Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr3
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 100348136
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 3062571 characters in sequence are not A, C, G, or T
File 29 of 290
Found at i:9881853 original size:93 final size:93
Alignment explanation
Indices: 9881605--9881869 Score: 324
Period size: 93 Copynumber: 2.9 Consensus size: 93
9881595 TTGGATATAT
* * * *
9881605 TGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATATACGCGTGCTGATGCATGTCC
1 TGCCGATGCCATGTCCCAGACATCGTCTTACACTGGCTATCATA-ATGTG-GCTGATGCATGTCC
*
9881670 CAGACATGTCTTACACTAGCACAACTCTTA
64 CAGACATGTCTTACACTAGCACAACTCTGA
* *
9881700 -GCCGATG-CATGTCCCAGACA-CGTCTTACACTGGCTATCATAGTATGGCTGATGCATGTCCCA
1 TGCCGATGCCATGTCCCAGACATCGTCTTACACTGGCTATCATAATGTGGCTGATGCATGTCCCA
**
9881762 GACATGTCTTACACTAGC-CCTCGTCTGGA
66 GACATGTCTTACACTAGCACAAC-TCT-GA
* ** * * *
9881791 TGCCGATGCCATGT-CCAGATATTTTCTTACATTGGCTATCATAATGTGGCCGAAGCATGTCCCA
1 TGCCGATGCCATGTCCCAGACATCGTCTTACACTGGCTATCATAATGTGGCTGATGCATGTCCCA
9881855 GACATGTCTTACACT
66 GACATGTCTTACACT
9881870 GGCGCCCAAA
Statistics
Matches: 148, Mismatches: 17, Indels: 12
0.84 0.10 0.07
Matches are distributed among these distances:
89 2 0.01
90 37 0.25
91 2 0.01
92 32 0.22
93 68 0.46
94 7 0.05
ACGTcount: A:0.23, C:0.29, G:0.20, T:0.28
Consensus pattern (93 bp):
TGCCGATGCCATGTCCCAGACATCGTCTTACACTGGCTATCATAATGTGGCTGATGCATGTCCCA
GACATGTCTTACACTAGCACAACTCTGA
Found at i:9882252 original size:30 final size:30
Alignment explanation
Indices: 9882211--9882268 Score: 98
Period size: 30 Copynumber: 1.9 Consensus size: 30
9882201 AAATTTACAT
* *
9882211 CTTTGGTAAAATGACCATTTTGCCCCTAGA
1 CTTTGGCAAAATGACCATTTTACCCCTAGA
9882241 CTTTGGCAAAATGACCATTTTACCCCTA
1 CTTTGGCAAAATGACCATTTTACCCCTA
9882269 TGCCCGAAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.14, T:0.33
Consensus pattern (30 bp):
CTTTGGCAAAATGACCATTTTACCCCTAGA
Found at i:9884081 original size:27 final size:27
Alignment explanation
Indices: 9884051--9884144 Score: 107
Period size: 27 Copynumber: 3.5 Consensus size: 27
9884041 TGCGCCTTTG
* * *
9884051 AGATAGGCACAACTAGTTGCACCTGTC
1 AGATAGGCTCAACTAGTCGCACCTCTC
* *
9884078 AGATAGGTTCAACTAGTCGCACCTCTG
1 AGATAGGCTCAACTAGTCGCACCTCTC
* ** *
9884105 AGAAAGGCTCAACTAGTCGTGCCTCTG
1 AGATAGGCTCAACTAGTCGCACCTCTC
9884132 AGATAGGCTCAAC
1 AGATAGGCTCAAC
9884145 CTGTATTCGT
Statistics
Matches: 57, Mismatches: 10, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 57 1.00
ACGTcount: A:0.29, C:0.26, G:0.23, T:0.22
Consensus pattern (27 bp):
AGATAGGCTCAACTAGTCGCACCTCTC
Found at i:9885314 original size:24 final size:24
Alignment explanation
Indices: 9885261--9885322 Score: 65
Period size: 24 Copynumber: 2.7 Consensus size: 24
9885251 TTTGGAATCC
*
9885261 AAAGCT-AAATGT-AAAATTATCG
1 AAAGCTAAAATCTAAAAATTATCG
*
9885283 AAAGCTAAAATCTAAAAATTATTG
1 AAAGCTAAAATCTAAAAATTATCG
* * *
9885307 ATATCTAAATTCTAAA
1 AAAGCTAAAATCTAAA
9885323 TAAAAACTTA
Statistics
Matches: 33, Mismatches: 5, Indels: 2
0.82 0.12 0.05
Matches are distributed among these distances:
22 6 0.18
23 5 0.15
24 22 0.67
ACGTcount: A:0.52, C:0.10, G:0.08, T:0.31
Consensus pattern (24 bp):
AAAGCTAAAATCTAAAAATTATCG
Found at i:9887251 original size:42 final size:42
Alignment explanation
Indices: 9887204--9887354 Score: 185
Period size: 42 Copynumber: 3.6 Consensus size: 42
9887194 TAAGTCTATG
* *
9887204 TGTAAGACCATATCTGGGATATGACAACAATATGAGATTTCA
1 TGTAAGACCATATCTGGGATATGGCATCAATATGAGATTTCA
* * *
9887246 TGTAAGACCATAACTGGGATATGGCATCAATGTGAGATTTCG
1 TGTAAGACCATATCTGGGATATGGCATCAATATGAGATTTCA
* * * ** * *
9887288 TGTAAGACCATAGCTGGGTTATTGGCATCGATACAATATTACA
1 TGTAAGACCATATCTGGGATA-TGGCATCAATATGAGATTTCA
9887331 TGTAAGACCATATCTGGGATATGG
1 TGTAAGACCATATCTGGGATATGG
9887355 TATTGGTATG
Statistics
Matches: 92, Mismatches: 16, Indels: 2
0.84 0.15 0.02
Matches are distributed among these distances:
42 59 0.64
43 33 0.36
ACGTcount: A:0.33, C:0.15, G:0.23, T:0.29
Consensus pattern (42 bp):
TGTAAGACCATATCTGGGATATGGCATCAATATGAGATTTCA
Found at i:9893805 original size:49 final size:49
Alignment explanation
Indices: 9893739--9893848 Score: 141
Period size: 49 Copynumber: 2.3 Consensus size: 49
9893729 GATATGTCTG
9893739 GGACAT-GCATTGGCCTCGAGATATGCAAGCCAATGTAAAACCTATCTA
1 GGACATGGCATTGGCCTCGAGATATGCAAGCCAATGTAAAACCTATCTA
* * * * * * * *
9893787 GGACATGGCATTGGCCTCGATATATGGAAGTCAGTGTAAGACCTGTTTG
1 GGACATGGCATTGGCCTCGAGATATGCAAGCCAATGTAAAACCTATCTA
9893836 GGACATGGCATTG
1 GGACATGGCATTG
9893849 TGTAAGACCT
Statistics
Matches: 53, Mismatches: 8, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
48 6 0.11
49 47 0.89
ACGTcount: A:0.28, C:0.19, G:0.27, T:0.25
Consensus pattern (49 bp):
GGACATGGCATTGGCCTCGAGATATGCAAGCCAATGTAAAACCTATCTA
Found at i:9893860 original size:28 final size:28
Alignment explanation
Indices: 9893820--9893873 Score: 90
Period size: 28 Copynumber: 1.9 Consensus size: 28
9893810 ATGGAAGTCA
* *
9893820 GTGTAAGACCTGTTTGGGACATGGCATT
1 GTGTAAGACCTGTCTGGAACATGGCATT
9893848 GTGTAAGACCTGTCTGGAACATGGCA
1 GTGTAAGACCTGTCTGGAACATGGCA
9893874 ATGACTTAGA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
28 24 1.00
ACGTcount: A:0.24, C:0.17, G:0.31, T:0.28
Consensus pattern (28 bp):
GTGTAAGACCTGTCTGGAACATGGCATT
Found at i:9898086 original size:42 final size:42
Alignment explanation
Indices: 9898023--9898173 Score: 169
Period size: 42 Copynumber: 3.6 Consensus size: 42
9898013 CTAAGTCTAT
* * *
9898023 GTGTAGGACCATATCTAGGATATGATAT-GAATATGAGATTTC
1 GTGTAAGACCATATCTGGGATATGACATCG-ATATGAGATTTC
*
9898065 GTGTAAGACCATATCTGGGATATGACATCGATGTGAGATTTC
1 GTGTAAGACCATATCTGGGATATGACATCGATATGAGATTTC
* * * * * * *
9898107 GTATAAGACTATAGCTGGGCTATTAGCATCGATACGAGATTAC
1 GTGTAAGACCATATCTGGGATATGA-CATCGATATGAGATTTC
*
9898150 ATGTAAGACCATATCTGGGATATG
1 GTGTAAGACCATATCTGGGATATG
9898174 GCATTGGTAT
Statistics
Matches: 89, Mismatches: 18, Indels: 3
0.81 0.16 0.03
Matches are distributed among these distances:
42 56 0.63
43 33 0.37
ACGTcount: A:0.32, C:0.13, G:0.25, T:0.30
Consensus pattern (42 bp):
GTGTAAGACCATATCTGGGATATGACATCGATATGAGATTTC
Found at i:9899243 original size:13 final size:13
Alignment explanation
Indices: 9899225--9899256 Score: 64
Period size: 13 Copynumber: 2.5 Consensus size: 13
9899215 AGCATATGGG
9899225 CGTGTGACTTGGC
1 CGTGTGACTTGGC
9899238 CGTGTGACTTGGC
1 CGTGTGACTTGGC
9899251 CGTGTG
1 CGTGTG
9899257 TCTTCAATTT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.06, C:0.22, G:0.41, T:0.31
Consensus pattern (13 bp):
CGTGTGACTTGGC
Found at i:9903953 original size:16 final size:16
Alignment explanation
Indices: 9903929--9903971 Score: 68
Period size: 16 Copynumber: 2.7 Consensus size: 16
9903919 TGGTTCACTA
*
9903929 TAATGGAATAGGGTTG
1 TAATGGAATAGGATTG
*
9903945 TAATTGAATAGGATTG
1 TAATGGAATAGGATTG
9903961 TAATGGAATAG
1 TAATGGAATAG
9903972 AGCTGTAATC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 24 1.00
ACGTcount: A:0.37, C:0.00, G:0.30, T:0.33
Consensus pattern (16 bp):
TAATGGAATAGGATTG
Found at i:9904015 original size:46 final size:43
Alignment explanation
Indices: 9903962--9904054 Score: 125
Period size: 44 Copynumber: 2.1 Consensus size: 43
9903952 ATAGGATTGT
9903962 AATGGAATAGAGCTGTAATCAGTAATTCAATTG-TTTGGTTGAATGG
1 AATGGAATAGAGCTGTAAT-AGT-ATTC--TTGATTTGGTTGAATGG
*
9904008 AATGGAATAGAGTTGTAATAGTATTCTTGTATTTGGTTGAATGG
1 AATGGAATAGAGCTGTAATAGTATTCTTG-ATTTGGTTGAATGG
9904052 AAT
1 AAT
9904055 AAATATTGTA
Statistics
Matches: 44, Mismatches: 1, Indels: 6
0.86 0.02 0.12
Matches are distributed among these distances:
42 3 0.07
44 20 0.45
45 3 0.07
46 18 0.41
ACGTcount: A:0.32, C:0.04, G:0.26, T:0.38
Consensus pattern (43 bp):
AATGGAATAGAGCTGTAATAGTATTCTTGATTTGGTTGAATGG
Found at i:9906997 original size:142 final size:140
Alignment explanation
Indices: 9906693--9907059 Score: 415
Period size: 142 Copynumber: 2.6 Consensus size: 140
9906683 GGGTGATTTG
* * * * *
9906693 TGTGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAAACGAGTGCTAGTGTACGA-C
1 TGTG-CAGTGTAAGACCATGTCTGGGACATGGCATCGACATCGATACGAGAGCTAGTGTAAGACC
* * * *
9906757 ATGTCCGGGACAT-GCATCGGCCTCGAGATGTAAGCTAGTGTAAGACATGTCTGGGACATGCATC
65 ATGTCTGGGACATGGCATCAGCCTCGAAATGTAAGCCAGTGTAAGACATGTCTGGGACATGCATC
9906821 AACTATGAGACA
130 AACTA-GAGACA
* *
9906833 TGT-CAGTGGAAGACCATGTCTGGGACATGGCATCGACATGGATACGCAAGAGCTAGTGTAAGAC
1 TGTGCAGTGTAAGACCATGTCTGGGACATGGCATCGACATCGATACG--AGAGCTAGTGTAAGAC
*
9906897 CATGTTTGGGACATGGCATCAGCCTCGATAATG-ATAGCCAGTGTAAGACATGTCTGGGACAT-C
64 CATGTCTGGGACATGGCATCAGCCTCGA-AATGTA-AGCCAGTGTAAGACATGTCTGGGACATGC
** **
9906960 ATCGGCTA-AGAGT
127 ATCAACTAGAGACA
* * * *
9906973 TGTGCTAGTGTAAGACCATGTCTGGGACATGGCATC-AGCCTCGATGAGGATAGCCAGTGTAAGA
1 TGTGC-AGTGTAAGACCATGTCTGGGACATGGCATCGA-CATCGAT-ACGAGAGCTAGTGTAAGA
*
9907037 CCATGTCTGGGACATGCCATCAG
63 CCATGTCTGGGACATGGCATCAG
9907060 TAACTTAATC
Statistics
Matches: 194, Mismatches: 23, Indels: 19
0.82 0.10 0.08
Matches are distributed among these distances:
138 39 0.20
140 22 0.11
141 48 0.25
142 54 0.28
143 31 0.16
ACGTcount: A:0.27, C:0.20, G:0.29, T:0.23
Consensus pattern (140 bp):
TGTGCAGTGTAAGACCATGTCTGGGACATGGCATCGACATCGATACGAGAGCTAGTGTAAGACCA
TGTCTGGGACATGGCATCAGCCTCGAAATGTAAGCCAGTGTAAGACATGTCTGGGACATGCATCA
ACTAGAGACA
Found at i:9923721 original size:17 final size:19
Alignment explanation
Indices: 9923679--9923722 Score: 51
Period size: 17 Copynumber: 2.5 Consensus size: 19
9923669 TATCATTTAC
9923679 CATTTATC-GAGCATTATT
1 CATTTATCGGAGCATTATT
*
9923697 -ATTGATCGGA-CATT-TT
1 CATTTATCGGAGCATTATT
9923713 CATTTATCGG
1 CATTTATCGG
9923723 GCTATAACAA
Statistics
Matches: 22, Mismatches: 2, Indels: 5
0.76 0.07 0.17
Matches are distributed among these distances:
16 2 0.09
17 18 0.82
18 2 0.09
ACGTcount: A:0.25, C:0.16, G:0.16, T:0.43
Consensus pattern (19 bp):
CATTTATCGGAGCATTATT
Found at i:9924583 original size:25 final size:25
Alignment explanation
Indices: 9924549--9924601 Score: 106
Period size: 25 Copynumber: 2.1 Consensus size: 25
9924539 AATTTTCCAT
9924549 TAATGAATCATCCAAAAATATCTAC
1 TAATGAATCATCCAAAAATATCTAC
9924574 TAATGAATCATCCAAAAATATCTAC
1 TAATGAATCATCCAAAAATATCTAC
9924599 TAA
1 TAA
9924602 CTTTTTATTA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 28 1.00
ACGTcount: A:0.49, C:0.19, G:0.04, T:0.28
Consensus pattern (25 bp):
TAATGAATCATCCAAAAATATCTAC
Found at i:9933187 original size:42 final size:43
Alignment explanation
Indices: 9933077--9933236 Score: 132
Period size: 43 Copynumber: 3.7 Consensus size: 43
9933067 AAGCTCTACA
* * * *
9933077 ATGCCAATGTCCTAGACGTGGTCTTACATGTAATCAAATATCG
1 ATGCCAACGTCCCAGAAGTGGTCTTACATGAAATCAAATATCG
* * *
9933120 ATGCC-ACTGTCCCAAACAG-GATCTTACGTGAAATCAAATAT-G
1 ATGCCAAC-GTCCCAGA-AGTGGTCTTACATGAAATCAAATATCG
* *
9933162 ATGCCAACGTCCCAGATGTGGTCTTACACAT-AAATCATAA-GTCG
1 ATGCCAACGTCCCAGAAGTGGTCTT--ACATGAAATCA-AATATCG
* * *
9933206 ATGCCAACATCTCAGACGTGGTCTTACATGA
1 ATGCCAACGTCCCAGAAGTGGTCTTACATGA
9933237 TAACACATAT
Statistics
Matches: 93, Mismatches: 15, Indels: 18
0.74 0.12 0.14
Matches are distributed among these distances:
41 1 0.01
42 23 0.25
43 40 0.43
44 29 0.31
ACGTcount: A:0.32, C:0.24, G:0.18, T:0.26
Consensus pattern (43 bp):
ATGCCAACGTCCCAGAAGTGGTCTTACATGAAATCAAATATCG
Found at i:9936466 original size:27 final size:27
