Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr3
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 100348136
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 3062571 characters in sequence are not A, C, G, or T
File 288 of 290
Found at i:99379165 original size:91 final size:89
Alignment explanation
Indices: 99379004--99379180 Score: 232
Period size: 91 Copynumber: 2.0 Consensus size: 89
99378994 TTTGACAACA
* * * * *
99379004 GAAATTGAAATTACCTCGGCGTGTCCTGAGGCTCAACTCATCTCTCGCAATATGAGTTGATTTTT
1 GAAATTGAAAATACCTCGGCGTGTCCTGAGGCTCAACTCACCGCTCACAATACGAGTTGA-TTTT
99379069 TTTTGA-AAGGCAGAAATTGAAAAACG
65 TTTTGACAA--CAGAAATTGAAAAACG
* *
99379095 GAAATTGAAAATACCTCGGCGTGTGACTTGAGGCTCAACTCGCCGCTCACAATACGAGTTGA-TT
1 GAAATTGAAAATACCTCGGCGTGT--CCTGAGGCTCAACTCACCGCTCACAATACGAGTTGATTT
99379159 TTTTTGACAACAGAAATTGAAA
64 TTTTTGACAACAGAAATTGAAA
99379181 TTACCTCAGC
Statistics
Matches: 76, Mismatches: 7, Indels: 7
0.84 0.08 0.08
Matches are distributed among these distances:
90 12 0.16
91 32 0.42
92 2 0.03
93 30 0.39
ACGTcount: A:0.32, C:0.19, G:0.21, T:0.29
Consensus pattern (89 bp):
GAAATTGAAAATACCTCGGCGTGTCCTGAGGCTCAACTCACCGCTCACAATACGAGTTGATTTTT
TTTGACAACAGAAATTGAAAAACG
Found at i:99379228 original size:74 final size:75
Alignment explanation
Indices: 99379095--99379422 Score: 220
Period size: 76 Copynumber: 4.1 Consensus size: 75
99379085 TTGAAAAACG
* * * * *
99379095 GAAATTGAAAATACCTCGGCGTGTGACTTGAGGCTCAACTCGCCGCTCACAATACGAGTTGA-TT
1 GAAATTGAAATTACCTCAGCGTGT--CTTGAGGCTCAACTCACCTCTCGCAATACGAGTTGATTT
99379159 TTTTTGACAA-CA
64 TTTTTGA-AAGCA
* *
99379171 GAAATTGAAATTACCTCAGCGTGTCTTGAGGCTCAACTCATCTCTCGCAATATGAGTTGATTTTT
1 GAAATTGAAATTACCTCAGCGTGTCTTGAGGCTCAACTCACCTCTCGCAATACGAGTTGA-TTTT
99379236 TTTTGAAAGGCA
65 TTTTGAAA-GCA
** * * * * * * *
99379248 GAAATTGTAAAACGGAAATTGAAAAT-A-CCTCGGCGTGTGACTTGAGGCTCAACTCGCCTCTCG
1 GAAA-T-T------GAAATT--ACCTCAGCGT-GTCTTGAGGC-TCA-ACTC-A----CCTCTCG
99379311 CAATACGAGTTGA-TTTTTTT-ACAA-CA
48 CAATACGAGTTGATTTTTTTTGA-AAGCA
* *
99379337 GAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
1 GAAATTGAAATTACCTCAGCGTGTCTTGAGGCTCAACTCACCTCTCGCAATACGAGTTGATTTTT
99379402 TTTGAAAGCCA
66 TTTGAAAG-CA
99379413 GAAATTGAAA
1 GAAATTGAAA
99379423 AACGGAAATT
Statistics
Matches: 195, Mismatches: 28, Indels: 58
0.69 0.10 0.21
Matches are distributed among these distances:
73 19 0.10
74 40 0.21
75 3 0.02
76 43 0.22
77 7 0.04
78 4 0.02
79 5 0.03
80 7 0.04
81 8 0.04
85 8 0.04
86 7 0.04
87 5 0.03
88 4 0.02
89 7 0.04
90 1 0.01
91 9 0.05
93 18 0.09
ACGTcount: A:0.30, C:0.20, G:0.20, T:0.30
Consensus pattern (75 bp):
GAAATTGAAATTACCTCAGCGTGTCTTGAGGCTCAACTCACCTCTCGCAATACGAGTTGATTTTT
TTTGAAAGCA
Found at i:99379237 original size:76 final size:75
Alignment explanation
Indices: 99379095--99379259 Score: 199
Period size: 74 Copynumber: 2.1 Consensus size: 75
99379085 TTGAAAAACG
* *
99379095 GAAATTGAAAATACCTCGGCGTGTGACTTGAGGCTCAACTCGCCGCTCACAATACGAGTTGATTT
1 GAAATTGAAAATACCTCAGCGTGT-ACTTGAGGCTCAACTCACCGCTCACAATACGAGTTGATTT
99379160 TTTTGACAA-CA
65 TTTTGA-AAGCA
* * * * *
99379171 GAAATTGAAATTACCTCAGCGTGT-CTTGAGGCTCAACTCATCTCTCGCAATATGAGTTGATTTT
1 GAAATTGAAAATACCTCAGCGTGTACTTGAGGCTCAACTCACCGCTCACAATACGAGTTGA--TT
99379235 TTTTTGAAAGGCA
64 TTTTTGAAA-GCA
99379248 GAAATTGTAAAA
1 GAAATTG-AAAA
99379260 CGGAAATTGA
Statistics
Matches: 76, Mismatches: 8, Indels: 8
0.83 0.09 0.09
Matches are distributed among these distances:
74 31 0.41
75 2 0.03
76 31 0.41
77 9 0.12
78 3 0.04
ACGTcount: A:0.30, C:0.19, G:0.20, T:0.31
Consensus pattern (75 bp):
GAAATTGAAAATACCTCAGCGTGTACTTGAGGCTCAACTCACCGCTCACAATACGAGTTGATTTT
TTTGAAAGCA
Found at i:99379369 original size:166 final size:166
Alignment explanation
Indices: 99378768--99379738 Score: 1612
Period size: 165 Copynumber: 5.8 Consensus size: 166
99378758 TAAATTGAAA
* * * * * *
99378768 AAAATACCTCCGTGTGTGA-TCTGAAGCTCAACTCACCTTTCGCAATATGAGTTGATTTTTTTTG
1 AAAATACCTCGGCGTGTGACT-TGAGGCTCAACTCGCCTCTCGCAATACGAGTTGA-TTTTTTTG
* * * * *
99378832 AAAGACAGAAATTGAAAATAGCTCAGCGTGAACC-AAGGCTCAACTCACCTCTCGCAATATGAGT
64 ACA-ACAGAAATTGAAATTACCTCAGCGTG-TCCTGAGGCTCAACTCACCTCTCGCAATATGAGT
*
99378896 CGA-TTTTTTTGAAAGGCAGAAATTGAAAAACGGAAATTG
127 TGATTTTTTTTGAAAGGCAGAAATTGAAAAACGGAAATTG
* *
99378935 AAAATACCTCGGCGTGTGACTTGAGGCTCAACTCACCTTTCGCAATACGAGTTGATTTTTTTGAC
1 AAAATACCTCGGCGTGTGACTTGAGGCTCAACTCGCCTCTCGCAATACGAGTTGATTTTTTTGAC
* *
99379000 AACAGAAATTGAAATTACCTCGGCGTGTCCTGAGGCTCAACTCATCTCTCGCAATATGAGTTGAT
66 AACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-
99379065 TTTTTTTTGAAAGGCAGAAATTGAAAAACGGAAATTG
130 TTTTTTTTGAAAGGCAGAAATTGAAAAACGGAAATTG
* *
99379102 AAAATACCTCGGCGTGTGACTTGAGGCTCAACTCGCCGCTCACAATACGAGTTGATTTTTTTGAC
1 AAAATACCTCGGCGTGTGACTTGAGGCTCAACTCGCCTCTCGCAATACGAGTTGATTTTTTTGAC
* *
99379167 AACAGAAATTGAAATTACCTCAGCGTGTCTTGAGGCTCAACTCATCTCTCGCAATATGAGTTGAT
66 AACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-
*
99379232 TTTTTTTTGAAAGGCAGAAATTGTAAAACGGAAATTG
130 TTTTTTTTGAAAGGCAGAAATTGAAAAACGGAAATTG
99379269 AAAATACCTCGGCGTGTGACTTGAGGCTCAACTCGCCTCTCGCAATACGAGTTGATTTTTTT-AC
1 AAAATACCTCGGCGTGTGACTTGAGGCTCAACTCGCCTCTCGCAATACGAGTTGATTTTTTTGAC
99379333 AACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
66 AACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
*
99379398 TTTTTTTGAAAGCCAGAAATTGAAAAACGGAAATTG
131 TTTTTTTGAAAGGCAGAAATTGAAAAACGGAAATTG
* *
99379434 AAAATACCTCTGCGTGTGACCTGAGGCTCAACTCGCCTCTCGCAATACGAGTTGATTTTTTT-AC
1 AAAATACCTCGGCGTGTGACTTGAGGCTCAACTCGCCTCTCGCAATACGAGTTGATTTTTTTGAC
99379498 AACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
66 AACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
*
99379563 TTTTTTTGAAAGCCAGAAATTGAAAAACGGAAATTG
131 TTTTTTTGAAAGGCAGAAATTGAAAAACGGAAATTG
*
99379599 AAAATACCTCGGCGTGTGACCTGAGGCTCAACTCGCCTCTCGCAATACGAGTTGATTTTTTTGAC
1 AAAATACCTCGGCGTGTGACTTGAGGCTCAACTCGCCTCTCGCAATACGAGTTGATTTTTTTGAC
99379664 AACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-
66 AACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
99379728 TTTTTTTGAAA
131 TTTTTTTGAAA
99379739 ATACCTCAGC
Statistics
Matches: 771, Mismatches: 28, Indels: 12
0.95 0.03 0.01
Matches are distributed among these distances:
164 2 0.00
165 323 0.42
166 140 0.18
167 305 0.40
168 1 0.00
ACGTcount: A:0.30, C:0.20, G:0.20, T:0.30
Consensus pattern (166 bp):
AAAATACCTCGGCGTGTGACTTGAGGCTCAACTCGCCTCTCGCAATACGAGTTGATTTTTTTGAC
AACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
TTTTTTTGAAAGGCAGAAATTGAAAAACGGAAATTG
Found at i:99379385 original size:73 final size:74
Alignment explanation
Indices: 99379262--99379403 Score: 223
Period size: 73 Copynumber: 1.9 Consensus size: 74
99379252 TTGTAAAACG
* * *
99379262 GAAATTGAAAATACCTCGGCGTGTGACTTGAGGCTCAACTCGCCTCTCGCAATACGAGTTGATTT
1 GAAATTGAAAATACCTCAGCGTGT-ACCTGAGGCTCAACTCACCTCTCGCAATACGAGTTGATTT
99379327 TTTTACAACA
65 TTTTACAACA
* *
99379337 GAAATTGAAATTACCTCAGCGTGT-CCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
1 GAAATTGAAAATACCTCAGCGTGTACCTGAGGCTCAACTCACCTCTCGCAATACGAGTTGATTTT
99379401 TTT
66 TTT
99379404 TGAAAGCCAG
Statistics
Matches: 62, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
73 40 0.65
75 22 0.35
ACGTcount: A:0.27, C:0.23, G:0.19, T:0.32
Consensus pattern (74 bp):
GAAATTGAAAATACCTCAGCGTGTACCTGAGGCTCAACTCACCTCTCGCAATACGAGTTGATTTT
TTTACAACA
Found at i:99379403 original size:75 final size:74
Alignment explanation
Indices: 99379262--99379423 Score: 211
Period size: 73 Copynumber: 2.1 Consensus size: 74
99379252 TTGTAAAACG
* * *
99379262 GAAATTGAAAATACCTCGGCGTGTGACTTGAGGCTCAACTCGCCTCTCGCAATACGAGTTGATTT
1 GAAATTGAAAATACCTCAGCGTGT-ACCTGAGGCTCAACTCACCTCTCGCAATACGAGTTGATTT
*
99379327 TTTTACAA-CA
65 TTTGA-AACCA
* *
99379337 GAAATTGAAATTACCTCAGCGTGT-CCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
1 GAAATTGAAAATACCTCAGCGTGTACCTGAGGCTCAACTCACCTCTCGCAATACGAGTTGA--TT
99379401 TTTTGAAAGCCA
64 TTTTGAAA-CCA
99379413 GAAATTGAAAA
1 GAAATTGAAAA
99379424 ACGGAAATTG
Statistics
Matches: 76, Mismatches: 7, Indels: 7
0.84 0.08 0.08
Matches are distributed among these distances:
73 33 0.43
74 2 0.03
75 29 0.38
76 12 0.16
ACGTcount: A:0.30, C:0.21, G:0.19, T:0.30
Consensus pattern (74 bp):
GAAATTGAAAATACCTCAGCGTGTACCTGAGGCTCAACTCACCTCTCGCAATACGAGTTGATTTT
TTGAAACCA
Found at i:99379548 original size:73 final size:74
Alignment explanation
Indices: 99379427--99379568 Score: 232
Period size: 73 Copynumber: 1.9 Consensus size: 74
99379417 TTGAAAAACG
* *
99379427 GAAATTGAAAATACCTCTGCGTGTGACCTGAGGCTCAACTCGCCTCTCGCAATACGAGTTGATTT
1 GAAATTGAAAATACCTCAGCGTGT-ACCTGAGGCTCAACTCACCTCTCGCAATACGAGTTGATTT
99379492 TTTTACAACA
65 TTTTACAACA
* *
99379502 GAAATTGAAATTACCTCAGCGTGT-CCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
1 GAAATTGAAAATACCTCAGCGTGTACCTGAGGCTCAACTCACCTCTCGCAATACGAGTTGATTTT
99379566 TTT
66 TTT
99379569 TGAAAGCCAG
Statistics
Matches: 63, Mismatches: 4, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
73 41 0.65
75 22 0.35
ACGTcount: A:0.27, C:0.23, G:0.18, T:0.32
Consensus pattern (74 bp):
GAAATTGAAAATACCTCAGCGTGTACCTGAGGCTCAACTCACCTCTCGCAATACGAGTTGATTTT
TTTACAACA
Found at i:99379568 original size:75 final size:74
Alignment explanation
Indices: 99379427--99379588 Score: 220
Period size: 73 Copynumber: 2.1 Consensus size: 74
99379417 TTGAAAAACG
* *
99379427 GAAATTGAAAATACCTCTGCGTGTGACCTGAGGCTCAACTCGCCTCTCGCAATACGAGTTGATTT
1 GAAATTGAAAATACCTCAGCGTGT-ACCTGAGGCTCAACTCACCTCTCGCAATACGAGTTGATTT
*
99379492 TTTTACAA-CA
65 TTTGA-AACCA
* *
99379502 GAAATTGAAATTACCTCAGCGTGT-CCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
1 GAAATTGAAAATACCTCAGCGTGTACCTGAGGCTCAACTCACCTCTCGCAATACGAGTTGA--TT
99379566 TTTTGAAAGCCA
64 TTTTGAAA-CCA
99379578 GAAATTGAAAA
1 GAAATTGAAAA
99379589 ACGGAAATTG
Statistics
Matches: 77, Mismatches: 6, Indels: 7
0.86 0.07 0.08
Matches are distributed among these distances:
73 34 0.44
74 2 0.03
75 29 0.38
76 12 0.16
ACGTcount: A:0.30, C:0.22, G:0.19, T:0.30
Consensus pattern (74 bp):
GAAATTGAAAATACCTCAGCGTGTACCTGAGGCTCAACTCACCTCTCGCAATACGAGTTGATTTT
TTGAAACCA
Found at i:99379671 original size:90 final size:89
Alignment explanation
Indices: 99379502--99379677 Score: 266
Period size: 92 Copynumber: 2.0 Consensus size: 89
99379492 TTTTACAACA
* *
99379502 GAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
1 GAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATACGAGTTGATTTTT
99379567 TTTGAAAGCCAGAAATTGAAAAACG
66 TTTGAAA-CCAGAAATTGAAAAACG
* *
99379592 GAAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCGCCTCTCGCAATACGAGTTGA-TT
1 GAAATTGAAAATACCTCAGCGTGT--CCTGAGGCTCAACTCACCTCTCGCAATACGAGTTGATTT
99379656 TTTTTGACAA-CAGAAATTGAAA
64 TTTTTGA-AACCAGAAATTGAAA
99379678 TTACCTCAGC
Statistics
Matches: 79, Mismatches: 4, Indels: 6
0.89 0.04 0.07
Matches are distributed among these distances:
90 34 0.43
91 9 0.11
92 36 0.46
ACGTcount: A:0.32, C:0.20, G:0.20, T:0.28
Consensus pattern (89 bp):
GAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATACGAGTTGATTTTT
TTTGAAACCAGAAATTGAAAAACG
Found at i:99379734 original size:76 final size:75
Alignment explanation
Indices: 99379592--99379736 Score: 238
Period size: 74 Copynumber: 1.9 Consensus size: 75
99379582 TTGAAAAACG
* *
99379592 GAAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCGCCTCTCGCAATACGAGTTGATTT
1 GAAATTGAAAATACCTCAGCGTGT-ACCTGAGGCTCAACTCACCTCTCGCAATACGAGTTGATTT
99379657 TTTTGACAACA
65 TTTTGACAACA
* *
99379668 GAAATTGAAATTACCTCAGCGTGT-CCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
1 GAAATTGAAAATACCTCAGCGTGTACCTGAGGCTCAACTCACCTCTCGCAATACGAGTTGATTTT
99379732 TTTGA
66 TTTGA
99379737 AAATACCTCA
Statistics
Matches: 65, Mismatches: 4, Indels: 2
0.92 0.06 0.03
Matches are distributed among these distances:
74 43 0.66
76 22 0.34
ACGTcount: A:0.27, C:0.23, G:0.20, T:0.30
Consensus pattern (75 bp):
GAAATTGAAAATACCTCAGCGTGTACCTGAGGCTCAACTCACCTCTCGCAATACGAGTTGATTTT
TTTGACAACA
Found at i:99379767 original size:61 final size:61
Alignment explanation
Indices: 99379672--99379793 Score: 217
Period size: 61 Copynumber: 2.0 Consensus size: 61
99379662 ACAACAGAAA
* *
99379672 TTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
1 TTGAAAATACCTCAGCGCGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
*
99379733 TTGAAAATACCTCAGCGCGTCCTGAGGCTCAACTCACCTTTCGCAATATGAGTTGATTTTT
1 TTGAAAATACCTCAGCGCGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
99379794 GAAACATACG
Statistics
Matches: 58, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
61 58 1.00
ACGTcount: A:0.24, C:0.25, G:0.18, T:0.34
Consensus pattern (61 bp):
TTGAAAATACCTCAGCGCGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
Found at i:99379842 original size:137 final size:136
Alignment explanation
Indices: 99379596--99379869 Score: 381
Period size: 137 Copynumber: 2.0 Consensus size: 136
99379586 AAAACGGAAA
* * * **
99379596 TTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCGCCTCTCGCAATACGAGTTGATTTTTTT
1 TTGAAAATACCTCAGCGCGT-ACCTGAGGCTCAACTCACCTCTCGCAATACGAGTTGATTTTTGA
* * * * *
99379661 GACAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
65 AACAACAAAAATTGAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAATT
*
99379726 GATTTTT
130 GAATTTT
* *
99379733 TTGAAAATACCTCAGCGCGT-CCTGAGGCTCAACTCACCTTTCGCAATATGAGTTGATTTTTGAA
