Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr3
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 100348136
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 3062571 characters in sequence are not A, C, G, or T
File 285 of 290
Found at i:98432376 original size:3 final size:3
Alignment explanation
Indices: 98432368--98432410 Score: 70
Period size: 3 Copynumber: 14.3 Consensus size: 3
98432358 TATTTAACAA
98432368 AAT AAT AAT -AT CAAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A
1 AAT AAT AAT AAT -AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A
98432411 TAAATGTATA
Statistics
Matches: 38, Mismatches: 0, Indels: 4
0.90 0.00 0.10
Matches are distributed among these distances:
2 2 0.05
3 34 0.89
4 2 0.05
ACGTcount: A:0.65, C:0.02, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:98435335 original size:26 final size:26
Alignment explanation
Indices: 98435291--98435341 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
98435281 TTTCTCTTAA
*
98435291 TTTTTAATTGTATTCAATTAATTAATT
1 TTTTTAATTGCATTCAATT-ATTAATT
*
98435318 TTTTTAATT-CATTGAATTATTAAT
1 TTTTTAATTGCATTCAATTATTAAT
98435342 AATTTTTATT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
25 6 0.27
26 7 0.32
27 9 0.41
ACGTcount: A:0.33, C:0.04, G:0.04, T:0.59
Consensus pattern (26 bp):
TTTTTAATTGCATTCAATTATTAATT
Found at i:98435347 original size:25 final size:27
Alignment explanation
Indices: 98435292--98435347 Score: 62
Period size: 25 Copynumber: 2.1 Consensus size: 27
98435282 TTCTCTTAAT
* **
98435292 TTTTAATTGTATTCAATTAATTAATTT
1 TTTTAATTGCATTCAATTAATTAATAA
*
98435319 TTTTAATT-CATTGAATT-ATTAATAA
1 TTTTAATTGCATTCAATTAATTAATAA
98435344 TTTT
1 TTTT
98435348 TATTAAATCT
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
25 10 0.40
26 7 0.28
27 8 0.32
ACGTcount: A:0.34, C:0.04, G:0.04, T:0.59
Consensus pattern (27 bp):
TTTTAATTGCATTCAATTAATTAATAA
Found at i:98435347 original size:26 final size:28
Alignment explanation
Indices: 98435288--98435349 Score: 76
Period size: 26 Copynumber: 2.3 Consensus size: 28
98435278 AGTTTTCTCT
*
98435288 TAATTTTTAATTGTATTCAATTAATTAA
1 TAATTTTTAATTGCATTCAATTAATTAA
* *
98435316 T-TTTTTTAATT-CATTGAATT-ATTAA
1 TAATTTTTAATTGCATTCAATTAATTAA
98435341 TAATTTTTA
1 TAATTTTTA
98435350 TTAAATCTTA
Statistics
Matches: 29, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
25 6 0.21
26 13 0.45
27 9 0.31
28 1 0.03
ACGTcount: A:0.35, C:0.03, G:0.03, T:0.58
Consensus pattern (28 bp):
TAATTTTTAATTGCATTCAATTAATTAA
Found at i:98437879 original size:19 final size:18
Alignment explanation
Indices: 98437841--98437881 Score: 55
Period size: 18 Copynumber: 2.2 Consensus size: 18
98437831 TTCTTGTCGA
* *
98437841 AAAATAATTAAATATTAT
1 AAAATAATTAAACATGAT
98437859 AAAATAATTAAACCATGAT
1 AAAATAATTAAA-CATGAT
98437878 AAAA
1 AAAA
98437882 ATATGAACAT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
18 12 0.60
19 8 0.40
ACGTcount: A:0.63, C:0.05, G:0.02, T:0.29
Consensus pattern (18 bp):
AAAATAATTAAACATGAT
Found at i:98449939 original size:125 final size:125
Alignment explanation
Indices: 98449717--98449968 Score: 504
Period size: 125 Copynumber: 2.0 Consensus size: 125
98449707 CTAGACCGGT
98449717 ATTTCTTCAGAAAATTTGCGAAGCTCAAAAAAGTGATAATGAGTTGTAAGCTAAAAGAGTTCAGT
1 ATTTCTTCAGAAAATTTGCGAAGCTCAAAAAAGTGATAATGAGTTGTAAGCTAAAAGAGTTCAGT
98449782 GCCAAACGAATTGTGATCCAGACTATCAAATTGGATTTGATGATTGTTTGAGGTTTCGAG
66 GCCAAACGAATTGTGATCCAGACTATCAAATTGGATTTGATGATTGTTTGAGGTTTCGAG
98449842 ATTTCTTCAGAAAATTTGCGAAGCTCAAAAAAGTGATAATGAGTTGTAAGCTAAAAGAGTTCAGT
1 ATTTCTTCAGAAAATTTGCGAAGCTCAAAAAAGTGATAATGAGTTGTAAGCTAAAAGAGTTCAGT
98449907 GCCAAACGAATTGTGATCCAGACTATCAAATTGGATTTGATGATTGTTTGAGGTTTCGAG
66 GCCAAACGAATTGTGATCCAGACTATCAAATTGGATTTGATGATTGTTTGAGGTTTCGAG
98449967 AT
1 AT
98449969 AGGATTTGTG
Statistics
Matches: 127, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
125 127 1.00
ACGTcount: A:0.35, C:0.12, G:0.22, T:0.31
Consensus pattern (125 bp):
ATTTCTTCAGAAAATTTGCGAAGCTCAAAAAAGTGATAATGAGTTGTAAGCTAAAAGAGTTCAGT
GCCAAACGAATTGTGATCCAGACTATCAAATTGGATTTGATGATTGTTTGAGGTTTCGAG
Found at i:98454928 original size:26 final size:22
Alignment explanation
Indices: 98454906--98454951 Score: 76
Period size: 21 Copynumber: 2.1 Consensus size: 22
98454896 ATATATCATG
98454906 AAATATTTGATAATCCAAATATC
1 AAAT-TTTGATAATCCAAATATC
98454929 -AATTTTGATAATCCAAATATC
1 AAATTTTGATAATCCAAATATC
98454950 AA
1 AA
98454952 TTATACATTA
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
21 18 0.82
22 4 0.18
ACGTcount: A:0.48, C:0.13, G:0.04, T:0.35
Consensus pattern (22 bp):
AAATTTTGATAATCCAAATATC
Found at i:98454935 original size:21 final size:21
Alignment explanation
Indices: 98454911--98454953 Score: 86
Period size: 21 Copynumber: 2.0 Consensus size: 21
98454901 TCATGAAATA
98454911 TTTGATAATCCAAATATCAAT
1 TTTGATAATCCAAATATCAAT
98454932 TTTGATAATCCAAATATCAAT
1 TTTGATAATCCAAATATCAAT
98454953 T
1 T
98454954 ATACATTACA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.42, C:0.14, G:0.05, T:0.40
Consensus pattern (21 bp):
TTTGATAATCCAAATATCAAT
Found at i:98458096 original size:177 final size:178
Alignment explanation
Indices: 98457800--98458129 Score: 456
Period size: 177 Copynumber: 1.9 Consensus size: 178
98457790 ATTATTAATT
* * * *
98457800 TAGTTGTACTATTTACATGCAACTTACCTCGGATTACAAAATGTGGCAACTAATCGATTTAGTCG
1 TAGTTGTACTATTTACATACAACTTACCTCAGATTACAAAATGTAGCAACTAATCGATTTAATCG
*
98457865 ATTTGCTTGGCTTTCCCTCGGTCTAGGTTCAAATTCTGTATTTCTTGATCTATAAT-GAAAAAAT
66 ATTTGCTTGGCTTTCCCTCGGTCTAAGTTCAAATTCTGTATTTCTTGATCTATAATCG-AAAAAT
98457929 GCAC-TATTTAATCACTAAATAAACAATTCAACACATACATTAACATTG
130 GCACTTATTTAATCACTAAATAAACAATTCAACACATACATTAACATTG
* * *
98457977 TAGTTGTATTATTTACATACAACTTACCTCAGATTACAAAATGTAGCGACTAGTCGATTTAATCG
1 TAGTTGTACTATTTACATACAACTTACCTCAGATTACAAAATGTAGCAACTAATCGATTTAATCG
*** *
98458042 ATTTGCTTGGCTTTCCC-CTGG-CTTAAGTTTGGATT-TGGTGA-TTCTTGATCTATAATCGCAA
66 ATTTGCTTGGCTTTCCCTC-GGTC-TAAGTTCAAATTCT-GT-ATTTCTTGATCTATAATCGAAA
*
98458103 AATGCACTTATTTAGTCACTAAATAAA
127 AATGCACTTATTTAATCACTAAATAAA
98458130 ATTAAGCAAT
Statistics
Matches: 134, Mismatches: 13, Indels: 11
0.85 0.08 0.07
Matches are distributed among these distances:
176 3 0.02
177 111 0.83
178 20 0.15
ACGTcount: A:0.31, C:0.18, G:0.14, T:0.37
Consensus pattern (178 bp):
TAGTTGTACTATTTACATACAACTTACCTCAGATTACAAAATGTAGCAACTAATCGATTTAATCG
ATTTGCTTGGCTTTCCCTCGGTCTAAGTTCAAATTCTGTATTTCTTGATCTATAATCGAAAAATG
CACTTATTTAATCACTAAATAAACAATTCAACACATACATTAACATTG
Found at i:98462706 original size:17 final size:19
Alignment explanation
Indices: 98462686--98462723 Score: 62
Period size: 17 Copynumber: 2.1 Consensus size: 19
98462676 AAGTGAATTG
98462686 AAATTGC-GAAATT-AAAT
1 AAATTGCAGAAATTGAAAT
98462703 AAATTGCAGAAATTGAAAT
1 AAATTGCAGAAATTGAAAT
98462722 AA
1 AA
98462724 TGAAAAATAA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
17 7 0.37
18 6 0.32
19 6 0.32
ACGTcount: A:0.55, C:0.05, G:0.13, T:0.26
Consensus pattern (19 bp):
AAATTGCAGAAATTGAAAT
Found at i:98463474 original size:19 final size:18
Alignment explanation
Indices: 98463450--98463493 Score: 54
Period size: 17 Copynumber: 2.4 Consensus size: 18
98463440 ATAAATAAAG
98463450 ATAATTAAAATAAAATCCTA
1 ATAATTAAAAT--AATCCTA
*
98463470 A-AATTTAAATAATCCTA
1 ATAATTAAAATAATCCTA
98463487 ATAATTA
1 ATAATTA
98463494 TCTTAATATT
Statistics
Matches: 21, Mismatches: 2, Indels: 4
0.78 0.07 0.15
Matches are distributed among these distances:
17 8 0.38
18 4 0.19
19 8 0.38
20 1 0.05
ACGTcount: A:0.57, C:0.09, G:0.00, T:0.34
Consensus pattern (18 bp):
ATAATTAAAATAATCCTA
Found at i:98463508 original size:15 final size:15
Alignment explanation
Indices: 98463488--98463517 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
98463478 ATAATCCTAA
*
98463488 TAATTATCTTAATAT
1 TAATTATCCTAATAT
98463503 TAATTATCCTAATAT
1 TAATTATCCTAATAT
98463518 AAATAAAATG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.40, C:0.10, G:0.00, T:0.50
Consensus pattern (15 bp):
TAATTATCCTAATAT
Found at i:98491176 original size:72 final size:72
Alignment explanation
Indices: 98491059--98491242 Score: 359
Period size: 72 Copynumber: 2.6 Consensus size: 72
98491049 ACAACTTGAC
*
98491059 AACTTAGTTGGAATACAACTAAGTTTCATCATTACATCCACTTAAAATAAATCACCACCTACTAC
1 AACTTAGTTGGAATACAACTAAGTTACATCATTACATCCACTTAAAATAAATCACCACCTACTAC
98491124 ACTAACA
66 ACTAACA
98491131 AACTTAGTTGGAATACAACTAAGTTACATCATTACATCCACTTAAAATAAATCACCACCTACTAC
1 AACTTAGTTGGAATACAACTAAGTTACATCATTACATCCACTTAAAATAAATCACCACCTACTAC
98491196 ACTAACA
66 ACTAACA
98491203 AACTTAGTTGGAATACAACTAAGTTACATCATTACATCCA
1 AACTTAGTTGGAATACAACTAAGTTACATCATTACATCCA
98491243 AATAATAATA
Statistics
Matches: 111, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
72 111 1.00
ACGTcount: A:0.42, C:0.24, G:0.07, T:0.28
Consensus pattern (72 bp):
AACTTAGTTGGAATACAACTAAGTTACATCATTACATCCACTTAAAATAAATCACCACCTACTAC
ACTAACA
Found at i:98491251 original size:3 final size:3
Alignment explanation
Indices: 98491243--98491286 Score: 88
Period size: 3 Copynumber: 14.7 Consensus size: 3
98491233 ATTACATCCA
98491243 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
98491287 AACATGTGAT
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 41 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:98495622 original size:72 final size:72
Alignment explanation
Indices: 98495505--98495760 Score: 503
Period size: 72 Copynumber: 3.6 Consensus size: 72
98495495 ACAAATTGAC
*
98495505 AACTTAGTTGGAATACAACTAAGTTTCATCATTACATCCACTTAAAATAAATCACCACCTACTAC
1 AACTTAGTTGGAATACAACTAAGTTACATCATTACATCCACTTAAAATAAATCACCACCTACTAC
98495570 ACTAACA
66 ACTAACA
98495577 AACTTAGTTGGAATACAACTAAGTTACATCATTACATCCACTTAAAATAAATCACCACCTACTAC
1 AACTTAGTTGGAATACAACTAAGTTACATCATTACATCCACTTAAAATAAATCACCACCTACTAC
98495642 ACTAACA
66 ACTAACA
98495649 AACTTAGTTGGAATACAACTAAGTTACATCATTACATCCACTTAAAATAAATCACCACCTACTAC
1 AACTTAGTTGGAATACAACTAAGTTACATCATTACATCCACTTAAAATAAATCACCACCTACTAC
98495714 ACTAACA
66 ACTAACA
98495721 AACTTAGTTGGAATACAACTAAGTTACATCATTACATCCA
1 AACTTAGTTGGAATACAACTAAGTTACATCATTACATCCA
98495761 AATAATAATA
Statistics
Matches: 183, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
72 183 1.00
ACGTcount: A:0.42, C:0.24, G:0.06, T:0.27
Consensus pattern (72 bp):
AACTTAGTTGGAATACAACTAAGTTACATCATTACATCCACTTAAAATAAATCACCACCTACTAC
ACTAACA
Found at i:98495769 original size:3 final size:3
Alignment explanation
Indices: 98495761--98495789 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
98495751 ATTACATCCA
98495761 AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
98495790 AACATGTGAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:98497956 original size:66 final size:66
Alignment explanation
Indices: 98497866--98497993 Score: 202
Period size: 66 Copynumber: 1.9 Consensus size: 66
98497856 ACCTACAAAG
* * *
98497866 TACTTATCCAAGTAATTTCTTAAAATCTTAGATGATGATCAAACTAGTTTTTTAGATCAGTTTAA
1 TACTTAGCCAAGTAATTTCCTAAAATCTTAGATGATGATCAAACTAGTTTGTTAGATCAGTTTAA
98497931 T
66 T
* * *
98497932 TACTTAGCCAAGTAATTTCCTAAAATCTTTGTTGATGATCAAACTTGTTTGTTAGATCAGTT
1 TACTTAGCCAAGTAATTTCCTAAAATCTTAGATGATGATCAAACTAGTTTGTTAGATCAGTT
98497994 CAATCCAAAA
Statistics
Matches: 56, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
66 56 1.00
ACGTcount: A:0.32, C:0.13, G:0.12, T:0.42
Consensus pattern (66 bp):
TACTTAGCCAAGTAATTTCCTAAAATCTTAGATGATGATCAAACTAGTTTGTTAGATCAGTTTAA
T
Found at i:98505044 original size:55 final size:54
Alignment explanation
Indices: 98504957--98505211 Score: 269
Period size: 55 Copynumber: 4.8 Consensus size: 54
98504947 ATTAGGGTTT
* *
98504957 AAGGATACCATGTAAGACCATGCCAAGGCATGGCAATTAGTAAGGTTTCTAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAA-GTTTCTAAGGC
* * * * *
98505012 AAGGAAATCATGTAAGACCATGTCAAGACATGGC-ATTGATAAGTTACTATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAAGTT--TCTAAGGC
* * *
98505067 AAAGG-TCCCATGTAAGACCATGCCAAGGCATGGC-ATTGGTGAG-TTCATAAGGC
1 -AAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAAGTTTC-TAAGGC
*
98505120 AAGGATACCATGTAAGACCATGTCAAGACATGGCAA-TGGTAAGTTTC-AA---
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAAGTTTCTAAGGC
* * *
98505169 AAGGATACCACGTAAGACCATGACAAGTCATGGCAA-TGGTAAG
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAAG
98505212 GTACCCGTGT
Statistics
Matches: 171, Mismatches: 22, Indels: 20
0.80 0.10 0.09
Matches are distributed among these distances:
49 40 0.23
52 7 0.04
53 41 0.24
54 11 0.06
55 68 0.40
56 4 0.02
ACGTcount: A:0.36, C:0.18, G:0.25, T:0.21