Alignment explanation
Indices: 9936436--9936613 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
9936426 ATATTGAGTC
* * * *
9936436 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
9936463 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
9936490 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
9936518 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
9936545 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
9936572 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
9936599 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
9936614 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:9936575 original size:82 final size:81
Alignment explanation
Indices: 9936457--9936612 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
9936447 TGCTATATAA
* *
9936457 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
9936522 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
9936539 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
9936603 CACTTAGTGC
65 CACTTAGTGC
9936613 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:9949107 original size:27 final size:27
Alignment explanation
Indices: 9949074--9949553 Score: 852
Period size: 27 Copynumber: 17.6 Consensus size: 27
9949064 TAAATTGTGC
*
9949074 AGCACTAAGTGTGCGAATTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
9949101 AGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
9949128 AGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
9949155 AGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
9949182 AGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
9949209 AGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
*
9949236 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAG-TTGACTATGT
9949264 AGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
9949291 AGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
9949318 AGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAG-TTGACTATGT
9949346 AGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAG-TTGACTATGT
9949374 AGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAG-TTGACTATGT
9949402 AGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAG-TTGACTATGT
9949430 AGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
9949457 AGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
*
9949484 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAG-TTGACTATGT
* *
9949512 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGTTGACTATGT
*
9949539 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
9949554 GACTTAATAT
Statistics
Matches: 444, Mismatches: 6, Indels: 6
0.97 0.01 0.01
Matches are distributed among these distances:
27 281 0.63
28 163 0.37
ACGTcount: A:0.26, C:0.14, G:0.29, T:0.31
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGTTGACTATGT
Found at i:9949314 original size:82 final size:82
Alignment explanation
Indices: 9949074--9949553 Score: 874
Period size: 82 Copynumber: 5.9 Consensus size: 82
9949064 TAAATTGTGC
*
9949074 AGCACTAAGTGTGCGA-ATTGACTATGTAGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGT
1 AGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGT
9949138 GTGCGAGTTGACTATGT
66 GTGCGAGTTGACTATGT
9949155 AGCACTAAGTGTGCGAG-TTGACTATGTAGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGT
1 AGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGT
9949219 GTGCGAGTTGACTATGT
66 GTGCGAGTTGACTATGT
*
9949236 AGCACTAAGTGTGCGAGTTTGATTATGTAGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGT
1 AGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGT
9949301 GTGCGAGTTGACTATGT
66 GTGCGAGTTGACTATGT
9949318 AGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAG
1 AGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGAG-TTGACTATGTAGCACTAAG
9949383 TGTGCGAGTTTGACTATGT
65 TGTGCGAG-TTGACTATGT
9949402 AGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGT
1 AGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGT
9949467 GTGCGAGTTGACTATGT
66 GTGCGAGTTGACTATGT
* * * *
9949484 AGCACTAAGTGTGCGAGTTTGATTATGTAGCACTAAGTGTGCGAGTTGATTATATAGCACTGAGT
1 AGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGT
9949549 GTGCG
66 GTGCG
9949554 GACTTAATAT
Statistics
Matches: 389, Mismatches: 6, Indels: 7
0.97 0.01 0.02
Matches are distributed among these distances:
81 97 0.25
82 183 0.47
83 54 0.14
84 55 0.14
ACGTcount: A:0.26, C:0.14, G:0.29, T:0.31
Consensus pattern (82 bp):
AGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGT
GTGCGAGTTGACTATGT
Found at i:9951737 original size:42 final size:42
Alignment explanation
Indices: 9951690--9951793 Score: 172
Period size: 42 Copynumber: 2.5 Consensus size: 42
9951680 TATCGGGATG
* * *
9951690 TGAGATTCATGTAAGACCATGACTGGGACATTTGCATCGATA
1 TGAGATTCGTGTAAGACCATGACTAGGACATTGGCATCGATA
*
9951732 TGAGATTCGTGTAAGACCATGTCTAGGACATTGGCATCGATA
1 TGAGATTCGTGTAAGACCATGACTAGGACATTGGCATCGATA
9951774 TGAGATTCGTGTAAGACCAT
1 TGAGATTCGTGTAAGACCAT
9951794 AGCTAAGCTA
Statistics
Matches: 58, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
42 58 1.00
ACGTcount: A:0.30, C:0.16, G:0.25, T:0.29
Consensus pattern (42 bp):
TGAGATTCGTGTAAGACCATGACTAGGACATTGGCATCGATA
Found at i:9951807 original size:42 final size:42
Alignment explanation
Indices: 9951690--9951815 Score: 159
Period size: 42 Copynumber: 3.0 Consensus size: 42
9951680 TATCGGGATG
* * ** *
9951690 TGAGATTCATGTAAGACCATGACTGGGACATTTGCATCGATA
1 TGAGATTCGTGTAAGACCATGTCTAAGACATTGGCATCGATA
*
9951732 TGAGATTCGTGTAAGACCATGTCTAGGACATTGGCATCGATA
1 TGAGATTCGTGTAAGACCATGTCTAAGACATTGGCATCGATA
9951774 TGAGATTCGTGTAAGACCATAG-CTAAG-CTATTGG-ATCGATA
1 TGAGATTCGTGTAAGACCAT-GTCTAAGAC-ATTGGCATCGATA
9951815 T
1 T
9951816 ACTATAACAT
Statistics
Matches: 77, Mismatches: 5, Indels: 5
0.89 0.06 0.06
Matches are distributed among these distances:
41 9 0.12
42 67 0.87
43 1 0.01
ACGTcount: A:0.30, C:0.16, G:0.25, T:0.29
Consensus pattern (42 bp):
TGAGATTCGTGTAAGACCATGTCTAAGACATTGGCATCGATA
Found at i:9952728 original size:21 final size:21
Alignment explanation
Indices: 9952702--9952758 Score: 60
Period size: 24 Copynumber: 2.5 Consensus size: 21
9952692 ATGGTATAAG
9952702 GTTGATGAATTGGTACATTTT
1 GTTGATGAATTGGTACATTTT
*
9952723 GTTGATGATGAATTGGTATATTTT
1 G-T--TGATGAATTGGTACATTTT
*
9952747 GTGGCATGAATT
1 GTTG-ATGAATT
9952759 ATATGATAAT
Statistics
Matches: 30, Mismatches: 2, Indels: 7
0.77 0.05 0.18
Matches are distributed among these distances:
21 2 0.07
22 8 0.27
23 1 0.03
24 19 0.63
ACGTcount: A:0.25, C:0.04, G:0.26, T:0.46
Consensus pattern (21 bp):
GTTGATGAATTGGTACATTTT
Found at i:9959048 original size:29 final size:28
Alignment explanation
Indices: 9959012--9959089 Score: 104
Period size: 29 Copynumber: 2.7 Consensus size: 28
9959002 TCATGAGATT
9959012 GGCACTAAGTGTGCGGGTTTAAATTGTACA
1 GGCACTAAGTGTGCGGGTTTAAA--GTACA
*
9959042 -GCACTAAGTGTGCGAGTTTAAAGTACA
1 GGCACTAAGTGTGCGGGTTTAAAGTACA
9959069 TGGCACTAAGTGTGCGTGGTT
1 -GGCACTAAGTGTGCG-GGTT
9959090 GATTATTAAG
Statistics
Matches: 43, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
27 5 0.12
29 35 0.81
30 3 0.07
ACGTcount: A:0.26, C:0.14, G:0.31, T:0.29
Consensus pattern (28 bp):
GGCACTAAGTGTGCGGGTTTAAAGTACA
Found at i:9959307 original size:174 final size:174
Alignment explanation
Indices: 9959042--9959369 Score: 602
Period size: 174 Copynumber: 1.9 Consensus size: 174
9959032 AAATTGTACA
*
9959042 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGTGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
* * *
9959107 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACCTTATCGAGTCGA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACCTTACCGAGTCAA
9959172 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
131 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
*
9959216 GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
*
9959281 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACCTTACCGAGTCAA
9959346 TTTTGGACAGCGGAAAAGGTAAGT
131 TTTTGGACAGCGGAAAAGGTAAGT
9959370 ACCTTGAGTT
Statistics
Matches: 148, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
174 148 1.00
ACGTcount: A:0.30, C:0.14, G:0.24, T:0.31
Consensus pattern (174 bp):
GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACCTTACCGAGTCAA
TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
Found at i:9961330 original size:27 final size:27
Alignment explanation
Indices: 9961294--9961352 Score: 73
Period size: 27 Copynumber: 2.2 Consensus size: 27
9961284 AAGAAAATAA
* * *
9961294 AAGCCTTTGTGGAAATATATTAAATTG
1 AAGCCCTTGTGGAAATATATGAAATGG
* *
9961321 AAGCCCTTGTGGCAATTTATGAAATGG
1 AAGCCCTTGTGGAAATATATGAAATGG
9961348 AAGCC
1 AAGCC
9961353 TTCGTGGCGA
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.34, C:0.14, G:0.22, T:0.31
Consensus pattern (27 bp):
AAGCCCTTGTGGAAATATATGAAATGG
Found at i:9961359 original size:27 final size:26
Alignment explanation
Indices: 9961294--9961360 Score: 71
Period size: 27 Copynumber: 2.5 Consensus size: 26
9961284 AAGAAAATAA
* * *
9961294 AAGCCTTTGTGGAAATATATTAAATTG
1 AAGCC-TTGTGGCAATATATGAAATGG
*
9961321 AAGCCCTTGTGGCAATTTATGAAATGG
1 AAG-CCTTGTGGCAATATATGAAATGG
9961348 AAGCCTTCGTGGC
1 AAGCCTT-GTGGC
9961361 GATCTATGGA
Statistics
Matches: 34, Mismatches: 4, Indels: 4
0.81 0.10 0.10
Matches are distributed among these distances:
26 4 0.12
27 28 0.82
28 2 0.06
ACGTcount: A:0.30, C:0.15, G:0.24, T:0.31
Consensus pattern (26 bp):
AAGCCTTGTGGCAATATATGAAATGG
Found at i:9961368 original size:27 final size:28
Alignment explanation
Indices: 9961315--9961385 Score: 67
Period size: 27 Copynumber: 2.6 Consensus size: 28
9961305 GAAATATATT
* *
9961315 AAATTGAAGCCCTT-GTGGCAATTTAT-G
1 AAATGGAAG-CCTTCGTGGCAATCTATGG
*
9961342 AAATGGAAGCCTTCGTGGCGATCTATGG
1 AAATGGAAGCCTTCGTGGCAATCTATGG
*
9961370 AAA-GGAATGTCTTCGT
1 AAATGGAA-GCCTTCGT
9961386 AGTGCATTCT
Statistics
Matches: 37, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
26 4 0.11
27 22 0.59
28 11 0.30
ACGTcount: A:0.28, C:0.15, G:0.27, T:0.30
Consensus pattern (28 bp):
AAATGGAAGCCTTCGTGGCAATCTATGG
Found at i:9964543 original size:113 final size:113
Alignment explanation
Indices: 9964394--9964626 Score: 274
Period size: 113 Copynumber: 2.1 Consensus size: 113
9964384 ATAAATGAAT
* * * * *
9964394 AATGAAATTGGACCTTATAATTAGCTTTCTAAAACAAAGTGTAACATAAATAAAAATGAAATCGA
1 AATGAAATTGGACCTTATAACTAGCTCTCCAAAACAAAATGCAACATAAATAAAAATGAAATCGA
* * * * *
9964459 ACCTCATAACCAAG-CTACTTAAATAGAATGCAATATAAATGAAAATGA
66 ACATCACAACCAAGCCT-CTAAAACAGAATGCAACATAAATGAAAATGA
*
9964507 AATGAAATTGGACCTTA-ATACTAGGC-CTCCAAAACAAAATGCAACATAAATGAAAATGAAATC
1 AATGAAATTGGACCTTATA-ACTA-GCTCTCCAAAACAAAATGCAACATAAATAAAAATGAAATC
** * * *
9964570 GAACATCACAATTAGGCCTCTAAAACATAATGCCACATAAATGAAAATGA
64 GAACATCACAACCAAGCCTCTAAAACAGAATGCAACATAAATGAAAATGA
9964620 AATGAAA
1 AATGAAA
9964627 CTAGACTGTA
Statistics
Matches: 101, Mismatches: 16, Indels: 6
0.82 0.13 0.05
Matches are distributed among these distances:
112 1 0.01
113 96 0.95
114 4 0.04
ACGTcount: A:0.50, C:0.15, G:0.12, T:0.23
Consensus pattern (113 bp):
AATGAAATTGGACCTTATAACTAGCTCTCCAAAACAAAATGCAACATAAATAAAAATGAAATCGA
ACATCACAACCAAGCCTCTAAAACAGAATGCAACATAAATGAAAATGA
Found at i:9966532 original size:56 final size:56
Alignment explanation
Indices: 9966465--9966696 Score: 446