1 TTGAAAATACCTCAGCGCGTACCTGAGGCTCAACTCACCTCTCGCAATACGAGTTGATTTTTGAA
99379797 ACATACGAAAAATT-AACAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAA
66 ACA-AC-AAAAATTGAA-AATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAA
99379861 TTGAATTTT
128 TTGAATTTT
99379870 GAAATAAAAC
Statistics
Matches: 121, Mismatches: 13, Indels: 6
0.86 0.09 0.04
Matches are distributed among these distances:
135 41 0.34
136 4 0.03
137 76 0.63
ACGTcount: A:0.28, C:0.24, G:0.18, T:0.30
Consensus pattern (136 bp):
TTGAAAATACCTCAGCGCGTACCTGAGGCTCAACTCACCTCTCGCAATACGAGTTGATTTTTGAA
ACAACAAAAATTGAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAATTG
AATTTT
Found at i:99395856 original size:64 final size:64
Alignment explanation
Indices: 99395776--99395998 Score: 367
Period size: 64 Copynumber: 3.5 Consensus size: 64
99395766 ACAAACTTAG
99395776 CTTTGTAATATAAATTATGTTATATAAATTAAATACATTACAACCATAATCTAATTGGAACAAA
1 CTTTGTAATATAAATTATGTTATATAAATTAAATACATTACAACCATAATCTAATTGGAACAAA
99395840 CTTTGTAATATAAATTATGTTATATAAATTAAATACATTACAACCATAATCTAATTGGAACAAA
1 CTTTGTAATATAAATTATGTTATATAAATTAAATACATTACAACCATAATCTAATTGGAACAAA
* * * *
99395904 CATTGTAATATAAATTTTTTTATATAAATTAAATGCATTACAA-CATTAATCTAATTGGAACAAA
1 CTTTGTAATATAAATTATGTTATATAAATTAAATACATTACAACCA-TAATCTAATTGGAACAAA
* * *
99395968 CTTTGTAATATAATTTTTTTTATATAAATTA
1 CTTTGTAATATAAATTATGTTATATAAATTA
99395999 CATAAACTCG
Statistics
Matches: 152, Mismatches: 6, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
63 2 0.01
64 150 0.99
ACGTcount: A:0.45, C:0.09, G:0.06, T:0.40
Consensus pattern (64 bp):
CTTTGTAATATAAATTATGTTATATAAATTAAATACATTACAACCATAATCTAATTGGAACAAA
Found at i:99398481 original size:22 final size:22
Alignment explanation
Indices: 99398455--99398502 Score: 69
Period size: 22 Copynumber: 2.2 Consensus size: 22
99398445 TTTACTCTAT
* *
99398455 AATTTCAATTGTACGAAGACTA
1 AATTTCAAATATACGAAGACTA
*
99398477 AATTTCAAATATATGAAGACTA
1 AATTTCAAATATACGAAGACTA
99398499 AATT
1 AATT
99398503 CCTGAATAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.46, C:0.10, G:0.10, T:0.33
Consensus pattern (22 bp):
AATTTCAAATATACGAAGACTA
Found at i:99401190 original size:21 final size:19
Alignment explanation
Indices: 99401166--99401221 Score: 60
Period size: 23 Copynumber: 2.8 Consensus size: 19
99401156 TTAACAAATA
99401166 TAAAAATTATAAAAAAATTCT
1 TAAAAATTATAAAAAAA--CT
*
99401187 TAAAGAATATATAAAAAAAGT
1 TAAA-AAT-TATAAAAAAACT
99401208 TAAAAATTA-AAAAA
1 TAAAAATTATAAAAA
99401222 TCTAGAAAAA
Statistics
Matches: 32, Mismatches: 1, Indels: 7
0.80 0.03 0.17
Matches are distributed among these distances:
18 5 0.16
19 2 0.06
20 3 0.09
21 9 0.28
22 3 0.09
23 10 0.31
ACGTcount: A:0.68, C:0.02, G:0.04, T:0.27
Consensus pattern (19 bp):
TAAAAATTATAAAAAAACT
Found at i:99404621 original size:23 final size:22
Alignment explanation
Indices: 99404595--99404638 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
99404585 TTGAAATGAA
99404595 AAATAAAATAAAATATT-TAAAAT
1 AAAT-AAATAAAA-ATTATAAAAT
*
99404618 AAATATATAAAAATTATAAAA
1 AAATAAATAAAAATTATAAAA
99404639 ATTATTTCAC
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
21 3 0.16
22 12 0.63
23 4 0.21
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (22 bp):
AAATAAATAAAAATTATAAAAT
Found at i:99404623 original size:13 final size:14
Alignment explanation
Indices: 99404597--99404629 Score: 50
Period size: 13 Copynumber: 2.4 Consensus size: 14
99404587 GAAATGAAAA
99404597 ATAAAATAAAATAT
1 ATAAAATAAAATAT
*
99404611 TTAAAAT-AAATAT
1 ATAAAATAAAATAT
99404624 ATAAAA
1 ATAAAA
99404630 ATTATAAAAA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
13 11 0.65
14 6 0.35
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (14 bp):
ATAAAATAAAATAT
Found at i:99406015 original size:20 final size:19
Alignment explanation
Indices: 99405971--99406016 Score: 65
Period size: 20 Copynumber: 2.3 Consensus size: 19
99405961 AAAATTACAA
99405971 AAAAATTCAAAATAATTTT
1 AAAAATTCAAAATAATTTT
99405990 CAAAAATTCAAAATATATATTT
1 -AAAAATTCAAAATA-AT-TTT
99406012 AAAAA
1 AAAAA
99406017 AATATATAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
20 14 0.58
21 7 0.29
22 3 0.12
ACGTcount: A:0.61, C:0.07, G:0.00, T:0.33
Consensus pattern (19 bp):
AAAAATTCAAAATAATTTT
Found at i:99406648 original size:2 final size:2
Alignment explanation
Indices: 99406641--99406674 Score: 59
Period size: 2 Copynumber: 17.0 Consensus size: 2
99406631 AGCATAAAGC
*
99406641 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GG GA GA
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
99406675 AGGAGAGGCT
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.47, C:0.00, G:0.53, T:0.00
Consensus pattern (2 bp):
GA
Found at i:99415892 original size:19 final size:19
Alignment explanation
Indices: 99415870--99415906 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
99415860 AATATGTAAT
*
99415870 TAGCTAATTACTATGGATA
1 TAGCTAATTACTAGGGATA
*
99415889 TAGCTGATTACTAGGGAT
1 TAGCTAATTACTAGGGAT
99415907 TTAATTTTAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.32, C:0.11, G:0.22, T:0.35
Consensus pattern (19 bp):
TAGCTAATTACTAGGGATA
Found at i:99433933 original size:24 final size:24
Alignment explanation
Indices: 99433901--99433961 Score: 79
Period size: 24 Copynumber: 2.5 Consensus size: 24
99433891 AACTGTATTT
* * *
99433901 GCACACATAGTGCTA-ATTACACTC
1 GCACACATAGTGCCATAGTAAAC-C
99433925 GCACACATAGTGCCATAGTAAACC
1 GCACACATAGTGCCATAGTAAACC
99433949 GCACACATAGTGC
1 GCACACATAGTGC
99433962 ATTGGATTTT
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
24 28 0.85
25 5 0.15
ACGTcount: A:0.34, C:0.30, G:0.16, T:0.20
Consensus pattern (24 bp):
GCACACATAGTGCCATAGTAAACC
Found at i:99453364 original size:39 final size:40
Alignment explanation
Indices: 99453269--99453491 Score: 273
Period size: 39 Copynumber: 5.7 Consensus size: 40
99453259 TTGAATGATG
*
99453269 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTA-AGTGAC-AAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAAT
*
99453307 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTAAT
99453348 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* *
99453387 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* *
99453426 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* *
99453465 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
99453492 AACGAGGAGC
Statistics
Matches: 166, Mismatches: 10, Indels: 15
0.87 0.05 0.08
Matches are distributed among these distances:
39 93 0.56
40 61 0.37
41 11 0.07
42 1 0.01
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
Found at i:99453455 original size:79 final size:81
Alignment explanation
Indices: 99453269--99453491 Score: 282
Period size: 79 Copynumber: 2.8 Consensus size: 81
99453259 TTGAATGATG
* * *
99453269 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTA-AGTGAC-AATATCCGGACTAAGATCCGAAGGCA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAATATCCGGGCTAAGACCCGAAGGCA
*
99453330 TTTGTGCGAGATACTAAT
64 TTTGTGCGAGATACTAAA
99453348 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT-TCCGGGCTAAG-CCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAATATCCGGGCTAAGACCCGAAGGCATT
*
99453410 TGTGCGAGTTACTAAA
66 TGTGCGAGATACTAAA
* * * * *
99453426 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAATATCCGGGCTAAGACCCGAAGGCATT
99453490 TG
66 TG
99453492 AACGAGGAGC
Statistics
Matches: 128, Mismatches: 9, Indels: 13
0.85 0.06 0.09
Matches are distributed among these distances:
78 46 0.36
79 56 0.44
80 25 0.20
81 1 0.01
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAATATCCGGGCTAAGACCCGAAGGCATT
TGTGCGAGATACTAAA
Found at i:99453513 original size:79 final size:79
Alignment explanation
Indices: 99453269--99453524 Score: 224
Period size: 79 Copynumber: 3.3 Consensus size: 79
99453259 TTGAATGATG
* * * *
99453269 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTA-AGTGAC-AATATCCGGACTAAGATCCGAAGGCA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAATA-CCGGGCTAAG-CCCGAAGGCA
** *
99453330 TTTGTGCGAGAT-ACTAAT
62 TTTGAACGAG-TGACTAAA
* *
99453348 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTG
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTG
** *
99453412 TGCGAGTTACTAAA
66 AACGAGTGACTAAA
* *
99453426 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATT
*
99453490 TGAACGAG-GAGCTATA
64 TGAACGAGTGA-CTAAA
* *
99453506 TCC-GGTTAAATTCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
99453525 TACGTGATTT
Statistics
Matches: 153, Mismatches: 15, Indels: 18
0.82 0.08 0.10
Matches are distributed among these distances:
77 1 0.01
78 45 0.29
79 70 0.46
80 36 0.24
81 1 0.01
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.24
Consensus pattern (79 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTG
AACGAGTGACTAAA
Found at i:99461393 original size:79 final size:81
Alignment explanation
Indices: 99461257--99461441 Score: 236
Period size: 79 Copynumber: 2.3 Consensus size: 81
99461247 TTGAATGATG
*
99461257 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
99461321 TGTGCGAGATACTA-A
66 TGTGCGAGATACTATA
* * * **
99461336 TTCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
*
99461398 TTTGTGCGAGTTACTATA
64 TTTGTGCGAGATACTATA
* *
99461416 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
99461442 AACGAGTAGC
Statistics
Matches: 92, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 1 0.01
79 58 0.63
80 33 0.36
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGATACTATA
Found at i:99461455 original size:40 final size:40
Alignment explanation
Indices: 99461258--99461441 Score: 216
Period size: 40 Copynumber: 4.6 Consensus size: 40
99461248 TGAATGATGT
* * * *
99461258 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* * *
99461298 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-A
99461338 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
99461376 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
99461417 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
99461442 AACGAGTAGC
Statistics
Matches: 126, Mismatches: 11, Indels: 14
0.83 0.07 0.09
Matches are distributed among these distances:
39 35 0.28
40 81 0.64
41 10 0.08
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:99461463 original size:79 final size:79
Alignment explanation
Indices: 99461310--99461474 Score: 210
Period size: 79 Copynumber: 2.1 Consensus size: 79
99461300 GGACTAAGAT
* **
99461310 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
*
99461375 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* *
99461389 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTTA-C
* *
99461452 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
99461468 CCGAAGG
1 CCGAAGG
99461475 TACGTGATTT
Statistics
Matches: 75, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
78 2 0.03
79 48 0.64
80 25 0.33
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:99469940 original size:13 final size:13
Alignment explanation
Indices: 99469922--99469946 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
99469912 GTTTTCACAC
99469922 GCCCGTGTCCCTA
1 GCCCGTGTCCCTA
99469935 GCCCGTGTCCCT
1 GCCCGTGTCCCT
99469947 TACACGGCCT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.04, C:0.48, G:0.24, T:0.24
Consensus pattern (13 bp):
GCCCGTGTCCCTA
Found at i:99479846 original size:33 final size:33
Alignment explanation
Indices: 99479804--99479872 Score: 102
Period size: 33 Copynumber: 2.1 Consensus size: 33
99479794 ATTCAATATT
* *
99479804 AGTACAGTCTGGGCCTTAGCCCTATACAGTATC
1 AGTACAGTCTGGGCCATAGCCCTATACAGTAAC
* *
99479837 AGTATAGTCTGGGCCATGGCCCTATACAGTAAC
1 AGTACAGTCTGGGCCATAGCCCTATACAGTAAC
99479870 AGT
1 AGT
99479873 GTGGGCCTAA
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
33 32 1.00
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (33 bp):
AGTACAGTCTGGGCCATAGCCCTATACAGTAAC
Found at i:99480281 original size:27 final size:27
Alignment explanation
Indices: 99480251--99480422 Score: 195
Period size: 27 Copynumber: 6.4 Consensus size: 27
99480241 GGGCATAATT
*
99480251 ATCATTTTACCCCATAGGGGCATTACG
1 ATCATTTTACCCTATAGGGGCATTACG
*
99480278 ATCATTTTACCCTATAGGGGTATTACG
1 ATCATTTTACCCTATAGGGGCATTACG
*
99480305 GTCATTTTACCCTATAGGGGCATTAC-
1 ATCATTTTACCCTATAGGGGCATTACG
* * *
99480331 AGTCATTTTACCCTACAAGGGTATTACG
1 A-TCATTTTACCCTATAGGGGCATTACG
* * *
99480359 GTCATTTTACCCTACAGAGGCATTACG
1 ATCATTTTACCCTATAGGGGCATTACG
* * *
99480386 ATCATTTTACTCT-TCATGGGTATTACG
1 ATCATTTTACCCTAT-AGGGGCATTACG
*
99480413 GTCATTTTAC
1 ATCATTTTAC
99480423 AAACCAGGGT
Statistics
Matches: 123, Mismatches: 19, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
27 123 1.00
ACGTcount: A:0.25, C:0.22, G:0.17, T:0.35
Consensus pattern (27 bp):
ATCATTTTACCCTATAGGGGCATTACG
Found at i:99480337 original size:54 final size:54
Alignment explanation
Indices: 99480252--99480422 Score: 247
Period size: 54 Copynumber: 3.2 Consensus size: 54
99480242 GGCATAATTA
* *
99480252 TCATTTTACCCCATAGGGGCATTACGATCATTTTACCCTATAGGGGTATTACGG
1 TCATTTTACCCTATAGGGGCATTACGATCATTTTACCCTATAAGGGTATTACGG
*
99480306 TCATTTTACCCTATAGGGGCATTAC-AGTCATTTTACCCTACAAGGGTATTACGG
1 TCATTTTACCCTATAGGGGCATTACGA-TCATTTTACCCTATAAGGGTATTACGG
* * * *
99480360 TCATTTTACCCTACAGAGGCATTACGATCATTTTACTCT-TCATGGGTATTACGG