Consensus pattern (54 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAAGTTTCTAAGGC
Found at i:98505163 original size:108 final size:110
Alignment explanation
Indices: 98504964--98505164 Score: 318
Period size: 108 Copynumber: 1.8 Consensus size: 110
98504954 TTTAAGGATA
*
98504964 CCATGTAAGACCATGCCAAGGCATGGCAATTAGTAAGGTTTCTAAGGCAAGGAAATCATGTAAGA
1 CCATGTAAGACCATGCCAAGGCATGGCAATTAGTAAGGTTTCTAAGGCAAGGAAACCATGTAAGA
*
98505029 CCATGTCAAGACATGGCATTGATAAGTTACTATAAGGCAAAGGTC
66 CCATGTCAAGACATGGCAATGATAAGTTACTATAAGGCAAAGGTC
* * *
98505074 CCATGTAAGACCATGCCAAGGCATGGC-ATTGGTGA-G-TTCATAAGGCAAGGATACCATGTAAG
1 CCATGTAAGACCATGCCAAGGCATGGCAATTAGTAAGGTTTC-TAAGGCAAGGAAACCATGTAAG
*
98505136 ACCATGTCAAGACATGGCAATGGTAAGTT
65 ACCATGTCAAGACATGGCAATGATAAGTT
98505165 TCAAAAGGAT
Statistics
Matches: 84, Mismatches: 6, Indels: 4
0.89 0.06 0.04
Matches are distributed among these distances:
107 3 0.04
108 48 0.57
109 6 0.07
110 27 0.32
ACGTcount: A:0.35, C:0.18, G:0.25, T:0.22
Consensus pattern (110 bp):
CCATGTAAGACCATGCCAAGGCATGGCAATTAGTAAGGTTTCTAAGGCAAGGAAACCATGTAAGA
CCATGTCAAGACATGGCAATGATAAGTTACTATAAGGCAAAGGTC
Found at i:98505424 original size:16 final size:16
Alignment explanation
Indices: 98505403--98505433 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
98505393 ATAAATTTGA
98505403 TTAAGTAAGTAAGTAT
1 TTAAGTAAGTAAGTAT
*
98505419 TTAAGTAAGTGAGTA
1 TTAAGTAAGTAAGTA
98505434 AGTGAAGAAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.00, G:0.23, T:0.35
Consensus pattern (16 bp):
TTAAGTAAGTAAGTAT
Found at i:98510284 original size:17 final size:17
Alignment explanation
Indices: 98510262--98510297 Score: 63
Period size: 17 Copynumber: 2.1 Consensus size: 17
98510252 AAGAGAAGGG
*
98510262 AACTAAGAAGCAAATCC
1 AACTAAGAAACAAATCC
98510279 AACTAAGAAACAAATCC
1 AACTAAGAAACAAATCC
98510296 AA
1 AA
98510298 TGTTTCTTTG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.58, C:0.22, G:0.08, T:0.11
Consensus pattern (17 bp):
AACTAAGAAACAAATCC
Found at i:98512662 original size:25 final size:27
Alignment explanation
Indices: 98512625--98512677 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 27
98512615 TCAAACATGC
98512625 ATTTAGGTCAATTTAAC-CCTAGGGGT
1 ATTTAGGTCAATTTAACTCCTAGGGGT
* *
98512651 ATTTCGGT-AATTTATCTCCTAGGGGT
1 ATTTAGGTCAATTTAACTCCTAGGGGT
98512677 A
1 A
98512678 AAACTGTAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.25, C:0.15, G:0.23, T:0.38
Consensus pattern (27 bp):
ATTTAGGTCAATTTAACTCCTAGGGGT
Found at i:98514469 original size:15 final size:15
Alignment explanation
Indices: 98514445--98514474 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
98514435 ATTTTTGAGC
98514445 ATTTGATACTTCTTT
1 ATTTGATACTTCTTT
*
98514460 ATTTGGTACTTCTTT
1 ATTTGATACTTCTTT
98514475 TCAACTCCCC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.17, C:0.13, G:0.10, T:0.60
Consensus pattern (15 bp):
ATTTGATACTTCTTT
Found at i:98515297 original size:24 final size:24
Alignment explanation
Indices: 98515252--98515297 Score: 56
Period size: 24 Copynumber: 1.9 Consensus size: 24
98515242 AATAAATTCC
* *
98515252 TAAAAGATCTTAAAACTAAAAACT
1 TAAAAGATCATAAAAATAAAAACT
* *
98515276 TAAAATATCATAAAAATTAAAA
1 TAAAAGATCATAAAAATAAAAA
98515298 TAAAGTATGT
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
24 18 1.00
ACGTcount: A:0.63, C:0.09, G:0.02, T:0.26
Consensus pattern (24 bp):
TAAAAGATCATAAAAATAAAAACT
Found at i:98518479 original size:30 final size:30
Alignment explanation
Indices: 98518445--98518503 Score: 109
Period size: 30 Copynumber: 2.0 Consensus size: 30
98518435 ATTTTCGAGC
*
98518445 CTAGGGGCAAAATGGTCATTTTGCCAAGGT
1 CTAGGGGCAAAATGGTCATTTTACCAAGGT
98518475 CTAGGGGCAAAATGGTCATTTTACCAAGG
1 CTAGGGGCAAAATGGTCATTTTACCAAGG
98518504 ATGTGAATTT
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.29, C:0.17, G:0.29, T:0.25
Consensus pattern (30 bp):
CTAGGGGCAAAATGGTCATTTTACCAAGGT
Found at i:98518947 original size:47 final size:45
Alignment explanation
Indices: 98518834--98518962 Score: 154
Period size: 47 Copynumber: 2.8 Consensus size: 45
98518824 GTCACTTGTG
* * * *
98518834 GGTGCTAGTGTAAGACATATCTGGGACATGCATCGGCCACATTAT
1 GGTGCTAGTGTAAGACATGTTTGGGACATGCATCGGCCACATGAC
98518879 GGTAGCTAGTGTAAGACCATGTTTGGGACATGGCATCGG-CAC-TGAGAC
1 GGT-GCTAGTGTAAGA-CATGTTTGGGACAT-GCATCGGCCACAT--GAC
98518927 GAGTGCTAGTGTAAGACATGTTTGGGACATGCATCG
1 G-GTGCTAGTGTAAGACATGTTTGGGACATGCATCG
98518963 ACCTCGAGTT
Statistics
Matches: 74, Mismatches: 4, Indels: 11
0.83 0.04 0.12
Matches are distributed among these distances:
45 3 0.04
46 19 0.26
47 29 0.39
48 21 0.28
49 2 0.03
ACGTcount: A:0.26, C:0.18, G:0.31, T:0.26
Consensus pattern (45 bp):
GGTGCTAGTGTAAGACATGTTTGGGACATGCATCGGCCACATGAC
Found at i:98518986 original size:46 final size:46
Alignment explanation
Indices: 98518837--98519050 Score: 172
Period size: 46 Copynumber: 4.6 Consensus size: 46
98518827 ACTTGTGGGT
* * *
98518837 GCTAGTGTAAGACATATCTGGGACATGCATCGGCCAC-ATTATGGT-A
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGT-T-GTAA
* ** *
98518883 GCTAGTGTAAGACCATGTTTGGGACATGGCATCGGCACT-GAGACG-AGT
1 GCTAGTGTAAGA-CATGTCTGGGACAT-GCATCGGC-CTCGAGTTGTA-A
* *
98518931 GCTAGTGTAAGACATGTTTGGGACATGCATCGACCTCGAGTTGTAA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGTTGTAA
* * * *
98518977 GCCAGTGTAAAACATGTCTGGGACATGCATCGG-CTACAAGATG-ATA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCT-CGAGTTGTA-A
98519023 G-TCAGTGTAAGACCATGTCTGGGACATG
1 GCT-AGTGTAAGA-CATGTCTGGGACATG
98519051 GGATCAAAAC
Statistics
Matches: 137, Mismatches: 19, Indels: 23
0.77 0.11 0.13
Matches are distributed among these distances:
45 5 0.04
46 67 0.49
47 43 0.31
48 20 0.15
49 2 0.01
ACGTcount: A:0.28, C:0.19, G:0.29, T:0.25
Consensus pattern (46 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGTTGTAA
Found at i:98536410 original size:46 final size:46
Alignment explanation
Indices: 98536218--98536428 Score: 146
Period size: 46 Copynumber: 4.5 Consensus size: 46
98536208 TGGGGGTGCT
** * ** * **
98536218 AGTGTAAGACATGTCTGGGACATGCATTGGCCACATTATGGAAGGT
1 AGTGTAAGACATGTCTGGGACATGCATCAGCCTCAAGATGTAAGCC
* * * *
98536264 AGTGTAAGACCGTGTCTGGGACATGGCATCGGCACTGAGACGA-GT--GCT
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCAGC-CTCA-A-GATGTAAGCC
*
98536312 AGTGTAAGACATGTCTGGGACATGCATCAGCCTCAATATGTAAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCAGCCTCAAGATGTAAGCC
* * * *
98536358 AATGTAAGACATGTCTGGGACAT-CTATC-GGCTACGAGATG-ATAGTC
1 AGTGTAAGACATGTCTGGGACATGC-ATCAGCCT-CAAGATGTA-AGCC
98536404 AGTGTAAGACCATGTCTGGGACATG
1 AGTGTAAGA-CATGTCTGGGACATG
98536429 GCATTGGACC
Statistics
Matches: 133, Mismatches: 19, Indels: 24
0.76 0.11 0.14
Matches are distributed among these distances:
43 1 0.01
44 3 0.02
45 8 0.06
46 59 0.44
47 40 0.30
48 18 0.14
49 2 0.02
50 1 0.01
51 1 0.01
ACGTcount: A:0.28, C:0.18, G:0.29, T:0.24
Consensus pattern (46 bp):
AGTGTAAGACATGTCTGGGACATGCATCAGCCTCAAGATGTAAGCC
Found at i:98540354 original size:26 final size:26
Alignment explanation
Indices: 98540311--98540368 Score: 89
Period size: 26 Copynumber: 2.2 Consensus size: 26
98540301 AAAAATAAGT
*
98540311 TTGGGTACTGTTTCCTCATAGCTTCC
1 TTGGGTACTATTTCCTCATAGCTTCC
*
98540337 TTGGGTACTATTTTCTCATAGCTTCC
1 TTGGGTACTATTTCCTCATAGCTTCC
*
98540363 TCGGGT
1 TTGGGT
98540369 TCCCATATAG
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.12, C:0.24, G:0.21, T:0.43
Consensus pattern (26 bp):
TTGGGTACTATTTCCTCATAGCTTCC
Found at i:98550608 original size:42 final size:43
Alignment explanation
Indices: 98550543--98550662 Score: 134
Period size: 50 Copynumber: 2.6 Consensus size: 43
98550533 CATCGACTTA
* *
98550543 TGATTTACGTGTAAGACCATGTCTGGGACAC-CGGCATCGTATT
1 TGATTT-CGTCTAAGACCCTGTCTGGGACACACGGCATCGTATT
*
98550586 TGATTTCGTCTAAGACCCTGTCTGGGATAGTGACACGATGGCATCGTATT
1 TGATTTCGTCTAAGACCCTGTCT--G---G-GACAC-ACGGCATCGTATT
98550636 TGATTTCGTCTAAGACCCTGTCTGGGA
1 TGATTTCGTCTAAGACCCTGTCTGGGA
98550663 TAGTGACACG
Statistics
Matches: 66, Mismatches: 3, Indels: 15
0.79 0.04 0.18
Matches are distributed among these distances:
42 15 0.23
43 6 0.09
44 3 0.05
45 1 0.02
47 1 0.02
48 6 0.09
50 34 0.52
ACGTcount: A:0.22, C:0.21, G:0.26, T:0.32
Consensus pattern (43 bp):
TGATTTCGTCTAAGACCCTGTCTGGGACACACGGCATCGTATT
Found at i:98550642 original size:50 final size:50
Alignment explanation
Indices: 98550575--98550674 Score: 200
Period size: 50 Copynumber: 2.0 Consensus size: 50
98550565 CTGGGACACC
98550575 GGCATCGTATTTGATTTCGTCTAAGACCCTGTCTGGGATAGTGACACGAT
1 GGCATCGTATTTGATTTCGTCTAAGACCCTGTCTGGGATAGTGACACGAT
98550625 GGCATCGTATTTGATTTCGTCTAAGACCCTGTCTGGGATAGTGACACGAT
1 GGCATCGTATTTGATTTCGTCTAAGACCCTGTCTGGGATAGTGACACGAT
98550675 ATTTGATTAC
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
50 50 1.00
ACGTcount: A:0.22, C:0.20, G:0.26, T:0.32
Consensus pattern (50 bp):
GGCATCGTATTTGATTTCGTCTAAGACCCTGTCTGGGATAGTGACACGAT
Found at i:98550679 original size:92 final size:94
Alignment explanation
Indices: 98550530--98550704 Score: 207
Period size: 92 Copynumber: 1.9 Consensus size: 94
98550520 TCTAGGACGT
* * * *
98550530 TGGCATCGACTTATGATTTACGTGTAAGACCATGTCTGGGACACCGGCATCGTATTTGATTTCGT
1 TGGCATCGACTTATGATTTACGTCTAAGACCATGTCTGGGACACCGACATCGTATTTGATTACAT
98550595 CTAAGACC-CTGTCTGGGATAGTGACACGA
66 CTAAGACCAC-GTCTGGGATAGTGACACGA
* * **
98550624 TGGCATCGTA-TT-TGATTT-CGTCTAAGACCCTGTCTGGGATAGTGACA-CGATATTTGATTAC
1 TGGCATCG-ACTTATGATTTACGTCTAAGACCATGTCTGGGACACCGACATCG-TATTTGATTAC
*
98550685 ATGTAAGACCACGTCTGGGA
64 ATCTAAGACCACGTCTGGGA
98550705 CGTTGGCATT
Statistics
Matches: 69, Mismatches: 9, Indels: 8
0.80 0.10 0.09
Matches are distributed among these distances:
91 2 0.03
92 49 0.71
93 7 0.10
94 10 0.14
95 1 0.01
ACGTcount: A:0.24, C:0.20, G:0.25, T:0.31
Consensus pattern (94 bp):
TGGCATCGACTTATGATTTACGTCTAAGACCATGTCTGGGACACCGACATCGTATTTGATTACAT
CTAAGACCACGTCTGGGATAGTGACACGA
Found at i:98552261 original size:40 final size:40
Alignment explanation
Indices: 98552170--98552339 Score: 207
Period size: 40 Copynumber: 4.3 Consensus size: 40
98552160 TCCTCGTTCA
* * * * *
98552170 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * *
98552209 CATGCCTTCGGGACGTAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
*
98552249 AATGCCTTCGGGACTTAACCCGGCTTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * * *
98552289 AATGCCCTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
*
98552329 AAGGCCTTCGG
1 AATGCCTTCGG
98552340 ATCTTAGTCC
Statistics
Matches: 112, Mismatches: 18, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
39 32 0.29
40 80 0.71
ACGTcount: A:0.25, C:0.30, G:0.22, T:0.24
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:98558258 original size:43 final size:43
Alignment explanation
Indices: 98558210--98558445 Score: 247
Period size: 43 Copynumber: 5.6 Consensus size: 43
98558200 TCTCAGACGT
* *
98558210 GGTCTTACATGTAATCACATATCGATGCC-ACTGTCCCAGATA
1 GGTCTTACACGTAATCACATATCGATGCCGACTGTCCCAGACA
* *
98558252 GAGTCTTACACG-AATCAAATA-CGATACCGA-TGTCCCAGACA
1 G-GTCTTACACGTAATCACATATCGATGCCGACTGTCCCAGACA
* ** * * * *
98558293 TGGTTTTGTACGTAATCACATATCGATGCCAAC-ATCCTAGACGT
1 -GGTCTTACACGTAATCACATATCGATGCCGACTGTCCCAGAC-A
*
98558337 GGTCTTACATGTAATCACATATCGATGCC-ACTGTCCCAGACAA
1 GGTCTTACACGTAATCACATATCGATGCCGACTGTCCCAGAC-A
*
98558380 GGTCTTACACG-AATCAAATA-CGATGCCGA-TGTCCCAGACA
1 GGTCTTACACGTAATCACATATCGATGCCGACTGTCCCAGACA
98558420 TGGTCTTACACGTAATCACATATCGA
1 -GGTCTTACACGTAATCACATATCGA
98558446 AATCATATAT
Statistics
Matches: 158, Mismatches: 24, Indels: 23
0.77 0.12 0.11
Matches are distributed among these distances:
40 1 0.01
41 51 0.32
42 38 0.24
43 68 0.43
ACGTcount: A:0.31, C:0.26, G:0.17, T:0.26
Consensus pattern (43 bp):
GGTCTTACACGTAATCACATATCGATGCCGACTGTCCCAGACA
Found at i:98558344 original size:84 final size:84
Alignment explanation
Indices: 98558210--98558445 Score: 241
Period size: 84 Copynumber: 2.8 Consensus size: 84
98558200 TCTCAGACGT
*
98558210 GGTCTTACATGTAATCACATATCGATGCCACTGTCCCAGA-TAGAGTCTTACACG-AATCAAATA
1 GGTCTTACACGTAATCACATATCGATGCCAC-GTCCCAGACT-G-GTCTTACACGTAATCAAATA
*
98558273 -CGATACCGA-TGTCCCAGACAT
63 TCGATACC-ACTGTCCCAGACAA
* ** * * * *
98558294 GGTTTTGTACGTAATCACATATCGATGCCAACATCCTAGACGTGGTCTTACATGTAATCACATAT
1 GGTCTTACACGTAATCACATATCGATGCC-ACGTCCCAGAC-TGGTCTTACACGTAATCAAATAT
*
98558359 CGATGCCACTGTCCCAGACAA
64 CGATACCACTGTCCCAGACAA
* * *
98558380 GGTCTTACACG-AATCAAATA-CGATGCCGATGTCCCAGACATGGTCTTACACGTAATCACATAT
1 GGTCTTACACGTAATCACATATCGATGCC-ACGTCCCAGAC-TGGTCTTACACGTAATCAAATAT
98558443 CGA
64 CGA
98558446 AATCATATAT
Statistics
Matches: 126, Mismatches: 20, Indels: 12
0.80 0.13 0.08