Period size: 56 Copynumber: 4.1 Consensus size: 56
9966455 TATTAGTTTA
* *
9966465 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTGATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
9966521 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
9966577 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
9966633 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
9966689 TTGCCCAT
1 TTGCCCAT
9966697 CATCCCTTGT
Statistics
Matches: 174, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
56 174 1.00
ACGTcount: A:0.23, C:0.22, G:0.09, T:0.46
Consensus pattern (56 bp):
TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
Found at i:9978891 original size:20 final size:21
Alignment explanation
Indices: 9978866--9978905 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
9978856 CTCTTGAAAT
9978866 AGGGC-ACATGCCCGTGTGGA
1 AGGGCAACATGCCCGTGTGGA
9978886 AGGGCAACATGCCCGTGTGG
1 AGGGCAACATGCCCGTGTGG
9978906 TCATTATAAC
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 5 0.26
21 14 0.74
ACGTcount: A:0.20, C:0.25, G:0.40, T:0.15
Consensus pattern (21 bp):
AGGGCAACATGCCCGTGTGGA
Found at i:9982366 original size:27 final size:27
Alignment explanation
Indices: 9982335--9982390 Score: 103
Period size: 27 Copynumber: 2.1 Consensus size: 27
9982325 CTTTGTTACC
9982335 CAAGTCATGCCGAACCTACACCAAGTT
1 CAAGTCATGCCGAACCTACACCAAGTT
*
9982362 CAAGTCATGCCGAACCTACACCATGTT
1 CAAGTCATGCCGAACCTACACCAAGTT
9982389 CA
1 CA
9982391 TATTAGCCCA
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.32, C:0.34, G:0.14, T:0.20
Consensus pattern (27 bp):
CAAGTCATGCCGAACCTACACCAAGTT
Found at i:9983376 original size:10 final size:10
Alignment explanation
Indices: 9983361--9983386 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
9983351 TGATCATGAG
9983361 ATTATGGTAA
1 ATTATGGTAA
9983371 ATTATGGTAA
1 ATTATGGTAA
9983381 ATTATG
1 ATTATG
9983387 TTATCTTATG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.38, C:0.00, G:0.19, T:0.42
Consensus pattern (10 bp):
ATTATGGTAA
Found at i:9995951 original size:57 final size:56
Alignment explanation
Indices: 9995830--9995971 Score: 146
Period size: 57 Copynumber: 2.5 Consensus size: 56
9995820 TATTGTTTAA
*
9995830 CAAGATTACCAGTCCAGGCTAAATCCTTTATATAACGTATACTCAGGGAAGCTCAAT
1 CAAGATTACCAGTCCAGGCTAAATCCTTAATATAACGTATACTCAGGGAA-CTCAAT
* * * * * *
9995887 TAGGATTATCAGTCCAGGCTAAA-CCTTAATCATAACGTATGCTCAGAGGTA-TTATAT
1 CAAGATTACCAGTCCAGGCTAAATCCTTAAT-ATAACGTATACTCAG-GGAACTCA-AT
*
9995944 CAAGATTACCCA-TCCGGGCTAAATCCTT
1 CAAGATTA-CCAGTCCAGGCTAAATCCTT
9995972 TTTATAACAA
Statistics
Matches: 69, Mismatches: 11, Indels: 9
0.78 0.12 0.10
Matches are distributed among these distances:
56 8 0.12
57 52 0.75
58 9 0.13
ACGTcount: A:0.33, C:0.23, G:0.16, T:0.28
Consensus pattern (56 bp):
CAAGATTACCAGTCCAGGCTAAATCCTTAATATAACGTATACTCAGGGAACTCAAT
Found at i:10000904 original size:28 final size:28
Alignment explanation
Indices: 10000873--10000944 Score: 90
Period size: 28 Copynumber: 2.6 Consensus size: 28
10000863 TCGATATTTT
* *
10000873 GCACACTATGTGTCATTCTCAATATCTC
1 GCACACTAAGTGCCATTCTCAATATCTC
*
10000901 GCACACTAAGTGCCATTCTCAATATTTC
1 GCACACTAAGTGCCATTCTCAATATCTC
* * *
10000929 GTACACTGAGTACCAT
1 GCACACTAAGTGCCAT
10000945 ATTTGATTGC
Statistics
Matches: 38, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
28 38 1.00
ACGTcount: A:0.28, C:0.28, G:0.12, T:0.32
Consensus pattern (28 bp):
GCACACTAAGTGCCATTCTCAATATCTC
Found at i:10012460 original size:40 final size:40
Alignment explanation
Indices: 10012416--10012603 Score: 317
Period size: 40 Copynumber: 4.7 Consensus size: 40
10012406 GCTACTTGCT
10012416 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
10012456 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
*
10012496 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* * *
10012536 CAAATGCCTTCGGG-CTTAGCCCGG-AATTAGTCACTAGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTA-TAGTAACTCGCA
10012575 CAAATGCCTTCGGGACTTAGCCCGGTTAT
1 CAAATGCCTTCGGGACTTAGCCCGGTTAT
10012604 CATCCGAATA
Statistics
Matches: 140, Mismatches: 5, Indels: 6
0.93 0.03 0.04
Matches are distributed among these distances:
38 1 0.01
39 34 0.24
40 104 0.74
41 1 0.01
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
Found at i:10012594 original size:119 final size:119
Alignment explanation
Indices: 10012383--10012603 Score: 331
Period size: 119 Copynumber: 1.9 Consensus size: 119
10012373 AAACCAAGTA
* * * *
10012383 CCTTCGGAATTTAGCCGGATATAGCTACTTGCTCAAATGCCTTCGGGACTTAGCCCGGTTATAGT
1 CCTTCGGAACTTAGCCGGATATAGCTACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGT
*
10012448 AACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
66 AACTAGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
*
10012502 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATGCCTTCGGG-CTTAGCCCGGA-ATT
1 CCTTCGGAACTTAG-CCGGATATAGCT-ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATA-T
*
10012564 AGTCACTAGCACAAATGCCTTCGGGACTTAGCCCGGTTAT
63 AGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGTTAT
10012604 CATCCGAATA
Statistics
Matches: 92, Mismatches: 7, Indels: 6
0.88 0.07 0.06
Matches are distributed among these distances:
118 1 0.01
119 62 0.67
120 29 0.32
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (119 bp):
CCTTCGGAACTTAGCCGGATATAGCTACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGT
AACTAGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
Found at i:10012774 original size:16 final size:16
Alignment explanation
Indices: 10012753--10012794 Score: 75
Period size: 16 Copynumber: 2.6 Consensus size: 16
10012743 TTACTTAAAA
10012753 CATGATCTAATCGAAT
1 CATGATCTAATCGAAT
10012769 CATGATCTAATCGAAT
1 CATGATCTAATCGAAT
*
10012785 CATAATCTAA
1 CATGATCTAA
10012795 GATCCATTAC
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
16 25 1.00
ACGTcount: A:0.40, C:0.19, G:0.10, T:0.31
Consensus pattern (16 bp):
CATGATCTAATCGAAT
Found at i:10016752 original size:48 final size:48
Alignment explanation
Indices: 10016430--10016804 Score: 319
Period size: 47 Copynumber: 7.9 Consensus size: 48
10016420 CATAGGGTAT
* * *
10016430 AATGCCGATGCCATGTCCCAAACATGGTCTTACAGT-G-GCTCATCCATC
1 AATGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCAT-C-TC
* *
10016478 AA-GTCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCACTTATC
1 AATGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCA--TCTC
** * * * *
10016527 CGTGCCGATGCCATGTCCTAGACATGGTCTTACACT-GACAC-CTTAT-
1 AATGCCGATGCCATGTCCCAGACATGGTCTTACACTAG-CTCTCATCTC
* * * * *
10016573 ACGTACCGATACCATGTCCCAGACATGGTCTTACACT-G-ACACATCTC
1 A-ATGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATCTC
* * *
10016620 -GTAGCTGATG-CATGTCCCAGACAT-GTCTTACACTAGCT-TGCATATC
1 AAT-GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCT-CATCTC
* * * * *
10016666 GAGGCCGATG-CATGTCCCAGACAT-GTCTTACTCGAGCTCTCGTCTC
1 AATGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATCTC
* * *
10016712 AATGCCGATGCCATGTACCAGACATGGTCTTACACAAGCTCTCGTCTC
1 AATGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATCTC
* *
10016760 AATGCCGATGCCATGTCCTAGACATGGTCTTACACTGGCTCTCAT
1 AATGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCAT
10016805 AATGTGGCCG
Statistics
Matches: 270, Mismatches: 40, Indels: 34
0.78 0.12 0.10
Matches are distributed among these distances:
44 10 0.04
45 19 0.07
46 56 0.21
47 80 0.30
48 63 0.23
49 8 0.03
50 33 0.12
51 1 0.00
ACGTcount: A:0.23, C:0.31, G:0.19, T:0.27
Consensus pattern (48 bp):
AATGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATCTC
Found at i:10016815 original size:48 final size:46
Alignment explanation
Indices: 10016428--10016844 Score: 281
Period size: 47 Copynumber: 8.9 Consensus size: 46
10016418 AACATAGGGT
* *
10016428 ATAA-TGCCGATGCCATGTCCCAAACATGGTCTTACAGTGGCTCATCC
1 ATAAGTGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTC-T-C
*
10016475 ATCAAGT--CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTC
1 AT-AAGTGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTC
* * * * *
10016520 ACTTATCCGTGCCGATGCCATGTCCTAGACATGGTCTTACACTGACACCTT
1 A--TA--AGTGCCGATGCCATGTCCCAGACATGGTCTTACACTGGC-TCTC
* * * * *
10016571 ATACGTACCGATACCATGTCCCAGACATGGTCTTACACTGACACATC
1 ATAAGTGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTC-TC
* * *
10016618 -T-CGTAGCTGATG-CATGTCCCAGACAT-GTCTTACACTAGCT-TGC
1 ATAAGT-GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCT-C
*
10016661 ATATCGAG-GCCGATG-CATGTCCCAGACAT-GTCTTACTC-GAGCTCTC
1 ATA---AGTGCCGATGCCATGTCCCAGACATGGTCTTACACTG-GCTCTC
* * **
10016707 GTCTCAA-TGCCGATGCCATGTACCAGACATGGTCTTACACAAGCTCTC
1 --AT-AAGTGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTC
* *
10016755 GTCTCAA-TGCCGATGCCATGTCCTAGACATGGTCTTACACTGGCTCTC
1 --AT-AAGTGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTC
* * *
10016803 ATAATGTGGCCGATG-CAGGTCCTAGACAT-GTTTTACACTGGC
1 ATAA-GT-GCCGATGCCATGTCCCAGACATGGTCTTACACTGGC
10016845 ACACAATTAA
Statistics
Matches: 306, Mismatches: 35, Indels: 59
0.76 0.09 0.15
Matches are distributed among these distances:
42 1 0.00
43 1 0.00
44 12 0.04
45 21 0.07
46 61 0.20
47 101 0.33
48 71 0.23
49 4 0.01
50 31 0.10
51 3 0.01
ACGTcount: A:0.24, C:0.30, G:0.20, T:0.27
Consensus pattern (46 bp):
ATAAGTGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTC
Found at i:10017973 original size:10 final size:11
Alignment explanation
Indices: 10017958--10017986 Score: 51
Period size: 10 Copynumber: 2.7 Consensus size: 11
10017948 GCTATAACAC
10017958 ATAAAATAAT-
1 ATAAAATAATA
10017968 ATAAAATAATA
1 ATAAAATAATA
10017979 ATAAAATA
1 ATAAAATA
10017987 GTTTCTCTAA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
10 10 0.56
11 8 0.44
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (11 bp):
ATAAAATAATA
Found at i:10021106 original size:43 final size:42
Alignment explanation
Indices: 10021051--10021217 Score: 151
Period size: 43 Copynumber: 3.9 Consensus size: 42
10021041 AACATATACA
* *
10021051 ATGCCAACGTCCCAGACGTGGTCTTACATGTAATCAAACATTG
1 ATGCCAACGTCCCAGACGTGGTCTTACACGAAATCAAA-ATTG
* * * *
10021094 ATGCC-ACTGTCCCAAACAG-GGTCTTTCACGAAATC-AGATACG
1 ATGCCAAC-GTCCCAGAC-GTGGTCTTACACGAAATCAAAAT-TG
* * * * * *
10021136 ATGTCAATGTCCCAGACATGGTCCTACACGTAAAACAGAAGTTG
1 ATGCCAACGTCCCAGACGTGGTCTTACACG-AAATCA-AAATTG
10021180 ATGCCAACGTCCCAGACGTGGTCTTACACGAAATCAAA
1 ATGCCAACGTCCCAGACGTGGTCTTACACGAAATCAAA
10021218 TACGAAATCC
Statistics
Matches: 95, Mismatches: 21, Indels: 17
0.71 0.16 0.13
Matches are distributed among these distances:
41 2 0.02
42 27 0.28
43 36 0.38
44 28 0.29
45 2 0.02
ACGTcount: A:0.32, C:0.26, G:0.19, T:0.22
Consensus pattern (42 bp):
ATGCCAACGTCCCAGACGTGGTCTTACACGAAATCAAAATTG
Found at i:10027284 original size:21 final size:21
Alignment explanation
Indices: 10027258--10027312 Score: 101
Period size: 21 Copynumber: 2.6 Consensus size: 21
10027248 CAGTTATACT
10027258 AGTATCACAATACGAGCTACG
1 AGTATCACAATACGAGCTACG
10027279 AGTATCACAATACGAGCTACG
1 AGTATCACAATACGAGCTACG
*
10027300 AGTATCGCAATAC
1 AGTATCACAATAC
10027313 CCAACTCCCA
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
21 33 1.00
ACGTcount: A:0.38, C:0.24, G:0.18, T:0.20
Consensus pattern (21 bp):
AGTATCACAATACGAGCTACG
Found at i:10036325 original size:47 final size:47
Alignment explanation
Indices: 10036256--10036491 Score: 373
