Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr3
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 100348136
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 3062571 characters in sequence are not A, C, G, or T
File 289 of 290
Found at i:99809761 original size:47 final size:47
Alignment explanation
Indices: 99809708--99810044 Score: 584
Period size: 47 Copynumber: 7.1 Consensus size: 47
99809698 GCCATTAGGC
* *
99809708 CATTCATTACATTGGCCATTAGGCCTTATCACATATATACACTTTCA
1 CATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCA
99809755 CATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCA
1 CATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATACACTTTCA
* *
99809804 CATTCATTACATCGGCCATTAGGCCTTGTCACATATATACACTTTCA
1 CATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCA
99809851 CATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCA
1 CATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCA
99809898 CATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCA
1 CATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATACACTTTCA
* *
99809947 CATTCATTACATCGGCCATTAGGCCTTGTCACATATATACACTTTCA
1 CATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCA
99809994 CATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCA
1 CATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCA
99810041 CATT
1 CATT
99810045 TATTCAAATA
Statistics
Matches: 276, Mismatches: 10, Indels: 8
0.94 0.03 0.03
Matches are distributed among these distances:
47 186 0.67
49 90 0.33
ACGTcount: A:0.29, C:0.28, G:0.09, T:0.34
Consensus pattern (47 bp):
CATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCA
Found at i:99809821 original size:96 final size:94
Alignment explanation
Indices: 99809708--99810044 Score: 584
Period size: 96 Copynumber: 3.5 Consensus size: 94
99809698 GCCATTAGGC
* *
99809708 CATTCATTACATTGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCA
1 CATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCA
99809773 TTAGGCCTTATCACATATATATACACTTTCA
66 TTAGGCCTTATCAC--ATATATACACTTTCA
* *
99809804 CATTCATTACATCGGCCATTAGGCCTTGTCACATATATACACTTTCACATTCATCACATCGGCCA
1 CATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCA
99809869 TTAGGCCTTATCACATATATACACTTTCA
66 TTAGGCCTTATCACATATATACACTTTCA
*
99809898 CATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATTACATCGGC
1 CATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATACACTTTCACATTCATCACATCGGC
*
99809963 CATTAGGCCTTGTCACATATATACACTTTCA
64 CATTAGGCCTTATCACATATATACACTTTCA
99809994 CATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATT
1 CATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATT
99810045 TATTCAAATA
Statistics
Matches: 233, Mismatches: 6, Indels: 6
0.95 0.02 0.02
Matches are distributed among these distances:
94 64 0.27
96 169 0.73
ACGTcount: A:0.29, C:0.28, G:0.09, T:0.34
Consensus pattern (94 bp):
CATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCA
TTAGGCCTTATCACATATATACACTTTCA
Found at i:99823015 original size:47 final size:47
Alignment explanation
Indices: 99822827--99822990 Score: 301
Period size: 47 Copynumber: 3.5 Consensus size: 47
99822817 TCTATTTTCA
**
99822827 CCAATGTGATGAATGTGAACACACGTATGTGTGATAAGGCCGAATGG
1 CCAATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGG
*
99822874 CCAATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCAAATGG
1 CCAATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGG
99822921 CCAATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGG
1 CCAATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGG
99822968 CCAATGTGATGAATGTGAACATG
1 CCAATGTGATGAATGTGAACATG
99822991 TATATATGTC
Statistics
Matches: 113, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
47 113 1.00
ACGTcount: A:0.32, C:0.13, G:0.30, T:0.25
Consensus pattern (47 bp):
CCAATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGG
Found at i:99823061 original size:46 final size:46
Alignment explanation
Indices: 99823009--99823129 Score: 161
Period size: 46 Copynumber: 2.6 Consensus size: 46
99822999 TCGTAAGGCT
99823009 GAATGGCTAATGCGAAATGTGTATGAGATAGATATAAGGTAAAGCC
1 GAATGGCTAATGCGAAATGTGTATGAGATAGATATAAGGTAAAGCC
* * * **
99823055 GAATGGCTAATGCGAAACGTGTATGCGATGGATATGTGGTAAAGCC
1 GAATGGCTAATGCGAAATGTGTATGAGATAGATATAAGGTAAAGCC
* * * *
99823101 AAATGGCTAATGTGAGATATGTATGAGAT
1 GAATGGCTAATGCGAAATGTGTATGAGAT
99823130 GTGTATATAT
Statistics
Matches: 64, Mismatches: 11, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
46 64 1.00
ACGTcount: A:0.36, C:0.09, G:0.30, T:0.26
Consensus pattern (46 bp):
GAATGGCTAATGCGAAATGTGTATGAGATAGATATAAGGTAAAGCC
Found at i:99824072 original size:14 final size:14
Alignment explanation
Indices: 99824053--99824079 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
99824043 AGGGAATAGA
99824053 AACATTGCCAGATG
1 AACATTGCCAGATG
99824067 AACATTGCCAGAT
1 AACATTGCCAGAT
99824080 TGGAGCCGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.37, C:0.22, G:0.19, T:0.22
Consensus pattern (14 bp):
AACATTGCCAGATG
Found at i:99842579 original size:24 final size:24
Alignment explanation
Indices: 99842498--99842671 Score: 237
Period size: 23 Copynumber: 7.3 Consensus size: 24
99842488 NNNNNNNNNN
99842498 CCCTTTTAATAACTGGGGCATAAG
1 CCCTTTTAATAACTGGGGCATAAG
99842522 CCC-TTTAATAACTGGGGCATAAG
1 CCCTTTTAATAACTGGGGCATAAG
* * **
99842545 -TCTTTTAATAACTAGGGTGTAAG
1 CCCTTTTAATAACTGGGGCATAAG
* *
99842568 CCCTTTTGATAACTAGGGCATAAG
1 CCCTTTTAATAACTGGGGCATAAG
99842592 CCC-TTTAATAACTGGGGCATAAG
1 CCCTTTTAATAACTGGGGCATAAG
* * *
99842615 CCCTTTTGATAACTAGGGCGTAAG
1 CCCTTTTAATAACTGGGGCATAAG
99842639 CCCTTTTTAATAACTGGGGCATAAG
1 CCC-TTTTAATAACTGGGGCATAAG
99842664 CCCTTTTA
1 CCCTTTTA
99842672 CACTTCCTCC
Statistics
Matches: 130, Mismatches: 16, Indels: 8
0.84 0.10 0.05
Matches are distributed among these distances:
22 1 0.01
23 58 0.45
24 50 0.38
25 21 0.16
ACGTcount: A:0.28, C:0.20, G:0.21, T:0.31
Consensus pattern (24 bp):
CCCTTTTAATAACTGGGGCATAAG
Found at i:99842599 original size:47 final size:47
Alignment explanation
Indices: 99842502--99842670 Score: 241
Period size: 47 Copynumber: 3.6 Consensus size: 47
99842492 NNNNNNCCCT
* * * *
99842502 TTTAATAACTGGGGCATAAGCCC-TTTAATAACTGGGGCATAAGTCT
1 TTTAATAACTGGGGCATAAGCCCTTTTGATAACTAGGGCATAAGCCC
* **
99842548 TTTAATAACTAGGGTGTAAGCCCTTTTGATAACTAGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCCTTTTGATAACTAGGGCATAAGCCC
*
99842595 TTTAATAACTGGGGCATAAGCCCTTTTGATAACTAGGGCGTAAGCCC
1 TTTAATAACTGGGGCATAAGCCCTTTTGATAACTAGGGCATAAGCCC
99842642 TTTTTAATAACTGGGGCATAAGCCCTTTT
1 --TTTAATAACTGGGGCATAAGCCCTTTT
99842671 ACACTTCCTC
Statistics
Matches: 109, Mismatches: 11, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
46 20 0.18
47 62 0.57
49 27 0.25
ACGTcount: A:0.28, C:0.19, G:0.21, T:0.31
Consensus pattern (47 bp):
TTTAATAACTGGGGCATAAGCCCTTTTGATAACTAGGGCATAAGCCC
Found at i:99842745 original size:20 final size:20
Alignment explanation
Indices: 99842720--99842786 Score: 116
Period size: 20 Copynumber: 3.4 Consensus size: 20
99842710 TTATGAATAC
99842720 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
99842740 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
99842760 GTCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
99842780 ACCATGT
1 ATCATGT
99842787 TTATCAAAAT
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 44 1.00
ACGTcount: A:0.33, C:0.21, G:0.12, T:0.34
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:99842751 original size:11 final size:11
Alignment explanation
Indices: 99842720--99842775 Score: 57
Period size: 11 Copynumber: 5.5 Consensus size: 11
99842710 TTATGAATAC
99842720 ATCATGTGCAT
1 ATCATGTGCAT
*
99842731 ATCA--TACAT
1 ATCATGTGCAT
99842740 ATCATGTGCAT
1 ATCATGTGCAT
*
99842751 ATCA--TACAT
1 ATCATGTGCAT
*
99842760 GTCATGTGCAT
1 ATCATGTGCAT
99842771 ATCAT
1 ATCAT
99842776 ACATACCATG
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
9 15 0.43
11 20 0.57
ACGTcount: A:0.32, C:0.20, G:0.12, T:0.36
Consensus pattern (11 bp):
ATCATGTGCAT
Found at i:99842855 original size:25 final size:25
Alignment explanation
Indices: 99842823--99842870 Score: 78
Period size: 25 Copynumber: 1.9 Consensus size: 25
99842813 ATATTTAAAC
* *
99842823 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAATGGTCATTTTTA
99842848 CCTAGGGGCAAAATGGTCATTTT
1 CCTAGGGGCAAAATGGTCATTTT
99842871 CATTTTATAA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.25, C:0.15, G:0.25, T:0.35
Consensus pattern (25 bp):
CCTAGGGGCAAAATGGTCATTTTTA
Found at i:99847597 original size:14 final size:13
Alignment explanation
Indices: 99847577--99847608 Score: 55
Period size: 14 Copynumber: 2.4 Consensus size: 13
99847567 AATATTTAAC
99847577 TTGTTCTTAATTA
1 TTGTTCTTAATTA
99847590 TGTGTTCTTAATTA
1 T-TGTTCTTAATTA
99847604 TTGTT
1 TTGTT
99847609 TTGATATCCC
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 5 0.28
14 13 0.72
ACGTcount: A:0.19, C:0.06, G:0.12, T:0.62
Consensus pattern (13 bp):
TTGTTCTTAATTA
Found at i:99882409 original size:134 final size:134
Alignment explanation
Indices: 99882169--99882441 Score: 537
Period size: 134 Copynumber: 2.0 Consensus size: 134
99882159 TCTGAGCATG
99882169 CCGAGCATTTGAGAATTGTACTACAGACTCTACGGTATAAGTAGTTGTATGAAAAATTCAGCAAA
1 CCGAGCATTTGAGAATTGTACTACAGACTCTACGGTATAAGTAGTTGTATGAAAAATTCAGCAAA
99882234 TGTGAATTTTGGTTATACGAGGTTGGTTTTCTGGGGCATATAGTTTCAGCTGCGGGTATTCAAGT
66 TGTGAATTTTGGTTATACGAGGTTGGTTTTCTGGGGCATATAGTTTCAGCTGCGGGTATTCAAGT
99882299 TGAC
131 TGAC
*
99882303 CCGAGCATTTGAGAATTGTACTATAGACTCTACGGTATAAGTAGTTGTATGAAAAATTCAGCAAA
1 CCGAGCATTTGAGAATTGTACTACAGACTCTACGGTATAAGTAGTTGTATGAAAAATTCAGCAAA
99882368 TGTGAATTTTGGTTATACGAGGTTGGTTTTCTGGGGCATATAGTTTCAGCTGCGGGTATTCAAGT
66 TGTGAATTTTGGTTATACGAGGTTGGTTTTCTGGGGCATATAGTTTCAGCTGCGGGTATTCAAGT
99882433 TGAC
131 TGAC
99882437 CCGAG
1 CCGAG
99882442 TAAGAAATTT
Statistics
Matches: 138, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
134 138 1.00
ACGTcount: A:0.27, C:0.14, G:0.26, T:0.33
Consensus pattern (134 bp):
CCGAGCATTTGAGAATTGTACTACAGACTCTACGGTATAAGTAGTTGTATGAAAAATTCAGCAAA
TGTGAATTTTGGTTATACGAGGTTGGTTTTCTGGGGCATATAGTTTCAGCTGCGGGTATTCAAGT
TGAC
Found at i:99885528 original size:17 final size:17
Alignment explanation
Indices: 99885502--99885535 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
99885492 CCTAAAAGAA
99885502 AAAAAATGGATTTAGAT
1 AAAAAATGGATTTAGAT
*
99885519 AAAAATTGGATTTAGAT
1 AAAAAATGGATTTAGAT
99885536 CGGGGTTGAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.50, C:0.00, G:0.18, T:0.32
Consensus pattern (17 bp):
AAAAAATGGATTTAGAT
Found at i:99886702 original size:22 final size:20
Alignment explanation
Indices: 99886677--99886725 Score: 53
Period size: 22 Copynumber: 2.2 Consensus size: 20
99886667 TGAATGTAAG
99886677 TTTGATGATTTTGGCATATAGA
1 TTTGATG-TTTTGGC-TATAGA
*
99886699 TTTGGTATGTTTTGGCTATGGA
1 TTT-G-ATGTTTTGGCTATAGA
99886721 TTTGA
1 TTTGA
99886726 GTAGTTAAGA
Statistics
Matches: 24, Mismatches: 1, Indels: 6
0.77 0.03 0.19
Matches are distributed among these distances:
20 1 0.04
21 1 0.04
22 11 0.46
23 8 0.33
24 3 0.12
ACGTcount: A:0.20, C:0.04, G:0.27, T:0.49
Consensus pattern (20 bp):
TTTGATGTTTTGGCTATAGA
Found at i:99891791 original size:20 final size:20
Alignment explanation
Indices: 99891763--99891821 Score: 64
Period size: 20 Copynumber: 3.0 Consensus size: 20
99891753 CATCATTTAA
*
99891763 AAATGATTTTAACTTGATTG
1 AAATCATTTTAACTTGATTG
* * *
99891783 AAATCATTTTGACTTGGTTT
1 AAATCATTTTAACTTGATTG
**
99891803 AAATCATTTGCACTTGATT
1 AAATCATTTTAACTTGATT
99891822 TTTAAATTGT
Statistics
Matches: 32, Mismatches: 7, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
20 32 1.00
ACGTcount: A:0.31, C:0.10, G:0.14, T:0.46
Consensus pattern (20 bp):
AAATCATTTTAACTTGATTG
Found at i:99900259 original size:27 final size:27
Alignment explanation
Indices: 99900229--99900426 Score: 281
Period size: 27 Copynumber: 7.3 Consensus size: 27
99900219 TACTGAAATG
** *
99900229 CCCTCGATTTGTAGAATTACCATTTTA
1 CCCTCGATTTACAGAATTACCGTTTTA
* *
99900256 CCCTCGATTTATAGAATTACCGTTTCA
1 CCCTCGATTTACAGAATTACCGTTTTA
*
99900283 CCCTCGATTTACAAAATTACCGTTTTA
