAAATCATTTGATC
* * *
97752953 ATTAGTCAAAAGTTATATCATTTGAT
1 ATTAATCAAAAGATAAATCATTTGAT
97752979 TTTTAAAAAA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 22 1.00
ACGTcount: A:0.42, C:0.09, G:0.09, T:0.40
Consensus pattern (27 bp):
ATTAATCAAAAGATAAATCATTTGATC
Found at i:97760009 original size:48 final size:46
Alignment explanation
Indices: 97759890--97760009 Score: 152
Period size: 46 Copynumber: 2.6 Consensus size: 46
97759880 GATATGTGTC
* *
97759890 CTAGTGTAAGACATGTCTGGGACATGCATCGGCCACATTATGAGAG
1 CTAGTGTAAGACATGTCTGGGACATGCATCGGCCACATGATGAAAG
* *
97759936 CCAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGA-GATGTACAAG
1 CTAGTGTAAGACATGTCTGGGACATGCATCGGCCAC-ATGATG-A-AAG
* *
97759984 CTAGTGTAAGACCTATCTGGGACATG
1 CTAGTGTAAGACATGTCTGGGACATG
97760010 GCGTTAGCTT
Statistics
Matches: 64, Mismatches: 7, Indels: 4
0.85 0.09 0.05
Matches are distributed among these distances:
46 37 0.58
47 2 0.03
48 25 0.39
ACGTcount: A:0.28, C:0.21, G:0.28, T:0.23
Consensus pattern (46 bp):
CTAGTGTAAGACATGTCTGGGACATGCATCGGCCACATGATGAAAG
Found at i:97760088 original size:49 final size:47
Alignment explanation
Indices: 97759892--97760157 Score: 190
Period size: 49 Copynumber: 5.6 Consensus size: 47
97759882 TATGTGTCCT
* * *
97759892 AGTGTAAGACATGTCTGGGACAT-GCATCGGCCAC-ATTATGAGAGCC
1 AGTGTAAGACCTATCTGGGACATGGCATCGGCC-CTATGATGAGAGCC
* * * * *
97759938 AGTGTAAGACATGTCTGGGACAT-GCATCGGCCTCGA-GATGTACAAGCT
1 AGTGTAAGACCTATCTGGGACATGGCATCGGCC-CTATGATG-A-GAGCC
* ** * * *
97759986 AGTGTAAGACCTATCTGGGACATGGCGTTAG--CT-TGTTGAGTGTC
1 AGTGTAAGACCTATCTGGGACATGGCATCGGCCCTATGATGAGAGCC
*
97760030 AGTGTAAGACCTATTTGGGACATGGCATCGGCACCTATAGATGAGAGCC
1 AGTGTAAGACCTATCTGGGACATGGCATCGGC-CCTAT-GATGAGAGCC
* * * * *
97760079 AGTGTAAGACCTATTTGGGACACGGCATCGGCCTCGATAT-AAGAAAGTC
1 AGTGTAAGACCTATCTGGGACATGGCATCGGCC-C--TATGATGAGAGCC
*
97760128 AGTGTAAGACCTGTCTGGGACACT-GCATCG
1 AGTGTAAGACCTATCTGGGACA-TGGCATCG
97760158 ACTTTGATGT
Statistics
Matches: 177, Mismatches: 29, Indels: 25
0.77 0.13 0.11
Matches are distributed among these distances:
44 28 0.16
45 1 0.01
46 40 0.23
47 4 0.02
48 26 0.15
49 75 0.42
51 3 0.02
ACGTcount: A:0.27, C:0.20, G:0.29, T:0.24
Consensus pattern (47 bp):
AGTGTAAGACCTATCTGGGACATGGCATCGGCCCTATGATGAGAGCC
Found at i:97760145 original size:142 final size:138
Alignment explanation
Indices: 97759892--97760149 Score: 326
Period size: 142 Copynumber: 1.8 Consensus size: 138
97759882 TATGTGTCCT
* * *
97759892 AGTGTAAGACATGTCTGGGACATGCATCGGCCACATTATGAGAGCCAGTGTAAGACATGTCTGGG
1 AGTGTAAGACATATCTGGGACATGCATCGGCCACATGATGAGAGCCAGTGTAAGACATATCTGGG
*
97759957 ACATGCATCGGCCTCGAGATGTACAAGCTAGTGTAAGACCTATCTGGGACATGGCGTTAGCTTGT
66 ACAGGCATCGGCCTCGAGATGTACAAGCTAGTGTAAGACCTATCTGGGACATGGCGTTAGCTTGT
97760022 TGAGTGTC
131 TGAGTGTC
* * * *
97760030 AGTGTAAGACCTATTTGGGACATGGCATCGG-CACCTATAGATGAGAGCCAGTGTAAGACCTATT
1 AGTGTAAGACATATCTGGGACAT-GCATCGGCCA-C-AT-GATGAGAGCCAGTGTAAGACATATC
* *
97760094 TGGGACACGGCATCGGCCTCGATATAAG-A-AAG-TCAGTGTAAGACCTGTCTGGGACA
62 TGGGACA-GGCATCGGCCTCGAGAT--GTACAAGCT-AGTGTAAGACCTATCTGGGACA
97760150 CTGCATCGAC
Statistics
Matches: 102, Mismatches: 10, Indels: 12
0.82 0.08 0.10
Matches are distributed among these distances:
138 22 0.22
139 8 0.08
140 2 0.02
141 29 0.28
142 39 0.38
143 1 0.01
144 1 0.01
ACGTcount: A:0.27, C:0.20, G:0.29, T:0.24
Consensus pattern (138 bp):
AGTGTAAGACATATCTGGGACATGCATCGGCCACATGATGAGAGCCAGTGTAAGACATATCTGGG
ACAGGCATCGGCCTCGAGATGTACAAGCTAGTGTAAGACCTATCTGGGACATGGCGTTAGCTTGT
TGAGTGTC
Found at i:97770472 original size:139 final size:139
Alignment explanation
Indices: 97770222--97771133 Score: 1788
Period size: 139 Copynumber: 6.6 Consensus size: 139
97770212 AACCCGCCCC
97770222 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGAACTCAA
1 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGAACTCAA
97770287 CTCAACGAGTTCGAATGCCTAGTTACATTTCACGAACTCGGACTCAACTCAACGAGTTCGGACAT
66 CTCAACGAGTTCGAATGCCTAGTTACATTTCACGAACTCGGACTCAACTCAACGAGTTCGGACAT
97770352 TCGCATCCA
131 TCGCATCCA
97770361 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGAACTCAA
1 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGAACTCAA
97770426 CTCAACGAGTTCGAATGCCTAGTTACATTTCACGAACTCGGACTCAACTCAACGAGTTCGGACAT
66 CTCAACGAGTTCGAATGCCTAGTTACATTTCACGAACTCGGACTCAACTCAACGAGTTCGGACAT
97770491 TCGCATCCA
131 TCGCATCCA
97770500 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGAACTCAA
1 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGAACTCAA
97770565 CTCAACGAGTTCGAATGCCTAGTTACATTTCACGAACTCGGACTCAACTCAACGAGTTCGGACAT
66 CTCAACGAGTTCGAATGCCTAGTTACATTTCACGAACTCGGACTCAACTCAACGAGTTCGGACAT
97770630 TCGCATCCA
131 TCGCATCCA
97770639 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGAACTCAA
1 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGAACTCAA
97770704 CTCAACGAGTTCGAATGCCTAGTTACATTTCACGAACTCGGACTCAACTCAACGAGTTCGGACAT
66 CTCAACGAGTTCGAATGCCTAGTTACATTTCACGAACTCGGACTCAACTCAACGAGTTCGGACAT
97770769 TCGCATCCA
131 TCGCATCCA
97770778 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGAACTCAA
1 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGAACTCAA
97770843 CTCAACGAGTTCGAATGCCTAGTTACATTTCACGAACTCGGACTCAACTCAACGAGTTCGGACAT
66 CTCAACGAGTTCGAATGCCTAGTTACATTTCACGAACTCGGACTCAACTCAACGAGTTCGGACAT