1 TCATTTTACCCTATAGGGGCATTACGATCATTTTACCCTAT-AAGGGTATTACGG
99480414 TCATTTTAC
1 TCATTTTAC
99480423 AAACCAGGGT
Statistics
Matches: 106, Mismatches: 8, Indels: 6
0.88 0.07 0.05
Matches are distributed among these distances:
53 1 0.01
54 104 0.98
55 1 0.01
ACGTcount: A:0.25, C:0.22, G:0.18, T:0.36
Consensus pattern (54 bp):
TCATTTTACCCTATAGGGGCATTACGATCATTTTACCCTATAAGGGTATTACGG
Found at i:99480680 original size:19 final size:17
Alignment explanation
Indices: 99480640--99480682 Score: 50
Period size: 17 Copynumber: 2.4 Consensus size: 17
99480630 TTATTCATGT
* *
99480640 GGGCCCACAAGCCTATT
1 GGGCCCACAAGCCCATC
99480657 GGGCCCACACAGCCCATC
1 GGGCCCACA-AGCCCATC
99480675 GAGGCCCA
1 G-GGCCCA
99480683 AAACATCCTA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
17 9 0.41
18 7 0.32
19 6 0.27
ACGTcount: A:0.23, C:0.42, G:0.26, T:0.09
Consensus pattern (17 bp):
GGGCCCACAAGCCCATC
Found at i:99484791 original size:68 final size:68
Alignment explanation
Indices: 99484644--99484799 Score: 156
Period size: 68 Copynumber: 2.2 Consensus size: 68
99484634 AGCCGATTTG
* * * * *
99484644 TCTCGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATT
1 TCTCGTAGCTCTCTTGTCTACATGGTGTACATCAC-TCGAATCACACATGCGACCTAGCTACATA
*
99484709 TATC
65 TATA
* *
99484713 TCTCACGTAGCTCTCTTGTCTACATGG-GATACATC-C-CGTATCACACATGTGACCTAGCTACT
1 TCT--CGTAGCTCTCTTGTCTACATGGTG-TACATCACTCGAATCACACATGCGACCTAGCTAC-
99484775 ATATAGTA
62 ATATA-TA
*
99484783 TCTCGTAGCTTTCTTGT
1 TCTCGTAGCTCTCTTGT
99484800 ACACATGATG
Statistics
Matches: 73, Mismatches: 9, Indels: 11
0.78 0.10 0.12
Matches are distributed among these distances:
68 34 0.47
69 7 0.10
70 6 0.08
71 26 0.36
ACGTcount: A:0.21, C:0.28, G:0.17, T:0.35
Consensus pattern (68 bp):
TCTCGTAGCTCTCTTGTCTACATGGTGTACATCACTCGAATCACACATGCGACCTAGCTACATAT
ATA
Found at i:99500202 original size:10 final size:10
Alignment explanation
Indices: 99500187--99500248 Score: 52
Period size: 10 Copynumber: 5.9 Consensus size: 10
99500177 TTTGAACCAT
*
99500187 TACCAATTCG
1 TACCAATTCA
*
99500197 TACCAAATACCA
1 TACC-AAT-TCA
*
99500209 TACCATTTCA
1 TACCAATTCA
99500219 TACCAATTCCA
1 TACCAATT-CA
* *
99500230 TACCATTTCG
1 TACCAATTCA
99500240 TACCAATTC
1 TACCAATTC
99500249 CCAAATACAC
Statistics
Matches: 41, Mismatches: 8, Indels: 6
0.75 0.15 0.11
Matches are distributed among these distances:
10 22 0.54
11 14 0.34
12 5 0.12
ACGTcount: A:0.34, C:0.32, G:0.03, T:0.31
Consensus pattern (10 bp):
TACCAATTCA
Found at i:99500232 original size:21 final size:21
Alignment explanation
Indices: 99500187--99500249 Score: 90
Period size: 21 Copynumber: 3.0 Consensus size: 21
99500177 TTTGAACCAT
* *
99500187 TACCAATTCGTACCAAATACCA
1 TACCATTTCGTACC-AATTCCA
*
99500209 TACCATTTCATACCAATTCCA
1 TACCATTTCGTACCAATTCCA
99500230 TACCATTTCGTACCAATTCC
1 TACCATTTCGTACCAATTCC
99500250 CAAATACACA
Statistics
Matches: 37, Mismatches: 4, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
21 25 0.68
22 12 0.32
ACGTcount: A:0.33, C:0.33, G:0.03, T:0.30
Consensus pattern (21 bp):
TACCATTTCGTACCAATTCCA
Found at i:99513737 original size:364 final size:364
Alignment explanation
Indices: 99513068--99513797 Score: 1343
Period size: 364 Copynumber: 2.0 Consensus size: 364
99513058 TTCCATGCTA
*
99513068 AGGCGTTATCGCTCTAGTCCTACGCATATTATCTCGACTAAGGAAATGAAGGTTGGATCAGATAT
1 AGGCGTTATCGCTCTAGTCCTACGCATATTATCTCGACTAAGAAAATGAAGGTTGGATCAGATAT
99513133 TACTTTCAAGGAGGAGCTAATTCAAATTTTAGATCGTGATATGGAAGTCTTGAGGAAAAATTCTA
66 TACTTTCAAGGAGGAGCTAATTCAAATTTTAGATCGTGATATGGAAGTCTTGAGGAAAAATTCTA
*
99513198 TCCCACTGGTTAAAGTACTTTAGCGTAATCACAGTTCTGAGGATGCCACGTGGGAAACTGAGGAG
131 TCCCACTGGTTAAAGTACTTTAGCGTAATAACAGTTCTGAGGATGCCACGTGGGAAACTGAGGAG
*
99513263 GCAATGTGACAACAATACCCTCATCTGTTTTGATAGGTAAATTTCAATGCCAAAATTTTCTTTTA
196 GCAATGCGACAACAATACCCTCATCTGTTTTGATAGGTAAATTTCAATGCCAAAATTTTCTTTTA
99513328 GGTGGGTAGAGTTCTAACGCCCCAAAAATGTAGTAATTATTTTTGTGTGTTGTGTTACACAACTC
261 GGTGGGTAGAGTTCTAACGCCCCAAAAATGTAGTAATTATTTTTGTGTGTTGTGTTACACAACTC
*
99513393 TGTATCTACTTCAGTGGTTATGTGTTCTGGGAGTGTCTG
326 TGTATCTACGTCAGTGGTTATGTGTTCTGGGAGTGTCTG
* * *
99513432 AGGCGTTATCGCTCTAGTCCTACGCATATTATCTCGACTGAGAAAATTAAGGTTGGATCAGATCT
1 AGGCGTTATCGCTCTAGTCCTACGCATATTATCTCGACTAAGAAAATGAAGGTTGGATCAGATAT
99513497 TACTTTCAAGGAGGAGCTAATTCAAATTTTAGATCGTGATATGGAAGTCTTGAGGAAAAATTCTA
66 TACTTTCAAGGAGGAGCTAATTCAAATTTTAGATCGTGATATGGAAGTCTTGAGGAAAAATTCTA
*
99513562 TCCCACTGGTTAAATTACTTTAGCGTAATAACAGTTCTGAGGATGCCACGTGGGAAACTGAGGAG
131 TCCCACTGGTTAAAGTACTTTAGCGTAATAACAGTTCTGAGGATGCCACGTGGGAAACTGAGGAG
* *
99513627 GCAATGCGACAACAATACCCTCATCTGTTTTGATAGGTAAATTTCGATGTCAAAATTTTCTTTTA
196 GCAATGCGACAACAATACCCTCATCTGTTTTGATAGGTAAATTTCAATGCCAAAATTTTCTTTTA
* *
99513692 GGTGGGTAGAGTTCTAACGCCCCAAAAATTTAGTAATTATTTTTGTGTGTTGTGTTACACAACTG
261 GGTGGGTAGAGTTCTAACGCCCCAAAAATGTAGTAATTATTTTTGTGTGTTGTGTTACACAACTC
*
99513757 TGTATCTGCGTCAGTGGTTATGTGTTCTGGGAGTGTCTG
326 TGTATCTACGTCAGTGGTTATGTGTTCTGGGAGTGTCTG
99513796 AG
1 AG
99513798 AAGTCCTAGG
Statistics
Matches: 353, Mismatches: 13, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
364 353 1.00
ACGTcount: A:0.28, C:0.16, G:0.23, T:0.33
Consensus pattern (364 bp):
AGGCGTTATCGCTCTAGTCCTACGCATATTATCTCGACTAAGAAAATGAAGGTTGGATCAGATAT
TACTTTCAAGGAGGAGCTAATTCAAATTTTAGATCGTGATATGGAAGTCTTGAGGAAAAATTCTA
TCCCACTGGTTAAAGTACTTTAGCGTAATAACAGTTCTGAGGATGCCACGTGGGAAACTGAGGAG
GCAATGCGACAACAATACCCTCATCTGTTTTGATAGGTAAATTTCAATGCCAAAATTTTCTTTTA
GGTGGGTAGAGTTCTAACGCCCCAAAAATGTAGTAATTATTTTTGTGTGTTGTGTTACACAACTC
TGTATCTACGTCAGTGGTTATGTGTTCTGGGAGTGTCTG
Found at i:99519948 original size:99 final size:98
Alignment explanation
Indices: 99519777--99519973 Score: 322
Period size: 99 Copynumber: 2.0 Consensus size: 98
99519767 AGTAGAACCA
* *
99519777 GGGTCAATCAAAGTAATCACATTAGTATCAAAGAGAGTGAAAGTACCGGTAATAACATCAGGCGA
1 GGGTCAATCAAAGCAATCACATTAGTATCAAAGAGAGTGAAAGTACCAGTAATAACATCAGGCGA
*
99519842 ATAAGCATCCTCGCGTGCACGTATAGCATAAGC
66 AGAAGCATCCTCGCGTGCACGTATAGCATAAGC
* *
99519875 NGGGTCAATCAATGCAATCACATTAGTATCAAAGAGAGTGAAAGTACCAGTAATAACATCTGGCG
1 -GGGTCAATCAAAGCAATCACATTAGTATCAAAGAGAGTGAAAGTACCAGTAATAACATCAGGCG
* *
99519940 AGGAAGCATCCTCTCGTGCACGTATAGCATAAGC
65 AAGAAGCATCCTCGCGTGCACGTATAGCATAAGC
99519974 TCTAGCAGGA
Statistics
Matches: 91, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
99 91 1.00
ACGTcount: A:0.37, C:0.20, G:0.22, T:0.21
Consensus pattern (98 bp):
GGGTCAATCAAAGCAATCACATTAGTATCAAAGAGAGTGAAAGTACCAGTAATAACATCAGGCGA
AGAAGCATCCTCGCGTGCACGTATAGCATAAGC
Found at i:99520177 original size:95 final size:95
Alignment explanation
Indices: 99520014--99520199 Score: 282
Period size: 95 Copynumber: 2.0 Consensus size: 95
99520004 TGTAGCGTCT
* * * * * *
99520014 CTAGATCCTCTCTGACCGCCACTAGGATTTCCCGCATTTCTGGACGGTCTACCTCGAGCAGTAGT
1 CTAGATCCTCTCTGACCGCCACTAGCATTGCCCACATTTCTAGACGGTCTACCCCGAGCAGCAGT
*
99520079 AGCACCTGATTTCCCACTCTGATTTATATC
66 AGCACCTGATTTCCCACTCTAATTTATATC
**
99520109 CTAGATCCTCTCTGACCGCCACTAGCATTGCCCATGTTTCTAGACGGTCTACCCCGAGCAGCAGT
1 CTAGATCCTCTCTGACCGCCACTAGCATTGCCCACATTTCTAGACGGTCTACCCCGAGCAGCAGT
*
99520174 AGCACCTGGTTTCCCACTCTAATTTA
66 AGCACCTGATTTCCCACTCTAATTTA
99520200 CATTTTGTTC
Statistics
Matches: 81, Mismatches: 10, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
95 81 1.00
ACGTcount: A:0.20, C:0.33, G:0.18, T:0.29
Consensus pattern (95 bp):
CTAGATCCTCTCTGACCGCCACTAGCATTGCCCACATTTCTAGACGGTCTACCCCGAGCAGCAGT
AGCACCTGATTTCCCACTCTAATTTATATC
Found at i:99522971 original size:40 final size:40
Alignment explanation
Indices: 99522799--99522976 Score: 259
Period size: 40 Copynumber: 4.5 Consensus size: 40
99522789 AACCCAAGTA
* * *
99522799 CCTTCGGGATTTAG-CCGGAGATAGCAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
99522838 CCTTCGGAACTTAGCCCGGATATAGTAACTCGTACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
99522878 CCTTCGGAACTTAGCACGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
99522918 CCTTCGAGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
99522958 CCTTCGGGTCTTAGTCCGG
1 CCTTCGGGACTTAGCCCGG
99522977 TTATCATCCG
Statistics
Matches: 125, Mismatches: 13, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
39 12 0.10
40 113 0.90
ACGTcount: A:0.28, C:0.26, G:0.22, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:99535102 original size:16 final size:16
Alignment explanation
Indices: 99535083--99535114 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
99535073 AATTATTTTA
99535083 TTACAAAATTTCACTT
1 TTACAAAATTTCACTT
*
99535099 TTACATAATTTCACTT
1 TTACAAAATTTCACTT
99535115 ACTCCATTCT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.34, C:0.19, G:0.00, T:0.47
Consensus pattern (16 bp):
TTACAAAATTTCACTT
Found at i:99535379 original size:50 final size:50
Alignment explanation
Indices: 99535314--99535809 Score: 419
Period size: 50 Copynumber: 9.9 Consensus size: 50
99535304 ACCGAAGCTC
** * *
99535314 TCTGGTATGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAA
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCTATCAA
* ** * * * * * * * *
99535364 TCTGGTACACGTAGTAGTATGTACTTAATAATACACATGTAACTTAACCA
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCTATCAA
* * * * ** *
99535414 TCTGATGCACGTAGTAGCGTGCACTTAGTACTACACACGTGATCAAAGTTAA
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGA-CCTA-TCAA
* * * *
99535466 -CAGGTACGCATAGTAGCCTGCACTTAGTACTGCACATGTGACCTATCAA
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCTATCAA
* * * *
99535515 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACTTAACCA
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCTATCAA
* * * * *
99535565 TCTGGTACACATAGTAGCTTGCATTTAGTACTACACACATGATCCAAGTTAA
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGA-CCTA-TCAA
* * * *
99535617 --TGGATACCCATAGTAGCCTGCACTTAGTACTACACACGTGACTTAACCA
1 TCTGG-TACACATAGTAGCCTGCACTTAGTACTACACACGTGACCTATCAA
* ** * * *
99535666 TCTGATACATGTAGTAGCTTGCACTTAGTACTACACACGTGATCCAAGTTAA
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGA-CCTA-TCAA
* * *
99535718 --TGGATACCCATAGTAGCCTGCACTTAGTACT-CTACATGCGACCTATCAA
1 TCTGG-TACACATAGTAGCCTGCACTTAGTACTAC-ACACGTGACCTATCAA
* *
99535767 TCTGATACACATAGTAGCCTACACTTAGTACTACACACGTGAC
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGAC
99535810 TCATAATGGA
Statistics
Matches: 343, Mismatches: 88, Indels: 30
0.74 0.19 0.07
Matches are distributed among these distances:
49 7 0.02
50 227 0.66
51 106 0.31
52 3 0.01
ACGTcount: A:0.31, C:0.25, G:0.17, T:0.28
Consensus pattern (50 bp):
TCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCTATCAA
Found at i:99535596 original size:151 final size:150
Alignment explanation
Indices: 99535317--99535707 Score: 530
Period size: 151 Copynumber: 2.6 Consensus size: 150
99535307 GAAGCTCTCT
* * *
99535317 GGTATGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACGTAGTAGT
1 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGTGACCTATCAATCTGGTACACGTAGTAGC
* * * * * * *
99535382 ATGTACTTAATAATACACATGTAACTTAACCATCTGATGCACGTAGTAGCGTGCACTTAGTACTA
66 ATGCACTTAGTACTACACACGTGACTTAACCATCTGATACACATAGTAGCGTGCACTTAGTACTA
*
99535447 CACACGTGATCAAAGTTAACA
131 CACACATGATCAAAGTTAA-A
*
99535468 GGTACGCATAGTAGCCTGCACTTAGTACTGCACATGTGACCTATCAATCTGGTACACGTAGTAGC
1 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGTGACCTATCAATCTGGTACACGTAGTAGC
* * * *
99535533 CTGCACTTAGTACTACACACGTGACTTAACCATCTGGTACACATAGTAGCTTGCATTTAGTACTA
66 ATGCACTTAGTACTACACACGTGACTTAACCATCTGATACACATAGTAGCGTGCACTTAGTACTA
* *
99535598 CACACATGATCCAAGTTAAT
131 CACACATGATCAAAGTTAAA
* * * * * * *
99535618 GGATACCCATAGTAGCCTGCACTTAGTACTACACACGTGACTTAACCATCTGATACATGTAGTAG
1 GG-TACGCATAGTAGCCTGCACTTAGTACTACACATGTGACCTATCAATCTGGTACACGTAGTAG
*
99535683 CTTGCACTTAGTACTACACACGTGA
65 CATGCACTTAGTACTACACACGTGA
99535708 TCCAAGTTAA
Statistics
Matches: 212, Mismatches: 27, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
150 2 0.01
151 210 0.99
ACGTcount: A:0.31, C:0.24, G:0.18, T:0.28
Consensus pattern (150 bp):
GGTACGCATAGTAGCCTGCACTTAGTACTACACATGTGACCTATCAATCTGGTACACGTAGTAGC
ATGCACTTAGTACTACACACGTGACTTAACCATCTGATACACATAGTAGCGTGCACTTAGTACTA
CACACATGATCAAAGTTAAA
Found at i:99535774 original size:151 final size:151
Alignment explanation
Indices: 99535323--99535810 Score: 468
Period size: 151 Copynumber: 3.2 Consensus size: 151
99535313 CTCTGGTATG
* * * * * ** *
99535323 CATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACGTAGTAGTATGTAC
1 CATAGTAGCCTGCACTTAGTACTACACACGTGACTTAACAATCTGATACACGTAGTAGCCTGCAC
* * * * * * * * * * *
99535388 TTAATAATACACATGTAACTTAACCATCTGATGCACGTAGTAGCGTGCACTTAGTACTACACACG
66 TTAGTACTACACACGTGACTCAACCATATGGTACACATAGTAGCCTGCACTTAGTACTACACACA
* * * *
99535453 TGATCAAAGTTAACAGG-TACG
131 TGATCCAAGTCAA-TGGATACA
* * * * *
99535474 CATAGTAGCCTGCACTTAGTACTGCACATGTGACCTATCAATCTGGTACACGTAGTAGCCTGCAC
1 CATAGTAGCCTGCACTTAGTACTACACACGTGACTTAACAATCTGATACACGTAGTAGCCTGCAC
* * * *
99535539 TTAGTACTACACACGTGACTTAACCATCTGGTACACATAGTAGCTTGCATTTAGTACTACACACA
66 TTAGTACTACACACGTGACTCAACCATATGGTACACATAGTAGCCTGCACTTAGTACTACACACA
* *
99535604 TGATCCAAGTTAATGGATACC
131 TGATCCAAGTCAATGGATACA
* * *
99535625 CATAGTAGCCTGCACTTAGTACTACACACGTGACTTAACCATCTGATACATGTAGTAGCTTGCAC
1 CATAGTAGCCTGCACTTAGTACTACACACGTGACTTAACAATCTGATACACGTAGTAGCCTGCAC
** * *
99535690 TTAGTACTACACACGTGA-TCCAA-GTTAATGGATACCCATAGTAGCCTGCACTTAGTACT-C-T
