Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr3
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 100348136
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 3062571 characters in sequence are not A, C, G, or T
File 30 of 290
Found at i:10195620 original size:43 final size:42
Alignment explanation
Indices: 10195557--10195678 Score: 151
Period size: 43 Copynumber: 2.9 Consensus size: 42
10195547 TACAGTACCA
* *
10195557 ATGCCATATCCCAGATATGGTCTTACATGTAATCTCGTATCG
1 ATGCCATATGCCAGATATGGTCTTACACGTAATCTCGTATCG
*
10195599 ATGCCA-ATAGCCCA-ACTATGGTCTTACACG-AAGTCTCATATCG
1 ATGCCATAT-G-CCAGA-TATGGTCTTACACGTAA-TCTCGTATCG
*
10195642 ATGCCATATGCCAGATATGGTCTTATACGTAATCTCG
1 ATGCCATATGCCAGATATGGTCTTACACGTAATCTCG
10195679 GTAATCCTAA
Statistics
Matches: 68, Mismatches: 5, Indels: 14
0.78 0.06 0.16
Matches are distributed among these distances:
41 2 0.03
42 29 0.43
43 35 0.51
44 2 0.03
ACGTcount: A:0.28, C:0.25, G:0.17, T:0.30
Consensus pattern (42 bp):
ATGCCATATGCCAGATATGGTCTTACACGTAATCTCGTATCG
Found at i:10200885 original size:38 final size:38
Alignment explanation
Indices: 10200834--10200910 Score: 145
Period size: 38 Copynumber: 2.0 Consensus size: 38
10200824 TGGTAAGTTA
10200834 AATTCTAAATTATACGAACTTACGAAGATTAAATGCTT
1 AATTCTAAATTATACGAACTTACGAAGATTAAATGCTT
*
10200872 AATTCTAAATTATACGAACTTACTAAGATTAAATGCTT
1 AATTCTAAATTATACGAACTTACGAAGATTAAATGCTT
10200910 A
1 A
10200911 CTCTGTGTTA
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
38 38 1.00
ACGTcount: A:0.43, C:0.13, G:0.09, T:0.35
Consensus pattern (38 bp):
AATTCTAAATTATACGAACTTACGAAGATTAAATGCTT
Found at i:10201855 original size:16 final size:16
Alignment explanation
Indices: 10201834--10201868 Score: 70
Period size: 16 Copynumber: 2.2 Consensus size: 16
10201824 TTTTATCAAA
10201834 GTCTAGAGGCAAAATG
1 GTCTAGAGGCAAAATG
10201850 GTCTAGAGGCAAAATG
1 GTCTAGAGGCAAAATG
10201866 GTC
1 GTC
10201869 GTTTTGCCAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.34, C:0.14, G:0.31, T:0.20
Consensus pattern (16 bp):
GTCTAGAGGCAAAATG
Found at i:10202281 original size:46 final size:45
Alignment explanation
Indices: 10202223--10202533 Score: 150
Period size: 46 Copynumber: 6.6 Consensus size: 45
10202213 TATGTTTGCT
*
10202223 AGTGTAAAACATGTCTGGGACATGCATCGGCCACATTATGAGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCC-CATTATGAGAGCC
* * * *
10202269 AGTGTAAGACATGTCTGGGACATGCAACAGCCTCGAGATAT-ACAAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCC-C-A-TTATGA-GAGCC
* * * * * *
10202317 AGCGTAAGATATGTCTGAGACATGCGTCGG--CATTGAGACGAGAGCT
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCCATT---ATGAGAGCC
* * * * *
10202363 AGTGTAAGACATGTCTGGGACATGCATCAGCCTTGAGATAT-ACAAGCT
1 AGTGTAAGACATGTCTGGGACATGCATCGGCC--CA-TTATGA-GAGCC
* * * * * * *
10202411 AGTGTAAGACCTGTCTAGGACATGGCTTCAG--C-TTGTTGTGTGCC
1 AGTGTAAGACATGTCTGGGACAT-GCATCGGCCCATT-ATGAGAGCC
* * *
10202455 AGTGTAAGACCTGTCTGGGACATGGCATCGACACCAATAGATGAGAGCC
1 AGTGTAAGACATGTCTGGGACAT-GCATCGGC-CC-AT-TATGAGAGCC
* *
10202504 AGTGTAAGACCTATCTGGGACATGGCATCG
1 AGTGTAAGACATGTCTGGGACAT-GCATCG
10202534 ATCTCGATAT
Statistics
Matches: 199, Mismatches: 44, Indels: 41
0.70 0.15 0.14
Matches are distributed among these distances:
43 2 0.01
44 31 0.16
45 1 0.01
46 59 0.30
47 5 0.03
48 57 0.29
49 42 0.21
50 1 0.01
51 1 0.01
ACGTcount: A:0.29, C:0.21, G:0.28, T:0.23
Consensus pattern (45 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCCCATTATGAGAGCC
Found at i:10202332 original size:48 final size:48
Alignment explanation
Indices: 10202223--10202434 Score: 193
Period size: 46 Copynumber: 4.5 Consensus size: 48
10202213 TATGTTTGCT
* * * *
10202223 AGTGTAAAACATGTCTGGGACATGCATCGGCC---ACATTATGA-GAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCAGCCTTGAGA-TAT-ACAAGCC
* *
10202269 AGTGTAAGACATGTCTGGGACATGCAACAGCCTCGAGATATACAAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCAGCCTTGAGATATACAAGCC
* * * * * * ** * *
10202317 AGCGTAAGATATGTCTGAGACATGCGTCGGCATTGAGA-CGA-GAGCT
1 AGTGTAAGACATGTCTGGGACATGCATCAGCCTTGAGATATACAAGCC
*
10202363 AGTGTAAGACATGTCTGGGACATGCATCAGCCTTGAGATATACAAGCT
1 AGTGTAAGACATGTCTGGGACATGCATCAGCCTTGAGATATACAAGCC
* *
10202411 AGTGTAAGACCTGTCTAGGACATG
1 AGTGTAAGACATGTCTGGGACATG
10202435 GCTTCAGCTT
Statistics
Matches: 132, Mismatches: 28, Indels: 10
0.78 0.16 0.06
Matches are distributed among these distances:
46 64 0.48
47 3 0.02
48 63 0.48
49 2 0.02
ACGTcount: A:0.31, C:0.20, G:0.27, T:0.22
Consensus pattern (48 bp):
AGTGTAAGACATGTCTGGGACATGCATCAGCCTTGAGATATACAAGCC
Found at i:10202426 original size:94 final size:94
Alignment explanation
Indices: 10202262--10202434 Score: 267
Period size: 94 Copynumber: 1.8 Consensus size: 94
10202252 GCCACATTAT
*
10202262 GAGAGCCAGTGTAAGACATGTCTGGGACATGCAACAGCCTCGAGATATACAAGCCAGCGTAAGAT
1 GAGAGCCAGTGTAAGACATGTCTGGGACATGCAACAGCCTCGAGATATACAAGCCAGCGTAAGAC
10202327 ATGTCT-GAGACATGCGTCGGCATTGAGAC
66 ATGTCTAG-GACATGCGTCGGCATTGAGAC
* * * * *
10202356 GAGAGCTAGTGTAAGACATGTCTGGGACATGCATCAGCCTTGAGATATACAAGCTAGTGTAAGAC
1 GAGAGCCAGTGTAAGACATGTCTGGGACATGCAACAGCCTCGAGATATACAAGCCAGCGTAAGAC
*
10202421 CTGTCTAGGACATG
66 ATGTCTAGGACATG
10202435 GCTTCAGCTT
Statistics
Matches: 71, Mismatches: 7, Indels: 2
0.89 0.09 0.03
Matches are distributed among these distances:
94 70 0.99
95 1 0.01
ACGTcount: A:0.31, C:0.20, G:0.28, T:0.21
Consensus pattern (94 bp):
GAGAGCCAGTGTAAGACATGTCTGGGACATGCAACAGCCTCGAGATATACAAGCCAGCGTAAGAC
ATGTCTAGGACATGCGTCGGCATTGAGAC
Found at i:10202514 original size:49 final size:48
Alignment explanation
Indices: 10202452--10202584 Score: 167
Period size: 49 Copynumber: 2.7 Consensus size: 48
10202442 CTTGTTGTGT
* * *
10202452 GCCAGTGTAAGACCTGTCTGGGACATGGCATCGACACCAATAGATGAGA
1 GCCAGTGTAAGACCTATCTGGGACATGGCATCGAC-CCAATAGACGAAA
* * *
10202501 GCCAGTGTAAGACCTATCTGGGACATGGCATCGATCTCGATATACGAAA
1 GCCAGTGTAAGACCTATCTGGGACATGGCATCGA-CCCAATAGACGAAA
** *
10202550 GTTAGTGTAAGACCTATCTGGGACGTGGCATCGAC
1 GCCAGTGTAAGACCTATCTGGGACATGGCATCGAC
10202585 TTTGATGTGC
Statistics
Matches: 74, Mismatches: 9, Indels: 3
0.86 0.10 0.03
Matches are distributed among these distances:
48 1 0.01
49 72 0.97
50 1 0.01
ACGTcount: A:0.29, C:0.22, G:0.28, T:0.22
Consensus pattern (48 bp):
GCCAGTGTAAGACCTATCTGGGACATGGCATCGACCCAATAGACGAAA
Found at i:10215576 original size:46 final size:46
Alignment explanation
Indices: 10215523--10215736 Score: 207
Period size: 46 Copynumber: 4.6 Consensus size: 46
10215513 TATGTGTGCT
* ** *
10215523 AGTGTAAGACATGTCTGGCACATGCATCAGCCA-CATTATGAGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATC-GCCATCAAGACGAGAGCC
* * ** *
10215569 AGTGTAAGACATGTCTGGGACATGCAACGGCC-TCGAGATATACAAGCC
1 AGTGTAAGACATGTCTGGGACATGCATC-GCCATCAAGA-CGA-GAGCC
** * * *
10215617 AGTGTAAGACATGTCTGGGACATGTGTCGGCATTAAGACGAGAGCT
1 AGTGTAAGACATGTCTGGGACATGCATCGCCATCAAGACGAGAGCC
** * * *
10215663 AGTGTAAGACATGTCTGGGACATGTGTCGGCATTAAGACGAGAGCT
1 AGTGTAAGACATGTCTGGGACATGCATCGCCATCAAGACGAGAGCC
10215709 AGTGTAAGACATGTCTGGGACATGCATC
1 AGTGTAAGACATGTCTGGGACATGCATC
10215737 AGCCTCGAGA
Statistics
Matches: 143, Mismatches: 21, Indels: 8
0.83 0.12 0.05
Matches are distributed among these distances:
46 106 0.74
47 4 0.03
48 33 0.23
ACGTcount: A:0.29, C:0.19, G:0.29, T:0.22
Consensus pattern (46 bp):
AGTGTAAGACATGTCTGGGACATGCATCGCCATCAAGACGAGAGCC
Found at i:10215979 original size:22 final size:22
Alignment explanation
Indices: 10215951--10216016 Score: 105
Period size: 22 Copynumber: 3.0 Consensus size: 22
10215941 TAGCCAGTGT
* *
10215951 AAGACCACGTTTGGGACATGGC
1 AAGACCATGTCTGGGACATGGC
*
10215973 AAGACCATGTCTAGGACATGGC
1 AAGACCATGTCTGGGACATGGC
10215995 AAGACCATGTCTGGGACATGGC
1 AAGACCATGTCTGGGACATGGC
10216017 GTCGGCACCT
Statistics
Matches: 40, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 40 1.00
ACGTcount: A:0.29, C:0.23, G:0.30, T:0.18
Consensus pattern (22 bp):
AAGACCATGTCTGGGACATGGC
Found at i:10224450 original size:55 final size:54
Alignment explanation
Indices: 10224314--10224509 Score: 182
Period size: 55 Copynumber: 3.6 Consensus size: 54
10224304 TTCCTTTTTA
* * * * * * *
10224314 AACTTACCATTTCCATGTCATGGCATGGTCTTACGTG-GTATCCTTGCCTTAT-G
1 AACTTACCAATGCCATGCCTTGACATGGTCTTACATGAG-ATCCTTGCCTTGTAG
* * * *
10224367 AACTCACCATTGCCATGCCTTGGA-ATGGTCTTACATGGGATCTTTGCCTTGTAG
1 AACTTACCAATGCCATGCCTT-GACATGGTCTTACATGAGATCCTTGCCTTGTAG
** * **
10224421 TAGTTTATCAATGCCATGCCTTGACATGGTCTTACATGATTTCCTTGCCTTGTAG
1 -AACTTACCAATGCCATGCCTTGACATGGTCTTACATGAGATCCTTGCCTTGTAG
* *
10224476 AACTTACCGATGCCATGCCTTGGCATGGTCTTAC
1 AACTTACCAATGCCATGCCTTGACATGGTCTTAC
10224510 TTGGTATCCT
Statistics
Matches: 116, Mismatches: 22, Indels: 9
0.79 0.15 0.06
Matches are distributed among these distances:
53 40 0.34
54 34 0.29
55 42 0.36
ACGTcount: A:0.20, C:0.24, G:0.20, T:0.36
Consensus pattern (54 bp):
AACTTACCAATGCCATGCCTTGACATGGTCTTACATGAGATCCTTGCCTTGTAG
Found at i:10224520 original size:54 final size:53
Alignment explanation
Indices: 10224314--10224520 Score: 218
Period size: 53 Copynumber: 3.8 Consensus size: 53
10224304 TTCCTTTTTA
* * * * *
10224314 AACTTACCATTTCCATGTCATGGCATGGTCTTACGTGGTATCCTTGCCTTAT-G
1 AACTTACCA-TGCCATGCCTTGGCATGGTCTTACATGGTATCCTTGCCTTGTAG
* * * *
10224367 AACTCACCATTGCCATGCCTTGGAATGGTCTTACATGGGATCTTTGCCTTGTAG
1 AACTTACCA-TGCCATGCCTTGGCATGGTCTTACATGGTATCCTTGCCTTGTAG
** * * * *
10224421 TAGTTTATCAATGCCATGCCTTGACATGGTCTTACATGATTTCCTTGCCTTGTAG
1 -AACTTA-CCATGCCATGCCTTGGCATGGTCTTACATGGTATCCTTGCCTTGTAG
*
10224476 AACTTACCGATGCCATGCCTTGGCATGGTCTTACTTGGTATCCTT
1 AACTTACC-ATGCCATGCCTTGGCATGGTCTTACATGGTATCCTT
10224521 AAACCCTAAT
Statistics
Matches: 124, Mismatches: 26, Indels: 7
0.79 0.17 0.04
Matches are distributed among these distances:
53 44 0.35
54 37 0.30
55 41 0.33
56 2 0.02
ACGTcount: A:0.19, C:0.24, G:0.20, T:0.37
Consensus pattern (53 bp):
AACTTACCATGCCATGCCTTGGCATGGTCTTACATGGTATCCTTGCCTTGTAG
Found at i:10232004 original size:53 final size:52
Alignment explanation
Indices: 10231815--10232010 Score: 162
Period size: 53 Copynumber: 3.7 Consensus size: 52
10231805 TTTCCTTTTT
* * * * *
10231815 GAACTTACCATTTCCATGTCTTGACATGGTCTTACGTGGTATCCTTG-CTTTA
1 GAACTTACCAATGCCATGCCTTGACATGGTCTTACGTGAT-TTCTTGCCTTTA
* * * *** *
10231867 TGAACTCACCATTGTCATGCCTTGGTGTGGTCTTACGTGGGATCT-TTGCCTTATA
1 -GAACTTACCAATGCCATGCCTTGACATGGTCTTACGT--GATTTCTTGCCTT-TA
** * *
10231922 GTAGTTTATCAATGCCATGCCTTGACATGGTCTTACATGATTTCTTGCCTTGTA
1 G-AACTTACCAATGCCATGCCTTGACATGGTCTTACGTGATTTCTTGCCTT-TA
*
10231976 GAACTTACCAATGCCATGCCTTGGCATGGTCTTAC
1 GAACTTACCAATGCCATGCCTTGACATGGTCTTAC
10232011 TTGGTATCCT
Statistics
Matches: 111, Mismatches: 26, Indels: 12
0.74 0.17 0.08
Matches are distributed among these distances:
53 67 0.60
54 14 0.13
55 30 0.27
ACGTcount: A:0.19, C:0.23, G:0.20, T:0.38
Consensus pattern (52 bp):
GAACTTACCAATGCCATGCCTTGACATGGTCTTACGTGATTTCTTGCCTTTA
Found at i:10237192 original size:23 final size:23
Alignment explanation
Indices: 10237166--10237220 Score: 92
Period size: 23 Copynumber: 2.4 Consensus size: 23
10237156 CCAGGGACAC
*
10237166 GGGCGTGTGCATTGCCTTTACAA
1 GGGCGTGTGCATTGCCTCTACAA
*
10237189 GGGCGTGTGCATTGCCTCTACAC
1 GGGCGTGTGCATTGCCTCTACAA
10237212 GGGCGTGTG
1 GGGCGTGTG
10237221 AGGCTTAACT
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
23 30 1.00
ACGTcount: A:0.13, C:0.24, G:0.36, T:0.27
Consensus pattern (23 bp):
GGGCGTGTGCATTGCCTCTACAA
Found at i:10250051 original size:31 final size:31
Alignment explanation
Indices: 10250013--10250076 Score: 110
Period size: 31 Copynumber: 2.1 Consensus size: 31
10250003 CCTTTTCATA
10250013 TTTCATATTTCATAACACTGGGCCGAAGCCT
1 TTTCATATTTCATAACACTGGGCCGAAGCCT
**
10250044 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTTCATAACACTGGGCCGAAGCCT
10250075 TT
1 TT
10250077 ACTGTAAACG
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.23, C:0.23, G:0.16, T:0.38
Consensus pattern (31 bp):
TTTCATATTTCATAACACTGGGCCGAAGCCT
Found at i:10250312 original size:25 final size:24
Alignment explanation
Indices: 10250270--10250541 Score: 395
Period size: 25 Copynumber: 11.0 Consensus size: 24
10250260 GCTTTATCAT
*
10250270 ATAACTGGAGGCCT-AGCCTCTTTT-
1 ATAACTGG-GGCATAAGCC-CTTTTC
* *
10250294 AGTAACTGGGGCAAAAGCCCTTTTT
1 A-TAACTGGGGCATAAGCCCTTTTC
10250319 ATAACTGGGGCATAAGCCCTTTATC
1 ATAACTGGGGCATAAGCCCTTT-TC
*
10250344 ATAACTGGGGCATAAGCCCTTCATC
1 ATAACTGGGGCATAAGCCCTT-TTC
10250369 ATAACTGGGGCATAAGCCCTTTTTC
1 ATAACTGGGGCATAAGCCC-TTTTC
10250394 ATAACTGGGGCATAAGCCCTTTATC
1 ATAACTGGGGCATAAGCCCTTT-TC
10250419 ATAACTGGGGCATAAGCCCTTTTTC
1 ATAACTGGGGCATAAGCCC-TTTTC
10250444 ATAACTGGGGCATAAGCCCTTTATC
1 ATAACTGGGGCATAAGCCCTTT-TC
10250469 ATAACTGGGGCATAAGCCCTTTATC
1 ATAACTGGGGCATAAGCCCTTT-TC
10250494 ATAACTGGGGCATAAGCCCTTTATC
1 ATAACTGGGGCATAAGCCCTTT-TC
10250519 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
10250542 GCACTTCCTC
Statistics
Matches: 233, Mismatches: 6, Indels: 18
0.91 0.02 0.07
Matches are distributed among these distances:
24 36 0.15
25 192 0.82
26 5 0.02
ACGTcount: A:0.26, C:0.24, G:0.21, T:0.29
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTC
Found at i:10250387 original size:50 final size:50
Alignment explanation
Indices: 10250296--10250540 Score: 438
Period size: 50 Copynumber: 4.9 Consensus size: 50
10250286 CCTCTTTTAG
* *
10250296 TAACTGGGGCAAAAGCCCTTT-TTATAACTGGGGCATAAGCCCTTTATCA
1 TAACTGGGGCATAAGCCCTTTATCATAACTGGGGCATAAGCCCTTTATCA
* *
10250345 TAACTGGGGCATAAGCCCTTCATCATAACTGGGGCATAAGCCCTTTTTCA
1 TAACTGGGGCATAAGCCCTTTATCATAACTGGGGCATAAGCCCTTTATCA
*
10250395 TAACTGGGGCATAAGCCCTTTATCATAACTGGGGCATAAGCCCTTTTTCA
1 TAACTGGGGCATAAGCCCTTTATCATAACTGGGGCATAAGCCCTTTATCA
10250445 TAACTGGGGCATAAGCCCTTTATCATAACTGGGGCATAAGCCCTTTATCA
1 TAACTGGGGCATAAGCCCTTTATCATAACTGGGGCATAAGCCCTTTATCA
10250495 TAACTGGGGCATAAGCCCTTTATCATAACTGGGGCATAAGCCCTTT
1 TAACTGGGGCATAAGCCCTTTATCATAACTGGGGCATAAGCCCTTT
10250541 TGCACTTCCT
Statistics