97770908 TCGCATCCA
131 TCGCATCCA
97770917 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGAACTCAA
1 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGAACTCAA
97770982 CTCAACGAGTTCGAATGCCTAGTTACATTTCACGAACTCGGACTCAACTCAACGAGTTCGGACAT
66 CTCAACGAGTTCGAATGCCTAGTTACATTTCACGAACTCGGACTCAACTCAACGAGTTCGGACAT
97771047 TCGCATCCA
131 TCGCATCCA
* * * *
97771056 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAA
1 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGAACTCAA
97771121 CTCAACGAGTTCG
66 CTCAACGAGTTCG
97771134 GACATTCGCA
Statistics
Matches: 769, Mismatches: 4, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
139 769 1.00
ACGTcount: A:0.30, C:0.29, G:0.20, T:0.22
Consensus pattern (139 bp):
TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGAACTCAA
CTCAACGAGTTCGAATGCCTAGTTACATTTCACGAACTCGGACTCAACTCAACGAGTTCGGACAT
TCGCATCCA
Found at i:97777808 original size:39 final size:39
Alignment explanation
Indices: 97777765--97777878 Score: 165
Period size: 39 Copynumber: 2.9 Consensus size: 39
97777755 CCAGACATAT
* * *
97777765 TTCCAGCACGTAGCCTGCAGACCTTAAGTCCGGTTATAA
1 TTCCAGCACATAGCCTGCGGACCTTAAGTCCGGATATAA
* *
97777804 TTCCAGCACATAGCTTGTGGACCTTAAGTCCGGATATAA
1 TTCCAGCACATAGCCTGCGGACCTTAAGTCCGGATATAA
* *
97777843 TTCCAGCACATAGCCTGCGGACCCTAAGTCGGGATA
1 TTCCAGCACATAGCCTGCGGACCTTAAGTCCGGATA
97777879 AACATCACTG
Statistics
Matches: 66, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
39 66 1.00
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (39 bp):
TTCCAGCACATAGCCTGCGGACCTTAAGTCCGGATATAA
Found at i:97780082 original size:27 final size:26
Alignment explanation
Indices: 97780013--97780127 Score: 88
Period size: 27 Copynumber: 4.3 Consensus size: 26
97780003 AGCATGGCTG
* * *
97780013 CCAGAACAAATATTGTGATAGAGTCA
1 CCAGAACAGATATTGTGGTAGAGCCA
*
97780039 CCAGATATAGATATTGTGGTAGAGCCA
1 CCAGA-ACAGATATTGTGGTAGAGCCA
* *
97780066 CTAGAACAGATATTTGTGG-CGTAGCCA
1 CCAGAACAGATA-TTGTGGTAG-AGCCA
* * *
97780093 CCAGAAACAGATGTTTGTGGCATAGCCA
1 CCAG-AACAGAT-ATTGTGGTAGAGCCA
*
97780121 CTAGAAC
1 CCAGAAC
97780128 GCTTCTTCCA
Statistics
Matches: 71, Mismatches: 12, Indels: 11
0.76 0.13 0.12
Matches are distributed among these distances:
26 12 0.17
27 38 0.54
28 21 0.30
ACGTcount: A:0.35, C:0.18, G:0.23, T:0.23
Consensus pattern (26 bp):
CCAGAACAGATATTGTGGTAGAGCCA
Found at i:97780110 original size:28 final size:28
Alignment explanation
Indices: 97780047--97780126 Score: 101
Period size: 28 Copynumber: 2.9 Consensus size: 28
97780037 CACCAGATAT
* *
97780047 AGATA-TTGTGGTAGAGCCACTAG-AAC
1 AGATATTTGTGGCATAGCCACTAGAAAC
* *
97780073 AGATATTTGTGGCGTAGCCACCAGAAAC
1 AGATATTTGTGGCATAGCCACTAGAAAC
*
97780101 AGATGTTTGTGGCATAGCCACTAGAA
1 AGATATTTGTGGCATAGCCACTAGAA
97780127 CGCTTCTTCC
Statistics
Matches: 45, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
26 5 0.11
27 14 0.31
28 26 0.58
ACGTcount: A:0.33, C:0.17, G:0.26, T:0.24
Consensus pattern (28 bp):
AGATATTTGTGGCATAGCCACTAGAAAC
Found at i:97784348 original size:40 final size:39
Alignment explanation
Indices: 97784280--97784447 Score: 131
Period size: 40 Copynumber: 4.2 Consensus size: 39
97784270 CGGGGTTTAG
** * *
97784280 CCGGATATAACCACTCGCAC-AAGGCCTTCAGGTCTTAAC
1 CCGGATATAGTCACTAGCACAAATGCCTTC-GGTCTTAAC
* * * * *
97784319 CTGGATATGGTCACTAGCATAAATGCCTTCGGGACTTAGC
1 CCGGATATAGTCACTAGCACAAATGCCTTC-GGTCTTAAC
* **
97784359 CCGGATATAGTCGCTAGCACAAATGCCTTCGGATCTTAGT
1 CCGGATATAGTCACTAGCACAAATGCCTTCGG-TCTTAAC
* * * * *
97784399 CCGGATGTAGTCGCTTAGCACAAAAGCCTTCGGGACTTAGC
1 CCGGATATAGTCAC-TAGCACAAATGCCTTC-GGTCTTAAC
97784440 CCGGATAT
1 CCGGATAT
97784448 CATTCGAGTA
Statistics
Matches: 104, Mismatches: 21, Indels: 6
0.79 0.16 0.05
Matches are distributed among these distances:
39 16 0.15
40 59 0.57
41 27 0.26
42 2 0.02
ACGTcount: A:0.26, C:0.27, G:0.23, T:0.24
Consensus pattern (39 bp):
CCGGATATAGTCACTAGCACAAATGCCTTCGGTCTTAAC
Found at i:97784430 original size:41 final size:40
Alignment explanation
Indices: 97784303--97784447 Score: 175
Period size: 40 Copynumber: 3.6 Consensus size: 40
97784293 CTCGCACAAG
* * * * * * *
97784303 GCCTTCAGGTCTTAACCTGGATATGGTCACTAGCATAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
97784343 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
* * *
97784383 GCCTTC-GGATCTTAGTCCGGATGTAGTCGCTTAGCACAAAA
1 GCCTTCGGGA-CTTAGCCCGGATATAGTCGC-TAGCACAAAT
97784424 GCCTTCGGGACTTAGCCCGGATAT
1 GCCTTCGGGACTTAGCCCGGATAT
97784448 CATTCGAGTA
Statistics
Matches: 90, Mismatches: 12, Indels: 5
0.84 0.11 0.05
Matches are distributed among these distances:
39 3 0.03
40 57 0.63
41 27 0.30
42 3 0.03
ACGTcount: A:0.24, C:0.26, G:0.24, T:0.26
Consensus pattern (40 bp):
GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
Found at i:97791492 original size:28 final size:28
Alignment explanation
Indices: 97791394--97791509 Score: 93
Period size: 27 Copynumber: 4.3 Consensus size: 28
97791384 CAACGTGGCT
* *
97791394 ACCAG-AACAGATA-TTGTGACAG-AGTC
1 ACCAGAAACAGATATTTGTGGC-GTAGCC
**
97791420 ACCAGATGCAGATA-TTGTGGCCG-AGCC
1 ACCAGAAACAGATATTTGTGG-CGTAGCC
* *
97791447 ACTAG-AACATATATTTGTGGCGTAGCC
1 ACCAGAAACAGATATTTGTGGCGTAGCC
* *
97791474 ACCAGAAACAGATGTTTGTGGCATAGCC
1 ACCAGAAACAGATATTTGTGGCGTAGCC