Matches are distributed among these distances:
84 80 0.63
85 20 0.16
86 26 0.21
ACGTcount: A:0.31, C:0.26, G:0.17, T:0.26
Consensus pattern (84 bp):
GGTCTTACACGTAATCACATATCGATGCCACGTCCCAGACTGGTCTTACACGTAATCAAATATCG
ATACCACTGTCCCAGACAA
Found at i:98558417 original size:127 final size:127
Alignment explanation
Indices: 98558191--98558445 Score: 433
Period size: 127 Copynumber: 2.0 Consensus size: 127
98558181 ATATCGTACA
*
98558191 ATGCCAACATCTCAGACGTGGTCTTACATGTAATCACATATCGATGCCACTGTCCCAGATAGAGT
1 ATGCCAACATCTCAGACGTGGTCTTACATGTAATCACATATCGATGCCACTGTCCCAGAAAGAGT
* **
98558256 CTTACACGAATCAAATACGATACCGATGTCCCAGACATGGTTTTGTACGTAATCACATATCG
66 CTTACACGAATCAAATACGATACCGATGTCCCAGACATGGTCTTACACGTAATCACATATCG
98558318 ATGCCAACATC-CTAGACGTGGTCTTACATGTAATCACATATCGATGCCACTGTCCCAGACAAG-
1 ATGCCAACATCTC-AGACGTGGTCTTACATGTAATCACATATCGATGCCACTGTCCCAGA-AAGA
*
98558381 GTCTTACACGAATCAAATACGATGCCGATGTCCCAGACATGGTCTTACACGTAATCACATATCG
64 GTCTTACACGAATCAAATACGATACCGATGTCCCAGACATGGTCTTACACGTAATCACATATCG
98558445 A
1 A
98558446 AATCATATAT
Statistics
Matches: 121, Mismatches: 5, Indels: 4
0.93 0.04 0.03
Matches are distributed among these distances:
126 1 0.01
127 118 0.98
128 2 0.02
ACGTcount: A:0.31, C:0.26, G:0.17, T:0.25
Consensus pattern (127 bp):
ATGCCAACATCTCAGACGTGGTCTTACATGTAATCACATATCGATGCCACTGTCCCAGAAAGAGT
CTTACACGAATCAAATACGATACCGATGTCCCAGACATGGTCTTACACGTAATCACATATCG
Found at i:98586720 original size:50 final size:50
Alignment explanation
Indices: 98586662--98586850 Score: 200
Period size: 50 Copynumber: 3.8 Consensus size: 50
98586652 ATTGGTATGT
** * *
98586662 ACATATGTGATGTTGGATTGGATTTTGAATATTCGGCCATAAAGGTATGC
1 ACATATGTGATGTTAAATTTGATTTTGAATATTCGGCCATAAAGGTAAGC
* * * * * *
98586712 ACAAATGTGATATTATATTTGAATTTGTATATTCGGCCATATAA-GTAAGT
1 ACATATGTGATGTTAAATTTGATTTTGAATATTCGGCCATA-AAGGTAAGC
* * *
98586762 ACATATGTGATGTTAAATTTGATCTTGCATATTCGGCCATATAGGTAAGC
1 ACATATGTGATGTTAAATTTGATTTTGAATATTCGGCCATAAAGGTAAGC
* * * * *
98586812 ACATATGTGATATTATATTTGATCTTGTATATTTGGCCA
1 ACATATGTGATGTTAAATTTGATTTTGAATATTCGGCCA
98586851 AATGAGTGAT
Statistics
Matches: 116, Mismatches: 21, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
49 1 0.01
50 113 0.97
51 2 0.02
ACGTcount: A:0.31, C:0.11, G:0.20, T:0.39
Consensus pattern (50 bp):
ACATATGTGATGTTAAATTTGATTTTGAATATTCGGCCATAAAGGTAAGC
Found at i:98586814 original size:100 final size:100
Alignment explanation
Indices: 98586635--98586850 Score: 290
Period size: 100 Copynumber: 2.2 Consensus size: 100
98586625 GCTAAATGAC
* ** * ** *
98586635 CTTGTATATTCGACCACATTGGTATGTACATATGTGATGTTGGATTGGATTTTGAATATTCGGCC
1 CTTGTATATTCGGCCACATAAGTAAGTACATATGTGATGTTAAATTGGATCTTGAATATTCGGCC
*
98586700 ATAAAGGTATGCACAAATGTGATATTATATTTGAAT
66 ATAAAGGTAAGCACAAATGTGATATTATATTTG-AT
* * *
98586736 -TTGTATATTCGGCCATATAAGTAAGTACATATGTGATGTTAAATTTGATCTTGCATATTCGGCC
1 CTTGTATATTCGGCCACATAAGTAAGTACATATGTGATGTTAAATTGGATCTTGAATATTCGGCC
* *
98586800 ATATAGGTAAGCACATATGTGATATTATATTTGAT
66 ATAAAGGTAAGCACAAATGTGATATTATATTTGAT
*
98586835 CTTGTATATTTGGCCA
1 CTTGTATATTCGGCCA
98586851 AATGAGTGAT
Statistics
Matches: 100, Mismatches: 14, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
99 2 0.02
100 98 0.98
ACGTcount: A:0.30, C:0.12, G:0.19, T:0.39
Consensus pattern (100 bp):
CTTGTATATTCGGCCACATAAGTAAGTACATATGTGATGTTAAATTGGATCTTGAATATTCGGCC
ATAAAGGTAAGCACAAATGTGATATTATATTTGAT
Found at i:98605500 original size:50 final size:50
Alignment explanation
Indices: 98605440--98605605 Score: 201
Period size: 50 Copynumber: 3.3 Consensus size: 50
98605430 GCTAAATGAC
* *
98605440 CTTGTATATTTGGCCATAAAGGTATGCACAAATGTGATATTATATTTGAAT
1 CTTGTATATTTGGCCATAAAGGTAAGCACATATGTGATATTATATTTG-AT
* * *
98605491 -TTGTATATTTGGCCATATAA-GTAAGTACATATGTGATGTTAAATTTGAT
1 CTTGTATATTTGGCCATA-AAGGTAAGCACATATGTGATATTATATTTGAT
* * * * * *
98605540 CTTGCATATTCGACCATATAGGTAAGCACATATGTAATATTCTATTTGAT
1 CTTGTATATTTGGCCATAAAGGTAAGCACATATGTGATATTATATTTGAT
98605590 CTTGTATATTTGGCCA
1 CTTGTATATTTGGCCA
98605606 AATGAGTGAT
Statistics
Matches: 95, Mismatches: 17, Indels: 7
0.80 0.14 0.06
Matches are distributed among these distances:
49 3 0.03
50 90 0.95
51 2 0.02
ACGTcount: A:0.31, C:0.11, G:0.17, T:0.40
Consensus pattern (50 bp):
CTTGTATATTTGGCCATAAAGGTAAGCACATATGTGATATTATATTTGAT
Found at i:98621606 original size:20 final size:21
Alignment explanation
Indices: 98621562--98621606 Score: 51
Period size: 20 Copynumber: 2.3 Consensus size: 21
98621552 AGTGAAAGGA
98621562 ACGAG-AAACGGGCCAAAAAT
1 ACGAGAAAACGGGCCAAAAAT
* *
98621582 A-GAGAAAATGGGCC-AAAGT
1 ACGAGAAAACGGGCCAAAAAT
98621601 ACGAGA
1 ACGAGA
98621607 TCAACACGGC
Statistics
Matches: 21, Mismatches: 2, Indels: 4
0.78 0.07 0.15
Matches are distributed among these distances:
19 8 0.38
20 13 0.62
ACGTcount: A:0.49, C:0.16, G:0.29, T:0.07
Consensus pattern (21 bp):
ACGAGAAAACGGGCCAAAAAT
Found at i:98629183 original size:37 final size:37
Alignment explanation
Indices: 98629127--98629204 Score: 138
Period size: 37 Copynumber: 2.1 Consensus size: 37
98629117 TCAATATATG
*
98629127 ATTACTTGTAGTTTCCTTCGATACATTATTGATGAGA
1 ATTACTTGTAGTTTACTTCGATACATTATTGATGAGA
*
98629164 ATTACTTGTGGTTTACTTCGATACATTATTGATGAGA
1 ATTACTTGTAGTTTACTTCGATACATTATTGATGAGA
98629201 ATTA
1 ATTA
98629205 TAAGTTGAGA
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 39 1.00
ACGTcount: A:0.28, C:0.12, G:0.17, T:0.44
Consensus pattern (37 bp):
ATTACTTGTAGTTTACTTCGATACATTATTGATGAGA
Found at i:98633886 original size:38 final size:38
Alignment explanation
Indices: 98633838--98633923 Score: 93
Period size: 39 Copynumber: 2.2 Consensus size: 38
98633828 CTCTGTCCAC
* * *
98633838 CCCTCCACACCACG-TGAGGATAAAATCAACCCACCCAG
1 CCCTACACACCAAGATGAGGAT-AAATCAACCCACCCAA
* * *
98633876 CCCTTCACACCAAGTATGGGGATAAATCAACCCATCCAA
1 CCCTACACACCAAG-ATGAGGATAAATCAACCCACCCAA
98633915 CCCTACACA
1 CCCTACACA
98633924 TCATAAGGTA
Statistics
Matches: 40, Mismatches: 6, Indels: 3
0.82 0.12 0.06
Matches are distributed among these distances:
38 12 0.30
39 22 0.55
40 6 0.15
ACGTcount: A:0.35, C:0.40, G:0.12, T:0.14
Consensus pattern (38 bp):
CCCTACACACCAAGATGAGGATAAATCAACCCACCCAA
Found at i:98638384 original size:27 final size:26
Alignment explanation
Indices: 98638331--98638435 Score: 104
Period size: 26 Copynumber: 4.0 Consensus size: 26
98638321 ATTAAGACCT
**
98638331 CAGTTTGGAAAATTATCAAAATACCCC
1 CAGTTTGG-AAATTATTGAAATACCCC
*
98638358 TAGTTTGGAAATTATTGAAATACCCC
1 CAGTTTGGAAATTATTGAAATACCCC
* *
98638384 CAATTTGAAAAATTATTGAAATACCCC
1 CAGTTTG-GAAATTATTGAAATACCCC
* **
98638411 C-GTTTTGTAAATTACCGAAATACCC
1 CAG-TTTGGAAATTATTGAAATACCC
98638436 TGGTAGTGTA
Statistics
Matches: 66, Mismatches: 10, Indels: 5
0.81 0.12 0.06
Matches are distributed among these distances:
26 36 0.55
27 30 0.45
ACGTcount: A:0.38, C:0.20, G:0.11, T:0.30
Consensus pattern (26 bp):
CAGTTTGGAAATTATTGAAATACCCC
Found at i:98638423 original size:53 final size:53
Alignment explanation
Indices: 98638334--98638435 Score: 125
Period size: 53 Copynumber: 1.9 Consensus size: 53
98638324 AAGACCTCAG
* **
98638334 TTTGGAAAATTATCAAAATACCCCTAGTTTGGAAATTATTGAAATACCCCCAA
1 TTTGAAAAATTATCAAAATACCCCTAGTTTGGAAATTACCGAAATACCCCCAA
** * *
98638387 TTTGAAAAATTATTGAAATACCCC-CGTTTTGTAAATTACCGAAATACCC
1 TTTGAAAAATTATCAAAATACCCCTAG-TTTGGAAATTACCGAAATACCC
98638436 TGGTAGTGTA
Statistics
Matches: 41, Mismatches: 7, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
52 1 0.02
53 40 0.98
ACGTcount: A:0.38, C:0.20, G:0.11, T:0.31
Consensus pattern (53 bp):
TTTGAAAAATTATCAAAATACCCCTAGTTTGGAAATTACCGAAATACCCCCAA
Found at i:98638764 original size:22 final size:22
Alignment explanation
Indices: 98638738--98638783 Score: 67
Period size: 22 Copynumber: 2.1 Consensus size: 22
98638728 TGTTGCAATA
98638738 TTTACGGCATTT-AGCCATTCTG
1 TTTACGGC-TTTGAGCCATTCTG
*
98638760 TTTACGGCTTTGAGTCATTCTG
1 TTTACGGCTTTGAGCCATTCTG
98638782 TT
1 TT
98638784 AACTTAGTGC
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
21 3 0.14
22 19 0.86
ACGTcount: A:0.15, C:0.20, G:0.20, T:0.46
Consensus pattern (22 bp):
TTTACGGCTTTGAGCCATTCTG
Found at i:98638875 original size:21 final size:21
Alignment explanation
Indices: 98638849--98638888 Score: 80
Period size: 21 Copynumber: 1.9 Consensus size: 21
98638839 TATCTCCACA
98638849 TGGTGTGTTGGTTGGTACGAG
1 TGGTGTGTTGGTTGGTACGAG
98638870 TGGTGTGTTGGTTGGTACG
1 TGGTGTGTTGGTTGGTACG
98638889 GGTTGGGAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.07, C:0.05, G:0.47, T:0.40
Consensus pattern (21 bp):
TGGTGTGTTGGTTGGTACGAG
Found at i:98649983 original size:14 final size:14
Alignment explanation
Indices: 98649964--98649996 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
98649954 AAAATTTTCA
*
98649964 TTTTTTT-ATTAGT
1 TTTTTTTCATTAAT
98649977 TTTTTTTCATTAAT
1 TTTTTTTCATTAAT
98649991 TTTTTT
1 TTTTTT
98649997 GTGTGTGTGT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 7 0.39
14 11 0.61
ACGTcount: A:0.15, C:0.03, G:0.03, T:0.79
Consensus pattern (14 bp):
TTTTTTTCATTAAT
Found at i:98656579 original size:5 final size:6
Alignment explanation
Indices: 98656535--98656577 Score: 63
Period size: 6 Copynumber: 7.3 Consensus size: 6
98656525 TATAAGGTCC
98656535 AAATTA AAATTA AAATTA AAATTGA AAATT- AAATT- AAATTA AA
1 AAATTA AAATTA AAATTA AAATT-A AAATTA AAATTA AAATTA AA
98656578 TTGTTTAGAA
Statistics
Matches: 35, Mismatches: 0, Indels: 4
0.90 0.00 0.10
Matches are distributed among these distances:
5 10 0.29
6 19 0.54
7 6 0.17
ACGTcount: A:0.65, C:0.00, G:0.02, T:0.33
Consensus pattern (6 bp):
AAATTA
Found at i:98662055 original size:47 final size:47
Alignment explanation
Indices: 98662002--98662269 Score: 448
Period size: 47 Copynumber: 5.7 Consensus size: 47
98661992 ACAAGATATG
98662002 TATATGTGACAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
1 TATATGTGACAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
* *
98662049 TATATGTGATAAGG-CTGAGTGGCCAATGTGATGAATGTGAAAGTGTA
1 TATATGTGACAAGGCCT-AATGGCCAATGTGATGAATGTGAAAGTGTA
* *
98662096 TATATGTGACGAGGCCTAATGGCCAGAATGTGATGAATGTGAAAGGGTA
1 TATATGTGACAAGGCCTAATGGCC--AATGTGATGAATGTGAAAGTGTA
98662145 TATATGTGACAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
1 TATATGTGACAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
* *
98662192 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
1 TATATGTGACAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
98662239 TATATGTGACAAGGCCTAATGGCCAATGTGA
1 TATATGTGACAAGGCCTAATGGCCAATGTGA
98662270 CAGCCCTAAA
Statistics
Matches: 205, Mismatches: 12, Indels: 8
0.91 0.05 0.04
Matches are distributed among these distances:
46 2 0.01
47 156 0.76
48 2 0.01
49 45 0.22
ACGTcount: A:0.33, C:0.10, G:0.29, T:0.27
Consensus pattern (47 bp):
TATATGTGACAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
Found at i:98662146 original size:96 final size:94
Alignment explanation
Indices: 98662002--98662269 Score: 448
Period size: 96 Copynumber: 2.8 Consensus size: 94
98661992 ACAAGATATG
*
98662002 TATATGTGACAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGG-CTG
1 TATATGTGACAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGACAAGGCCT-
*
98662066 AGTGGCCAATGTGATGAATGTGAAAGTGTA
65 AATGGCCAATGTGATGAATGTGAAAGTGTA
* *
98662096 TATATGTGACGAGGCCTAATGGCCAGAATGTGATGAATGTGAAAGGGTATATATGTGACAAGGCC
1 TATATGTGACAAGGCCTAATGGCC--AATGTGATGAATGTGAAAGTGTATATATGTGACAAGGCC
98662161 TAATGGCCAATGTGATGAATGTGAAAGTGTA
64 TAATGGCCAATGTGATGAATGTGAAAGTGTA
* *
98662192 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGACAAGGCCTA
1 TATATGTGACAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGACAAGGCCTA
98662257 ATGGCCAATGTGA
66 ATGGCCAATGTGA
98662270 CAGCCCTAAA
Statistics
Matches: 163, Mismatches: 8, Indels: 6
0.92 0.05 0.03
Matches are distributed among these distances:
94 76 0.47
96 85 0.52
97 2 0.01
ACGTcount: A:0.33, C:0.10, G:0.29, T:0.27
Consensus pattern (94 bp):
TATATGTGACAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGACAAGGCCTA
ATGGCCAATGTGATGAATGTGAAAGTGTA
Found at i:98662260 original size:143 final size:143
Alignment explanation
Indices: 98662002--98662263 Score: 497
Period size: 143 Copynumber: 1.8 Consensus size: 143
98661992 ACAAGATATG
*
98662002 TATATGTGACAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCTGA
1 TATATGTGACAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGA
* *
98662067 GTGGCCAATGTGATGAATGTGAAAGTGTATATATGTGACGAGGCCTAATGGCCAGAATGTGATGA
66 ATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGACAAGGCCTAATGGCCAGAATGTGATGA
98662132 ATGTGAAAGGGTA
131 ATGTGAAAGGGTA