Matches: 189, Mismatches: 6, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
49 19 0.10
50 170 0.90
ACGTcount: A:0.27, C:0.24, G:0.20, T:0.29
Consensus pattern (50 bp):
TAACTGGGGCATAAGCCCTTTATCATAACTGGGGCATAAGCCCTTTATCA
Found at i:10250423 original size:75 final size:75
Alignment explanation
Indices: 10250296--10250541 Score: 449
Period size: 75 Copynumber: 3.3 Consensus size: 75
10250286 CCTCTTTTAG
*
10250296 TAACTGGGGCAAAAGCCCTTTTT-ATAACTGGGGCATAAGCCCTTTATCATAACTGGGGCATAAG
1 TAACTGGGGCATAAGCCCTTTTTCATAACTGGGGCATAAGCCCTTTATCATAACTGGGGCATAAG
*
10250360 CCCTTCATCA
66 CCCTTTATCA
10250370 TAACTGGGGCATAAGCCCTTTTTCATAACTGGGGCATAAGCCCTTTATCATAACTGGGGCATAAG
1 TAACTGGGGCATAAGCCCTTTTTCATAACTGGGGCATAAGCCCTTTATCATAACTGGGGCATAAG
*
10250435 CCCTTTTTCA
66 CCCTTTATCA
*
10250445 TAACTGGGGCATAAGCCCTTTATCATAACTGGGGCATAAGCCCTTTATCATAACTGGGGCATAAG
1 TAACTGGGGCATAAGCCCTTTTTCATAACTGGGGCATAAGCCCTTTATCATAACTGGGGCATAAG
10250510 CCCTTTATCA
66 CCCTTTATCA
10250520 TAACTGGGGCATAAGCCCTTTT
1 TAACTGGGGCATAAGCCCTTTT
10250542 GCACTTCCTC
Statistics
Matches: 165, Mismatches: 6, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
74 22 0.13
75 143 0.87
ACGTcount: A:0.27, C:0.24, G:0.20, T:0.29
Consensus pattern (75 bp):
TAACTGGGGCATAAGCCCTTTTTCATAACTGGGGCATAAGCCCTTTATCATAACTGGGGCATAAG
CCCTTTATCA
Found at i:10250616 original size:20 final size:20
Alignment explanation
Indices: 10250591--10250657 Score: 116
Period size: 20 Copynumber: 3.4 Consensus size: 20
10250581 TTATGAATAC
10250591 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
10250611 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
10250631 GTCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
10250651 ACCATGT
1 ATCATGT
10250658 TTATCAAAAT
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 44 1.00
ACGTcount: A:0.33, C:0.21, G:0.12, T:0.34
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:10250622 original size:11 final size:11
Alignment explanation
Indices: 10250591--10250646 Score: 57
Period size: 11 Copynumber: 5.5 Consensus size: 11
10250581 TTATGAATAC
10250591 ATCATGTGCAT
1 ATCATGTGCAT
*
10250602 ATCA--TACAT
1 ATCATGTGCAT
10250611 ATCATGTGCAT
1 ATCATGTGCAT
*
10250622 ATCA--TACAT
1 ATCATGTGCAT
*
10250631 GTCATGTGCAT
1 ATCATGTGCAT
10250642 ATCAT
1 ATCAT
10250647 ACATACCATG
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
9 15 0.43
11 20 0.57
ACGTcount: A:0.32, C:0.20, G:0.12, T:0.36
Consensus pattern (11 bp):
ATCATGTGCAT
Found at i:10250726 original size:25 final size:25
Alignment explanation
Indices: 10250694--10250741 Score: 78
Period size: 25 Copynumber: 1.9 Consensus size: 25
10250684 ATATATAAAC
* *
10250694 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAATGGTCATTTTTA
10250719 CCTAGGGGCAAAATGGTCATTTT
1 CCTAGGGGCAAAATGGTCATTTT
10250742 CATGTTATAA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.25, C:0.15, G:0.25, T:0.35
Consensus pattern (25 bp):
CCTAGGGGCAAAATGGTCATTTTTA
Found at i:10251991 original size:27 final size:27
Alignment explanation
Indices: 10251900--10251982 Score: 114
Period size: 27 Copynumber: 3.1 Consensus size: 27
10251890 GGGCATATTC
* *
10251900 GTCATTTTACCATACAGGGG-TATTACG
1 GTCACTTTACCCTACAGGGGCT-TTACG
*
10251927 GTCACTTTACCCTACAAGGGCTTTACG
1 GTCACTTTACCCTACAGGGGCTTTACG
*
10251954 ATCACTTTACCCTACAGGGGCTTTACG
1 GTCACTTTACCCTACAGGGGCTTTACG
10251981 GT
1 GT
10251983 TTTTTTACCT
Statistics
Matches: 49, Mismatches: 6, Indels: 2
0.86 0.11 0.04
Matches are distributed among these distances:
27 48 0.98
28 1 0.02
ACGTcount: A:0.23, C:0.25, G:0.20, T:0.31
Consensus pattern (27 bp):
GTCACTTTACCCTACAGGGGCTTTACG
Found at i:10252158 original size:27 final size:27
Alignment explanation
Indices: 10252128--10252313 Score: 164
Period size: 27 Copynumber: 6.9 Consensus size: 27
10252118 GTAACTTTGT
*
10252128 AAATTAGGGGTATTTTGGTAATTATAC
1 AAATTAGGGGTATTTTGGTAATTTTAC
* *
10252155 AAATT-GAGGGTATTTCGGTAATTTCAC
1 AAATTAG-GGGTATTTTGGTAATTTTAC
** **
10252182 AAACCAATGGTATTTTGGTAATTTTAC
1 AAATTAGGGGTATTTTGGTAATTTTAC
*
10252209 AAACTAGGGGTATTTTGGTAATTTTAC
1 AAATTAGGGGTATTTTGGTAATTTTAC
10252236 AAATT-GAGGGTATTTCT-GTAATTTTAC
1 AAATTAG-GGGTATTT-TGGTAATTTTAC
** * * *
10252263 AAACCAAGGGTATTTTAGCAATTTTAC
1 AAATTAGGGGTATTTTGGTAATTTTAC
* * * *
10252290 AGACTA-GGGTATTCTAGTAATTTT
1 AAATTAGGGGTATTTTGGTAATTTT
10252314 GTAAATCGAG
Statistics
Matches: 132, Mismatches: 21, Indels: 13
0.80 0.13 0.08
Matches are distributed among these distances:
26 19 0.14
27 112 0.85
28 1 0.01
ACGTcount: A:0.32, C:0.09, G:0.19, T:0.40
Consensus pattern (27 bp):
AAATTAGGGGTATTTTGGTAATTTTAC
Found at i:10252225 original size:81 final size:81
Alignment explanation
Indices: 10252132--10252311 Score: 272
Period size: 81 Copynumber: 2.2 Consensus size: 81
10252122 CTTTGTAAAT
*
10252132 TAGGGGTATTTTGGTAATTATACAAATTGAGGGTATTTCGGTAATTTCACAAACCAATGGTATTT
1 TAGGGGTATTTTGGTAATTATACAAATTGAGGGTATTTCGGTAATTTCACAAACCAAGGGTATTT
* *
10252197 TGGTAATTTTACAAAC
66 TAGCAATTTTACAAAC
* * *
10252213 TAGGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCTGTAATTTTACAAACCAAGGGTATTT
1 TAGGGGTATTTTGGTAATTATACAAATTGAGGGTATTTCGGTAATTTCACAAACCAAGGGTATTT
*
10252278 TAGCAATTTTACAGAC
66 TAGCAATTTTACAAAC
* *
10252294 TA-GGGTATTCTAGTAATT
1 TAGGGGTATTTTGGTAATT
10252312 TTGTAAATCG
Statistics
Matches: 90, Mismatches: 9, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
80 14 0.16
81 76 0.84
ACGTcount: A:0.31, C:0.09, G:0.20, T:0.39
Consensus pattern (81 bp):
TAGGGGTATTTTGGTAATTATACAAATTGAGGGTATTTCGGTAATTTCACAAACCAAGGGTATTT
TAGCAATTTTACAAAC
Found at i:10252248 original size:54 final size:53
Alignment explanation
Indices: 10252135--10252313 Score: 182
Period size: 54 Copynumber: 3.3 Consensus size: 53
10252125 TGTAAATTAG
* * * * *
10252135 GGGTATTTTGGTAATTATACAAA-TTGAGGGTATTTCGGTAATTTCACAAACCAA
1 GGGTATTTTGGTAATTTTACAAACTAG-GGGTATTTTGGTAATTTTACAAA-CTA
* *
10252189 TGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTACAAATTGA
1 GGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTACAAACT-A
* * * * *
10252243 GGGTATTTCT-GTAATTTTACAAACCAAGGGTATTTTAGCAATTTTACAGACTA
1 GGGTATTT-TGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTACAAACTA
* *
10252296 GGGTATTCTAGTAATTTT
1 GGGTATTTTGGTAATTTT
10252314 GTAAATCGAG
Statistics
Matches: 106, Mismatches: 15, Indels: 9
0.82 0.12 0.07
Matches are distributed among these distances:
52 1 0.01
53 16 0.15
54 86 0.81
55 3 0.03
ACGTcount: A:0.31, C:0.09, G:0.20, T:0.40
Consensus pattern (53 bp):
GGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTACAAACTA
Found at i:10252335 original size:27 final size:27
Alignment explanation
Indices: 10252305--10252489 Score: 185
Period size: 27 Copynumber: 6.9 Consensus size: 27
10252295 AGGGTATTCT
*
10252305 AGTAATTTTGTAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* * *
10252332 AGTAATTTTATAAATCAAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* *
10252359 -GATACTTCTGTAAGTCGAGGGTAAAAC
1 AG-TAATTCTGTAAATCGAGGGTAAAAC
*
10252386 AGTAATTCTGTAAATCAAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* * *
10252413 GGTAATTATGTAAATCG-GGGTTAAAAT
1 AGTAATTCTGTAAATCGAGGG-TAAAAC
* * * * *
10252440 GGTAATTATGTTAATCGGGGGTAAAAT
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* *
10252467 GGTAATTCTGTAAATCGGGGGTA
1 AGTAATTCTGTAAATCGAGGGTA
10252490 CTTTGGTAAT
Statistics
Matches: 137, Mismatches: 17, Indels: 8
0.85 0.10 0.05
Matches are distributed among these distances:
26 4 0.03
27 129 0.94
28 4 0.03
ACGTcount: A:0.38, C:0.08, G:0.24, T:0.30
Consensus pattern (27 bp):
AGTAATTCTGTAAATCGAGGGTAAAAC
Found at i:10252351 original size:80 final size:81
Alignment explanation
Indices: 10252132--10252354 Score: 223
Period size: 81 Copynumber: 2.8 Consensus size: 81
10252122 CTTTGTAAAT
* * * * *** * * *
10252132 TAGGGGTATTTTGGTAATTATACAAATTGAGGGTATTTCGGTAATTTCACAAACCAATGGTATTT
1 TAGGGGTATTCTAGTAATTTTACAAATCGAGGGTAAAACAGTAATTTTACAAACCAAGGGTATTT
* *
10252197 TGGTAATTTTACAAAC
66 TAGCAATTTTACAAAC
* * * *** *
10252213 TAGGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCTGTAATTTTACAAACCAAGGGTATTT
1 TAGGGGTATTCTAGTAATTTTACAAATCGAGGGTAAAACAGTAATTTTACAAACCAAGGGTATTT
*
10252278 TAGCAATTTTACAGAC
66 TAGCAATTTTACAAAC
** * *
10252294 TA-GGGTATTCTAGTAATTTTGTAAATCGAGGGTAAAACAGTAATTTTATAAATCAAGGGTA
1 TAGGGGTATTCTAGTAATTTTACAAATCGAGGGTAAAACAGTAATTTTACAAACCAAGGGTA
10252355 AAACGATACT
Statistics
Matches: 124, Mismatches: 18, Indels: 1
0.87 0.13 0.01
Matches are distributed among these distances:
80 48 0.39
81 76 0.61
ACGTcount: A:0.33, C:0.09, G:0.20, T:0.38
Consensus pattern (81 bp):
TAGGGGTATTCTAGTAATTTTACAAATCGAGGGTAAAACAGTAATTTTACAAACCAAGGGTATTT
TAGCAATTTTACAAAC
Found at i:10252425 original size:54 final size:54
Alignment explanation
Indices: 10252306--10252489 Score: 217
Period size: 54 Copynumber: 3.4 Consensus size: 54
10252296 GGGTATTCTA
* * *
10252306 GTAATTTTGTAAATCGAGGGTAAAACAGTAATTTTATAAATCAAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACAGTAATTATGTAAATCAAGGGTAAAACG
* * * *
10252360 ATACTTCTGTAAGTCGAGGGTAAAACAGTAATTCTGTAAATCAAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACAGTAATTATGTAAATCAAGGGTAAAACG
* ** * ** *
10252414 GTAATTATGTAAATCG-GGGTTAAAATGGTAATTATGTTAATCGGGGGTAAAATG
1 GTAATTCTGTAAATCGAGGG-TAAAACAGTAATTATGTAAATCAAGGGTAAAACG
*
10252468 GTAATTCTGTAAATCGGGGGTA
1 GTAATTCTGTAAATCGAGGGTA
10252490 CTTTGGTAAT
Statistics
Matches: 110, Mismatches: 18, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
53 3 0.03
54 104 0.95
55 3 0.03
ACGTcount: A:0.38, C:0.08, G:0.24, T:0.30
Consensus pattern (54 bp):
GTAATTCTGTAAATCGAGGGTAAAACAGTAATTATGTAAATCAAGGGTAAAACG
Found at i:10252489 original size:81 final size:81
Alignment explanation
Indices: 10252305--10252489 Score: 212
Period size: 81 Copynumber: 2.3 Consensus size: 81
10252295 AGGGTATTCT
* * * *
10252305 AGTAATTTTGTAAATCGAGGGTAAAACAGTAATTTTATAAATCAAGGGTAAAACGATACTTCTGT
1 AGTAATTCTGTAAATCGAGGGTAAAACAGTAATTATATAAATCAAGGGTAAAACGATAATTATGT
10252370 AAGTCGAGGGTAAAAC
66 AAGTCGAGGGTAAAAC
* * * * * *
10252386 AGTAATTCTGTAAATCAAGGGTAAAACGGTAATTATGTAAATC-GGGGTTAAAATGGTAATTATG
1 AGTAATTCTGTAAATCGAGGGTAAAACAGTAATTATATAAATCAAGGG-TAAAACGATAATTATG
* *
10252450 TTAA-TCGGGGGTAAAAT
65 -TAAGTCGAGGGTAAAAC
* *
10252467 GGTAATTCTGTAAATCGGGGGTA
1 AGTAATTCTGTAAATCGAGGGTA
10252490 CTTTGGTAAT
Statistics
Matches: 87, Mismatches: 15, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
80 3 0.03
81 81 0.93
82 3 0.03
ACGTcount: A:0.38, C:0.08, G:0.24, T:0.30
Consensus pattern (81 bp):
AGTAATTCTGTAAATCGAGGGTAAAACAGTAATTATATAAATCAAGGGTAAAACGATAATTATGT
AAGTCGAGGGTAAAAC
Found at i:10252516 original size:27 final size:27
Alignment explanation
Indices: 10252495--10252584 Score: 119
Period size: 27 Copynumber: 3.3 Consensus size: 27
10252485 GGGTACTTTG
*
10252495 GTAATTTTACAAGTCGAAGGTATTTCA
1 GTAATTTTACAAATCGAAGGTATTTCA
*
10252522 GTAATTTTACAAATCGAGGGTATTTCA
1 GTAATTTTACAAATCGAAGGTATTTCA
* * *
10252549 GTATTTTTACAAA-CTAAGCGTATTTCG
1 GTAATTTTACAAATCGAAG-GTATTTCA
10252576 GTAATTTTA
1 GTAATTTTA
10252585 GTAAACTAAA
Statistics
Matches: 55, Mismatches: 7, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
26 3 0.05
27 52 0.95
ACGTcount: A:0.32, C:0.11, G:0.17, T:0.40
Consensus pattern (27 bp):
GTAATTTTACAAATCGAAGGTATTTCA
Found at i:10252536 original size:54 final size:54
Alignment explanation
Indices: 10252478--10252584 Score: 128
Period size: 54 Copynumber: 2.0 Consensus size: 54
10252468 GTAATTCTGT
* * *
10252478 AAATCGGGGGTACTTT-GGTAATTTTACAAGTCGAAG-GTATTTCAGTAATTTTAC
1 AAATCGAGGGTA-TTTCAGTAATTTTACAA-ACGAAGCGTATTTCAGTAATTTTAC
* * *
10252532 AAATCGAGGGTATTTCAGTATTTTTACAAACTAAGCGTATTTCGGTAATTTTA
1 AAATCGAGGGTATTTCAGTAATTTTACAAACGAAGCGTATTTCAGTAATTTTA
10252585 GTAAACTAAA
Statistics
Matches: 45, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
53 7 0.16
54 38 0.84
ACGTcount: A:0.31, C:0.11, G:0.20, T:0.38
Consensus pattern (54 bp):
AAATCGAGGGTATTTCAGTAATTTTACAAACGAAGCGTATTTCAGTAATTTTAC
Found at i:10252598 original size:27 final size:27
Alignment explanation
Indices: 10252495--10252599 Score: 90
Period size: 27 Copynumber: 3.9 Consensus size: 27
10252485 GGGTACTTTG
* *
10252495 GTAATTTTACAAGTCGAAG-GTATTTCA
1 GTAATTTTACAA-ACTAAGAGTATTTCA
* *
10252522 GTAATTTTACAAA-TCGAGGGTATTTCA
1 GTAATTTTACAAACT-AAGAGTATTTCA
* * *
10252549 GTATTTTTACAAACTAAGCGTATTTCG
1 GTAATTTTACAAACTAAGAGTATTTCA
*
10252576 GTAATTTTAGTAAACTAA-AGTATT
1 GTAATTTTA-CAAACTAAGAGTATT
10252600 CTAAACAGGG
Statistics
Matches: 64, Mismatches: 10, Indels: 8
0.78 0.12 0.10
Matches are distributed among these distances:
26 2 0.03
27 54 0.84
28 8 0.12
ACGTcount: A:0.34, C:0.10, G:0.16, T:0.39
Consensus pattern (27 bp):
GTAATTTTACAAACTAAGAGTATTTCA
Found at i:10255135 original size:21 final size:21
Alignment explanation
Indices: 10255111--10255153 Score: 77
Period size: 21 Copynumber: 2.0 Consensus size: 21
10255101 TACTACTTAT
*
10255111 TTTATAACTTTTACAAATAAG
1 TTTAAAACTTTTACAAATAAG
10255132 TTTAAAACTTTTACAAATAAG
1 TTTAAAACTTTTACAAATAAG
10255153 T
1 T
10255154 CCTTTTTGAC
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.44, C:0.09, G:0.05, T:0.42
Consensus pattern (21 bp):
TTTAAAACTTTTACAAATAAG
Found at i:10255899 original size:15 final size:14
Alignment explanation
Indices: 10255881--10255919 Score: 55
Period size: 13 Copynumber: 2.9 Consensus size: 14
10255871 TCAGCTGTGT
10255881 GTGACAAACGGCCAG
1 GTGAC-AACGGCCAG
10255896 GTGAC-ACGGCCAG
1 GTGACAACGGCCAG
10255909 GTGAC-ACGGCC
1 GTGACAACGGCC
10255920 GTGTGTCCCC
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
13 19 0.79
15 5 0.21
ACGTcount: A:0.26, C:0.31, G:0.36, T:0.08
Consensus pattern (14 bp):
GTGACAACGGCCAG
Found at i:10255906 original size:13 final size:13
Alignment explanation
Indices: 10255888--10255919 Score: 64
Period size: 13 Copynumber: 2.5 Consensus size: 13
10255878 TGTGTGACAA
10255888 ACGGCCAGGTGAC
1 ACGGCCAGGTGAC