97791502 ACCA-AAAC
1 ACCAGAAAC
97791510 GCTTCCTCCA
Statistics
Matches: 73, Mismatches: 12, Indels: 9
0.78 0.13 0.10
Matches are distributed among these distances:
26 12 0.16
27 37 0.51
28 24 0.33
ACGTcount: A:0.34, C:0.22, G:0.23, T:0.21
Consensus pattern (28 bp):
ACCAGAAACAGATATTTGTGGCGTAGCC
Found at i:97811914 original size:8 final size:8
Alignment explanation
Indices: 97811901--97811930 Score: 51
Period size: 8 Copynumber: 3.6 Consensus size: 8
97811891 AGTCCCTAAT
97811901 TCACAAAA
1 TCACAAAA
97811909 TCACAAAA
1 TCACAAAA
97811917 TCACAAAA
1 TCACAAAA
97811925 TACACA
1 T-CACA
97811931 TAATTTACTT
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
8 17 0.81
9 4 0.19
ACGTcount: A:0.60, C:0.27, G:0.00, T:0.13
Consensus pattern (8 bp):
TCACAAAA
Found at i:97814140 original size:13 final size:13
Alignment explanation
Indices: 97814122--97814148 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
97814112 CACAAACGAT
97814122 AAAATTTTCACAC
1 AAAATTTTCACAC
97814135 AAAATTTTCACAC
1 AAAATTTTCACAC
97814148 A
1 A
97814149 TGTCACATAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.48, C:0.22, G:0.00, T:0.30
Consensus pattern (13 bp):
AAAATTTTCACAC
Found at i:97819589 original size:32 final size:32
Alignment explanation
Indices: 97819553--97819622 Score: 86
Period size: 32 Copynumber: 2.2 Consensus size: 32
97819543 TGATTGCTCT
* **
97819553 CTTTCATTTTCTTTTCCTCTCTACTGTAATAG
1 CTTTCACTTTCTTTTCCTCTCTACCATAATAG
* *
97819585 CTTTCCCTTTCTTTTCCTTTCTACCATAATAG
1 CTTTCACTTTCTTTTCCTCTCTACCATAATAG
97819617 CATTTC
1 C-TTTC
97819623 CATCTAACAT
Statistics
Matches: 32, Mismatches: 5, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
32 28 0.88
33 4 0.12
ACGTcount: A:0.16, C:0.29, G:0.04, T:0.51
Consensus pattern (32 bp):
CTTTCACTTTCTTTTCCTCTCTACCATAATAG
Found at i:97822101 original size:28 final size:29
Alignment explanation
Indices: 97822001--97822120 Score: 170
Period size: 29 Copynumber: 4.2 Consensus size: 29
97821991 GTGAGCATGA
97822001 ATATAAATGTGATTTGGGCCTAAAGGGCC
1 ATATAAATGTGATTTGGGCCTAAAGGGCC
*
97822030 ATATAAATGTGATTTGGGCTTAAAGGGCC
1 ATATAAATGTGATTTGGGCCTAAAGGGCC
*
97822059 ATATAAATGTGATTTGGGCCTAAGGGGCC
1 ATATAAATGTGATTTGGGCCTAAAGGGCC
* * * **
97822088 ATGTGAATAT-ATTTGGGCCTAGTGGGCC
1 ATATAAATGTGATTTGGGCCTAAAGGGCC
97822116 ATATA
1 ATATA
97822121 TAGGTATGTG
Statistics
Matches: 81, Mismatches: 10, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
28 19 0.23
29 62 0.77
ACGTcount: A:0.29, C:0.12, G:0.28, T:0.30
Consensus pattern (29 bp):
ATATAAATGTGATTTGGGCCTAAAGGGCC
Found at i:97823365 original size:27 final size:27
Alignment explanation
Indices: 97823317--97823446 Score: 154
Period size: 27 Copynumber: 4.9 Consensus size: 27
97823307 GGGTGTTATA
97823317 GCCCTTATGTGGTAAAAT-ACTGTTTT
1 GCCCTTATGTGGTAAAATGACTGTTTT
* * *
97823343 GCCCTTATGTGGCAACATGACTGTTTC
1 GCCCTTATGTGGTAAAATGACTGTTTT
* *
97823370 GTCCTTATGTGGTAAAATGATTGTTTT
1 GCCCTTATGTGGTAAAATGACTGTTTT
* * *
97823397 ACCCTTTTATGGTAAAATGACTGTTTT
1 GCCCTTATGTGGTAAAATGACTGTTTT
* **
97823424 ACTATTATGTGGTAAAATGACTG
1 GCCCTTATGTGGTAAAATGACTG
97823447 AAATGCCTTT
Statistics
Matches: 86, Mismatches: 17, Indels: 1
0.83 0.16 0.01
Matches are distributed among these distances:
26 16 0.19
27 70 0.81
ACGTcount: A:0.25, C:0.15, G:0.20, T:0.41
Consensus pattern (27 bp):
GCCCTTATGTGGTAAAATGACTGTTTT
Found at i:97825641 original size:12 final size:12
Alignment explanation
Indices: 97825616--97825655 Score: 53
Period size: 12 Copynumber: 3.3 Consensus size: 12
97825606 TTGGATGGTT
**
97825616 GAGAGATTGGAG
1 GAGAGATTTTAG
*
97825628 GAGTGATTTTAG
1 GAGAGATTTTAG
97825640 GAGAGATTTTAG
1 GAGAGATTTTAG
97825652 GAGA
1 GAGA
97825656 AAATCAAGGG
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
12 24 1.00
ACGTcount: A:0.33, C:0.00, G:0.40, T:0.28
Consensus pattern (12 bp):
GAGAGATTTTAG
Found at i:97827164 original size:27 final size:27
Alignment explanation
Indices: 97827124--97827265 Score: 216
Period size: 27 Copynumber: 5.3 Consensus size: 27
97827114 CTGATTGAAC
* *
97827124 AAAATGACTGTTTTGCCCGTATGTGGT
1 AAAATGACTATTTTGCCCTTATGTGGT
* *
97827151 GAAATGACTATTTTACCCTTATGTGGT
1 AAAATGACTATTTTGCCCTTATGTGGT
* *
97827178 AACATGACTATTTTGCCTTTATGTGGT
1 AAAATGACTATTTTGCCCTTATGTGGT
97827205 AAAATGACTA--TTGCCCTTATGTGGT
1 AAAATGACTATTTTGCCCTTATGTGGT
97827230 AAAATGACTATTTTGCCCTTATGTGGT
1 AAAATGACTATTTTGCCCTTATGTGGT
97827257 AAAATGACT
1 AAAATGACT
97827266 GAAATGCCCT
Statistics
Matches: 103, Mismatches: 10, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
25 24 0.23
27 79 0.77
ACGTcount: A:0.27, C:0.15, G:0.20, T:0.39
Consensus pattern (27 bp):
AAAATGACTATTTTGCCCTTATGTGGT
Found at i:97827244 original size:52 final size:53
Alignment explanation
Indices: 97827124--97827265 Score: 214
Period size: 52 Copynumber: 2.7 Consensus size: 53
97827114 CTGATTGAAC
* * *
97827124 AAAATGACTGTTTTGCCCGTATGTGGTGAAATGACTATTTTACCCTTATGTGGT
1 AAAATGACTATTTTGCCCTTATGTGGTAAAATGACTA-TTTACCCTTATGTGGT
* * *
97827178 AACATGACTATTTTGCCTTTATGTGGTAAAATGACTA-TTGCCCTTATGTGGT
1 AAAATGACTATTTTGCCCTTATGTGGTAAAATGACTATTTACCCTTATGTGGT
97827230 AAAATGACTATTTTGCCCTTATGTGGTAAAATGACT
1 AAAATGACTATTTTGCCCTTATGTGGTAAAATGACT
97827266 GAAATGCCCT
Statistics