66 TTAGTACTACACACGTGACT-CAACCAT-ATGG-TACACATAGTAGCCTGCACTTAGTACTACAC
* *
99535751 ACATGCGA-CCTA-TCAATCTGATACA
128 ACAT--GATCCAAGTCAAT-GGATACA
*
99535776 CATAGTAGCCTACACTTAGTACTACACACGTGACT
1 CATAGTAGCCTGCACTTAGTACTACACACGTGACT
99535811 CATAATGGAT
Statistics
Matches: 291, Mismatches: 39, Indels: 14
0.85 0.11 0.04
Matches are distributed among these distances:
150 12 0.04
151 253 0.87
152 26 0.09
ACGTcount: A:0.31, C:0.25, G:0.17, T:0.27
Consensus pattern (151 bp):
CATAGTAGCCTGCACTTAGTACTACACACGTGACTTAACAATCTGATACACGTAGTAGCCTGCAC
TTAGTACTACACACGTGACTCAACCATATGGTACACATAGTAGCCTGCACTTAGTACTACACACA
TGATCCAAGTCAATGGATACA
Found at i:99535805 original size:101 final size:101
Alignment explanation
Indices: 99535425--99535808 Score: 445
Period size: 101 Copynumber: 3.8 Consensus size: 101
99535415 CTGATGCACG
* * ** * * * *
99535425 TAGTAGCGTGCACTTAGTACTACACACGTGA-TCAAAGTTAACAGGTACGCATAGTAGCCTGCAC
1 TAGTAGCCTGCACTTAGTACTACACACGTGACT-TAA-CCATCTGATACACATAGTAGCCTGCAC
* * * * * *
99535489 TTAGTACTGCACATGTGA-CCTA-TCAATCTGG-TACACG
64 TTAGTACTACACACGTGATCCAAGTTAA--TGGATACCCA
* * *
99535526 TAGTAGCCTGCACTTAGTACTACACACGTGACTTAACCATCTGGTACACATAGTAGCTTGCATTT
1 TAGTAGCCTGCACTTAGTACTACACACGTGACTTAACCATCTGATACACATAGTAGCCTGCACTT
*
99535591 AGTACTACACACATGATCCAAGTTAATGGATACCCA
66 AGTACTACACACGTGATCCAAGTTAATGGATACCCA
** *
99535627 TAGTAGCCTGCACTTAGTACTACACACGTGACTTAACCATCTGATACATGTAGTAGCTTGCACTT
1 TAGTAGCCTGCACTTAGTACTACACACGTGACTTAACCATCTGATACACATAGTAGCCTGCACTT
99535692 AGTACTACACACGTGATCCAAGTTAATGGATACCCA
66 AGTACTACACACGTGATCCAAGTTAATGGATACCCA
* * * * * *
99535728 TAGTAGCCTGCACTTAGTACT-CTACATGCGACCTATCAATCTGATACACATAGTAGCCTACACT
1 TAGTAGCCTGCACTTAGTACTAC-ACACGTGACTTAACCATCTGATACACATAGTAGCCTGCACT
99535792 TAGTACTACACACGTGA
65 TAGTACTACACACGTGA
99535809 CTCATAATGG
Statistics
Matches: 248, Mismatches: 30, Indels: 10
0.86 0.10 0.03
Matches are distributed among these distances:
100 39 0.16
101 205 0.83
102 4 0.02
ACGTcount: A:0.31, C:0.25, G:0.17, T:0.27
Consensus pattern (101 bp):
TAGTAGCCTGCACTTAGTACTACACACGTGACTTAACCATCTGATACACATAGTAGCCTGCACTT
AGTACTACACACGTGATCCAAGTTAATGGATACCCA
Found at i:99550331 original size:12 final size:12
Alignment explanation
Indices: 99550314--99550338 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
99550304 TTTTAAATGA
99550314 ATTTGATTAAAT
1 ATTTGATTAAAT
99550326 ATTTGATTAAAT
1 ATTTGATTAAAT
99550338 A
1 A
99550339 AGTTTAATTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.44, C:0.00, G:0.08, T:0.48
Consensus pattern (12 bp):
ATTTGATTAAAT
Found at i:99551292 original size:104 final size:104
Alignment explanation
Indices: 99551183--99551391 Score: 409
Period size: 104 Copynumber: 2.0 Consensus size: 104
99551173 GAGAACTTGT
99551183 TCTATAAAAGTATATGCTATATATGTATGGAATTAAAAGCTTGAAATTATATATGATTACAAATG
1 TCTATAAAAGTATATGCTATATATGTATGGAATTAAAAGCTTGAAATTATATATGATTACAAATG
*
99551248 TATAAGTTGATTTATTTAATTGAAATGATTTAGTAATTG
66 TATAAGTTGATTTATTTAATTAAAATGATTTAGTAATTG
99551287 TCTATAAAAGTATATGCTATATATGTATGGAATTAAAAGCTTGAAATTATATATGATTACAAATG
1 TCTATAAAAGTATATGCTATATATGTATGGAATTAAAAGCTTGAAATTATATATGATTACAAATG
99551352 TATAAGTTGATTTATTTAATTAAAATGATTTAGTAATTG
66 TATAAGTTGATTTATTTAATTAAAATGATTTAGTAATTG
99551391 T
1 T
99551392 GATGTTATTA
Statistics
Matches: 104, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
104 104 1.00
ACGTcount: A:0.41, C:0.04, G:0.14, T:0.42
Consensus pattern (104 bp):
TCTATAAAAGTATATGCTATATATGTATGGAATTAAAAGCTTGAAATTATATATGATTACAAATG
TATAAGTTGATTTATTTAATTAAAATGATTTAGTAATTG
Found at i:99551500 original size:30 final size:31
Alignment explanation
Indices: 99551443--99551506 Score: 94
Period size: 34 Copynumber: 2.0 Consensus size: 31
99551433 CTAAGCTAAG
99551443 TTAGCTTACTTTGTATATGTTTTTTTTTTATATA
1 TTAGCTTACTTTGTATA---TTTTTTTTTATATA
99551477 TTAGCTTACTTTGTATA-TTTTTTTTATATA
1 TTAGCTTACTTTGTATATTTTTTTTTATATA
99551507 ATTGTTTTTT
Statistics
Matches: 30, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
30 13 0.43
34 17 0.57
ACGTcount: A:0.22, C:0.06, G:0.08, T:0.64
Consensus pattern (31 bp):
TTAGCTTACTTTGTATATTTTTTTTTATATA
Found at i:99554508 original size:12 final size:15
Alignment explanation
Indices: 99554476--99554509 Score: 68
Period size: 15 Copynumber: 2.3 Consensus size: 15
99554466 GAGTAAATTA
99554476 ATGATGTTAATGAAG
1 ATGATGTTAATGAAG
99554491 ATGATGTTAATGAAG
1 ATGATGTTAATGAAG
99554506 ATGA
1 ATGA
99554510 CAAGGCCAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.41, C:0.00, G:0.26, T:0.32
Consensus pattern (15 bp):
ATGATGTTAATGAAG
Found at i:99557409 original size:18 final size:18
Alignment explanation
Indices: 99557388--99557423 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
99557378 CATGGAGTGT
*
99557388 ATGGCTGGTACGGAGCAA
1 ATGGCTGGTAAGGAGCAA
99557406 ATGGCTGGTAAGGAGCAA
1 ATGGCTGGTAAGGAGCAA
99557424 TGTAGCGGTT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.31, C:0.14, G:0.39, T:0.17
Consensus pattern (18 bp):
ATGGCTGGTAAGGAGCAA
Found at i:99564874 original size:59 final size:59
Alignment explanation
Indices: 99564782--99564899 Score: 227
Period size: 59 Copynumber: 2.0 Consensus size: 59
99564772 AGTTCAATTC
99564782 GGCAAAAGCCAAAATGCTGAAACTCCGGCATTTCATAGGCTTGTGAGTATGCGAATGCT
1 GGCAAAAGCCAAAATGCTGAAACTCCGGCATTTCATAGGCTTGTGAGTATGCGAATGCT
*
99564841 GGCAAAAGCCGAAATGCTGAAACTCCGGCATTTCATAGGCTTGTGAGTATGCGAATGCT
1 GGCAAAAGCCAAAATGCTGAAACTCCGGCATTTCATAGGCTTGTGAGTATGCGAATGCT
99564900 CTCAAGACAT
Statistics
Matches: 58, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
59 58 1.00
ACGTcount: A:0.30, C:0.20, G:0.26, T:0.24
Consensus pattern (59 bp):
GGCAAAAGCCAAAATGCTGAAACTCCGGCATTTCATAGGCTTGTGAGTATGCGAATGCT
Found at i:99574670 original size:14 final size:14
Alignment explanation
Indices: 99574653--99574680 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
99574643 AAAAAAAGTT
99574653 AATCAAAACAATGA
1 AATCAAAACAATGA
99574667 AATCAAAACAATGA
1 AATCAAAACAATGA
99574681 TAACGTATAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.64, C:0.14, G:0.07, T:0.14
Consensus pattern (14 bp):
AATCAAAACAATGA
Found at i:99577587 original size:20 final size:21
Alignment explanation
Indices: 99577549--99577587 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
99577539 ATCCCCAAAG
99577549 CAAAAGATCGACTTACCTCTT
1 CAAAAGATCGACTTACCTCTT
99577570 CAAAACGATC-AC-TACCTC
1 CAAAA-GATCGACTTACCTC
99577588 GAATCAACTT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
20 6 0.35
21 7 0.41
22 4 0.24
ACGTcount: A:0.36, C:0.33, G:0.08, T:0.23
Consensus pattern (21 bp):
CAAAAGATCGACTTACCTCTT
Found at i:99582688 original size:42 final size:42
Alignment explanation
Indices: 99582567--99582721 Score: 186
Period size: 42 Copynumber: 3.7 Consensus size: 42
99582557 TACCATACCA
* * * * *
99582567 ATGCCATATCCCAGATATGGTTTTACA-TAGGATCTCGTATCG
1 ATGCCATATCCCAGATATGGTCTTACACGAAG-TCTCATATTG
* * * * *
99582609 ATGCCAATAGCCCAGCTATGGTCTTACAAGAAATCTCACATTG
1 ATGCC-ATATCCCAGATATGGTCTTACACGAAGTCTCATATTG
*
99582652 ATGCCATATCTCAGATATGGTCTTACACGAAGTCTCATATTG
1 ATGCCATATCCCAGATATGGTCTTACACGAAGTCTCATATTG
99582694 ATGCCATATCCCAGATATGGTCTTACAC
1 ATGCCATATCCCAGATATGGTCTTACAC
99582722 ATAGTCTTAG
Statistics
Matches: 95, Mismatches: 16, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
42 63 0.66
43 31 0.33
44 1 0.01
ACGTcount: A:0.29, C:0.24, G:0.17, T:0.30
Consensus pattern (42 bp):
ATGCCATATCCCAGATATGGTCTTACACGAAGTCTCATATTG
Found at i:99591424 original size:57 final size:57
Alignment explanation
Indices: 99591354--99591473 Score: 231
Period size: 57 Copynumber: 2.1 Consensus size: 57
99591344 ATAGCTGAAT
99591354 CAACCAAACATACTTATATACACCATGCCGATTCAATCAAACCACATCCAAAATCAC
1 CAACCAAACATACTTATATACACCATGCCGATTCAATCAAACCACATCCAAAATCAC
*
99591411 CGACCAAACATACTTATATACACCATGCCGATTCAATCAAACCACATCCAAAATCAC
1 CAACCAAACATACTTATATACACCATGCCGATTCAATCAAACCACATCCAAAATCAC
99591468 CAACCA
1 CAACCA
99591474 TTCTCAATAC
Statistics
Matches: 61, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
57 61 1.00
ACGTcount: A:0.43, C:0.34, G:0.04, T:0.18
Consensus pattern (57 bp):
CAACCAAACATACTTATATACACCATGCCGATTCAATCAAACCACATCCAAAATCAC
Found at i:99592737 original size:15 final size:15
Alignment explanation
Indices: 99592713--99592742 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
99592703 GTTCTTAATC
99592713 TAAACATATTCAAAT
1 TAAACATATTCAAAT
*
99592728 TAAACTTATTCAAAT
1 TAAACATATTCAAAT
99592743 ATATTTTCAC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.50, C:0.13, G:0.00, T:0.37
Consensus pattern (15 bp):
TAAACATATTCAAAT
Found at i:99593548 original size:14 final size:15
Alignment explanation
Indices: 99593531--99593559 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
99593521 ACACGAAAAT
99593531 TTCACACA-TATAAA
1 TTCACACATTATAAA
99593545 TTCACACATTATAAA
1 TTCACACATTATAAA
99593560 CACAGAAAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 8 0.57
15 6 0.43
ACGTcount: A:0.48, C:0.21, G:0.00, T:0.31
Consensus pattern (15 bp):
TTCACACATTATAAA
Found at i:99594614 original size:43 final size:43
Alignment explanation
Indices: 99594535--99594691 Score: 181
Period size: 43 Copynumber: 3.7 Consensus size: 43
99594525 CAATGTCATA
* * * *
99594535 TCCCAGATATGGTCTTACATGTTATCACATATCGATGCCACTG
1 TCCCAGATATGGTCTTACACGTAATCACATAACGATGCCAATG
* * * *
99594578 TCCCAGATAGGGTCTTATACGAAATCATATAACGATGCCAATG
1 TCCCAGATATGGTCTTACACGTAATCACATAACGATGCCAATG
* *
99594621 TCCCAGACATGGTCTTACACGTAATCACA-ATACTATGCCAATG
1 TCCCAGATATGGTCTTACACGTAATCACATA-ACGATGCCAATG
* * *
99594664 TCCCAAACATGGTCTTACATGTAATCAC
1 TCCCAGATATGGTCTTACACGTAATCAC
99594692 GGTAATCCTA
Statistics
Matches: 97, Mismatches: 16, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
42 1 0.01
43 96 0.99
ACGTcount: A:0.31, C:0.25, G:0.15, T:0.28
Consensus pattern (43 bp):
TCCCAGATATGGTCTTACACGTAATCACATAACGATGCCAATG
Found at i:99596649 original size:42 final size:42
Alignment explanation
Indices: 99596532--99596724 Score: 219
Period size: 42 Copynumber: 4.6 Consensus size: 42
99596522 ATACCAATGA
* * *
99596532 CATATCCCAGATATGGTCTTACATG-AGATCTCGTATCGATGC
1 CATATCCCAGATATGGTCTTACACGAAG-TCTCATATTGATGC
* * * * * **
99596574 CAGTAGCCCA-ACTATAGTCTTACATGAAATCTCACATCAATGC
1 CA-TATCCCAGA-TATGGTCTTACACGAAGTCTCATATTGATGC
* *
99596617 CATATCCTAGATATGGTTTTACACGAAGTCTCATATTGATGC
1 CATATCCCAGATATGGTCTTACACGAAGTCTCATATTGATGC
* *
99596659 CATATCCCAAATATGGTCTTACAAGAAGTCTCATATTGATGC
1 CATATCCCAGATATGGTCTTACACGAAGTCTCATATTGATGC
99596701 CATATCCCAGATATGGTCTTACAC
1 CATATCCCAGATATGGTCTTACAC
99596725 ATAGTCTTAG
Statistics
Matches: 126, Mismatches: 21, Indels: 8
0.81 0.14 0.05
Matches are distributed among these distances:
42 92 0.73
43 33 0.26
44 1 0.01
ACGTcount: A:0.31, C:0.24, G:0.15, T:0.31
Consensus pattern (42 bp):
CATATCCCAGATATGGTCTTACACGAAGTCTCATATTGATGC
Found at i:99596706 original size:84 final size:85
Alignment explanation
Indices: 99596526--99596724 Score: 249
Period size: 84 Copynumber: 2.4 Consensus size: 85
99596516 GGTACCATAC
* * * *
99596526 CAATGACATATCCCAGATATGGTCTTACATGAGATCTCGTATCGATGCCAGTAGCCCAACTATAG
1 CAATGCCATATCCCAGATATGGTCTTACACGAGATCTCATATCGATGCCAGTAGCCCAAATATAG
*
99596591 TCTTACATGAAATCTCACAT
66 TCTTACAAGAAATCTCACAT
* * * * *
99596611 CAATGCCATATCCTAGATATGGTTTTACACGA-AGTCTCATATTGATGCCA-TATCCCAAATATG
1 CAATGCCATATCCCAGATATGGTCTTACACGAGA-TCTCATATCGATGCCAGTAGCCCAAATATA
* *
99596674 GTCTTACAAGAAGTCTCATAT
65 GTCTTACAAGAAATCTCACAT
**
99596695 TGATGCCATATCCCAGATATGGTCTTACAC
1 CAATGCCATATCCCAGATATGGTCTTACAC
99596725 ATAGTCTTAG
Statistics
Matches: 97, Mismatches: 16, Indels: 3
0.84 0.14 0.03
Matches are distributed among these distances:
84 55 0.57
85 42 0.43
ACGTcount: A:0.31, C:0.24, G:0.15, T:0.30
Consensus pattern (85 bp):
CAATGCCATATCCCAGATATGGTCTTACACGAGATCTCATATCGATGCCAGTAGCCCAAATATAG
TCTTACAAGAAATCTCACAT
Found at i:99600898 original size:30 final size:30
Alignment explanation
Indices: 99600864--99600922 Score: 100
Period size: 30 Copynumber: 2.0 Consensus size: 30
99600854 ACTTATTTTA
99600864 TTGTTAAATTTGTTATTATTTTAAAGACAT
1 TTGTTAAATTTGTTATTATTTTAAAGACAT
* *
99600894 TTGTTAATTTTGTTATTATTTTAGAGACA
1 TTGTTAAATTTGTTATTATTTTAAAGACA
99600923 AGTGTTATTT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.31, C:0.03, G:0.12, T:0.54
Consensus pattern (30 bp):
TTGTTAAATTTGTTATTATTTTAAAGACAT
Found at i:99600929 original size:30 final size:30
Alignment explanation
Indices: 99600865--99600929 Score: 94
Period size: 30 Copynumber: 2.2 Consensus size: 30
99600855 CTTATTTTAT
**
99600865 TGTTAAATTTGTTATTATTTTAAAGACATT
1 TGTTAAATTTGTTATTATTTTAAAGACAAG
* *
99600895 TGTTAATTTTGTTATTATTTTAGAGACAAG
1 TGTTAAATTTGTTATTATTTTAAAGACAAG
99600925 TGTTA
1 TGTTA
99600930 TTTAAGTATA
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.31, C:0.03, G:0.14, T:0.52
Consensus pattern (30 bp):
TGTTAAATTTGTTATTATTTTAAAGACAAG
Found at i:99608011 original size:42 final size:42
Alignment explanation
Indices: 99607913--99608153 Score: 166
Period size: 43 Copynumber: 5.7 Consensus size: 42
99607903 CACAAGTACA
* * * *
99607913 ATGCCAACGTCCCGGACATGGTCTTACATTTAATTC-AATATCG
1 ATGCCAATGTCCCAGACATGGTCTTACA-TGAAATCAAATA-CG
** *
99607956 ATGCCTCTGTCCCAGACAGGGTCTTACATGAAATCAAATACG
1 ATGCCAATGTCCCAGACATGGTCTTACATGAAATCAAATACG
* *