10255901 ACGGCCAGGTGAC
1 ACGGCCAGGTGAC
10255914 ACGGCC
1 ACGGCC
10255920 GTGTGTCCCC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.22, C:0.34, G:0.38, T:0.06
Consensus pattern (13 bp):
ACGGCCAGGTGAC
Found at i:10259702 original size:22 final size:22
Alignment explanation
Indices: 10259674--10259718 Score: 90
Period size: 22 Copynumber: 2.0 Consensus size: 22
10259664 GAACACAGAG
10259674 AGAGAACATTCACAATAAGATA
1 AGAGAACATTCACAATAAGATA
10259696 AGAGAACATTCACAATAAGATA
1 AGAGAACATTCACAATAAGATA
10259718 A
1 A
10259719 AAGTTCATCA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.56, C:0.13, G:0.13, T:0.18
Consensus pattern (22 bp):
AGAGAACATTCACAATAAGATA
Found at i:10260630 original size:22 final size:20
Alignment explanation
Indices: 10260604--10260644 Score: 55
Period size: 22 Copynumber: 1.9 Consensus size: 20
10260594 ACTGTTAAAG
10260604 ATTTTAAGAGTTTCTATTGATT
1 ATTTTAAGAG-TTCT-TTGATT
*
10260626 ATTTTATGAGTTCTTTGAT
1 ATTTTAAGAGTTCTTTGAT
10260645 GTTTGAAGGT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 5 0.28
21 4 0.22
22 9 0.50
ACGTcount: A:0.24, C:0.05, G:0.15, T:0.56
Consensus pattern (20 bp):
ATTTTAAGAGTTCTTTGATT
Found at i:10261316 original size:29 final size:29
Alignment explanation
Indices: 10261274--10261347 Score: 121
Period size: 29 Copynumber: 2.6 Consensus size: 29
10261264 ATAAGTTGAG
*
10261274 TTGGCTTCGAGCCATGCATATCGGATGAT
1 TTGGCTTCGAGCCATGCATATCAGATGAT
*
10261303 TTGGCTTCTAGCCATGCATATCAGATGAT
1 TTGGCTTCGAGCCATGCATATCAGATGAT
*
10261332 TTGGCTTCGGGCCATG
1 TTGGCTTCGAGCCATG
10261348 ATAATTATTC
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
29 41 1.00
ACGTcount: A:0.19, C:0.22, G:0.27, T:0.32
Consensus pattern (29 bp):
TTGGCTTCGAGCCATGCATATCAGATGAT
Found at i:10268832 original size:27 final size:27
Alignment explanation
Indices: 10268775--10268980 Score: 181
Period size: 27 Copynumber: 7.7 Consensus size: 27
10268765 AAAATTAATT
* *
10268775 AAATTACTGAAATACCCT-AATTTGTA
1 AAATTACTAAAATACCCTCGATTTGTA
*
10268801 AAATTA-TCAAAATACCCCCGATTTGTA
1 AAATTACT-AAAATACCCTCGATTTGTA
*
10268828 AAATTACTGAAATACCCTCGATTTGTA
1 AAATTACTAAAATACCCTCGATTTGTA
** *
10268855 AAATTACCGAAATACCCTCGATTTGGA
1 AAATTACTAAAATACCCTCGATTTGTA
* *
10268882 AAATTACTAAAATACCCTTG-TAGTGTA
1 AAATTACTAAAATACCCTCGAT-TTGTA
** * *
10268909 AAATTACCGAAATACCCTTG-TAGTGTA
1 AAATTACTAAAATACCCTCGAT-TTGTA
* * *
10268936 AAATTACCAAAATACCCT-TATAGTGTA
1 AAATTACTAAAATACCCTCGAT-TTGTA
10268963 AAATTA-TAAAGATACCCT
1 AAATTACTAAA-ATACCCT
10268981 TGTAGTGTAA
Statistics
Matches: 157, Mismatches: 17, Indels: 11
0.85 0.09 0.06
Matches are distributed among these distances:
25 1 0.01
26 18 0.11
27 137 0.87
28 1 0.01
ACGTcount: A:0.41, C:0.18, G:0.10, T:0.31
Consensus pattern (27 bp):
AAATTACTAAAATACCCTCGATTTGTA
Found at i:10268895 original size:81 final size:80
Alignment explanation
Indices: 10268775--10269006 Score: 229
Period size: 81 Copynumber: 2.9 Consensus size: 80
10268765 AAAATTAATT
* * * *
10268775 AAATTACTGAAATACCCTAATTTGTAAAATTATCAAAATACCCCCG-ATTTGTAAAATTACTGAA
1 AAATTACCGAAATACCCTAATTTGGAAAATTATCAAAATACCCCCGTA-GTGTAAAATTACCGAA
*
10268839 ATACCCTCG-ATTTGTA
65 ATACCCTCGTA-GTGTA
* **
10268855 AAATTACCGAAATACCCTCGATTTGGAAAATTA-CTAAAATACCCTTGTAGTGTAAAATTACCGA
1 AAATTACCGAAATACCCT-AATTTGGAAAATTATC-AAAATACCCCCGTAGTGTAAAATTACCGA
*
10268919 AATACCCTTGTAGTGTA
64 AATACCCTCGTAGTGTA
* * * * ** * *
10268936 AAATTACCAAAATACCCTTATAGTGTAAAATTAT-AAAGATACCCTTGTAGTGTAAAACTACGGA
1 AAATTACCGAAATACCCTAAT-TTGGAAAATTATCAAA-ATACCCCCGTAGTGTAAAATTACCGA
10269000 AATACCC
64 AATACCC
10269007 CTATAGGGCA
Statistics
Matches: 130, Mismatches: 15, Indels: 13
0.82 0.09 0.08
Matches are distributed among these distances:
80 23 0.18
81 105 0.81
82 2 0.02
ACGTcount: A:0.41, C:0.19, G:0.11, T:0.30
Consensus pattern (80 bp):
AAATTACCGAAATACCCTAATTTGGAAAATTATCAAAATACCCCCGTAGTGTAAAATTACCGAAA
TACCCTCGTAGTGTA
Found at i:10268926 original size:54 final size:54
Alignment explanation
Indices: 10268775--10268968 Score: 223
Period size: 54 Copynumber: 3.6 Consensus size: 54
10268765 AAAATTAATT
* * * * * *
10268775 AAATTACTGAAATACCCTAAT-TTGTAAAATTATCAAAATACCCCCGATTTGTA
1 AAATTACTAAAATACCCTTATAGTGTAAAATTACCGAAATACCCTCGATTTGTA
* * * *
10268828 AAATTACTGAAATACCCTCGAT-TTGTAAAATTACCGAAATACCCTCGATTTGGA
1 AAATTACTAAAATACCCT-TATAGTGTAAAATTACCGAAATACCCTCGATTTGTA
* * *
10268882 AAATTACTAAAATACCCTTGTAGTGTAAAATTACCGAAATACCCTTG-TAGTGTA
1 AAATTACTAAAATACCCTTATAGTGTAAAATTACCGAAATACCCTCGAT-TTGTA
*
10268936 AAATTACCAAAATACCCTTATAGTGTAAAATTA
1 AAATTACTAAAATACCCTTATAGTGTAAAATTA
10268969 TAAAGATACC
Statistics
Matches: 124, Mismatches: 14, Indels: 5
0.87 0.10 0.03
Matches are distributed among these distances:
53 20 0.16
54 104 0.84
ACGTcount: A:0.41, C:0.18, G:0.10, T:0.31
Consensus pattern (54 bp):
AAATTACTAAAATACCCTTATAGTGTAAAATTACCGAAATACCCTCGATTTGTA
Found at i:10268978 original size:54 final size:54
Alignment explanation
Indices: 10268775--10269012 Score: 189
Period size: 54 Copynumber: 4.4 Consensus size: 54
10268765 AAAATTAATT
** * * * ** *
10268775 AAATTACTGAAATACCCTAAT-TTGTAAAATTATCAAAATACCCCCG-ATTTGTA
1 AAATTACCAAAATACCCTTATAGTGTAAAATTACCAAAATACCCTTGTA-GTGTA
** * * * * * *
10268828 AAATTACTGAAATACCCTCGAT-TTGTAAAATTACCGAAATACCCTCG-ATTTGGA
1 AAATTACCAAAATACCCT-TATAGTGTAAAATTACCAAAATACCCTTGTA-GTGTA
* * *
10268882 AAATTACTAAAATACCCTTGTAGTGTAAAATTACCGAAATACCCTTGTAGTGTA
1 AAATTACCAAAATACCCTTATAGTGTAAAATTACCAAAATACCCTTGTAGTGTA
*
10268936 AAATTACCAAAATACCCTTATAGTGTAAAATTA-TAAAGATACCCTTGTAGTGTA
1 AAATTACCAAAATACCCTTATAGTGTAAAATTACCAAA-ATACCCTTGTAGTGTA
* ** *
10268990 AAACTACGGAAATACCCCTATAG
1 AAATTACCAAAATACCCTTATAG
10269013 GGCAAAATGA
Statistics
Matches: 161, Mismatches: 20, Indels: 7
0.86 0.11 0.04
Matches are distributed among these distances:
53 21 0.13
54 139 0.86
55 1 0.01
ACGTcount: A:0.40, C:0.18, G:0.11, T:0.30
Consensus pattern (54 bp):
AAATTACCAAAATACCCTTATAGTGTAAAATTACCAAAATACCCTTGTAGTGTA
Found at i:10268981 original size:27 final size:27
Alignment explanation
Indices: 10268797--10269006 Score: 185
Period size: 27 Copynumber: 7.8 Consensus size: 27
10268787 TACCCTAATT
* ** *
10268797 TGTAAAATTATCAAAATACCCCCG-ATT
1 TGTAAAATTACCAAAATACCCTTGTA-G
** * *
10268824 TGTAAAATTACTGAAATACCCTCG-ATT
1 TGTAAAATTACCAAAATACCCTTGTA-G
* * *
10268851 TGTAAAATTACCGAAATACCCTCG-ATT
1 TGTAAAATTACCAAAATACCCTTGTA-G
* *
10268878 TGGAAAATTACTAAAATACCCTTGTAG
1 TGTAAAATTACCAAAATACCCTTGTAG
*
10268905 TGTAAAATTACCGAAATACCCTTGTAG
1 TGTAAAATTACCAAAATACCCTTGTAG
*
10268932 TGTAAAATTACCAAAATACCCTTATAG
1 TGTAAAATTACCAAAATACCCTTGTAG
*
10268959 TGTAAAATTA-TAAAGATACCCTTGTAG
1 TGTAAAATTACCAAA-ATACCCTTGTAG
* **
10268986 TGTAAAACTACGGAAATACCC
1 TGTAAAATTACCAAAATACCC
10269007 CTATAGGGCA
Statistics
Matches: 160, Mismatches: 20, Indels: 6
0.86 0.11 0.03
Matches are distributed among these distances:
26 3 0.02
27 154 0.96
28 3 0.02
ACGTcount: A:0.40, C:0.19, G:0.12, T:0.30
Consensus pattern (27 bp):
TGTAAAATTACCAAAATACCCTTGTAG
Found at i:10281060 original size:30 final size:30
Alignment explanation
Indices: 10281026--10281086 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
10281016 TCCTTAACTC
10281026 AAACTTTGGAAAAATTACAATTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
* * * * *
10281056 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
10281086 A
1 A
10281087 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACAATTTTGCCCCT
Found at i:10285421 original size:30 final size:30
Alignment explanation
Indices: 10285387--10285447 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
10285377 TCCTTAACTC
10285387 AAACTTTGGAAAAATTACAATTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
* * * * *
10285417 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
10285447 A
1 A
10285448 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACAATTTTGCCCCT
Found at i:10292007 original size:55 final size:53
Alignment explanation
Indices: 10291920--10292174 Score: 243
Period size: 55 Copynumber: 4.8 Consensus size: 53
10291910 ATTAGGGTTT
*
10291920 AAGGATACCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGC-ATTGGTAA-GTTTCTAAGGC
* * ** * *
10291975 AAGGAAATCATGTAAGACCATGTTAAGACATGGCATTGATAAGTTACTATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTT--TCTAAGGC
* * * *
10292030 AAAGG-TCCCATGTAAGACCATGCCAAGGCATAGCATTGGTGAG-TTCATAAGGC
1 -AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTTC-TAAGGC
* **
10292083 AAGGATACCATGTAAGACCATGTCAAGACATGGCAAAGGTAAGTTTC-AA---
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTTCTAAGGC
* * * * *
10292132 AAGGATACCACGTAAGAACATGACAAGTCATGGCAATGGTAAG
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAG
10292175 GTACCCGTGT
Statistics
Matches: 165, Mismatches: 29, Indels: 18
0.78 0.14 0.08
Matches are distributed among these distances:
49 38 0.23
52 7 0.04
53 40 0.24
54 11 0.07
55 65 0.39
56 4 0.02
ACGTcount: A:0.37, C:0.17, G:0.25, T:0.21
Consensus pattern (53 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTTCTAAGGC
Found at i:10292126 original size:108 final size:110
Alignment explanation
Indices: 10291927--10292127 Score: 300
Period size: 108 Copynumber: 1.8 Consensus size: 110
10291917 TTTAAGGATA
* *
10291927 CCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGCAAGGAAATCATGTAAGA
1 CCATGTAAGACCATGCCAAGGCATAGCAATTGGTAAGGTTTCTAAGGCAAGGAAACCATGTAAGA
* **
10291992 CCATGTTAAGACATGGCATTGATAAGTTACTATAAGGCAAAGGTC
66 CCATGTCAAGACATGGCAAAGATAAGTTACTATAAGGCAAAGGTC
* *
10292037 CCATGTAAGACCATGCCAAGGCATAGC-ATTGGTGA-G-TTCATAAGGCAAGGATACCATGTAAG
1 CCATGTAAGACCATGCCAAGGCATAGCAATTGGTAAGGTTTC-TAAGGCAAGGAAACCATGTAAG
*
10292099 ACCATGTCAAGACATGGCAAAGGTAAGTT
65 ACCATGTCAAGACATGGCAAAGATAAGTT
10292128 TCAAAAGGAT
Statistics
Matches: 82, Mismatches: 8, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
107 3 0.04
108 46 0.56
109 7 0.09
110 26 0.32
ACGTcount: A:0.35, C:0.17, G:0.25, T:0.22
Consensus pattern (110 bp):
CCATGTAAGACCATGCCAAGGCATAGCAATTGGTAAGGTTTCTAAGGCAAGGAAACCATGTAAGA
CCATGTCAAGACATGGCAAAGATAAGTTACTATAAGGCAAAGGTC
Found at i:10295123 original size:357 final size:357
Alignment explanation
Indices: 10294451--10295164 Score: 1279
Period size: 357 Copynumber: 2.0 Consensus size: 357
10294441 CGATGTCAGC
10294451 CAGGTCAGTGTCGAGCAACTAAGACAGGTTGTTTCCGATGTAGTGCACCAGACCATTTTATTCAG
1 CAGGTCAGTGTCGAGCAACTAAGACAGGTTGTTTCCGATGTAGTGCACCAGACCATTTTATTCAG
10294516 AAGTGTCCCGAGATGATTAAAAGGGAAGCAATACCGAGTGTAAGATCAGGCAAAGCTCCTGTCAG
66 AAGTGTCCCGAGATGATTAAAAGGGAAGCAATACCGAGTGTAAGATCAGGCAAAGCTCCTGTCAG
10294581 AGGTAGACCACTGAGAAATCTTGGAGCTGGGGCAAGTAATAGAGGTGCATCTAGAGATTCAGCAG
131 AGGTAGACCACTGAGAAATCTTGGAGCTGGGGCAAGTAATAGAGGTGCATCTAGAGATTCAGCAG
**
10294646 TGAGGCCAGATGTTAGAGCACCTGCAAGGACTTATGCTATCCGTGCTCGTGAAGAGGCATCCTCC
196 TGAGGCCAGATGTTAGAGCACCTGCAAGGACTTATGCTATCCGTGCTCGCAAAGAGGCATCCTCC
* ** *
10294711 CCCAATGTAATTACGAGTACATTTTCTCTTCATGATGTTAATGTTATTACTTTGATTGATTCGGG
261 CCCAATGTAATTACGAGTACATTTTCTCTCCATGATACTAATGTTATTACTTTGATTGATCCGGG
* *
10294776 TTCGACCCATTCCTATGTTTGCATGAAATTGA
326 TTCAACCCATTCATATGTTTGCATGAAATTGA
10294808 CAGGTCAGTGTCGAGCAACTAAGACAGGTTGTTTCCGATGTAGTGCACCAGACCATTTTATTCAG
1 CAGGTCAGTGTCGAGCAACTAAGACAGGTTGTTTCCGATGTAGTGCACCAGACCATTTTATTCAG
10294873 AAGTGTCCCGAGATGATTAAAAGGGAAGCAATACCGAGTGTAAGATCAGGCAAAGCTCCTGTCAG
66 AAGTGTCCCGAGATGATTAAAAGGGAAGCAATACCGAGTGTAAGATCAGGCAAAGCTCCTGTCAG
10294938 AGGTAGACCACTGAGAAATCTTGGAGCTGGGGCAAGTAATAGAGGTGCATCTAGAGATTCAGCAG
131 AGGTAGACCACTGAGAAATCTTGGAGCTGGGGCAAGTAATAGAGGTGCATCTAGAGATTCAGCAG
*
10295003 TGAGGCCAGATGTTAGAGCACCTGCAAGGACTTATGCTATCCGTGCTCGCAAAGGGGCATCCTCC
196 TGAGGCCAGATGTTAGAGCACCTGCAAGGACTTATGCTATCCGTGCTCGCAAAGAGGCATCCTCC
* * *
10295068 CCCGATGTGATTAC-AGGTACATTTTCTCTCCATGATACTAGA-GTTATTGCTTTGATTGATCCG
261 CCCAATGTAATTACGA-GTACATTTTCTCTCCATGATACTA-ATGTTATTACTTTGATTGATCCG
*
10295131 GGTTTAACCCATTCATATGTTTGCATGAAATTGA
324 GGTTCAACCCATTCATATGTTTGCATGAAATTGA
10295165 TGCCTAGTAT
Statistics
Matches: 342, Mismatches: 13, Indels: 4
0.95 0.04 0.01
Matches are distributed among these distances:
356 1 0.00
357 340 0.99
358 1 0.00
ACGTcount: A:0.28, C:0.20, G:0.25, T:0.27
Consensus pattern (357 bp):
CAGGTCAGTGTCGAGCAACTAAGACAGGTTGTTTCCGATGTAGTGCACCAGACCATTTTATTCAG
AAGTGTCCCGAGATGATTAAAAGGGAAGCAATACCGAGTGTAAGATCAGGCAAAGCTCCTGTCAG
AGGTAGACCACTGAGAAATCTTGGAGCTGGGGCAAGTAATAGAGGTGCATCTAGAGATTCAGCAG
TGAGGCCAGATGTTAGAGCACCTGCAAGGACTTATGCTATCCGTGCTCGCAAAGAGGCATCCTCC
CCCAATGTAATTACGAGTACATTTTCTCTCCATGATACTAATGTTATTACTTTGATTGATCCGGG
TTCAACCCATTCATATGTTTGCATGAAATTGA
Found at i:10298923 original size:23 final size:24
Alignment explanation
Indices: 10298897--10298941 Score: 74
Period size: 23 Copynumber: 1.9 Consensus size: 24
10298887 AAGGTAAGGT
*
10298897 AAGGTAAGACGAGTT-ATGCTAAA
1 AAGGTAAGACAAGTTCATGCTAAA
10298920 AAGGTAAGACAAGTTCATGCTA
1 AAGGTAAGACAAGTTCATGCTA
10298942 GAAGAGCAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
23 14 0.70
24 6 0.30
ACGTcount: A:0.42, C:0.11, G:0.24, T:0.22
Consensus pattern (24 bp):
AAGGTAAGACAAGTTCATGCTAAA
Found at i:10299040 original size:16 final size:16
Alignment explanation
Indices: 10299019--10299049 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
10299009 ATAAATTTGA
10299019 TTAAGTAAGTAAGTAT
1 TTAAGTAAGTAAGTAT
*
10299035 TTAAGTAAGTGAGTA
1 TTAAGTAAGTAAGTA
10299050 AGTGAAGAAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.00, G:0.23, T:0.35
Consensus pattern (16 bp):
TTAAGTAAGTAAGTAT
Found at i:10305085 original size:20 final size:20
Alignment explanation
Indices: 10305019--10305077 Score: 91
Period size: 20 Copynumber: 3.0 Consensus size: 20
10305009 ATTTCGATAA
*
10305019 ACATGGTATGTATGATATGC
1 ACATGATATGTATGATATGC
* *
10305039 ACATGACATGTACGATATGC
1 ACATGATATGTATGATATGC
10305059 ACATGATATGTATGATATG
1 ACATGATATGTATGATATG
10305078 TACGTGATGT
Statistics
Matches: 34, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 34 1.00