1 CCCTCGATTTACAGAATTACCGTTTTA
* *
99900310 CCCTCGATTTATAGAATTACCATTTTA
1 CCCTCGATTTACAGAATTACCGTTTTA
99900337 CCCTCGATTTACAGAATTACCGTTTTA
1 CCCTCGATTTACAGAATTACCGTTTTA
* *
99900364 CCCTCGATTTACAAAATTACCATTTTA
1 CCCTCGATTTACAGAATTACCGTTTTA
*
99900391 CCCTC-AGTTTACAAAATTACCGTTTTA
1 CCCTCGA-TTTACAGAATTACCGTTTTA
99900418 CCCTCGATT
1 CCCTCGATT
99900427 GTGAAATTAC
Statistics
Matches: 155, Mismatches: 14, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
26 1 0.01
27 153 0.99
28 1 0.01
ACGTcount: A:0.28, C:0.26, G:0.09, T:0.38
Consensus pattern (27 bp):
CCCTCGATTTACAGAATTACCGTTTTA
Found at i:99900344 original size:81 final size:81
Alignment explanation
Indices: 99900229--99900426 Score: 317
Period size: 81 Copynumber: 2.4 Consensus size: 81
99900219 TACTGAAATG
* *
99900229 CCCTCGATTTGTAGAATTACCATTTTACCCTCGATTTATAGAATTACCGTTTCACCCTCGATTTA
1 CCCTCGATTTATAGAATTACCATTTTACCCTCGATTTACAGAATTACCGTTTCACCCTCGATTTA
*
99900294 CAAAATTACCGTTTTA
66 CAAAATTACCATTTTA
*
99900310 CCCTCGATTTATAGAATTACCATTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTTA
1 CCCTCGATTTATAGAATTACCATTTTACCCTCGATTTACAGAATTACCGTTTCACCCTCGATTTA
99900375 CAAAATTACCATTTTA
66 CAAAATTACCATTTTA
* * *
99900391 CCCTC-AGTTTACAAAATTACCGTTTTACCCTCGATT
1 CCCTCGA-TTTATAGAATTACCATTTTACCCTCGATT
99900427 GTGAAATTAC
Statistics
Matches: 109, Mismatches: 7, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
80 1 0.01
81 108 0.99
ACGTcount: A:0.28, C:0.26, G:0.09, T:0.38
Consensus pattern (81 bp):
CCCTCGATTTATAGAATTACCATTTTACCCTCGATTTACAGAATTACCGTTTCACCCTCGATTTA
CAAAATTACCATTTTA
Found at i:99900448 original size:27 final size:26
Alignment explanation
Indices: 99900418--99900608 Score: 147
Period size: 27 Copynumber: 7.1 Consensus size: 26
99900408 TACCGTTTTA
* **
99900418 CCCTCGATTGTGAAATTACTGAAATAC
1 CCCT-GATTGTAAAATTACCAAAATAC
* *
99900445 CCCTG-TAGGATAGAATTACCAAAATAC
1 CCCTGAT-TG-TAAAATTACCAAAATAC
*
99900472 CCCTAGTTTGTAAAATTACCAAAATAC
1 CCCT-GATTGTAAAATTACCAAAATAC
*
99900499 CCCTAGTTTGTAAAATTACCAAAATAC
1 CCCT-GATTGTAAAATTACCAAAATAC
* * * *
99900526 CACTGGTTTGTGAAATTACCGAAATA-
1 CCCT-GATTGTAAAATTACCAAAATAC
*
99900552 CCCTCAATTTGTAAAATTACCAAAATAC
1 CCCT-GA-TTGTAAAATTACCAAAATAC
99900580 CCCTGATT-TACAAAATTA-CAGAAATAC
1 CCCTGATTGT--AAAATTACCA-AAATAC
99900607 CC
1 CC
99900609 TTGACTTTCT
Statistics
Matches: 137, Mismatches: 18, Indels: 18
0.79 0.10 0.10
Matches are distributed among these distances:
25 2 0.01
26 9 0.07
27 119 0.87
28 6 0.04
29 1 0.01
ACGTcount: A:0.39, C:0.23, G:0.10, T:0.28
Consensus pattern (26 bp):
CCCTGATTGTAAAATTACCAAAATAC
Found at i:99900499 original size:54 final size:54
Alignment explanation
Indices: 99900425--99900580 Score: 181
Period size: 54 Copynumber: 2.9 Consensus size: 54
99900415 TTACCCTCGA
* * *
99900425 TTGTGAAATTACTGAAATACCCCT-GTAGGATAGAATTACCAAAATACCCCTAGT
1 TTGTGAAATTACCGAAATACCCCTAGTAGG-TAAAATTACCAAAATACCACTAGT
* * ** *
99900479 TTGTAAAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCACTGGT
1 TTGTGAAATTACCGAAATACCCCTAGTAGGTAAAATTACCAAAATACCACTAGT
* **
99900533 TTGTGAAATTACCGAAATA-CCCTCAATTTGTAAAATTACCAAAATACC
1 TTGTGAAATTACCGAAATACCCCT-AGTAGGTAAAATTACCAAAATACC
99900581 CCTGATTTAC
Statistics
Matches: 89, Mismatches: 11, Indels: 4
0.86 0.11 0.04
Matches are distributed among these distances:
53 4 0.04
54 82 0.92
55 3 0.03
ACGTcount: A:0.40, C:0.21, G:0.11, T:0.29
Consensus pattern (54 bp):
TTGTGAAATTACCGAAATACCCCTAGTAGGTAAAATTACCAAAATACCACTAGT
Found at i:99900595 original size:81 final size:81
Alignment explanation
Indices: 99900458--99900607 Score: 216
Period size: 81 Copynumber: 1.9 Consensus size: 81
99900448 TGTAGGATAG
* **
99900458 AATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCCTAGTTTGTAAAATTACCA-AA
1 AATTACCAAAATACCCCTAATTTGTAAAATTACCAAAATACCCCTAGTTTACAAAATTA-CAGAA
99900522 ATACCACTGGTTTGTGA
65 ATACCACTGGTTTGTGA
*
99900539 AATTACCGAAATA-CCCTCAATTTGTAAAATTACCAAAATACCCCT-GATTTACAAAATTACAGA
1 AATTACCAAAATACCCCT-AATTTGTAAAATTACCAAAATACCCCTAG-TTTACAAAATTACAGA
99900602 AATACC
64 AATACC
99900608 CTTGACTTTC
Statistics
Matches: 62, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
80 7 0.11
81 55 0.89
ACGTcount: A:0.42, C:0.22, G:0.08, T:0.28
Consensus pattern (81 bp):
AATTACCAAAATACCCCTAATTTGTAAAATTACCAAAATACCCCTAGTTTACAAAATTACAGAAA
TACCACTGGTTTGTGA
Found at i:99900596 original size:54 final size:54
Alignment explanation
Indices: 99900458--99900663 Score: 184
Period size: 54 Copynumber: 3.8 Consensus size: 54
99900448 TGTAGGATAG
* ** * *
99900458 AATTACCAAAATACCCCT-AGTTTGTAAAATTACCAAAATACCC-CTAGTTTGTAA
1 AATTACCAAAATACCACTGA-TTTACAAAATTACCGAAATACCCTC-AATTTGTAA
* ***
99900512 AATTACCAAAATACCACTGGTTTGTGAAATTACCGAAATACCCTCAATTTGTAA
1 AATTACCAAAATACCACTGATTTACAAAATTACCGAAATACCCTCAATTTGTAA
* * * * *
99900566 AATTACCAAAATACCCCTGATTTACAAAATTACAGAAATACCCTTGACTTTCTAAA
1 AATTACCAAAATACCACTGATTTACAAAATTACCGAAATACCC-TCAATTTGT-AA
* * * *
99900622 AATTA-TAGAAATACCATTGGTTTACAAAATTACTGAAATACC
1 AATTACCA-AAATACCACTGATTTACAAAATTACCGAAATACC
99900664 ATTGGTTTGT
Statistics
Matches: 128, Mismatches: 19, Indels: 8
0.83 0.12 0.05
Matches are distributed among these distances:
54 83 0.65
55 8 0.06
56 37 0.29
ACGTcount: A:0.42, C:0.20, G:0.08, T:0.30
Consensus pattern (54 bp):
AATTACCAAAATACCACTGATTTACAAAATTACCGAAATACCCTCAATTTGTAA
Found at i:99900681 original size:27 final size:27
Alignment explanation
Indices: 99900586--99900671 Score: 95
Period size: 27 Copynumber: 3.1 Consensus size: 27
99900576 ATACCCCTGA
* * *
99900586 TTTACAAAATTACAGAAATACCCTTGAC
1 TTTACAAAATTACTGAAATACCATTG-G
99900614 TTT-CTAAAAATTA-TAGAAATACCATTGG
1 TTTAC--AAAATTACT-GAAATACCATTGG
99900642 TTTACAAAATTACTGAAATACCATTGG
1 TTTACAAAATTACTGAAATACCATTGG
99900669 TTT
1 TTT
99900672 GTAGATTTAC
Statistics
Matches: 50, Mismatches: 3, Indels: 11
0.78 0.05 0.17
Matches are distributed among these distances:
27 24 0.48
28 7 0.14
29 19 0.38
ACGTcount: A:0.41, C:0.15, G:0.09, T:0.35
Consensus pattern (27 bp):
TTTACAAAATTACTGAAATACCATTGG
Found at i:99900755 original size:27 final size:27
Alignment explanation
Indices: 99900712--99900785 Score: 71
Period size: 27 Copynumber: 2.7 Consensus size: 27
99900702 AAATGACTAA
*
99900712 AATACCCCTAATA-GGTAAAAAGACCGT
1 AATACCCCT-GTAGGGTAAAAAGACCGT
**
99900739 AA-AGCCCCTGTAGGGTAAAGTGACCGT
1 AATA-CCCCTGTAGGGTAAAAAGACCGT
* *
99900766 AATACCCTTGTATGGTAAAA
1 AATACCCCTGTAGGGTAAAA
99900786 TGACGAATAT
Statistics
Matches: 38, Mismatches: 6, Indels: 6
0.76 0.12 0.12
Matches are distributed among these distances:
26 3 0.08
27 34 0.89
28 1 0.03
ACGTcount: A:0.38, C:0.20, G:0.20, T:0.22
Consensus pattern (27 bp):
AATACCCCTGTAGGGTAAAAAGACCGT
Found at i:99900789 original size:27 final size:27
Alignment explanation
Indices: 99900725--99900789 Score: 78
Period size: 27 Copynumber: 2.4 Consensus size: 27
99900715 ACCCCTAATA
*
99900725 GGTAAAAAGACCGTAAAGCCCCTGTAG
1 GGTAAAATGACCGTAAAGCCCCTGTAG
* * *
99900752 GGTAAAGTGACCGTAATA-CCCTTGTAT
1 GGTAAAATGACCGTAA-AGCCCCTGTAG
99900779 GGTAAAATGAC
1 GGTAAAATGAC
99900790 GAATATGCCC
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
27 31 0.97
28 1 0.03
ACGTcount: A:0.35, C:0.18, G:0.25, T:0.22
Consensus pattern (27 bp):
GGTAAAATGACCGTAAAGCCCCTGTAG
Found at i:99902574 original size:16 final size:15
Alignment explanation
Indices: 99902518--99902567 Score: 75
Period size: 16 Copynumber: 3.3 Consensus size: 15
99902508 TAATTACTGA
99902518 TATATAAATAT-AATT
1 TATAT-AATATGAATT
99902533 TATATAATATGAATT
1 TATATAATATGAATT
99902548 TATGATAATATGAATT
1 TAT-ATAATATGAATT
99902564 TATA
1 TATA
99902568 ATGATATTAT
Statistics
Matches: 33, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
14 5 0.15
15 13 0.39
16 15 0.45
ACGTcount: A:0.48, C:0.00, G:0.06, T:0.46
Consensus pattern (15 bp):
TATATAATATGAATT
Found at i:99903054 original size:15 final size:14
Alignment explanation
Indices: 99903020--99903064 Score: 65
Period size: 15 Copynumber: 3.2 Consensus size: 14
99903010 AATATAAAAC
99903020 AAATAAAA-TAAAT
1 AAATAAAAGTAAAT
99903033 AAATAAAAGTAAAT
1 AAATAAAAGTAAAT
*
99903047 ATAATAAAAGGAAAT
1 A-AATAAAAGTAAAT
99903062 AAA
1 AAA
99903065 AGGAAAAGAA
Statistics
Matches: 29, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
13 8 0.28
14 8 0.28
15 13 0.45
ACGTcount: A:0.73, C:0.00, G:0.07, T:0.20
Consensus pattern (14 bp):
AAATAAAAGTAAAT
Found at i:99904098 original size:24 final size:23
Alignment explanation
Indices: 99904071--99904125 Score: 62
Period size: 23 Copynumber: 2.5 Consensus size: 23
99904061 AGGATTTATA
99904071 ATATTCCGCGTGTGTTTGGGCTGG
1 ATATTCCGCGTGTGTTTGGG-TGG
* *
99904095 ATATTCTG-GCGTGTTTGGGTGG
1 ATATTCCGCGTGTGTTTGGGTGG
99904117 A-A-TCCGCGT
1 ATATTCCGCGT
99904126 ATCTGTCAGA
Statistics
Matches: 26, Mismatches: 4, Indels: 5
0.74 0.11 0.14
Matches are distributed among these distances:
20 3 0.12
21 2 0.08
22 4 0.15
23 10 0.38
24 7 0.27
ACGTcount: A:0.11, C:0.16, G:0.36, T:0.36
Consensus pattern (23 bp):
ATATTCCGCGTGTGTTTGGGTGG
Found at i:99910234 original size:16 final size:15
Alignment explanation
Indices: 99910179--99910227 Score: 73
Period size: 16 Copynumber: 3.2 Consensus size: 15
99910169 AATTAATGAC
99910179 ATATAAATAT-AATTT
1 ATAT-AATATGAATTT
99910194 ATATAATATGAATTT
1 ATATAATATGAATTT
99910209 ATGATAATATGAATTT
1 AT-ATAATATGAATTT
99910225 ATA
1 ATA
99910228 ATGATATTAT
Statistics
Matches: 32, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
14 5 0.16
15 12 0.38
16 15 0.47
ACGTcount: A:0.49, C:0.00, G:0.06, T:0.45
Consensus pattern (15 bp):
ATATAATATGAATTT
Found at i:99910691 original size:14 final size:15
Alignment explanation
Indices: 99910672--99910729 Score: 68
Period size: 15 Copynumber: 4.1 Consensus size: 15
99910662 AATTATTAAT
99910672 ATAAAA-CAAATAAA
1 ATAAAAGCAAATAAA
*
99910686 ATAAAA-TAAAT-AA
1 ATAAAAGCAAATAAA
*
99910699 ATAAAAGCAAATAGA
1 ATAAAAGCAAATAAA
*
99910714 ATAAAAGGAAATAAA
1 ATAAAAGCAAATAAA
99910729 A
1 A
99910730 GGAAAAAGAA
Statistics
Matches: 37, Mismatches: 5, Indels: 3
0.82 0.11 0.07
Matches are distributed among these distances:
13 8 0.22
14 14 0.38
15 15 0.41
ACGTcount: A:0.74, C:0.03, G:0.07, T:0.16
Consensus pattern (15 bp):
ATAAAAGCAAATAAA
Found at i:99911789 original size:23 final size:23
Alignment explanation
Indices: 99911752--99911798 Score: 69
Period size: 23 Copynumber: 2.0 Consensus size: 23
99911742 AGGATTTATA
99911752 ATATTCCGCGTGTGTTTGGGCTGG
1 ATATTCCGCGTGTGTTTGGG-TGG
*
99911776 ATATTCTG-GTGTGTTTGGGTGG
1 ATATTCCGCGTGTGTTTGGGTGG
99911798 A
1 A
99911799 ATCTGTGTAT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
22 4 0.18
23 11 0.50
24 7 0.32
ACGTcount: A:0.11, C:0.11, G:0.38, T:0.40
Consensus pattern (23 bp):
ATATTCCGCGTGTGTTTGGGTGG
Found at i:99917896 original size:16 final size:16
Alignment explanation
Indices: 99917862--99917896 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
99917852 ATTTATATAG
* *
99917862 TATGAATTTATGATTA
1 TATGAATTTATAATGA
99917878 TATGAATTTATAATGA
1 TATGAATTTATAATGA
99917894 TAT
1 TAT
99917897 TATATTATTA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.40, C:0.00, G:0.11, T:0.49
Consensus pattern (16 bp):
TATGAATTTATAATGA
Found at i:99918379 original size:15 final size:15
Alignment explanation
Indices: 99918354--99918390 Score: 58
Period size: 15 Copynumber: 2.5 Consensus size: 15
99918344 GAAATAAAAT
99918354 AAATA-AATAAAAGG
1 AAATAGAATAAAAGG
99918368 AAATAGAATAAAAGG
1 AAATAGAATAAAAGG
*
99918383 AAAAAGAA
1 AAATAGAA
99918391 ACAAAAGCTA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
14 5 0.24
15 16 0.76
ACGTcount: A:0.73, C:0.00, G:0.16, T:0.11
Consensus pattern (15 bp):
AAATAGAATAAAAGG
Found at i:99923550 original size:17 final size:17
Alignment explanation
Indices: 99923528--99923560 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
99923518 AAAAGAAGGG
99923528 CTGATTCCTTTAATGTC
1 CTGATTCCTTTAATGTC
99923545 CTGATTCCTTTAATGT
1 CTGATTCCTTTAATGT
99923561 TAGAAATTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.18, C:0.21, G:0.12, T:0.48
Consensus pattern (17 bp):
CTGATTCCTTTAATGTC
Found at i:99935851 original size:62 final size:62
Alignment explanation