99607998 ATGCCAATGTCCCAGACATGGTCTTATATGTAAATCTCAAT-CG
1 ATGCCAATGTCCCAGACATGGTCTTACATG-AAATC-AAATACG
** * * *
99608041 -TGGCCTGTGTTCCAGACATGGTCTTACATGATATCAGATACG
1 AT-GCCAATGTCCCAGACATGGTCTTACATGAAATCAAATACG
* * * * * * *
99608083 ATGCCAATTTCCTAGGCATGGTATTATACGTAAATCTCAAT-CG
1 ATGCCAATGTCCCAGACATGGTCTTACATG-AAATC-AAATACG
* * * *
99608126 AGGCCTATGTCCCAAACACGGTCTTACA
1 ATGCCAATGTCCCAGACATGGTCTTACA
99608154 CGATATCTCA
Statistics
Matches: 150, Mismatches: 40, Indels: 16
0.73 0.19 0.08
Matches are distributed among these distances:
41 2 0.01
42 59 0.39
43 84 0.56
44 5 0.03
ACGTcount: A:0.29, C:0.24, G:0.18, T:0.29
Consensus pattern (42 bp):
ATGCCAATGTCCCAGACATGGTCTTACATGAAATCAAATACG
Found at i:99608056 original size:85 final size:85
Alignment explanation
Indices: 99607913--99608153 Score: 272
Period size: 85 Copynumber: 2.8 Consensus size: 85
99607903 CACAAGTACA
* * * * * *
99607913 ATGCCAACGTCCCGGACATGGTCTTACAT-TTAAT-TCAATATCGAT-GCCTCTGTCCCAGACAG
1 ATGCCAATGTCCCAGACATGGTCTTATATGTAAATCTC-A-ATCG-TGGCCTATGTCCCAGACAC
99607975 GGTCTTACATGAAATCAAATACG
63 GGTCTTACATGAAATCAAATACG
* * *
99607998 ATGCCAATGTCCCAGACATGGTCTTATATGTAAATCTCAATCGTGGCCTGTGTTCCAGACATGGT
1 ATGCCAATGTCCCAGACATGGTCTTATATGTAAATCTCAATCGTGGCCTATGTCCCAGACACGGT
* *
99608063 CTTACATGATATCAGATACG
66 CTTACATGAAATCAAATACG
* * * * * * *
99608083 ATGCCAATTTCCTAGGCATGGTATTATACGTAAATCTCAATCGAGGCCTATGTCCCAAACACGGT
1 ATGCCAATGTCCCAGACATGGTCTTATATGTAAATCTCAATCGTGGCCTATGTCCCAGACACGGT
99608148 CTTACA
66 CTTACA
99608154 CGATATCTCA
Statistics
Matches: 134, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
84 1 0.01
85 126 0.94
86 5 0.04
87 2 0.01
ACGTcount: A:0.29, C:0.24, G:0.18, T:0.29
Consensus pattern (85 bp):
ATGCCAATGTCCCAGACATGGTCTTATATGTAAATCTCAATCGTGGCCTATGTCCCAGACACGGT
CTTACATGAAATCAAATACG
Found at i:99608159 original size:85 final size:85
Alignment explanation
Indices: 99607952--99608182 Score: 275
Period size: 85 Copynumber: 2.7 Consensus size: 85
99607942 TTAATTCAAT
* * * * * * *
99607952 ATCGATGCCTCTGTCCCAGACAGGGTCTTACATGAAATCAAATACGATGCCAATGTCCCAGACAT
1 ATCGAGGCCTATGTCCCAGACACGGTCTTACATGATATCAGATACGATGCCAATTTCCTAGACAT
* *
99608017 GGTCTTATATGTAAATCTCA
66 GGTATTATACGTAAATCTCA
* * * * *
99608037 ATCGTGGCCTGTGTTCCAGACATGGTCTTACATGATATCAGATACGATGCCAATTTCCTAGGCAT
1 ATCGAGGCCTATGTCCCAGACACGGTCTTACATGATATCAGATACGATGCCAATTTCCTAGACAT
99608102 GGTATTATACGTAAATCTCA
66 GGTATTATACGTAAATCTCA
* * *
99608122 ATCGAGGCCTATGTCCCAAACACGGTCTTACACGATATCTCAGATA-GATGTCAATGTTCCT
1 ATCGAGGCCTATGTCCCAGACACGGTCTTACATGATA--TCAGATACGATGCCAAT-TTCCT
99608183 TTAGAAGCAT
Statistics
Matches: 124, Mismatches: 19, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
85 104 0.84
86 8 0.06
87 12 0.10
ACGTcount: A:0.29, C:0.24, G:0.19, T:0.29
Consensus pattern (85 bp):
ATCGAGGCCTATGTCCCAGACACGGTCTTACATGATATCAGATACGATGCCAATTTCCTAGACAT
GGTATTATACGTAAATCTCA
Found at i:99610220 original size:46 final size:48
Alignment explanation
Indices: 99610112--99610433 Score: 267
Period size: 46 Copynumber: 6.8 Consensus size: 48
99610102 TGCTTATTGT
* * * * *
99610112 GAGCTAGTGTAAGACCATTTCTGGGACATGGAGTCGGCATTGAGAAG-A
1 GAGCTAGTGTAAGACCATGTCTGGGACATGCA-TCGGCCTCGAGATGTA
* *
99610160 GTGCTAGTGTAAGA-CATGTCTGGGACATGCATTGGCCTCGAGATGTA
1 GAGCTAGTGTAAGACCATGTCTGGGACATGCATCGGCCTCGAGATGTA
99610207 -AGCTAGTGTAAGA-CATGTCTGGGACATGCATCGG-CTACGAGATGT-
1 GAGCTAGTGTAAGACCATGTCTGGGACATGCATCGGCCT-CGAGATGTA
* * *
99610252 G-TC-AGTGTAAGACCATGTCTGGGACATGGCATCGGCAC-GGATATGTGA
1 GAGCTAGTGTAAGACCATGTCTGGGACAT-GCATCGGC-CTCGAGATGT-A
* **
99610300 GAGCTAGTGTAAGACCATGTCTGGGACATGGCGTCGGCCTCGATTTCG-A
1 GAGCTAGTGTAAGACCATGTCTGGGACAT-GCATCGGCCTCGAGAT-GTA
* * ** * *
99610349 TAG-TCAGTGTAAGACCATGTTTGGGACATGGCATC-TACT--TGATGGA
1 GAGCT-AGTGTAAGACCATGTCTGGGACAT-GCATCGGCCTCGAGATGTA
*
99610395 TGAGCCAGTGTAAGACCATGTCTGGGACATGACATCGGC
1 -GAGCTAGTGTAAGACCATGTCTGGGACATG-CATCGGC
99610434 ATTATACCCT
Statistics
Matches: 226, Mismatches: 29, Indels: 38
0.77 0.10 0.13
Matches are distributed among these distances:
44 9 0.04
45 18 0.08
46 66 0.29
47 45 0.20
48 18 0.08
49 33 0.15
50 36 0.16
51 1 0.00
ACGTcount: A:0.25, C:0.18, G:0.32, T:0.25
Consensus pattern (48 bp):
GAGCTAGTGTAAGACCATGTCTGGGACATGCATCGGCCTCGAGATGTA
Found at i:99620982 original size:7 final size:7
Alignment explanation
Indices: 99620963--99621016 Score: 99
Period size: 7 Copynumber: 7.6 Consensus size: 7
99620953 TTCAATTCAA
99620963 GTTTAGG
1 GTTTAGG
99620970 GTTTTAGG
1 G-TTTAGG
99620978 GTTTAGG
1 GTTTAGG
99620985 GTTTAGG
1 GTTTAGG
99620992 GTTTAGG
1 GTTTAGG
99620999 GTTTAGG
1 GTTTAGG
99621006 GTTTAGG
1 GTTTAGG
99621013 GTTT
1 GTTT
99621017 GTTTTCAATT
Statistics
Matches: 46, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
7 39 0.85
8 7 0.15
ACGTcount: A:0.13, C:0.00, G:0.41, T:0.46
Consensus pattern (7 bp):
GTTTAGG
Found at i:99624562 original size:50 final size:51
Alignment explanation
Indices: 99624485--99624613 Score: 199
Period size: 50 Copynumber: 2.5 Consensus size: 51
99624475 GACCATGGCA
99624485 ACAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGA-AAAGTG
1 ACAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAA-TG
*
99624536 A-AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAATGACAAATG
1 ACAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATG
* * *
99624586 ACAAGTGAAAAGTGGTAGCTTCAGCTAC
1 ACAAGTGATAAGTGATAGCTTCGGCTAC
99624614 CTGATCCGTG
Statistics
Matches: 72, Mismatches: 4, Indels: 4
0.90 0.05 0.05
Matches are distributed among these distances:
50 45 0.62
51 27 0.38
ACGTcount: A:0.36, C:0.16, G:0.22, T:0.26
Consensus pattern (51 bp):
ACAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATG
Found at i:99624628 original size:31 final size:31
Alignment explanation
Indices: 99624589--99624768 Score: 247
Period size: 31 Copynumber: 5.8 Consensus size: 31
99624579 ACAAATGACA
*
99624589 AGTGAAAAGTGGTAGCTTCAGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
* *
99624620 CGTGAAAAGTGGTAGCTTCTGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
*
99624651 AGTGAAAAGTGGTTG-TTCCGGCTACCTGATC
1 AGTGAAAAGTGGTAGCTT-CGGCTACCTGATC
99624682 AGTGAAAAGTGGTAGC-TCTGGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTC-GGCTACCTGATC
* * *
99624713 AGTAAAAAATGGTAGCTCCGGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
* *
99624744 AGTGAATAGTGGTAGCTTTGGCTAC
1 AGTGAAAAGTGGTAGCTTCGGCTAC
99624769 AAGTGACAAG
Statistics
Matches: 131, Mismatches: 14, Indels: 8
0.86 0.09 0.05
Matches are distributed among these distances:
30 3 0.02
31 127 0.97
32 1 0.01
ACGTcount: A:0.26, C:0.19, G:0.27, T:0.27
Consensus pattern (31 bp):
AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
Found at i:99624857 original size:47 final size:46
Alignment explanation
Indices: 99624788--99624909 Score: 154
Period size: 47 Copynumber: 2.6 Consensus size: 46
99624778 GTGATTTCCG
* *
99624788 TATAAGACCATATCTGGGATATGGCATCGGTGTGATATATGCTACTA
1 TATAAGACCATATCTGGGATATGGCATCGGTGAGATATATGAT-CTA
* * * *
99624835 TATAAGACCATATCTGGGATATGGCATCAGTGAGATATGTGATTTG
1 TATAAGACCATATCTGGGATATGGCATCGGTGAGATATATGATCTA
* * *
99624881 TGTAAGACCATAGCTGGGCTATGGCATCG
1 TATAAGACCATATCTGGGATATGGCATCG
99624910 ATATATGAAT
Statistics
Matches: 65, Mismatches: 10, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
46 26 0.40
47 39 0.60
ACGTcount: A:0.29, C:0.15, G:0.26, T:0.30
Consensus pattern (46 bp):
TATAAGACCATATCTGGGATATGGCATCGGTGAGATATATGATCTA
Found at i:99624987 original size:42 final size:42
Alignment explanation
Indices: 99624879--99624994 Score: 162
Period size: 42 Copynumber: 2.8 Consensus size: 42
99624869 ATATGTGATT
*
99624879 TGTGTAAGACCATAGCTGGGCTATGGCATCGATATATGAATA
1 TGTGTAAGACCATAGCTGGGCTATGGCATCGATATATGAAGA
* *
99624921 TGTGTAAGACCATAGCCGGGCTATGGCATC-ATTATGTGAAGA
1 TGTGTAAGACCATAGCTGGGCTATGGCATCGA-TATATGAAGA
* **
99624963 TGTGTAAGACCATAGTTGAACTATGGCATCGA
1 TGTGTAAGACCATAGCTGGGCTATGGCATCGA
99624995 GAAAATGAAG
Statistics
Matches: 65, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
41 1 0.02
42 63 0.97
43 1 0.02
ACGTcount: A:0.30, C:0.16, G:0.27, T:0.28
Consensus pattern (42 bp):
TGTGTAAGACCATAGCTGGGCTATGGCATCGATATATGAAGA
Found at i:99627042 original size:13 final size:14
Alignment explanation
Indices: 99627024--99627054 Score: 55
Period size: 13 Copynumber: 2.3 Consensus size: 14
99627014 GCGAGATTTG
99627024 TACAACATAC-ACA
1 TACAACATACAACA
99627037 TACAACATACAACA
1 TACAACATACAACA
99627051 TACA
1 TACA
99627055 TGGCAGACTA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 10 0.59
14 7 0.41
ACGTcount: A:0.55, C:0.29, G:0.00, T:0.16
Consensus pattern (14 bp):
TACAACATACAACA
Found at i:99627044 original size:7 final size:7
Alignment explanation
Indices: 99627024--99627054 Score: 55
Period size: 7 Copynumber: 4.6 Consensus size: 7
99627014 GCGAGATTTG
99627024 TACAACA
1 TACAACA
99627031 TAC-ACA
1 TACAACA
99627037 TACAACA
1 TACAACA
99627044 TACAACA
1 TACAACA
99627051 TACA
1 TACA
99627055 TGGCAGACTA
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
6 6 0.26
7 17 0.74
ACGTcount: A:0.55, C:0.29, G:0.00, T:0.16
Consensus pattern (7 bp):
TACAACA
Found at i:99633163 original size:68 final size:64
Alignment explanation
Indices: 99633084--99633298 Score: 200
Period size: 67 Copynumber: 3.3 Consensus size: 64
99633074 GAGTGCACAT
* *
99633084 CATGTGTACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGTGATACTATGTGTA
1 CATGTATACAAGAGAGCTAC--GAGA-TAT-ATGTAGCTAGGTCGCATGGGTGATACTATGTGTA
99633149 CAC
62 CAC
* * * * * * *
99633152 CATGTATACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGAC
1 CATGTATACAAGAGAGCTACGAGATATATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTAC
99633217 AC
63 AC
* * * * * *
99633219 CATGTAGACAAGAGAGCTACGAGATAAACTG--GCTAGGTCACATGGGTGGTACTAAGTGTTCAC
1 CATGTATACAAGAGAGCTACGAGATATA-TGTAGCTAGGTCGCATGGGTGATACTATGTGTACAC
*
99633282 CATGTGTACAAGAGAGC
1 CATGTATACAAGAGAGC
99633299 CGAACTATAT
Statistics
Matches: 120, Mismatches: 23, Indels: 13
0.77 0.15 0.08
Matches are distributed among these distances:
63 19 0.16
64 21 0.17
65 11 0.09
66 18 0.15
67 30 0.25
68 21 0.17
ACGTcount: A:0.31, C:0.17, G:0.28, T:0.23
Consensus pattern (64 bp):
CATGTATACAAGAGAGCTACGAGATATATGTAGCTAGGTCGCATGGGTGATACTATGTGTACAC
Found at i:99636569 original size:40 final size:40
Alignment explanation
Indices: 99636510--99636941 Score: 693
Period size: 40 Copynumber: 10.8 Consensus size: 40
99636500 GAGAATTGAG
* *
99636510 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTCCCGAAGAGCATTCGTGCT
*
99636550 AGTGATGTATCCGGACTAAGTCTCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTCCCGAAGAGCATTCGTGCT
* *
99636590 AGTGATGTATCCAGACTAAGTCTCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTCCCGAAGAGCATTCGTGCT
* *
99636630 AGTGATGTATCCGAACTAAGTCTCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTCCCGAAGAGCATTCGTGCT
*
99636670 AGTGATGTATCCGGACTAAGTCCCAAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTCCCGAAGAGCATTCGTGCT
*
99636710 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTCCCGAAGAGCATTCGTGCT
99636750 AGTGATGTATCCGGACTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTCCCGAAGAGCATTCGTGCT
*
99636790 AGTGATGTATCCGGACTAAGTCCCGAAGAGCATTTGTGCT
1 AGTGATGTATCCGGACTAAGTCCCGAAGAGCATTCGTGCT
* *
99636830 AGTGATGTATCCAGACTAAGTCCCGAAGATCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTCCCGAAGAGCATTCGTGCT
* *
99636870 AGTGATGTATCCGGGCTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTCCCGAAGAGCATTCGTGCT
* * * * *
99636910 GGTGTTATATCCGGGCTAGGTCCCGAAGAGCA
1 AGTGATGTATCCGGACTAAGTCCCGAAGAGCA
99636942 ATCATGTTGG
Statistics
Matches: 367, Mismatches: 25, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
40 367 1.00
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.26
Consensus pattern (40 bp):
AGTGATGTATCCGGACTAAGTCCCGAAGAGCATTCGTGCT
Found at i:99641029 original size:47 final size:47
Alignment explanation
Indices: 99640975--99641168 Score: 289
Period size: 47 Copynumber: 4.1 Consensus size: 47
99640965 TTAGGATTTT
** * *
99640975 ATGTGATGAATGTGAATGTGTATATATGAGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
99641022 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
99641069 ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * * * *
99641116 ATGTGGTGAATATGAACATGCATATATGTGGTAAAGCCGAATGGCTA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
99641163 ATGTGA
1 ATGTGA
99641169 AATATGTATG
Statistics
Matches: 133, Mismatches: 14, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
47 133 1.00
ACGTcount: A:0.33, C:0.11, G:0.29, T:0.27
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
Found at i:99641075 original size:22 final size:22
Alignment explanation
Indices: 99641004--99641075 Score: 58
Period size: 22 Copynumber: 3.1 Consensus size: 22
99640994 GTATATATGA
99641004 GATAAGGCCGAATGGCCAATGT
1 GATAAGGCCGAATGGCCAATGT
* * *
99641026 GATGAATG-TGAACAT-GCATATATGT
1 GAT-AAGGCCG-A-ATGGC-CA-ATGT
99641051 GATAAGGCCGAATGGCCAATGT
1 GATAAGGCCGAATGGCCAATGT
99641073 GAT
1 GAT
99641076 GAATGTGAGC
Statistics
Matches: 37, Mismatches: 6, Indels: 14
0.65 0.11 0.25
Matches are distributed among these distances:
22 11 0.30
23 9 0.24
24 9 0.24
25 8 0.22
ACGTcount: A:0.33, C:0.14, G:0.29, T:0.24
Consensus pattern (22 bp):
GATAAGGCCGAATGGCCAATGT