98662145 TATATGTGACAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGA
1 TATATGTGACAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGA
98662210 ATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGACAAGGCCTAATGGCCA
66 ATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGACAAGGCCTAATGGCCA
98662264 ATGTGACAGC
Statistics
Matches: 116, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
143 116 1.00
ACGTcount: A:0.33, C:0.10, G:0.29, T:0.27
Consensus pattern (143 bp):
TATATGTGACAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGA
ATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGACAAGGCCTAATGGCCAGAATGTGATGA
ATGTGAAAGGGTA
Found at i:98664163 original size:40 final size:39
Alignment explanation
Indices: 98664081--98664263 Score: 167
Period size: 40 Copynumber: 4.6 Consensus size: 39
98664071 GAATGATGTT
* * *
98664081 CGGGCTAAGTCCCGAAGGC-TTTGTGCTA-AGTGACCATATC
1 CGGGCTAAGT-CCGAAGGCATTTGTGCGAGA-T-ACTAAATC
* *
98664121 CGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAATTC
1 CGGGCTAAG-TCCGAAGGCATTTGTGCGAGATACTAAATC
* *
98664161 CGGGCTAAGCCCGAAGGCATTGGTGCGA-ATTACTAAATC
1 CGGGCTAAGTCCGAAGGCATTTGTGCGAGA-TACTAAATC
* * *
98664200 CGGGTTAAGTCCCAAAGGCATTTGTGCGAGTTACTATAA-C
1 CGGGCTAAGT-CCGAAGGCATTTGTGCGAGATACTA-AATC
*
98664240 CGGGCTATGTCCTGAAGGCATTTG
1 CGGGCTAAGTCC-GAAGGCATTTG
98664264 AACGAGTAGC
Statistics
Matches: 118, Mismatches: 17, Indels: 16
0.78 0.11 0.11
Matches are distributed among these distances:
38 1 0.01
39 35 0.30
40 69 0.58
41 12 0.10
42 1 0.01
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (39 bp):
CGGGCTAAGTCCGAAGGCATTTGTGCGAGATACTAAATC
Found at i:98665716 original size:47 final size:47
Alignment explanation
Indices: 98665647--98665815 Score: 275
Period size: 47 Copynumber: 3.6 Consensus size: 47
98665637 GGGTGTTACA
98665647 GCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATG
1 GCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATG
* * *
98665694 GCCAATGTGATGAATGTGAAAGTGTATATATGAGATAAGACCTAATG
1 GCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATG
* * *
98665741 GCCGATGTGATGGATGTGAAGGTGTATATATGTGATAAGGCCGAATG
1 GCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATG
*
98665788 GCCAATGTGATGGATGTGAAAGTGTATA
1 GCCAATGTGATGAATGTGAAAGTGTATA
98665816 AATACGATAA
Statistics
Matches: 111, Mismatches: 11, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
47 111 1.00
ACGTcount: A:0.33, C:0.08, G:0.31, T:0.28
Consensus pattern (47 bp):
GCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATG
Found at i:98667822 original size:38 final size:38
Alignment explanation
Indices: 98667777--98667889 Score: 163
Period size: 38 Copynumber: 3.0 Consensus size: 38
98667767 AATCCGGGCT
** *
98667777 TAAAGACCCGATGACTATAAGTAGAGATTGTGTCCGGG
1 TAAAGACCCGATGACTATGTGTAGAGATTATGTCCGGG
*
98667815 TAAAGACCCGATGACTATGTGTAGAGATTATGCCCGGG
1 TAAAGACCCGATGACTATGTGTAGAGATTATGTCCGGG
* * *
98667853 TAAAGATCCGATGGCTATGTGCAGAGATTATGTCCGG
1 TAAAGACCCGATGACTATGTGTAGAGATTATGTCCGG
98667890 ATTAAAATTC
Statistics
Matches: 67, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
38 67 1.00
ACGTcount: A:0.29, C:0.17, G:0.29, T:0.25
Consensus pattern (38 bp):
TAAAGACCCGATGACTATGTGTAGAGATTATGTCCGGG
Found at i:98668002 original size:40 final size:40
Alignment explanation
Indices: 98667947--98668137 Score: 310
Period size: 40 Copynumber: 4.8 Consensus size: 40
98667937 CTCGACGATG
*
98667947 ATCCGGGTTAAGTCCCGAAGAGCATTCGTGCTGGTGTTAC
1 ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTAC
* *
98667987 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGTTAC
1 ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTAC
*
98668027 ATCCGAGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTAC
1 ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTAC
*
98668067 ATCAGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTAC
1 ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTAC
* * *
98668107 ATCCGGGCTAAGTCCTGAAGGGCTTTCGTGC
1 ATCCGGGCTAAGTCCCGAAGAGCATTCGTGC
98668138 CGATGATGTG
Statistics
Matches: 139, Mismatches: 12, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
40 139 1.00
ACGTcount: A:0.21, C:0.24, G:0.29, T:0.26
Consensus pattern (40 bp):
ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTAC
Found at i:98668335 original size:25 final size:25
Alignment explanation
Indices: 98668306--98668383 Score: 122
Period size: 25 Copynumber: 3.1 Consensus size: 25
98668296 TGTGTAATAA
98668306 CGAATGAATATAGGCACTGTGTGTG
1 CGAATGAATATAGGCACTGTGTGTG
*
98668331 CGAATGAATATAGGCACTATGTGTG
1 CGAATGAATATAGGCACTGTGTGTG
*
98668356 CGAATGAAT-TGAGACACTGTGTGTG
1 CGAATGAATAT-AGGCACTGTGTGTG
98668381 CGA
1 CGA
98668384 GATCGGTCAA
Statistics
Matches: 49, Mismatches: 3, Indels: 2
0.91 0.06 0.04
Matches are distributed among these distances:
24 1 0.02
25 48 0.98
ACGTcount: A:0.29, C:0.13, G:0.31, T:0.27
Consensus pattern (25 bp):
CGAATGAATATAGGCACTGTGTGTG
Found at i:98668404 original size:28 final size:28
Alignment explanation
Indices: 98668368--98668466 Score: 103
Period size: 28 Copynumber: 3.5 Consensus size: 28
98668358 AATGAATTGA
98668368 GACACTGTGTGTGCGAGATCGGTCAATG
1 GACACTGTGTGTGCGAGATCGGTCAATG
* * **
98668396 GACACTGTGTGTGCGA-ATTC-TTTAACC
1 GACACTGTGTGTGCGAGA-TCGGTCAATG
* *
98668423 GAGCACTATGTGTGCGAGATCGGTCAGTG
1 GA-CACTGTGTGTGCGAGATCGGTCAATG
*
98668452 GGCACTGTGTGTGCG
1 GACACTGTGTGTGCG
98668467 GATTTCATTT
Statistics
Matches: 55, Mismatches: 12, Indels: 8
0.73 0.16 0.11
Matches are distributed among these distances:
27 6 0.11
28 45 0.82
29 4 0.07
ACGTcount: A:0.19, C:0.19, G:0.34, T:0.27
Consensus pattern (28 bp):
GACACTGTGTGTGCGAGATCGGTCAATG
Found at i:98670546 original size:200 final size:200
Alignment explanation
Indices: 98670203--98670602 Score: 764
Period size: 200 Copynumber: 2.0 Consensus size: 200
98670193 CATATGTTTC
* *
98670203 GGCTATAGGTGTGTTTGAAAAGTAGGTTCTTAAGTATTTGAGTTTGATTCCTTTGTCAGTTTTAA
1 GGCTATAGGTGTGTTTGAAAAGTAGGTTCTTAAGTATTTGAGTTTGATTCCTTAGTAAGTTTTAA
98670268 GTACTTAAATGGAAGGAATATGAATTATGTATATGTATGCCTTATGTATGTACCATGTACACATA
66 GTACTTAAATGGAAGGAATATGAATTATGTATATGTATGCCTTATGTATGTACCATGTACACATA
98670333 AGGACATTTGGCAATATGATTAAATTCTTGTATAAGAAAGAATGATAAATTAAGTGACTCTTTGC
131 AGGACATTTGGCAATATGATTAAATTCTTGTATAAGAAAGAATGATAAATTAAGTGACTCTTTGC
98670398 TTGTG
196 TTGTG
*
98670403 GGCTATAGGTGTGTTTGAAAGGTAGGTTCTTAAGTATTTGAGTTTGATTCCTTAGTAAGTTTTAA
1 GGCTATAGGTGTGTTTGAAAAGTAGGTTCTTAAGTATTTGAGTTTGATTCCTTAGTAAGTTTTAA
*
98670468 GTACTTAAATGGAATGAATATGAATTATGTATATGTATGCCTTATGTATGTACCATGTACACATA
66 GTACTTAAATGGAAGGAATATGAATTATGTATATGTATGCCTTATGTATGTACCATGTACACATA
98670533 AGGACATTTGGCAATATGATTAAATTCTTGTATAAGAAAGAATGATAAATTAAGTGACTCTTTGC
131 AGGACATTTGGCAATATGATTAAATTCTTGTATAAGAAAGAATGATAAATTAAGTGACTCTTTGC
98670598 TTGTG
196 TTGTG
98670603 AATGTGAATT
Statistics
Matches: 196, Mismatches: 4, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
200 196 1.00
ACGTcount: A:0.32, C:0.09, G:0.21, T:0.39
Consensus pattern (200 bp):
GGCTATAGGTGTGTTTGAAAAGTAGGTTCTTAAGTATTTGAGTTTGATTCCTTAGTAAGTTTTAA
GTACTTAAATGGAAGGAATATGAATTATGTATATGTATGCCTTATGTATGTACCATGTACACATA
AGGACATTTGGCAATATGATTAAATTCTTGTATAAGAAAGAATGATAAATTAAGTGACTCTTTGC
TTGTG
Found at i:98671783 original size:47 final size:47
Alignment explanation
Indices: 98671730--98672068 Score: 561
Period size: 47 Copynumber: 7.2 Consensus size: 47
98671720 ACAAGATATG
*
98671730 TATATGTGATATGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
98671777 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
98671824 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
* * *
98671871 TATATGTGACAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
98671918 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
* * * * * *
98671965 TATATGAGATAAGACCTAATGGCCGATGTGATGGATGTGAAGGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
* *
98672012 TATATGTGATAAGGCCGAATGGCCAATCTGATGGATGTGAAAGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
*
98672059 TAAATGTGAT
1 TATATGTGAT
98672069 TAGTCTCGAA
Statistics
Matches: 272, Mismatches: 20, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
47 272 1.00
ACGTcount: A:0.33, C:0.09, G:0.30, T:0.28
Consensus pattern (47 bp):
TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
Found at i:98671808 original size:22 final size:22
Alignment explanation
Indices: 98671780--98671855 Score: 64
Period size: 22 Copynumber: 3.3 Consensus size: 22
98671770 AAGTGTATAT
98671780 ATGTGATAAGGCCGAATGGCCA
1 ATGTGATAAGGCCGAATGGCCA
* * ***
98671802 ATGTGATGAATG-TGAAAGTGTATA
1 ATGTGAT-AAGGCCG-AA-TGGCCA
98671826 TATGTGATAAGGCCGAATGGCCA
1 -ATGTGATAAGGCCGAATGGCCA
98671849 ATGTGAT
1 ATGTGAT
98671856 GAATGTGAAA
Statistics
Matches: 39, Mismatches: 10, Indels: 10
0.66 0.17 0.17
Matches are distributed among these distances:
22 15 0.38
23 8 0.21
24 8 0.21
25 8 0.21
ACGTcount: A:0.33, C:0.11, G:0.30, T:0.26
Consensus pattern (22 bp):
ATGTGATAAGGCCGAATGGCCA
Found at i:98674069 original size:38 final size:38
Alignment explanation
Indices: 98674024--98674131 Score: 126
Period size: 38 Copynumber: 2.8 Consensus size: 38
98674014 AATCCGGGCT
* * *
98674024 TAAAGACCTGATGACTATAAGTAGAGATTGTGTCCGGG
1 TAAAGACCCGATGACTATAAGTAGAGATTATGCCCGGG
* *
98674062 TAAAGACCCGATGACTATATGTGGAGATTATGCCCGGG
1 TAAAGACCCGATGACTATAAGTAGAGATTATGCCCGGG
* * ** *
98674100 TAAAGATCCGATGGCTATGTGCAGAGATTATG
1 TAAAGACCCGATGACTATAAGTAGAGATTATG
98674132 TCCGAATTAA
Statistics
Matches: 60, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
38 60 1.00
ACGTcount: A:0.31, C:0.15, G:0.29, T:0.26
Consensus pattern (38 bp):
TAAAGACCCGATGACTATAAGTAGAGATTATGCCCGGG
Found at i:98674253 original size:40 final size:40
Alignment explanation
Indices: 98674194--98674523 Score: 561
Period size: 40 Copynumber: 8.2 Consensus size: 40
98674184 CTCGACGATG
*
98674194 ATCCGGGTTAAGTCCCGAAGAGCATTCGTGCTGGTGTTAC
1 ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTAC
* *
98674234 ATCCGGGCTAAGTCTCGAAGAGCATTCGTGCTGGTCTTAC
1 ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTAC
*
98674274 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTGGTGTTAC
1 ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTAC
*
98674314 ATCCGGGCTAAGTCTCGAAGAGCATTCGTGCTGGTGTTAC
1 ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTAC
*
98674354 ATTCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTAC
1 ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTAC
* *
98674394 ATCCGGGCTAAGTCCTGAAGGGCATTCGTGCTGGTGTTAC
1 ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTAC
*
98674434 ATTCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTAC
1 ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTAC
*
98674474 ATCCGGGCTAAGTCTCGAAGAGCATTCGTGCTGGTGTTAC
1 ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTAC
*
98674514 ATTCGGGCTA
1 ATCCGGGCTA
98674524 CAAAGTTTAA
Statistics
Matches: 271, Mismatches: 19, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
40 271 1.00
ACGTcount: A:0.20, C:0.23, G:0.30, T:0.27
Consensus pattern (40 bp):
ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTAC
Found at i:98674735 original size:28 final size:28
Alignment explanation
Indices: 98674704--98674856 Score: 116
Period size: 28 Copynumber: 5.5 Consensus size: 28
98674694 TTTAACCGAG
98674704 CACTATGTGTGCGAGATCGGTCAGTGGA
1 CACTATGTGTGCGAGATCGGTCAGTGGA
* * * ***
98674732 CACTTTGTGTGCGA-ATTC-TTTAACCGA
1 CACTATGTGTGCGAGA-TCGGTCAGTGGA
98674759 GCACTATGTGTGCGAGATCGGTCAGTGGA
1 -CACTATGTGTGCGAGATCGGTCAGTGGA
* * * ***
98674788 CACTGTGTGTGCGA-ATTC-TTTAACCGA
1 CACTATGTGTGCGAGA-TCGGTCAGTGGA
*
98674815 GCACTATGTGTGCGAGATCGGTCAGTGGG
1 -CACTATGTGTGCGAGATCGGTCAGTGGA
*
98674844 CACTGTGTGTGCG
1 CACTATGTGTGCG
98674857 GATTTCATTT
Statistics
Matches: 91, Mismatches: 26, Indels: 16
0.68 0.20 0.12
Matches are distributed among these distances:
27 10 0.11
28 72 0.79
29 9 0.10
ACGTcount: A:0.20, C:0.20, G:0.32, T:0.29
Consensus pattern (28 bp):
CACTATGTGTGCGAGATCGGTCAGTGGA
Found at i:98674751 original size:56 final size:56
Alignment explanation
Indices: 98674678--98674856 Score: 340
Period size: 56 Copynumber: 3.2 Consensus size: 56
98674668 AATTGAGACG
98674678 CTGTGTGTGCGAATTCTTTAACCGAGCACTATGTGTGCGAGATCGGTCAGTGGACA
1 CTGTGTGTGCGAATTCTTTAACCGAGCACTATGTGTGCGAGATCGGTCAGTGGACA
*
98674734 CTTTGTGTGCGAATTCTTTAACCGAGCACTATGTGTGCGAGATCGGTCAGTGGACA
1 CTGTGTGTGCGAATTCTTTAACCGAGCACTATGTGTGCGAGATCGGTCAGTGGACA
*
98674790 CTGTGTGTGCGAATTCTTTAACCGAGCACTATGTGTGCGAGATCGGTCAGTGGGCA
1 CTGTGTGTGCGAATTCTTTAACCGAGCACTATGTGTGCGAGATCGGTCAGTGGACA