Indices: 99935752--99935874 Score: 192
Period size: 62 Copynumber: 2.0 Consensus size: 62
99935742 TGCACCTCTC
* * *
99935752 GCAGTATAGATTGCCTCAAATCAGAATTCTTCGGTACACAAACTCTCCTACGGAAATAGAGG
1 GCAGTACAGATTGCCTCAAATCAGAATTCTTCAGTACACAAACTCTCCCACGGAAATAGAGG
* * *
99935814 GCAGTACAGATTGCCTCAAATCAGTATTCTTCAGTACACATATTCTCCCACGGAAATAGAG
1 GCAGTACAGATTGCCTCAAATCAGAATTCTTCAGTACACAAACTCTCCCACGGAAATAGAG
99935875 CACCCTTTCG
Statistics
Matches: 55, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
62 55 1.00
ACGTcount: A:0.33, C:0.24, G:0.18, T:0.25
Consensus pattern (62 bp):
GCAGTACAGATTGCCTCAAATCAGAATTCTTCAGTACACAAACTCTCCCACGGAAATAGAGG
Found at i:99940332 original size:43 final size:43
Alignment explanation
Indices: 99940279--99940365 Score: 165
Period size: 43 Copynumber: 2.0 Consensus size: 43
99940269 ATGCTTTGAT
*
99940279 TCTCTAATTCCTTAAAGTCTAACAATCAATGCCTAAATGCCTA
1 TCTCTAATTCCTTAAAGTCTAACAATCAATGCATAAATGCCTA
99940322 TCTCTAATTCCTTAAAGTCTAACAATCAATGCATAAATGCCTA
1 TCTCTAATTCCTTAAAGTCTAACAATCAATGCATAAATGCCTA
99940365 T
1 T
99940366 GTTTTAATTC
Statistics
Matches: 43, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
43 43 1.00
ACGTcount: A:0.36, C:0.24, G:0.07, T:0.33
Consensus pattern (43 bp):
TCTCTAATTCCTTAAAGTCTAACAATCAATGCATAAATGCCTA
Found at i:99940358 original size:21 final size:21
Alignment explanation
Indices: 99940291--99940358 Score: 50
Period size: 21 Copynumber: 3.2 Consensus size: 21
99940281 TCTAATTCCT
*
99940291 TAAAGTCTAACAATCAATGCC
1 TAAAGTCTAACAATCAATGCA
* * * *
99940312 TAAATGCCTATC--TCTAATTCCT
1 TAAA-GTCTAACAATC-AA-TGCA
99940334 TAAAGTCTAACAATCAATGCA
1 TAAAGTCTAACAATCAATGCA
99940355 TAAA
1 TAAA
99940359 TGCCTATGTT
Statistics
Matches: 34, Mismatches: 8, Indels: 10
0.65 0.15 0.19
Matches are distributed among these distances:
20 2 0.06
21 17 0.50
22 13 0.38
23 2 0.06
ACGTcount: A:0.41, C:0.22, G:0.07, T:0.29
Consensus pattern (21 bp):
TAAAGTCTAACAATCAATGCA
Found at i:99947178 original size:13 final size:13
Alignment explanation
Indices: 99947160--99947185 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
99947150 GCTTGACAGG
99947160 GACACGCCCGTGT
1 GACACGCCCGTGT
99947173 GACACGCCCGTGT
1 GACACGCCCGTGT
99947186 TTGATTGCTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.15, C:0.38, G:0.31, T:0.15
Consensus pattern (13 bp):
GACACGCCCGTGT
Found at i:99950146 original size:27 final size:26
Alignment explanation
Indices: 99950129--99950448 Score: 243
Period size: 27 Copynumber: 11.8 Consensus size: 26
99950119 TTACACTACA
99950129 AGGGTATTTCGATAATTTTACAAATCG
1 AGGGTATTTCGATAATTTTACAAA-CG
* *
99950156 GGGGTATTT-TATTAATTTTACAAATCG
1 AGGGTATTTCGA-TAATTTTACAAA-CG
* * * *
99950183 AGGGTATTTTGGTAATTTAACAATTCG
1 AGGGTATTTCGATAATTTTACAA-ACG
* *
99950210 AGAGTATTTCGCTAATTTTACAAACTG
1 AGGGTATTTCGATAATTTTACAAAC-G
*
99950237 -GAGGTATTTC-AGTAATTCTACAAAACTG
1 AG-GGTATTTCGA-TAATTTTAC-AAAC-G
* * *
99950265 AAGGTATTTCGGTAATTTTACAAATTG
1 AGGGTATTTCGATAATTTTACAAA-CG
** * *
99950292 AGGGTATTTTAATAATTTTACAATTCA
1 AGGGTATTTCGATAATTTTACAA-ACG
*
99950319 AGGGTATTTCGATAATTTTACAAATTTG
1 AGGGTATTTCGATAATTTTACAAA--CG
* *
99950347 -GGGTATTTCGACAATTCTACAAATCG
1 AGGGTATTTCGATAATTTTACAAA-CG
* * *
99950373 GGGGTATTTCGGTAATTTTACAATTCG
1 AGGGTATTTCGATAATTTTACAA-ACG
*
99950400 AGGGTATTTCGATAATTTTACAAACT
1 AGGGTATTTCGATAATTTTACAAACG
* *
99950426 AGGGTTATTTTGATAATTCTACA
1 AGGG-TATTTCGATAATTTTACA
99950449 TACCGGGGTC
Statistics
Matches: 233, Mismatches: 44, Indels: 32
0.75 0.14 0.10
Matches are distributed among these distances:
26 10 0.04
27 201 0.86
28 22 0.09
ACGTcount: A:0.32, C:0.11, G:0.18, T:0.39
Consensus pattern (26 bp):
AGGGTATTTCGATAATTTTACAAACG
Found at i:99950162 original size:54 final size:54
Alignment explanation
Indices: 99950129--99950423 Score: 308
Period size: 54 Copynumber: 5.4 Consensus size: 54
99950119 TTACACTACA
* ***
99950129 AGGGTATTTCGATAATTTTACAAATCGGGGGTATTTTATTAATTTTACAAATCG
1 AGGGTATTTCGATAATTTTACAAATCGAGGGTATTTCGGTAATTTTACAAATCG
* * * * * * *
99950183 AGGGTATTTTGGTAATTTAACAATTCGAGAGTATTTCGCTAATTTTACAAACTGG
1 AGGGTATTTCGATAATTTTACAAATCGAGGGTATTTCGGTAATTTTACAAA-TCG
* * * *
99950238 A-GGTATTTC-AGTAATTCTACAAAACTGAAGGTATTTCGGTAATTTTACAAATTG
1 AGGGTATTTCGA-TAATTTTACAAATC-GAGGGTATTTCGGTAATTTTACAAATCG
** * * * *
99950292 AGGGTATTTTAATAATTTTACAATTCAAGGGTATTTCGATAATTTTACAAATTTG
1 AGGGTATTTCGATAATTTTACAAATCGAGGGTATTTCGGTAATTTTACAAA-TCG
* * * *
99950347 -GGGTATTTCGACAATTCTACAAATCGGGGGTATTTCGGTAATTTTACAATTCG
1 AGGGTATTTCGATAATTTTACAAATCGAGGGTATTTCGGTAATTTTACAAATCG
99950400 AGGGTATTTCGATAATTTTACAAA
1 AGGGTATTTCGATAATTTTACAAA
99950424 CTAGGGTTAT
Statistics
Matches: 195, Mismatches: 39, Indels: 14
0.79 0.16 0.06
Matches are distributed among these distances:
53 2 0.01
54 146 0.75
55 46 0.24
56 1 0.01
ACGTcount: A:0.32, C:0.11, G:0.18, T:0.39
Consensus pattern (54 bp):
AGGGTATTTCGATAATTTTACAAATCGAGGGTATTTCGGTAATTTTACAAATCG
Found at i:99950191 original size:81 final size:81
Alignment explanation
Indices: 99950104--99950448 Score: 315
Period size: 81 Copynumber: 4.2 Consensus size: 81
99950094 ACCCTTTAGA
* * * * *
99950104 GGTATTTTGGTCATTTTAC-ACTACAAGGGTATTTCGATAATTTTACAAATCGGGGGTATTT-TA
1 GGTATTTTGGTAATTTTACAAAT-CGAGGGTATTTCGATAATTTTACAAATCGAGGGTATTTCGA
99950167 TTAATTTTACAAATCGAG
65 -TAATTTTACAAATCGAG
* * * * *
99950185 GGTATTTTGGTAATTTAACAATTCGAGAGTATTTCGCTAATTTTACAAACTGGA-GGTATTTC-A
1 GGTATTTTGGTAATTTTACAAATCGAGGGTATTTCGATAATTTTACAAA-TCGAGGGTATTTCGA
* * *
99950248 GTAATTCTACAAAACTGAA
65 -TAATTTTACAAATC-GAG
* * ** * *
99950267 GGTATTTCGGTAATTTTACAAATTGAGGGTATTTTAATAATTTTACAATTCAAGGGTATTTCGAT
1 GGTATTTTGGTAATTTTACAAATCGAGGGTATTTCGATAATTTTACAAATCGAGGGTATTTCGAT
*
99950332 AATTTTACAAATTTG-G
66 AATTTTACAAA-TCGAG
* ** * * * *
99950348 GGTATTTCGACAATTCTACAAATCGGGGGTATTTCGGTAATTTTACAATTCGAGGGTATTTCGAT
1 GGTATTTTGGTAATTTTACAAATCGAGGGTATTTCGATAATTTTACAAATCGAGGGTATTTCGAT
*
99950413 AATTTTACAAA-CTAG
66 AATTTTACAAATCGAG
* *
99950428 GGTTATTTTGATAATTCTACA
1 GG-TATTTTGGTAATTTTACA
99950449 TACCGGGGTC
Statistics
Matches: 215, Mismatches: 40, Indels: 18
0.79 0.15 0.07
Matches are distributed among these distances:
80 3 0.01
81 145 0.67
82 66 0.31
83 1 0.00
ACGTcount: A:0.31, C:0.11, G:0.18, T:0.40
Consensus pattern (81 bp):
GGTATTTTGGTAATTTTACAAATCGAGGGTATTTCGATAATTTTACAAATCGAGGGTATTTCGAT
AATTTTACAAATCGAG
Found at i:99955246 original size:13 final size:13
Alignment explanation
Indices: 99955228--99955254 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
99955218 GGAATAATCA
99955228 CACATGGGCGTGT
1 CACATGGGCGTGT
99955241 CACATGGGCGTGT
1 CACATGGGCGTGT
99955254 C
1 C
99955255 CTTGCCGAGC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.15, C:0.26, G:0.37, T:0.22
Consensus pattern (13 bp):
CACATGGGCGTGT
Found at i:99993366 original size:24 final size:24
Alignment explanation
Indices: 99993333--99993430 Score: 160
Period size: 24 Copynumber: 4.0 Consensus size: 24
99993323 AAGGCAGTCA
99993333 GGAGAAGATTTAGGAGCTGATAAG
1 GGAGAAGATTTAGGAGCTGATAAG
*
99993357 GGAGAGGATTTAGGAGCTGATAAG
1 GGAGAAGATTTAGGAGCTGATAAG
* *
99993381 GGAGAGGATTTAGGAGCTGATAAA
1 GGAGAAGATTTAGGAGCTGATAAG
99993405 GGAGAAGATTTAGGAGCTGATCAAG
1 GGAGAAGATTTAGGAGCTGAT-AAG
99993430 G
1 G
99993431 AACAGGAGTT
Statistics
Matches: 69, Mismatches: 4, Indels: 1
0.93 0.05 0.01
Matches are distributed among these distances:
24 66 0.96
25 3 0.04
ACGTcount: A:0.36, C:0.05, G:0.39, T:0.20
Consensus pattern (24 bp):
GGAGAAGATTTAGGAGCTGATAAG
Found at i:99996700 original size:35 final size:35
Alignment explanation
Indices: 99996657--99996726 Score: 104
Period size: 35 Copynumber: 2.0 Consensus size: 35
99996647 CTAGGATCAT
*
99996657 ATATCTTTGAAGATCACCTTCCATATTTTCCAAGC
1 ATATCTTTGAAGATCACCTTCCATATTTACCAAGC
* * *
99996692 ATATCTTTGAAGATTACTTTCCTTATTTACCAAGC
1 ATATCTTTGAAGATCACCTTCCATATTTACCAAGC
99996727 TCCAAATATG
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
35 31 1.00
ACGTcount: A:0.29, C:0.23, G:0.09, T:0.40
Consensus pattern (35 bp):
ATATCTTTGAAGATCACCTTCCATATTTACCAAGC
Found at i:99998170 original size:40 final size:40
Alignment explanation
Indices: 99998126--99998219 Score: 143
Period size: 40 Copynumber: 2.4 Consensus size: 40
99998116 ACTATGTTTG
* * *
99998126 GCACTTAGTATGCGTTTCAAAGTAGCTTCTGCTATAAATA
1 GCACTTAGTATGCATTTCAAAATAGCTTCGGCTATAAATA
*
99998166 GCACTTAGTGTGCATTTCAAAATAGCTTCGGCTATAAATA
1 GCACTTAGTATGCATTTCAAAATAGCTTCGGCTATAAATA
*
99998206 GCACTTAGTGTGCA
1 GCACTTAGTATGCA
99998220 AATTGGAATA
Statistics
Matches: 50, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
40 50 1.00
ACGTcount: A:0.30, C:0.18, G:0.19, T:0.33
Consensus pattern (40 bp):
GCACTTAGTATGCATTTCAAAATAGCTTCGGCTATAAATA
Found at i:99998230 original size:40 final size:40
Alignment explanation
Indices: 99998126--99998241 Score: 135
Period size: 40 Copynumber: 2.9 Consensus size: 40
99998116 ACTATGTTTG
* ** * *
99998126 GCACTTAGTATGCGTTTCAAAGTAGCTTCTGCTATAAATA
1 GCACTTAGTGTGCAATTCAAAATAGCTTCAGCTATAAATA
* *
99998166 GCACTTAGTGTGCATTTCAAAATAGCTTCGGCTATAAATA
1 GCACTTAGTGTGCAATTCAAAATAGCTTCAGCTATAAATA
**
99998206 GCACTTAGTGTGCAAATT-GGAATAGCTTCAGCTATA
1 GCACTTAGTGTGC-AATTCAAAATAGCTTCAGCTATA
99998242 TGAGGCACTA
Statistics
Matches: 67, Mismatches: 8, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
40 64 0.96
41 3 0.04
ACGTcount: A:0.31, C:0.17, G:0.19, T:0.33
Consensus pattern (40 bp):
GCACTTAGTGTGCAATTCAAAATAGCTTCAGCTATAAATA
Found at i:99998356 original size:44 final size:43
Alignment explanation
Indices: 99998242--99998348 Score: 159
Period size: 39 Copynumber: 2.6 Consensus size: 43
99998232 TTCAGCTATA
99998242 TGAGGCACTAAGTGTGCGATATCGAGATAGCTAAGATTTAATG
1 TGAGGCACTAAGTGTGCGATATCGAGATAGCTAAGATTTAATG
*
99998285 TGA--CA--AAGTGTACGATATCGAGATAGCTAAGATTTAATG
1 TGAGGCACTAAGTGTGCGATATCGAGATAGCTAAGATTTAATG
*
99998324 TGATGGCACTAAGTGTGCGAGATCG
1 TGA-GGCACTAAGTGTGCGATATCG
99998349 TTATAGCTTC
Statistics
Matches: 56, Mismatches: 3, Indels: 9
0.82 0.04 0.13
Matches are distributed among these distances:
39 36 0.64
41 2 0.04
42 2 0.04
43 3 0.05
44 13 0.23
ACGTcount: A:0.33, C:0.12, G:0.28, T:0.27
Consensus pattern (43 bp):
TGAGGCACTAAGTGTGCGATATCGAGATAGCTAAGATTTAATG
Found at i:100000196 original size:20 final size:22
Alignment explanation
Indices: 100000162--100000202 Score: 59
Period size: 20 Copynumber: 2.0 Consensus size: 22
100000152 AACTATATGA
100000162 ATTTTAGCAAAAATTA-AACAC
1 ATTTTAGCAAAAATTATAACAC
*
100000183 ATTTT-GCAACAATTATAACA
1 ATTTTAGCAAAAATTATAACA
100000203 TAAATAAACT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 9 0.50
21 9 0.50
ACGTcount: A:0.49, C:0.15, G:0.05, T:0.32
Consensus pattern (22 bp):
ATTTTAGCAAAAATTATAACAC
Found at i:100010466 original size:27 final size:26
Alignment explanation
Indices: 100010435--100010612 Score: 178
Period size: 27 Copynumber: 6.6 Consensus size: 26
100010425 TAAATTGTAC
100010435 AGCACTAAGTGTGCGATTCGACTATGT
1 AGCACTAAGTGTGCGATT-GACTATGT
* * *
100010462 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCG-ATTGACTATGT
* *
100010488 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCG-ATTGACTATGT
*
100010516 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA--TTGACTATGT
* *
100010544 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGA-TTGACTATGT
* *
100010571 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGA-TTGACTATGT
*
100010598 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
100010613 GGCTCAATAT
Statistics
Matches: 129, Mismatches: 17, Indels: 10
0.83 0.11 0.06
Matches are distributed among these distances:
26 1 0.01
27 103 0.80
28 25 0.19
ACGTcount: A:0.27, C:0.16, G:0.28, T:0.29
Consensus pattern (26 bp):
AGCACTAAGTGTGCGATTGACTATGT
Found at i:100010551 original size:82 final size:81
Alignment explanation
Indices: 100010436--100010591 Score: 224
Period size: 82 Copynumber: 1.9 Consensus size: 81
100010426 AAATTGTACA
* *
100010436 GCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
100010500 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
* ** *
100010517 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
100010582 TGCGAGTTGA
65 TGCGAATTGA
100010592 TTATATAGCA