Found at i:99641124 original size:25 final size:25
Alignment explanation
Indices: 99641049--99641124 Score: 63
Period size: 23 Copynumber: 3.2 Consensus size: 25
99641039 ATGCATATAT
99641049 GTGATAAGGCCGAATGGCCAATGTG
1 GTGATAAGGCCGAATGGCCAATGTG
* * * *
99641074 ATGA-ATGTG-AGCAT-G-CATATGT-
1 GTGATAAG-GCCGAATGGCCA-ATGTG
99641096 GTGATAAGGCCGAATGGCCAATGTG
1 GTGATAAGGCCGAATGGCCAATGTG
99641121 GTGA
1 GTGA
99641125 ATATGAACAT
Statistics
Matches: 36, Mismatches: 8, Indels: 14
0.62 0.14 0.24
Matches are distributed among these distances:
22 6 0.17
23 10 0.28
24 10 0.28
25 10 0.28
ACGTcount: A:0.29, C:0.13, G:0.34, T:0.24
Consensus pattern (25 bp):
GTGATAAGGCCGAATGGCCAATGTG
Found at i:99641303 original size:98 final size:96
Alignment explanation
Indices: 99641139--99641322 Score: 298
Period size: 98 Copynumber: 1.9 Consensus size: 96
99641129 GAACATGCAT
* *
99641139 ATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGCAAAGTCGA
1 ATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATATGTGGCAAAGCCGA
99641204 ATGGCTAATGTGAAATATGTATGAGATATGC
66 ATGGCTAATGTGAAATATGTATGAGATATGC
*
99641235 ATATGTGGTAAAGCCGAATGG-TCAATGTGAAATATATATATGAGATATGTATATGTGGTAAAGC
1 ATATGTGGTAAAGCCGAATGGCT-AATGTG-AA-ATATATATGAGATATGTATATGTGGCAAAGC
*
99641299 CGAATGGCTAGTGTGAAATATGTA
63 CGAATGGCTAATGTGAAATATGTA
99641323 GGCGATGTGC
Statistics
Matches: 81, Mismatches: 4, Indels: 4
0.91 0.04 0.04
Matches are distributed among these distances:
95 1 0.01
96 27 0.33
97 2 0.02
98 51 0.63
ACGTcount: A:0.36, C:0.07, G:0.27, T:0.30
Consensus pattern (96 bp):
ATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATATGTGGCAAAGCCGA
ATGGCTAATGTGAAATATGTATGAGATATGC
Found at i:99641338 original size:50 final size:48
Alignment explanation
Indices: 99641138--99641322 Score: 291
Period size: 48 Copynumber: 3.8 Consensus size: 48
99641128 TGAACATGCA
99641138 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
* *
99641186 TATATGTGGCAAAGTCGAATGGCTAATGTGAAATATGTATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
* *
99641234 CATATGTGGTAAAGCCGAATGG-TCAATGTGAAATATATATATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCT-AATGTG-AA-ATATGTATGAGATATG
*
99641284 TATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTA
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTA
99641323 GGCGATGTGC
Statistics
Matches: 124, Mismatches: 9, Indels: 8
0.88 0.06 0.06
Matches are distributed among these distances:
47 1 0.01
48 77 0.62
49 4 0.03
50 41 0.33
51 1 0.01
ACGTcount: A:0.36, C:0.07, G:0.26, T:0.31
Consensus pattern (48 bp):
TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
Found at i:99641518 original size:37 final size:37
Alignment explanation
Indices: 99641468--99641539 Score: 119
Period size: 37 Copynumber: 1.9 Consensus size: 37
99641458 GGAAATATAT
*
99641468 TCCGGGTAAGACCCGATGACTAT-GTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATAACT-TCGTGTGGAGATTTTG
99641505 TCCGGGTAAGACCCGATAACTTCGTGTGGAGATTT
1 TCCGGGTAAGACCCGATAACTTCGTGTGGAGATTT
99641540 CGTCTGAGCT
Statistics
Matches: 33, Mismatches: 1, Indels: 2
0.92 0.03 0.06
Matches are distributed among these distances:
36 1 0.03
37 32 0.97
ACGTcount: A:0.22, C:0.18, G:0.31, T:0.29
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATAACTTCGTGTGGAGATTTTG
Found at i:99643039 original size:50 final size:50
Alignment explanation
Indices: 99642928--99643169 Score: 213
Period size: 50 Copynumber: 4.7 Consensus size: 50
99642918 TGAGAACACA
* * *
99642928 TGTGTAGGACTATGTGCAGGCTACTATGTGTTTAAGACAG-TT-TTAGGTCACG
1 TGTGTAGTACTAAGTGCAGGCTACTATGTG--T-A-CCAGATTGTTAGGTCACG
* * *
99642980 TGTGTAGTACTAAGTGCAGGCTGCTATGTGTACCAGATTGTTAGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATTGTTAGGTCACG
* * * *
99643030 TGTGTAGTACTAAGTGTAGGCTACTATGTGTACCTA-ATATTTTCGATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTATGTGTACC-AGAT-TGTTAGGTCACG
* ** * * *
99643081 TATGTAGTACTAAGTGCAGGCTACTACATATATCC-GATGGTTAGGTCAGG
1 TGTGTAGTACTAAGTGCAGGCTACTATGTGTA-CCAGATTGTTAGGTCACG
* *
99643131 TGTGTGAAGTACAAAGTGCGGGCTACTATGTGTACCAGA
1 TGTGT--AGTACTAAGTGCAGGCTACTATGTGTACCAGA
99643170 GAGCTTCGGC
Statistics
Matches: 152, Mismatches: 29, Indels: 18
0.76 0.15 0.09
Matches are distributed among these distances:
48 3 0.02
49 3 0.02
50 54 0.36
51 39 0.26
52 53 0.35
ACGTcount: A:0.25, C:0.15, G:0.27, T:0.32
Consensus pattern (50 bp):
TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATTGTTAGGTCACG
Found at i:99643102 original size:51 final size:50
Alignment explanation
Indices: 99642914--99643169 Score: 196
Period size: 52 Copynumber: 5.0 Consensus size: 50
99642904 CGAATGATCC
* * * * * *
99642914 ATTGTGAGAACACATGTGTAGGACTATGTGCAGGCTACTATGTGTTTAAGACAG
1 ATTGTTAGATCACGTGTGTAGTACTAAGTGCAGGCTACTATGTG--T-A-CCAG
* *
99642968 -TT-TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTGCTATGTGTACCAG
1 ATTGTTAGATCACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAG
* * * *
99643016 ATTGTTAGGTCGCATGTGTAGTACTAAGTGTAGGCTACTATGTGTACCTA-
1 ATTGTTAGATCACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTACC-AG
* * * ** *
99643066 ATATTTTCGATCACGTATGTAGTACTAAGTGCAGGCTACTACATATATCC-G
1 AT-TGTTAGATCACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTA-CCAG
* * * * *
99643117 ATGGTTAGGTCAGGTGTGTGAAGTACAAAGTGCGGGCTACTATGTGTACCAG
1 ATTGTTAGATCACGTGTGT--AGTACTAAGTGCAGGCTACTATGTGTACCAG
99643169 A
1 A
99643170 GAGCTTCGGC
Statistics
Matches: 160, Mismatches: 33, Indels: 20
0.75 0.15 0.09
Matches are distributed among these distances:
48 3 0.02
49 3 0.02
50 54 0.34
51 39 0.24
52 59 0.37
53 2 0.01
ACGTcount: A:0.26, C:0.15, G:0.27, T:0.32
Consensus pattern (50 bp):
ATTGTTAGATCACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAG
Found at i:99643124 original size:101 final size:102
Alignment explanation
Indices: 99642975--99643166 Score: 246
Period size: 101 Copynumber: 1.9 Consensus size: 102
99642965 CAGTTTTAGG
* * ** * *
99642975 TCACGTGTGTAGTACTAAGTGCAGGCTGCTATGTGTACCAGATTGTTAGGTC-GCATGTGT-AGT
1 TCACGTATGTAGTACTAAGTGCAGGCTACTACATATACCAGATGGTTAGGTCAG-ATGTGTAAGT
* *
99643038 ACTAAGTGTAGGCTACTATGTGTACCTAATATTTTCGA
65 ACAAAGTGCAGGCTACTATGTGTACCTAATATTTTCGA
*
99643076 TCACGTATGTAGTACTAAGTGCAGGCTACTACATATATCC-GATGGTTAGGTCAGGTGTGTGAAG
1 TCACGTATGTAGTACTAAGTGCAGGCTACTACATATA-CCAGATGGTTAGGTCAGATGTGT-AAG
*
99643140 TACAAAGTGCGGGCTACTATGTGTACC
64 TACAAAGTGCAGGCTACTATGTGTACC
99643167 AGAGAGCTTC
Statistics
Matches: 77, Mismatches: 10, Indels: 6
0.83 0.11 0.06
Matches are distributed among these distances:
101 48 0.62
102 3 0.04
103 26 0.34
ACGTcount: A:0.25, C:0.17, G:0.27, T:0.32
Consensus pattern (102 bp):
TCACGTATGTAGTACTAAGTGCAGGCTACTACATATACCAGATGGTTAGGTCAGATGTGTAAGTA
CAAAGTGCAGGCTACTATGTGTACCTAATATTTTCGA
Found at i:99657634 original size:24 final size:24
Alignment explanation
Indices: 99657602--99657651 Score: 91
Period size: 24 Copynumber: 2.1 Consensus size: 24
99657592 ACAACAAAGA
99657602 ACCCATCCATAAAGAACGAAGGTT
1 ACCCATCCATAAAGAACGAAGGTT
*
99657626 ACCCATCCATGAAGAACGAAGGTT
1 ACCCATCCATAAAGAACGAAGGTT
99657650 AC
1 AC
99657652 AAATCGAGGA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.40, C:0.26, G:0.18, T:0.16
Consensus pattern (24 bp):
ACCCATCCATAAAGAACGAAGGTT
Found at i:99659240 original size:20 final size:20
Alignment explanation
Indices: 99659215--99659256 Score: 68
Period size: 20 Copynumber: 2.1 Consensus size: 20
99659205 ATTAAAATCT
99659215 TTTAGGTTG-TTTCTCCCAAG
1 TTTAGGTTGCTTT-TCCCAAG
99659235 TTTAGGTTGCTTTTCCCAAG
1 TTTAGGTTGCTTTTCCCAAG
99659255 TT
1 TT
99659257 GAAATTCACA
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
20 18 0.86
21 3 0.14
ACGTcount: A:0.14, C:0.19, G:0.19, T:0.48
Consensus pattern (20 bp):
TTTAGGTTGCTTTTCCCAAG
Found at i:99675127 original size:37 final size:37
Alignment explanation
Indices: 99675065--99675143 Score: 106
Period size: 37 Copynumber: 2.1 Consensus size: 37
99675055 TTATTACGAA
* * *
99675065 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCAGACAAAATCTCCACACGAAGTCATCGG
*
99675102 GTCTTACCCAGACAAAATC-CTCACACGTAGTCATCGG
1 GTCTTACCCAGACAAAATCTC-CACACGAAGTCATCGG
99675139 GTCTT
1 GTCTT
99675144 TAGAGCTCGG
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
36 1 0.03
37 36 0.97
ACGTcount: A:0.27, C:0.30, G:0.18, T:0.25
Consensus pattern (37 bp):
GTCTTACCCAGACAAAATCTCCACACGAAGTCATCGG
Found at i:99675340 original size:47 final size:47
Alignment explanation
Indices: 99675262--99675758 Score: 771
Period size: 47 Copynumber: 10.3 Consensus size: 47
99675252 CCCTTCGGGA
* * * * * *
99675262 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCA-GC
1 CTTATCACATATATACACTTTCACGTTCATCACATCGGCCA-TTAGGC
* * *
99675309 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACGTTCATCACATCGGCCATTAGGC
99675356 CTTATCACATATATACACTTTCACGTTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACGTTCATCACATCGGCCATTAGGC
99675403 CTTATCACATATATACACTTTCACGTTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACGTTCATCACATCGGCCATTAGGC
99675450 CTTATCACATATATACACTTTCACGTTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACGTTCATCACATCGGCCATTAGGC
99675497 CTTATCACATATATACACTTTCACGTTATTCATCACATCGGCTCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACG----T--T--CA-----TCACATCGGCCATTAGGC
99675557 CTTATCACATATATACACTTTCACGTTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACGTTCATCACATCGGCCATTAGGC
99675604 CTTATCACATATATACACTTTCACGTTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACGTTCATCACATCGGCCATTAGGC
99675651 CTTATCACATATATACACTTTCACGTTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACGTTCATCACATCGGCCATTAGGC
99675698 CTTATCACATATATACACTTTCACGTTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACGTTCATCACATCGGCCATTAGGC
*
99675745 CTTATCTCATATAT
1 CTTATCACATATAT
99675759 GCATGTTCAC
Statistics
Matches: 425, Mismatches: 11, Indels: 28
0.92 0.02 0.06
Matches are distributed among these distances:
46 2 0.00
47 372 0.88
51 1 0.00
52 2 0.00
53 1 0.00
54 1 0.00
55 2 0.00
56 1 0.00
60 43 0.10
ACGTcount: A:0.27, C:0.30, G:0.10, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACGTTCATCACATCGGCCATTAGGC
Found at i:99675683 original size:201 final size:198
Alignment explanation
Indices: 99675338--99675736 Score: 771
Period size: 201 Copynumber: 2.0 Consensus size: 198
99675328 TTCACATTCA
99675338 TCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACGTTCATCACATCGGCCATTAGGC
1 TCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACGTTCATCACATCGGCCATTAGGC
99675403 CTTATCACATATATACACTTTCACGTTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
66 CTTATCACATATATACACTTTCACGTTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
99675468 TTTCACGTTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACGTTATTCATCAC
131 TTTCACGTTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACG---TTCATCAC
99675533 ATCGGC
193 ATCGGC
99675539 TCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACGTTCATCACATCGGCCATTAGGC
1 TCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACGTTCATCACATCGGCCATTAGGC
99675604 CTTATCACATATATACACTTTCACGTTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
66 CTTATCACATATATACACTTTCACGTTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
99675669 TTTCACGTTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACGTTCATCACATC
131 TTTCACGTTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACGTTCATCACATC
99675734 GGC
196 GGC
99675737 CATTAGGCCT
Statistics
Matches: 198, Mismatches: 0, Indels: 3
0.99 0.00 0.01
Matches are distributed among these distances:
198 14 0.07
201 184 0.93
ACGTcount: A:0.27, C:0.30, G:0.11, T:0.32
Consensus pattern (198 bp):
TCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACGTTCATCACATCGGCCATTAGGC
CTTATCACATATATACACTTTCACGTTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
TTTCACGTTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACGTTCATCACATC
GGC
Found at i:99689531 original size:28 final size:27
Alignment explanation
Indices: 99689473--99689680 Score: 326
Period size: 28 Copynumber: 7.6 Consensus size: 27
99689463 TAAATTGTGC
*
99689473 AGCACTAAGTGTGCGAATTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
99689500 AGCACTAAGTGTGCGAGTCTGACTATGT
1 AGCACTAAGTGTGCGAGT-TGACTATGT
99689528 AGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAG-TTGACTATGT
99689556 AGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAG-TTGACTATGT
*
99689584 AGCACTAAGTGTGCTAGTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
*
99689611 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAG-TTGACTATGT
* *
99689639 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGTTGACTATGT
*
99689666 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
99689681 GACTTAATAT
Statistics
Matches: 172, Mismatches: 6, Indels: 6
0.93 0.03 0.03
Matches are distributed among these distances:
27 66 0.38
28 105 0.61
29 1 0.01
ACGTcount: A:0.26, C:0.14, G:0.28, T:0.31
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGTTGACTATGT
Found at i:99689538 original size:55 final size:55
Alignment explanation
Indices: 99689473--99689680 Score: 344
Period size: 55 Copynumber: 3.8 Consensus size: 55
99689463 TAAATTGTGC
* *
99689473 AGCACTAAGTGTGCGAATTGACTATGTAGCACTAAGTGTGCGAGTCTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