Matches: 80, Mismatches: 8, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
52 48 0.60
54 32 0.40
ACGTcount: A:0.27, C:0.15, G:0.20, T:0.39
Consensus pattern (53 bp):
AAAATGACTATTTTGCCCTTATGTGGTAAAATGACTATTTACCCTTATGTGGT
Found at i:97827284 original size:79 final size:79
Alignment explanation
Indices: 97827136--97827295 Score: 196
Period size: 79 Copynumber: 2.0 Consensus size: 79
97827126 AATGACTGTT
* * ** * * **
97827136 TTGCCCGTATGTGGTGAAATGACTATTTTACCCTTATGTGGTAACATGACTATTTTGCCTTTATG
1 TTGCCCGTATGTGGTAAAATGACTATTTTACCCTTATGTGGTAAAATGACTATAATGCCCTAACA
*
97827201 TGGTAAAATGACTA
66 TGGTAAAATAACTA
* *
97827215 TTGCCCTTATGTGGTAAAATGACTATTTTGCCCTTATGTGGTAAAATGACTGA-AATGCCCTAAC
1 TTGCCCGTATGTGGTAAAATGACTATTTTACCCTTATGTGGTAAAATGACT-ATAATGCCCTAAC
*
97827279 ATGGTAAATTAACTA
65 ATGGTAAAATAACTA
97827294 TT
1 TT
97827296 TTGCCCCTAT
Statistics
Matches: 68, Mismatches: 12, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
79 67 0.99
80 1 0.01
ACGTcount: A:0.28, C:0.16, G:0.19, T:0.38
Consensus pattern (79 bp):
TTGCCCGTATGTGGTAAAATGACTATTTTACCCTTATGTGGTAAAATGACTATAATGCCCTAACA
TGGTAAAATAACTA
Found at i:97827298 original size:54 final size:52
Alignment explanation
Indices: 97827124--97827308 Score: 163
Period size: 54 Copynumber: 3.5 Consensus size: 52
97827114 CTGATTGAAC
* * * * * * * **
97827124 AAAATGACTGTTTTGCCCGTATGTGGTGAAATGACTATTTTACCCTTATGTGGT
1 AAAATAACTATTTTGCCCTTATGTGGTAAAATGACTA--ATGCCCTAACATGGT
* * * * * **
97827178 AACATGACTATTTTGCCTTTATGTGGTAAAATGACTATTGCCCTTATGTGGT
1 AAAATAACTATTTTGCCCTTATGTGGTAAAATGACTAATGCCCTAACATGGT
*
97827230 AAAATGACTATTTTGCCCTTATGTGGTAAAATGACTGAAATGCCCTAACATGGT
1 AAAATAACTATTTTGCCCTTATGTGGTAAAATGACT--AATGCCCTAACATGGT
* *
97827284 AAATTAACTATTTTGCCCCTATGTG
1 AAAATAACTATTTTGCCCTTATGTG
97827309 ATATATGTTT
Statistics
Matches: 114, Mismatches: 15, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
52 48 0.42
54 66 0.58
ACGTcount: A:0.28, C:0.16, G:0.19, T:0.37
Consensus pattern (52 bp):
AAAATAACTATTTTGCCCTTATGTGGTAAAATGACTAATGCCCTAACATGGT
Found at i:97834291 original size:10 final size:10
Alignment explanation
Indices: 97834276--97834312 Score: 56
Period size: 10 Copynumber: 3.7 Consensus size: 10
97834266 ATATATACTT
97834276 AACCAAAATA
1 AACCAAAATA
97834286 AACCAAAATA
1 AACCAAAATA
*
97834296 TACCAAAATA
1 AACCAAAATA
*
97834306 AGCCAAA
1 AACCAAA
97834313 TCACATGGCT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
10 24 1.00
ACGTcount: A:0.65, C:0.22, G:0.03, T:0.11
Consensus pattern (10 bp):
AACCAAAATA
Found at i:97835615 original size:45 final size:44
Alignment explanation
Indices: 97835452--97835623 Score: 206
Period size: 45 Copynumber: 3.9 Consensus size: 44
97835442 CTAAATTCAT
* * * * *
97835452 TCACCGGCATT-TCGCCTGCTAGGCTCGAAGCCTG-ATA-TCATT
1 TCACCGGCATTATAGCCTACTAGGCTCAAAGCCCGAATAGT-ATC
* * *
97835494 TCACCGGCATTATATCCTGCTAGGCTCGAAAGCCCGAATGGTATC
1 TCACCGGCATTATAGCCTACTAGGCTC-AAAGCCCGAATAGTATC
97835539 TCACCGGCATTATAGCCTACTAGGCTCAAAGGCCCGAATAGTATC
1 TCACCGGCATTATAGCCTACTAGGCTCAAA-GCCCGAATAGTATC
*
97835584 TCACCGGCATTATAGCCTACTAGGCTCAAAGGCCTGAATA
1 TCACCGGCATTATAGCCTACTAGGCTCAAA-GCCCGAATA
97835624 ATACTATGCG
Statistics
Matches: 115, Mismatches: 10, Indels: 7
0.87 0.08 0.05
Matches are distributed among these distances:
42 11 0.10
43 13 0.11
44 9 0.08
45 81 0.70
46 1 0.01
ACGTcount: A:0.26, C:0.29, G:0.21, T:0.24
Consensus pattern (44 bp):
TCACCGGCATTATAGCCTACTAGGCTCAAAGCCCGAATAGTATC
Found at i:97836912 original size:30 final size:30
Alignment explanation
Indices: 97836878--97836975 Score: 90
Period size: 30 Copynumber: 3.1 Consensus size: 30
97836868 AACTAGCTTA
*
97836878 AATTATGCTAAAATCTCAAAAACTAACATG
1 AATTATGCTAAAATCTTAAAAACTAACATG
* * * * *
97836908 AATTA-GCTAAGTAAGGGACTTAGAAACTAGCTTA
1 AATTATGCTAA--AA---TCTTAAAAACTAACATG
97836942 AATTATGCTAAAATCTTAAAAACTAACATG
1 AATTATGCTAAAATCTTAAAAACTAACATG
97836972 AATT
1 AATT
97836976 TCTTACCTTA
Statistics
Matches: 51, Mismatches: 11, Indels: 12
0.69 0.15 0.16
Matches are distributed among these distances:
29 5 0.10
30 21 0.41
31 2 0.04
33 2 0.04
34 16 0.31
35 5 0.10
ACGTcount: A:0.47, C:0.13, G:0.11, T:0.29
Consensus pattern (30 bp):
AATTATGCTAAAATCTTAAAAACTAACATG
Found at i:97836930 original size:64 final size:64
Alignment explanation
Indices: 97836849--97836975 Score: 236
Period size: 64 Copynumber: 2.0 Consensus size: 64
97836839 TTTGACATGG
*
97836849 GCTAAGTAAGGGACTTAGTAACTAGCTTAAATTATGCTAAAATCTCAAAAACTAACATGAATTA
1 GCTAAGTAAGGGACTTAGAAACTAGCTTAAATTATGCTAAAATCTCAAAAACTAACATGAATTA
*
97836913 GCTAAGTAAGGGACTTAGAAACTAGCTTAAATTATGCTAAAATCTTAAAAACTAACATGAATT
1 GCTAAGTAAGGGACTTAGAAACTAGCTTAAATTATGCTAAAATCTCAAAAACTAACATGAATT
97836976 TCTTACCTTA
Statistics
Matches: 61, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
64 61 1.00
ACGTcount: A:0.44, C:0.13, G:0.14, T:0.28
Consensus pattern (64 bp):
GCTAAGTAAGGGACTTAGAAACTAGCTTAAATTATGCTAAAATCTCAAAAACTAACATGAATTA
Found at i:97836946 original size:34 final size:35
Alignment explanation
Indices: 97836849--97836952 Score: 103
Period size: 34 Copynumber: 3.1 Consensus size: 35
97836839 TTTGACATGG
*
97836849 GCTAAGTAAGGGACTTAGTAACTAGCTTAAATTAT
1 GCTAAGTAAGGGACTTAGAAACTAGCTTAAATTAT
* * * * * *