ACGTcount: A:0.34, C:0.12, G:0.22, T:0.32
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:10305191 original size:24 final size:23
Alignment explanation
Indices: 10305135--10305215 Score: 92
Period size: 24 Copynumber: 3.4 Consensus size: 23
10305125 GAGGAAGTGA
* *
10305135 AAAAGGGCTTATGCCCTAGTTATT
1 AAAAGGGCTT-TTCCCCAGTTATT
10305159 -AAAGGGCTTTTCCCACAGTTATT
1 AAAAGGGCTTTTCCC-CAGTTATT
10305182 AAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTTT-CCCCAGTTATT
*
10305206 CAAAGAGGCT
1 AAAAG-GGCT
10305216 AGGCCTCCAG
Statistics
Matches: 50, Mismatches: 3, Indels: 7
0.83 0.05 0.12
Matches are distributed among these distances:
22 4 0.08
23 16 0.32
24 23 0.46
25 7 0.14
ACGTcount: A:0.28, C:0.20, G:0.21, T:0.31
Consensus pattern (23 bp):
AAAAGGGCTTTTCCCCAGTTATT
Found at i:10312701 original size:20 final size:20
Alignment explanation
Indices: 10312635--10312701 Score: 107
Period size: 20 Copynumber: 3.4 Consensus size: 20
10312625 ATTTTGATAA
*
10312635 ACATGGTATGTATGATATGC
1 ACATGATATGTATGATATGC
*
10312655 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
10312675 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
*
10312695 ACGTGAT
1 ACATGAT
10312702 GTAATCATGA
Statistics
Matches: 43, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 43 1.00
ACGTcount: A:0.33, C:0.12, G:0.22, T:0.33
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:10312782 original size:23 final size:23
Alignment explanation
Indices: 10312752--10312824 Score: 128
Period size: 23 Copynumber: 3.1 Consensus size: 23
10312742 AGGAAGTGAA
10312752 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
10312775 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
*
10312798 AAAAGGGCTTTTGCCCCAGTTATT
1 -AAAGGGCTTATGCCCCAGTTATT
10312822 AAA
1 AAA
10312825 AGAGGCTAGG
Statistics
Matches: 48, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
23 26 0.54
24 22 0.46
ACGTcount: A:0.29, C:0.21, G:0.21, T:0.30
Consensus pattern (23 bp):
AAAGGGCTTATGCCCCAGTTATT
Found at i:10312807 original size:24 final size:24
Alignment explanation
Indices: 10312751--10312831 Score: 137
Period size: 24 Copynumber: 3.4 Consensus size: 24
10312741 GAGGAAGTGA
10312751 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
10312775 -AAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
10312798 AAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
10312822 AAAAGAGGCT
1 AAAAG-GGCT
10312832 AGGCCTCCAG
Statistics
Matches: 54, Mismatches: 1, Indels: 3
0.93 0.02 0.05
Matches are distributed among these distances:
23 23 0.43
24 27 0.50
25 4 0.07
ACGTcount: A:0.30, C:0.20, G:0.22, T:0.28
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:10313079 original size:31 final size:31
Alignment explanation
Indices: 10313041--10313100 Score: 84
Period size: 31 Copynumber: 1.9 Consensus size: 31
10313031 TACAGTAAAG
*
10313041 GCTTCGGCCCAGTAATATGAAATTTGAAAAA
1 GCTTCGGCCCAGTAATATGAAATATGAAAAA
* **
10313072 GCTTCGGCCTAGTGTTATGAAATATGAAA
1 GCTTCGGCCCAGTAATATGAAATATGAAA
10313101 TATGAGAAGG
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
31 25 1.00
ACGTcount: A:0.35, C:0.15, G:0.22, T:0.28
Consensus pattern (31 bp):
GCTTCGGCCCAGTAATATGAAATATGAAAAA
Found at i:10322097 original size:14 final size:14
Alignment explanation
Indices: 10322078--10322104 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
10322068 CCGAAACTAG
10322078 AAAGAAAAAAAAAC
1 AAAGAAAAAAAAAC
10322092 AAAGAAAAAAAAA
1 AAAGAAAAAAAAA
10322105 TGCTCATCCT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.89, C:0.04, G:0.07, T:0.00
Consensus pattern (14 bp):
AAAGAAAAAAAAAC
Found at i:10323277 original size:39 final size:40
Alignment explanation
Indices: 10323182--10323443 Score: 337
Period size: 39 Copynumber: 6.7 Consensus size: 40
10323172 TTGAATGATG
*
10323182 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTA-AGTGAC-AAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAAT
*
10323220 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTAAT
10323261 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
10323300 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* *
10323339 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
*
10323378 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGA-ATTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-TACTAAT
* *
10323417 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
10323444 AACGAGGAGC
Statistics
Matches: 203, Mismatches: 11, Indels: 17
0.88 0.05 0.07
Matches are distributed among these distances:
39 132 0.65
40 59 0.29
41 11 0.05
42 1 0.00
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.24
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
Found at i:10325976 original size:42 final size:42
Alignment explanation
Indices: 10325929--10326032 Score: 172
Period size: 42 Copynumber: 2.5 Consensus size: 42
10325919 TATCGGGATG
* * *
10325929 TGAGATTCATGTAAGACCATGACTGGGACATTTGCATCGATA
1 TGAGATTCGTGTAAGACCATGACTAGGACATTGGCATCGATA
*
10325971 TGAGATTCGTGTAAGACCATGTCTAGGACATTGGCATCGATA
1 TGAGATTCGTGTAAGACCATGACTAGGACATTGGCATCGATA
10326013 TGAGATTCGTGTAAGACCAT
1 TGAGATTCGTGTAAGACCAT
10326033 AGCTAAGCTA
Statistics
Matches: 58, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
42 58 1.00
ACGTcount: A:0.30, C:0.16, G:0.25, T:0.29
Consensus pattern (42 bp):
TGAGATTCGTGTAAGACCATGACTAGGACATTGGCATCGATA
Found at i:10326046 original size:42 final size:42
Alignment explanation
Indices: 10325929--10326054 Score: 159
Period size: 42 Copynumber: 3.0 Consensus size: 42
10325919 TATCGGGATG
* * ** *
10325929 TGAGATTCATGTAAGACCATGACTGGGACATTTGCATCGATA
1 TGAGATTCGTGTAAGACCATGTCTAAGACATTGGCATCGATA
*
10325971 TGAGATTCGTGTAAGACCATGTCTAGGACATTGGCATCGATA
1 TGAGATTCGTGTAAGACCATGTCTAAGACATTGGCATCGATA
10326013 TGAGATTCGTGTAAGACCATAG-CTAAG-CTATTGG-ATCGATA
1 TGAGATTCGTGTAAGACCAT-GTCTAAGAC-ATTGGCATCGATA
10326054 T
1 T
10326055 ACTATAACAT
Statistics
Matches: 77, Mismatches: 5, Indels: 5
0.89 0.06 0.06
Matches are distributed among these distances:
41 9 0.12
42 67 0.87
43 1 0.01
ACGTcount: A:0.30, C:0.16, G:0.25, T:0.29
Consensus pattern (42 bp):
TGAGATTCGTGTAAGACCATGTCTAAGACATTGGCATCGATA
Found at i:10326967 original size:21 final size:21
Alignment explanation
Indices: 10326941--10326997 Score: 60
Period size: 24 Copynumber: 2.5 Consensus size: 21
10326931 ATGGTATAAG
10326941 GTTGATGAATTGGTACATTTT
1 GTTGATGAATTGGTACATTTT
*
10326962 GTTGATGATGAATTGGTATATTTT
1 G-T--TGATGAATTGGTACATTTT
*
10326986 GTGGCATGAATT
1 GTTG-ATGAATT
10326998 ATATGATAAT
Statistics
Matches: 30, Mismatches: 2, Indels: 7
0.77 0.05 0.18
Matches are distributed among these distances:
21 2 0.07
22 8 0.27
23 1 0.03
24 19 0.63
ACGTcount: A:0.25, C:0.04, G:0.26, T:0.46
Consensus pattern (21 bp):
GTTGATGAATTGGTACATTTT
Found at i:10333287 original size:29 final size:28
Alignment explanation
Indices: 10333251--10333328 Score: 104
Period size: 29 Copynumber: 2.7 Consensus size: 28
10333241 TCATGAGATT
10333251 GGCACTAAGTGTGCGGGTTTAAATTGTACA
1 GGCACTAAGTGTGCGGGTTTAAA--GTACA
*
10333281 -GCACTAAGTGTGCGAGTTTAAAGTACA
1 GGCACTAAGTGTGCGGGTTTAAAGTACA
10333308 TGGCACTAAGTGTGCGTGGTT
1 -GGCACTAAGTGTGCG-GGTT
10333329 GATTATTAAG
Statistics
Matches: 43, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
27 5 0.12
29 35 0.81
30 3 0.07
ACGTcount: A:0.26, C:0.14, G:0.31, T:0.29
Consensus pattern (28 bp):
GGCACTAAGTGTGCGGGTTTAAAGTACA
Found at i:10333546 original size:174 final size:174
Alignment explanation
Indices: 10333281--10333608 Score: 602
Period size: 174 Copynumber: 1.9 Consensus size: 174
10333271 AAATTGTACA
*
10333281 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGTGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
* * *
10333346 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACCTTATCGAGTCGA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACCTTACCGAGTCAA
10333411 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
131 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
*
10333455 GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
*
10333520 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACCTTACCGAGTCAA
10333585 TTTTGGACAGCGGAAAAGGTAAGT
131 TTTTGGACAGCGGAAAAGGTAAGT
10333609 ACCTTGAGTT
Statistics
Matches: 148, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
174 148 1.00
ACGTcount: A:0.30, C:0.14, G:0.24, T:0.31
Consensus pattern (174 bp):
GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACCTTACCGAGTCAA
TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
Found at i:10338896 original size:40 final size:40
Alignment explanation
Indices: 10338834--10338919 Score: 118
Period size: 40 Copynumber: 2.1 Consensus size: 40
10338824 NNNNNNNNNN
* *
10338834 TTGTGCAAGTTGATATATCCGGGCTAAGACCCGAAGGCAT
1 TTGTGCAAGTTGATATACCCGGGCTAAGACCCGAAGGCAA
* * * *
10338874 TTGTGCGAGTTGCTATACCCGGGTTAAGACCTGAAGGCAA
1 TTGTGCAAGTTGATATACCCGGGCTAAGACCCGAAGGCAA
10338914 TTGTGC
1 TTGTGC
10338920 TTGTGGTTAT
Statistics
Matches: 40, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
40 40 1.00
ACGTcount: A:0.24, C:0.20, G:0.29, T:0.27
Consensus pattern (40 bp):
TTGTGCAAGTTGATATACCCGGGCTAAGACCCGAAGGCAA
Found at i:10341654 original size:20 final size:21
Alignment explanation
Indices: 10341629--10341669 Score: 66
Period size: 20 Copynumber: 2.0 Consensus size: 21
10341619 CTCTCTCTCT
*
10341629 TTTTTTGTTTAATTT-TTTTC
1 TTTTTTATTTAATTTGTTTTC
10341649 TTTTTTATTTAATTTGTTTTC
1 TTTTTTATTTAATTTGTTTTC
10341670 AAATTTTTAC
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 14 0.74
21 5 0.26
ACGTcount: A:0.12, C:0.05, G:0.05, T:0.78
Consensus pattern (21 bp):
TTTTTTATTTAATTTGTTTTC
Found at i:10344528 original size:16 final size:16
Alignment explanation
Indices: 10344485--10344530 Score: 58
Period size: 16 Copynumber: 2.8 Consensus size: 16
10344475 AGTGGGTGTT
10344485 TTATAAGTTAAAATAG
1 TTATAAGTTAAAATAG
*
10344501 TTAATAAATTAATAATA-
1 TT-ATAAGTTAA-AATAG
10344518 TTATAAGTTAAAA
1 TTATAAGTTAAAA
10344531 ACATAAAATG
Statistics
Matches: 26, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
15 2 0.08
16 10 0.38
17 10 0.38
18 4 0.15
ACGTcount: A:0.54, C:0.00, G:0.07, T:0.39
Consensus pattern (16 bp):
TTATAAGTTAAAATAG
Found at i:10345222 original size:20 final size:20
Alignment explanation
Indices: 10345197--10345241 Score: 90
Period size: 20 Copynumber: 2.2 Consensus size: 20
10345187 ATCATTATAA
10345197 CTGTTGGAACTACGGTGCTC
1 CTGTTGGAACTACGGTGCTC
10345217 CTGTTGGAACTACGGTGCTC
1 CTGTTGGAACTACGGTGCTC
10345237 CTGTT
1 CTGTT
10345242 ACCACTATGG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.13, C:0.24, G:0.29, T:0.33
Consensus pattern (20 bp):
CTGTTGGAACTACGGTGCTC
Found at i:10345314 original size:20 final size:20
Alignment explanation
Indices: 10345205--10345316 Score: 91
Period size: 20 Copynumber: 5.6 Consensus size: 20
10345195 AACTGTTGGA
* *
10345205 ACTACGGTGCTCCTGTTGGA
1 ACTACGGTGCTCCTGTTAGC
*
10345225 ACTACGGTGCTCCTGTTACC
1 ACTACGGTGCTCCTGTTAGC
* * **
10345245 ACTATGGTGCACCTACTAGC
1 ACTACGGTGCTCCTGTTAGC
* * *
10345265 ACTACAGAGCTCCTGATAGC
1 ACTACGGTGCTCCTGTTAGC
** *
10345285 AC-ATTTGTGCTCCTTTTAGC
1 ACTA-CGGTGCTCCTGTTAGC
10345305 ACTACGGTGCTC
1 ACTACGGTGCTC
10345317 TTGATAGCAT
Statistics
Matches: 69, Mismatches: 21, Indels: 4
0.73 0.22 0.04
Matches are distributed among these distances:
19 1 0.01
20 67 0.97
21 1 0.01
ACGTcount: A:0.20, C:0.29, G:0.21, T:0.29
Consensus pattern (20 bp):
ACTACGGTGCTCCTGTTAGC
Found at i:10351568 original size:33 final size:34
Alignment explanation
Indices: 10351490--10351568 Score: 90
Period size: 34 Copynumber: 2.4 Consensus size: 34
10351480 ATTTCAGTTA
* *
10351490 GGGCCTTAGCCCATTTCAGAATCAGAATCAGTGT
1 GGGCCTAAGCCCATTCCAGAATCAGAATCAGTGT
* * *
10351524 GGGCCTGAGCCCATTCCAGTAA-CAGTATTAGTG-
1 GGGCCTAAGCCCATTCCAG-AATCAGAATCAGTGT
10351557 GGGCCTAAGCCC
1 GGGCCTAAGCCC
10351569 GTTATAGAAT
Statistics
Matches: 39, Mismatches: 5, Indels: 3
0.83 0.11 0.06
Matches are distributed among these distances:
33 11 0.28
34 26 0.67
35 2 0.05
ACGTcount: A:0.24, C:0.27, G:0.27, T:0.23
Consensus pattern (34 bp):
GGGCCTAAGCCCATTCCAGAATCAGAATCAGTGT
Found at i:10351980 original size:27 final size:26
Alignment explanation
Indices: 10351948--10352100 Score: 94
Period size: 27 Copynumber: 5.7 Consensus size: 26
10351938 GGCAAGTCAA
* *
10351948 TCATTTTTCCTTATAGGGATATTATAG
1 TCATTTTACCTTATAGGG-TATTACAG
* *
10351975 TCATTTTACCGTACAGGTGTATTACAG
1 TCATTTTACCTTATAGG-GTATTACAG
**
10352002 TCATTTTACCTTATAGGGGTATCTTGA-
1 TCATTTTACCTTATA-GGGTAT-TACAG
* * * * *
10352029 TCACTTTACCCTATGGGGGTATTTCGG
1 TCATTTTACCTTAT-AGGGTATTACAG
* * *
10352056 TCATTTTACCCTATGGGGGTATCT-CGG
1 TCATTTTACCTTAT-AGGGTAT-TACAG
*
10352083 TCATTTTACCCTATAGGG
1 TCATTTTACCTTATAGGG
10352101 GTAGTTCGGT
Statistics
Matches: 105, Mismatches: 15, Indels: 13
0.79 0.11 0.10
Matches are distributed among these distances:
26 5 0.05
27 94 0.90
28 6 0.06
ACGTcount: A:0.21, C:0.18, G:0.20, T:0.41
Consensus pattern (26 bp):
TCATTTTACCTTATAGGGTATTACAG
Found at i:10352037 original size:54 final size:55
Alignment explanation
Indices: 10351948--10352103 Score: 140
Period size: 54 Copynumber: 2.9 Consensus size: 55
10351938 GGCAAGTCAA
* * * * *
10351948 TCATTTTTCCTTATAGGGATAT-TATAGTCATTTTACCGTACAGGTGTATTACAG
1 TCATTTTACCTTATAGGGGTATCTATAGTCACTTTACCCTACAGGGGTATTACAG
** * *
10352002 TCATTTTACCTTATAGGGGTATCT-T-GATCACTTTACCCTATGGGGGTATTTCGG
1 TCATTTTACCTTATAGGGGTATCTATAG-TCACTTTACCCTACAGGGGTATTACAG
* * ** * *
10352056 TCATTTTACCCTATGGGGGTATCT-CGGTCATTTTACCCTATAGGGGTA
1 TCATTTTACCTTATAGGGGTATCTATAGTCACTTTACCCTACAGGGGTA
10352104 GTTCGGTCAT
Statistics
Matches: 85, Mismatches: 14, Indels: 6
0.81 0.13 0.06
Matches are distributed among these distances:
53 1 0.01
54 82 0.96
55 2 0.02
ACGTcount: A:0.21, C:0.18, G:0.21, T:0.40
Consensus pattern (55 bp):
TCATTTTACCTTATAGGGGTATCTATAGTCACTTTACCCTACAGGGGTATTACAG