99689528 AGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAG-TTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
* *
99689584 AGCACTAAGTGTGCTAGTTGACTATGTAGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
* * *
99689639 AGCACTAAGTGTGCGAGTTGATTATATAGCACTGAGTGTGCG
1 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCG
99689681 GACTTAATAT
Statistics
Matches: 144, Mismatches: 8, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
55 91 0.63
56 53 0.37
ACGTcount: A:0.26, C:0.14, G:0.28, T:0.31
Consensus pattern (55 bp):
AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
Found at i:99689615 original size:83 final size:83
Alignment explanation
Indices: 99689473--99689680 Score: 346
Period size: 83 Copynumber: 2.5 Consensus size: 83
99689463 TAAATTGTGC
*
99689473 AGCACTAAGTGTGCGAATTGACTATGTAGCACTAAGTGTGCGAGTCTGACTATGTAGCACTAAGT
1 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTCTGACTATGTAGCACTAAGT
99689538 GTGCGAGTTTGACTATGT
66 GTGCGAGTTTGACTATGT
*
99689556 AGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCTAGT-TGACTATGTAGCACTAAG
1 AGCACTAAGTGTGCGAG-TTGACTATGTAGCACTAAGTGTGCGAGTCTGACTATGTAGCACTAAG
*
99689620 TGTGCGAGTTTGATTATGT
65 TGTGCGAGTTTGACTATGT
* * *
99689639 AGCACTAAGTGTGCGAGTTGATTATATAGCACTGAGTGTGCG
1 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCG
99689681 GACTTAATAT
Statistics
Matches: 117, Mismatches: 7, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
82 21 0.18
83 69 0.59
84 27 0.23
ACGTcount: A:0.26, C:0.14, G:0.28, T:0.31
Consensus pattern (83 bp):
AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTCTGACTATGTAGCACTAAGT
GTGCGAGTTTGACTATGT
Found at i:99699108 original size:40 final size:40
Alignment explanation
Indices: 99699053--99699159 Score: 196
Period size: 40 Copynumber: 2.7 Consensus size: 40
99699043 ATTTGAATGA
99699053 TATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTT
1 TATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTT
*
99699093 TATCCGGGCTAAGTCCCGAATGCATTTATGCTAGTGATTT
1 TATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTT
*
99699133 TATCCGGGCTAAGACCCGAAGGCATTT
1 TATCCGGGCTAAGTCCCGAAGGCATTT
99699160 GTGCGAGTTG
Statistics
Matches: 64, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
40 64 1.00
ACGTcount: A:0.23, C:0.21, G:0.24, T:0.31
Consensus pattern (40 bp):
TATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTT
Found at i:99699180 original size:40 final size:40
Alignment explanation
Indices: 99699053--99699223 Score: 193
Period size: 40 Copynumber: 4.3 Consensus size: 40
99699043 ATTTGAATGA
*
99699053 TATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTT
1 TATCCGGGCTAAGACCCGAAGGCATTTATGCTAGTGATTT
* *
99699093 TATCCGGGCTAAGTCCCGAATGCATTTATGCTAGTGATTT
1 TATCCGGGCTAAGACCCGAAGGCATTTATGCTAGTGATTT
* * * *
99699133 TATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CTA
1 TATCCGGGCTAAGACCCGAAGGCATTTATGCTAG-TGATTT
* * * * * * *
99699173 TACCCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTA
1 TATCCGGGCTAAGACCCGAAGGCATTTATGCTAGTGATTT
99699213 TATCC-GGCTAA
1 TATCCGGGCTAA
99699224 ATTCCGAAGA
Statistics
Matches: 114, Mismatches: 15, Indels: 5
0.85 0.11 0.04
Matches are distributed among these distances:
39 7 0.06
40 105 0.92
41 2 0.02
ACGTcount: A:0.23, C:0.21, G:0.26, T:0.30
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCATTTATGCTAGTGATTT
Found at i:99700541 original size:44 final size:44
Alignment explanation
Indices: 99700454--99700545 Score: 114
Period size: 44 Copynumber: 2.1 Consensus size: 44
99700444 CCGAAGTAAC
*
99700454 AGTAACAGTACGACACACAAAGTGCCTCATCGACATAAAGTCGA
1 AGTAACAGTACGACACACAAAGTGCCTCATCGACACAAAGTCGA
** * **
99700498 AGTAACAGTACGACACTA-TTAGTGCCTCATCGACCCATGGTCGA
1 AGTAACAGTACGACAC-ACAAAGTGCCTCATCGACACAAAGTCGA
99700542 AGTA
1 AGTA
99700546 TCCCTGTACA
Statistics
Matches: 41, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
44 40 0.98
45 1 0.02
ACGTcount: A:0.36, C:0.25, G:0.20, T:0.20
Consensus pattern (44 bp):
AGTAACAGTACGACACACAAAGTGCCTCATCGACACAAAGTCGA
Found at i:99701348 original size:13 final size:13
Alignment explanation
Indices: 99701330--99701363 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
99701320 ATAAATATTA
99701330 TAATAATATAATT
1 TAATAATATAATT
*
99701343 TAATAATATACTT
1 TAATAATATAATT
*
99701356 AAATAATA
1 TAATAATA
99701364 AGTGAACATA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.56, C:0.03, G:0.00, T:0.41
Consensus pattern (13 bp):
TAATAATATAATT
Found at i:99701494 original size:16 final size:17
Alignment explanation
Indices: 99701473--99701505 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
99701463 ACTTTATTTA
*
99701473 ATTAATATAA-AATATT
1 ATTAATACAATAATATT
99701489 ATTAATACAATAATATT
1 ATTAATACAATAATATT
99701506 TACTTAAATA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 9 0.60
17 6 0.40
ACGTcount: A:0.55, C:0.03, G:0.00, T:0.42
Consensus pattern (17 bp):
ATTAATACAATAATATT
Found at i:99706827 original size:33 final size:34
Alignment explanation
Indices: 99706784--99706862 Score: 88
Period size: 33 Copynumber: 2.4 Consensus size: 34
99706774 AAACAGTCTC
* * * *
99706784 GGCCTAAGCCCCTAACAATAGCATTATCAGTGT-
1 GGCCTTAGCCCATAACAATAACAGTATCAGTGTG
* * *
99706817 GGCCTTAGCCCATTACGATAACAGTATTAGTGTG
1 GGCCTTAGCCCATAACAATAACAGTATCAGTGTG
99706851 GGCCTTAGCCCA
1 GGCCTTAGCCCA
99706863 ATTTAGTATA
Statistics
Matches: 38, Mismatches: 7, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
33 26 0.68
34 12 0.32
ACGTcount: A:0.27, C:0.27, G:0.22, T:0.25
Consensus pattern (34 bp):
GGCCTTAGCCCATAACAATAACAGTATCAGTGTG
Found at i:99716781 original size:31 final size:30
Alignment explanation
Indices: 99716717--99716788 Score: 110
Period size: 30 Copynumber: 2.4 Consensus size: 30
99716707 TTAGGGCCGA
*
99716717 TTAGTGCTTATTCTTTCGGGTTTTTACTCT
1 TTAGTGCTTATTCTTTCGAGTTTTTACTCT
99716747 TTAGTGCTTATTCTTTCGAGTCATTTT-CTCT
1 TTAGTGCTTATTCTTTCGAGT--TTTTACTCT
99716778 TTAGTGCTTAT
1 TTAGTGCTTAT
99716789 CCGTTCACGT
Statistics
Matches: 39, Mismatches: 1, Indels: 3
0.91 0.02 0.07
Matches are distributed among these distances:
30 20 0.51
31 15 0.38
32 4 0.10
ACGTcount: A:0.12, C:0.17, G:0.15, T:0.56
Consensus pattern (30 bp):
TTAGTGCTTATTCTTTCGAGTTTTTACTCT
Found at i:99723686 original size:40 final size:39
Alignment explanation
Indices: 99723588--99723810 Score: 216
Period size: 40 Copynumber: 5.6 Consensus size: 39
99723578 TCCTCGTTCA
* * ** * *
99723588 AATGCCTTCGGGACATAGCCCGGATTTAGTAACTCACAC
1 AATGCCTTCGGGACTTAACCCGGATTTAACAATTCGCAC
*
99723627 AATGCCTTCGGGACATAACCCGGATTTAACAATTCGCAC
1 AATGCCTTCGGGACTTAACCCGGATTTAACAATTCGCAC
*
99723666 GAATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCAC
1 -AATGCCTTCGGGACTTAACCCGGATTTAACAATTCGCAC
**
99723706 GAATGCCTTCGGGACTTAACCCGGATTT-AGTATCTCGCAC
1 -AATGCCTTCGGGACTTAACCCGGATTTAACAAT-TCGCAC
* * * * * *
99723746 AAAGGCCTTC-GGATCTTAATCCGGATATATTCACTTAGCAC
1 -AATGCCTTCGGGA-CTTAACCCGGATTTA-ACAATTCGCAC
* *
99723787 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
99723811 CAGCATTCAA
Statistics
Matches: 156, Mismatches: 22, Indels: 11
0.83 0.12 0.06
Matches are distributed among these distances:
39 39 0.25
40 108 0.69
41 8 0.05
42 1 0.01
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (39 bp):
AATGCCTTCGGGACTTAACCCGGATTTAACAATTCGCAC
Found at i:99723744 original size:80 final size:79
Alignment explanation
Indices: 99723586--99723810 Score: 240
Period size: 80 Copynumber: 2.8 Consensus size: 79
99723576 GCTCCTCGTT
* * ** * *
99723586 CAAATGCCTTCGGGACATAGCCCGGATTTAGTAACTCACACAATGCCTTCGGGACATAACCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACAATGCCTTCGGGACTTAACCCGGA
99723651 TTTAACAATTCGCA
66 TTTAACAATTCGCA
*
99723665 CGAATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACGAATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCAC-AATGCCTTCGGGACTTAACCCGG
**
99723730 ATTT-AGTATCTCGCA
65 ATTTAACAAT-TCGCA
* * * * * * *
99723745 CAAAGGCCTTC-GGATCTTAATCCGGATATATTC-ACTTAGCACAAAGCCTTCGGGACTTAGCCC
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTA-ACAAC-TCGCACAATGCCTTCGGGACTTAACCC
99723808 GGA
63 GGA
99723811 CAGCATTCAA
Statistics
Matches: 124, Mismatches: 17, Indels: 9
0.83 0.11 0.06
Matches are distributed among these distances:
79 41 0.33
80 77 0.62
81 6 0.05
ACGTcount: A:0.28, C:0.28, G:0.20, T:0.24
Consensus pattern (79 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACAATGCCTTCGGGACTTAACCCGGA
TTTAACAATTCGCA
Found at i:99723810 original size:120 final size:119
Alignment explanation
Indices: 99723588--99723810 Score: 288
Period size: 120 Copynumber: 1.9 Consensus size: 119
99723578 TCCTCGTTCA
* * *
99723588 AATGCCTTCGGGACATAGCCCGGATTTAGTAACTCACACAATGCCTTCGGGACATAACCCGGATT
1 AATGCCTTCGGGACATAACCCGGATTTAGTAACTCACACAAGGCCTTCGGGACATAACCCGGATA
* *
99723653 TAACAATTCGCACGAATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
66 TAACAATTAGCACGAAAGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
* * * * *
99723707 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACAAAGGCCTTC-GGATCTTAATCCGGA
1 AATGCCTTCGGGACATAACCCGGATTTAGTAACTCACAC-AAGGCCTTCGGGA-CATAACCCGGA
* * *
99723771 TATATTCACTTAGCAC-AAAGCCTTCGGGACTTAGCCCGGA
64 TATA-ACAATTAGCACGAAAGCCTTCGGGACTTAACCCGGA
99723811 CAGCATTCAA
Statistics
Matches: 88, Mismatches: 13, Indels: 5
0.83 0.12 0.05
Matches are distributed among these distances:
119 38 0.43
120 42 0.48
121 8 0.09
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (119 bp):
AATGCCTTCGGGACATAACCCGGATTTAGTAACTCACACAAGGCCTTCGGGACATAACCCGGATA
TAACAATTAGCACGAAAGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
Found at i:99726912 original size:50 final size:50
Alignment explanation
Indices: 99726682--99726912 Score: 372
Period size: 50 Copynumber: 4.6 Consensus size: 50
99726672 GGGAATGAGA
*
99726682 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGAGAGG
1 TCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATGAGAGG
*
99726732 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGAGAGG
1 TCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATGAGAGG
* *
99726782 TCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACTGATATGAGAGG
1 TCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATGAGAGG
* * **
99726832 TCCCATGTAAGATCATGTCTGGGACATGGCGTTGGCACCGATATGAGAAC
1 TCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATGAGAGG
* *
99726882 TCCCATGTAAGACCATATCTGGGATATGGCG
1 TCCCATGTAAGACCATGTCTGGGACATGGCG
99726913 CAGTAAAAGA
Statistics
Matches: 171, Mismatches: 10, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
50 171 1.00
ACGTcount: A:0.26, C:0.22, G:0.30, T:0.23
Consensus pattern (50 bp):
TCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATGAGAGG
Found at i:99747554 original size:29 final size:28
Alignment explanation
Indices: 99747520--99747580 Score: 79
Period size: 29 Copynumber: 2.1 Consensus size: 28
99747510 TCAAAGATAT
99747520 TTATTTGTACTTGTTT-TTCTCTTTTTTTA
1 TTATTTGTACTT-TTTCTTCTC-TTTTTTA
* *
99747549 TTATTTTTTCTTTTTCTTCTCTTTTTTA
1 TTATTTGTACTTTTTCTTCTCTTTTTTA
99747577 TTAT
1 TTAT
99747581 ATTAGGGGAT
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
28 14 0.48
29 15 0.52
ACGTcount: A:0.10, C:0.11, G:0.03, T:0.75
Consensus pattern (28 bp):
TTATTTGTACTTTTTCTTCTCTTTTTTA
Found at i:99755887 original size:20 final size:20
Alignment explanation
Indices: 99755862--99755917 Score: 71
Period size: 20 Copynumber: 2.8 Consensus size: 20
99755852 TGCATAACAA
*
99755862 AGGCACCGAAATGCAGA-CAG
1 AGGCACCGAAGTGCA-ATCAG
99755882 AGGCA-CGAATGTGCAATCAG
1 AGGCACCGAA-GTGCAATCAG
99755902 AGGCACCGAAGTGCAA
1 AGGCACCGAAGTGCAA
99755918 ACCCATACAA
Statistics
Matches: 32, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
19 5 0.16
20 23 0.72
21 4 0.12
ACGTcount: A:0.38, C:0.23, G:0.30, T:0.09
Consensus pattern (20 bp):
AGGCACCGAAGTGCAATCAG
Found at i:99762760 original size:19 final size:17
Alignment explanation
Indices: 99762736--99762778 Score: 59
Period size: 17 Copynumber: 2.4 Consensus size: 17
99762726 TAATAAAAAA
99762736 TAAAATAAATGAAAAATTT
1 TAAAATAAA--AAAAATTT
*
99762755 TAAAATAAAACAAATTT
1 TAAAATAAAAAAAATTT
99762772 TAAAATA
1 TAAAATA
99762779 GGAAATATAA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
17 14 0.61
19 9 0.39
ACGTcount: A:0.65, C:0.02, G:0.02, T:0.30
Consensus pattern (17 bp):
TAAAATAAAAAAAATTT
Found at i:99766976 original size:24 final size:24
Alignment explanation
Indices: 99766944--99766989 Score: 83
Period size: 24 Copynumber: 1.9 Consensus size: 24
99766934 AAAAACACAC
*
99766944 GAACGTACATTGCCCTTAATTTTG
1 GAACATACATTGCCCTTAATTTTG
99766968 GAACATACATTGCCCTTAATTT
1 GAACATACATTGCCCTTAATTT
99766990 AAAATAATTA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.28, C:0.22, G:0.13, T:0.37
Consensus pattern (24 bp):
GAACATACATTGCCCTTAATTTTG
Found at i:99768132 original size:15 final size:15
Alignment explanation
Indices: 99768112--99768141 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
99768102 TCATATGAGT
*
99768112 ACTCATTATCTTCAC
1 ACTCATTATCATCAC
99768127 ACTCATTATCATCAC
1 ACTCATTATCATCAC
99768142 TCCATTGGTT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.30, C:0.33, G:0.00, T:0.37
Consensus pattern (15 bp):
ACTCATTATCATCAC
Found at i:99781439 original size:29 final size:30