Period size: 47 Copynumber: 5.0 Consensus size: 47
10036246 NNNNNNNNNN
*
10036256 TGTTCACTTTCATCACATTGGCCATTCGGCCTTATCACACATATACG
1 TGTTCACTTTCATCACATTGGCCATTCGGCCTTATCACACATATACA
* * *
10036303 TGTTCACTTTCATCACATTGGCCATTCGGCCTTATCTCATATATGCA
1 TGTTCACTTTCATCACATTGGCCATTCGGCCTTATCACACATATACA
* * * *
10036350 TGTTCACATTCATCACATTGGCCATTCGGCCTTATCTCATATATGCA
1 TGTTCACTTTCATCACATTGGCCATTCGGCCTTATCACACATATACA
*
10036397 TGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATATACA
1 TGTTCACTTTCATCACATTGGCCATTCGGCCTTATCACACATATACA
*
10036444 TGTTCACTTTCATCACATTGGCCATTCGGCCCTATTCACACATATACA
1 TGTTCACTTTCATCACATTGGCCATTCGGCCTTA-TCACACATATACA
10036492 CTTTCACATT
Statistics
Matches: 178, Mismatches: 10, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
47 165 0.93
48 13 0.07
ACGTcount: A:0.24, C:0.29, G:0.12, T:0.35
Consensus pattern (47 bp):
TGTTCACTTTCATCACATTGGCCATTCGGCCTTATCACACATATACA
Found at i:10036540 original size:141 final size:140
Alignment explanation
Indices: 10036256--10036531 Score: 371
Period size: 141 Copynumber: 2.0 Consensus size: 140
10036246 NNNNNNNNNN
* *
10036256 TGTTCACTTTCATCACATTGGCCATTCGGCCTTATCACACATATACGTGTTCACTTTCATCACAT
1 TGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATATACATGTTCACTTTCATCACAT
* * * * * * * * *
10036321 TGGCCATTCGGCCTTATCTCATATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATC
66 TGGCCATTCGGCCCTATCACACATATACATGTTCACATTCATCACATTAGACATTC-GACATACC
*
10036386 TCATATATGCA
130 ACATATATGCA
10036397 TGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATATACATGTTCACTTTCATCACAT
1 TGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATATACATGTTCACTTTCATCACAT
*
10036462 TGGCCATTCGGCCCTATTCACACATATACACT-TTCACATTTATTCA-ATTAGAC-TTC-ACATA
66 TGGCCATTCGGCCCTA-TCACACATATACA-TGTTCACATTCA-TCACATTAGACATTCGACATA
10036523 CCACATATA
128 CCACATATA
10036532 CTATCATGTA
Statistics
Matches: 119, Mismatches: 13, Indels: 8
0.85 0.09 0.06
Matches are distributed among these distances:
139 10 0.08
141 81 0.68
142 24 0.20
143 4 0.03
ACGTcount: A:0.26, C:0.29, G:0.11, T:0.35
Consensus pattern (140 bp):
TGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATATACATGTTCACTTTCATCACAT
TGGCCATTCGGCCCTATCACACATATACATGTTCACATTCATCACATTAGACATTCGACATACCA
CATATATGCA
Found at i:10044865 original size:12 final size:12
Alignment explanation
Indices: 10044850--10044887 Score: 58
Period size: 12 Copynumber: 3.2 Consensus size: 12
10044840 CTTTGATCCA
10044850 CTCCTCAAATCT
1 CTCCTCAAATCT
*
10044862 CTCCCCAAATCT
1 CTCCTCAAATCT
*
10044874 CTCCTCTAATCT
1 CTCCTCAAATCT
10044886 CT
1 CT
10044888 TCATCAGCCA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.21, C:0.45, G:0.00, T:0.34
Consensus pattern (12 bp):
CTCCTCAAATCT
Found at i:10055326 original size:47 final size:47
Alignment explanation
Indices: 10055209--10055341 Score: 180
Period size: 46 Copynumber: 2.9 Consensus size: 47
10055199 ATAATCTCAC
* * *
10055209 CCATAATGAACTTGGAACGCAACTCAACGAGCTCGGGTG-TTCGCAT
1 CCATAATGAACTCGGAACGCAACTCAACGAGTTCGGATGCTTCGCAT
* * *
10055255 CCATAATGAACTCGGAACACAACTCAACAAGTTTGGATGCTT-GCAT
1 CCATAATGAACTCGGAACGCAACTCAACGAGTTCGGATGCTTCGCAT
*
10055301 CCATAGGTGAACTCGGAACGCAACTCAACGAGTTCGGATGC
1 CCATA-ATGAACTCGGAACGCAACTCAACGAGTTCGGATGC
10055342 CTCATAATTC
Statistics
Matches: 75, Mismatches: 10, Indels: 3
0.85 0.11 0.03
Matches are distributed among these distances:
46 42 0.56
47 33 0.44
ACGTcount: A:0.31, C:0.26, G:0.23, T:0.21
Consensus pattern (47 bp):
CCATAATGAACTCGGAACGCAACTCAACGAGTTCGGATGCTTCGCAT
Found at i:10062668 original size:42 final size:42
Alignment explanation
Indices: 10062621--10062709 Score: 115
Period size: 42 Copynumber: 2.1 Consensus size: 42
10062611 TCCTAATTGG
* * *
10062621 GAAAATAATTCCCTTATTCTAATAAACTACTAAAACATAAAA
1 GAAAATAATTCCCTAACTATAATAAACTACTAAAACATAAAA
* * *
10062663 GAAAATAGTTTCCTAACTATAATAAACTACTAAAAGATAAAA
1 GAAAATAATTCCCTAACTATAATAAACTACTAAAACATAAAA
*
10062705 TAAAA
1 GAAAA
10062710 ATATTCCTAA
Statistics
Matches: 40, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
42 40 1.00
ACGTcount: A:0.55, C:0.13, G:0.04, T:0.27
Consensus pattern (42 bp):
GAAAATAATTCCCTAACTATAATAAACTACTAAAACATAAAA
Found at i:10062730 original size:43 final size:41
Alignment explanation
Indices: 10062640--10062731 Score: 114
Period size: 42 Copynumber: 2.2 Consensus size: 41
10062630 TCCCTTATTC
* *
10062640 TAATAAACTACTAAAACATAAAAGAAAATAGTTTCCTAACTA
1 TAATAAACTACTAAAACATAAAAAAAAATAG-TTCCTAAATA
*
10062682 TAATAAACTACTAAAAGATAAAATAAAAATA-TTCCTAAAATA
1 TAATAAACTACTAAAACATAAAA-AAAAATAGTTCCT-AAATA
10062724 TGAATAAA
1 T-AATAAA
10062732 ACTTATCTAC
Statistics
Matches: 44, Mismatches: 3, Indels: 5
0.85 0.06 0.10
Matches are distributed among these distances:
41 5 0.11
42 27 0.61
43 12 0.27
ACGTcount: A:0.59, C:0.11, G:0.04, T:0.26
Consensus pattern (41 bp):
TAATAAACTACTAAAACATAAAAAAAAATAGTTCCTAAATA
Found at i:10062756 original size:19 final size:18
Alignment explanation
Indices: 10062734--10062773 Score: 62
Period size: 19 Copynumber: 2.2 Consensus size: 18
10062724 TGAATAAAAC
10062734 TTATCTACCTAAATAATAT
1 TTATCTACCTAAATAA-AT
*
10062753 TTATCTACTTAAATAAAT
1 TTATCTACCTAAATAAAT
10062771 TTA
1 TTA
10062774 AAATATATAC
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
18 5 0.25
19 15 0.75
ACGTcount: A:0.42, C:0.12, G:0.00, T:0.45
Consensus pattern (18 bp):
TTATCTACCTAAATAAAT
Found at i:10067136 original size:42 final size:42
Alignment explanation
Indices: 10067089--10067177 Score: 124
Period size: 42 Copynumber: 2.1 Consensus size: 42
10067079 TCCTAATTGG
* * * *
10067089 GAAAATAGTTCCCTTATTCTAATAAACTATTAAAATATAAAA
1 GAAAATAGTTCCCTAACTCTAATAAACTACTAAAAGATAAAA
*
10067131 GAAAATAGTTTCCTAACTCTAATAAACTACTAAAAGATAAAA
1 GAAAATAGTTCCCTAACTCTAATAAACTACTAAAAGATAAAA
*
10067173 TAAAA
1 GAAAA
10067178 ATATTCCGAA
Statistics
Matches: 41, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
42 41 1.00
ACGTcount: A:0.53, C:0.12, G:0.06, T:0.29
Consensus pattern (42 bp):
GAAAATAGTTCCCTAACTCTAATAAACTACTAAAAGATAAAA
Found at i:10067224 original size:19 final size:18
Alignment explanation
Indices: 10067202--10067241 Score: 71
Period size: 19 Copynumber: 2.2 Consensus size: 18
10067192 TGAATAAAAC
10067202 TTATCTACCTAAATAATAT
1 TTATCTACCTAAATAA-AT
10067221 TTATCTACCTAAATAAAT
1 TTATCTACCTAAATAAAT
10067239 TTA
1 TTA
10067242 AAATATATAC
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
18 5 0.24
19 16 0.76
ACGTcount: A:0.42, C:0.15, G:0.00, T:0.42
Consensus pattern (18 bp):
TTATCTACCTAAATAAAT
Found at i:10070395 original size:21 final size:23
Alignment explanation
Indices: 10070371--10070416 Score: 69
Period size: 23 Copynumber: 2.1 Consensus size: 23
10070361 TAATGATAAA
*
10070371 TATTTTAAT-GTA-AAATATTAT
1 TATTTTAATAGTATAAACATTAT
10070392 TATTTTAATAGTATAAACATTAT
1 TATTTTAATAGTATAAACATTAT
10070415 TA
1 TA
10070417 AAAATAATAT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
21 9 0.41
22 3 0.14
23 10 0.45
ACGTcount: A:0.43, C:0.02, G:0.04, T:0.50
Consensus pattern (23 bp):
TATTTTAATAGTATAAACATTAT
Found at i:10072463 original size:16 final size:16
Alignment explanation
Indices: 10072442--10072478 Score: 58
Period size: 16 Copynumber: 2.3 Consensus size: 16
10072432 TAAGGAAAAA
10072442 ATAGTGTTG-AAGCAAC
1 ATAGTGTTGCAAGC-AC
10072458 ATAGTGTTGCAAGCAC
1 ATAGTGTTGCAAGCAC
10072474 ATAGT
1 ATAGT
10072479 TAAGCAACCT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
16 16 0.80
17 4 0.20
ACGTcount: A:0.35, C:0.14, G:0.24, T:0.27
Consensus pattern (16 bp):
ATAGTGTTGCAAGCAC
Found at i:10073591 original size:13 final size:13
Alignment explanation
Indices: 10073547--10073604 Score: 55
Period size: 13 Copynumber: 4.5 Consensus size: 13
10073537 ATTGAAGTTA
*
10073547 AAAAGTGCTTTTG
1 AAAAGTACTTTTG
* *
10073560 AAAAATA-TTGTGG
1 AAAAGTACTT-TTG
10073573 AAAAGTACTTTTG
1 AAAAGTACTTTTG
* *
10073586 ATAAGTGCTTTTG
1 AAAAGTACTTTTG
10073599 AAAAGT
1 AAAAGT
10073605 TTGACAATGT
Statistics
Matches: 35, Mismatches: 8, Indels: 4
0.74 0.17 0.09
Matches are distributed among these distances:
12 2 0.06
13 31 0.89
14 2 0.06
ACGTcount: A:0.38, C:0.05, G:0.21, T:0.36
Consensus pattern (13 bp):
AAAAGTACTTTTG
Found at i:10077034 original size:38 final size:38
Alignment explanation
Indices: 10076983--10077062 Score: 151
Period size: 38 Copynumber: 2.1 Consensus size: 38
10076973 TTATTCGAGA
*
10076983 AGTAAGGACCATTTTAAAAATTTTCAAAATCTAACTTG
1 AGTAAGGACCATTTTAAAAAATTTCAAAATCTAACTTG
10077021 AGTAAGGACCATTTTAAAAAATTTCAAAATCTAACTTG
1 AGTAAGGACCATTTTAAAAAATTTCAAAATCTAACTTG
10077059 AGTA
1 AGTA
10077063 TCAATATTTT
Statistics
Matches: 41, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
38 41 1.00
ACGTcount: A:0.44, C:0.12, G:0.11, T:0.33
Consensus pattern (38 bp):
AGTAAGGACCATTTTAAAAAATTTCAAAATCTAACTTG
Found at i:10077211 original size:14 final size:14
Alignment explanation
Indices: 10077181--10077217 Score: 51
Period size: 14 Copynumber: 2.7 Consensus size: 14
10077171 TATTTTCCGA
10077181 AAAATGATTTCTGG
1 AAAATGATTTCTGG
10077195 AAAATGATTTACT-G
1 AAAATGATTT-CTGG
10077209 AAAAT-ATTT
1 AAAATGATTT
10077218 TATGATGTTT
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
13 4 0.18
14 16 0.73
15 2 0.09
ACGTcount: A:0.43, C:0.05, G:0.14, T:0.38
Consensus pattern (14 bp):
AAAATGATTTCTGG
Found at i:10077334 original size:20 final size:20
Alignment explanation
Indices: 10077305--10077343 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
10077295 GTTTTTACAT
10077305 ATATTAATAAATTTATATAC
1 ATATTAATAAATTTATATAC
* *
10077325 ATATTCATAAATTTCTATA
1 ATATTAATAAATTTATATA
10077344 TTCTAAATTT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.46, C:0.08, G:0.00, T:0.46
Consensus pattern (20 bp):
ATATTAATAAATTTATATAC
Found at i:10081280 original size:16 final size:16
Alignment explanation
Indices: 10081220--10081348 Score: 78
Period size: 16 Copynumber: 7.9 Consensus size: 16
10081210 TGCATATTTT
*
10081220 CACAGCTCGTACATTA
1 CACAGCTCGCACATTA
* *
10081236 CTACAGCTCACACAATA
1 C-ACAGCTCGCACATTA
* *
10081253 CATAGCTTGCACATTA
1 CACAGCTCGCACATTA
* *
10081269 CACAACTCGCACATCA
1 CACAGCTCGCACATTA
*** *
10081285 TTGTAGCTCACACATTA
1 -CACAGCTCGCACATTA
* *
10081302 CACAGCTCACACATCA
1 CACAGCTCGCACATTA
* * *
10081318 CTATAACTCGCAAATTA
1 C-ACAGCTCGCACATTA
*
10081335 CACAGCTCACACAT
1 CACAGCTCGCACAT
10081349 CATTATGACT
Statistics
Matches: 80, Mismatches: 30, Indels: 6
0.69 0.26 0.05
Matches are distributed among these distances:
16 46 0.57
17 34 0.43
ACGTcount: A:0.36, C:0.33, G:0.09, T:0.22
Consensus pattern (16 bp):
CACAGCTCGCACATTA
Found at i:10081292 original size:33 final size:33
Alignment explanation
Indices: 10081223--10081366 Score: 150
Period size: 33 Copynumber: 4.4 Consensus size: 33
10081213 ATATTTTCAC
* *
10081223 AGCTCGTACATTACTACAGCTCACACA--ATACAT
1 AGCTCGCACATTAC-ACAGCTCACACATCAT-TAT
* * * *
10081256 AGCTTGCACATTACACAACTCGCACATCATTGT
1 AGCTCGCACATTACACAGCTCACACATCATTAT
* *
10081289 AGCTCACACATTACACAGCTCACACATCACTAT
1 AGCTCGCACATTACACAGCTCACACATCATTAT
* *
10081322 AACTCGCAAATTACACAGCTCACACATCATTAT
1 AGCTCGCACATTACACAGCTCACACATCATTAT
10081355 -GACTCGCACATT
1 AG-CTCGCACATT
10081367 GATATATACA
Statistics
Matches: 90, Mismatches: 18, Indels: 6
0.79 0.16 0.05
Matches are distributed among these distances:
32 10 0.11
33 78 0.87
34 2 0.02
ACGTcount: A:0.35, C:0.32, G:0.09, T:0.24
Consensus pattern (33 bp):
AGCTCGCACATTACACAGCTCACACATCATTAT
Found at i:10081365 original size:66 final size:66
Alignment explanation
Indices: 10081223--10081366 Score: 168
Period size: 66 Copynumber: 2.2 Consensus size: 66
10081213 ATATTTTCAC
* * * * * *
10081223 AGCTCGTACATTACTACAGCTCACACAATACATAGCTTGCACATTACACAACTCGCACATCATTG
1 AGCTCGCACATTACTACAGCTCACACAATACATAACTCGCAAATTACACAACTCACACATCATTA
10081288 T
66 T
* *
10081289 AGCTCACACATTAC-ACAGCTCACAC-ATCACTATAACTCGCAAATTACACAGCTCACACATCAT
1 AGCTCGCACATTACTACAGCTCACACAAT-AC-ATAACTCGCAAATTACACAACTCACACATCAT
10081352 TAT
64 TAT
10081355 -GACTCGCACATT
1 AG-CTCGCACATT
10081367 GATATATACA
Statistics
Matches: 66, Mismatches: 9, Indels: 6
0.81 0.11 0.07
Matches are distributed among these distances:
64 2 0.03
65 14 0.21
66 50 0.76
ACGTcount: A:0.35, C:0.32, G:0.09, T:0.24
Consensus pattern (66 bp):
AGCTCGCACATTACTACAGCTCACACAATACATAACTCGCAAATTACACAACTCACACATCATTA
T
Found at i:10086923 original size:25 final size:25
Alignment explanation
Indices: 10086895--10086950 Score: 94
Period size: 25 Copynumber: 2.2 Consensus size: 25
10086885 TTTGAAAGAC
10086895 CTTACCATTATTCAGCTCGGAGGAG
1 CTTACCATTATTCAGCTCGGAGGAG
* *
10086920 CTTACCATTATTTAGCTTGGAGGAG
1 CTTACCATTATTCAGCTCGGAGGAG
10086945 CTTACC
1 CTTACC
10086951 GTTTATAGCT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
25 29 1.00
ACGTcount: A:0.23, C:0.23, G:0.21, T:0.32
Consensus pattern (25 bp):
CTTACCATTATTCAGCTCGGAGGAG
Found at i:10094347 original size:20 final size:22
Alignment explanation
Indices: 10094324--10094363 Score: 57
Period size: 20 Copynumber: 1.9 Consensus size: 22
10094314 ATATGCTTTG
10094324 ATTGAATTA-AAT-ATATATTA
1 ATTGAATTATAATCATATATTA
*
10094344 ATTGTATTATAATCATATAT
1 ATTGAATTATAATCATATAT
10094364 GATTACCGAT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 8 0.47
21 3 0.18
22 6 0.35
ACGTcount: A:0.45, C:0.03, G:0.05, T:0.47
Consensus pattern (22 bp):
ATTGAATTATAATCATATATTA
Found at i:10094505 original size:25 final size:25
Alignment explanation
Indices: 10094476--10094583 Score: 121
Period size: 25 Copynumber: 4.3 Consensus size: 25
10094466 TCCCTCTTAT
* *
10094476 GAGCTTACCGATACTCAGCTCGTAT
1 GAGCTTACCGATATTCAGCTCGTAG
* *
10094501 GAGCTTACC-ATTATTCATCTCGGAG
1 GAGCTTACCGA-TATTCAGCTCGTAG
*
10094526 GAGCTTACCGTTATTCAGCTCAG-AG
1 GAGCTTACCGATATTCAGCTC-GTAG
* *
10094551 GAGCTTACCGTTATTCAGCTCGAAG
1 GAGCTTACCGATATTCAGCTCGTAG
10094576 GAGCTTAC
1 GAGCTTAC
10094584 TGTTTATAGC
Statistics
Matches: 73, Mismatches: 6, Indels: 8
0.84 0.07 0.09
Matches are distributed among these distances:
24 2 0.03
25 70 0.96
26 1 0.01
ACGTcount: A:0.24, C:0.25, G:0.22, T:0.29
Consensus pattern (25 bp):
GAGCTTACCGATATTCAGCTCGTAG
Found at i:10094530 original size:50 final size:50
Alignment explanation
Indices: 10094476--10094583 Score: 146
Period size: 50 Copynumber: 2.2 Consensus size: 50
10094466 TCCCTCTTAT
* * *
10094476 GAGCTTACCGATACTCAGCTC-GTATGAGCTTACCATTATTCATCTCGGAG
1 GAGCTTACCGATACTCAGCTCAG-AGGAGCTTACCATTATTCAGCTCGAAG
* * *
10094526 GAGCTTACCGTTATTCAGCTCAGAGGAGCTTACCGTTATTCAGCTCGAAG
1 GAGCTTACCGATACTCAGCTCAGAGGAGCTTACCATTATTCAGCTCGAAG
10094576 GAGCTTAC
1 GAGCTTAC
10094584 TGTTTATAGC
Statistics
Matches: 51, Mismatches: 6, Indels: 2
0.86 0.10 0.03
Matches are distributed among these distances:
50 50 0.98
51 1 0.02
ACGTcount: A:0.24, C:0.25, G:0.22, T:0.29
Consensus pattern (50 bp):
GAGCTTACCGATACTCAGCTCAGAGGAGCTTACCATTATTCAGCTCGAAG
Found at i:10102259 original size:15 final size:17
Alignment explanation
Indices: 10102229--10102260 Score: 50
Period size: 15 Copynumber: 2.0 Consensus size: 17
10102219 TTGATACTTG
10102229 TGAATGTGAGTTTGGTA
1 TGAATGTGAGTTTGGTA
10102246 TGAAT-TGA-TTTGGTA
1 TGAATGTGAGTTTGGTA
10102261 AATTATGCTA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
15 7 0.47
16 3 0.20
17 5 0.33
ACGTcount: A:0.25, C:0.00, G:0.31, T:0.44
Consensus pattern (17 bp):
TGAATGTGAGTTTGGTA
Found at i:10103239 original size:56 final size:56
Alignment explanation
Indices: 10103153--10103282 Score: 161
Period size: 56 Copynumber: 2.3 Consensus size: 56
10103143 TAAAGAGCAT
* * * ** *
10103153 AAGTCAATATGCTTACACGGCTTAGCACACGGGCATGTGGCTTGGCTGTGTGACCC
1 AAGTCAGTATACTCACACGGCTTAGCACACGGGCATGTGGCTTGGCCATGTGACAC
* * * *
10103209 AAGTCAGTATACTCACATGGCTTAGCACACGGGCGTGTGGCTTGGCCATGTGTCAT
1 AAGTCAGTATACTCACACGGCTTAGCACACGGGCATGTGGCTTGGCCATGTGACAC
*
10103265 AAGTCAGTATACCCACAC
1 AAGTCAGTATACTCACAC
10103283 AGGCACGGAC
Statistics
Matches: 62, Mismatches: 12, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
56 62 1.00
ACGTcount: A:0.24, C:0.25, G:0.26, T:0.25
Consensus pattern (56 bp):
AAGTCAGTATACTCACACGGCTTAGCACACGGGCATGTGGCTTGGCCATGTGACAC
Found at i:10106131 original size:9 final size:9
Alignment explanation
Indices: 10106117--10106151 Score: 52
Period size: 9 Copynumber: 3.7 Consensus size: 9
10106107 ATAGATTTGC
10106117 CAAACATAA
1 CAAACATAA
10106126 CAAACATAA
1 CAAACATAA
10106135 CAAACACATAA
1 C-AA-ACATAA
10106146 CAAACA
1 CAAACA
10106152 CATTCCAAAC
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
9 13 0.54
10 4 0.17
11 7 0.29
ACGTcount: A:0.66, C:0.26, G:0.00, T:0.09
Consensus pattern (9 bp):
CAAACATAA
Found at i:10106161 original size:11 final size:11
Alignment explanation
Indices: 10106120--10106154 Score: 56
Period size: 11 Copynumber: 3.4 Consensus size: 11
10106110 GATTTGCCAA
10106120 ACATAAC-AA-
1 ACATAACAAAC
10106129 ACATAACAAAC
1 ACATAACAAAC
10106140 ACATAACAAAC
1 ACATAACAAAC
10106151 ACAT
1 ACAT
10106155 TCCAAACTCA
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
9 7 0.29
10 2 0.08
11 15 0.62
ACGTcount: A:0.63, C:0.26, G:0.00, T:0.11
Consensus pattern (11 bp):
ACATAACAAAC
Found at i:10107312 original size:24 final size:25
Alignment explanation
Indices: 10107261--10107313 Score: 106
Period size: 25 Copynumber: 2.1 Consensus size: 25
10107251 ATATATAGGA
10107261 TTTTTCCTATGCAATTTATCAACTT
1 TTTTTCCTATGCAATTTATCAACTT
10107286 TTTTTCCTATGCAATTTATCAACTT
1 TTTTTCCTATGCAATTTATCAACTT
10107311 TTT
1 TTT
10107314 ACTTAAATTC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 28 1.00
ACGTcount: A:0.23, C:0.19, G:0.04, T:0.55
Consensus pattern (25 bp):
TTTTTCCTATGCAATTTATCAACTT
Found at i:10110633 original size:32 final size:32
Alignment explanation
Indices: 10110592--10110656 Score: 121
Period size: 32 Copynumber: 2.0 Consensus size: 32
10110582 CACCTCAAAG
*
10110592 ATAATTATTCTACCAAGATAGACCACATTCGC
1 ATAATTATTCTACCAAGATAAACCACATTCGC
10110624 ATAATTATTCTACCAAGATAAACCACATTCGC
1 ATAATTATTCTACCAAGATAAACCACATTCGC
10110656 A
1 A
10110657 ACCACCTATT
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.40, C:0.25, G:0.08, T:0.28
Consensus pattern (32 bp):
ATAATTATTCTACCAAGATAAACCACATTCGC
Found at i:10111413 original size:18 final size:19
Alignment explanation
Indices: 10111376--10111421 Score: 60
Period size: 19 Copynumber: 2.5 Consensus size: 19
10111366 CTCAAAAAGT
10111376 TATAAAGAAATGAAATAATA
1 TATAAA-AAATGAAATAATA
*
10111396 TATAAAAAATTAAA-AATA
1 TATAAAAAATGAAATAATA
10111414 TA-AAAAAA
1 TATAAAAAA
10111422 AAACTCAAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
17 6 0.24
18 6 0.24
19 7 0.28
20 6 0.24
ACGTcount: A:0.72, C:0.00, G:0.04, T:0.24
Consensus pattern (19 bp):
TATAAAAAATGAAATAATA
Found at i:10117517 original size:20 final size:20
Alignment explanation
Indices: 10117494--10117531 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
10117484 GTTACACATA
10117494 TCATGAACTCAGACCACAAC
1 TCATGAACTCAGACCACAAC
* *
10117514 TCATGAGCTCAGATCACA
1 TCATGAACTCAGACCACA
10117532 TAGTTTCTAG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.37, C:0.32, G:0.13, T:0.18
Consensus pattern (20 bp):
TCATGAACTCAGACCACAAC
Found at i:10121547 original size:24 final size:24
Alignment explanation
Indices: 10121495--10121547 Score: 63
Period size: 24 Copynumber: 2.2 Consensus size: 24
10121485 GGCAAACTAG
*
10121495 AATGCAAACGGGGGTCATGAGAAA
1 AATGCAAACGGGGATCATGAGAAA
* *
10121519 AATGCAAACTGGGATCGT-AGAAA
1 AATGCAAACGGGGATCATGAGAAA
10121542 AGATGC
1 A-ATGC
10121548 GAGCTGTCTG
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
23 6 0.24
24 19 0.76
ACGTcount: A:0.42, C:0.13, G:0.30, T:0.15
Consensus pattern (24 bp):
AATGCAAACGGGGATCATGAGAAA
Found at i:10121629 original size:13 final size:14
Alignment explanation
Indices: 10121611--10121639 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
10121601 TGTGTGCAAG
10121611 TTATGTTTT-CAGA
1 TTATGTTTTCCAGA
10121624 TTATGTTTTCCAGA
1 TTATGTTTTCCAGA
10121638 TT
1 TT
10121640 TTTTAGAGAT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 9 0.60
14 6 0.40
ACGTcount: A:0.21, C:0.10, G:0.14, T:0.55
Consensus pattern (14 bp):
TTATGTTTTCCAGA
Found at i:10122032 original size:10 final size:10
Alignment explanation
Indices: 10122017--10122042 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
10122007 TAGTCCATTG
10122017 AAAACAAAGA
1 AAAACAAAGA
10122027 AAAACAAAGA
1 AAAACAAAGA
10122037 AAAACA
1 AAAACA
10122043 TAAGTACTTG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.81, C:0.12, G:0.08, T:0.00
Consensus pattern (10 bp):
AAAACAAAGA
Found at i:10125774 original size:16 final size:16
Alignment explanation
Indices: 10125753--10125787 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
10125743 AAAAAAATAA
**
10125753 CCCCAAATCGTGAAAT
1 CCCCAAATCACGAAAT
10125769 CCCCAAATCACGAAAT
1 CCCCAAATCACGAAAT
10125785 CCC
1 CCC
10125788 TAAAAACTTT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.37, C:0.40, G:0.09, T:0.14
Consensus pattern (16 bp):
CCCCAAATCACGAAAT
Found at i:10125887 original size:30 final size:30
Alignment explanation
Indices: 10125846--10125905 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
10125836 TCTACATCCT
10125846 TAATCCCTTATTCCCAAATCATGAAATCTC
1 TAATCCCTTATTCCCAAATCATGAAATCTC
* * *
10125876 TAATCCTTTATTCTCAAATCGTGAAATCTC
1 TAATCCCTTATTCCCAAATCATGAAATCTC
10125906 ATAAACTCTA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.32, C:0.27, G:0.05, T:0.37
Consensus pattern (30 bp):
TAATCCCTTATTCCCAAATCATGAAATCTC
Found at i:10127434 original size:30 final size:30
Alignment explanation
Indices: 10127393--10127461 Score: 129
Period size: 30 Copynumber: 2.3 Consensus size: 30
10127383 TAGGGCTGAC
10127393 TGTGTGTCACACACGGCCTAGGTACACGTT
1 TGTGTGTCACACACGGCCTAGGTACACGTT
*
10127423 TGTGCGTCACACACGGCCTAGGTACACGTT
1 TGTGTGTCACACACGGCCTAGGTACACGTT
10127453 TGTGTGTCA
1 TGTGTGTCA
10127462 AGCCGTGTGG
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
30 37 1.00
ACGTcount: A:0.19, C:0.26, G:0.28, T:0.28
Consensus pattern (30 bp):
TGTGTGTCACACACGGCCTAGGTACACGTT
Found at i:10128462 original size:170 final size:172
Alignment explanation
Indices: 10128178--10128511 Score: 503
Period size: 170 Copynumber: 2.0 Consensus size: 172
10128168 ACGTAAATGA
*
10128178 AGCTCGAATGTCGTAATTCTCATTTAGGTACCTGTACCACTCACCATATGGTCATAAGTTCTCTC
1 AGCTCGAATGTCGTAATTCTCATTTAGGTACCTGTACCACTCACCATATGGTCATAAGCTCTCTC
* * *
10128243 ATTTCAATATAAACCATAAATCTCTCGTTAAACCATTTGAAATACTACAGAATATTCAATAGCCC
66 ATTTCAAGACAAACCATAAATCTCCCGTTAAACCATTTGAAATACTACAGAATATTCAATAGCCC
* ** *
10128308 CAAATATGGGATAAAATGTCGATGCCATGTCCCAAACATGGT
131 CAAACATGGGATAAAATACCGACGCCATGTCCCAAACATGGT