97836884 GCTAA--AA---TCTCAAAAACTAACATGAATTA-
1 GCTAAGTAAGGGACTTAGAAACTAGCTTAAATTAT
97836913 GCTAAGTAAGGGACTTAGAAACTAGCTTAAATTAT
1 GCTAAGTAAGGGACTTAGAAACTAGCTTAAATTAT
97836948 GCTAA
1 GCTAA
97836953 AATCTTAAAA
Statistics
Matches: 50, Mismatches: 13, Indels: 12
0.67 0.17 0.16
Matches are distributed among these distances:
29 5 0.10
30 15 0.30
31 2 0.04
33 2 0.04
34 16 0.32
35 10 0.20
ACGTcount: A:0.42, C:0.13, G:0.16, T:0.28
Consensus pattern (35 bp):
GCTAAGTAAGGGACTTAGAAACTAGCTTAAATTAT
Found at i:97842546 original size:22 final size:22
Alignment explanation
Indices: 97842518--97842559 Score: 75
Period size: 22 Copynumber: 1.9 Consensus size: 22
97842508 TAACAAATGG
97842518 AGTAAGCTTTCATAAGCTTAAT
1 AGTAAGCTTTCATAAGCTTAAT
*
97842540 AGTAAGCTTTTATAAGCTTA
1 AGTAAGCTTTCATAAGCTTA
97842560 GTAAGTTTTA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.36, C:0.12, G:0.14, T:0.38
Consensus pattern (22 bp):
AGTAAGCTTTCATAAGCTTAAT
Found at i:97843082 original size:45 final size:45
Alignment explanation
Indices: 97842977--97843148 Score: 183
Period size: 45 Copynumber: 3.9 Consensus size: 45
97842967 CTGAATTCGT
* * * *
97842977 TCACCGGCATT-TCGCCTGCTAGGCTCGAA-GCCTG-ATA-TCATT
1 TCACCGACATTATAGCCTGCTAGGCTCAAAGGCCTGAATAGT-ATA
* * * * *
97843019 TCACTGGCATTATAGCCTGCTGGGCTCGAAA-GCCTAAATAGTATC
1 TCACCGACATTATAGCCTGCTAGGCTC-AAAGGCCTGAATAGTATA
*
97843064 TCACCGACATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATA
1 TCACCGACATTATAGCCTGCTAGGCTCAAAGGCCTGAATAGTATA
* *
97843109 TCACCGGCATTATAGTCTGCTAGGCTCAAAGGCCTGAATA
1 TCACCGACATTATAGCCTGCTAGGCTCAAAGGCCTGAATA
97843149 ATACTGTGCG
Statistics
Matches: 110, Mismatches: 15, Indels: 7
0.83 0.11 0.05
Matches are distributed among these distances:
42 10 0.09
43 13 0.12
44 9 0.08
45 77 0.70
46 1 0.01
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.26
Consensus pattern (45 bp):
TCACCGACATTATAGCCTGCTAGGCTCAAAGGCCTGAATAGTATA
Found at i:97843090 original size:88 final size:89
Alignment explanation
Indices: 97842977--97843148 Score: 208
Period size: 90 Copynumber: 1.9 Consensus size: 89
97842967 CTGAATTCGT
* * * * * *
97842977 TCACCGGCATTTCGCCTGCTAGGCTCGAA-GCCTG-ATA-TCATTTCACTGGCATTATAGCCTGC
1 TCACCGACATTTAGCCTGCTAGGCTCAAAGGCCCGAATAGT-ATATCACCGGCATTATAGCCTGC
*
97843039 TGGGCTCGAAA-GCCTAAATAGTATC
65 TAGGCTC-AAAGGCCTAAATAGTATC
*
97843064 TCACCGACATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATATCACCGGCATTATAGTCTGC
1 TCACCGACATT-TAGCCTGCTAGGCTCAAAGGCCCGAATAGTATATCACCGGCATTATAGCCTGC
*
97843129 TAGGCTCAAAGGCCTGAATA
65 TAGGCTCAAAGGCCTAAATA
97843149 ATACTGTGCG
Statistics
Matches: 71, Mismatches: 9, Indels: 7
0.82 0.10 0.08
Matches are distributed among these distances:
87 10 0.14
88 16 0.23
89 7 0.10
90 37 0.52
91 1 0.01
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.26
Consensus pattern (89 bp):
TCACCGACATTTAGCCTGCTAGGCTCAAAGGCCCGAATAGTATATCACCGGCATTATAGCCTGCT
AGGCTCAAAGGCCTAAATAGTATC
Found at i:97844007 original size:47 final size:47
Alignment explanation
Indices: 97843955--97844097 Score: 259
Period size: 47 Copynumber: 3.0 Consensus size: 47
97843945 AAAATTTTCT
*
97843955 TTAACTAAGTAACTTATCTGGAAATATTAAGGGCAAATTTAACAAGC
1 TTAACTAAGTAACTTATCCGGAAATATTAAGGGCAAATTTAACAAGC
97844002 TTAACTAAGTAACTTATCCGGAAATATTAAGGGCAAATTTAACAAGC
1 TTAACTAAGTAACTTATCCGGAAATATTAAGGGCAAATTTAACAAGC
* *
97844049 TTAACTAAGTAACTTATCCGGGAATATTAAGAGCAAATTTAACAAGC
1 TTAACTAAGTAACTTATCCGGAAATATTAAGGGCAAATTTAACAAGC
97844096 TT
1 TT
97844098 TAAATTCAAC
Statistics
Matches: 93, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
47 93 1.00
ACGTcount: A:0.42, C:0.14, G:0.15, T:0.29
Consensus pattern (47 bp):
TTAACTAAGTAACTTATCCGGAAATATTAAGGGCAAATTTAACAAGC
Found at i:97846179 original size:26 final size:26
Alignment explanation
Indices: 97846098--97846180 Score: 80
Period size: 26 Copynumber: 3.2 Consensus size: 26
97846088 TACATTGTTG
* *
97846098 CTCATACGAGCTATGAAATGGG-TCTA
1 CTCACACGAGCTGTGAAATGGGCT-TA
* * *
97846124 CTTACACAAGTTGTGAAATGGGAC-TA
1 CTCACACGAGCTGTGAAATGGG-CTTA
*
97846150 CTCACACGAGCTGTGAAATGGGCTTG
1 CTCACACGAGCTGTGAAATGGGCTTA
97846176 CTCAC
1 CTCAC
97846181 TTGAGCTATG
Statistics
Matches: 45, Mismatches: 9, Indels: 6
0.75 0.15 0.10
Matches are distributed among these distances:
25 1 0.02
26 44 0.98
ACGTcount: A:0.29, C:0.22, G:0.24, T:0.25
Consensus pattern (26 bp):
CTCACACGAGCTGTGAAATGGGCTTA
Found at i:97846187 original size:26 final size:26
Alignment explanation
Indices: 97846098--97846171 Score: 94
Period size: 26 Copynumber: 2.8 Consensus size: 26
97846088 TACATTGTTG
* * *
97846098 CTCATACGAGCTATGAAATGGGTCTA
1 CTCACACGAGCTGTGAAATGGGACTA
* * *
97846124 CTTACACAAGTTGTGAAATGGGACTA
1 CTCACACGAGCTGTGAAATGGGACTA
97846150 CTCACACGAGCTGTGAAATGGG
1 CTCACACGAGCTGTGAAATGGG
97846172 CTTGCTCACT
Statistics
Matches: 39, Mismatches: 9, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
26 39 1.00
ACGTcount: A:0.31, C:0.19, G:0.26, T:0.24
Consensus pattern (26 bp):
CTCACACGAGCTGTGAAATGGGACTA
Found at i:97847020 original size:41 final size:41
Alignment explanation
Indices: 97846931--97847071 Score: 169
Period size: 41 Copynumber: 3.5 Consensus size: 41
97846921 TATTCTACTT
* * *
97846931 AGGGATACCGAAGTACAAACAGT-G-ATAGTATGTGTAGTTC