Alignment explanation
Indices: 99781404--99781472 Score: 122
Period size: 29 Copynumber: 2.3 Consensus size: 30
99781394 AGATAATTGA
99781404 GATTGATTACAGTATATGATATGTAAATAT
1 GATTGATTACAGTATATGATATGTAAATAT
99781434 G-TTGATTACAGTATATGATATGTAAATAT
1 GATTGATTACAGTATATGATATGTAAATAT
*
99781463 GAATGATTAC
1 GATTGATTAC
99781473 CAAAAGCGTC
Statistics
Matches: 37, Mismatches: 1, Indels: 2
0.93 0.03 0.05
Matches are distributed among these distances:
29 29 0.78
30 8 0.22
ACGTcount: A:0.39, C:0.04, G:0.17, T:0.39
Consensus pattern (30 bp):
GATTGATTACAGTATATGATATGTAAATAT
Found at i:99795907 original size:40 final size:40
Alignment explanation
Indices: 99795549--99795893 Score: 527
Period size: 40 Copynumber: 8.7 Consensus size: 40
99795539 TTGAATGATG
* * * * *
99795549 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
** * *
99795589 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
99795629 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
99795668 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
99795708 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
99795748 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
99795788 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
99795828 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
* *
99795869 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGTTAAGTCCCGAAGGCATTTG
99795894 AACGAGTAGC
Statistics
Matches: 287, Mismatches: 13, Indels: 10
0.93 0.04 0.03
Matches are distributed among these distances:
39 35 0.12
40 242 0.84
41 10 0.03
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:99797600 original size:128 final size:128
Alignment explanation
Indices: 99797439--99797701 Score: 490
Period size: 128 Copynumber: 2.1 Consensus size: 128
99797429 GAATCATATT
99797439 TATATATGAGAATGTGTTAGAAAGGGGGTTCTTCTTTCTCTTTCTCTTTCTCTTCCTTAAGTAGA
1 TATATATGAGAATGTGTTAGAAAGGGGGTTCTTCTTTCTCTTTCTCTTTCTCTTCCTTAAGTAGA
99797504 ATTTACTGATACTCTTTTTAAGTCTGAATGTATCTATAAACTTGAAATTATATAGGGTTTTTC
66 ATTTACTGATACTCTTTTTAAGTCTGAATGTATCTATAAACTTGAAATTATATAGGGTTTTTC
* * *
99797567 TGTATATGAGAGTGTGTTAGAAAGGGGGTTCTTCTTTCTCTTTCTCTTTCTCTTCCTTAAGTGGA
1 TATATATGAGAATGTGTTAGAAAGGGGGTTCTTCTTTCTCTTTCTCTTTCTCTTCCTTAAGTAGA
*
99797632 ATTTACTGATACTCTTTTTAAGTCTGAATGTATCTATAAGCTTGAAATTATATAGGGTTTTTC
66 ATTTACTGATACTCTTTTTAAGTCTGAATGTATCTATAAACTTGAAATTATATAGGGTTTTTC
99797695 TATATAT
1 TATATAT
99797702 TTTTACCACC
Statistics
Matches: 130, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
128 130 1.00
ACGTcount: A:0.25, C:0.13, G:0.17, T:0.46
Consensus pattern (128 bp):
TATATATGAGAATGTGTTAGAAAGGGGGTTCTTCTTTCTCTTTCTCTTTCTCTTCCTTAAGTAGA
ATTTACTGATACTCTTTTTAAGTCTGAATGTATCTATAAACTTGAAATTATATAGGGTTTTTC
Found at i:99800238 original size:37 final size:37
Alignment explanation
Indices: 99800188--99800261 Score: 130
Period size: 37 Copynumber: 2.0 Consensus size: 37
99800178 CCAAAGTCGG
99800188 AACAGGAAATCCAGAAACCGTTCTAGACCTGTCTCAC
1 AACAGGAAATCCAGAAACCGTTCTAGACCTGTCTCAC
* *
99800225 AACAGGAAATCCAGAAACCGTTCTGGCCCTGTCTCAC
1 AACAGGAAATCCAGAAACCGTTCTAGACCTGTCTCAC
99800262 GAGAACCTGA
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 35 1.00
ACGTcount: A:0.32, C:0.31, G:0.18, T:0.19
Consensus pattern (37 bp):
AACAGGAAATCCAGAAACCGTTCTAGACCTGTCTCAC
Found at i:99801292 original size:39 final size:39
Alignment explanation
Indices: 99801170--99801393 Score: 229
Period size: 40 Copynumber: 5.6 Consensus size: 39
99801160 GCTACTCGTT
* * *
99801170 CAAACGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGTAACTCGCA
* * *
99801210 CAATTGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTAACTCGCA
* * *
99801250 CAAATGCCTTCGGGCTTAGCCCGAAATTAGTATCTCGTA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTAACTCGCA
*
99801289 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTAACTCGCA
* * * * *
99801328 CAAATGCCTTCGGATCTTAGTCCGG-ATCTGGTCACTTAGCA
1 CAAATGCCTTCGG-GCTTAGCCCGGAAT-TAGTAAC-TCGCA
99801369 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGG-CTTAGCCCGGA
99801394 CATCATTTAA
Statistics
Matches: 158, Mismatches: 20, Indels: 11
0.84 0.11 0.06
Matches are distributed among these distances:
39 72 0.46
40 76 0.48
41 10 0.06
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (39 bp):
CAAATGCCTTCGGGCTTAGCCCGGAATTAGTAACTCGCA
Found at i:99801353 original size:118 final size:120
Alignment explanation
Indices: 99801164--99801391 Score: 286
Period size: 118 Copynumber: 1.9 Consensus size: 120
99801154 GATATAGCTA
* * *
99801164 CTCGTTCAAACGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAATTGCCTTCGGGACTTA
1 CTCGTACAAACGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTA
* *
99801229 ACCCGGATTTAGTAAC-TCGCACAAATGCCTTCGGG-CTTAGCCCGAAATTAGTAT
66 ACCCGGATCTAGTAACTTAGCACAAA-GCCTTCGGGACTTAGCCCGAAATTAGTAT
* * *
99801283 CTCGTACAAATGCCTTCGGG-CTTAGCCCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCT
1 CTCGTACAAACGCCTTCGGGACATAGCCCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CT
** * *
99801345 TAGTCCGGATCTGGTCACTTAGCACAAAGCCTTCGGGACTTAGCCCG
64 TAACCCGGATCTAGTAACTTAGCACAAAGCCTTCGGGACTTAGCCCG
99801392 GACATCATTT
Statistics
Matches: 93, Mismatches: 12, Indels: 8
0.82 0.11 0.07
Matches are distributed among these distances:
117 4 0.04
118 54 0.58
119 35 0.38
ACGTcount: A:0.24, C:0.29, G:0.22, T:0.26
Consensus pattern (120 bp):
CTCGTACAAACGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTA
ACCCGGATCTAGTAACTTAGCACAAAGCCTTCGGGACTTAGCCCGAAATTAGTAT
Found at i:99808363 original size:79 final size:79
Alignment explanation
Indices: 99808270--99808424 Score: 256
Period size: 79 Copynumber: 2.0 Consensus size: 79
99808260 TAACACTATA
* ** *
99808270 CTCAAACATATATAAGCCATTTTTGCATGGCTATCCAAAATTATACAAGTCCAAAGGGTCCATGA
1 CTCAAACATATATAAGCCATTTTCGCATGGCTATCCAAAATTATACAAAACCAAAGGGTACATGA
*
99808335 CCCACAACAAACGG
66 CCAACAACAAACGG
*
99808349 CTCAAACATATATAAGCCATTTTCGCATGGCTATCCAAAATTATACAAAACCGAAGGGTACATGA
1 CTCAAACATATATAAGCCATTTTCGCATGGCTATCCAAAATTATACAAAACCAAAGGGTACATGA
99808414 CCAACAACAAA
66 CCAACAACAAA
99808425 AGGGTAGTCC
Statistics
Matches: 70, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
79 70 1.00
ACGTcount: A:0.41, C:0.25, G:0.13, T:0.22
Consensus pattern (79 bp):
CTCAAACATATATAAGCCATTTTCGCATGGCTATCCAAAATTATACAAAACCAAAGGGTACATGA
CCAACAACAAACGG
Found at i:99809433 original size:22 final size:22
Alignment explanation
Indices: 99809405--99809526 Score: 61
Period size: 22 Copynumber: 5.3 Consensus size: 22
99809395 TTCCACATCC
99809405 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCGGCCTT
** * * *
99809427 ATCACATATATACACTTTC-ACATT
1 ATCACAT-T-GGC-CATTCGGCCTT
99809451 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
* * * *
99809474 ATCTCATATATG-CATGTTC-ACATT
1 ATCACAT-T-GGCCA--TTCGGCCTT
99809498 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
99809521 ATCACA
1 ATCACA
99809527 CATACACATG
Statistics
Matches: 70, Mismatches: 18, Indels: 24
0.62 0.16 0.21
Matches are distributed among these distances:
22 26 0.37
23 12 0.17
24 12 0.17
25 20 0.29
ACGTcount: A:0.25, C:0.30, G:0.11, T:0.34
Consensus pattern (22 bp):
ATCACATTGGCCATTCGGCCTT
Found at i:99809440 original size:47 final size:47
Alignment explanation
Indices: 99809377--99809708 Score: 479
Period size: 47 Copynumber: 7.0 Consensus size: 47
99809367 CCCTTCGGGA
* * * * *
99809377 CTTATCACATTTATACACTTCCACATCCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
99809424 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * * *
99809471 CTTATCTCATATATGCA-TGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACT-TTCACATTCATCACATCGGCCATTAGGC
* *
99809518 CTTATCACACATACACA-TGTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACT-TTCACATTCATCACATCGGCCATTAGGC
*
99809565 CTTATCACATATATATACACTTTCACATTCATTACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
99809614 CTTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
99809661 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
99809708 C
1 C
99809709 ATTCATTACA
Statistics
Matches: 264, Mismatches: 17, Indels: 8
0.91 0.06 0.03
Matches are distributed among these distances:
46 1 0.00
47 221 0.84
49 41 0.16
50 1 0.00
ACGTcount: A:0.28, C:0.30, G:0.10, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:99809637 original size:143 final size:142
Alignment explanation
Indices: 99809377--99810044 Score: 583
Period size: 143 Copynumber: 4.5 Consensus size: 142
99809367 CCCTTCGGGA
* * * * *
99809377 CTTATCACATTTATACACTTCCACATCCATCACATTGGCCATTCGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
* * * *
99809442 TTTCACATTCATCACATTGGCCATTCGGCCTTATCTC-ATATATGCA-TGTTCACATTCATCACA
66 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACAATATATACACT-TTCACATTCATCACA
* *
99809505 TTGGCCATTCGGC
130 TCGGCCATTAGGC
* *
99809518 CTTATCACACATACACA-TGTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATA
1 CTTATCACATATATACACT-TTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATA
* *
99809582 CACTTTCACATTCATTACATCGGCCATTAGGCCTTGTCAC-ATATATACACTTTCACATTCATCA
63 CACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACAATATATACACTTTCACATTCATCA
99809646 CATCGGCCATTAGGC
128 CATCGGCCATTAGGC
*
99809661 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCATTCATTACAT-TGGCC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCC-TT-ATCACATAT----
* * * * * **
99809725 ATTAGGC-CTTATCACATAT-ATACACTTTC--ACATTCA-TCAC--ATCGGCCAT-TAGGC-CT
60 A-TA--CACTT-TCACAT-TCAT-CAC-ATCGGCCATT-AGGC-CTTATC-ACAATATATACACT
* * *
99809781 TATCACATATATATACACTTTC-ACATTCATTACATCGGC
115 T-TCACAT-T-CAT-CAC-ATCGGC---CATT--A--GGC
** *
99809820 CATTAGGCCTTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACAT
1 C-TTA-----TCACATA--TATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACAT
99809885 ATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACAT
58 ATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACA-ATATATACACTTTCACAT
*
99809950 TCATTACATCGGCCATTAGGC
122 TCATCACATCGGCCATTAGGC
*
99809971 CTTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
99810036 TTTCACATT
66 TTTCACATT
99810045 TATTCAAATA
Statistics
Matches: 425, Mismatches: 48, Indels: 106
0.73 0.08 0.18
Matches are distributed among these distances:
140 1 0.00
141 46 0.11
142 1 0.00
143 185 0.44
144 4 0.01
145 8 0.02
146 1 0.00
147 2 0.00
148 8 0.02
149 24 0.06
150 10 0.02
151 8 0.02
152 4 0.01
153 3 0.01
155 8 0.02
157 5 0.01
158 9 0.02
159 21 0.05
160 12 0.03
161 11 0.03
162 4 0.01
165 10 0.02
166 3 0.01
167 37 0.09
ACGTcount: A:0.29, C:0.29, G:0.09, T:0.33
Consensus pattern (142 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
TTTCACATTCATCACATCGGCCATTAGGCCTTATCACAATATATACACTTTCACATTCATCACAT
CGGCCATTAGGC
Found at i:99809714 original size:24 final size:24
Alignment explanation
Indices: 99809684--99809741 Score: 84
Period size: 24 Copynumber: 2.5 Consensus size: 24
99809674 TACACTTTCA
99809684 CATTCATCACATCGGCCATTAGGC
1 CATTCATCACATCGGCCATTAGGC
* *
99809708 CATTCATTACATTGGCCATTAGGC
1 CATTCATCACATCGGCCATTAGGC
99809732 C-TT-ATCACAT
1 CATTCATCACAT
99809742 ATATACACTT
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
22 6 0.19
23 2 0.06
24 23 0.74
ACGTcount: A:0.26, C:0.29, G:0.14, T:0.31
Consensus pattern (24 bp):
CATTCATCACATCGGCCATTAGGC
Found at i:99809725 original size:118 final size:119
Alignment explanation
Indices: 99809590--99809828 Score: 435
Period size: 118 Copynumber: 2.0 Consensus size: 119
99809580 TACACTTTCA
*
99809590 CATTCATTACATCGGCCATTAGGCCTTGTCACATATATACACTTTCACATTCATCACATCGGCCA
1 CATTCATTACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCA
99809655 TTAGGCCTTATCAC-ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
66 TTAGGCCTTATCACAATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
99809708 CATTCATTACATTGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCA
1 CATTCATTACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCA
*
99809773 TTAGGCCTTATCACATATATATACACTTTCACATTCATTACATCGGCCATTAGGC
66 TTAGGCCTTATCACA-ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
99809828 C
1 C
99809829 TTGTCACATA
Statistics
Matches: 116, Mismatches: 3, Indels: 2
0.96 0.02 0.02
Matches are distributed among these distances:
118 77 0.66
120 39 0.34
ACGTcount: A:0.28, C:0.29, G:0.10, T:0.32
Consensus pattern (119 bp):
CATTCATTACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCA
TTAGGCCTTATCACAATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:99809753 original size:71 final size:71
Alignment explanation
Indices: 99809637--99809788 Score: 272
Period size: 71 Copynumber: 2.2 Consensus size: 71
99809627 TACACTTTCA
99809637 CATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCA
1 CATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCA
99809702 TTAGGC
66 TTAGGC
* *
99809708 CATTCATTACATTGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCA
1 CATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCA
99809773 TTAGGC
66 TTAGGC
99809779 C-TT-ATCACAT
1 CATTCATCACAT
99809789 ATATATACAC
Statistics
Matches: 78, Mismatches: 3, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
69 6 0.08
70 2 0.03
71 70 0.90
ACGTcount: A:0.28, C:0.30, G:0.11, T:0.32
Consensus pattern (71 bp):
CATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCA
TTAGGC
Done.