Statistics
Matches: 66, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
81 15 0.23
82 50 0.76
83 1 0.02
ACGTcount: A:0.27, C:0.16, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:100010603 original size:82 final size:81
Alignment explanation
Indices: 100010432--100010612 Score: 220
Period size: 82 Copynumber: 2.2 Consensus size: 81
100010422 GATTAAATTG
* *
100010432 TACAGCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
100010497 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * * ** *
100010513 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
100010577 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
100010595 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
100010613 GGCTCAATAT
Statistics
Matches: 83, Mismatches: 15, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
81 18 0.22
82 65 0.78
ACGTcount: A:0.27, C:0.16, G:0.28, T:0.29
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:100010623 original size:27 final size:27
Alignment explanation
Indices: 100010517--100010623 Score: 70
Period size: 27 Copynumber: 3.9 Consensus size: 27
100010507 TGACCATGCG
* * * *
100010517 GCACTAAGTGTGCGAGTTTGACTATGTA
1 GCACTAAGTGTGCGAG-CTCAATATATA
** * * **
100010545 GCACTAAGTGTGCGATTTGATTACGTA
1 GCACTAAGTGTGCGAGCTCAATATATA
* * *
100010572 GCACTAAGTGTGCGAGTTGATTATATA
1 GCACTAAGTGTGCGAGCTCAATATATA
* *
100010599 GCACTGAGTGTGCGGGCTCAATATA
1 GCACTAAGTGTGCGAGCTCAATATA
100010624 CATTCGTGAA
Statistics
Matches: 68, Mismatches: 11, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
27 53 0.78
28 15 0.22
ACGTcount: A:0.26, C:0.15, G:0.28, T:0.31
Consensus pattern (27 bp):
GCACTAAGTGTGCGAGCTCAATATATA
Found at i:100018531 original size:27 final size:27
Alignment explanation
Indices: 100018500--100018677 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
100018490 TAAATTGTAC
100018500 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
100018527 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
100018553 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
100018581 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
100018609 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
100018636 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
100018663 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
100018678 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:100018614 original size:82 final size:81
Alignment explanation
Indices: 100018501--100018656 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
100018491 AAATTGTACA
* *
100018501 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
100018565 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
100018582 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
100018647 TGCGAGTTGA
65 TGCGAATTGA
100018657 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:100018668 original size:82 final size:81
Alignment explanation
Indices: 100018497--100018677 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
100018487 GATTAAATTG
* *
100018497 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
100018562 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
100018578 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
100018642 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
100018660 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
100018678 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:100023576 original size:27 final size:27
Alignment explanation
Indices: 100023546--100023712 Score: 203
Period size: 27 Copynumber: 6.2 Consensus size: 27
100023536 AAAGTACTCC
100023546 CGATTTACAGAATTACTGTTTTACCCT
1 CGATTTACAGAATTACTGTTTTACCCT
100023573 CGATTTACAGAATTACTGTTTTACCCT
1 CGATTTACAGAATTACTGTTTTACCCT
* ** * *
100023600 TGATTTGTAAAATTACCGTTTTACCCT
1 CGATTTACAGAATTACTGTTTTACCCT
* *
100023627 TGATTTACAGAATTACTGGTTTACCCT
1 CGATTTACAGAATTACTGTTTTACCCT
* *
100023654 C-AGTTTACAAAATTA-TCATTTTACCCT
1 CGA-TTTACAGAATTACT-GTTTTACCCT
* *
100023681 CGATTTATAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACTGTTTTACCCT
100023708 CGATT
1 CGATT
100023713 GTGAAATTAC
Statistics
Matches: 118, Mismatches: 18, Indels: 8
0.82 0.12 0.06
Matches are distributed among these distances:
26 2 0.02
27 115 0.97
28 1 0.01
ACGTcount: A:0.27, C:0.21, G:0.11, T:0.41
Consensus pattern (27 bp):
CGATTTACAGAATTACTGTTTTACCCT
Found at i:100023637 original size:81 final size:81
Alignment explanation
Indices: 100023546--100023712 Score: 239
Period size: 81 Copynumber: 2.1 Consensus size: 81
100023536 AAAGTACTCC
* * * * *
100023546 CGATTTACAGAATTACTGTTTTACCCTC-GATTTACAGAATTA-CTGTTTTACCCTTGATTTGTA
1 CGATTTACAGAATTACTGGTTTACCCTCAG-TTTACAAAATTATC-ATTTTACCCTCGATTTATA
100023609 AAATTACCGTTTTACCCT
64 AAATTACCGTTTTACCCT
* *
100023627 TGATTTACAGAATTACTGGTTTACCCTCAGTTTACAAAATTATCATTTTACCCTCGATTTATAGA
1 CGATTTACAGAATTACTGGTTTACCCTCAGTTTACAAAATTATCATTTTACCCTCGATTTATAAA
100023692 ATTACCGTTTTACCCT
66 ATTACCGTTTTACCCT
100023708 CGATT
1 CGATT
100023713 GTGAAATTAC
Statistics
Matches: 76, Mismatches: 8, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
81 74 0.97
82 2 0.03
ACGTcount: A:0.27, C:0.21, G:0.11, T:0.41
Consensus pattern (81 bp):
CGATTTACAGAATTACTGGTTTACCCTCAGTTTACAAAATTATCATTTTACCCTCGATTTATAAA
ATTACCGTTTTACCCT
Found at i:100023747 original size:27 final size:27
Alignment explanation
Indices: 100023717--100023885 Score: 178
Period size: 27 Copynumber: 6.3 Consensus size: 27
100023707 TCGATTGTGA
* * *
100023717 AATTACTGAAATACCCCTATAGGGAAG
1 AATTACCGAAATACCCCTGTAGGGTAG
** * * *
100023744 AATTACTAAAATACCCTTATAGGATAG
1 AATTACCGAAATACCCCTGTAGGGTAG
100023771 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
100023798 AATTATCGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * *
100023825 AAATACCAAAATACCCATGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * *
100023852 AATTACCGAGATACCCTTGT-GGGTTAA
1 AATTACCGAAATACCCCTGTAGGG-TAG
100023879 AATTACC
1 AATTACC
100023886 ATTTTGCCCC
Statistics
Matches: 121, Mismatches: 20, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
26 3 0.02
27 118 0.98
ACGTcount: A:0.38, C:0.18, G:0.18, T:0.25
Consensus pattern (27 bp):
AATTACCGAAATACCCCTGTAGGGTAG
Found at i:100023866 original size:54 final size:54
Alignment explanation
Indices: 100023725--100023875 Score: 196
Period size: 54 Copynumber: 2.8 Consensus size: 54
100023715 GAAATTACTG
* * ** * * * *
100023725 AAATACCCCTATAGGGAAGAATTACTAAAATACCCTTATAGGATAGAATTACCG
1 AAATACCCCTGTAGGGTAGAATTACCGAAATACCCTTGTAGGGTAGAAATACCA
*
100023779 AAATACCCCTGTAGGGTAGAATTATCGAAATACCCTTGTAGGGTAGAAATACCA
1 AAATACCCCTGTAGGGTAGAATTACCGAAATACCCTTGTAGGGTAGAAATACCA
* *
100023833 AAATACCCATGTAGGGTAGAATTACCGAGATACCCTTGT-GGGT
1 AAATACCCCTGTAGGGTAGAATTACCGAAATACCCTTGTAGGGT
100023876 TAAAATTACC
Statistics
Matches: 85, Mismatches: 12, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
53 4 0.05
54 81 0.95
ACGTcount: A:0.37, C:0.19, G:0.20, T:0.25
Consensus pattern (54 bp):
AAATACCCCTGTAGGGTAGAATTACCGAAATACCCTTGTAGGGTAGAAATACCA
Found at i:100023883 original size:81 final size:81
Alignment explanation
Indices: 100023716--100023884 Score: 207
Period size: 81 Copynumber: 2.1 Consensus size: 81
100023706 CTCGATTGTG
* * *
100023716 AAATTACTGAAATACCCCTATAGGGAAGAATTACTAAAATACCCTTATAGGATAGAATTACCGAA
1 AAATTACTGAAATACCCCTATAGGGAAGAAATACCAAAATACCCATATAGGATAGAATTACCGAA
100023781 ATACCCCTGTAGGGTA
66 ATACCCCTGTAGGGTA
* * * * * *
100023797 GAATTA-TCGAAATACCCTTGTAGGGTAGAAATACCAAAATACCCATGTAGGGTAGAATTACCGA
1 AAATTACT-GAAATACCCCTATAGGGAAGAAATACCAAAATACCCATATAGGATAGAATTACCGA
* *
100023861 GATACCCTTGT-GGGTTA
65 AATACCCCTGTAGGG-TA
100023878 AAATTAC
1 AAATTAC
100023885 CATTTTGCCC
Statistics
Matches: 73, Mismatches: 12, Indels: 5
0.81 0.13 0.06
Matches are distributed among these distances:
80 4 0.05
81 69 0.95
ACGTcount: A:0.38, C:0.18, G:0.18, T:0.25
Consensus pattern (81 bp):
AAATTACTGAAATACCCCTATAGGGAAGAAATACCAAAATACCCATATAGGATAGAATTACCGAA
ATACCCCTGTAGGGTA
Found at i:100024122 original size:27 final size:26
Alignment explanation
Indices: 100024084--100024166 Score: 112
Period size: 27 Copynumber: 3.1 Consensus size: 26
100024074 CGGAGGAAGC
*
100024084 GTTCTGGTGGCTATGCCACAAATATCT
1 GTTCTGGTGGCTCTGCCAC-AATATCT
100024111 GTTCTGGTGGCTCTGCCACAATATCT
1 GTTCTGGTGGCTCTGCCACAATATCT
* * *
100024137 GTATTTGGTGACTCTGTCACAATATCT
1 GT-TCTGGTGGCTCTGCCACAATATCT
100024164 GTT
1 GTT
100024167 GATCGATCGA
Statistics
Matches: 51, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
26 10 0.20
27 41 0.80
ACGTcount: A:0.19, C:0.22, G:0.22, T:0.37
Consensus pattern (26 bp):
GTTCTGGTGGCTCTGCCACAATATCT
Found at i:100024286 original size:22 final size:22
Alignment explanation
Indices: 100024254--100024312 Score: 64
Period size: 22 Copynumber: 2.7 Consensus size: 22
100024244 CCCGTTATTA
*
100024254 ATGGCTCTGTGCCAACCTAAAT
1 ATGGCTTTGTGCCAACCTAAAT
* * * *
100024276 ATGGCTTTGTGCCATCTTGACT
1 ATGGCTTTGTGCCAACCTAAAT
*
100024298 ATGGCTTCGTGCCAA
1 ATGGCTTTGTGCCAA
100024313 ACGTATTTAC
Statistics
Matches: 30, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.20, C:0.25, G:0.22, T:0.32
Consensus pattern (22 bp):
ATGGCTTTGTGCCAACCTAAAT
Found at i:100024499 original size:27 final size:27
Alignment explanation
Indices: 100024477--100024543 Score: 82
Period size: 27 Copynumber: 2.5 Consensus size: 27
100024467 TAGGTGGGTT
*
100024477 TGCCACATTATCTG-ATTCTGGTGGCTC
1 TGCCACAATATCTGTA-TCTGGTGGCTC
*
100024504 TGCCACAATATCTGTATCTGGTGACTC
1 TGCCACAATATCTGTATCTGGTGGCTC
* *
100024531 TGTCACGATATCT
1 TGCCACAATATCT
100024544 ATTCTGGCAG
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
27 34 0.97
28 1 0.03
ACGTcount: A:0.19, C:0.25, G:0.19, T:0.36
Consensus pattern (27 bp):
TGCCACAATATCTGTATCTGGTGGCTC
Found at i:100024677 original size:6 final size:6
Alignment explanation
Indices: 100024668--100024773 Score: 83
Period size: 6 Copynumber: 17.5 Consensus size: 6
100024658 TTGCATTCAC
* * * * *
100024668 ATTCTG ATTCTG ATTCTG -TCACCTA ATTTTG ATTCTG GTTTTG ATTCTG
1 ATTCTG ATTCTG ATTCTG AT--TCTG ATTCTG ATTCTG ATTCTG ATTCTG
* * *
100024717 -TTACTA ATACTG ATTCTG ATTCTG ATTCTG -TTACTA ATTCTG ATTCTG
1 ATT-CTG ATTCTG ATTCTG ATTCTG ATTCTG ATT-CTG ATTCTG ATTCTG
100024765 ATTCTG ATT
1 ATTCTG ATT
100024774 TTGGTTCCAA
Statistics
Matches: 77, Mismatches: 16, Indels: 14
0.72 0.15 0.13
Matches are distributed among these distances:
5 5 0.06
6 66 0.86
7 5 0.06
8 1 0.01
ACGTcount: A:0.20, C:0.16, G:0.14, T:0.50
Consensus pattern (6 bp):
ATTCTG
Found at i:100024731 original size:30 final size:30
Alignment explanation
Indices: 100024668--100024790 Score: 158
Period size: 30 Copynumber: 4.1 Consensus size: 30
100024658 TTGCATTCAC
* *
100024668 ATTCTGATTCTGATTCTGTCACCTAATTTTG
1 ATTCTGATTCTGATTCTGTTA-CTAATTCTG
* * *
100024699 ATTCTGGTTTTGATTCTGTTACTAATACTG
1 ATTCTGATTCTGATTCTGTTACTAATTCTG
100024729 ATTCTGATTCTGATTCTGTTACTAATTCTG
1 ATTCTGATTCTGATTCTGTTACTAATTCTG
* *
100024759 ATTCTGATTCTGATTTTGGTT-CCAATTCTG
1 ATTCTGATTCTGATTCT-GTTACTAATTCTG
100024789 AT
1 AT
100024791 AATGTTTCTT
Statistics
Matches: 81, Mismatches: 10, Indels: 3
0.86 0.11 0.03
Matches are distributed among these distances:
30 60 0.74
31 21 0.26
ACGTcount: A:0.20, C:0.16, G:0.15, T:0.50
Consensus pattern (30 bp):
ATTCTGATTCTGATTCTGTTACTAATTCTG
Found at i:100041982 original size:17 final size:17
Alignment explanation
Indices: 100041960--100042007 Score: 51
Period size: 17 Copynumber: 2.8 Consensus size: 17
100041950 AATAAAAGGG
100041960 ATTGTTTTAATTAACTA
1 ATTGTTTTAATTAACTA
* * *
100041977 ATTGTTTAAACTAATTA
1 ATTGTTTTAATTAACTA
* *
100041994 ACTGATTTAATTAA
1 ATTGTTTTAATTAA
100042008 AGCAAAGAGA
Statistics
Matches: 24, Mismatches: 7, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
17 24 1.00
ACGTcount: A:0.40, C:0.06, G:0.06, T:0.48
Consensus pattern (17 bp):
ATTGTTTTAATTAACTA
Found at i:100044321 original size:58 final size:57
Alignment explanation
Indices: 100044231--100044346 Score: 214
Period size: 58 Copynumber: 2.0 Consensus size: 57
100044221 ATTTGGGTTT
100044231 TTGATGTCATTCCTGTATACTTAAGATTTCAAGATAACACCTCAATTTAGAAATATAA