98674846 CTGTGTGTGCG
1 CTGTGTGTGCG
98674857 GATTTCATTT
Statistics
Matches: 120, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
56 120 1.00
ACGTcount: A:0.20, C:0.20, G:0.31, T:0.30
Consensus pattern (56 bp):
CTGTGTGTGCGAATTCTTTAACCGAGCACTATGTGTGCGAGATCGGTCAGTGGACA
Found at i:98678992 original size:7 final size:7
Alignment explanation
Indices: 98678984--98679025 Score: 75
Period size: 7 Copynumber: 6.0 Consensus size: 7
98678974 ACCATGAACT
*
98678984 CTAAACT
1 CTAAACC
98678991 CTAAACC
1 CTAAACC
98678998 CTAAACC
1 CTAAACC
98679005 CTAAACC
1 CTAAACC
98679012 CTAAACC
1 CTAAACC
98679019 CTAAACC
1 CTAAACC
98679026 ACAAACACAA
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
7 34 1.00
ACGTcount: A:0.43, C:0.40, G:0.00, T:0.17
Consensus pattern (7 bp):
CTAAACC
Found at i:98679008 original size:21 final size:21
Alignment explanation
Indices: 98678958--98679025 Score: 75
Period size: 21 Copynumber: 3.2 Consensus size: 21
98678948 NNNNNNNNTG
* *
98678958 AAACCCTAAACT-TGAGACCAT
1 AAACCCTAAACTCT-AAACCCT
* *
98678979 GAACTCTAAACTCTAAACCCT
1 AAACCCTAAACTCTAAACCCT
*
98679000 AAACCCTAAACCCTAAACCCT
1 AAACCCTAAACTCTAAACCCT
98679021 AAACC
1 AAACC
98679026 ACAAACACAA
Statistics
Matches: 39, Mismatches: 7, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
21 38 0.97
22 1 0.03
ACGTcount: A:0.43, C:0.35, G:0.04, T:0.18
Consensus pattern (21 bp):
AAACCCTAAACTCTAAACCCT
Found at i:98679038 original size:21 final size:21
Alignment explanation
Indices: 98678984--98679038 Score: 58
Period size: 21 Copynumber: 2.6 Consensus size: 21
98678974 ACCATGAACT
* *
98678984 CTAAACTCTAAACCCTAAACC
1 CTAAACACAAAACCCTAAACC
* *
98679005 CTAAACCCTAAACCCTAAACC
1 CTAAACACAAAACCCTAAACC
98679026 AC-AAACACAAAAC
1 -CTAAACACAAAAC
98679039 ATATAACCCC
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
21 29 0.97
22 1 0.03
ACGTcount: A:0.49, C:0.38, G:0.00, T:0.13
Consensus pattern (21 bp):
CTAAACACAAAACCCTAAACC
Found at i:98679660 original size:19 final size:19
Alignment explanation
Indices: 98679619--98679670 Score: 52
Period size: 18 Copynumber: 2.6 Consensus size: 19
98679609 CATTATATCG
*
98679619 TAAACCCTAAAACTCTAAAT
1 TAAA-CCTAAAATTCTAAAT
*
98679639 T-AACCTAAAATTCATAACT
1 TAAACCTAAAATTC-TAAAT
98679658 TAAACCTTAAAAT
1 TAAACC-TAAAAT
98679671 AACATAATTT
Statistics
Matches: 27, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
18 9 0.33
19 7 0.26
20 5 0.19
21 6 0.22
ACGTcount: A:0.50, C:0.21, G:0.00, T:0.29
Consensus pattern (19 bp):
TAAACCTAAAATTCTAAAT
Found at i:98680691 original size:54 final size:54
Alignment explanation
Indices: 98680581--98680692 Score: 125
Period size: 54 Copynumber: 2.1 Consensus size: 54
98680571 CACACCGGCA
* * ** * **
98680581 TGTGACCAAAGTTAAAGAGTTACACAGGCACGGACACTGGCTGGGACATGGTCG
1 TGTGACCAAAGTCAAAGAGTTACACAGGCACAGACACCAGCTGGGACACGACCG
* * * *
98680635 TGTGACCCAAGTCAAAGAGTTACACGGGCATAGACACCAGTTGGGACACGACCG
1 TGTGACCAAAGTCAAAGAGTTACACAGGCACAGACACCAGCTGGGACACGACCG
98680689 TGTG
1 TGTG
98680693 TCCCTATTTC
Statistics
Matches: 47, Mismatches: 11, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
54 47 1.00
ACGTcount: A:0.29, C:0.22, G:0.30, T:0.18
Consensus pattern (54 bp):
TGTGACCAAAGTCAAAGAGTTACACAGGCACAGACACCAGCTGGGACACGACCG
Found at i:98687156 original size:25 final size:24
Alignment explanation
Indices: 98687128--98687208 Score: 87
Period size: 24 Copynumber: 3.4 Consensus size: 24
98687118 TTGGAGGCCT
98687128 AGCCTCTTTTAATAACTGAGGCAAG
1 AGCC-CTTTTAATAACTGAGGCAAG
*
98687153 AGCCCTTTTAATAACTGGGGCATA-
1 AGCCCTTTTAATAACTGAGGCA-AG
* *
98687177 AGCCC-GTTAATAACTGGGGCATA-
1 AGCCCTTTTAATAACTGAGGCA-AG
98687200 AGCCCTTTT
1 AGCCCTTTT
98687209 GCACTTCCTC
Statistics
Matches: 51, Mismatches: 3, Indels: 5
0.86 0.05 0.08
Matches are distributed among these distances:
23 22 0.43
24 24 0.47
25 5 0.10
ACGTcount: A:0.28, C:0.22, G:0.21, T:0.28
Consensus pattern (24 bp):
AGCCCTTTTAATAACTGAGGCAAG
Found at i:98687190 original size:23 final size:24
Alignment explanation
Indices: 98687136--98687205 Score: 99
Period size: 23 Copynumber: 3.0 Consensus size: 24
98687126 CTAGCCTCTT
* *
98687136 TTAATAACTGAGGCA-AGAGCCCTT
1 TTAATAACTGGGGCATA-AGCCCTG
98687160 TTAATAACTGGGGCATAAGCCC-G
1 TTAATAACTGGGGCATAAGCCCTG
98687183 TTAATAACTGGGGCATAAGCCCT
1 TTAATAACTGGGGCATAAGCCCT
98687206 TTTGCACTTC
Statistics
Matches: 42, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
23 22 0.52
24 19 0.45
25 1 0.02
ACGTcount: A:0.31, C:0.21, G:0.23, T:0.24
Consensus pattern (24 bp):
TTAATAACTGGGGCATAAGCCCTG
Found at i:98691653 original size:27 final size:27
Alignment explanation
Indices: 98691525--98691652 Score: 177
Period size: 27 Copynumber: 4.7 Consensus size: 27
98691515 GATTTAGGCT
* *
98691525 AAAATTACCGTTTTACCCTCGATTTAT
1 AAAATTACCATTTTACCCTCGATTTAC
* *
98691552 AGAATTACCATTTTACCCTCGATTTAT
1 AAAATTACCATTTTACCCTCGATTTAC
*
98691579 AGAATTACCATTTTACCCTCGATTTAC
1 AAAATTACCATTTTACCCTCGATTTAC
98691606 AAAATTACCATTTTACCCTC-AGTTTAC
1 AAAATTACCATTTTACCCTCGA-TTTAC
* *
98691633 AAAATTATCGTTTTACCCTC
1 AAAATTACCATTTTACCCTC
98691653 AATTGTGAAA
Statistics
Matches: 94, Mismatches: 6, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
26 1 0.01
27 93 0.99
ACGTcount: A:0.30, C:0.24, G:0.06, T:0.39
Consensus pattern (27 bp):
AAAATTACCATTTTACCCTCGATTTAC
Found at i:98691826 original size:54 final size:53
Alignment explanation
Indices: 98691688--98691839 Score: 187
Period size: 54 Copynumber: 2.8 Consensus size: 53
98691678 TGTAGGATAG
* * *
98691688 AATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATATCCCTAGTTTGTAA
1 AATTACCAAAATACCCCTAGTTTGTAAAATTATCGAAATA-CCCTAATTTGTAA
* * * *
98691742 AATTACCGAAATACCACTGGTTTGTGAAATTATCGAAATACCCTCAATTTGTAA
1 AATTACCAAAATACCCCTAGTTTGTAAAATTATCGAAATACCCT-AATTTGTAA
* ** *
98691796 AATTACCAAAATACCCCTAATTTACAAAATTATAGAAATACCCT
1 AATTACCAAAATACCCCTAGTTTGTAAAATTATCGAAATACCCT
98691840 TGACTTTCTA
Statistics
Matches: 82, Mismatches: 15, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
53 4 0.05
54 78 0.95
ACGTcount: A:0.41, C:0.20, G:0.08, T:0.30
Consensus pattern (53 bp):
AATTACCAAAATACCCCTAGTTTGTAAAATTATCGAAATACCCTAATTTGTAA
Found at i:98691827 original size:27 final size:27
Alignment explanation
Indices: 98691688--98691814 Score: 166
Period size: 27 Copynumber: 4.7 Consensus size: 27
98691678 TGTAGGATAG
98691688 AATTACCAAAATACCCCTAGTTTGTAA
1 AATTACCAAAATACCCCTAGTTTGTAA
*
98691715 AATTACCAAAATATCCCTAGTTTGTAA
1 AATTACCAAAATACCCCTAGTTTGTAA
* * * *
98691742 AATTACCGAAATACCACTGGTTTGTGA
1 AATTACCAAAATACCCCTAGTTTGTAA
* * *
98691769 AATTATCGAAATA-CCCTCAATTTGTAA
1 AATTACCAAAATACCCCT-AGTTTGTAA
98691796 AATTACCAAAATACCCCTA
1 AATTACCAAAATACCCCTA
98691815 ATTTACAAAA
Statistics
Matches: 85, Mismatches: 13, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
26 3 0.04
27 78 0.92
28 4 0.05
ACGTcount: A:0.40, C:0.21, G:0.09, T:0.30
Consensus pattern (27 bp):
AATTACCAAAATACCCCTAGTTTGTAA
Found at i:98691834 original size:27 final size:28
Alignment explanation
Indices: 98691768--98691866 Score: 80
Period size: 27 Copynumber: 3.6 Consensus size: 28
98691758 CTGGTTTGTG
* **
98691768 AAATTATCGAAATA-CCCTCAATTTGTA
1 AAATTATAGAAATACCCCTCAATTTACA
*
98691795 AAATTACCA-AAATACCCCT-AATTTACA
1 AAATTA-TAGAAATACCCCTCAATTTACA
* * *
98691822 AAATTATAGAAATACCCTTGACTTT-CTA
1 AAATTATAGAAATACCCCTCAATTTAC-A
98691850 GAAATTATAGAAATACC
1 -AAATTATAGAAATACC
98691867 ATTGGTTTAC
Statistics
Matches: 59, Mismatches: 7, Indels: 10
0.78 0.09 0.13
Matches are distributed among these distances:
26 1 0.02
27 33 0.56
28 9 0.15
29 16 0.27
ACGTcount: A:0.44, C:0.19, G:0.06, T:0.30
Consensus pattern (28 bp):
AAATTATAGAAATACCCCTCAATTTACA
Found at i:98691889 original size:27 final size:27
Alignment explanation
Indices: 98691816--98691901 Score: 104
Period size: 27 Copynumber: 3.1 Consensus size: 27
98691806 ATACCCCTAA
*
98691816 TTTACAAAATTATAGAAATACCCTTGAC
1 TTTACAAAATTATAGAAATACCCTTG-G
*
98691844 TTT-CTAGAAATTATAGAAATACCATTGG
1 TTTAC-A-AAATTATAGAAATACCCTTGG
98691872 TTTACAAAATTACT-GAAATACCCTTGG
1 TTTACAAAATTA-TAGAAATACCCTTGG
98691899 TTT
1 TTT
98691902 GTAGATTTAC
Statistics
Matches: 51, Mismatches: 3, Indels: 9
0.81 0.05 0.14
Matches are distributed among these distances:
27 22 0.43
28 9 0.18
29 20 0.39
ACGTcount: A:0.38, C:0.15, G:0.10, T:0.36
Consensus pattern (27 bp):
TTTACAAAATTATAGAAATACCCTTGG
Found at i:98692910 original size:24 final size:24
Alignment explanation
Indices: 98692827--98692910 Score: 98
Period size: 25 Copynumber: 3.4 Consensus size: 24
98692817 GAGGAAGTGC
* *
98692827 TAAAAGGGCTCTGCCCCAGTTTACC
1 TAAAAGGGCTTTGCCCCAGTTTA-T
* *
98692852 GAAAAGGGCTTTACCCCAGTTTAT
1 TAAAAGGGCTTTGCCCCAGTTTAT
98692876 TAGAAAGGGCTTTGCCCCAG-TTAT
1 TA-AAAGGGCTTTGCCCCAGTTTAT
98692900 TAAAAGAGGCT
1 TAAAAG-GGCT
98692911 AGGCCTCCAG
Statistics
Matches: 51, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
23 4 0.08
24 11 0.22
25 36 0.71
ACGTcount: A:0.29, C:0.23, G:0.23, T:0.26
Consensus pattern (24 bp):
TAAAAGGGCTTTGCCCCAGTTTAT
Found at i:98692920 original size:25 final size:24
Alignment explanation
Indices: 98692865--98692924 Score: 68
Period size: 25 Copynumber: 2.4 Consensus size: 24
98692855 AAGGGCTTTA
**
98692865 CCCCAGTTTATTAGAAAGGGCTTTG
1 CCCCAG-TTATTAGAAAGGGCTAGG
98692890 CCCCAGTTATTA-AAAGAGGCTAGG
1 CCCCAGTTATTAGAAAG-GGCTAGG
98692914 CCTCCAGTTAT
1 CC-CCAGTTAT
98692925 ACATTCATTG
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
23 4 0.13
24 13 0.42
25 14 0.45
ACGTcount: A:0.27, C:0.23, G:0.22, T:0.28
Consensus pattern (24 bp):
CCCCAGTTATTAGAAAGGGCTAGG
Found at i:98692982 original size:42 final size:42
Alignment explanation
Indices: 98692923--98693085 Score: 292
Period size: 42 Copynumber: 3.9 Consensus size: 42
98692913 GCCTCCAGTT
*
98692923 ATACATTCATTGACATTACATGTGATATTGAAATGGGCTTGC
1 ATACATCCATTGACATTACATGTGATATTGAAATGGGCTTGC
*
98692965 ATACATTCATTGACATTACATGTGATATTGAAATGGGCTTGC
1 ATACATCCATTGACATTACATGTGATATTGAAATGGGCTTGC
*
98693007 ATACATCCATTGACATTACATGTAATATTGAAATGGGCTTGC
1 ATACATCCATTGACATTACATGTGATATTGAAATGGGCTTGC
98693049 ATACATCCATTGACATTACATGTGATATTG-AATGGGC
1 ATACATCCATTGACATTACATGTGATATTGAAATGGGC
98693086 CTAAGGGCCA
Statistics
Matches: 118, Mismatches: 3, Indels: 1
0.97 0.02 0.01
Matches are distributed among these distances:
41 7 0.06
42 111 0.94
ACGTcount: A:0.32, C:0.15, G:0.18, T:0.34
Consensus pattern (42 bp):
ATACATCCATTGACATTACATGTGATATTGAAATGGGCTTGC
Found at i:98693019 original size:24 final size:24
Alignment explanation
Indices: 98692991--98693061 Score: 64
Period size: 24 Copynumber: 3.2 Consensus size: 24
98692981 TACATGTGAT
98692991 ATTGAAATGGGCTTGCATACATCC
1 ATTGAAATGGGCTTGCATACATCC
* ** *
98693015 ATTGACAT-TACATG--TA-AT--
1 ATTGAAATGGGCTTGCATACATCC
98693033 ATTGAAATGGGCTTGCATACATCC
1 ATTGAAATGGGCTTGCATACATCC
98693057 ATTGA
1 ATTGA
98693062 CATTACATGT
Statistics
Matches: 33, Mismatches: 8, Indels: 12
0.62 0.15 0.23
Matches are distributed among these distances:
18 7 0.21
19 3 0.09
20 2 0.06
21 4 0.12
22 2 0.06
23 3 0.09
24 12 0.36
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.32
Consensus pattern (24 bp):
ATTGAAATGGGCTTGCATACATCC
Found at i:98693144 original size:31 final size:31
Alignment explanation
Indices: 98693109--98694060 Score: 1789
Period size: 31 Copynumber: 30.7 Consensus size: 31
98693099 CGTTTACAGT
*
98693109 AAAGGCTTCGGCCCAGTGATATGATTTATGA
1 AAAGGCTACGGCCCAGTGATATGATTTATGA
* *
98693140 AAAGGCTTCAGCCCAGTGATATGATTTATGA
1 AAAGGCTACGGCCCAGTGATATGATTTATGA
98693171 AAAGGCTACGGCCCAGTGATATGATTTATGA
1 AAAGGCTACGGCCCAGTGATATGATTTATGA
98693202 AAAGGCTACGGCCCAGTGATATGATTTATGA
1 AAAGGCTACGGCCCAGTGATATGATTTATGA
98693233 AAAGGCTACGGCCCAGTGATATGATTTATGA
1 AAAGGCTACGGCCCAGTGATATGATTTATGA
98693264 AAAGGCTACGGCCCAGTGATATGATTTATGA
1 AAAGGCTACGGCCCAGTGATATGATTTATGA
98693295 AAAGGCTACGGCCCAGTGATATGATTTATGA
1 AAAGGCTACGGCCCAGTGATATGATTTATGA
98693326 AAAGGCTACGGCCCAGTGATATGATTTATGA
1 AAAGGCTACGGCCCAGTGATATGATTTATGA
98693357 AAAGGCTACGGCCCAGTGATATGATTTATGA
1 AAAGGCTACGGCCCAGTGATATGATTTATGA
98693388 AAAGGCTACGGCCCAGTGATATGATTTATGA
1 AAAGGCTACGGCCCAGTGATATGATTTATGA
98693419 AAAGGCTACGGCCCAGTGATATGATTTATGA
1 AAAGGCTACGGCCCAGTGATATGATTTATGA
98693450 AAAGGCTACGGCCCAGTGATATGATTTATGA
1 AAAGGCTACGGCCCAGTGATATGATTTATGA
98693481 AAAGGCTACGGCCCAGTGATATGATTTATGA
1 AAAGGCTACGGCCCAGTGATATGATTTATGA
98693512 AAAGGCTACGGCCCAGTGATATGATTTATGA
1 AAAGGCTACGGCCCAGTGATATGATTTATGA
98693543 AAAGGCTACGGCCCAGTGATATGATTTATGA
1 AAAGGCTACGGCCCAGTGATATGATTTATGA
98693574 AAAGGCTACGGCCCAGTGATATGATTTATGA
1 AAAGGCTACGGCCCAGTGATATGATTTATGA