Found at i:10352101 original size:27 final size:26
Alignment explanation
Indices: 10351974--10352113 Score: 145
Period size: 27 Copynumber: 5.2 Consensus size: 26
10351964 GGATATTATA
* * * *
10351974 GTCATTTTACCGTACAGGTGTATTACA
1 GTCATTTTACCCTATAGGGGTATT-CG
* *
10352001 GTCATTTTACCTTATAGGGGTATCTTG
1 GTCATTTTACCCTATAGGGGTAT-TCG
* * *
10352028 ATCACTTTACCCTATGGGGGTATTTCG
1 GTCATTTTACCCTATAGGGGTA-TTCG
*
10352055 GTCATTTTACCCTATGGGGGTATCTCG
1 GTCATTTTACCCTATAGGGGTAT-TCG
10352082 GTCATTTTACCCTATAGGGGTAGTTCG
1 GTCATTTTACCCTATAGGGGTA-TTCG
10352109 GTCAT
1 GTCAT
10352114 ACATGGCCCA
Statistics
Matches: 96, Mismatches: 13, Indels: 8
0.82 0.11 0.07
Matches are distributed among these distances:
26 1 0.01
27 92 0.96
28 3 0.03
ACGTcount: A:0.19, C:0.19, G:0.23, T:0.39
Consensus pattern (26 bp):
GTCATTTTACCCTATAGGGGTATTCG
Found at i:10352109 original size:54 final size:53
Alignment explanation
Indices: 10351974--10352113 Score: 163
Period size: 54 Copynumber: 2.6 Consensus size: 53
10351964 GGATATTATA
* * * * * *
10351974 GTCATTTTACCGTACAGGTGTATTACAGTCATTTTACCTTATAGGGGTATCTTG
1 GTCATTTTACCCTATAGGGGTATT-CGGTCATTTTACCCTATAGGGGTATCTCG
* * * *
10352028 ATCACTTTACCCTATGGGGGTATTTCGGTCATTTTACCCTATGGGGGTATCTCG
1 GTCATTTTACCCTATAGGGGTA-TTCGGTCATTTTACCCTATAGGGGTATCTCG
10352082 GTCATTTTACCCTATAGGGGTAGTTCGGTCAT
1 GTCATTTTACCCTATAGGGGTA-TTCGGTCAT
10352114 ACATGGCCCA
Statistics
Matches: 71, Mismatches: 14, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
54 69 0.97
55 2 0.03
ACGTcount: A:0.19, C:0.19, G:0.23, T:0.39
Consensus pattern (53 bp):
GTCATTTTACCCTATAGGGGTATTCGGTCATTTTACCCTATAGGGGTATCTCG
Found at i:10356014 original size:43 final size:42
Alignment explanation
Indices: 10355967--10356056 Score: 144
Period size: 42 Copynumber: 2.1 Consensus size: 42
10355957 GAGCGGTCTG
10355967 AGTTCGTGATATATGTGAGAATCCAAACTTGTTGAGTGGTCCA
1 AGTTCGTGATATATGT-AGAATCCAAACTTGTTGAGTGGTCCA
* * *
10356010 AGTTCGTGATATATGTAGTATCCAAGCTTGTTGAGTGGTCCG
1 AGTTCGTGATATATGTAGAATCCAAACTTGTTGAGTGGTCCA
10356052 AGTTC
1 AGTTC
10356057 ATTATGGATG
Statistics
Matches: 44, Mismatches: 3, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
42 28 0.64
43 16 0.36
ACGTcount: A:0.24, C:0.14, G:0.27, T:0.34
Consensus pattern (42 bp):
AGTTCGTGATATATGTAGAATCCAAACTTGTTGAGTGGTCCA
Found at i:10356045 original size:42 final size:43
Alignment explanation
Indices: 10355943--10356056 Score: 158
Period size: 43 Copynumber: 2.7 Consensus size: 43
10355933 GGAATTTAGA
* * * *
10355943 AATCCGAGCTCGTTGAGCGGTCTGAGTTCGTGATATATGTGAG
1 AATCCAAGCTTGTTGAGTGGTCCGAGTTCGTGATATATGTGAG
* *
10355986 AATCCAAACTTGTTGAGTGGTCCAAGTTCGTGATATATGT-AG
1 AATCCAAGCTTGTTGAGTGGTCCGAGTTCGTGATATATGTGAG
*
10356028 TATCCAAGCTTGTTGAGTGGTCCGAGTTC
1 AATCCAAGCTTGTTGAGTGGTCCGAGTTC
10356057 ATTATGGATG
Statistics
Matches: 62, Mismatches: 9, Indels: 1
0.86 0.12 0.01
Matches are distributed among these distances:
42 28 0.45
43 34 0.55
ACGTcount: A:0.23, C:0.17, G:0.28, T:0.32
Consensus pattern (43 bp):
AATCCAAGCTTGTTGAGTGGTCCGAGTTCGTGATATATGTGAG
Found at i:10360915 original size:37 final size:37
Alignment explanation
Indices: 10360865--10360967 Score: 188
Period size: 37 Copynumber: 2.8 Consensus size: 37
10360855 GGAAATATAT
10360865 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
10360902 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
10360939 TCCGGGTAAGACCCGATAACTACGTGTGG
1 TCCGGGTAAGACCCGATGACTACGTGTGG
10360968 GGACTATTCG
Statistics
Matches: 64, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 64 1.00
ACGTcount: A:0.23, C:0.20, G:0.32, T:0.24
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:10365765 original size:12 final size:12
Alignment explanation
Indices: 10365748--10365772 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
10365738 TGGCCAACCA
10365748 TAAGCCCATGTG
1 TAAGCCCATGTG
10365760 TAAGCCCATGTG
1 TAAGCCCATGTG
10365772 T
1 T
10365773 CACACACGAC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.24, C:0.24, G:0.24, T:0.28
Consensus pattern (12 bp):
TAAGCCCATGTG
Found at i:10368164 original size:29 final size:29
Alignment explanation
Indices: 10368127--10368190 Score: 119
Period size: 29 Copynumber: 2.2 Consensus size: 29
10368117 AGGCCCATTG
*
10368127 GGCCTACACGGCCCAGTTCGACCCAAAAT
1 GGCCCACACGGCCCAGTTCGACCCAAAAT
10368156 GGCCCACACGGCCCAGTTCGACCCAAAAT
1 GGCCCACACGGCCCAGTTCGACCCAAAAT
10368185 GGCCCA
1 GGCCCA
10368191 GTATCGTTTT
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 34 1.00
ACGTcount: A:0.27, C:0.41, G:0.22, T:0.11
Consensus pattern (29 bp):
GGCCCACACGGCCCAGTTCGACCCAAAAT
Found at i:10371342 original size:40 final size:40
Alignment explanation
Indices: 10371296--10371381 Score: 120
Period size: 40 Copynumber: 2.1 Consensus size: 40
10371286 GGATTTAGAA
* *
10371296 GGATATAG-CAACTCGCACAAATGCCTTCGGGTCTTAGCCC
1 GGATATAGTC-ACTAGCACAAATGCCTTCGGGACTTAGCCC
**
10371336 GGATATAGTCACTAGCATGAATGCCTTCGGGACTTAGCCC
1 GGATATAGTCACTAGCACAAATGCCTTCGGGACTTAGCCC
10371376 GGATAT
1 GGATAT
10371382 CATCCGAATA
Statistics
Matches: 41, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
40 40 0.98
41 1 0.02
ACGTcount: A:0.26, C:0.26, G:0.24, T:0.24
Consensus pattern (40 bp):
GGATATAGTCACTAGCACAAATGCCTTCGGGACTTAGCCC
Found at i:10374766 original size:43 final size:43
Alignment explanation
Indices: 10374638--10374770 Score: 121
Period size: 43 Copynumber: 3.1 Consensus size: 43
10374628 GAAATAAGCC
* *
10374638 TGCTAGACCTTTAAGTCCGATATCATTTCACCGGCATTACACC
1 TGCTAGACCTTTAAGTCCGATATCATTTCACCGGCATTACGCT
* * *** * ** *
10374681 TGGTAG-GCTCGGAGCCCGATA--ATATTCACCAAC-TTAAAGCT
1 TGCTAGACCTTTAAGTCCGATATCAT-TTCACCGGCATT-ACGCT
10374722 TGCTAGACCTTTAAGTCCGATATCATTTCACCGGCATTACGCT
1 TGCTAGACCTTTAAGTCCGATATCATTTCACCGGCATTACGCT
10374765 TGCTAG
1 TGCTAG
10374771 GTATGAAACC
Statistics
Matches: 64, Mismatches: 20, Indels: 12
0.67 0.21 0.12
Matches are distributed among these distances:
40 4 0.06
41 14 0.22
42 20 0.31
43 22 0.34
44 4 0.06
ACGTcount: A:0.26, C:0.27, G:0.18, T:0.29
Consensus pattern (43 bp):
TGCTAGACCTTTAAGTCCGATATCATTTCACCGGCATTACGCT
Found at i:10374783 original size:84 final size:86
Alignment explanation
Indices: 10374633--10374792 Score: 227
Period size: 84 Copynumber: 1.9 Consensus size: 86
10374623 CACCGGAAAT
* * *
10374633 AAGCCTGCTAGACCTTTAAGTCCGATATCATTTCACCGGCATTACACCTGGTAGGCTCGGAGCCC
1 AAGCCTGCTAGACCTTTAAGTCCGATATCATTTCACCGGCATTACACCTGCTAGGCTCGAAACCC
10374698 G-ATA-ATATTCACCAACTTA
66 GAATATATATTCACCAACTTA
* * * *
10374717 AAGCTTGCTAGACCTTTAAGTCCGATATCATTTCACCGGCATTACGCTTGCTAGG-TATGAAACC
1 AAGCCTGCTAGACCTTTAAGTCCGATATCATTTCACCGGCATTACACCTGCTAGGCT-CGAAACC
10374781 CGAATATATATT
65 CGAATATATATT
10374793 ATAATGTATA
Statistics
Matches: 66, Mismatches: 7, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
83 1 0.02
84 57 0.86
85 3 0.05
86 5 0.08
ACGTcount: A:0.28, C:0.26, G:0.17, T:0.29
Consensus pattern (86 bp):
AAGCCTGCTAGACCTTTAAGTCCGATATCATTTCACCGGCATTACACCTGCTAGGCTCGAAACCC
GAATATATATTCACCAACTTA
Found at i:10376648 original size:14 final size:15
Alignment explanation
Indices: 10376619--10376648 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
10376609 CAAAATTAAG
10376619 ACATGATACTTTCAC
1 ACATGATACTTTCAC
10376634 ACATGATAC-TTCAC
1 ACATGATACTTTCAC
10376648 A
1 A
10376649 TATAATAAAC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 6 0.40
15 9 0.60
ACGTcount: A:0.37, C:0.27, G:0.07, T:0.30
Consensus pattern (15 bp):
ACATGATACTTTCAC
Found at i:10383486 original size:42 final size:43
Alignment explanation
Indices: 10383423--10383613 Score: 187
Period size: 42 Copynumber: 4.4 Consensus size: 43
10383413 AGACGTGGTC
*
10383423 TATCGATGCCACTGTCCCAGACAGGGTCTTACACG-AAA-TCA
1 TATCGATGCCAATGTCCCAGACAGGGTCTTACACGTAAACTCA
*
10383464 TATCTGATGCCAATGTCCCAGACATGGTCTTACACGTAAATCTCA
1 TATC-GATGCCAATGTCCCAGACAGGGTCTTACACGTAAA-CTCA
* * * * *
10383509 AATCGATGACAACGT-CC-TACATGTGGTTTTACACG-AAA-TCA
1 TATCGATGCCAATGTCCCAGACA-G-GGTCTTACACGTAAACTCA
* * *
10383550 TATTTGATGCCAATGTCCCAGACATGGTCTCACACGTAAATCTCA
1 TA-TCGATGCCAATGTCCCAGACAGGGTCTTACACGTAAA-CTCA
*
10383595 AATCGATGCCAATGTCCCA
1 TATCGATGCCAATGTCCCA
10383614 TTCGTGATCT
Statistics
Matches: 120, Mismatches: 18, Indels: 21
0.75 0.11 0.13
Matches are distributed among these distances:
41 8 0.07
42 51 0.43
43 13 0.11
44 38 0.32
45 10 0.08
ACGTcount: A:0.30, C:0.27, G:0.17, T:0.26
Consensus pattern (43 bp):
TATCGATGCCAATGTCCCAGACAGGGTCTTACACGTAAACTCA
Found at i:10383569 original size:86 final size:86
Alignment explanation
Indices: 10383451--10383611 Score: 286
Period size: 86 Copynumber: 1.9 Consensus size: 86
10383441 AGACAGGGTC
*
10383451 TTACACGAAATCATATCTGATGCCAATGTCCCAGACATGGTCTTACACGTAAATCTCAAATCGAT
1 TTACACGAAATCATATCTGATGCCAATGTCCCAGACATGGTCTCACACGTAAATCTCAAATCGAT
10383516 GACAACGTCCTACATGTGGTT
66 GACAACGTCCTACATGTGGTT
*
10383537 TTACACGAAATCATATTTGATGCCAATGTCCCAGACATGGTCTCACACGTAAATCTCAAATCGAT
1 TTACACGAAATCATATCTGATGCCAATGTCCCAGACATGGTCTCACACGTAAATCTCAAATCGAT
* *
10383602 GCCAATGTCC
66 GACAACGTCC
10383612 CATTCGTGAT
Statistics
Matches: 71, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
86 71 1.00
ACGTcount: A:0.32, C:0.25, G:0.16, T:0.27
Consensus pattern (86 bp):
TTACACGAAATCATATCTGATGCCAATGTCCCAGACATGGTCTCACACGTAAATCTCAAATCGAT
GACAACGTCCTACATGTGGTT
Found at i:10383634 original size:86 final size:85
Alignment explanation
Indices: 10383453--10383635 Score: 260
Period size: 86 Copynumber: 2.1 Consensus size: 85
10383443 ACAGGGTCTT
*
10383453 ACACGAAATCATATCTGATGCCAATGTCCCAGACATGGTCTTACACGTAAATCTCAAATCGATGA
1 ACACGAAATCATATCTGATGCCAATGTCCCAGACATGGTCTCACACGTAAATCTCAAATCGATGA
* * *
10383518 CAACGTCCTACATGTGGTTTT
66 CAACGTCC-ACATGTGATCTC
* *
10383539 ACACGAAATCATATTTGATGCCAATGTCCCAGACATGGTCTCACACGTAAATCTCAAATCGATGC
1 ACACGAAATCATATCTGATGCCAATGTCCCAGACATGGTCTCACACGTAAATCTCAAATCGATGA
*
10383604 CAATGTCC-CATTCGTGATCTC
66 CAACGTCCACA-T-GTGATCTC
*
10383625 ACACAAAATCA
1 ACACGAAATCA
10383636 CATATTGAAA
Statistics
Matches: 87, Mismatches: 8, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
84 2 0.02
85 1 0.01
86 84 0.97
ACGTcount: A:0.33, C:0.26, G:0.15, T:0.26
Consensus pattern (85 bp):
ACACGAAATCATATCTGATGCCAATGTCCCAGACATGGTCTCACACGTAAATCTCAAATCGATGA
CAACGTCCACATGTGATCTC
Found at i:10394028 original size:29 final size:29
Alignment explanation
Indices: 10393995--10394054 Score: 111
Period size: 29 Copynumber: 2.1 Consensus size: 29
10393985 AATTGTTATG
10393995 AAATTTTAAATTGGAGGTCCTTATATGGT
1 AAATTTTAAATTGGAGGTCCTTATATGGT
*
10394024 AAATTTTATATTGGAGGTCCTTATATGGT
1 AAATTTTAAATTGGAGGTCCTTATATGGT
10394053 AA
1 AA
10394055 TTAGACCATT
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.32, C:0.07, G:0.20, T:0.42
Consensus pattern (29 bp):
AAATTTTAAATTGGAGGTCCTTATATGGT
Found at i:10394065 original size:29 final size:29
Alignment explanation
Indices: 10394004--10394066 Score: 83
Period size: 29 Copynumber: 2.2 Consensus size: 29
10393994 GAAATTTTAA
** *
10394004 ATTGGAGGTCCTTATATGGTAAATTTTAT
1 ATTGGAGGTCCTTATATGGTAAATTAGAC
10394033 ATTGGAGGTCCTTATATGGT-AATTAGACC
1 ATTGGAGGTCCTTATATGGTAAATTAGA-C
10394062 ATTGG
1 ATTGG
10394067 TTAAATTGGT
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
28 5 0.17
29 25 0.83
ACGTcount: A:0.27, C:0.10, G:0.24, T:0.40
Consensus pattern (29 bp):
ATTGGAGGTCCTTATATGGTAAATTAGAC
Found at i:10401796 original size:27 final size:26
Alignment explanation
Indices: 10401764--10401919 Score: 134
Period size: 27 Copynumber: 5.8 Consensus size: 26
10401754 GGCAAGTCAA
*
10401764 TCATTTTACCTTATAGGGATATTATAG
1 TCATTTTACCTTATAGGGGTATT-TAG
* * * *
10401791 TCATTTTACCGTACAGGTGTATTACAG
1 TCATTTTACCTTATAGGGGTATT-TAG
10401818 TCATTTTACCTTATAGGGGTATCTT-G
1 TCATTTTACCTTATAGGGGTAT-TTAG
* * *
10401844 ATCATTTTACCCTATGGGGGTATTTCGG
1 -TCATTTTACCTTATAGGGGTATTT-AG
* **
10401872 TCATTTTACCTTATGGGGGTATCTCGG
1 TCATTTTACCTTATAGGGGTAT-TTAG
* *
10401899 TTATTTTACCCTATAGGGGTA
1 TCATTTTACCTTATAGGGGTA
10401920 GTTCTGTCAT
Statistics
Matches: 108, Mismatches: 16, Indels: 10
0.81 0.12 0.07
Matches are distributed among these distances:
26 3 0.03
27 102 0.94
28 3 0.03
ACGTcount: A:0.22, C:0.16, G:0.21, T:0.42
Consensus pattern (26 bp):
TCATTTTACCTTATAGGGGTATTTAG
Found at i:10401929 original size:54 final size:54
Alignment explanation
Indices: 10401764--10401929 Score: 174
Period size: 54 Copynumber: 3.1 Consensus size: 54
10401754 GGCAAGTCAA
* ** * * * *
10401764 TCATTTTACCTTATAGGGATAT-TATAGTCATTTTACCGTACAGGTGTA-TTACAG
1 TCATTTTACCTTATAGGGGTATCTCGA-TCATTTTACCCTATAGGGGTAGTT-CGG
* * *
10401818 TCATTTTACCTTATAGGGGTATCTTGATCATTTTACCCTATGGGGGTATTTCGG
1 TCATTTTACCTTATAGGGGTATCTCGATCATTTTACCCTATAGGGGTAGTTCGG
* * * *
10401872 TCATTTTACCTTATGGGGGTATCTCGGTTATTTTACCCTATAGGGGTAGTTCTG
1 TCATTTTACCTTATAGGGGTATCTCGATCATTTTACCCTATAGGGGTAGTTCGG
10401926 TCAT
1 TCAT
10401930 ACATGGCCCA
Statistics
Matches: 95, Mismatches: 15, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
54 91 0.96
55 4 0.04
ACGTcount: A:0.21, C:0.16, G:0.20, T:0.42
Consensus pattern (54 bp):
TCATTTTACCTTATAGGGGTATCTCGATCATTTTACCCTATAGGGGTAGTTCGG
Found at i:10409372 original size:25 final size:25
Alignment explanation
Indices: 10409340--10409391 Score: 104
Period size: 25 Copynumber: 2.1 Consensus size: 25
10409330 CTCTCCATTA
10409340 CAACAGATTACCACAATCAACCAAT
1 CAACAGATTACCACAATCAACCAAT
10409365 CAACAGATTACCACAATCAACCAAT
1 CAACAGATTACCACAATCAACCAAT
10409390 CA
1 CA
10409392 TCTCGAACCT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 27 1.00
ACGTcount: A:0.48, C:0.33, G:0.04, T:0.15
Consensus pattern (25 bp):
CAACAGATTACCACAATCAACCAAT
Found at i:10412483 original size:320 final size:319
Alignment explanation
Indices: 10412081--10412716 Score: 1218
Period size: 320 Copynumber: 2.0 Consensus size: 319
10412071 ACACAAGCCA
10412081 ATTTCCCTTATCATCTAATCCACCTATATGAACATTTAACTAGCTCAAACTTCACCTATCCATAA