1 TTGATGTCATTCCTGTATACTTAAGATTTCAAGATAACACCTCAATTTAGAAA-ATAA
*
100044289 TTGATGTCATTCCTGTATACTTAAGATTTCAAGATAATACCTCAATTTAGAAAATAA
1 TTGATGTCATTCCTGTATACTTAAGATTTCAAGATAACACCTCAATTTAGAAAATAA
100044346 T
1 T
100044347 CTAAAAAATT
Statistics
Matches: 57, Mismatches: 1, Indels: 1
0.97 0.02 0.02
Matches are distributed among these distances:
57 5 0.09
58 52 0.91
ACGTcount: A:0.38, C:0.15, G:0.10, T:0.37
Consensus pattern (57 bp):
TTGATGTCATTCCTGTATACTTAAGATTTCAAGATAACACCTCAATTTAGAAAATAA
Found at i:100044991 original size:6 final size:6
Alignment explanation
Indices: 100044982--100045032 Score: 86
Period size: 6 Copynumber: 8.7 Consensus size: 6
100044972 GAAATGAAAT
*
100044982 TAAAAA TAAAAA TAAAAA T-AAAA TAAAAA TAAAAA TAAAAA TAAGAA
1 TAAAAA TAAAAA TAAAAA TAAAAA TAAAAA TAAAAA TAAAAA TAAAAA
100045029 TAAA
1 TAAA
100045033 TAACAAAAAA
Statistics
Matches: 42, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
5 5 0.12
6 37 0.88
ACGTcount: A:0.80, C:0.00, G:0.02, T:0.18
Consensus pattern (6 bp):
TAAAAA
Found at i:100045004 original size:17 final size:18
Alignment explanation
Indices: 100044982--100045032 Score: 86
Period size: 17 Copynumber: 2.9 Consensus size: 18
100044972 GAAATGAAAT
100044982 TAAAAATAAAAATAAAAA
1 TAAAAATAAAAATAAAAA
100045000 T-AAAATAAAAATAAAAA
1 TAAAAATAAAAATAAAAA
*
100045017 TAAAAATAAGAATAAA
1 TAAAAATAAAAATAAA
100045033 TAACAAAAAA
Statistics
Matches: 31, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
17 17 0.55
18 14 0.45
ACGTcount: A:0.80, C:0.00, G:0.02, T:0.18
Consensus pattern (18 bp):
TAAAAATAAAAATAAAAA
Found at i:100045005 original size:29 final size:29
Alignment explanation
Indices: 100044953--100045045 Score: 100
Period size: 29 Copynumber: 3.2 Consensus size: 29
100044943 TATGTCTTTC
* * * *
100044953 AAAATAAAATAATAAAATTGAAATGAAATTA
1 AAAAT-AAA-AATAAAAATAAAATAAAAATA
100044984 AAAATAAAAATAAAAATAAAATAAAAATA
1 AAAATAAAAATAAAAATAAAATAAAAATA
* *
100045013 AAAATAAAAATAAGAAT-AAATAACAA-A
1 AAAATAAAAATAAAAATAAAATAAAAATA
100045040 AAAATA
1 AAAATA
100045046 GGAGGAGTCA
Statistics
Matches: 56, Mismatches: 6, Indels: 4
0.85 0.09 0.06
Matches are distributed among these distances:
27 7 0.12
28 8 0.14
29 33 0.59
30 3 0.05
31 5 0.09
ACGTcount: A:0.76, C:0.01, G:0.03, T:0.19
Consensus pattern (29 bp):
AAAATAAAAATAAAAATAAAATAAAAATA
Found at i:100046983 original size:21 final size:20
Alignment explanation
Indices: 100046959--100047003 Score: 63
Period size: 21 Copynumber: 2.2 Consensus size: 20
100046949 TCGCTTCTCC
*
100046959 CACGCCCGTGTGTTATGGTA
1 CACGCCCGTGTATTATGGTA
*
100046979 GCACGCCCGTGTATTATTGTA
1 -CACGCCCGTGTATTATGGTA
100047000 CACG
1 CACG
100047004 GCTGAATGGC
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
20 4 0.18
21 18 0.82
ACGTcount: A:0.18, C:0.27, G:0.27, T:0.29
Consensus pattern (20 bp):
CACGCCCGTGTATTATGGTA
Found at i:100053595 original size:47 final size:47
Alignment explanation
Indices: 100053488--100053871 Score: 651
Period size: 47 Copynumber: 8.1 Consensus size: 47
100053478 GAAATGATAG
100053488 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGA
*
100053537 TAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
100053584 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
100053631 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
100053678 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAA--GTGTATATATGTGA
*
100053727 TAGGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
100053774 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* * * * * * *
100053821 CAGGGCCTAGTGGCCAACGTGATGGATGTGAAAGTGTATAAATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
100053868 TAAG
1 TAAG
100053872 TCCCGAAGGG
Statistics
Matches: 320, Mismatches: 13, Indels: 6
0.94 0.04 0.02
Matches are distributed among these distances:
47 239 0.75
49 81 0.25
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (47 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
Found at i:100053746 original size:143 final size:141
Alignment explanation
Indices: 100053488--100053871 Score: 651
Period size: 143 Copynumber: 2.7 Consensus size: 141
100053478 GAAATGATAG
*
100053488 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCTTAATGGCCG
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCG
100053553 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
64 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
100053618 TGTATATATGTGA
129 TGTATATATGTGA
100053631 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
*
100053696 GTGATGAATGTGAAAGTGTGTATATATGTGATAGGGCCTAATGGCCGATGTGATGAATGTGAAAG
66 GTGATGAATGTGAAA--GTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
100053761 TGTATATATGTGA
129 TGTATATATGTGA
* * * * *
100053774 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGACAGGGCCTAGTGGCCAAC
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
* *
100053839 GTGATGGATGTGAAAGTGTATAAATGTGATAAG
66 GTGATGAATGTGAAAGTGTATATATGTGATAAG
100053872 TCCCGAAGGG
Statistics
Matches: 229, Mismatches: 10, Indels: 6
0.93 0.04 0.02
Matches are distributed among these distances:
141 59 0.26
143 170 0.74
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (141 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
GTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
TATATATGTGA
Found at i:100053811 original size:190 final size:190
Alignment explanation
Indices: 100053488--100053871 Score: 678
Period size: 190 Copynumber: 2.0 Consensus size: 190
100053478 GAAATGATAG
*
100053488 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCTTAATGGCCG
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
100053553 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
66 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
* * * *
100053618 TGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
131 TGTATATATGTGACAAGGCCTAATGGCCAACGTGATGAATGTGAAAGTGTATAAATGTGA
* *
100053678 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTGTATATATGTGATAGGGCCTAATGGCCG
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
100053743 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
66 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
* * *
100053808 TGTATATATGTGACAGGGCCTAGTGGCCAACGTGATGGATGTGAAAGTGTATAAATGTGA
131 TGTATATATGTGACAAGGCCTAATGGCCAACGTGATGAATGTGAAAGTGTATAAATGTGA
100053868 TAAG
1 TAAG
100053872 TCCCGAAGGG
Statistics
Matches: 184, Mismatches: 10, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
190 184 1.00
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (190 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
TGTATATATGTGACAAGGCCTAATGGCCAACGTGATGAATGTGAAAGTGTATAAATGTGA
Found at i:100056561 original size:40 final size:40
Alignment explanation
Indices: 100056483--100056706 Score: 310
Period size: 40 Copynumber: 5.5 Consensus size: 40
100056473 ACCCAAGTAT
* *
100056483 CTTCGGGATTTAG-CCGGATATAG-CAACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATGC
* **
100056522 CTTCGGGTCTTAGCCCGGATATAGTCACTAGCATGAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
100056562 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
*
100056602 CTTCGGGACTTAGCCCGGGTATAG-CAACTACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTC-ACTA---GCACAAATGC
* *
100056645 CTTCGGGACTTAGCCCGGATATAGTAACTTGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
100056685 CTTCGGGACTTAGCCCGGATAT
1 CTTCGGGACTTAGCCCGGATAT
100056707 CATCCGAATA
Statistics
Matches: 166, Mismatches: 12, Indels: 13
0.87 0.06 0.07
Matches are distributed among these distances:
39 12 0.07
40 117 0.70
41 1 0.01
43 36 0.22
ACGTcount: A:0.25, C:0.27, G:0.24, T:0.24
Consensus pattern (40 bp):
CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
Found at i:100056679 original size:83 final size:80
Alignment explanation
Indices: 100056483--100056706 Score: 317
Period size: 83 Copynumber: 2.8 Consensus size: 80
100056473 ACCCAAGTAT
* * * *
100056483 CTTCGGGATTTAG-CCGGATATAGCAACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATATAGT
1 CTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAGT
**
100056547 CACTAGCATGAATGC
66 CACTAGCACAAATGC
* *
100056562 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGACTTAGCCCGGGTATAG-
1 CTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAGT
100056626 CAACTACTCGCACAAATGC
66 C-ACTA---GCACAAATGC
*
100056645 CTTCGGGACTTAGCCCGGATATAGTAACTTGCACAAATGCCTTCGGGACTTAGCCCGGATAT
1 CTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATAT
100056707 CATCCGAATA
Statistics
Matches: 129, Mismatches: 11, Indels: 6
0.88 0.08 0.04
Matches are distributed among these distances:
79 13 0.10
80 49 0.38
83 67 0.52
ACGTcount: A:0.25, C:0.27, G:0.24, T:0.24
Consensus pattern (80 bp):
CTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAGT
CACTAGCACAAATGC
Found at i:100060471 original size:15 final size:15
Alignment explanation
Indices: 100060451--100060481 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
100060441 AAATATGAAA
100060451 GATATGTTTTGGATT
1 GATATGTTTTGGATT
*
100060466 GATATGTTTTGTATT
1 GATATGTTTTGGATT
100060481 G
1 G
100060482 GAATTTTTAG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.19, C:0.00, G:0.26, T:0.55
Consensus pattern (15 bp):
GATATGTTTTGGATT
Found at i:100061155 original size:56 final size:56
Alignment explanation
Indices: 100061094--100061227 Score: 268
Period size: 56 Copynumber: 2.4 Consensus size: 56
100061084 CATGGCATAT
100061094 ATATATGTGTGCGAGTAAGACCACGTTTTATACGTTGGCATCAATATGTGACTTCA
1 ATATATGTGTGCGAGTAAGACCACGTTTTATACGTTGGCATCAATATGTGACTTCA
100061150 ATATATGTGTGCGAGTAAGACCACGTTTTATACGTTGGCATCAATATGTGACTTCA
1 ATATATGTGTGCGAGTAAGACCACGTTTTATACGTTGGCATCAATATGTGACTTCA
100061206 ATATATGTGTGCGAGTAAGACC
1 ATATATGTGTGCGAGTAAGACC
100061228 CTGCCTAGGA
Statistics
Matches: 78, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
56 78 1.00
ACGTcount: A:0.29, C:0.16, G:0.22, T:0.33
Consensus pattern (56 bp):
ATATATGTGTGCGAGTAAGACCACGTTTTATACGTTGGCATCAATATGTGACTTCA
Found at i:100061245 original size:56 final size:56
Alignment explanation
Indices: 100061094--100061255 Score: 193
Period size: 56 Copynumber: 2.9 Consensus size: 56
100061084 CATGGCATAT
** * **
100061094 ATATATGTGTGCGAGTAAGACCACGTTTTATACGTTGGCATCAATATGTGACTTCA
1 ATATATGTGTGCGAGTAAGACCACGTCCTAGACAATGGCATCAATATGTGACTTCA
** * **
100061150 ATATATGTGTGCGAGTAAGACCACGTTTTATACGTTGGCATCAATATGTGACTTCA
1 ATATATGTGTGCGAGTAAGACCACGTCCTAGACAATGGCATCAATATGTGACTTCA
*
100061206 ATATATGTGTGCGAGTAAGACC-C-TGCCTAGGACAATGGCATCGATATGTG
1 ATATATGTGTGCGAGTAAGACCACGT-CCTA-GACAATGGCATCAATATGTG
100061256 GTTACATGTA
Statistics
Matches: 98, Mismatches: 6, Indels: 4
0.91 0.06 0.04
Matches are distributed among these distances:
54 1 0.01
55 3 0.03
56 94 0.96
ACGTcount: A:0.28, C:0.17, G:0.23, T:0.31
Consensus pattern (56 bp):
ATATATGTGTGCGAGTAAGACCACGTCCTAGACAATGGCATCAATATGTGACTTCA
Found at i:100064034 original size:27 final size:26
Alignment explanation
Indices: 100064004--100064060 Score: 60
Period size: 26 Copynumber: 2.2 Consensus size: 26
100063994 ACTACAATAT
* *
100064004 CCTAAGTATAAAAATTACCATTATACC
1 CCTAAGT-GAAAAATGACCATTATACC
* * *
100064031 CCTAGGTGCAAAATGACTATTATACC
1 CCTAAGTGAAAAATGACCATTATACC
100064057 CCTA
1 CCTA
100064061 GGGTTGATTT
Statistics
Matches: 25, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
26 19 0.76
27 6 0.24
ACGTcount: A:0.39, C:0.25, G:0.09, T:0.28
Consensus pattern (26 bp):
CCTAAGTGAAAAATGACCATTATACC
Found at i:100070867 original size:15 final size:15
Alignment explanation
Indices: 100070835--100070863 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
100070825 ATTTTCTATG
100070835 TTTATTATGTGTGAA
1 TTTATTATGTGTGAA
100070850 TTTA-TATGTGTGAA
1 TTTATTATGTGTGAA
100070864 ATTTTAATGA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 10 0.71
15 4 0.29
ACGTcount: A:0.28, C:0.00, G:0.21, T:0.52
Consensus pattern (15 bp):
TTTATTATGTGTGAA
Found at i:100073676 original size:56 final size:55
Alignment explanation
Indices: 100073577--100073681 Score: 135
Period size: 56 Copynumber: 1.9 Consensus size: 55
100073567 GACCATGCCA
* *
100073577 TCGATATATGTGTGCAGTAAGACCACGTTTTATACGTTGGCATCGATATGTGACT