* *
10128350 AGCTCGAATGTTGTAATTCTTATTTAGGTA-CTGTACCACTCA-CATATGGTCATAAGCTCTCTC
1 AGCTCGAATGTCGTAATTCTCATTTAGGTACCTGTACCACTCACCATATGGTCATAAGCTCTCTC
** * *
10128413 ATTTTGAGACAAACCATAAATCTCCCGTTGAACCATTT-AGAATACTACAGGATATTCAATAGCC
66 ATTTCAAGACAAACCATAAATCTCCCGTTAAACCATTTGA-AATACTACAGAATATTCAATAGCC
*
10128477 CTAAACATGGGATAAAATACCGACGCCATGTCCCA
130 CCAAACATGGGATAAAATACCGACGCCATGTCCCA
10128512 GACCTGGTCT
Statistics
Matches: 146, Mismatches: 15, Indels: 4
0.88 0.09 0.02
Matches are distributed among these distances:
169 1 0.01
170 105 0.72
171 12 0.08
172 28 0.19
ACGTcount: A:0.33, C:0.23, G:0.14, T:0.30
Consensus pattern (172 bp):
AGCTCGAATGTCGTAATTCTCATTTAGGTACCTGTACCACTCACCATATGGTCATAAGCTCTCTC
ATTTCAAGACAAACCATAAATCTCCCGTTAAACCATTTGAAATACTACAGAATATTCAATAGCCC
CAAACATGGGATAAAATACCGACGCCATGTCCCAAACATGGT
Found at i:10130492 original size:13 final size:13
Alignment explanation
Indices: 10130470--10130502 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
10130460 AAGGGTTTGT
10130470 TTAT-TAAACTAA
1 TTATCTAAACTAA
10130482 TTATCTAAACTAA
1 TTATCTAAACTAA
*
10130495 TTAACTAA
1 TTATCTAA
10130503 TTTAATTAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 4 0.21
13 15 0.79
ACGTcount: A:0.48, C:0.12, G:0.00, T:0.39
Consensus pattern (13 bp):
TTATCTAAACTAA
Found at i:10133447 original size:7 final size:6
Alignment explanation
Indices: 10133430--10133488 Score: 54
Period size: 5 Copynumber: 10.2 Consensus size: 6
10133420 TCAAATTGAC
*
10133430 ATAAAA ATAAAA ATTAAA AT-AAA AT-AAA AT-AAA AT-AAA ATAAAAA
1 ATAAAA ATAAAA ATAAAA ATAAAA ATAAAA ATAAAA ATAAAA AT-AAAA
*
10133475 ATTAAGA ATAAAA A
1 A-TAAAA ATAAAA A
10133489 GATAGGAGGA
Statistics
Matches: 47, Mismatches: 3, Indels: 6
0.84 0.05 0.11
Matches are distributed among these distances:
5 20 0.43
6 18 0.38
7 8 0.17
8 1 0.02
ACGTcount: A:0.78, C:0.00, G:0.02, T:0.20
Consensus pattern (6 bp):
ATAAAA
Found at i:10133452 original size:5 final size:5
Alignment explanation
Indices: 10133433--10133473 Score: 64
Period size: 5 Copynumber: 7.8 Consensus size: 5
10133423 AATTGACATA
10133433 AAAAT AAAAATT AAAAT AAAAT AAAAT AAAAT AAAAT AAAA
1 AAAAT -AAAA-T AAAAT AAAAT AAAAT AAAAT AAAAT AAAA
10133474 AATTAAGAAT
Statistics
Matches: 34, Mismatches: 0, Indels: 3
0.92 0.00 0.08
Matches are distributed among these distances:
5 25 0.74
6 8 0.24
7 1 0.03
ACGTcount: A:0.80, C:0.00, G:0.00, T:0.20
Consensus pattern (5 bp):
AAAAT
Found at i:10133464 original size:15 final size:16
Alignment explanation
Indices: 10133433--10133487 Score: 67
Period size: 15 Copynumber: 3.2 Consensus size: 16
10133423 AATTGACATA
10133433 AAAATAAAAATTAAAAT
1 AAAAT-AAAATTAAAAT
10133450 AAAATAAAA-TAAAAT
1 AAAATAAAATTAAAAT
10133465 AAAATAAAAAATTAAGAAT
1 AAAAT--AAAATTAA-AAT
10133484 AAAA
1 AAAA
10133488 AGATAGGAGG
Statistics
Matches: 34, Mismatches: 0, Indels: 6
0.85 0.00 0.15
Matches are distributed among these distances:
15 11 0.32
16 4 0.12
17 9 0.26
18 3 0.09
19 7 0.21
ACGTcount: A:0.78, C:0.00, G:0.02, T:0.20
Consensus pattern (16 bp):
AAAATAAAATTAAAAT
Found at i:10138661 original size:13 final size:13
Alignment explanation
Indices: 10138639--10138671 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
10138629 AAGGGTTTGC
10138639 TTAT-TAAACTAA
1 TTATCTAAACTAA
10138651 TTATCTAAACTAA
1 TTATCTAAACTAA
*
10138664 TTAACTAA
1 TTATCTAA
10138672 TTTAATTAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 4 0.21
13 15 0.79
ACGTcount: A:0.48, C:0.12, G:0.00, T:0.39
Consensus pattern (13 bp):
TTATCTAAACTAA
Found at i:10139951 original size:16 final size:16
Alignment explanation
Indices: 10139926--10139964 Score: 60
Period size: 16 Copynumber: 2.4 Consensus size: 16
10139916 GTAGATCAGC
*
10139926 AAAAGCCAAAATGCCG
1 AAAAGCCAAAATGCCA
*
10139942 AAAAGTCAAAATGCCA
1 AAAAGCCAAAATGCCA
10139958 AAAAGCC
1 AAAAGCC
10139965 GAAAGTTTGA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.54, C:0.23, G:0.15, T:0.08
Consensus pattern (16 bp):
AAAAGCCAAAATGCCA
Found at i:10140263 original size:28 final size:28
Alignment explanation
Indices: 10140181--10140270 Score: 110
Period size: 29 Copynumber: 3.1 Consensus size: 28
10140171 TGAGCATGAT
* *
10140181 TATAAATGTGAATTGGGACT-GATGAGCCA
1 TATAAATGTG-ATTGGGCCTAG-TGGGCCA
*
10140210 TATAAATGTGATTTGGGCCTACTGGGCCA
1 TATAAATGTGA-TTGGGCCTAGTGGGCCA
*
10140239 TATAAATGTGATTGGGCCTAGTGGGTCA
1 TATAAATGTGATTGGGCCTAGTGGGCCA
10140267 TATA
1 TATA
10140271 TAGGTATGTG
Statistics
Matches: 54, Mismatches: 5, Indels: 5
0.84 0.08 0.08
Matches are distributed among these distances:
28 20 0.37
29 34 0.63
ACGTcount: A:0.29, C:0.12, G:0.28, T:0.31
Consensus pattern (28 bp):
TATAAATGTGATTGGGCCTAGTGGGCCA
Found at i:10141691 original size:46 final size:45
Alignment explanation
Indices: 10141599--10141715 Score: 130
Period size: 46 Copynumber: 2.6 Consensus size: 45
10141589 AAGGCTGATG
* * *
10141599 CATGTCCCAGACATGTCTTACACTAACTCTCGTCTCAATGCTGATA
1 CATGTCCCAGACATGTCTTACACT-ACGCTCGTCACAATGCCGATA
*
10141645 CATGTCCCAGACATGTCTTACACT-GGCTC-TCACAATGTGGCCGATA
1 CATGTCCCAGACATGTCTTACACTACGCTCGTCACAA--T-GCCGATA
* *
10141691 CATGTCCCAAACATGTCTTCCACTA
1 CATGTCCCAGACATGTCTTACACTA
10141716 GCACACATAT
Statistics
Matches: 61, Mismatches: 6, Indels: 7
0.82 0.08 0.09
Matches are distributed among these distances:
43 5 0.08
44 3 0.05
45 1 0.02
46 52 0.85
ACGTcount: A:0.26, C:0.32, G:0.15, T:0.28
Consensus pattern (45 bp):
CATGTCCCAGACATGTCTTACACTACGCTCGTCACAATGCCGATA
Found at i:10156530 original size:3 final size:3
Alignment explanation
Indices: 10156522--10156559 Score: 76
Period size: 3 Copynumber: 12.7 Consensus size: 3
10156512 TGTAGACTGC
10156522 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
10156560 GTCAATTTCT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 35 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
TAT
Found at i:10159563 original size:55 final size:55
Alignment explanation
Indices: 10159502--10159611 Score: 220
Period size: 55 Copynumber: 2.0 Consensus size: 55
10159492 TGCTACATAA
10159502 AATCAGAATTTTTGTACTTCATTTCATTAGAGTTTTTTTCTATTACACTACAACC
1 AATCAGAATTTTTGTACTTCATTTCATTAGAGTTTTTTTCTATTACACTACAACC
10159557 AATCAGAATTTTTGTACTTCATTTCATTAGAGTTTTTTTCTATTACACTACAACC
1 AATCAGAATTTTTGTACTTCATTTCATTAGAGTTTTTTTCTATTACACTACAACC
10159612 TTGGTTGATA
Statistics
Matches: 55, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
55 55 1.00
ACGTcount: A:0.29, C:0.18, G:0.07, T:0.45
Consensus pattern (55 bp):
AATCAGAATTTTTGTACTTCATTTCATTAGAGTTTTTTTCTATTACACTACAACC
Found at i:10161248 original size:23 final size:23
Alignment explanation
Indices: 10161188--10161258 Score: 81
Period size: 23 Copynumber: 3.1 Consensus size: 23
10161178 AATCACTCAT
**
10161188 TTGCACC-AAAGTGCCACGGTCAA
1 TTGCACCGAAA-TGCCACTTTCAA
* * *
10161211 TTGCACTGGAGTGCCACTTTCAA
1 TTGCACCGAAATGCCACTTTCAA
10161234 TTGCACCGAAATGCCACTTTCAA
1 TTGCACCGAAATGCCACTTTCAA
10161257 TT
1 TT
10161259 TACGCGTTGA
Statistics
Matches: 39, Mismatches: 8, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
23 38 0.97
24 1 0.03
ACGTcount: A:0.27, C:0.28, G:0.18, T:0.27
Consensus pattern (23 bp):
TTGCACCGAAATGCCACTTTCAA
Found at i:10162037 original size:17 final size:17
Alignment explanation
Indices: 10162015--10162049 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
10162005 AAATATAAGA
10162015 TTAACTCACTTCAGTGT
1 TTAACTCACTTCAGTGT
10162032 TTAACTCACTTCAGTGT
1 TTAACTCACTTCAGTGT
10162049 T
1 T
10162050 CCTAATTAAC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.23, C:0.23, G:0.11, T:0.43
Consensus pattern (17 bp):
TTAACTCACTTCAGTGT
Found at i:10166434 original size:11 final size:10
Alignment explanation
Indices: 10166397--10166426 Score: 51
Period size: 10 Copynumber: 2.9 Consensus size: 10
10166387 ACTTAAGATA
10166397 ATAAAAACTAT
1 ATAAAAAC-AT
10166408 ATAAAAACAT
1 ATAAAAACAT
10166418 ATAAAAACA
1 ATAAAAACA
10166427 CTCTAAAACA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
10 11 0.58
11 8 0.42
ACGTcount: A:0.70, C:0.10, G:0.00, T:0.20
Consensus pattern (10 bp):
ATAAAAACAT
Found at i:10166593 original size:24 final size:24
Alignment explanation
Indices: 10166564--10166611 Score: 87
Period size: 24 Copynumber: 2.0 Consensus size: 24
10166554 AATCCCTACT
10166564 AGCATATATGTTCATTAATCACCA
1 AGCATATATGTTCATTAATCACCA
*
10166588 AGCATATATGTTCATTAATTACCA
1 AGCATATATGTTCATTAATCACCA
10166612 TACTCTCACT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.38, C:0.19, G:0.08, T:0.35
Consensus pattern (24 bp):
AGCATATATGTTCATTAATCACCA
Found at i:10167537 original size:11 final size:11
Alignment explanation
Indices: 10167515--10167563 Score: 53
Period size: 11 Copynumber: 4.1 Consensus size: 11
10167505 ATTTACTTTA
10167515 ATTAATTAAAAT
1 ATTAA-TAAAAT
10167527 ATTAATAAAATAT
1 ATTAAT-AAA-AT
10167540 ATTTAATAAAAT
1 A-TTAATAAAAT
*
10167552 ATTACTAAAAT
1 ATTAATAAAAT
10167563 A
1 A
10167564 ATATTAAATA
Statistics
Matches: 33, Mismatches: 1, Indels: 7
0.80 0.02 0.17
Matches are distributed among these distances:
11 11 0.33
12 11 0.33
13 6 0.18
14 5 0.15
ACGTcount: A:0.59, C:0.02, G:0.00, T:0.39
Consensus pattern (11 bp):
ATTAATAAAAT
Found at i:10167547 original size:14 final size:13
Alignment explanation
Indices: 10167515--10167570 Score: 55
Period size: 12 Copynumber: 4.4 Consensus size: 13
10167505 ATTTACTTTA
*
10167515 ATTAATTAAA-AT
1 ATTAATAAAATAT
10167527 ATTAATAAAATAT
1 ATTAATAAAATAT
10167540 ATTTAAT-AAA-AT
1 A-TTAATAAAATAT
*
10167552 ATTACTAAAATAAT
1 ATTAATAAAAT-AT
10167566 ATTAA
1 ATTAA
10167571 ATAATTTTAT
Statistics
Matches: 36, Mismatches: 3, Indels: 8
0.77 0.06 0.17
Matches are distributed among these distances:
11 4 0.11
12 15 0.42
13 6 0.17
14 11 0.31
ACGTcount: A:0.59, C:0.02, G:0.00, T:0.39
Consensus pattern (13 bp):
ATTAATAAAATAT
Found at i:10167551 original size:25 final size:26
Alignment explanation
Indices: 10167516--10167574 Score: 84
Period size: 25 Copynumber: 2.3 Consensus size: 26
10167506 TTTACTTTAA
10167516 TTAATTAAAATATTAATAAAAT-ATAT
1 TTAA-TAAAATATTAATAAAATAATAT
*
10167542 TTAATAAAATATTACTAAAATAATAT
1 TTAATAAAATATTAATAAAATAATAT
*
10167568 TAAATAA
1 TTAATAA
10167575 TTTTATCTAA
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
25 16 0.53
26 14 0.47
ACGTcount: A:0.59, C:0.02, G:0.00, T:0.39
Consensus pattern (26 bp):
TTAATAAAATATTAATAAAATAATAT
Found at i:10169131 original size:47 final size:47
Alignment explanation
Indices: 10169065--10169197 Score: 164
Period size: 47 Copynumber: 2.8 Consensus size: 47
10169055 CACATTATAA
*
10169065 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGACATCGAGA-C-
1 GAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGACAT-GAGATCT
* *
10169111 GAGTGCTAGTGTAAGA-CATGTTTGGGACATGGCATCGCCATGAGATCT
1 GA--GCTAGTGTAAGACCATGTCTGGGACATGGCATCGACATGAGATCT
* * *
10169159 GAGCTAGTTTAAGACCGTGTCTGGGACATGGCACCGACA
1 GAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGACA
10169198 CCTTACCCAC
Statistics
Matches: 74, Mismatches: 8, Indels: 9
0.81 0.09 0.10
Matches are distributed among these distances:
46 17 0.23
47 44 0.59
48 13 0.18
ACGTcount: A:0.26, C:0.21, G:0.31, T:0.22
Consensus pattern (47 bp):
GAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGACATGAGATCT
Found at i:10176646 original size:47 final size:46
Alignment explanation