1 ATTTCCCTTATCATCTAATCCACCTATATGAACATTTAACTAGCTCAAACTTCACCTATCCATAA
10412146 TTACTCATTAAAACATAAAGACAACAACCATTCCCTTCAAATTCTTCCATGGCCGATTGCTCATA
66 TTACTCATTAAAACATAAAGACAACAACCATTCCCTTCAAATTCTTCCATGGCCGATTGCTCATA
*
10412211 TCACCAAAAAATTCAAAATTTTGACATGGGCTAAGTAAGGGACTTAGTAACTAGCTTTAAATATG
131 TCACCAAAAAATTCAAAATTTTGACATGGGCTAAGTAAGGGACTTAGTAACTAGCTTAAAATATG
10412276 CTAAAATTTCAAGAACTAACATGAATTACTTACCTTAATTCAAGCTTAAAGGTGACCGAATGGCT
196 CTAAAATTTCAAGAACTAACATGAATTACTTACCTTAATTCAAGCTTAAAGGTGACCGAATGGCT
*
10412341 TAGCTAACTTTTCTTTCTTTAAATTCGGCTAAGAAGAAACAAAGATGAGCACTTTGCCG
261 TAGCTAACTTTTCTTTCTTTAAATTCAGCTAAGAAGAAACAAAGATGAGCACTTTGCCG
10412400 ATTTCCCCTTATCATCTAATCCACCTATATGAACATTTAACTAGCTCAAACTTCACCTATCCATA
1 ATTT-CCCTTATCATCTAATCCACCTATATGAACATTTAACTAGCTCAAACTTCACCTATCCATA
10412465 ATTACTCATTAAAACATAAAGACAACAACCATTCCCTTCAAATTCTTCCATGGCCGATTGCTCAT
65 ATTACTCATTAAAACATAAAGACAACAACCATTCCCTTCAAATTCTTCCATGGCCGATTGCTCAT
*
10412530 ATCACCACAAAATTCAAAATTTTGACATGGGCTAAGTAAGGGACTTAGTAACTAGCTTAAAATAT
130 ATCACCAAAAAATTCAAAATTTTGACATGGGCTAAGTAAGGGACTTAGTAACTAGCTTAAAATAT
10412595 GCTAAAATTTCAAGAACTAACATGAATTACTTACCTTAATTCAAGCTTAAAGGTGACCGAATGGC
195 GCTAAAATTTCAAGAACTAACATGAATTACTTACCTTAATTCAAGCTTAAAGGTGACCGAATGGC
**
10412660 TTAGCTCCCTTTTCTTTCTTTAAATTCAGCTAAGAAGAAACAAAGATGAGCACTTTG
260 TTAGCTAACTTTTCTTTCTTTAAATTCAGCTAAGAAGAAACAAAGATGAGCACTTTG
10412717 TTTTCTTCAC
Statistics
Matches: 311, Mismatches: 5, Indels: 1
0.98 0.02 0.00
Matches are distributed among these distances:
319 4 0.01
320 307 0.99
ACGTcount: A:0.36, C:0.22, G:0.11, T:0.31
Consensus pattern (319 bp):
ATTTCCCTTATCATCTAATCCACCTATATGAACATTTAACTAGCTCAAACTTCACCTATCCATAA
TTACTCATTAAAACATAAAGACAACAACCATTCCCTTCAAATTCTTCCATGGCCGATTGCTCATA
TCACCAAAAAATTCAAAATTTTGACATGGGCTAAGTAAGGGACTTAGTAACTAGCTTAAAATATG
CTAAAATTTCAAGAACTAACATGAATTACTTACCTTAATTCAAGCTTAAAGGTGACCGAATGGCT
TAGCTAACTTTTCTTTCTTTAAATTCAGCTAAGAAGAAACAAAGATGAGCACTTTGCCG
Found at i:10420092 original size:44 final size:44
Alignment explanation
Indices: 10419913--10420102 Score: 167
Period size: 42 Copynumber: 4.4 Consensus size: 44
10419903 GACGTGGTTT
* * * * *
10419913 ATCGATGCCACTATCCCAGACAGGGTCTTACAC-AAAATCAT-AT
1 ATCGATGCCAATGTCCCAGACATGGTCTTACACGTAAATC-TCAA
* *
10419956 AT-GATGCCAATGTCCCAGACATGGTTTTACATGTAAATCTCAA
1 ATCGATGCCAATGTCCCAGACATGGTCTTACACGTAAATCTCAA
* * * * ** *
10419999 ATCGATGACAACGTCCTACATGTGGTTTTACACG-AAA--TCATA
1 ATCGATGCCAATGTCCCAGACATGGTCTTACACGTAAATCTCA-A
* *
10420041 TTTGATGCCAATGTCCCAGACATGGTCTTACACGTAAATCTCAA
1 ATCGATGCCAATGTCCCAGACATGGTCTTACACGTAAATCTCAA
*
10420085 ATCGATGCTAATGTCCCA
1 ATCGATGCCAATGTCCCA
10420103 TATGTGATCT
Statistics
Matches: 114, Mismatches: 26, Indels: 13
0.75 0.17 0.08
Matches are distributed among these distances:
41 3 0.03
42 52 0.46
43 16 0.14
44 40 0.35
45 3 0.03
ACGTcount: A:0.32, C:0.24, G:0.16, T:0.28
Consensus pattern (44 bp):
ATCGATGCCAATGTCCCAGACATGGTCTTACACGTAAATCTCAA
Found at i:10420108 original size:86 final size:86
Alignment explanation
Indices: 10419938--10420129 Score: 278
Period size: 86 Copynumber: 2.2 Consensus size: 86
10419928 CCAGACAGGG
* *
10419938 TCTTACACAAAATCATATATGATGCCAATGTCCCAGACATGGTTTTACATGTAAATCTCAAATCG
1 TCTTACACAAAATCATATATGATGCCAATGTCCCAGACATGGTCTTACACGTAAATCTCAAATCG
* *
10420003 ATGACAACGTCCTACATGTGG
66 ATGACAACGTCCCACATGTGA
* * *
10420024 TTTTACACGAAATCATATTTGATGCCAATGTCCCAGACATGGTCTTACACGTAAATCTCAAATCG
1 TCTTACACAAAATCATATATGATGCCAATGTCCCAGACATGGTCTTACACGTAAATCTCAAATCG
* *
10420089 ATG-CTAATGTCCCATATGTGA
66 ATGAC-AACGTCCCACATGTGA
*
10420110 TCTTACACAAAATCACATAT
1 TCTTACACAAAATCATATAT
10420130 CGGAATCCTA
Statistics
Matches: 92, Mismatches: 13, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
85 1 0.01
86 91 0.99
ACGTcount: A:0.34, C:0.22, G:0.14, T:0.30
Consensus pattern (86 bp):
TCTTACACAAAATCATATATGATGCCAATGTCCCAGACATGGTCTTACACGTAAATCTCAAATCG
ATGACAACGTCCCACATGTGA
Found at i:10420114 original size:44 final size:43
Alignment explanation
Indices: 10419958--10420117 Score: 119
Period size: 44 Copynumber: 3.7 Consensus size: 43
10419948 AATCATATAT
* ** * *
10419958 GATGCCAATGTCCCAGACATGGTTTTACATGTAAATCTCAAATC
1 GATG-CAATGTCCCACATGTGGTCTTACACGTAAATCTCAAATC
* * * * *
10420002 GATGACAACGTCCTACATGTGGTTTTACACG-AAA--TCATATTT
1 GATG-CAATGTCCCACATGTGGTCTTACACGTAAATCTCA-AATC
* **
10420044 GATGCCAATGTCCCAGACATGGTCTTACACGTAAATCTCAAATC
1 GATG-CAATGTCCCACATGTGGTCTTACACGTAAATCTCAAATC
* *
10420088 GATGCTAATGTCCCATATGTGATCTTACAC
1 GATGC-AATGTCCCACATGTGGTCTTACAC
10420118 AAAATCACAT
Statistics
Matches: 89, Mismatches: 22, Indels: 10
0.74 0.18 0.08
Matches are distributed among these distances:
41 3 0.03
42 26 0.29
43 7 0.08
44 50 0.56
45 3 0.03
ACGTcount: A:0.31, C:0.23, G:0.16, T:0.30
Consensus pattern (43 bp):
GATGCAATGTCCCACATGTGGTCTTACACGTAAATCTCAAATC
Found at i:10427887 original size:21 final size:21
Alignment explanation
Indices: 10427863--10427903 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
10427853 CTGTTTTAGG
10427863 ATTTTAA-ATTAGTTCTATTTT
1 ATTTTAAGA-TAGTTCTATTTT
*
10427884 ATTTTAAGATAGTTTTATTT
1 ATTTTAAGATAGTTCTATTT
10427904 CTTATTCTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 17 0.94
22 1 0.06
ACGTcount: A:0.29, C:0.02, G:0.07, T:0.61
Consensus pattern (21 bp):
ATTTTAAGATAGTTCTATTTT
Found at i:10433803 original size:22 final size:22
Alignment explanation
Indices: 10433778--10433833 Score: 94
Period size: 22 Copynumber: 2.5 Consensus size: 22
10433768 CTTCCTGAGG
10433778 ACACGGGCGTGTCCCTGTGTCC
1 ACACGGGCGTGTCCCTGTGTCC
*
10433800 ACACGGGCATGTCCCTGTGTCC
1 ACACGGGCGTGTCCCTGTGTCC
*
10433822 ACATGGGCGTGT
1 ACACGGGCGTGT
10433834 GACTCTGCTT
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 31 1.00
ACGTcount: A:0.12, C:0.32, G:0.32, T:0.23
Consensus pattern (22 bp):
ACACGGGCGTGTCCCTGTGTCC
Found at i:10434870 original size:24 final size:23
Alignment explanation
Indices: 10434842--10434893 Score: 61
Period size: 23 Copynumber: 2.2 Consensus size: 23
10434832 ACTTTTTTCA
*
10434842 AGTTTTAGTTTACAG-ATTTCATTT
1 AGTTTTA-TTTACAGTATCTC-TTT
*
10434866 AGTTTTATTTTCAGTATCTCTTT
1 AGTTTTATTTACAGTATCTCTTT
10434889 AGTTT
1 AGTTT
10434894 GCTTTTTATT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
23 14 0.56
24 11 0.44
ACGTcount: A:0.21, C:0.10, G:0.12, T:0.58
Consensus pattern (23 bp):
AGTTTTATTTACAGTATCTCTTT
Found at i:10436846 original size:27 final size:29
Alignment explanation
Indices: 10436808--10436883 Score: 104
Period size: 28 Copynumber: 2.7 Consensus size: 29
10436798 TATGGAGTCC
*
10436808 GCCATAAAGGC-TAATCTTTCATAGTT-A
1 GCCATAAAGGCTTATTCTTTCATAGTTCA
*
10436835 GCCATAAAGGCTTATTCTTTCGTAGTTCA
1 GCCATAAAGGCTTATTCTTTCATAGTTCA
*
10436864 -CCACAAAGGCTTATTCTTTC
1 GCCATAAAGGCTTATTCTTTC
10436884 CTGACATGTT
Statistics
Matches: 44, Mismatches: 3, Indels: 3
0.88 0.06 0.06
Matches are distributed among these distances:
27 11 0.25
28 32 0.73
29 1 0.02
ACGTcount: A:0.28, C:0.22, G:0.14, T:0.36
Consensus pattern (29 bp):
GCCATAAAGGCTTATTCTTTCATAGTTCA
Found at i:10446235 original size:47 final size:47
Alignment explanation
Indices: 10446176--10457427 Score: 21739
Period size: 47 Copynumber: 238.9 Consensus size: 47
10446166 TAGTATGGCG
10446176 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
*
10446223 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGAGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCC
10446272 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
10446319 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
10446366 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
10446413 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
10446460 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
10446507 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
10446554 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
10446601 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
10446648 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
10446695 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
10446742 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
10446789 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
10446836 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
10446883 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
10446930 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
10446977 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
10447024 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
10447071 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
10447118 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
10447165 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
10447212 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
10447259 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
10447306 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
10447353 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
10447400 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
10447447 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
10447494 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
10447541 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
10447588 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
10447635 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
10447682 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
10447729 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
10447776 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
10447823 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
10447870 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
10447917 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
10447964 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
10448011 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
10448058 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
10448105 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
10448152 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
10448199 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
10448246 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
10448293 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
10448340 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
10448387 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
10448434 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
10448481 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
10448528 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
10448575 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
10448622 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
10448669 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
10448716 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
10448763 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
10448810 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
10448857 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
10448904 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
10448951 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
10448998 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
10449045 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
10449092 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
10449139 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
10449186 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
10449233 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
10449280 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
10449327 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
10449374 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
10449421 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
10449468 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
10449515 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
10449562 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
10449609 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
10449656 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
10449703 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
10449750 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
10449797 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
10449844 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
10449891 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
10449938 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
10449985 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
10450032 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
10450079 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
10450126 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
10450173 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
10450220 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
10450267 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
10450314 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
10450361 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
10450408 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
10450455 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
10450502 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
10450549 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
10450596 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
10450643 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
10450690 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
10450737 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
10450784 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
10450831 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
10450878 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
10450925 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
10450972 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