1 AGGGGTACCGAAGTACAAACAGTGGCAT-GTATGTGCAATTC
* * *
97846971 AGGAGTACCGAAGTATAAACAGTGGCATGTATGTGCAATTT
1 AGGGGTACCGAAGTACAAACAGTGGCATGTATGTGCAATTC
* *
97847012 AGGGGTACCGAAGTACAAACAGGGGCATGTATATGCAATTC
1 AGGGGTACCGAAGTACAAACAGTGGCATGTATGTGCAATTC
* *
97847053 AGAGGTATCGAAGTACAAA
1 AGGGGTACCGAAGTACAAA
97847072 TAGGGGAAAT
Statistics
Matches: 86, Mismatches: 13, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
40 20 0.23
41 64 0.74
42 2 0.02
ACGTcount: A:0.36, C:0.13, G:0.28, T:0.23
Consensus pattern (41 bp):
AGGGGTACCGAAGTACAAACAGTGGCATGTATGTGCAATTC
Found at i:97850086 original size:42 final size:43
Alignment explanation
Indices: 97850005--97850098 Score: 120
Period size: 42 Copynumber: 2.2 Consensus size: 43
97849995 TCCAAGACGT
* *
97850005 GGTCTTACATGTAATCAAATATCGATGCCACTATCCCAGATAG
1 GGTCTTACATGAAATCAAATATCGATGCCACTATCCCAGACAG
* * *
97850048 GGTCTTACATGAAATCAAATA-CGATGCTGA-TGTCCCAGACAT
1 GGTCTTACATGAAATCAAATATCGATGC-CACTATCCCAGACAG
97850090 GGTCTTACA
1 GGTCTTACA
97850099 CGTAAATCTC
Statistics
Matches: 45, Mismatches: 5, Indels: 3
0.85 0.09 0.06
Matches are distributed among these distances:
42 24 0.53
43 21 0.47
ACGTcount: A:0.32, C:0.22, G:0.18, T:0.28
Consensus pattern (43 bp):
GGTCTTACATGAAATCAAATATCGATGCCACTATCCCAGACAG
Found at i:97850106 original size:43 final size:43
Alignment explanation
Indices: 97849986--97850106 Score: 131
Period size: 43 Copynumber: 2.8 Consensus size: 43
97849976 AGCTAGTACA
* *
97849986 ATGCCAATGTCCAAGACGTGGTCTTACATGT-AATCAAATATCG
1 ATGCC-ATGTCCCAGACATGGTCTTACATGTAAATCAAATATCG
* * *
97850029 ATGCCACTATCCCAGATAGGGTCTTACATG-AAATCAAATA-CG
1 ATGCCA-TGTCCCAGACATGGTCTTACATGTAAATCAAATATCG
* *
97850071 ATGCTGATGTCCCAGACATGGTCTTACACGTAAATC
1 ATGC-CATGTCCCAGACATGGTCTTACATGTAAATC
97850107 TCAAATCGAT
Statistics
Matches: 64, Mismatches: 10, Indels: 8
0.78 0.12 0.10
Matches are distributed among these distances:
42 26 0.41
43 38 0.59
ACGTcount: A:0.32, C:0.23, G:0.18, T:0.26
Consensus pattern (43 bp):
ATGCCATGTCCCAGACATGGTCTTACATGTAAATCAAATATCG
Found at i:97851874 original size:40 final size:40
Alignment explanation
Indices: 97851819--97851998 Score: 292
Period size: 40 Copynumber: 4.5 Consensus size: 40
97851809 TATTCGAATG
97851819 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
97851859 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
**
97851899 ATATCCGGGCTAAGTCCCGAAGGCATTCATGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* *
97851939 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAG-TGACT
*
97851979 ATATCC-GGCTAAATCCCGAA
1 ATATCCGGGCTAAGTCCCGAA
97851999 AATACTTGGG
Statistics
Matches: 131, Mismatches: 8, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
39 12 0.09
40 117 0.89
41 2 0.02
ACGTcount: A:0.24, C:0.24, G:0.26, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
Found at i:97855710 original size:49 final size:49
Alignment explanation
Indices: 97855638--97855735 Score: 187
Period size: 49 Copynumber: 2.0 Consensus size: 49
97855628 CAAAGATAGA
97855638 TTTGAGATCGAGCTATTATCAGTTGCGAATTCGAGATTCGGATATACCC
1 TTTGAGATCGAGCTATTATCAGTTGCGAATTCGAGATTCGGATATACCC
*
97855687 TTTGAGATCGAGCTATTATCAGTTGTGAATTCGAGATTCGGATATACCC
1 TTTGAGATCGAGCTATTATCAGTTGCGAATTCGAGATTCGGATATACCC
97855736 AAAACTGCTT
Statistics
Matches: 48, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
49 48 1.00
ACGTcount: A:0.27, C:0.17, G:0.22, T:0.34
Consensus pattern (49 bp):
TTTGAGATCGAGCTATTATCAGTTGCGAATTCGAGATTCGGATATACCC
Found at i:97859669 original size:40 final size:40
Alignment explanation
Indices: 97859528--97859754 Score: 246
Period size: 40 Copynumber: 5.5 Consensus size: 40
97859518 TATTCGAATG
*
97859528 ATATCCGGGCTAAGTCGCGAAGGCATTTGTGCGAGTAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGC---TAGTTGCT
* *
97859571 ATACCCGGGCTAAGTCCCGAAGGCATTTGTACGAGTAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGT--G-CTAGTTGCT
* *
97859614 ATA-CCTGGGCAAAGTCCTGAAGGCATTTGTGCTAG-TGACT
1 ATATCC-GGGCTAAGTCCCGAAGGCATTTGTGCTAGTTG-CT
**
97859654 ATATCCGGGCTAAGTCCCGAAGGCATTCATGCTAG-TGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTTG-CT
* *
97859694 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTTGCT
* *
97859734 ATATCC-GGCTAAATCCTGAAG
1 ATATCCGGGCTAAGTCCCGAAG
97859755 ATACTTGGGT
Statistics
Matches: 160, Mismatches: 17, Indels: 18
0.82 0.09 0.09
Matches are distributed among these distances:
39 14 0.09
40 77 0.48
41 5 0.03
42 2 0.01
43 61 0.38
45 1 0.01
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTTGCT
Found at i:97881693 original size:40 final size:40
Alignment explanation
Indices: 97881548--97881693 Score: 188
Period size: 40 Copynumber: 3.6 Consensus size: 40
97881538 GCTCCTCGTT
* *
97881548 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* *
97881588 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* * * *
97881628 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATATAGTAAC-TCGCA
97881669 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
97881694 CATCATTCAA
Statistics
Matches: 92, Mismatches: 11, Indels: 6
0.84 0.10 0.06
Matches are distributed among these distances:
39 3 0.03
40 78 0.85
41 11 0.12
ACGTcount: A:0.26, C:0.27, G:0.23, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