Indices: 10176536--10176806 Score: 182
Period size: 47 Copynumber: 5.8 Consensus size: 46
10176526 GTTATTGTGG
* * * *
10176536 GCTAGTGTAAGACATGTCAGGGACAT-GCATC--AATCGCATTATGAGA
1 GCTAGTGTAAGACATGTCTGGGACATGGCATCGGCATCG-A-GACGA-A
* * * *
10176582 GCCAGTGTAAGACCATGTTTGGGACATGGCATCGGCATCAAGACGAGT
1 GCTAGTGTAAGA-CATGTCTGGGACATGGCATCGGCATCGAGACGA-A
* * * * *
10176630 GCTAGTGTAAGACATGTTTGGGACAT-GCATTGGCCTTGAGACTTAA
1 GCTAGTGTAAGACATGTCTGGGACATGGCATCGGCATCGAGAC-GAA
* *
10176676 GCCAGTGTAAGACATGTCTGGGACAT-GCATCGGC-TACGAGATGATA
1 GCTAGTGTAAGACATGTCTGGGACATGGCATCGGCAT-CGAGACGA-A
* * *
10176722 G-TCAGTGTAAGACCATGTCTGGGACATGGCATTGACAT-GAGA-TATGA
1 GCT-AGTGTAAGA-CATGTCTGGGACATGGCATCGGCATCGAGACGA--A
* *
10176769 GCTAGTGTAAGACAGTGTCTGGGACACGGCATCAGCAT
1 GCTAGTGTAAGACA-TGTCTGGGACATGGCATCGGCAT
10176807 TTTACCCACG
Statistics
Matches: 181, Mismatches: 30, Indels: 27
0.76 0.13 0.11
Matches are distributed among these distances:
45 2 0.01
46 72 0.40
47 75 0.41
48 27 0.15
49 2 0.01
50 3 0.02
ACGTcount: A:0.28, C:0.18, G:0.30, T:0.24
Consensus pattern (46 bp):
GCTAGTGTAAGACATGTCTGGGACATGGCATCGGCATCGAGACGAA
Found at i:10176698 original size:46 final size:44
Alignment explanation
Indices: 10176633--10176794 Score: 171
Period size: 46 Copynumber: 3.5 Consensus size: 44
10176623 GACGAGTGCT
*
10176633 AGTGTAAGACATGTTTGGGACATGCATTGGCCTTGAGACTTAAGCC
1 AGTGTAAGACATGTCTGGGACATGCATTGG-CTTGAGA-TTAAGCC
* * * *
10176679 AGTGTAAGACATGTCTGGGACATGCATCGGCTACGAGATGATAGTC
1 AGTGTAAGACATGTCTGGGACATGCATTGGCT-TGAGATTA-AGCC
* * * *
10176725 AGTGTAAGACCATGTCTGGGACATGGCATTGACATGAGATATGAGCT
1 AGTGTAAGA-CATGTCTGGGACAT-GCATTGGCTTGAGAT-TAAGCC
10176772 AGTGTAAGACAGTGTCTGGGACA
1 AGTGTAAGACA-TGTCTGGGACA
10176795 CGGCATCAGC
Statistics
Matches: 97, Mismatches: 13, Indels: 11
0.80 0.11 0.09
Matches are distributed among these distances:
45 4 0.04
46 46 0.47
47 41 0.42
48 6 0.06
ACGTcount: A:0.28, C:0.16, G:0.30, T:0.25
Consensus pattern (44 bp):
AGTGTAAGACATGTCTGGGACATGCATTGGCTTGAGATTAAGCC
Found at i:10176792 original size:140 final size:140
Alignment explanation
Indices: 10176539--10176794 Score: 331
Period size: 140 Copynumber: 1.8 Consensus size: 140
10176529 ATTGTGGGCT
* *
10176539 AGTGTAAGACATGTCAGGGACATGCATCAATCGCATTATGAGAGCCAGTGTAAGACCATGTTTGG
1 AGTGTAAGACATGTCAGGGACATGCATCAATCGCATGATGAGAGCCAGTGTAAGACCATGTCTGG
* * *
10176604 GACATGGCATCGGCATCAAGACGAGTGCTAGTGTAAGACATGTTTGGGACATGCATTGGCCTTGA
66 GACATGGCATCGACATCAAGACGAGAGCTAGTGTAAGACATGTCTGGGACATGCATTGGCCTTGA
10176669 GACTTAAGCC
131 GACTTAAGCC
* ** * *
10176679 AGTGTAAGACATGTCTGGGACATGCATCGGCTACG-A-GATGATAGTCAGTGTAAGACCATGTCT
1 AGTGTAAGACATGTCAGGGACATGCATC-AAT-CGCATGATGAGAGCCAGTGTAAGACCATGTCT
* * *
10176742 GGGACATGGCATTGACAT-GAGA-TATGAGCTAGTGTAAGACAGTGTCTGGGACA
64 GGGACATGGCATCGACATCAAGACGA-GAGCTAGTGTAAGACA-TGTCTGGGACA
10176795 CGGCATCAGC
Statistics
Matches: 99, Mismatches: 13, Indels: 8
0.82 0.11 0.07
Matches are distributed among these distances:
138 1 0.01
139 18 0.18
140 76 0.77
141 2 0.02
142 2 0.02
ACGTcount: A:0.29, C:0.17, G:0.30, T:0.24
Consensus pattern (140 bp):
AGTGTAAGACATGTCAGGGACATGCATCAATCGCATGATGAGAGCCAGTGTAAGACCATGTCTGG
GACATGGCATCGACATCAAGACGAGAGCTAGTGTAAGACATGTCTGGGACATGCATTGGCCTTGA
GACTTAAGCC
Found at i:10177898 original size:21 final size:21
Alignment explanation
Indices: 10177874--10177921 Score: 60
Period size: 21 Copynumber: 2.3 Consensus size: 21
10177864 TTGAAAAGGC
10177874 ACACGGGCGTGTTGCCCTTCT
1 ACACGGGCGTGTTGCCCTTCT
** * *
10177895 ACACAAGCGTGTTGCTCTTTT
1 ACACGGGCGTGTTGCCCTTCT
10177916 ACACGG
1 ACACGG
10177922 TGAGTGCCCT
Statistics
Matches: 21, Mismatches: 6, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.17, C:0.29, G:0.25, T:0.29
Consensus pattern (21 bp):
ACACGGGCGTGTTGCCCTTCT
Found at i:10178966 original size:20 final size:20
Alignment explanation
Indices: 10178941--10178981 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
10178931 ACATTCTATT
10178941 AATAGAATAAAACTATACAA
1 AATAGAATAAAACTATACAA
10178961 AATAGAATAAAACTATACAA
1 AATAGAATAAAACTATACAA
10178981 A
1 A
10178982 CTTGCTACAT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.66, C:0.10, G:0.05, T:0.20
Consensus pattern (20 bp):
AATAGAATAAAACTATACAA
Found at i:10182708 original size:23 final size:23
Alignment explanation
Indices: 10182651--10182769 Score: 157
Period size: 23 Copynumber: 5.1 Consensus size: 23
10182641 CCTAGCCTCT
* * * *
10182651 TTTAATAACTAGGGTAAAAGTCCT
1 TTTAATAACTGGGGCATAAG-CCC
* *
10182675 TTTTATAACTGGGACATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
*
10182698 TTTAATAACTGGGGCGTAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
*
10182721 TTTGATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
10182744 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
10182767 TTT
1 TTT
10182770 TTCACTTCCT
Statistics
Matches: 83, Mismatches: 12, Indels: 1
0.86 0.12 0.01
Matches are distributed among these distances:
23 68 0.82
24 15 0.18
ACGTcount: A:0.29, C:0.19, G:0.21, T:0.30
Consensus pattern (23 bp):
TTTAATAACTGGGGCATAAGCCC
Found at i:10182845 original size:20 final size:20
Alignment explanation
Indices: 10182820--10182886 Score: 116
Period size: 20 Copynumber: 3.4 Consensus size: 20
10182810 TTATGAATAC
10182820 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
10182840 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
10182860 GTCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
10182880 ACCATGT
1 ATCATGT
10182887 TTATCAAAAT
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 44 1.00
ACGTcount: A:0.33, C:0.21, G:0.12, T:0.34
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:10182851 original size:11 final size:11
Alignment explanation
Indices: 10182820--10182875 Score: 57
Period size: 11 Copynumber: 5.5 Consensus size: 11
10182810 TTATGAATAC
10182820 ATCATGTGCAT
1 ATCATGTGCAT
*
10182831 ATCA--TACAT
1 ATCATGTGCAT
10182840 ATCATGTGCAT
1 ATCATGTGCAT
*
10182851 ATCA--TACAT
1 ATCATGTGCAT
*
10182860 GTCATGTGCAT
1 ATCATGTGCAT
10182871 ATCAT
1 ATCAT
10182876 ACATACCATG
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
9 15 0.43
11 20 0.57
ACGTcount: A:0.32, C:0.20, G:0.12, T:0.36
Consensus pattern (11 bp):
ATCATGTGCAT
Found at i:10184181 original size:27 final size:27
Alignment explanation
Indices: 10184129--10184196 Score: 84
Period size: 27 Copynumber: 2.5 Consensus size: 27
10184119 GGGCATATTC
* * *
10184129 GTCATTTTACCATACAGGGGTATTACG
1 GTCATTTTACCCTACAGGGCTATTACA
10184156 GTCATTTTACCCTACAGGCGCT-TTACA
1 GTCATTTTACCCTACAGG-GCTATTACA
*
10184183 GTCACTTTACCCTA
1 GTCATTTTACCCTA
10184197 ATAGGGGCAT
Statistics
Matches: 36, Mismatches: 4, Indels: 2
0.86 0.10 0.05
Matches are distributed among these distances:
27 34 0.94
28 2 0.06
ACGTcount: A:0.24, C:0.26, G:0.16, T:0.34
Consensus pattern (27 bp):
GTCATTTTACCCTACAGGGCTATTACA
Found at i:10184361 original size:27 final size:27
Alignment explanation
Indices: 10184225--10184463 Score: 176
Period size: 27 Copynumber: 8.8 Consensus size: 27
10184215 TTTCATCCTA
* * ** *
10184225 CAAGGGTGTTTTGGTAAATCAACAAAC
1 CAAGGGTATTTTGGTAATTTTACAAAT
* ** ** *
10184252 CAAAGGTATTTCAGTAATTTTGTAAAC
1 CAAGGGTATTTTGGTAATTTTACAAAT
* * *
10184279 CAATGGTATTTCT-ATAATTTTTAGAAAGT
1 CAAGGGTATTT-TGGTAA-TTTTACAAA-T
* * **
10184308 CAAGGGTATTTTTGTAACTTTGTAAAT
1 CAAGGGTATTTTGGTAATTTTACAAAT
*
10184335 CAGGGGTATTTTGGTAATTTTACAAAT
1 CAAGGGTATTTTGGTAATTTTACAAAT
** * * *
10184362 TGAGGGTATTTCGGTAATTTCACAAAC
1 CAAGGGTATTTTGGTAATTTTACAAAT
*
10184389 CAAGGATATTTTGGTAATTTTACAAA-
1 CAAGGGTATTTTGGTAATTTTACAAAT
* *
10184415 CTAGGGGTATTTTGGTAATTTTACAAAC
1 C-AAGGGTATTTTGGTAATTTTACAAAT
*
10184443 CAAGGGTATTTTAGTAATTTT
1 CAAGGGTATTTTGGTAATTTT
10184464 GTAAATTCAG
Statistics
Matches: 166, Mismatches: 40, Indels: 12
0.76 0.18 0.06
Matches are distributed among these distances:
26 1 0.01
27 137 0.83
28 15 0.09
29 13 0.08
ACGTcount: A:0.33, C:0.10, G:0.19, T:0.39
Consensus pattern (27 bp):
CAAGGGTATTTTGGTAATTTTACAAAT
Found at i:10184399 original size:54 final size:53
Alignment explanation
Indices: 10184341--10184477 Score: 184
Period size: 54 Copynumber: 2.5 Consensus size: 53
10184331 AAATCAGGGG
10184341 TATTTTGGTAATTTTACAAATTGAGGGTATTTCGGTAATTTCACAAACCAAGGA
1 TATTTTGGTAATTTTACAAATT-AGGGTATTTCGGTAATTTCACAAACCAAGGA
* * * *
10184395 TATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTACAAACCAAGGG
1 TATTTTGGTAATTTTACAAATTA-GGGTATTTCGGTAATTTCACAAACCAAGGA
* **
10184449 TATTTTAGTAATTTTGTAAATTCAGGGTA
1 TATTTTGGTAATTTTACAAATT-AGGGTA
10184478 AAATAGTAAT
Statistics
Matches: 73, Mismatches: 8, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
53 1 0.01
54 71 0.97
55 1 0.01
ACGTcount: A:0.32, C:0.09, G:0.19, T:0.40
Consensus pattern (53 bp):
TATTTTGGTAATTTTACAAATTAGGGTATTTCGGTAATTTCACAAACCAAGGA
Found at i:10184475 original size:27 final size:27
Alignment explanation
Indices: 10184256--10184524 Score: 157
Period size: 27 Copynumber: 9.9 Consensus size: 27
10184246 ACAAACCAAA
* * * *
10184256 GGTATTTCAGTAATTTTGTAAACCAAT
1 GGTATTTTAGTAATTTTATAAATCAAG
*
10184283 GGTATTTCTA-TAATTTTTAGAAAGTCAAG
1 GGTATTT-TAGTAA-TTTTATAAA-TCAAG
* * * *
10184312 GGTATTTTTGTAACTTTGTAAATCAGG
1 GGTATTTTAGTAATTTTATAAATCAAG
* * **
10184339 GGTATTTTGGTAATTTTACAAATTGAG
1 GGTATTTTAGTAATTTTATAAATCAAG
** * * *
10184366 GGTATTTCGGTAATTTCACAAACCAAG
1 GGTATTTTAGTAATTTTATAAATCAAG
* * * *
10184393 GATATTTTGGTAATTTTACAAA-CTAGG
1 GGTATTTTAGTAATTTTATAAATC-AAG
* * *
10184420 GGTATTTTGGTAATTTTACAAACCAAG
1 GGTATTTTAGTAATTTTATAAATCAAG
*
10184447 GGTATTTTAGTAATTTTGTAAATTC-AG
1 GGTATTTTAGTAATTTTATAAA-TCAAG
*** * *
10184474 GGTAAAATAGTAATTCTGTAAATCAAG
1 GGTATTTTAGTAATTTTATAAATCAAG
*** *
10184501 GGTAAAATAGTAATTCTATAAATC
1 GGTATTTTAGTAATTTTATAAATC
10184525 GACGGTAAAA
Statistics
Matches: 197, Mismatches: 37, Indels: 16
0.79 0.15 0.06
Matches are distributed among these distances:
26 3 0.02
27 164 0.83
28 17 0.09
29 13 0.07
ACGTcount: A:0.34, C:0.09, G:0.18, T:0.39
Consensus pattern (27 bp):
GGTATTTTAGTAATTTTATAAATCAAG
Found at i:10184589 original size:27 final size:27
Alignment explanation
Indices: 10184454--10184588 Score: 157
Period size: 27 Copynumber: 5.0 Consensus size: 27
10184444 AAGGGTATTT
* *
10184454 TAGTAATTTTGTAAATTC-AGGGTAAAA
1 TAGTAATTCTATAAA-TCGAGGGTAAAA
* *
10184481 TAGTAATTCTGTAAATCAAGGGTAAAA
1 TAGTAATTCTATAAATCGAGGGTAAAA
*
10184508 TAGTAATTCTATAAATCGACGGTAAAA
1 TAGTAATTCTATAAATCGAGGGTAAAA
*
10184535 T-GATAATTCTGTAAATCGAGGGTAAAA
1 TAG-TAATTCTATAAATCGAGGGTAAAA
** *
10184562 CGGTAATTCTATAAGTCGAGGGTAAAA
1 TAGTAATTCTATAAATCGAGGGTAAAA
10184589 CAGGGGTAAA
Statistics
Matches: 96, Mismatches: 9, Indels: 6
0.86 0.08 0.05
Matches are distributed among these distances:
26 3 0.03
27 92 0.96
28 1 0.01
ACGTcount: A:0.41, C:0.08, G:0.20, T:0.30
Consensus pattern (27 bp):
TAGTAATTCTATAAATCGAGGGTAAAA
Found at i:10184596 original size:38 final size:38
Alignment explanation
Indices: 10184554--10184626 Score: 101
Period size: 38 Copynumber: 1.9 Consensus size: 38
10184544 TGTAAATCGA
* *
10184554 GGGTAAAACGGTAATTCTATAAGTCGAGGGTAAAACAG
1 GGGTAAAACGGTAATTATATAAATCGAGGGTAAAACAG
* * *
10184592 GGGTAAAATGGTAATTATGTAAATCGGGGGTAAAA
1 GGGTAAAACGGTAATTATATAAATCGAGGGTAAAA
10184627 TGGTAATTCT
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
38 30 1.00