1 TCGATATATGTGTGCAGTAAGACCACGTTCTAGACGTTGGCATCGATATGTGACT
100073632 TCGATATATGTGTGCAAGTAAGACC-C-TGTCTAGGACAG-TGGCATCGATAT
1 TCGATATATGTGTGC-AGTAAGACCACGT-TCTA-GAC-GTTGGCATCGATAT
100073682 ATGATTACAT
Statistics
Matches: 44, Mismatches: 2, Indels: 7
0.83 0.04 0.13
Matches are distributed among these distances:
54 1 0.02
55 19 0.43
56 23 0.52
57 1 0.02
ACGTcount: A:0.27, C:0.17, G:0.25, T:0.31
Consensus pattern (55 bp):
TCGATATATGTGTGCAGTAAGACCACGTTCTAGACGTTGGCATCGATATGTGACT
Found at i:100083755 original size:39 final size:39
Alignment explanation
Indices: 100083712--100083798 Score: 138
Period size: 39 Copynumber: 2.2 Consensus size: 39
100083702 CCGGCAATTA
* *
100083712 GCCTGCTAGGTATAAACCTGACCTTATCACCGACACGAG
1 GCCTGCTAGCTATAAACCTGAACTTATCACCGACACGAG
* *
100083751 GCCTGCTAGCTATAAACCTGAATTTATCACCGGCACGAG
1 GCCTGCTAGCTATAAACCTGAACTTATCACCGACACGAG
100083790 GCCTGCTAG
1 GCCTGCTAG
100083799 ATATTAAGTC
Statistics
Matches: 44, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
39 44 1.00
ACGTcount: A:0.26, C:0.30, G:0.22, T:0.22
Consensus pattern (39 bp):
GCCTGCTAGCTATAAACCTGAACTTATCACCGACACGAG
Found at i:100088109 original size:21 final size:19
Alignment explanation
Indices: 100088080--100088118 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 19
100088070 TTCTAACCCA
100088080 TAATAATTTTCATACAATTTT
1 TAATAATTTTC-TA-AATTTT
*
100088101 TAATGATTTTCTAAATTT
1 TAATAATTTTCTAAATTT
100088119 AAGACAGGGG
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 5 0.29
20 2 0.12
21 10 0.59
ACGTcount: A:0.36, C:0.08, G:0.03, T:0.54
Consensus pattern (19 bp):
TAATAATTTTCTAAATTTT
Found at i:100092087 original size:48 final size:48
Alignment explanation
Indices: 100092035--100092243 Score: 161
Period size: 48 Copynumber: 4.4 Consensus size: 48
100092025 CTAGACATGA
* * *
100092035 TCTTATACGGGACCTCATATTAATGCCAATGCCATATCCCAAATATGG
1 TCTTATACGGGATCTCATATCAATGCCGATGCCATATCCCAAATATGG
* * * * * * * *
100092083 TCTTACATGGGATTTCATA-CTGATGCTGATGCCATGTCCCAAACAAGG
1 TCTTATACGGGATCTCATATC-AATGCCGATGCCATATCCCAAATATGG
* * * * *
100092131 TCATT-TACGGGATCTCTTATCAATGCTGATGCCATATTCCAGATATTG
1 TC-TTATACGGGATCTCATATCAATGCCGATGCCATATCCCAAATATGG
* * * * * ** *
100092179 CCTTACACGGAATCTCATCTCGATGCCGATTTCATATCCCAGATATGG
1 TCTTATACGGGATCTCATATCAATGCCGATGCCATATCCCAAATATGG
*
100092227 TCTTATATGGGATCTCA
1 TCTTATACGGGATCTCA
100092244 ATACTGACAT
Statistics
Matches: 120, Mismatches: 37, Indels: 8
0.73 0.22 0.05
Matches are distributed among these distances:
47 2 0.02
48 115 0.96
49 3 0.03
ACGTcount: A:0.27, C:0.24, G:0.17, T:0.32
Consensus pattern (48 bp):
TCTTATACGGGATCTCATATCAATGCCGATGCCATATCCCAAATATGG
Found at i:100093308 original size:180 final size:180
Alignment explanation
Indices: 100093006--100093366 Score: 722
Period size: 180 Copynumber: 2.0 Consensus size: 180
100092996 CTTACAATCG
100093006 AGCTTGGAAGCTTGAAAAACCATAGCCATGGTTTCTCCATGCAAGTTTCAGCCATATCTTGAAGA
1 AGCTTGGAAGCTTGAAAAACCATAGCCATGGTTTCTCCATGCAAGTTTCAGCCATATCTTGAAGA
100093071 TGGACAAAAATTGGCTTTTAATATTGTTTTTAACTCATTTTAATTACTAAATAACCAAAATGCCC
66 TGGACAAAAATTGGCTTTTAATATTGTTTTTAACTCATTTTAATTACTAAATAACCAAAATGCCC
100093136 CTAACTTAAAAATATTCTATTTCACCTATTTTTCATGTCCATTTTTGTTC
131 CTAACTTAAAAATATTCTATTTCACCTATTTTTCATGTCCATTTTTGTTC
100093186 AGCTTGGAAGCTTGAAAAACCATAGCCATGGTTTCTCCATGCAAGTTTCAGCCATATCTTGAAGA
1 AGCTTGGAAGCTTGAAAAACCATAGCCATGGTTTCTCCATGCAAGTTTCAGCCATATCTTGAAGA
100093251 TGGACAAAAATTGGCTTTTAATATTGTTTTTAACTCATTTTAATTACTAAATAACCAAAATGCCC
66 TGGACAAAAATTGGCTTTTAATATTGTTTTTAACTCATTTTAATTACTAAATAACCAAAATGCCC
100093316 CTAACTTAAAAATATTCTATTTCACCTATTTTTCATGTCCATTTTTGTTC
131 CTAACTTAAAAATATTCTATTTCACCTATTTTTCATGTCCATTTTTGTTC
100093366 A
1 A
100093367 AAAAATTAAC
Statistics
Matches: 181, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
180 181 1.00
ACGTcount: A:0.32, C:0.19, G:0.12, T:0.38
Consensus pattern (180 bp):
AGCTTGGAAGCTTGAAAAACCATAGCCATGGTTTCTCCATGCAAGTTTCAGCCATATCTTGAAGA
TGGACAAAAATTGGCTTTTAATATTGTTTTTAACTCATTTTAATTACTAAATAACCAAAATGCCC
CTAACTTAAAAATATTCTATTTCACCTATTTTTCATGTCCATTTTTGTTC
Found at i:100100475 original size:40 final size:40
Alignment explanation
Indices: 100100393--100100654 Score: 368
Period size: 40 Copynumber: 6.6 Consensus size: 40
100100383 TATTCGAAAA
* * * * *
100100393 ATATCCGGGCTAAGTCCCGAAGGCTTTTATACTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* * * *
100100433 ATATCCAGACTAAGAT-CCGAAGGCATTTGTTCGAGTTGCT
1 ATATCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACT
100100473 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
100100513 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTAACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
100100553 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* *
100100593 ATAACCGGGCTAAGTCCCGAAGGCATTTGAGCGAG-TAGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CT
*
100100633 ATATCC-GGCTAAATCCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGG
100100655 TACTTGGTTT
Statistics
Matches: 201, Mismatches: 18, Indels: 7
0.89 0.08 0.03
Matches are distributed among these distances:
39 18 0.09
40 182 0.91
41 1 0.00
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
Found at i:100106540 original size:40 final size:40
Alignment explanation
Indices: 100106495--100106574 Score: 133
Period size: 40 Copynumber: 2.0 Consensus size: 40
100106485 GGGGGAGAGT
* * *
100106495 TGTGACAGCCCTAAATTGACCCTAGTCGGAAAGTGGTTTC
1 TGTGACACCCCTAAAGTGACCCTAGTCGGAAAGCGGTTTC
100106535 TGTGACACCCCTAAAGTGACCCTAGTCGGAAAGCGGTTTC
1 TGTGACACCCCTAAAGTGACCCTAGTCGGAAAGCGGTTTC
100106575 GAGACTAAAC
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
40 37 1.00
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.25
Consensus pattern (40 bp):
TGTGACACCCCTAAAGTGACCCTAGTCGGAAAGCGGTTTC
Found at i:100110371 original size:40 final size:40
Alignment explanation
Indices: 100109555--100110359 Score: 1181
Period size: 40 Copynumber: 20.2 Consensus size: 40
100109545 GGCTAAATCT
100109555 CGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTTC
1 CGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTTC
100109595 CGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTTC
1 CGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTTC
*
100109635 CGAAGAGCATTCGTGCTAGTGATGTATCTGGACTAAGTTC
1 CGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTTC
*
100109675 CGAACAGCATTCGTGCTAGTGATGTATCCGGACTAAGTTC
1 CGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTTC
*
100109715 CGAAGAGCATTCGTGCTAGTGATGTATCTGGACTAAGTTC
1 CGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTTC
*
100109755 CGAACAGCATTCGTGCTAGTGATGTATCCGGACTAAGTTC
1 CGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTTC
*
100109795 CGAAGAGCATTCGTGCTAGTGATGTATCTGGACTAAGTTC
1 CGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTTC
*
100109835 CGAACAGCATTCGTGCTAGTGATGTATCCGGACTAAGTTC
1 CGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTTC
*
100109875 CGAAGAGCATTCGTGCTAGTGATGTATCTGGACTAAGTTC
1 CGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTTC
*
100109915 CGAACAGCATTCGTGCTAGTGATGTATCCGGACTAAGTTC
1 CGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTTC
*
100109955 CGAAGAGCATTCGTGCTAGTGATGTATCTGGACTAAGTTC
1 CGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTTC
*
100109995 CGAACAGCATTCGTGCTAGTGATGTATCCGGACTAAGTTC
1 CGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTTC
* ***
100110035 CGAAGAGCATTCGTGCTAGTGATATATCCGTG-CTAAACCC
1 CGAAGAGCATTCGTGCTAGTGATGTATCCG-GACTAAGTTC
* * * * * * *
100110075 CGAAGAGCATTTGTGCTGGTGTTATATCCGGGCTAGGTCC
1 CGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTTC
* * * *
100110115 CGAAGAGCAATCATGCTGGTGACGTATCCGGACTAAGTTC
1 CGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTTC
*
100110155 TGAAGAGCATTC--G--AGTGATGTATCCGGACTAAGTTC
1 CGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTTC
* *
100110191 CGAAGAGCATTCGTGCTAGTGATGTATCTGGACTAAGTTT
1 CGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTTC
*
100110231 CGAAGAGCATTCGTGCTAGTCATGTATCCGGACTAAGTTC
1 CGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTTC
* ***
100110271 CGAAGAGCATTCGTGCTAGTGATATATCCGTG-CTAAACCC
1 CGAAGAGCATTCGTGCTAGTGATGTATCCG-GACTAAGTTC
* * * * * * * *
100110311 CGAATAGCATTTGTGCTGGTGTTATATCCGGGCTAGGTCC
1 CGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTTC
100110351 CGAAGAGCA
1 CGAAGAGCA
100110360 ATCATGCTGG
Statistics
Matches: 695, Mismatches: 62, Indels: 16
0.90 0.08 0.02
Matches are distributed among these distances:
36 32 0.05
38 2 0.00
39 2 0.00
40 657 0.95
41 2 0.00
ACGTcount: A:0.25, C:0.20, G:0.27, T:0.28
Consensus pattern (40 bp):
CGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTTC
Found at i:100112185 original size:13 final size:13
Alignment explanation
Indices: 100112167--100112191 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
100112157 TAATGGTATA
100112167 TTGAATCCATGAT
1 TTGAATCCATGAT
100112180 TTGAATCCATGA
1 TTGAATCCATGA
100112192 AAATTTAGTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TTGAATCCATGAT
Found at i:100113743 original size:47 final size:47
Alignment explanation
Indices: 100113684--100113804 Score: 145
Period size: 47 Copynumber: 2.6 Consensus size: 47
100113674 TATTTGAATA
* * * *
100113684 AATGCGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAACGTGATG
* * *
100113731 AATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAACGTGATG
* *
100113778 GATGTGAAAGTGTGA-AAATGTGATAAG
1 AATGTGAAAGTGT-ATATATGTGATAAG
100113805 TCCCGAAGGG
Statistics
Matches: 62, Mismatches: 11, Indels: 2
0.83 0.15 0.03
Matches are distributed among these distances:
47 61 0.98
48 1 0.02
ACGTcount: A:0.33, C:0.09, G:0.32, T:0.26
Consensus pattern (47 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAACGTGATG
Found at i:100117403 original size:40 final size:40
Alignment explanation
Indices: 100117359--100117576 Score: 307
Period size: 40 Copynumber: 5.5 Consensus size: 40
100117349 CGGATGATAA
* * *
100117359 CCGGGCTAAGTCCCGAATGCATTTGTGCTAGTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-T
*
100117399 CCGGGCTAAGCCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
100117439 CTGGGCTAAGCCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
100117479 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
100117519 CCGGGCTAAGTCCCGAAGGCATTTGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
* *
100117559 -CTGGCTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
100117577 TACTTGGTTT
Statistics
Matches: 164, Mismatches: 12, Indels: 5
0.91 0.07 0.03
Matches are distributed among these distances:
39 18 0.11
40 145 0.88
41 1 0.01
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:100128174 original size:28 final size:28
Alignment explanation
Indices: 100128135--100128223 Score: 126
Period size: 28 Copynumber: 3.1 Consensus size: 28
100128125 AGCATGGCTG
*
100128135 CCAGATACAGATATTTTGTGGCAGTGCCA
1 CCAGA-ACAGATAATTTGTGGCAGTGCCA
*
100128164 CCAGAACAGATAATTTGTGGCAGGGCCA
1 CCAGAACAGATAATTTGTGGCAGTGCCA
*
100128192 CTAGAACAGATAATTTGTGGCA-TAGCCA
1 CCAGAACAGATAATTTGTGGCAGT-GCCA
100128220 CCAG
1 CCAG
100128224 GACGCTTCCT
Statistics
Matches: 54, Mismatches: 5, Indels: 3
0.87 0.08 0.05
Matches are distributed among these distances:
28 49 0.91
29 5 0.09
ACGTcount: A:0.31, C:0.21, G:0.25, T:0.22
Consensus pattern (28 bp):
CCAGAACAGATAATTTGTGGCAGTGCCA
Found at i:100128376 original size:28 final size:28
Alignment explanation
Indices: 100128329--100128396 Score: 118
Period size: 28 Copynumber: 2.4 Consensus size: 28
100128319 AAATTAACCC
* *
100128329 TAGGGGTATAAAGGTCATTTTGCATACA
1 TAGGGGTATAATGGTAATTTTGCATACA
100128357 TAGGGGTATAATGGTAATTTTGCATACA
1 TAGGGGTATAATGGTAATTTTGCATACA
100128385 TAGGGGTATAAT
1 TAGGGGTATAAT
100128397 AGTATATCTA
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
28 38 1.00
ACGTcount: A:0.32, C:0.07, G:0.26, T:0.34
Consensus pattern (28 bp):
TAGGGGTATAATGGTAATTTTGCATACA
Found at i:100138824 original size:21 final size:21
Alignment explanation
Indices: 100138800--100138842 Score: 86
Period size: 21 Copynumber: 2.0 Consensus size: 21
100138790 CAACTACATG