Found at i:97884080 original size:100 final size:100
Alignment explanation
Indices: 97883907--97884107 Score: 296
Period size: 100 Copynumber: 2.0 Consensus size: 100
97883897 AGTCTATCAA
** * * *
97883907 CAACAACCCAAATCGAATCCTTCTTACTTGCTGACAATGGCAGTCCGGACACAAAGTCCATTGTG
1 CAACAACCCAAATCGAATCCTTCTTACTTGCTGACAATGGCAACCCAGACACAAAATCCATCGTG
*
97883972 ACTCGATCCCATTTCCACTCGGGTATCATGATCGG
66 ACTCGATCCCATTTCCACTCAGGTATCATGATCGG
* * *
97884007 CAACAACCCAAATCGCATCTTTCTTACTTGCCT-ACAATGGCAACCCAGATACAAAATCCATCGT
1 CAACAACCCAAATCGAATCCTTCTTACTTG-CTGACAATGGCAACCCAGACACAAAATCCATCGT
*
97884071 GACTCGATCCCATTTCCATTCAGGTATCATGATCGG
65 GACTCGATCCCATTTCCACTCAGGTATCATGATCGG
97884107 C
1 C
97884108 TGAAGTAATC
Statistics
Matches: 90, Mismatches: 10, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
100 88 0.98
101 2 0.02
ACGTcount: A:0.28, C:0.31, G:0.15, T:0.25
Consensus pattern (100 bp):
CAACAACCCAAATCGAATCCTTCTTACTTGCTGACAATGGCAACCCAGACACAAAATCCATCGTG
ACTCGATCCCATTTCCACTCAGGTATCATGATCGG
Found at i:97889260 original size:40 final size:40
Alignment explanation
Indices: 97889216--97889477 Score: 370
Period size: 40 Copynumber: 6.6 Consensus size: 40
97889206 GCTCCTCGTT
* *
97889216 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAATTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
*
97889256 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
*
97889296 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
*
97889336 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* *
97889376 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * * *
97889415 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTAACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
97889456 CAAA-GCCTTCGGGACTTAGCCC
1 CAAATGCCTTCGGGACTTAGCCC
97889478 AGACATCATT
Statistics
Matches: 204, Mismatches: 13, Indels: 10
0.90 0.06 0.04
Matches are distributed among these distances:
38 2 0.01
39 33 0.16
40 156 0.76
41 13 0.06
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:97889469 original size:119 final size:120
Alignment explanation
Indices: 97889216--97889473 Score: 362
Period size: 119 Copynumber: 2.2 Consensus size: 120
97889206 GCTCCTCGTT
* * *
97889216 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAATTCGCACAAATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGGACTTAACCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
* * *
97889281 ATTTAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
66 AATTAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGATATAGTAACTAGCA
*
97889336 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCACAAATGCCTTCGGG-CTTAGCCCG
1 CAAATGCCTTCGGGACTTAACCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCG
* ** *
97889399 GAATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGTCCGGATATGGTAACTTAGCA
65 GAATTAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGGATATAGTAAC-TAGCA
97889456 CAAA-GCCTTCGGGACTTA
1 CAAATGCCTTCGGGACTTA
97889474 GCCCAGACAT
Statistics
Matches: 124, Mismatches: 11, Indels: 7
0.87 0.08 0.05
Matches are distributed among these distances:
118 3 0.02
119 63 0.51
120 56 0.45
121 2 0.02
ACGTcount: A:0.27, C:0.26, G:0.21, T:0.26
Consensus pattern (120 bp):
CAAATGCCTTCGGGACTTAACCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
AATTAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGATATAGTAACTAGCA
Found at i:97893118 original size:19 final size:19
Alignment explanation
Indices: 97893094--97893130 Score: 58
Period size: 19 Copynumber: 1.9 Consensus size: 19
97893084 AAAATGATAA
97893094 AAGAAAATGAGAAA-AAGAC
1 AAGAAAA-GAGAAAGAAGAC
97893113 AAGAAAAGAGAAAGAAGA
1 AAGAAAAGAGAAAGAAGA
97893131 AAAAGAAAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 6 0.35
19 11 0.65
ACGTcount: A:0.70, C:0.03, G:0.24, T:0.03
Consensus pattern (19 bp):
AAGAAAAGAGAAAGAAGAC
Found at i:97897005 original size:56 final size:56
Alignment explanation
Indices: 97896917--97897033 Score: 209
Period size: 56 Copynumber: 2.1 Consensus size: 56
97896907 TCTCCATGGC
*
97896917 CAAGAAGTTTCAAAGAAATTTCCTAAGCAAATCTGGAATTTTCTAGCTTAATTGGG
1 CAAGAAGTTTCAAAGAAATTTCCTAAGAAAATCTGGAATTTTCTAGCTTAATTGGG
*
97896973 CAAGAAGTTTCAAGGAAATTTCCTAAGAAAATCTGGAATTTTCTAGCTTAATTGGG
1 CAAGAAGTTTCAAAGAAATTTCCTAAGAAAATCTGGAATTTTCTAGCTTAATTGGG
97897029 -AAGAA
1 CAAGAA
97897034 AACAAAAGGT
Statistics
Matches: 59, Mismatches: 2, Indels: 1
0.95 0.03 0.02
Matches are distributed among these distances:
55 5 0.08
56 54 0.92
ACGTcount: A:0.38, C:0.13, G:0.19, T:0.31
Consensus pattern (56 bp):
CAAGAAGTTTCAAAGAAATTTCCTAAGAAAATCTGGAATTTTCTAGCTTAATTGGG
Found at i:97899420 original size:30 final size:29
Alignment explanation
Indices: 97899372--97899435 Score: 110
Period size: 30 Copynumber: 2.2 Consensus size: 29
97899362 CAAGTAGCCG
*
97899372 AAGCTAGTTAAATTGCACACTTAGTGCCA
1 AAGCTAGTTAAATCGCACACTTAGTGCCA
97899401 AAGCTAGTTTAAATCGCACACTTAGTGCCA
1 AAGCTAG-TTAAATCGCACACTTAGTGCCA
97899431 AAGCT
1 AAGCT
97899436 TCCGATTCAT
Statistics
Matches: 33, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
29 7 0.21
30 26 0.79
ACGTcount: A:0.34, C:0.22, G:0.17, T:0.27
Consensus pattern (29 bp):
AAGCTAGTTAAATCGCACACTTAGTGCCA
Found at i:97900686 original size:51 final size:51
Alignment explanation