10451019 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
10451066 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
10451113 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
10451160 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
10451207 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
10451254 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
10451301 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
10451348 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
10451395 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
10451442 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
10451489 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
10451536 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
10451583 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
10451630 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
10451677 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
10451724 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
10451771 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
10451818 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
10451865 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
10451912 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
10451959 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
10452006 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
10452053 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
10452100 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
10452147 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
10452194 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
10452241 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
10452288 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
10452335 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
10452382 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
10452429 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
10452476 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
10452523 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
10452570 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
10452617 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
10452664 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
10452711 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
10452758 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
10452805 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
10452852 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
10452899 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
10452946 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
10452993 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
10453040 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
10453087 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
10453134 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
10453181 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
10453228 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
10453275 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
10453322 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
10453369 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
10453416 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
10453463 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
10453510 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
10453557 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
10453604 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
10453651 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
10453698 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
10453745 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
10453792 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
10453839 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
10453886 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
10453933 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
10453980 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
10454027 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
10454074 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
10454121 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
10454168 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
10454215 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
10454262 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
10454309 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
10454356 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
10454403 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
10454450 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
10454497 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
10454544 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
10454591 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
10454638 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
10454685 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
10454732 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
10454779 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
10454826 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
10454873 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
10454920 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
10454967 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
10455014 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
10455061 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
10455108 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
10455155 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
10455202 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
10455249 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
10455296 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
10455343 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
10455390 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
10455437 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
10455484 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
10455531 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
10455578 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
10455625 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
10455672 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
10455719 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
10455766 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
10455813 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
10455860 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
10455907 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
10455954 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
10456001 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
10456048 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
10456095 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
10456142 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
10456189 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
10456236 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
10456283 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
10456330 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
10456377 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
10456424 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
10456471 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
10456518 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
10456565 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
10456612 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCC
*
10456661 TAATAGCCGATGTGATGAATGTGAAAGTGTATGTATATGTGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTA--TATA--TGTGATAAGGCC
* * *
10456712 TAATAGCCGACGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
*
10456759 TAATAGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCC
* * *
10456808 GAATGGCCAATGTGATGAATCTGAAAGTGTATATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCC
* *
10456857 TAATGGCCGATGTGGTGAATGTGAAAGTGTATATATAAGTGATAGGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATAT--GTGATAAGGCC
10456906 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCC
10456955 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCC
10457004 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCC
* * *
10457053 GAATGGCCAATGTGATGAATGTGAAAGTATATATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAG--TGTATATATGTGATAAGGCC
* *
10457102 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGACAGGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
* * * * * * * *
10457149 GAGTGGCCAACGTGATGGATGTGAAAGTGTATAAATGTGACAGGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
* * * * * * * *
10457196 GAGTGGCCAACGTGATGGATGTGAAAGTGTATAAATGTGACAGGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
* * * * * * * *
10457243 GAGTGGCCAACGTGATGGATGTGAAAGTGTATAAATGTGACAGGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
* * * * * * * *
10457290 GAGTGGCCAACGTGATGGATGTGAAAGTGTATAAATGTGACAGGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
* * * * * * * *
10457337 GAGTGGCCAACGTGATGGATGTGAAAGTGTATAAATGTGACAGGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
* * * * * * *
10457384 GAGTGGCCAACGTGATGGATGTGAAAGTGCATAAATGTGATAAG
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAG
10457428 TCCCGAAGGG
Statistics
Matches: 11154, Mismatches: 35, Indels: 32
0.99 0.00 0.00
Matches are distributed among these distances:
47 10704 0.96
49 400 0.04
51 50 0.00
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.30
Consensus pattern (47 bp):
TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
Found at i:10457595 original size:37 final size:37
Alignment explanation
Indices: 10457545--10457680 Score: 272
Period size: 37 Copynumber: 3.7 Consensus size: 37
10457535 CCGAGCTCTA
10457545 AAGACCCGATGACTACGTGTGGAGAGTATGTCCGGGT
1 AAGACCCGATGACTACGTGTGGAGAGTATGTCCGGGT
10457582 AAGACCCGATGACTACGTGTGGAGAGTATGTCCGGGT
1 AAGACCCGATGACTACGTGTGGAGAGTATGTCCGGGT
10457619 AAGACCCGATGACTACGTGTGGAGAGTATGTCCGGGT
1 AAGACCCGATGACTACGTGTGGAGAGTATGTCCGGGT
10457656 AAGACCCGATGACTACGTGTGGAGA
1 AAGACCCGATGACTACGTGTGGAGA
10457681 TGAATCTATT
Statistics
Matches: 99, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 99 1.00
ACGTcount: A:0.26, C:0.19, G:0.35, T:0.21
Consensus pattern (37 bp):
AAGACCCGATGACTACGTGTGGAGAGTATGTCCGGGT
Found at i:10461507 original size:48 final size:48
Alignment explanation
Indices: 10461431--10461703 Score: 160
Period size: 48 Copynumber: 5.7 Consensus size: 48
10461421 TGATATGTGT
* * *
10461431 GCCAGTGTAAGACCATGT-TTGGAGCATGGCATCAGTAATGTTATGAGA
1 GCCAGTGTAAGACCATGTCTAGGA-CATGGCATCAGTAATGATAGGAGA
* * ** * *
10461479 GCCAGTGCAAGACCATGTCCAGGACATGGCATCAGTGTTGATAGGTGC
1 GCCAGTGTAAGACCATGTCTAGGACATGGCATCAGTAATGATAGGAGA
* * * * * * *
10461527 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGT-GTCGATATGTGC
1 GCCAGTGTAAGACCATGTCTAGGACATGGCATCAGTAAT-GATAGGAGA
* * * * * *
10461575 GCTAGTGTAAGACCATGTCTAGTACACGGCAAT-GGCCACAT--TATGAGA
1 GCCAGTGTAAGACCATGTCTAGGACATGGC-ATCAG-TA-ATGATAGGAGA
* * * * * * * *
10461623 GCCAGTGTAAAACTATGTCTGGGACATGGCATCAGCATTGAGATGAAA
1 GCCAGTGTAAGACCATGTCTAGGACATGGCATCAGTAATGATAGGAGA
* * * *
10461671 GCTAGTGTAAGACCATGTTTGGGACATGACATC
1 GCCAGTGTAAGACCATGTCTAGGACATGGCATC
10461704 GGCAATTTAC
Statistics
Matches: 178, Mismatches: 38, Indels: 18
0.76 0.16 0.08
Matches are distributed among these distances:
46 1 0.01
47 5 0.03
48 166 0.93
49 5 0.03
51 1 0.01
ACGTcount: A:0.28, C:0.19, G:0.29, T:0.25
Consensus pattern (48 bp):
GCCAGTGTAAGACCATGTCTAGGACATGGCATCAGTAATGATAGGAGA
Found at i:10466911 original size:20 final size:20
Alignment explanation
Indices: 10466886--10466938 Score: 88
Period size: 20 Copynumber: 2.6 Consensus size: 20
10466876 AACAGGGGTC
*
10466886 ACACACCTGTGTGACTTGGG
1 ACACACCCGTGTGACTTGGG
10466906 ACACACCCGTGTGACTTGGG
1 ACACACCCGTGTGACTTGGG
*
10466926 ACACGCCCGTGTG
1 ACACACCCGTGTG
10466939 GGCAGGTCGT
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 31 1.00
ACGTcount: A:0.19, C:0.30, G:0.30, T:0.21
Consensus pattern (20 bp):
ACACACCCGTGTGACTTGGG
Found at i:10468560 original size:42 final size:43
Alignment explanation
Indices: 10468481--10468561 Score: 101
Period size: 42 Copynumber: 1.9 Consensus size: 43
10468471 TACATGAAAT
* *
10468481 CTCATATCGATGCCAATAGCCTAGCTATAGTTTTACACGAAGC
1 CTCATATCGATGCCAATAGCCTAGATATAGTCTTACACGAAGC
* ** *
10468524 CTCATATCGATGTC-ATTTCCTAGATATGGTCTTACACG
1 CTCATATCGATGCCAATAGCCTAGATATAGTCTTACACG
10468562 TAATCTCGGT
Statistics
Matches: 32, Mismatches: 6, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
42 19 0.59
43 13 0.41
ACGTcount: A:0.27, C:0.25, G:0.16, T:0.32
Consensus pattern (43 bp):
CTCATATCGATGCCAATAGCCTAGATATAGTCTTACACGAAGC
Found at i:10472412 original size:20 final size:20
Alignment explanation
Indices: 10472387--10472427 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
10472377 ATATCTAATT
10472387 TAATTTACTGTTTCATTTGA
1 TAATTTACTGTTTCATTTGA
10472407 TAATTTACTGTTTCATTTGA
1 TAATTTACTGTTTCATTTGA
10472427 T
1 T
10472428 TGTTCTTATT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.24, C:0.10, G:0.10, T:0.56
Consensus pattern (20 bp):
TAATTTACTGTTTCATTTGA
Found at i:10473843 original size:43 final size:41
Alignment explanation
Indices: 10473707--10473861 Score: 150
Period size: 43 Copynumber: 3.6 Consensus size: 41
10473697 ATGTGATTTT
* * *
10473707 CATGTAAGACCACGTTTGGGACGTTGGCCATC-GATTTGAAATTA
1 CATGTAAGACCATGTCTGGGACGTT-G-CATCATATTTG--ATTA
* * * * *
10473751 CGTGTAAGACCATGTCTGGGACATCGGCATCATATTCGATTT
1 CATGTAAGACCATGTCTGGGACGT-TGCATCATATTTGATTA
* *
10473793 TATGTAAGACCATGTTTGGGACAGTTGCATCAATATTTGATTA
1 CATGTAAGACCATGTCTGGGAC-GTTGCATC-ATATTTGATTA
10473836 CATGTAAGACCATGTCTGGGACGTTG