98693605 AAAGGCTACGGCCCAGTGATATGATTTATGA
1 AAAGGCTACGGCCCAGTGATATGATTTATGA
98693636 AAAGGCTACGGCCCAGTGATATGATTTATGA
1 AAAGGCTACGGCCCAGTGATATGATTTATGA
98693667 AAAGGCTACGGCCCAGTGATATGATTTATGA
1 AAAGGCTACGGCCCAGTGATATGATTTATGA
98693698 AAAGGCTACGGCCCAGTGATATGATTTATGA
1 AAAGGCTACGGCCCAGTGATATGATTTATGA
98693729 AAAGGCTACGGCCCAGTGATATGATTTATGA
1 AAAGGCTACGGCCCAGTGATATGATTTATGA
98693760 AAAGGCTACGGCCCAGTGATATGATTTATGA
1 AAAGGCTACGGCCCAGTGATATGATTTATGA
98693791 AAAGGCTACGGCCCAGTGATATGATTTATGA
1 AAAGGCTACGGCCCAGTGATATGATTTATGA
98693822 AAAGGCTACGGCCCAGTGATATGATTTATGA
1 AAAGGCTACGGCCCAGTGATATGATTTATGA
98693853 AAAGGCTACGGCCCAGTGATATGATTTATGA
1 AAAGGCTACGGCCCAGTGATATGATTTATGA
98693884 AAAGGCTACGGCCCAGTGATATGATTTATGA
1 AAAGGCTACGGCCCAGTGATATGATTTATGA
98693915 AAAGGCTACGGCCCAGTGATATGATTTATGA
1 AAAGGCTACGGCCCAGTGATATGATTTATGA
* *
98693946 AAAGGCTTCAGCCCAGTGATATGATTTATGA
1 AAAGGCTACGGCCCAGTGATATGATTTATGA
*
98693977 AAAGGCTTCGGCCCAGTGATATGATTTATGA
1 AAAGGCTACGGCCCAGTGATATGATTTATGA
* * * * *
98694008 AAAGGCTTCAGTCTAGTGATATGATTTATGG
1 AAAGGCTACGGCCCAGTGATATGATTTATGA
*
98694039 AAAGGCTTCGGCCCAGT-ATATG
1 AAAGGCTACGGCCCAGTGATATG
98694061 TCAAGACCAA
Statistics
Matches: 908, Mismatches: 13, Indels: 1
0.98 0.01 0.00
Matches are distributed among these distances:
30 5 0.01
31 903 0.99
ACGTcount: A:0.32, C:0.16, G:0.26, T:0.26
Consensus pattern (31 bp):
AAAGGCTACGGCCCAGTGATATGATTTATGA
Found at i:98701042 original size:50 final size:50
Alignment explanation
Indices: 98700919--98701160 Score: 233
Period size: 50 Copynumber: 4.8 Consensus size: 50
98700909 AGCCGAAGCT
* * * * *
98700919 ATCTGATACGCATAGTAGTCTGCACTTAGTACTACACAGGTGAAC-AACA
1 ATCTGATACACGTAGTAGCCTGCACTTAGTACTACACACGTGAACTAACC
* * * * *
98700968 ATTTGGTACACGTAGTAGCTTGCACTTAGTACTACACACGTGACCTCACC
1 ATCTGATACACGTAGTAGCCTGCACTTAGTACTACACACGTGAACTAACC
* * * *
98701018 ATCTGATACACGTAGTAGCCTGCACTTAGTACTACACACATGATCGAAGTC
1 ATCTGATACACGTAGTAGCCTGCACTTAGTACTACACACGTGAACTAA-CC
* *
98701069 AT-TGAGTACGCATAGTAGCCTGCACTTAGTACTACACA--TGCAACTTAA-C
1 ATCTGA-TACACGTAGTAGCCTGCACTTAGTACTACACACGTG-AAC-TAACC
* * *
98701118 AGTATGGTACACGTAGTAGCCTGCACTCAGTACTACACACGTG
1 A-TCTGATACACGTAGTAGCCTGCACTTAGTACTACACACGTG
98701161 TATTCACAAT
Statistics
Matches: 158, Mismatches: 26, Indels: 15
0.79 0.13 0.08
Matches are distributed among these distances:
49 41 0.26
50 78 0.49
51 37 0.23
52 2 0.01
ACGTcount: A:0.31, C:0.25, G:0.19, T:0.26
Consensus pattern (50 bp):
ATCTGATACACGTAGTAGCCTGCACTTAGTACTACACACGTGAACTAACC
Found at i:98703856 original size:27 final size:27
Alignment explanation
Indices: 98703826--98704012 Score: 173
Period size: 27 Copynumber: 6.9 Consensus size: 27
98703816 TCATCTTACC
* *
98703826 CTACATGGGTATGTCGGTCATTTTAAA
1 CTACAAGGGTATTTCGGTCATTTTAAA
* * *
98703853 CTACAAGGATATTTTGGT-AATTTAACA
1 CTACAAGGGTATTTCGGTCATTTTAA-A
*
98703880 CTACAAGGGTATTTCGATCATTTTAAA
1 CTACAAGGGTATTTCGGTCATTTTAAA
* * * *
98703907 CTTCAAGGATATTTTGGT-AATTTAACA
1 CTACAAGGGTATTTCGGTCATTTTAA-A
*
98703934 CTACAAGGGTATTTCGATCATTTTAAA
1 CTACAAGGGTATTTCGGTCATTTTAAA
* * * *
98703961 CTTCAAGGATATTTTGGT-AATTTAACA
1 CTACAAGGGTATTTCGGTCATTTTAA-A
* *
98703988 CTACAAGGGTATTTCGATAATTTTA
1 CTACAAGGGTATTTCGGTCATTTTA
98704013 CAAATTAGGG
Statistics
Matches: 125, Mismatches: 29, Indels: 11
0.76 0.18 0.07
Matches are distributed among these distances:
26 18 0.14
27 90 0.72
28 17 0.14
ACGTcount: A:0.33, C:0.13, G:0.16, T:0.39
Consensus pattern (27 bp):
CTACAAGGGTATTTCGGTCATTTTAAA
Found at i:98703890 original size:54 final size:54
Alignment explanation
Indices: 98703826--98704012 Score: 329
Period size: 54 Copynumber: 3.5 Consensus size: 54
98703816 TCATCTTACC
* * * *
98703826 CTACATGGGTATGTCGGTCATTTTAAACTACAAGGATATTTTGGTAATTTAACA
1 CTACAAGGGTATTTCGATCATTTTAAACTTCAAGGATATTTTGGTAATTTAACA
98703880 CTACAAGGGTATTTCGATCATTTTAAACTTCAAGGATATTTTGGTAATTTAACA
1 CTACAAGGGTATTTCGATCATTTTAAACTTCAAGGATATTTTGGTAATTTAACA
98703934 CTACAAGGGTATTTCGATCATTTTAAACTTCAAGGATATTTTGGTAATTTAACA
1 CTACAAGGGTATTTCGATCATTTTAAACTTCAAGGATATTTTGGTAATTTAACA
*
98703988 CTACAAGGGTATTTCGATAATTTTA
1 CTACAAGGGTATTTCGATCATTTTA
98704013 CAAATTAGGG
Statistics
Matches: 128, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
54 128 1.00
ACGTcount: A:0.33, C:0.13, G:0.16, T:0.39
Consensus pattern (54 bp):
CTACAAGGGTATTTCGATCATTTTAAACTTCAAGGATATTTTGGTAATTTAACA
Found at i:98704029 original size:27 final size:26
Alignment explanation
Indices: 98703993--98704344 Score: 313
Period size: 27 Copynumber: 13.1 Consensus size: 26
98703983 TAACACTACA
*
98703993 AGGGTATTTCGATAATTTTACAAATT
1 AGGGTATTTCGATAATTTTACAAATG
* * *
98704019 AGGGTTGTTTC-AGTTATTTTACAAATC
1 AGGG-TATTTCGA-TAATTTTACAAATG
98704046 AGGGGTATTTCGATAATTTTACAAATTG
1 A-GGGTATTTCGATAATTTTACAAA-TG
*
98704074 AGGGTATTTC-AGTAATTTCAC-AATCG
1 AGGGTATTTCGA-TAATTTTACAAAT-G
* * *
98704100 AGGGTATTT-TAGTAATATTACAAATT
1 AGGGTATTTCGA-TAATTTTACAAATG
*
98704126 AGGGGTATTTCGGTAATTTTACAAATCG
1 A-GGGTATTTCGATAATTTTACAAAT-G
*
98704154 AGGGTATTT-TAGTAATTTTAC-AATCG
1 AGGGTATTTCGA-TAATTTTACAAAT-G
*
98704180 AGGGTATTTCGATAATTTTATAAATCG
1 AGGGTATTTCGATAATTTTACAAAT-G
* *
98704207 AGGGTATTTCAATAAATTTACAAACTG
1 AGGGTATTTCGATAATTTTACAAA-TG
98704234 AGGGTATTTCGATAATTTTACAAATCG
1 AGGGTATTTCGATAATTTTACAAAT-G
* * * *
98704261 AGGGTATTTTGGTGATTTTACAAACCG
1 AGGGTATTTCGATAATTTTACAAA-TG
*
98704288 GGGGTACTTT-GATAATTTTACAAACTG
1 AGGGTA-TTTCGATAATTTTACAAA-TG
* *
98704315 AGGGTATTGCGGTAATTTTACAAACTG
1 AGGGTATTTCGATAATTTTACAAA-TG
98704342 AGG
1 AGG
98704345 ATAGTTTAGT
Statistics
Matches: 272, Mismatches: 34, Indels: 39
0.79 0.10 0.11
Matches are distributed among these distances:
25 1 0.00
26 53 0.19
27 207 0.76
28 11 0.04
ACGTcount: A:0.32, C:0.10, G:0.20, T:0.38
Consensus pattern (26 bp):
AGGGTATTTCGATAATTTTACAAATG
Found at i:98704052 original size:108 final size:108
Alignment explanation
Indices: 98703832--98704269 Score: 344
Period size: 108 Copynumber: 4.1 Consensus size: 108
98703822 TACCCTACAT
* * *
98703832 GGGTATGTCGGTCATTTTAAACTACAAGGATATTTTGGTAATTTAACACTACAAGGGTATTTCGA
1 GGGTATTTCGATCATTTTAAACTTCAAGGATATTTTGGTAATTTAACACTACAAGGGTATTTCGA
* * * * * * *
98703897 TCATTTTA-AACTTCAAGGATATTTTGGTAATTTAAC-ACTACAA
66 TAATTTTACAAATT-AGGGATATTTCGGTAATTTTACAAAT-CAG
98703940 GGGTATTTCGATCATTTTAAACTTCAAGGATATTTTGGTAATTTAACACTACAAGGGTATTTCGA
1 GGGTATTTCGATCATTTTAAACTTCAAGGATATTTTGGTAATTTAACACTACAAGGGTATTTCGA
* * * *
98704005 TAATTTTACAAATTAGGGTTGTTTCAGTTATTTTACAAATCAG
66 TAATTTTACAAATTAGGGATATTTCGGTAATTTTACAAATCAG
* * * * ** * * * *
98704048 GGGTATTTCGATAATTTTACAAATT-GAGGGTATTTCAGTAATTTCACAAT-CGAGGGTATTT-T
1 GGGTATTTCGATCATTTTA-AACTTCAAGGATATTTTGGTAATTTAACACTACAAGGGTATTTCG
* *
98704110 AGTAATATTACAAATTAGGGGTATTTCGGTAATTTTACAAATC-G
65 A-TAATTTTACAAATTAGGGATATTTCGGTAATTTTACAAATCAG
* * * * * * * *
98704154 AGGGTATTT-TAGTAATTTTACAA--TCGAGGGTATTTCGATAATTTTATA-AAT-CGAGGGTAT
1 -GGGTATTTCGA-TCATTTTA-AACTTCAAGGATATTTTGGTAA-TTTA-ACACTACAAGGGTAT
* * * *
98704214 TTCAATAAATTTACAAACTGAGGG-TATTTCGATAATTTTACAAATC-G
61 TTCGATAATTTTACAAA-TTAGGGATATTTCGGTAATTTTACAAATCAG
98704261 AGGGTATTT
1 -GGGTATTT
98704270 TGGTGATTTT
Statistics
Matches: 281, Mismatches: 38, Indels: 23
0.82 0.11 0.07
Matches are distributed among these distances:
105 1 0.00
106 17 0.06
107 123 0.44
108 130 0.46
109 10 0.04
ACGTcount: A:0.33, C:0.11, G:0.18, T:0.39
Consensus pattern (108 bp):
GGGTATTTCGATCATTTTAAACTTCAAGGATATTTTGGTAATTTAACACTACAAGGGTATTTCGA
TAATTTTACAAATTAGGGATATTTCGGTAATTTTACAAATCAG
Found at i:98704145 original size:80 final size:80
Alignment explanation
Indices: 98703993--98704359 Score: 390
Period size: 80 Copynumber: 4.5 Consensus size: 80
98703983 TAACACTACA
* *
98703993 AGGGTATTTC-GATAATTTTACAAAT-TAGGGT-TGTTTCAGTTATTTTACAAATCAGGGGTATT
1 AGGGTATTTCAG-TAATTTTAC-AATCGAGGGTAT-TTT-AGTAATTTTACAAATCAGGGGTATT
*
98704055 TCGATAATTTTACAAATTG
62 TCGATAATTTTACAAACTG
* * * *
98704074 AGGGTATTTCAGTAATTTCACAATCGAGGGTATTTTAGTAATATTACAAATTAGGGGTATTTCGG
1 AGGGTATTTCAGTAATTTTACAATCGAGGGTATTTTAGTAATTTTACAAATCAGGGGTATTTCGA
98704139 TAATTTTACAAA-TCG
66 TAATTTTACAAACT-G
* * *
98704154 AGGGTATTTTAGTAATTTTACAATCGAGGGTA-TTTCGATAATTTTATAAATC-GAGGGTATTTC
1 AGGGTATTTCAGTAATTTTACAATCGAGGGTATTTTAG-TAATTTTACAAATCAG-GGGTATTTC
* *
98704217 AATAAATTTACAAACTG
64 GATAATTTTACAAACTG
* * * *
98704234 AGGGTATTTC-GATAATTTTACAAATCGAGGGTATTTTGGTGATTTTACAAACCGGGGGTACTTT
1 AGGGTATTTCAG-TAATTTTAC-AATCGAGGGTATTTTAGTAATTTTACAAATCAGGGGTA-TTT
98704298 -GATAATTTTACAAACTG
63 CGATAATTTTACAAACTG
* * * * *
98704315 AGGGTATTGCGGTAATTTTACAAACTGAGGATAGTTTAGTAATTT
1 AGGGTATTTCAGTAATTTTACAATC-GAGGGTATTTTAGTAATTT
98704360 CTCTTTATTA
Statistics
Matches: 244, Mismatches: 28, Indels: 28
0.81 0.09 0.09
Matches are distributed among these distances:
79 7 0.03
80 124 0.51
81 102 0.42
82 11 0.05
ACGTcount: A:0.32, C:0.09, G:0.20, T:0.39
Consensus pattern (80 bp):
AGGGTATTTCAGTAATTTTACAATCGAGGGTATTTTAGTAATTTTACAAATCAGGGGTATTTCGA
TAATTTTACAAACTG
Found at i:98704148 original size:107 final size:107
Alignment explanation
Indices: 98703993--98704322 Score: 343
Period size: 107 Copynumber: 3.1 Consensus size: 107
98703983 TAACACTACA
* * * * * *
98703993 AGGGTATTTCGATAATTTTACAAATTAGGGTTGTTTCAGTTATTTTACAAATC-AGGGGTATTTC
1 AGGGTATTTCAATAATATTACAAATTAGGGGTATTTCGGTAATTTTACAAATCGA-GGGTATTT-
* *
98704057 GATAATTTTACAAATTGAGGGTATTTC-AGTAATTTCA-CAATCG
64 GATAATTTTACAAATCGAGGGTATTTCGA-TAATTTCATAAATCG
* * *
98704100 AGGGTATTTTAGTAATATTACAAATTAGGGGTATTTCGGTAATTTTACAAATCGAGGGTATTTTA
1 AGGGTATTTCAATAATATTACAAATTAGGGGTATTTCGGTAATTTTACAAATCGAGGGTATTTGA
*
98704165 GTAATTTTAC-AATCGAGGGTATTTCGATAATTTTATAAATCG
66 -TAATTTTACAAATCGAGGGTATTTCGATAATTTCATAAATCG
* *
98704207 AGGGTATTTCAATAA-ATTTACAAACT-GAGGGTATTTCGATAATTTTACAAATCGAGGGTATTT
1 AGGGTATTTCAATAATA-TTACAAATTAG-GGGTATTTCGGTAATTTTACAAATCGAGGGTA-TT
* * * * * *
98704270 TGGTGATTTTACAAACCGGGGGTACTTT-GATAATTTTACAAA-CTG
63 TGATAATTTTACAAATCGAGGGTA-TTTCGATAATTTCATAAATC-G
98704315 AGGGTATT
1 AGGGTATT
98704323 GCGGTAATTT
Statistics
Matches: 191, Mismatches: 22, Indels: 19
0.82 0.09 0.08
Matches are distributed among these distances:
106 24 0.13
107 129 0.68
108 35 0.18
109 3 0.02
ACGTcount: A:0.32, C:0.09, G:0.20, T:0.39
Consensus pattern (107 bp):
AGGGTATTTCAATAATATTACAAATTAGGGGTATTTCGGTAATTTTACAAATCGAGGGTATTTGA
TAATTTTACAAATCGAGGGTATTTCGATAATTTCATAAATCG
Found at i:98704339 original size:54 final size:54
Alignment explanation
Indices: 98703993--98704344 Score: 357
Period size: 54 Copynumber: 6.6 Consensus size: 54
98703983 TAACACTACA
* * *
98703993 AGGGTATTTC-GATAATTTTACAAA-TTAGGGTTGTTTC-AGTTATTTTACAAATC-
1 AGGGTATTTCAG-TAATTTTACAAACTGAGGG-TATTTCGA-TAATTTTACAAATCG
* *
98704046 AGGGGTATTTC-GATAATTTTACAAATTGAGGGTATTTC-AGTAATTTCAC-AATCG
1 A-GGGTATTTCAG-TAATTTTACAAACTGAGGGTATTTCGA-TAATTTTACAAATCG
* * * *
98704100 AGGGTATTTTAGTAATATTACAAA-TTAGGGGTATTTCGGTAATTTTACAAATCG
1 AGGGTATTTCAGTAATTTTACAAACTGA-GGGTATTTCGATAATTTTACAAATCG
* * *
98704154 AGGGTATTTTAGTAATTTTACAATC-GAGGGTATTTCGATAATTTTATAAATCG
1 AGGGTATTTCAGTAATTTTACAAACTGAGGGTATTTCGATAATTTTACAAATCG
* *
98704207 AGGGTATTTCAATAAATTTACAAACTGAGGGTATTTCGATAATTTTACAAATCG
1 AGGGTATTTCAGTAATTTTACAAACTGAGGGTATTTCGATAATTTTACAAATCG
** * * *
98704261 AGGGTATTTTGGTGATTTTACAAACCGGGGGTACTTT-GATAATTTTACAAA-CTG
1 AGGGTATTTCAGTAATTTTACAAACTGAGGGTA-TTTCGATAATTTTACAAATC-G
* *
98704315 AGGGTATTGCGGTAATTTTACAAACTGAGG
1 AGGGTATTTCAGTAATTTTACAAACTGAGG
98704345 ATAGTTTAGT
Statistics
Matches: 257, Mismatches: 31, Indels: 21
0.83 0.10 0.07
Matches are distributed among these distances:
52 2 0.01
53 87 0.34
54 160 0.62
55 8 0.03
ACGTcount: A:0.32, C:0.10, G:0.20, T:0.38
Consensus pattern (54 bp):
AGGGTATTTCAGTAATTTTACAAACTGAGGGTATTTCGATAATTTTACAAATCG
Found at i:98704720 original size:28 final size:28
Alignment explanation
Indices: 98704677--98704731 Score: 83
Period size: 28 Copynumber: 2.0 Consensus size: 28
98704667 GGCCCCTTTA
* *
98704677 GGCCCAATCTCGTTCACATGGCCCATCG
1 GGCCCAATCACATTCACATGGCCCATCG
*
98704705 GGCCCAATCACATTCATATGGCCCATC
1 GGCCCAATCACATTCACATGGCCCATC
98704732 AAGCCCAACT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 24 1.00
ACGTcount: A:0.22, C:0.38, G:0.18, T:0.22
Consensus pattern (28 bp):
GGCCCAATCACATTCACATGGCCCATCG
Found at i:98704737 original size:28 final size:28
Alignment explanation
Indices: 98704678--98704739 Score: 79
Period size: 28 Copynumber: 2.2 Consensus size: 28
98704668 GCCCCTTTAG
* * **
98704678 GCCCAATCTCGTTCACATGGCCCATCGG
1 GCCCAATCACATTCACATGGCCCATCAA
*
98704706 GCCCAATCACATTCATATGGCCCATCAA