Indices: 97900610--97900711 Score: 204
Period size: 51 Copynumber: 2.0 Consensus size: 51
97900600 ACTTTCTGTT
97900610 CAGTTTCCTTTATCAAGTCAACCCCATGAATCTTATTTTCGTTGAGCTCTG
1 CAGTTTCCTTTATCAAGTCAACCCCATGAATCTTATTTTCGTTGAGCTCTG
97900661 CAGTTTCCTTTATCAAGTCAACCCCATGAATCTTATTTTCGTTGAGCTCTG
1 CAGTTTCCTTTATCAAGTCAACCCCATGAATCTTATTTTCGTTGAGCTCTG
97900712 TCCAATACAA
Statistics
Matches: 51, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
51 51 1.00
ACGTcount: A:0.22, C:0.25, G:0.14, T:0.39
Consensus pattern (51 bp):
CAGTTTCCTTTATCAAGTCAACCCCATGAATCTTATTTTCGTTGAGCTCTG
Found at i:97905194 original size:28 final size:28
Alignment explanation
Indices: 97905162--97905219 Score: 98
Period size: 28 Copynumber: 2.1 Consensus size: 28
97905152 GTGTGCCTTA
*
97905162 CACGGGTATCAGACACACCCATGCGACC
1 CACGGGTATCAAACACACCCATGCGACC
*
97905190 CACGGGTATCAAACACACCCATGTGACC
1 CACGGGTATCAAACACACCCATGCGACC
97905218 CA
1 CA
97905220 GCTGCACCAA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.31, C:0.38, G:0.19, T:0.12
Consensus pattern (28 bp):
CACGGGTATCAAACACACCCATGCGACC
Found at i:97909317 original size:40 final size:40
Alignment explanation
Indices: 97909243--97910224 Score: 1725
Period size: 40 Copynumber: 24.6 Consensus size: 40
97909233 AACCCAAGTA
* *
97909243 CCTTCGGGATTTAG-CCGGATATAG-CAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATG
*
97909282 CCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
*
97909322 CCTTCGGGACTTAGCCCGGATATAGTTACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
*
97909362 CCTTCGAGACTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
*
97909402 CCTTCGGGACTTAGCCCGGATATAGTTACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
*
97909442 CCTTCGAGACTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
*
97909482 CCTTCGGGACTTAGCCCGGATATAGTTACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
*
97909522 CCTTCGAGACTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
*
97909562 CCTTCGGGACTTAGCCCGGATATAGTTACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
*
97909602 CCTTCGAGACTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
*
97909642 CCTTCGGGACTTAGCCCGGATATAGTTACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
*
97909682 CCTTCGAGACTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
*
97909722 CCTTCGGGACTTAGCCCGGATATAGTTACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
*
97909762 CCTTCGAGACTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
*
97909802 CCTTCGGGACTTAGCCCGGATATAGTTACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
*
97909842 CCTTCGAGACTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
*
97909882 CCTTCGGGACTTAGCCCGGATATAGTTACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
*
97909922 CCTTCGAGACTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
*
97909962 CCTTCGGGACTTAGCCCGGATATAGTTACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
*
97910002 CCTTCGAGACTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
*
97910042 CCTTCGGGACTTAGCCCGGATATAGTTACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
*
97910082 CCTTCGAGACTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
97910122 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
97910162 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
*
97910202 CCTTCGAGACTTAGCCCGGATAT
1 CCTTCGGGACTTAGCCCGGATAT
97910225 CATTCGAATA
Statistics
Matches: 896, Mismatches: 45, Indels: 3
0.95 0.05 0.00
Matches are distributed among these distances:
39 12 0.01
40 883 0.99
41 1 0.00
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
Found at i:97912973 original size:19 final size:19
Alignment explanation
Indices: 97912949--97912985 Score: 58
Period size: 19 Copynumber: 1.9 Consensus size: 19
97912939 AAAATGATAA
97912949 AAGAAAATGAGAAA-AAGAC
1 AAGAAAA-GAGAAAGAAGAC
97912968 AAGAAAAGAGAAAGAAGA
1 AAGAAAAGAGAAAGAAGA
97912986 AAAAGAAAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 6 0.35
19 11 0.65
ACGTcount: A:0.70, C:0.03, G:0.24, T:0.03
Consensus pattern (19 bp):
AAGAAAAGAGAAAGAAGAC
Found at i:97926045 original size:47 final size:47
Alignment explanation
Indices: 97925967--97926468 Score: 797
Period size: 47 Copynumber: 10.6 Consensus size: 47
97925957 CCCTTCGGGA
* * * * * *
97925967 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
97926014 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
97926061 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
97926110 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
97926159 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
97926206 CTCATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
97926253 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
97926300 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
97926349 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
97926396 CTTATCACATATATACACTTTCACATTCTTCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
97926443 CTTATCACATATATATACATTCACAT
1 CTTATCACATATATACACTTTCACAT
97926469 CACAATTATC
Statistics
Matches: 426, Mismatches: 25, Indels: 8
0.93 0.05 0.02
Matches are distributed among these distances:
47 287 0.67
49 139 0.33
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Done.