ACGTcount: A:0.40, C:0.07, G:0.30, T:0.23
Consensus pattern (38 bp):
GGGTAAAACGGTAATTATATAAATCGAGGGTAAAACAG
Found at i:10184607 original size:65 final size:65
Alignment explanation
Indices: 10184528--10184650 Score: 183
Period size: 65 Copynumber: 1.9 Consensus size: 65
10184518 ATAAATCGAC
* *
10184528 GGTAAAATGATAATTCTGTAAATCGAGGGTAAAACGGTAATTCTATAAGTCGAGGGTAAAACAGG
1 GGTAAAATGATAATTATGTAAATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAACAGG
* * * * *
10184593 GGTAAAATGGTAATTATGTAAATCGGGGGTAAAATGGTAATTCTGTAAATCGGGGGTA
1 GGTAAAATGATAATTATGTAAATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTA
10184651 CTTTGGTAAT
Statistics
Matches: 51, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
65 51 1.00
ACGTcount: A:0.37, C:0.07, G:0.28, T:0.27
Consensus pattern (65 bp):
GGTAAAATGATAATTATGTAAATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAACAGG
Found at i:10184659 original size:92 final size:92
Alignment explanation
Indices: 10184491--10184677 Score: 230
Period size: 92 Copynumber: 2.0 Consensus size: 92
10184481 TAGTAATTCT
* *
10184491 GTAAATCAAGGGTAAAATAGTAATTCTATAAATCGACGGTAAAATGATAATTCTGTAAATCGAGG
1 GTAAAACAAGGGTAAAATAGTAATTATATAAATCGACGGTAAAATGATAATTCTGTAAATCGAGG
* *
10184556 GTAAAACGGTAATTCTATAAGTCGAGG
66 GTAAAACGGTAATTCTACAAGTCGAAG
* * * ** * *
10184583 GTAAAACAGGGGTAAAATGGTAATTATGTAAATCGGGGGTAAAATGGTAATTCTGTAAATCGGGG
1 GTAAAACAAGGGTAAAATAGTAATTATATAAATCGACGGTAAAATGATAATTCTGTAAATCGAGG
**** *
10184648 GTACTTTGGTAATTTTACAAGTCGAAG
66 GTAAAACGGTAATTCTACAAGTCGAAG
10184675 GTA
1 GTA
10184678 TTTCAGTAAT
Statistics
Matches: 79, Mismatches: 16, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
92 79 1.00
ACGTcount: A:0.38, C:0.09, G:0.25, T:0.28
Consensus pattern (92 bp):
GTAAAACAAGGGTAAAATAGTAATTATATAAATCGACGGTAAAATGATAATTCTGTAAATCGAGG
GTAAAACGGTAATTCTACAAGTCGAAG
Found at i:10184661 original size:27 final size:27
Alignment explanation
Indices: 10184591--10184650 Score: 111
Period size: 27 Copynumber: 2.2 Consensus size: 27
10184581 GGGTAAAACA
10184591 GGGGTAAAATGGTAATTATGTAAATCG
1 GGGGTAAAATGGTAATTATGTAAATCG
*
10184618 GGGGTAAAATGGTAATTCTGTAAATCG
1 GGGGTAAAATGGTAATTATGTAAATCG
10184645 GGGGTA
1 GGGGTA
10184651 CTTTGGTAAT
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
27 32 1.00
ACGTcount: A:0.33, C:0.05, G:0.33, T:0.28
Consensus pattern (27 bp):
GGGGTAAAATGGTAATTATGTAAATCG
Found at i:10184728 original size:26 final size:27
Alignment explanation
Indices: 10184656--10184744 Score: 110
Period size: 27 Copynumber: 3.3 Consensus size: 27
10184646 GGGTACTTTG
*
10184656 GTAATTTTACAAGTCGAA-GGTATTTCA
1 GTAATTTTACAAATC-AAGGGTATTTCA
*
10184683 GTAATTTTACAAATCGAGGGTATTTCA
1 GTAATTTTACAAATCAAGGGTATTTCA
* * *
10184710 GTATTTTTACAACT-AAGGGTATTTCG
1 GTAATTTTACAAATCAAGGGTATTTCA
10184736 GTAATTTTA
1 GTAATTTTA
10184745 GTAAACTAAA
Statistics
Matches: 54, Mismatches: 7, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
26 19 0.35
27 35 0.65
ACGTcount: A:0.31, C:0.10, G:0.18, T:0.40
Consensus pattern (27 bp):
GTAATTTTACAAATCAAGGGTATTTCA
Found at i:10187398 original size:28 final size:27
Alignment explanation
Indices: 10187355--10187434 Score: 117
Period size: 28 Copynumber: 2.9 Consensus size: 27
10187345 TGGAAAGTAG
10187355 TTGGGCCTGA-GGGCCATATGAATATGA
1 TTGGGCCTGATGGGCCATATGAATA-GA
* *
10187382 TTGGGCTTGATGGGCCATATGAACGAGA
1 TTGGGCCTGATGGGCCATATGAA-TAGA
10187410 TTGGGCCTGATGGGCCATATGAATA
1 TTGGGCCTGATGGGCCATATGAATA
10187435 AGTATGGATC
Statistics
Matches: 47, Mismatches: 4, Indels: 4
0.85 0.07 0.07
Matches are distributed among these distances:
27 10 0.21
28 36 0.77
29 1 0.02
ACGTcount: A:0.25, C:0.15, G:0.34, T:0.26
Consensus pattern (27 bp):
TTGGGCCTGATGGGCCATATGAATAGA
Found at i:10187763 original size:27 final size:27
Alignment explanation
Indices: 10187733--10188018 Score: 296
Period size: 27 Copynumber: 10.6 Consensus size: 27
10187723 ATAATAAGAG
*
10187733 AAATTATTGAAATACCCTCGATTTGTA
1 AAATTATCGAAATACCCTCGATTTGTA
*
10187760 AAATTATCGAAATACCCTCGATTTGTG
1 AAATTATCGAAATACCCTCGATTTGTA
*
10187787 AAATTATCGAAATACCCTCGA-TTGTG
1 AAATTATCGAAATACCCTCGATTTGTA
* *
10187813 AAATTA-CTGAAAGACCCTCAATTTGTA
1 AAATTATC-GAAATACCCTCGATTTGTA
* * *
10187840 AAATTATCAAAAATACCCTTGA-TTGTG
1 AAATTATC-GAAATACCCTCGATTTGTA
10187867 AAATTATCGAAATACCCTCGATTTGTA
1 AAATTATCGAAATACCCTCGATTTGTA
* * * *
10187894 AAATTACCAAAATACCC-CTAATTTGTG
1 AAATTATCGAAATACCCTC-GATTTGTA
*
10187921 AAATTATCGAAACACCCTCGATTTGTA
1 AAATTATCGAAATACCCTCGATTTGTA
* * *
10187948 AAATTATTGAAATACCCTTG-TAGTGTA
1 AAATTATCGAAATACCCTCGAT-TTGTA
* * *
10187975 AAATTACCGAAATACCCTTG-TAGTGTA
1 AAATTATCGAAATACCCTCGAT-TTGTA
* *
10188002 AAATGATCGACATACCC
1 AAATTATCGAAATACCC
10188019 CTATAAGGTA
Statistics
Matches: 220, Mismatches: 32, Indels: 14
0.83 0.12 0.05
Matches are distributed among these distances:
25 1 0.00
26 35 0.16
27 173 0.79
28 11 0.05
ACGTcount: A:0.38, C:0.19, G:0.12, T:0.31
Consensus pattern (27 bp):
AAATTATCGAAATACCCTCGATTTGTA
Found at i:10188011 original size:81 final size:79
Alignment explanation
Indices: 10187741--10187992 Score: 326
Period size: 81 Copynumber: 3.1 Consensus size: 79
10187731 AGAAATTATT
*
10187741 GAAATACCCTCGATTTGTAAAATTATCGAAATACCCTCGATTTGTGAAATTATCGAAATACCCTC
1 GAAATACCCT-AATTTGTAAAATTATCGAAATACCCTCGATTTGTGAAATTATCGAAATACCCTC
* *
10187806 GATTGTGAAATTACT
65 GATTGTAAAATTACC
* * *
10187821 GAAAGACCCTCAATTTGTAAAATTATCAAAAATACCCTTGA-TTGTGAAATTATCGAAATACCCT
1 GAAATACCCT-AATTTGTAAAATTATC-GAAATACCCTCGATTTGTGAAATTATCGAAATACCCT
10187885 CGATTTGTAAAATTACC
64 CGA-TTGTAAAATTACC
* * * * * *
10187902 AAAATACCCCTAATTTGTGAAATTATCGAAACACCCTCGATTTGTAAAATTATTGAAATACCCTT
1 GAAATA-CCCTAATTTGTAAAATTATCGAAATACCCTCGATTTGTGAAATTATCGAAATACCCTC
*
10187967 GTAGTGTAAAATTACC
65 G-ATTGTAAAATTACC
10187983 GAAATACCCT
1 GAAATACCCT
10187993 TGTAGTGTAA
Statistics
Matches: 150, Mismatches: 17, Indels: 10
0.85 0.10 0.06
Matches are distributed among these distances:
80 65 0.43
81 80 0.53
82 5 0.03
ACGTcount: A:0.38, C:0.19, G:0.12, T:0.31
Consensus pattern (79 bp):
GAAATACCCTAATTTGTAAAATTATCGAAATACCCTCGATTTGTGAAATTATCGAAATACCCTCG
ATTGTAAAATTACC
Found at i:10192163 original size:21 final size:21
Alignment explanation
Indices: 10192134--10192173 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
10192124 GATTACGGTT
10192134 AGATCTAGA-AAAGTGAAATTC
1 AGATCTAGATAAAG-GAAATTC
*
10192155 AGATTTAGATAAAGGAAAT
1 AGATCTAGATAAAGGAAAT
10192174 AACAAAATAT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
21 13 0.76
22 4 0.24
ACGTcount: A:0.50, C:0.05, G:0.20, T:0.25
Consensus pattern (21 bp):
AGATCTAGATAAAGGAAATTC
Found at i:10192707 original size:545 final size:544
Alignment explanation
Indices: 10191298--10192859 Score: 2786
Period size: 543 Copynumber: 2.9 Consensus size: 544
10191288 TTAGATAAAC
10191298 AACATTTGTTAAGTGATTTTTAGTAAAATGTCCAATTAGGGATTAAATTGTGAAATGTGTAAATT
1 AACATTTGTTAAGTGATTTTTAGTAAAATGTCCAATTAGGGATTAAATTGTGAAATGTGTAAATT
* *
10191363 TTGTGGGTAAATTGTGAAATAAAT-AAAAATATGGACTAATAGAGACCTAATTGAAATTCGGCTA
66 TTGTGGGTAAATTGTGAAATAAATAAAAAATATGGACTGATAGGGACCTAATTGAAATTCGGCTA
*
10191427 GCATGGGTTTTGGTTGAATTGCATGGATTTGTAATTTTATGAAATAATGACTAAATTGTAAAAAT
131 GCATGGGTTTTGGTTGAATTGCATGAATTTGTAATTTTATGAAATAATGACTAAATTGTAAAAAT
*
10191492 GTTGAAATGTTAGGGGCAAAAATATAAAATTGCCTTAATGTGTGGTTTGGATTAAATTGAATAGA
196 GTTGAAATGTTAGGGGAAAAAATATAAAATTGCCTTAATGTGTGGTTTGGATTAAATTGAATAGA
10191557 GAGATTATTAAATAAGTTAATTTTGATTACGGTTAGATCAAGAAAAGTGAAATTCAGATTTAGAT
261 GAGATTATTAAATAAGTTAATTTTGATTACGGTTAGATCAAGAAAAGTGAAATTCAGATTTAGAT
10191622 CAGGGAAAGAACAAAATATCGGACTAATCGACTTATTTTGTTGTTTTTGCATTCGAGGTAAGTTC
326 CAGGGAAAGAACAAAATATCGGACTAATCGACTTATTTTGTTGTTTTTGCATTCGAGGTAAGTTC
* * *
10191687 GTATGTAATAAGCTTTGTTATAATTGTATTTTAAATGTTATAATATTGTATAAATTATGAATACG
391 GTATGTAATAAGCTTTGTTATAATTGTATTTTAAATGCTATAATATTGCATAAATTGTGAATACG
*
10191752 ACTCTACGGACATGTTCTATGACAATTCGACAAGTGTGAAATCTCAGTTGAACCTTAGGAATAGA
456 ACTCTACGGACATGTTCTACGACAATTCGACAAGTGTGAAATCTCAGTTGAACCTTAGGAATAGA
10191817 TTAGGATACGAATGACATGTCATT
521 TTAGGATACGAATGACATGTCATT
10191841 AACATTT-TTAAGTGATTTTTAGTAAAATGTCCAATTAGGGATTAAATTGTGAAATGTGTAAATT
1 AACATTTGTTAAGTGATTTTTAGTAAAATGTCCAATTAGGGATTAAATTGTGAAATGTGTAAATT
*
10191905 TTGTGGGTAAATTGTAAAATAAATAAAAAATATGGACTGATAGGGACCTAATTGAAATTCGGCTA
66 TTGTGGGTAAATTGTGAAATAAATAAAAAATATGGACTGATAGGGACCTAATTGAAATTCGGCTA
*
10191970 GCATGGGTTTTGGTTGAATTGGATGAATTTGTAATTTTATGAAATAATGACTAAATTGTAAAAAT
131 GCATGGGTTTTGGTTGAATTGCATGAATTTGTAATTTTATGAAATAATGACTAAATTGTAAAAAT
* *
10192035 GTTGAAATGTTAGGGGAAAAAATATAAACTTACCTTAATGTGTGGTTTGGATTAAATTGAATAGA
196 GTTGAAATGTTAGGGGAAAAAATATAAAATTGCCTTAATGTGTGGTTTGGATTAAATTGAATAGA
*
10192100 GAGATTATTAAATAAGTTAATTTTGATTACGGTTAGATCTAGAAAAGTGAAATTCAGATTTAGAT
261 GAGATTATTAAATAAGTTAATTTTGATTACGGTTAGATCAAGAAAAGTGAAATTCAGATTTAGAT
* * * * *
10192165 AAAGGAAATAACAAAATATCAGACTAATCGACTTATTTTGTTGTTTTTGCATTCGAGGTAAATTC
326 CAGGGAAAGAACAAAATATCGGACTAATCGACTTATTTTGTTGTTTTTGCATTCGAGGTAAGTTC
* *
10192230 GTATGTAATAAGCTTTGTTATAATTGTATTTTAAATGCAATAATATTGCATAAATTGTGAATATG
391 GTATGTAATAAGCTTTGTTATAATTGTATTTTAAATGCTATAATATTGCATAAATTGTGAATACG
* * * *
10192295 ACTCTATGGGCATGTTCTACGACAATTCGGCAAGTGTGAAATCTCGGTTGAACCTTAGGAATAGA
456 ACTCTACGGACATGTTCTACGACAATTCGACAAGTGTGAAATCTCAGTTGAACCTTAGGAATAGA
* *
10192360 TTAGGATACGAGTGACATGTGATT
521 TTAGGATACGAATGACATGTCATT
10192384 AACATTTGTTAAGTGATTTTTAGTAAAATGTCCAATTAGGGATTAAATTGTGAAATGTGTAAATT
1 AACATTTGTTAAGTGATTTTTAGTAAAATGTCCAATTAGGGATTAAATTGTGAAATGTGTAAATT
*
10192449 TTGTGGGTAAGTTGTGAAATAAATAAAAAAATATGGACTGATAGGGACCTAATTGAAATTCGGCT
66 TTGTGGGTAAATTGTGAAATAAAT-AAAAAATATGGACTGATAGGGACCTAATTGAAATTCGGCT
* ** *
10192514 AGCATGGGTTTTGGTTGAATTGCATGAATTTGTTATTTTATGAAATAATGAGGAAGTTGTAAAAA
130 AGCATGGGTTTTGGTTGAATTGCATGAATTTGTAATTTTATGAAATAATGACTAAATTGTAAAAA
10192579 TGTTGAAATGTTAGGGGAAAAAATATAAAATTGCCTTAATGTGTGGTTTGGATTAAATTGAATAG
195 TGTTGAAATGTTAGGGGAAAAAATATAAAATTGCCTTAATGTGTGGTTTGGATTAAATTGAATAG
* *
10192644 AGAGATTATTAAATAAGTTAATTTTGTTTACGATTAGATCAAGAAAAGTGAAATTCAGATTTAGA
260 AGAGATTATTAAATAAGTTAATTTTGATTACGGTTAGATCAAGAAAAGTGAAATTCAGATTTAGA
* *
10192709 TCAGGGAAAGAACAAAATATCGGACTAATTGACTTATTTTTTTGTTTTTGCATTCGAGGTAAGTT
325 TCAGGGAAAGAACAAAATATCGGACTAATCGACTTATTTTGTTGTTTTTGCATTCGAGGTAAGTT
10192774 CGTATGTAATAAGCTTTGTTATAATTGTATTTTAAATGCTATAATATTGCATAAATTGTGAATAC
390 CGTATGTAATAAGCTTTGTTATAATTGTATTTTAAATGCTATAATATTGCATAAATTGTGAATAC
10192839 GACTCTACGGACATGTTCTAC
455 GACTCTACGGACATGTTCTAC
10192860 CGGTGGCTGA
Statistics
Matches: 967, Mismatches: 49, Indels: 4
0.95 0.05 0.00
Matches are distributed among these distances:
542 80 0.08
543 443 0.46
544 79 0.08
545 365 0.38
ACGTcount: A:0.36, C:0.07, G:0.20, T:0.36
Consensus pattern (544 bp):
AACATTTGTTAAGTGATTTTTAGTAAAATGTCCAATTAGGGATTAAATTGTGAAATGTGTAAATT
TTGTGGGTAAATTGTGAAATAAATAAAAAATATGGACTGATAGGGACCTAATTGAAATTCGGCTA
GCATGGGTTTTGGTTGAATTGCATGAATTTGTAATTTTATGAAATAATGACTAAATTGTAAAAAT
GTTGAAATGTTAGGGGAAAAAATATAAAATTGCCTTAATGTGTGGTTTGGATTAAATTGAATAGA
GAGATTATTAAATAAGTTAATTTTGATTACGGTTAGATCAAGAAAAGTGAAATTCAGATTTAGAT
CAGGGAAAGAACAAAATATCGGACTAATCGACTTATTTTGTTGTTTTTGCATTCGAGGTAAGTTC
GTATGTAATAAGCTTTGTTATAATTGTATTTTAAATGCTATAATATTGCATAAATTGTGAATACG
ACTCTACGGACATGTTCTACGACAATTCGACAAGTGTGAAATCTCAGTTGAACCTTAGGAATAGA
TTAGGATACGAATGACATGTCATT
Done.