100138800 TTAGTCTTAATGCATTATTGT
1 TTAGTCTTAATGCATTATTGT
100138821 TTAGTCTTAATGCATTATTGT
1 TTAGTCTTAATGCATTATTGT
100138842 T
1 T
100138843 GTCCTAGTCA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.23, C:0.09, G:0.14, T:0.53
Consensus pattern (21 bp):
TTAGTCTTAATGCATTATTGT
Found at i:100142690 original size:20 final size:23
Alignment explanation
Indices: 100142667--100142721 Score: 71
Period size: 23 Copynumber: 2.5 Consensus size: 23
100142657 CAAGTTGGAG
*
100142667 TTAATTTGTCTTAG-T-T-GAAT
1 TTAATTTGTCCTAGCTGTCGAAT
*
100142687 TTAAGTTGTCCTAGCTGTCGAAT
1 TTAATTTGTCCTAGCTGTCGAAT
100142710 TTAATTTGTCCT
1 TTAATTTGTCCT
100142722 TAAGATTGAC
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
20 12 0.41
21 1 0.03
22 1 0.03
23 15 0.52
ACGTcount: A:0.22, C:0.13, G:0.16, T:0.49
Consensus pattern (23 bp):
TTAATTTGTCCTAGCTGTCGAAT
Found at i:100143643 original size:8 final size:8
Alignment explanation
Indices: 100143630--100143662 Score: 66
Period size: 8 Copynumber: 4.1 Consensus size: 8
100143620 AAATTATCCC
100143630 TCACATTT
1 TCACATTT
100143638 TCACATTT
1 TCACATTT
100143646 TCACATTT
1 TCACATTT
100143654 TCACATTT
1 TCACATTT
100143662 T
1 T
100143663 AGTCCCTAAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 25 1.00
ACGTcount: A:0.24, C:0.24, G:0.00, T:0.52
Consensus pattern (8 bp):
TCACATTT
Found at i:100146663 original size:27 final size:27
Alignment explanation
Indices: 100146616--100146856 Score: 250
Period size: 27 Copynumber: 8.9 Consensus size: 27
100146606 GGGCAAAATG
* * * * *
100146616 GTAATTTTACCCCACAAGGGTATCTCG
1 GTAATTCTACCCTACAGGGGTATTTCA
* * *
100146643 GTAATTCTAACCTATAGGGGTATTTTA
1 GTAATTCTACCCTACAGGGGTATTTCA
* ** *
100146670 GTATTTCTACCCTACAACGGTATTTCG
1 GTAATTCTACCCTACAGGGGTATTTCA
** **
100146697 GTAATTCTACCCTTTAGCAGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCA
*
100146724 GTAATTCTACCCTACAGGGGTGTTTC-
1 GTAATTCTACCCTACAGGGGTATTTCA
*
100146750 GATAATTCTACCCTATAGGGGTATTTCA
1 G-TAATTCTACCCTACAGGGGTATTTCA
*
100146778 GTAATTCTACCCTACAGGGCTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCA
* * *
100146805 ATAATTCTACCCTATAGGGATATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCA
* *
100146832 GTATTTCTACCCTACAAGGGTATTT
1 GTAATTCTACCCTACAGGGGTATTT
100146857 TGGTAATTTT
Statistics
Matches: 174, Mismatches: 38, Indels: 4
0.81 0.18 0.02
Matches are distributed among these distances:
26 1 0.01
27 172 0.99
28 1 0.01
ACGTcount: A:0.26, C:0.21, G:0.16, T:0.37
Consensus pattern (27 bp):
GTAATTCTACCCTACAGGGGTATTTCA
Found at i:100146681 original size:54 final size:54
Alignment explanation
Indices: 100146619--100146864 Score: 316
Period size: 54 Copynumber: 4.6 Consensus size: 54
100146609 CAAAATGGTA
* * * *
100146619 ATTT-TACCCCACAAGGGTATCTCGGTAATTCTAACCTATAGGGGTATTTTAGT
1 ATTTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTATAGGGGTATTTCAGT
* * **
100146672 ATTTCTACCCTACAACGGTATTTCGGTAATTCTACCCTTTAGCAGTATTTCAGT
1 ATTTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTATAGGGGTATTTCAGT
* * * *
100146726 AATTCTACCCTACAGGGGTGTTTCGATAATTCTACCCTATAGGGGTATTTCAGT
1 ATTTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTATAGGGGTATTTCAGT
* ** *
100146780 AATTCTACCCTAC-AGGGCTATTTCAATAATTCTACCCTATAGGGATATTTCAGT
1 ATTTCTACCCTACAAGGG-TATTTCGGTAATTCTACCCTATAGGGGTATTTCAGT
*
100146834 ATTTCTACCCTACAAGGGTATTTTGGTAATT
1 ATTTCTACCCTACAAGGGTATTTCGGTAATT
100146865 TTATAAATCG
Statistics
Matches: 166, Mismatches: 24, Indels: 5
0.85 0.12 0.03
Matches are distributed among these distances:
53 7 0.04
54 155 0.93
55 4 0.02
ACGTcount: A:0.26, C:0.21, G:0.16, T:0.37
Consensus pattern (54 bp):
ATTTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTATAGGGGTATTTCAGT
Found at i:100146878 original size:27 final size:27
Alignment explanation
Indices: 100146848--100147111 Score: 268
Period size: 27 Copynumber: 9.9 Consensus size: 27
100146838 CTACCCTACA
* *
100146848 AGGGTATTTTGGTAATTTTATAAATCG
1 AGGGTATTTCGGTAATTTTACAAATCG
* **
100146875 AGGGTATTTCAGTAATTTTAC-AATTA
1 AGGGTATTTCGGTAATTTTACAAATCG
* * * *
100146901 ACGGTATTTCAGTAATTTTATAAACCG
1 AGGGTATTTCGGTAATTTTACAAATCG
* *
100146928 GGGGTACTTT-GGTAATTTTACAAGTCG
1 AGGGTA-TTTCGGTAATTTTACAAATCG
* *
100146955 AGGGTATTTCAGTAATTTTGCAAATCG
1 AGGGTATTTCGGTAATTTTACAAATCG
* * **
100146982 AGGGTATTTCAGTAATTTTGCAAATTA
1 AGGGTATTTCGGTAATTTTACAAATCG
100147009 AGGGTATTTCGGTAATTTTACAAATCG
1 AGGGTATTTCGGTAATTTTACAAATCG
**
100147036 AGGGTATTTCAATAATTTTAC-AATCG
1 AGGGTATTTCGGTAATTTTACAAATCG
* * * *
100147062 ATGGTATTTCGATAATTTTATAAACCG
1 AGGGTATTTCGGTAATTTTACAAATCG
100147089 -GGGTACTTT-GGTAATTTTACAAA
1 AGGGTA-TTTCGGTAATTTTACAAA
100147112 CTAGGGGTAT
Statistics
Matches: 197, Mismatches: 35, Indels: 11
0.81 0.14 0.05
Matches are distributed among these distances:
26 64 0.32
27 130 0.66
28 3 0.02
ACGTcount: A:0.31, C:0.10, G:0.20, T:0.39
Consensus pattern (27 bp):
AGGGTATTTCGGTAATTTTACAAATCG
Found at i:100146883 original size:81 final size:79
Alignment explanation
Indices: 100146632--100146891 Score: 270
Period size: 81 Copynumber: 3.2 Consensus size: 79
100146622 TTACCCCACA
* * * * *
100146632 AGGGTATCTCGGTAATTCTAACCTATAGGGGTATTTTAGTATTTCTACCCTACAACGGTATTTCG
1 AGGGTATTTCAGTAATTCTACCCTATAGGGGTATTTCAGTATTTCTACCCTACAAGGGTATTTCG
*
100146697 GTAATTCTACCCTTT
66 GTAATTCTACCC-TC
* * * * * *
100146712 AGCAGTATTTCAGTAATTCTACCCTACAGGGGTGTTTC-GATAATTCTACCCTATAGGGGTATTT
1 AG-GGTATTTCAGTAATTCTACCCTATAGGGGTATTTCAG-TATTTCTACCCTACAAGGGTATTT
*
100146776 CAGTAATTCTACCCTAC
64 CGGTAATTCTACCCT-C
* * *
100146793 AGGGCTATTTCAATAATTCTACCCTATAGGGATATTTCAGTATTTCTACCCTACAAGGGTATTTT
1 AGGG-TATTTCAGTAATTCTACCCTATAGGGGTATTTCAGTATTTCTACCCTACAAGGGTATTTC
* ***
100146858 GGTAATTTTATAAATC
65 GGTAATTCTA-CCCTC
100146874 GAGGGTATTTCAGTAATT
1 -AGGGTATTTCAGTAATT
100146892 TTACAATTAA
Statistics
Matches: 145, Mismatches: 28, Indels: 13
0.78 0.15 0.07
Matches are distributed among these distances:
80 5 0.03
81 134 0.92
82 6 0.04
ACGTcount: A:0.27, C:0.18, G:0.17, T:0.38
Consensus pattern (79 bp):
AGGGTATTTCAGTAATTCTACCCTATAGGGGTATTTCAGTATTTCTACCCTACAAGGGTATTTCG
GTAATTCTACCCTC
Found at i:100146939 original size:80 final size:79
Alignment explanation
Indices: 100146849--100147111 Score: 341
Period size: 80 Copynumber: 3.3 Consensus size: 79
100146839 TACCCTACAA
* * **
100146849 GGGTATTTTGGTAATTTTATAAATCGAGGGTATTTCAGTAATTTTACAATTAACGGTATTTCAGT
1 GGGTACTTTGGTAATTTTACAAATCGAGGGTATTTCAGTAATTTTACAATCGACGGTATTTCAGT
100146914 AATTTTATAAACCGG
66 AATTTTATAAACC-G
* * *
100146929 GGGTACTTTGGTAATTTTACAAGTCGAGGGTATTTCAGTAATTTTGCAAATCGAGGGTATTTCAG
1 GGGTACTTTGGTAATTTTACAAATCGAGGGTATTTCAGTAATTTTAC-AATCGACGGTATTTCAG
** ***
100146994 TAATTTTGCAAATTAA
65 TAATTTTATAAA-CCG
* *
100147010 GGGTA-TTTCGGTAATTTTACAAATCGAGGGTATTTCAATAATTTTACAATCGATGGTATTTC-G
1 GGGTACTTT-GGTAATTTTACAAATCGAGGGTATTTCAGTAATTTTACAATCGACGGTATTTCAG
100147073 ATAATTTTATAAACCG
65 -TAATTTTATAAACCG
100147089 GGGTACTTTGGTAATTTTACAAA
1 GGGTACTTTGGTAATTTTACAAA
100147112 CTAGGGGTAT
Statistics
Matches: 157, Mismatches: 21, Indels: 11
0.83 0.11 0.06
Matches are distributed among these distances:
79 20 0.13
80 73 0.46
81 64 0.41
ACGTcount: A:0.31, C:0.10, G:0.20, T:0.40
Consensus pattern (79 bp):
GGGTACTTTGGTAATTTTACAAATCGAGGGTATTTCAGTAATTTTACAATCGACGGTATTTCAGT
AATTTTATAAACCG
Found at i:100159690 original size:15 final size:14
Alignment explanation
Indices: 100159672--100159731 Score: 66
Period size: 15 Copynumber: 4.0 Consensus size: 14
100159662 GATAAGAAGA
*
100159672 CCAAAATAAAGAAAT
1 CCAAGATAAA-AAAT
100159687 CCAAGATAGAAAAAT
1 CCAAGATA-AAAAAT
*
100159702 CCAAGATGAATAAAT
1 CCAAGAT-AAAAAAT
100159717 CCAAGATACAAAAAT
1 CCAAGATA-AAAAAT
100159732 ACAATATACG
Statistics
Matches: 39, Mismatches: 3, Indels: 6
0.81 0.06 0.12
Matches are distributed among these distances:
14 1 0.03
15 35 0.90
16 3 0.08
ACGTcount: A:0.60, C:0.15, G:0.10, T:0.15
Consensus pattern (14 bp):
CCAAGATAAAAAAT
Found at i:100167920 original size:20 final size:19
Alignment explanation
Indices: 100167909--100167989 Score: 92
Period size: 19 Copynumber: 4.2 Consensus size: 19
100167899 ATTTATATAT
100167909 ATAA-ATTTTAATATATTA
1 ATAATATTTTAATATATTA
*
100167927 ATAATATTTTAATATCTTA
1 ATAATATTTTAATATATTA
*
100167946 ATAATATTTAATAATATATAA
1 ATAATATTT--TAATATATTA
* *
100167967 ATAATATTAATAATATAATA
1 ATAATATT-TTAATATATTA
100167987 ATA
1 ATA
100167990 TAGAAAGAAA
Statistics
Matches: 53, Mismatches: 6, Indels: 6
0.82 0.09 0.09
Matches are distributed among these distances:
18 4 0.08
19 22 0.42
20 11 0.21
21 16 0.30
ACGTcount: A:0.53, C:0.01, G:0.00, T:0.46
Consensus pattern (19 bp):
ATAATATTTTAATATATTA
Found at i:100167933 original size:11 final size:11
Alignment explanation
Indices: 100167917--100167989 Score: 77
Period size: 11 Copynumber: 7.2 Consensus size: 11
100167907 ATATAAATTT
100167917 TAATATATTAA
1 TAATATATTAA
100167928 TAATAT-TT--
1 TAATATATTAA
*
100167936 TAATATCTTAA
1 TAATATATTAA
100167947 TAATAT-TTAA
1 TAATATATTAA
*
100167957 TAATATATAAA
1 TAATATATTAA
100167968 T-A-ATATTAA
1 TAATATATTAA
*
100167977 TAATATAATAA
1 TAATATATTAA
100167988 TA
1 TA
100167990 TAGAAAGAAA
Statistics
Matches: 53, Mismatches: 3, Indels: 12
0.78 0.04 0.18
Matches are distributed among these distances:
8 6 0.11
9 9 0.17
10 14 0.26
11 24 0.45
ACGTcount: A:0.53, C:0.01, G:0.00, T:0.45
Consensus pattern (11 bp):
TAATATATTAA
Found at i:100168003 original size:30 final size:29
Alignment explanation
Indices: 100167943--100168003 Score: 70
Period size: 30 Copynumber: 2.0 Consensus size: 29
100167933 TTTTAATATC
* *
100167943 TTAATAATATTTAATAATATATAAATAATA
1 TTAATAATA-TTAATAATATAAAAAAAATA
100167973 TTAATAATA-TAATAATATAGAAAGAAAATA
1 TTAATAATATTAATAATATA-AAA-AAAATA
100168003 T
1 T
100168004 GTGTTATATA
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
28 10 0.37
29 2 0.07
30 15 0.56
ACGTcount: A:0.59, C:0.00, G:0.03, T:0.38
Consensus pattern (29 bp):
TTAATAATATTAATAATATAAAAAAAATA
Found at i:100168683 original size:64 final size:64
Alignment explanation
Indices: 100168578--100168785 Score: 188
Period size: 67 Copynumber: 3.2 Consensus size: 64
100168568 CATCATGTGT
*
100168578 ACAAGAGAGCTACAAGACATAATGATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATG
1 ACAAGAGAGCTAC--GAGATAA--ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATG
100168643 TAG
62 TAG
* * * * * * * *
100168646 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGT
1 ACAAGAGAGCTACGAGATAAATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACCATGT
100168711 AG
63 AG
* * * * *
100168713 ACAAGAGAGCTATGAGATAAACTG--GCTAGGTCACATGGGTGGTACTAAGTGTTCACCATGT-G
1 ACAAGAGAGCTACGAGATAAA-TGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAG
100168775 TACAAGAGAGC
1 -ACAAGAGAGC
100168786 CGAACTATAT
Statistics
Matches: 114, Mismatches: 21, Indels: 15
0.76 0.14 0.10
Matches are distributed among these distances:
62 1 0.01
63 19 0.17
64 21 0.18
65 8 0.07
66 20 0.18
67 30 0.26
68 15 0.13
ACGTcount: A:0.32, C:0.17, G:0.29, T:0.22
Consensus pattern (64 bp):
ACAAGAGAGCTACGAGATAAATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAG
Found at i:100174822 original size:46 final size:46
Alignment explanation
Indices: 100174755--100175620 Score: 1562
Period size: 46 Copynumber: 18.8 Consensus size: 46
100174745 TATTTGGGCA
100174755 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAATG
100174801 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAATG
100174847 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAATG
100174893 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAATG
100174939 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAATG
100174985 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAATG
100175031 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAATG
100175077 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAATG
100175123 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAATG
100175169 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAATG
100175215 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAATG
100175261 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAATG
100175307 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAATG
100175353 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAATG
100175399 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAATG
100175445 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAATG
* *
100175491 TCCGAACTCGTTGAGTTGAGTCCGAGTT----TGTGAGATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATG-GATGCGAA-T--G
* * *
100175536 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATACGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAATG
* * * *
100175584 CCCGAGCTCTTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGG
100175621 GCGGGTTACA
Statistics
Matches: 800, Mismatches: 9, Indels: 22
0.96 0.01 0.03
Matches are distributed among these distances:
42 5 0.01
43 5 0.01
45 1 0.00
46 752 0.94
47 28 0.04
48 1 0.00
50 3 0.00
51 5 0.01
ACGTcount: A:0.22, C:0.22, G:0.28, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAATG
Found at i:100178593 original size:15 final size:15
Alignment explanation
Indices: 100178573--100178641 Score: 84
Period size: 15 Copynumber: 4.6 Consensus size: 15
100178563 GTATCTTGGG
100178573 TTTCTTTATCCTGGA
1 TTTCTTTATCCTGGA
* *
100178588 TCTCTTTATTCTGGA
1 TTTCTTTATCCTGGA
* *
100178603 TTTCTTTATTCTGGG
1 TTTCTTTATCCTGGA
* *
100178618 TTTCTCTATCTTGGA
1 TTTCTTTATCCTGGA
100178633 TTTCTTTAT
1 TTTCTTTAT
100178642 TCGGTTTTCT
Statistics
Matches: 45, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
15 45 1.00
ACGTcount: A:0.12, C:0.17, G:0.13, T:0.58
Consensus pattern (15 bp):
TTTCTTTATCCTGGA
Found at i:100178642 original size:30 final size:30
Alignment explanation
Indices: 100178564--100178651 Score: 99
Period size: 30 Copynumber: 3.0 Consensus size: 30
100178554 CATTGTATCG
* * * *
100178564 TATCTTGGGTTTCTTTATCCTGGATCTCTT
1 TATCTTGGATTTCTTTATTCTGGATTTCTC
*
100178594 TAT-TCTGGATTTCTTTATTCTGGGTTTCTC
1 TATCT-TGGATTTCTTTATTCTGGATTTCTC
*
100178624 TATCTTGGATTTCTTTATTC-GGTTTTCT
1 TATCTTGGATTTCTTTATTCTGGATTTCT
100178652 TGTTATCTTT
Statistics
Matches: 50, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
29 8 0.16
30 41 0.82
31 1 0.02
ACGTcount: A:0.10, C:0.17, G:0.16, T:0.57
Consensus pattern (30 bp):
TATCTTGGATTTCTTTATTCTGGATTTCTC
Found at i:100178932 original size:101 final size:100
Alignment explanation
Indices: 100178783--100178983 Score: 375
Period size: 101 Copynumber: 2.0 Consensus size: 100
100178773 AGTATTGGGA
*
100178783 TTTTTTCTAATTTCTGTGTAAGGATTTGACATCAGTAAAGGCATAGGTGATAAAAGCGCGAGTTT
1 TTTTTTCTAATTTCTGGGTAAGGATTTGACATCAGTAAAGGCATAGGTGATAAAAGCGCGAGTTT
*
100178848 CAGTCGGTAGGGTGAATTATTTATTTGCAAGATTTC
66 CAGTC-GTAGGGTGAATTATTTATTTGAAAGATTTC
100178884 TTTTTTCTAATTTCTGGGTAAGGATTTGACATCAGTAAAGGCATAGGTGATAAAAGCGCGAGTTT
1 TTTTTTCTAATTTCTGGGTAAGGATTTGACATCAGTAAAGGCATAGGTGATAAAAGCGCGAGTTT
100178949 CAGTCGTAGGGTGAATTATTTATTTGAAAGATTTC
66 CAGTCGTAGGGTGAATTATTTATTTGAAAGATTTC
100178984 ATGTGACTAT
Statistics
Matches: 98, Mismatches: 2, Indels: 1
0.97 0.02 0.01
Matches are distributed among these distances:
100 29 0.30
101 69 0.70
ACGTcount: A:0.28, C:0.10, G:0.24, T:0.37
Consensus pattern (100 bp):
TTTTTTCTAATTTCTGGGTAAGGATTTGACATCAGTAAAGGCATAGGTGATAAAAGCGCGAGTTT
CAGTCGTAGGGTGAATTATTTATTTGAAAGATTTC
Found at i:100181903 original size:84 final size:84
Alignment explanation
Indices: 100181761--100181924 Score: 301
Period size: 84 Copynumber: 2.0 Consensus size: 84
100181751 ATGAATTGTA
*
100181761 TGAGCTGTTTAATTAACGAATTAAGTCCGTTAACACCTCGTGTTCGACTCCGGCAACGGTCTCGG
1 TGAGCTGTTCAATTAACGAATTAAGTCCGTTAACACCTCGTGTTCGACTCCGGCAACGGTCTCGG
100181826 GTACGGGGTGTTACATTTG
66 GTACGGGGTGTTACATTTG
* *
100181845 TGAGCTGTTCAATTAATGAATTAAGTCCGTTAACACCTCGTGTTCGACTCCGGGAACGGTCTCGG
1 TGAGCTGTTCAATTAACGAATTAAGTCCGTTAACACCTCGTGTTCGACTCCGGCAACGGTCTCGG
100181910 GTACGGGGTGTTACA
66 GTACGGGGTGTTACA
100181925 CACAAGGTAG
Statistics
Matches: 77, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
84 77 1.00
ACGTcount: A:0.22, C:0.21, G:0.27, T:0.30
Consensus pattern (84 bp):
TGAGCTGTTCAATTAACGAATTAAGTCCGTTAACACCTCGTGTTCGACTCCGGCAACGGTCTCGG
GTACGGGGTGTTACATTTG
Found at i:100189450 original size:82 final size:82
Alignment explanation
Indices: 100189354--100189516 Score: 308
Period size: 82 Copynumber: 2.0 Consensus size: 82
100189344 CTAAGTTCTT
*
100189354 AACCCTAGGGTTTAAACACATACCTGTCAAATTTTCTTATTCATCACACTTACCAACATGTCACC
1 AACCCGAGGGTTTAAACACATACCTGTCAAATTTTCTTATTCATCACACTTACCAACATGTCACC
*
100189419 TTTGTATTAGGCATTCC
66 TTCGTATTAGGCATTCC
100189436 AACCCGAGGGTTTAAACACATACCTGTCAAATTTTCTTATTCATCACACTTACCAACATGTCACC
1 AACCCGAGGGTTTAAACACATACCTGTCAAATTTTCTTATTCATCACACTTACCAACATGTCACC
100189501 TTCGTATTAGGCATTC
66 TTCGTATTAGGCATTC
100189517 TCCTTATTCT
Statistics
Matches: 79, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
82 79 1.00
ACGTcount: A:0.29, C:0.27, G:0.10, T:0.33
Consensus pattern (82 bp):
AACCCGAGGGTTTAAACACATACCTGTCAAATTTTCTTATTCATCACACTTACCAACATGTCACC
TTCGTATTAGGCATTCC
Found at i:100196977 original size:14 final size:14
Alignment explanation
Indices: 100196958--100196984 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
100196948 TTTTAATAAC
100196958 TAAGTAAAGATACA
1 TAAGTAAAGATACA
100196972 TAAGTAAAGATAC
1 TAAGTAAAGATAC
100196985 CACACATTTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.56, C:0.07, G:0.15, T:0.22
Consensus pattern (14 bp):
TAAGTAAAGATACA
Found at i:100212558 original size:29 final size:30
Alignment explanation
Indices: 100212478--100212568 Score: 94
Period size: 31 Copynumber: 3.0 Consensus size: 30
100212468 TGCATGATTA
* * *
100212478 AAACAAAATTAAAGTTTCAAGTGTACATTT
1 AAACCAAATTAAAGTTTCATGTGTACAATT
* *
100212508 AAACCACAATTAGAGTTTCATGCGTACAATT
1 AAACCA-AATTAAAGTTTCATGTGTACAATT
** *
100212539 GCACCAAATTAAAG-TTCATGTATACAATT
1 AAACCAAATTAAAGTTTCATGTGTACAATT
100212568 A
1 A
100212569 CACATTAAAT
Statistics
Matches: 49, Mismatches: 11, Indels: 3
0.78 0.17 0.05
Matches are distributed among these distances:
29 13 0.27
30 12 0.24
31 24 0.49
ACGTcount: A:0.43, C:0.15, G:0.11, T:0.31
Consensus pattern (30 bp):
AAACCAAATTAAAGTTTCATGTGTACAATT
Found at i:100214402 original size:20 final size:21
Alignment explanation
Indices: 100214342--100214413 Score: 60
Period size: 20 Copynumber: 3.6 Consensus size: 21
100214332 TACTTCGGTA
*
100214342 CCCTAAATGCACATTT-TTGC
1 CCCTAAATGCACATTTGATGC
*** *
100214362 CCCTGTTTGTAC-TTTGATGC
1 CCCTAAATGCACATTTGATGC
*
100214382 CCTTAAATGCACATTTG-TGC
1 CCCTAAATGCACATTTGATGC
*
100214402 CCCTAATTGCAC
1 CCCTAAATGCAC
100214414 TTCGGTGCCC
Statistics
Matches: 38, Mismatches: 12, Indels: 4
0.70 0.22 0.07
Matches are distributed among these distances:
19 3 0.08
20 31 0.82
21 4 0.11
ACGTcount: A:0.21, C:0.29, G:0.14, T:0.36
Consensus pattern (21 bp):
CCCTAAATGCACATTTGATGC
Found at i:100214416 original size:79 final size:78
Alignment explanation
Indices: 100214160--100214436 Score: 331
Period size: 79 Copynumber: 3.5 Consensus size: 78
100214150 AAATAAAGAA
* * *
100214160 GTGCCCTTGTTTGTACTTCGGTACCGCTGAATGCACATTTGTGCCACTGTTTGTACTTCGGTACC
1 GTGCCCCTATTTGTACTTCGGTACC-CTGAATGCACATTTGTGCCCCTGTTTGTACTTCGGTA-C
*
100214225 CCTGAATGCACATTT
64 CCTAAATGCACATTT
* * *
100214240 GTGCCCCTATTTGTACTTCGATACCCTTGAATGCACATTTGTGCCCATGTTTGTGCTTCGGTACC
1 GTGCCCCTATTTGTACTTCGGTACCC-TGAATGCACATTTGTGCCCCTGTTTGTACTTCGGTACC
*
100214305 CTAAATGCACATCT
65 CTAAATGCACATTT
* * * * * * *
100214319 GTGCCCCTGTTTTTACTTCGGTACCCTAAATGCACATTTTTGCCCCTGTTTGTACTTTGATGCCC
1 GTGCCCCTATTTGTACTTCGGTACCCTGAATGCACATTTGTGCCCCTGTTTGTACTTCGGTACCC
100214384 TTAAATGCACATTT
66 -TAAATGCACATTT
* * *
100214398 GTGCCCCTAATTGCACTTCGGTGCCCCTG-ATCGCACATT
1 GTGCCCCTATTTGTACTTCGGT-ACCCTGAAT-GCACATT
100214437 CATGCTTCTG
Statistics
Matches: 168, Mismatches: 25, Indels: 8
0.84 0.12 0.04
Matches are distributed among these distances:
78 32 0.19
79 70 0.42
80 66 0.39
ACGTcount: A:0.17, C:0.28, G:0.18, T:0.36
Consensus pattern (78 bp):
GTGCCCCTATTTGTACTTCGGTACCCTGAATGCACATTTGTGCCCCTGTTTGTACTTCGGTACCC
TAAATGCACATTT
Found at i:100214423 original size:40 final size:39
Alignment explanation
Indices: 100214160--100214419 Score: 322
Period size: 40 Copynumber: 6.6 Consensus size: 39
100214150 AAATAAAGAA
* *
100214160 GTGCCCTTGTTTGTACTTCGGTACCGCTGAATGCACATTT
1 GTGCCCCTGTTTGTACTTCGGTACC-CTAAATGCACATTT
* *
100214200 GTGCCACTGTTTGTACTTCGGTACCCCTGAATGCACATTT
1 GTGCCCCTGTTTGTACTTCGGTA-CCCTAAATGCACATTT
* * *
100214240 GTGCCCCTATTTGTACTTCGATACCCTTGAATGCACATTT
1 GTGCCCCTGTTTGTACTTCGGTACCC-TAAATGCACATTT
* * *
100214280 GTGCCCATGTTTGTGCTTCGGTACCCTAAATGCACATCT
1 GTGCCCCTGTTTGTACTTCGGTACCCTAAATGCACATTT
*
100214319 GTGCCCCTGTTTTTACTTCGGTACCCTAAATGCACATTT
1 GTGCCCCTGTTTGTACTTCGGTACCCTAAATGCACATTT
* * * *
100214358 TTGCCCCTGTTTGTACTTTGATGCCCTTAAATGCACATTT
1 GTGCCCCTGTTTGTACTTCGGTACCC-TAAATGCACATTT
** *
100214398 GTGCCCCTAATTGCACTTCGGT
1 GTGCCCCTGTTTGTACTTCGGT
100214420 GCCCCTGATC
Statistics
Matches: 191, Mismatches: 26, Indels: 6
0.86 0.12 0.03
Matches are distributed among these distances:
39 70 0.37
40 119 0.62
41 2 0.01
ACGTcount: A:0.17, C:0.27, G:0.18, T:0.37
Consensus pattern (39 bp):
GTGCCCCTGTTTGTACTTCGGTACCCTAAATGCACATTT
Found at i:100214996 original size:20 final size:19
Alignment explanation
Indices: 100214971--100215042 Score: 65
Period size: 20 Copynumber: 3.6 Consensus size: 19
100214961 AGAAACATTT
100214971 GTGCCCTTGATTACACTTCG
1 GTGCCCTT-ATTACACTTCG
*
100214991 GTGCCCCTTATCACACGTTC-
1 GTG-CCCTTATTACAC-TTCG
* * *
100215011 GTGCTCTTGATTGCACTTTG
1 GTGCCCTT-ATTACACTTCG
100215031 GTGCCCTTATTA
1 GTGCCCTTATTA
100215043 TGCATCTATG
Statistics
Matches: 41, Mismatches: 7, Indels: 9
0.72 0.12 0.16
Matches are distributed among these distances:
19 9 0.22
20 24 0.59
21 8 0.20
ACGTcount: A:0.14, C:0.29, G:0.19, T:0.38
Consensus pattern (19 bp):
GTGCCCTTATTACACTTCG
Found at i:100218735 original size:40 final size:40
Alignment explanation
Indices: 100218660--100218923 Score: 374
Period size: 40 Copynumber: 6.6 Consensus size: 40
100218650 AACCCAAGTA
*
100218660 CCTTCGGGATTTAG-CCGGATATAG-CAACTCA-CACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAA-T-AGCACAAATG
*
100218699 CCTTCGGGTCTTAGCCCGGATATAGTCAATAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
* *
100218739 CCTTCGGGATTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
*
100218779 CCTTCGGGACTTAGCCCAGATATAGTCAATAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
* *
100218819 CCTTCGAGACTTAGCCCGGATATAGTCAATA-CATCCAGGATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCA--CA-AATG
* *
100218861 CCTTCGGGACTTAGCCCGAATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
100218901 CCTTCGGGACTTAGCCCGGATAT
1 CCTTCGGGACTTAGCCCGGATAT
100218924 CATTCGAATA
Statistics
Matches: 202, Mismatches: 16, Indels: 13
0.87 0.07 0.06
Matches are distributed among these distances:
39 15 0.07
40 147 0.73
41 7 0.03
42 31 0.15
43 2 0.01
ACGTcount: A:0.28, C:0.26, G:0.22, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
Found at i:100218902 original size:122 final size:120
Alignment explanation
Indices: 100218660--100218923 Score: 392
Period size: 122 Copynumber: 2.2 Consensus size: 120
100218650 AACCCAAGTA
* * *
100218660 CCTTCGGGATTTAG-CCGGATATAGCAACTCACACAAATGCCTTCGGGTCTTAGCCCGGATATAG
1 CCTTCGGGACTTAGCCCGGATATAGCAACTCACACAAATGCCTTCGAGACTTAGCCCGGATATAG
* *
100218724 TCAATAGCACAAATGCCTTCGGGATTTAGCCCGGATATAGTCACTAGCACAAATG
66 TCAATAGCACAAATGCCTTCGGGACTTAGCCCGAATATAGTCACTAGCACAAATG
*
100218779 CCTTCGGGACTTAGCCCAGATATAGTCAA-T-AGCACAAATGCCTTCGAGACTTAGCCCGGATAT
1 CCTTCGGGACTTAGCCCGGATATAG-CAACTCA-CACAAATGCCTTCGAGACTTAGCCCGGATAT
*
100218842 AGTCAATA-CATCCAGGATGCCTTCGGGACTTAGCCCGAATATAGTCACTAGCACAAATG
64 AGTCAATAGCA--CA-AATGCCTTCGGGACTTAGCCCGAATATAGTCACTAGCACAAATG
100218901 CCTTCGGGACTTAGCCCGGATAT
1 CCTTCGGGACTTAGCCCGGATAT
100218924 CATTCGAATA
Statistics
Matches: 131, Mismatches: 8, Indels: 9
0.89 0.05 0.06
Matches are distributed among these distances:
119 16 0.12
120 47 0.36
121 5 0.04
122 63 0.48
ACGTcount: A:0.28, C:0.26, G:0.22, T:0.24
Consensus pattern (120 bp):
CCTTCGGGACTTAGCCCGGATATAGCAACTCACACAAATGCCTTCGAGACTTAGCCCGGATATAG
TCAATAGCACAAATGCCTTCGGGACTTAGCCCGAATATAGTCACTAGCACAAATG
Done.