1 GCCCAATCACATTCACATGGCCCATCAA
98704734 GCCCAA
1 GCCCAA
98704740 CTGTAATAGC
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.26, C:0.39, G:0.16, T:0.19
Consensus pattern (28 bp):
GCCCAATCACATTCACATGGCCCATCAA
Found at i:98713512 original size:72 final size:72
Alignment explanation
Indices: 98713429--98714245 Score: 1634
Period size: 72 Copynumber: 11.3 Consensus size: 72
98713419 GGGATGTATC
98713429 CCATGTAGACAAGAGAGCTACGAGAGAGGATAAATGTAACTAGGTCGCATGTGTGATTCCAAGTG
1 CCATGTAGACAAGAGAGCTACGAGAGAGGATAAATGTAACTAGGTCGCATGTGTGATTCCAAGTG
98713494 AAGGACA
66 AAGGACA
98713501 CCATGTAGACAAGAGAGCTACGAGAGAGGATAAATGTAACTAGGTCGCATGTGTGATTCCAAGTG
1 CCATGTAGACAAGAGAGCTACGAGAGAGGATAAATGTAACTAGGTCGCATGTGTGATTCCAAGTG
98713566 AAGGACA
66 AAGGACA
98713573 CCATGTAGACAAGAGAGCTACGAGAGAGGATAAATGTAACTAGGTCGCATGTGTGATTCCAAGTG
1 CCATGTAGACAAGAGAGCTACGAGAGAGGATAAATGTAACTAGGTCGCATGTGTGATTCCAAGTG
98713638 AAGGACA
66 AAGGACA
98713645 CCATGTAGACAAGAGAGCTACGAGAGAGGATAAATGTAACTAGGTCGCATGTGTGATTCCAAGTG
1 CCATGTAGACAAGAGAGCTACGAGAGAGGATAAATGTAACTAGGTCGCATGTGTGATTCCAAGTG
98713710 AAGGACA
66 AAGGACA
98713717 CCATGTAGACAAGAGAGCTACGAGAGAGGATAAATGTAACTAGGTCGCATGTGTGATTCCAAGTG
1 CCATGTAGACAAGAGAGCTACGAGAGAGGATAAATGTAACTAGGTCGCATGTGTGATTCCAAGTG
98713782 AAGGACA
66 AAGGACA
98713789 CCATGTAGACAAGAGAGCTACGAGAGAGGATAAATGTAACTAGGTCGCATGTGTGATTCCAAGTG
1 CCATGTAGACAAGAGAGCTACGAGAGAGGATAAATGTAACTAGGTCGCATGTGTGATTCCAAGTG
98713854 AAGGACA
66 AAGGACA
98713861 CCATGTAGACAAGAGAGCTACGAGAGAGGATAAATGTAACTAGGTCGCATGTGTGATTCCAAGTG
1 CCATGTAGACAAGAGAGCTACGAGAGAGGATAAATGTAACTAGGTCGCATGTGTGATTCCAAGTG
98713926 AAGGACA
66 AAGGACA
98713933 CCATGTAGACAAGAGAGCTACGAGAGAGGATAAATGTAACTAGGTCGCATGTGTGATTCCAAGTG
1 CCATGTAGACAAGAGAGCTACGAGAGAGGATAAATGTAACTAGGTCGCATGTGTGATTCCAAGTG
98713998 AAGGACA
66 AAGGACA
98714005 CCATGTAGACAAGAGAGCTACGAGAGAGGATAAATGTAACTAGGTCGCATGTGTGATTCCAAGTG
1 CCATGTAGACAAGAGAGCTACGAGAGAGGATAAATGTAACTAGGTCGCATGTGTGATTCCAAGTG
98714070 AAGGACA
66 AAGGACA
98714077 CCATGTAGACAAGAGAGCTACGAGAGAGGATAAATGTAACTAGGTCGCATGTGTGATTCCAAGTG
1 CCATGTAGACAAGAGAGCTACGAGAGAGGATAAATGTAACTAGGTCGCATGTGTGATTCCAAGTG
98714142 AAGGACA
66 AAGGACA
98714149 CCATGTAGACAAGAGAGCTACGAGAGAGGATAAATGTAACTAGGTCGCATGTGTGATTCCAAGTG
1 CCATGTAGACAAGAGAGCTACGAGAGAGGATAAATGTAACTAGGTCGCATGTGTGATTCCAAGTG
98714214 AAGGACA
66 AAGGACA
98714221 CCATGTAGACAAGAGAGCTACGAGA
1 CCATGTAGACAAGAGAGCTACGAGA
98714246 TAAATTGGCT
Statistics
Matches: 745, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
72 745 1.00
ACGTcount: A:0.36, C:0.15, G:0.29, T:0.19
Consensus pattern (72 bp):
CCATGTAGACAAGAGAGCTACGAGAGAGGATAAATGTAACTAGGTCGCATGTGTGATTCCAAGTG
AAGGACA
Found at i:98714843 original size:33 final size:33
Alignment explanation
Indices: 98714803--98714868 Score: 123
Period size: 33 Copynumber: 2.0 Consensus size: 33
98714793 TCTAGTTTTA
98714803 AATGAAACATATTTCATGGCTATTTGAATTGTG
1 AATGAAACATATTTCATGGCTATTTGAATTGTG
*
98714836 AATGAAACATATTTTATGGCTATTTGAATTGTG
1 AATGAAACATATTTCATGGCTATTTGAATTGTG
98714869 TACTGGGAGA
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 32 1.00
ACGTcount: A:0.33, C:0.08, G:0.18, T:0.41
Consensus pattern (33 bp):
AATGAAACATATTTCATGGCTATTTGAATTGTG
Found at i:98736968 original size:20 final size:20
Alignment explanation
Indices: 98736935--98737009 Score: 102
Period size: 20 Copynumber: 3.9 Consensus size: 20
98736925 ATACGTGGGA
98736935 TATGATAT--ACATGAT-TG
1 TATGATATGCACATGATATG
98736952 ATATGATATGCACATGATATG
1 -TATGATATGCACATGATATG
*
98736973 TATGATATACACATGATATG
1 TATGATATGCACATGATATG
*
98736993 TATGAAATGCACATGAT
1 TATGATATGCACATGAT
98737010 GTATTCATAA
Statistics
Matches: 51, Mismatches: 3, Indels: 4
0.88 0.05 0.07
Matches are distributed among these distances:
18 8 0.16
20 41 0.80
21 2 0.04
ACGTcount: A:0.39, C:0.09, G:0.17, T:0.35
Consensus pattern (20 bp):
TATGATATGCACATGATATG
Found at i:98737088 original size:26 final size:26
Alignment explanation
Indices: 98737059--98737207 Score: 196
Period size: 26 Copynumber: 5.8 Consensus size: 26
98737049 GAGGAAGTGC
*
98737059 AAAAGGGCTTATGCCACAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTACCG
***
98737085 AAAAGGGCTTATGCCCCAGTTTATTT
1 AAAAGGGCTTATGCCCCAGTTTACCG
98737111 AAAAGGGCTTATGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTACCG
* **
98737137 AAAAGGGCTTATGCCTCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTACCG
98737163 AAAAGGGCTT-TGCCCCAGTTTACC-
1 AAAAGGGCTTATGCCCCAGTTTACCG
*
98737187 AGAAAGGGCTT-TGTCCCAGTT
1 A-AAAGGGCTTATGCCCCAGTT
98737208 ATTAAAAGAG
Statistics
Matches: 108, Mismatches: 14, Indels: 3
0.86 0.11 0.02
Matches are distributed among these distances:
24 1 0.01
25 29 0.27
26 78 0.72
ACGTcount: A:0.27, C:0.22, G:0.23, T:0.28
Consensus pattern (26 bp):
AAAAGGGCTTATGCCCCAGTTTACCG
Found at i:98737137 original size:52 final size:52
Alignment explanation
Indices: 98737059--98737220 Score: 235
Period size: 52 Copynumber: 3.2 Consensus size: 52
98737049 GAGGAAGTGC
*
98737059 AAAAGGGCTTATGCCACAGTTTACCGAAAAGGGCTTATGCCCCAGTTTATTT
1 AAAAGGGCTTATGCCCCAGTTTACCGAAAAGGGCTTATGCCCCAGTTTATTT
* *
98737111 AAAAGGGCTTATGCCCCAGTTTACCGAAAAGGGCTTATGCCTCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTACCGAAAAGGGCTTATGCCCCAGTTTATTT
*
98737163 AAAAGGGCTT-TGCCCCAGTTTACC-AGAAAGGGCTT-TGTCCCAG-TTA-TT
1 AAAAGGGCTTATGCCCCAGTTTACCGA-AAAGGGCTTATGCCCCAGTTTATTT
98737211 AAAAGAGGCT
1 AAAAG-GGCT
98737221 AGGCCTCCAG
Statistics
Matches: 102, Mismatches: 6, Indels: 7
0.89 0.05 0.06
Matches are distributed among these distances:
48 6 0.06
49 7 0.07
50 7 0.07
51 23 0.23
52 59 0.58
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (52 bp):
AAAAGGGCTTATGCCCCAGTTTACCGAAAAGGGCTTATGCCCCAGTTTATTT
Found at i:98744668 original size:26 final size:26
Alignment explanation
Indices: 98744639--98744715 Score: 65
Period size: 26 Copynumber: 3.1 Consensus size: 26
98744629 TGAGGTCACG
98744639 TGTGTAGTACTAAGTGCAGGCTACTA
1 TGTGTAGTACTAAGTGCAGGCTACTA
* * * *
98744665 TGTGTACTGGA-TAATTG--GTC-GC-A
1 TGTGTA--GTACTAAGTGCAGGCTACTA
98744688 TGTGTAGTACTAAGTGCAGGCTACTA
1 TGTGTAGTACTAAGTGCAGGCTACTA
98744714 TG
1 TG
98744716 CGTACCCAAA
Statistics
Matches: 36, Mismatches: 8, Indels: 14
0.62 0.14 0.24
Matches are distributed among these distances:
21 2 0.06
22 5 0.14
23 7 0.19
24 3 0.08
25 3 0.08
26 9 0.25
27 5 0.14
28 2 0.06
ACGTcount: A:0.25, C:0.14, G:0.29, T:0.32
Consensus pattern (26 bp):
TGTGTAGTACTAAGTGCAGGCTACTA
Found at i:98744711 original size:49 final size:49
Alignment explanation
Indices: 98744632--98744815 Score: 244
Period size: 49 Copynumber: 3.7 Consensus size: 49
98744622 ACTATTGTGA
* **
98744632 GGTCACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTACTGGATAATT
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAATT
* * *
98744681 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCA-AAAACTGT
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTA-CCAGATAA-T-T
* * *
98744732 GATCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTATT
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAATT
*
98744781 GGTCACATGTGTGGTACTAAGTGCAGGCTACTATG
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTATG
98744816 CTACCAAATA
Statistics
Matches: 116, Mismatches: 15, Indels: 8
0.83 0.11 0.06
Matches are distributed among these distances:
49 72 0.62
50 6 0.05
51 38 0.33
ACGTcount: A:0.26, C:0.18, G:0.27, T:0.29
Consensus pattern (49 bp):
GGTCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAATT
Found at i:98744812 original size:100 final size:99
Alignment explanation
Indices: 98744634--98744820 Score: 302
Period size: 100 Copynumber: 1.9 Consensus size: 99
98744624 TATTGTGAGG
* * ** *
98744634 TCACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTACTGGATAATTGGTCGCATGTGTAGTACT
1 TCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCACATGTGTAGTACT
98744699 AAGTGCAGGCTACTATGCGTACCCAAAAACTGTGA
66 AAGTGCAGGCTACTATGC-TACCCAAAAACTGTGA
* *
98744734 TCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTATTGGTCACATGTGTGGTACT
1 TCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCACATGTGTAGTACT
98744799 AAGTGCAGGCTACTATGCTACC
66 AAGTGCAGGCTACTATGCTACC
98744821 AAATAGCTTC
Statistics
Matches: 80, Mismatches: 7, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
99 4 0.05
100 76 0.95
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.29
Consensus pattern (99 bp):
TCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCACATGTGTAGTACT
AAGTGCAGGCTACTATGCTACCCAAAAACTGTGA
Found at i:98756836 original size:27 final size:27
Alignment explanation
Indices: 98756806--98756983 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
98756796 ATATTGAGTC
* * * *
98756806 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
98756833 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
98756860 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
98756888 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
98756915 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
98756942 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
98756969 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
98756984 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:98756945 original size:82 final size:81
Alignment explanation
Indices: 98756827--98756982 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
98756817 TGCTATATAA
* *
98756827 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
98756892 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
98756909 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
98756973 CACTTAGTGC
65 CACTTAGTGC
98756983 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:98758321 original size:18 final size:18
Alignment explanation
Indices: 98758278--98758322 Score: 56
Period size: 18 Copynumber: 2.5 Consensus size: 18
98758268 TGAAGCCTTT
*
98758278 TTTTCTTTTTTTTTTTCA
1 TTTTCTTTTTTTTATTCA
*
98758296 TTTGCTTTCTTTTTATTC-
1 TTTTCTTT-TTTTTATTCA
98758314 TTTTCTTTT
1 TTTTCTTTT
98758323 ATTCATTAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 3
0.79 0.10 0.10
Matches are distributed among these distances:
17 1 0.04
18 14 0.61
19 8 0.35
ACGTcount: A:0.04, C:0.13, G:0.02, T:0.80
Consensus pattern (18 bp):
TTTTCTTTTTTTTATTCA
Found at i:98761072 original size:40 final size:40
Alignment explanation
Indices: 98761040--98761951 Score: 1677
Period size: 40 Copynumber: 22.8 Consensus size: 40
98761030 CCAGCATGAT
* * * * *
98761040 TGCTCTTCGGGACCTAGCCCGGATATAACACCAGCACGAA
1 TGCTCTTCGGAACTTAGCACGGATATATCACTAGCACGAA
98761080 TGCTCTTCGGAACTTAGCACGGATATATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGCACGGATATATCACTAGCACGAA
98761120 TGCTCTTCGGAACTTAGTC-CGGATATATCACTAGCACGAA
1 TGCTCTTCGGAACTTAG-CACGGATATATCACTAGCACGAA
*
98761160 TGCTCTTCGGAACTTAGTC-CGGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAG-CACGGATATATCACTAGCACGAA
98761200 TGCTCTTCGGAACTTAGCACGGATATATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGCACGGATATATCACTAGCACGAA
98761240 TGCTCTTCGGAACTTAGCACGGATATATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGCACGGATATATCACTAGCACGAA
98761280 TGCTCTTCGGAACTTAGCACGGATATATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGCACGGATATATCACTAGCACGAA
98761320 TGCTCTTCGGAACTTAGCACGGATATATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGCACGGATATATCACTAGCACGAA
98761360 TGCTCTTCGGAACTTAGCACGGATATATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGCACGGATATATCACTAGCACGAA
98761400 TGCTCTTCGGAACTTAGCACGGATATATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGCACGGATATATCACTAGCACGAA
98761440 TGCTCTTCGGAACTTAGCACGGATATATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGCACGGATATATCACTAGCACGAA
98761480 TGCTCTTCGGAACTTAGCACGGATATATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGCACGGATATATCACTAGCACGAA
98761520 TGCTCTTCGGAACTTAGCACGGATATATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGCACGGATATATCACTAGCACGAA
98761560 TGCTCTTCGGAACTTAGCACGGATATATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGCACGGATATATCACTAGCACGAA
98761600 TGCTCTTCGGAACTTAGCACGGATATATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGCACGGATATATCACTAGCACGAA
98761640 TGCTCTTCGGAACTTAGCACGGATATATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGCACGGATATATCACTAGCACGAA
98761680 TGCTCTTCGGAACTTAGCACGGATATATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGCACGGATATATCACTAGCACGAA
98761720 TGCTCTTCGGAACTTAGCACGGATATATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGCACGGATATATCACTAGCACGAA
98761760 TGCTCTTCGGAACTTAGCACGGATATATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGCACGGATATATCACTAGCACGAA
98761800 TGCTCTTCGGAACTTAGCACGGATATATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGCACGGATATATCACTAGCACGAA
98761840 TGCTCTTCGGAACTTAGCACGGATATATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGCACGGATATATCACTAGCACGAA
*
98761880 TGCTCTTCGGAACTTAGTC-CGAATATATCACTAGCACGAA
1 TGCTCTTCGGAACTTAG-CACGGATATATCACTAGCACGAA
* * * *
98761920 TGCTCTTTGGGACTTAGCCCGAATATATCACT
1 TGCTCTTCGGAACTTAGCACGGATATATCACT
98761952 CTCAATTCTC
Statistics
Matches: 858, Mismatches: 10, Indels: 8
0.98 0.01 0.01
Matches are distributed among these distances:
39 2 0.00
40 854 1.00
41 2 0.00
ACGTcount: A:0.29, C:0.25, G:0.20, T:0.25
Consensus pattern (40 bp):
TGCTCTTCGGAACTTAGCACGGATATATCACTAGCACGAA
Found at i:98763215 original size:37 final size:37
Alignment explanation
Indices: 98763165--98763243 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
98763155 TTATTACGAA
* * *
98763165 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
98763202 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
98763239 GTCTT
1 GTCTT
98763244 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:98763440 original size:47 final size:47
Alignment explanation
Indices: 98763362--98763772 Score: 750
Period size: 47 Copynumber: 8.7 Consensus size: 47
98763352 CCCTTCGGGA
* * * * * *
98763362 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
98763409 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
98763456 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
98763503 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
98763550 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
98763597 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
98763644 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
98763691 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
98763738 CTTATCACATATATACACTTTCACATTCATCACAT
1 CTTATCACATATATACACTTTCACATTCATCACAT
98763773 AGAATCCTAA
Statistics
Matches: 354, Mismatches: 10, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
47 354 1.00
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:98769437 original size:27 final size:27
Alignment explanation
Indices: 98769407--98769584 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
98769397 ATATTGAGTC
* * * *
98769407 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
98769434 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
98769461 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
98769489 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
98769516 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
98769543 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
98769570 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
98769585 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:98769546 original size:82 final size:81
Alignment explanation
Indices: 98769428--98769583 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
98769418 TGCTATATAA
* *
98769428 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
98769493 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
98769510 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
98769574 CACTTAGTGC
65 CACTTAGTGC
98769584 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:98772442 original size:24 final size:24
Alignment explanation
Indices: 98772404--98772453 Score: 73
Period size: 24 Copynumber: 2.1 Consensus size: 24
98772394 GAGATATTAA
* *
98772404 CATAATTTTGAGATTTCTATGGAT
1 CATAATTTAGAGATTTCTACGGAT
*
98772428 CATAATTTAGGGATTTCTACGGAT
1 CATAATTTAGAGATTTCTACGGAT
98772452 CA
1 CA
98772454 ATACACAAGT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.30, C:0.12, G:0.18, T:0.40
Consensus pattern (24 bp):
CATAATTTAGAGATTTCTACGGAT
Found at i:98776214 original size:46 final size:46
Alignment explanation
Indices: 98776039--98776214 Score: 173
Period size: 46 Copynumber: 3.8 Consensus size: 46
98776029 TGTAACCCAC
* * * *
98776039 CCATAAGCGAACCCGGACTCAACTCAACGAGCTCGGGCATTCGTAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
* *
98776085 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCAGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTC-G--GAC-A-TTCGCAT
* * *
98776135 CTCA-CA---AATTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 C-CATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
*
98776178 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
98776215 TGCCCAAATA
Statistics
Matches: 107, Mismatches: 12, Indels: 22
0.76 0.09 0.16
Matches are distributed among these distances:
42 4 0.04
43 6 0.06
44 2 0.02
46 60 0.56
47 24 0.22
49 2 0.02
50 5 0.05
51 4 0.04
ACGTcount: A:0.31, C:0.30, G:0.19, T:0.20
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
Found at i:98782074 original size:26 final size:27
Alignment explanation
Indices: 98782031--98782083 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 27
98782021 GACCCTCAGT
98782031 TGATAAAATGACTATTATGCCCCTATG
1 TGATAAAATGACTATTATGCCCCTATG
* * *
98782058 TGAT-AAATGAGTGTTATGCCCTTATG
1 TGATAAAATGACTATTATGCCCCTATG
98782084 AGATGTACAA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
26 19 0.83
27 4 0.17
ACGTcount: A:0.30, C:0.15, G:0.19, T:0.36
Consensus pattern (27 bp):
TGATAAAATGACTATTATGCCCCTATG
Found at i:98786192 original size:14 final size:14
Alignment explanation
Indices: 98786173--98786206 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
98786163 AAAAGCATAT
98786173 CAGTCATACAACCA
1 CAGTCATACAACCA
**
98786187 CAGTCATACATTCA
1 CAGTCATACAACCA
98786201 CAGTCA
1 CAGTCA
98786207 AAGCAGTCAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.38, C:0.32, G:0.09, T:0.21
Consensus pattern (14 bp):
CAGTCATACAACCA
Found at i:98786388 original size:27 final size:27
Alignment explanation
Indices: 98786286--98786381 Score: 128
Period size: 27 Copynumber: 3.7 Consensus size: 27
98786276 ATGGTTATTT
98786286 TACCCTACAAGGGTA-TT---TAATCC
1 TACCCTACAAGGGTATTTCGATAATCC
* *
98786309 TACCTTACAGGGGTATTTCGATAATCC
1 TACCCTACAAGGGTATTTCGATAATCC
* *
98786336 TACCCTACAAGGGTATTTCGTTAATTC
1 TACCCTACAAGGGTATTTCGATAATCC
98786363 TACCCTACAAGGGTATTTC
1 TACCCTACAAGGGTATTTC
98786382 AGTAATTTCA
Statistics
Matches: 63, Mismatches: 6, Indels: 4
0.86 0.08 0.05
Matches are distributed among these distances:
23 13 0.21
24 2 0.03
27 48 0.76
ACGTcount: A:0.27, C:0.24, G:0.16, T:0.33
Consensus pattern (27 bp):
TACCCTACAAGGGTATTTCGATAATCC
Found at i:98786939 original size:20 final size:20
Alignment explanation
Indices: 98786914--98786953 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
98786904 AGAACAACAA
98786914 GCTAGGGTTCGACCATCTAT
1 GCTAGGGTTCGACCATCTAT
98786934 GCTAGGGTTCGACCATCTAT
1 GCTAGGGTTCGACCATCTAT
98786954 TTAGCTCAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.20, C:0.25, G:0.25, T:0.30
Consensus pattern (20 bp):
GCTAGGGTTCGACCATCTAT
Found at i:98802465 original size:22 final size:22
Alignment explanation
Indices: 98802437--98802485 Score: 98
Period size: 22 Copynumber: 2.2 Consensus size: 22
98802427 TTGTATTACA
98802437 AGTAAACTTCTAAATCAAATTC
1 AGTAAACTTCTAAATCAAATTC
98802459 AGTAAACTTCTAAATCAAATTC
1 AGTAAACTTCTAAATCAAATTC
98802481 AGTAA
1 AGTAA
98802486 GAATGGATTT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 27 1.00
ACGTcount: A:0.47, C:0.16, G:0.06, T:0.31
Consensus pattern (22 bp):
AGTAAACTTCTAAATCAAATTC
Found at i:98804832 original size:21 final size:21
Alignment explanation
Indices: 98804795--98804834 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
98804785 TTTAAAAATT
98804795 TAACATAATATAATATTTACA
1 TAACATAATATAATATTTACA
*
98804816 TAACAATAA-ATATTATTTA
1 TAAC-ATAATATAATATTTA
98804835 ATTAAAATAA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
21 13 0.76
22 4 0.24
ACGTcount: A:0.53, C:0.07, G:0.00, T:0.40
Consensus pattern (21 bp):
TAACATAATATAATATTTACA
Found at i:98804904 original size:43 final size:43
Alignment explanation
Indices: 98804856--98804946 Score: 119
Period size: 43 Copynumber: 2.1 Consensus size: 43
98804846 ATAATTTTTT
* *
98804856 TAAAGGTAATATTTTTTAGCGGCGTTTGTGAGAAAAGCGCCGC
1 TAAAGGTAATATTCTTTAGCGGCGTTTGTGAGAAAAGCGCAGC
* * * * *
98804899 TAAAGGTCATGTTCTTTAGCGTCGTTTTTGGGAAAAGCGCAGC
1 TAAAGGTAATATTCTTTAGCGGCGTTTGTGAGAAAAGCGCAGC
98804942 TAAAG
1 TAAAG
98804947 ATCATGTTCT
Statistics
Matches: 41, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
43 41 1.00
ACGTcount: A:0.27, C:0.14, G:0.27, T:0.31
Consensus pattern (43 bp):
TAAAGGTAATATTCTTTAGCGGCGTTTGTGAGAAAAGCGCAGC
Found at i:98804952 original size:43 final size:43
Alignment explanation
Indices: 98804870--98804961 Score: 130
Period size: 43 Copynumber: 2.1 Consensus size: 43
98804860 GGTAATATTT
* *
98804870 TTTAGCGGCGTTTGTGAGAAAAGCGCCGCTAAAGGTCATGTTC
1 TTTAGCGGCGTTTGTGAGAAAAGCGCAGCTAAAGATCATGTTC
* * *
98804913 TTTAGCGTCGTTTTTGGGAAAAGCGCAGCTAAAGATCATGTTC
1 TTTAGCGGCGTTTGTGAGAAAAGCGCAGCTAAAGATCATGTTC
*
98804956 TATAGC
1 TTTAGC
98804962 AGCTTTTTTT
Statistics
Matches: 43, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
43 43 1.00
ACGTcount: A:0.25, C:0.17, G:0.27, T:0.30
Consensus pattern (43 bp):
TTTAGCGGCGTTTGTGAGAAAAGCGCAGCTAAAGATCATGTTC
Found at i:98810539 original size:48 final size:48
Alignment explanation
Indices: 98810374--98810613 Score: 204
Period size: 48 Copynumber: 5.1 Consensus size: 48
98810364 CTCACACATA
* * * *
98810374 TCATAT-AATGCCAATGTCA-GATCCCATATATGGTCTTACATGGGATC
1 TCATATCAATGCCAATGCCATG-TCCCAGACATGGTCTTATATGGGATC
** * * * * * * *
98810421 TCA-ACTCGGTGCCGATGCCATATCCCAGATATGGCCTTATTTAGGACC
1 TCATA-TCAATGCCAATGCCATGTCCCAGACATGGTCTTATATGGGATC
* * *
98810469 TCATA-CGATGCC-ATGCCATGTCCTAGACATGGTCTTATACGGGATC
1 TCATATCAATGCCAATGCCATGTCCCAGACATGGTCTTATATGGGATC
* * * * *
98810515 TCATAAT-GATGCTAATGCCATGTCCCAAACATGGTTTTATATAGGATC
1 TCAT-ATCAATGCCAATGCCATGTCCCAGACATGGTCTTATATGGGATC
* *
98810563 TCATGTCAATGCCGATGCCATGTCCCAGACATGGTCTTATATGGGATC
1 TCATATCAATGCCAATGCCATGTCCCAGACATGGTCTTATATGGGATC
98810611 TCA
1 TCA
98810614 ATAACCCTAA
Statistics
Matches: 152, Mismatches: 33, Indels: 15
0.76 0.17 0.08
Matches are distributed among these distances:
46 31 0.20
47 17 0.11
48 103 0.68
49 1 0.01
ACGTcount: A:0.26, C:0.24, G:0.20, T:0.30
Consensus pattern (48 bp):
TCATATCAATGCCAATGCCATGTCCCAGACATGGTCTTATATGGGATC
Found at i:98814481 original size:33 final size:33
Alignment explanation
Indices: 98814435--98814499 Score: 103
Period size: 33 Copynumber: 2.0 Consensus size: 33
98814425 TCCCCCATTA
*
98814435 CTTGATCCACTCCTCAAAACTCTCCTCCAATCC
1 CTTGATCCACTCCTCAAAACTCTCCTCAAATCC
* *
98814468 CTTGATTCGCTCCTCAAAACTCTCCTCAAATC
1 CTTGATCCACTCCTCAAAACTCTCCTCAAATC
98814500 TCTCAACCAT
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
33 29 1.00
ACGTcount: A:0.25, C:0.42, G:0.05, T:0.29
Consensus pattern (33 bp):
CTTGATCCACTCCTCAAAACTCTCCTCAAATCC
Found at i:98818742 original size:50 final size:50
Alignment explanation
Indices: 98818665--98819108 Score: 459
Period size: 50 Copynumber: 8.8 Consensus size: 50
98818655 ACCGAAGCTC
* *
98818665 TCTGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTAACAA
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACCTAACAA
* * * * *
98818715 TTTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGAGCTAACCA
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACCTAACAA
** * * * * *
98818765 TC-GGATACATGTAGCAGCCTGCACTTAGTACTACACACGTGATCGAAGCTA
1 TCTGG-TACACATAGTAGCCTGCACTTAGTACTACACATGTGACCTAA-CAA
* * **
98818816 TCGGGTACGCATAGTAGCCTGCACTTAGTACTACACATCCGACCTAACAA
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACCTAACAA
* *
98818866 TCTGGTACACGA-AGTAGCCTGCACTTAGTACTACACACGTGACCTAACCA
1 TCTGGTACAC-ATAGTAGCCTGCACTTAGTACTACACATGTGACCTAACAA
* * * * * *
98818916 TC-GAATACACGTAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGCTA
1 TCTG-GTACACATAGTAGCCTGCACTTAGTACTACACATGTGACCTAA-CAA
* ** * *
98818967 TCGGGTATGCATAGTAG-CTGCACTTAGTACTACACATGCGACCTAAAAA
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACCTAACAA
*
98819016 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACATATGACCTAA-AA
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACCTAACAA
* *
98819065 -CTGTCTTAATCACATAGTAGCCTGCACATAGTACTACACATGTG
1 TCTG--GT-A-CACATAGTAGCCTGCACTTAGTACTACACATGTG
98819109 TTCTCACAAC
Statistics
Matches: 329, Mismatches: 52, Indels: 24
0.81 0.13 0.06
Matches are distributed among these distances:
48 3 0.01
49 20 0.06
50 219 0.67
51 52 0.16
52 35 0.11
ACGTcount: A:0.31, C:0.26, G:0.18, T:0.25
Consensus pattern (50 bp):
TCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACCTAACAA
Done.