1 CATGTAAGACCATGTCTGGGACGTTG
10473862 GTATTATACG
Statistics
Matches: 90, Mismatches: 17, Indels: 10
0.77 0.15 0.09
Matches are distributed among these distances:
42 31 0.34
43 34 0.38
44 25 0.28
ACGTcount: A:0.26, C:0.17, G:0.25, T:0.32
Consensus pattern (41 bp):
CATGTAAGACCATGTCTGGGACGTTGCATCATATTTGATTA
Found at i:10477377 original size:40 final size:40
Alignment explanation
Indices: 10477084--10477370 Score: 506
Period size: 40 Copynumber: 7.2 Consensus size: 40
10477074 AACCCAAGTA
* *
10477084 CCTTCGGGATTTAG-CCGGATATAG-CAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATG
10477123 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
10477163 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
10477203 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
*
10477243 CCTTCGGGACTTAGCTCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
10477283 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCAC-AAATG
*
10477324 CCTTCGGGACTTAGCTCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
10477364 CCTTCGG
1 CCTTCGG
10477371 ATCTTAGTCC
Statistics
Matches: 240, Mismatches: 5, Indels: 5
0.96 0.02 0.02
Matches are distributed among these distances:
39 13 0.05
40 187 0.78
41 40 0.17
ACGTcount: A:0.27, C:0.27, G:0.23, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
Found at i:10478765 original size:13 final size:13
Alignment explanation
Indices: 10478747--10478772 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
10478737 ATTTTTATTT
10478747 TTAACATAAAATA
1 TTAACATAAAATA
10478760 TTAACATAAAATA
1 TTAACATAAAATA
10478773 ATTATAATAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.62, C:0.08, G:0.00, T:0.31
Consensus pattern (13 bp):
TTAACATAAAATA
Found at i:10487716 original size:323 final size:323
Alignment explanation
Indices: 10487121--10487775 Score: 1296
Period size: 323 Copynumber: 2.0 Consensus size: 323
10487111 AAGATTTCGG
10487121 CTTTT-GC-GACTTTGGCAAAGGTGCTGATGAATAGCAGGTTTGATGAATGGTTTTGAAGAAGAA
1 CTTTTAGCAGACTTTGGCAAAGGTGCTGATGAATAGCAGGTTTGATGAATGGTTTTGAAGAAGAA
10487184 AAATAGAAAAAAAAGAATAGGGGAGGTGATAGTTTCGGCTAGAGAGGAAGAAGAGAGAAAAGAAA
66 AAATAGAAAAAAAAGAATAGGGGAGGTGATAGTTTCGGCTAGAGAGGAAGAAGAGAGAAAAGAAA
10487249 ACCTTGTGATGTCTGAGCAGAAGAGAACGGCACCACTCAATACCCTAGGTGCCGAAATACTAACC
131 ACCTTGTGATGTCTGAGCAGAAGAGAACGGCACCACTCAATACCCTAGGTGCCGAAATACTAACC
10487314 TCAAAACCCCCTGCCGATTTTTCCCTCTTCAATTCCCAAAATCCGGCCAACTCTTAGCCTTTCTC
196 TCAAAACCCCCTGCCGATTTTTCCCTCTTCAATTCCCAAAATCCGGCCAACTCTTAGCCTTTCTC
10487379 CATATCCCTTAAATCTCTCCCTTATCACTCCTTAATCCAAGCGTTTGGACTGATCCAAACTCT
261 CATATCCCTTAAATCTCTCCCTTATCACTCCTTAATCCAAGCGTTTGGACTGATCCAAACTCT
10487442 CTTTTAGCAGACTTTGGCAAAGGTGCTGATGAATAGCAGGTTTGATGAATGGTTTTGAAGAAGAA
1 CTTTTAGCAGACTTTGGCAAAGGTGCTGATGAATAGCAGGTTTGATGAATGGTTTTGAAGAAGAA
10487507 AAATAGAAAAAAAAGAATAGGGGAGGTGATAGTTTCGGCTAGAGAGGAAGAAGAGAGAAAAGAAA
66 AAATAGAAAAAAAAGAATAGGGGAGGTGATAGTTTCGGCTAGAGAGGAAGAAGAGAGAAAAGAAA
10487572 ACCTTGTGATGTCTGAGCAGAAGAGAACGGCACCACTCAATACCCTAGGTGCCGAAATACTAACC
131 ACCTTGTGATGTCTGAGCAGAAGAGAACGGCACCACTCAATACCCTAGGTGCCGAAATACTAACC
10487637 TCAAAACCCCCTGCCGATTTTTCCCTCTTCAATTCCCAAAATCCGGCCAACTCTTAGCCTTTCTC
196 TCAAAACCCCCTGCCGATTTTTCCCTCTTCAATTCCCAAAATCCGGCCAACTCTTAGCCTTTCTC
10487702 CATATCCCTTAAATCTCTCCCTTATCACTCCTTAATCCAAGCGTTTGGACTGATCCAAACTCT
261 CATATCCCTTAAATCTCTCCCTTATCACTCCTTAATCCAAGCGTTTGGACTGATCCAAACTCT
10487765 CTTTTAGCAGA
1 CTTTTAGCAGA
10487776 ATCCACCTGG
Statistics
Matches: 332, Mismatches: 0, Indels: 2
0.99 0.00 0.01
Matches are distributed among these distances:
321 5 0.02
322 2 0.01
323 325 0.98
ACGTcount: A:0.32, C:0.23, G:0.20, T:0.25
Consensus pattern (323 bp):
CTTTTAGCAGACTTTGGCAAAGGTGCTGATGAATAGCAGGTTTGATGAATGGTTTTGAAGAAGAA
AAATAGAAAAAAAAGAATAGGGGAGGTGATAGTTTCGGCTAGAGAGGAAGAAGAGAGAAAAGAAA
ACCTTGTGATGTCTGAGCAGAAGAGAACGGCACCACTCAATACCCTAGGTGCCGAAATACTAACC
TCAAAACCCCCTGCCGATTTTTCCCTCTTCAATTCCCAAAATCCGGCCAACTCTTAGCCTTTCTC
CATATCCCTTAAATCTCTCCCTTATCACTCCTTAATCCAAGCGTTTGGACTGATCCAAACTCT
Found at i:10489493 original size:43 final size:42
Alignment explanation
Indices: 10489338--10489494 Score: 156
Period size: 43 Copynumber: 3.7 Consensus size: 42
10489328 TGTATTTTTG
* *
10489338 TGTAAGACCACATCTGGGACATTGGCCATCA-ATTTGAAATTACG
1 TGTAAGACCACGTCTGGGACATTGG-CATCATATTTG--ATTACA
* * * * *
10489382 TGTAAGACCATGTCTTGGACATCGGCATCTTATTTGATTTCA
1 TGTAAGACCACGTCTGGGACATTGGCATCATATTTGATTACA
* * *
10489424 TGTAAGACC-CTGTCTGAGACAGTGGCATCAATATTTGACTACA
1 TGTAAGACCAC-GTCTGGGACATTGGCATC-ATATTTGATTACA
*
10489467 TGTAAGACCACGTCTGGGACCTTGGCAT
1 TGTAAGACCACGTCTGGGACATTGGCAT
10489495 TGTACGCGCT
Statistics
Matches: 91, Mismatches: 18, Indels: 9
0.77 0.15 0.08
Matches are distributed among these distances:
42 27 0.30
43 37 0.41
44 27 0.30
ACGTcount: A:0.27, C:0.21, G:0.22, T:0.30
Consensus pattern (42 bp):
TGTAAGACCACGTCTGGGACATTGGCATCATATTTGATTACA
Found at i:10498241 original size:28 final size:29
Alignment explanation
Indices: 10498210--10498264 Score: 76
Period size: 29 Copynumber: 1.9 Consensus size: 29
10498200 CACAGGTGAT
10498210 GACACGGCCATGT-CTAGGCCGTGTGAGG
1 GACACGGCCATGTGCTAGGCCGTGTGAGG
* * *
10498238 GACACGGGCGTGTGCTTGGCCGTGTGA
1 GACACGGCCATGTGCTAGGCCGTGTGA
10498265 AATCCCTATA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
28 11 0.48
29 12 0.52
ACGTcount: A:0.15, C:0.24, G:0.42, T:0.20
Consensus pattern (29 bp):
GACACGGCCATGTGCTAGGCCGTGTGAGG
Found at i:10534761 original size:28 final size:28
Alignment explanation
Indices: 10534684--10534797 Score: 133
Period size: 28 Copynumber: 4.1 Consensus size: 28
10534674 AGCATGACTG
* *
10534684 TAAATGTGATTGGGCCTAAT-GACCGTA
1 TAAATGTGATTGGGCCTAATGGGCCATA
* *
10534711 TGAATGTGATTCGGGCCTAATGGGCCACA
1 TAAATGTGATT-GGGCCTAATGGGCCATA
10534740 TAAATGTGATTGGGCCTAATGGGCCATA
1 TAAATGTGATTGGGCCTAATGGGCCATA
* * *
10534768 TGAAA-GAGACTGGGCCTAGTGGGCCATA
1 T-AAATGTGATTGGGCCTAATGGGCCATA
10534796 TA
1 TA
10534798 CAAGTATATG
Statistics
Matches: 75, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
27 11 0.15
28 47 0.63
29 17 0.23
ACGTcount: A:0.28, C:0.17, G:0.30, T:0.25
Consensus pattern (28 bp):
TAAATGTGATTGGGCCTAATGGGCCATA
Found at i:10534783 original size:56 final size:56
Alignment explanation
Indices: 10534684--10534793 Score: 150
Period size: 56 Copynumber: 2.0 Consensus size: 56
10534674 AGCATGACTG
* * * *
10534684 TAAATGTGATTGGGCCTAATGACCGTATGAATGTGATTCGGGCCTAATGGGCCACA
1 TAAATGTGATTGGGCCTAATGACCATATGAAAGAGACTCGGGCCTAATGGGCCACA
* *
10534740 TAAATGTGATTGGGCCTAATGGGCCATATGAAAGAGACT-GGGCCTAGTGGGCCA
1 TAAATGTGATTGGGCCTAAT-GACCATATGAAAGAGACTCGGGCCTAATGGGCCA
10534794 TATACAAGTA
Statistics
Matches: 47, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
56 34 0.72
57 13 0.28
ACGTcount: A:0.27, C:0.17, G:0.31, T:0.25
Consensus pattern (56 bp):
TAAATGTGATTGGGCCTAATGACCATATGAAAGAGACTCGGGCCTAATGGGCCACA
Found at i:10536699 original size:39 final size:39
Alignment explanation
Indices: 10536612--10536768 Score: 167
Period size: 39 Copynumber: 4.0 Consensus size: 39
10536602 CAAATCCAAT
* * * *
10536612 CACCACCAC-AAAGCATGCGGGACTTTAAGCTCAGATATAA
1 CACCAGCACGAAAGCCTTCGGGAC-TT-AGCCCAGATATAA
* *
10536652 TACCAGCAC-AAAGCCTGT-GGGACTTTAGCCCGGATATAA
1 CACCAGCACGAAAGCCT-TCGGGAC-TTAGCCCAGATATAA
* **
10536691 CACCAGCACGAATGCCTTCGGGACTTAGCCTGGATATAA
1 CACCAGCACGAAAGCCTTCGGGACTTAGCCCAGATATAA
*
10536730 CACCAGCACGAATGCCTTCGGGACTTAGCCCAGATATAA
1 CACCAGCACGAAAGCCTTCGGGACTTAGCCCAGATATAA
10536769 TTCTCCATTA
Statistics
Matches: 103, Mismatches: 11, Indels: 7
0.85 0.09 0.06
Matches are distributed among these distances:
39 71 0.69
40 32 0.31
ACGTcount: A:0.32, C:0.28, G:0.21, T:0.19
Consensus pattern (39 bp):
CACCAGCACGAAAGCCTTCGGGACTTAGCCCAGATATAA
Found at i:10538710 original size:26 final size:26
Alignment explanation
Indices: 10538667--10538720 Score: 65
Period size: 27 Copynumber: 2.1 Consensus size: 26
10538657 AAACTAGTAA
* * *
10538667 TAAAGGAAAATTACCT-AAATGCCCC
1 TAAAGGAAAAATAACTAAAATACCCC
10538692 TAAAGGAAAAAATAACTAAAATACCCC
1 TAAAGG-AAAAATAACTAAAATACCCC
10538719 TA
1 TA
10538721 TGCGTTGAGT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
25 6 0.25
26 8 0.33
27 10 0.42
ACGTcount: A:0.52, C:0.20, G:0.09, T:0.19
Consensus pattern (26 bp):
TAAAGGAAAAATAACTAAAATACCCC
Found at i:10550548 original size:98 final size:96
Alignment explanation
Indices: 10550379--10550657 Score: 305
Period size: 98 Copynumber: 2.9 Consensus size: 96
10550369 TGATGTGCGT
* * * *
10550379 GCTAGTGTAAGACCTGTCTGGGACATGGCATC-AGCATTGATAGATGAAAGACTGTGTAAGACTT
1 GCTAGTGTAAGACCTGTCTGGGACATGGCATCGA-CATAGATAG-TGAAAGCCAGTGTAAGACCT
*
10550443 GTCTGGGACATGGCATCGGCTTCAAGATATGCAA
64 GTCTGGGACATGGCATCGGCTTCAAG-TATGAAA
* * *
10550477 GCTAGTGTAAGACCTGTCTGGGATATGGCATCGACACAGATAAGCGAAAGCCAGTGTAAGACCTG
1 GCTAGTGTAAGACCTGTCTGGGACATGGCATCGACATAGAT-AGTGAAAGCCAGTGTAAGACCTG
* * *
10550542 TCTGGGACATGGCATCGACCTTGATGTATGAAA
65 TCTGGGACATGGCATCG-GCTTCAAGTATGAAA
* * *
10550575 G-TCAGTGTACA-ACCTGTCTGGGACATGGCATCGACTTAGAT-GTGAGAGCCAGTGTAAAACCA
1 GCT-AGTGTA-AGACCTGTCTGGGACATGGCATCGACATAGATAGTGAAAGCCAGTGTAAGACC-
* * *
10550637 TGTCTGGAAAATGGCGTCGGC
63 TGTCTGGGACATGGCATCGGC
10550658 ATTGTACCCT
Statistics
Matches: 154, Mismatches: 21, Indels: 14
0.81 0.11 0.07
Matches are distributed among these distances:
96 18 0.12
97 17 0.11
98 110 0.71
99 9 0.06
ACGTcount: A:0.28, C:0.19, G:0.29, T:0.24
Consensus pattern (96 bp):
GCTAGTGTAAGACCTGTCTGGGACATGGCATCGACATAGATAGTGAAAGCCAGTGTAAGACCTGT
CTGGGACATGGCATCGGCTTCAAGTATGAAA
Found at i:10550617 original size:49 final size:48
Alignment explanation
Indices: 10550382--10550643 Score: 266
Period size: 49 Copynumber: 5.4 Consensus size: 48
10550372 TGTGCGTGCT
*
10550382 AGTGTAAGACCTGTCTGGGACATGGCATC-AGCATT-GATAGATGAAAGAC
1 AGTGTAAGACCTGTCTGGGACATGGCATCGA-C-TTAGAT-GATGAAAGCC
* * * * *
10550431 TGTGTAAGACTTGTCTGGGACATGGCATCGGCTTCAAGAT-ATGCAAGCT
1 AGTGTAAGACCTGTCTGGGACATGGCATCGACTT--AGATGATGAAAGCC
* ** * *
10550480 AGTGTAAGACCTGTCTGGGATATGGCATCGACACAGATAAGCGAAAGCC
1 AGTGTAAGACCTGTCTGGGACATGGCATCGACTTAGATGA-TGAAAGCC
*
10550529 AGTGTAAGACCTGTCTGGGACATGGCATCGACCTT-GATGTATGAAAGTC
1 AGTGTAAGACCTGTCTGGGACATGGCATCGA-CTTAGATG-ATGAAAGCC
*
10550578 AGTGTACA-ACCTGTCTGGGACATGGCATCGACTTAGATG-TGAGAGCC
1 AGTGTA-AGACCTGTCTGGGACATGGCATCGACTTAGATGATGAAAGCC
*
10550625 AGTGTAAAACCATGTCTGG
1 AGTGTAAGACC-TGTCTGG
10550644 AAAATGGCGT
Statistics
Matches: 178, Mismatches: 23, Indels: 25
0.79 0.10 0.11
Matches are distributed among these distances:
46 1 0.01
47 19 0.11
48 13 0.07
49 139 0.78
50 3 0.02
51 3 0.02
ACGTcount: A:0.29, C:0.19, G:0.29, T:0.24
Consensus pattern (48 bp):
AGTGTAAGACCTGTCTGGGACATGGCATCGACTTAGATGATGAAAGCC
Found at i:10555247 original size:32 final size:32
Alignment explanation
Indices: 10555211--10555272 Score: 97
Period size: 32 Copynumber: 1.9 Consensus size: 32
10555201 ACACTGGCTT
*
10555211 TCATAATGTCGCCGATGCATGTCCCAGACAGG
1 TCATAATATCGCCGATGCATGTCCCAGACAGG
* *
10555243 TCATAATATGGGCGATGCATGTCCCAGACA
1 TCATAATATCGCCGATGCATGTCCCAGACA
10555273 TGTCTTACAC
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
32 27 1.00
ACGTcount: A:0.27, C:0.26, G:0.24, T:0.23
Consensus pattern (32 bp):
TCATAATATCGCCGATGCATGTCCCAGACAGG
Found at i:10558993 original size:25 final size:25
Alignment explanation
Indices: 10558965--10559016 Score: 95
Period size: 25 Copynumber: 2.1 Consensus size: 25
10558955 GTCCGAAAAG
*
10558965 TAGTCTTTGGTACATCTTGGTCTTT
1 TAGTCTTTGGTACATCTTGCTCTTT
10558990 TAGTCTTTGGTACATCTTGCTCTTT
1 TAGTCTTTGGTACATCTTGCTCTTT
10559015 TA
1 TA
10559017 CTCTCAACTG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.13, C:0.17, G:0.17, T:0.52
Consensus pattern (25 bp):
TAGTCTTTGGTACATCTTGCTCTTT
Found at i:10562929 original size:94 final size:93
Alignment explanation
Indices: 10562663--10562930 Score: 255
Period size: 94 Copynumber: 2.9 Consensus size: 93
10562653 GGTAAAGTGT
* * * *
10562663 CGATGCGATGCCCCAGACATGGTCTTACACCGGCTCTCACATAACCGT-GCCGAGGCCATGTCCC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCT-ACATAA-CGTGGCCGATG-CATGTCCC
*
10562727 AGACATGGTCTTACACTAACACATCTCGTAGC
63 AGACAT-GTCTTACACTAGCACATCTCGTAGC
* ** * * * *
10562759 CGATG-CATGTCCCAGACAT-GTCTTATACTGGCT-TACATCCCGAGGCTGATGCCTGTCCCAGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTACATAACGTGGCCGATGCATGTCCCAGA
10562821 CATGTGC-TACACTAGCAC-TCGTC-TCAATGC
66 CATGT-CTTACACTAGCACATC-TCGT--A-GC
* * *
10562851 TGATGCCATGTCCCAGACATGGTCTTACACTGGCTCT-CATAATGTGGCCGATGCATGTCCGAGA
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTACATAACGTGGCCGATGCATGTCCCAGA
*
10562915 AATGTCTTACACTAGC
66 CATGTCTTACACTAGC
10562931 TCACACAAAT
Statistics
Matches: 139, Mismatches: 23, Indels: 22
0.76 0.12 0.12
Matches are distributed among these distances:
89 3 0.02
90 14 0.10
91 16 0.12
92 15 0.11
93 16 0.12
94 57 0.41
95 13 0.09
96 5 0.04
ACGTcount: A:0.23, C:0.31, G:0.21, T:0.25
Consensus pattern (93 bp):
CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTACATAACGTGGCCGATGCATGTCCCAGA
CATGTCTTACACTAGCACATCTCGTAGC
Found at i:10570350 original size:43 final size:42
Alignment explanation
Indices: 10570227--10570391 Score: 190
Period size: 42 Copynumber: 3.9 Consensus size: 42
10570217 ATTAGGGTTA
* *
10570227 ATGAGACTACGTGTAAGACCATATCTGGGATATGGCATCAAC
1 ATGAGACTACGTGTAAGACCATATCTGGGATATGGCATCGAT
*
10570269 ATGAGACTACGTGTAAGACAATATCTGGGATATGGCATCGAT
1 ATGAGACTACGTGTAAGACCATATCTGGGATATGGCATCGAT
* * * *
10570311 ATGAAACTTCGTGTAAAACCATAGT-TGGGCTATTGGCATCGAT
1 ATGAGACTACGTGTAAGACCATA-TCTGGGATA-TGGCATCGAT
* * * *
10570354 ACGAGA-TCACATATAAGACCATATTTGGGATATGGCAT
1 ATGAGACT-ACGTGTAAGACCATATCTGGGATATGGCAT
10570392 TGGTACGATA
Statistics
Matches: 104, Mismatches: 15, Indels: 8
0.82 0.12 0.06
Matches are distributed among these distances:
42 72 0.69
43 32 0.31
ACGTcount: A:0.33, C:0.16, G:0.24, T:0.27
Consensus pattern (42 bp):
ATGAGACTACGTGTAAGACCATATCTGGGATATGGCATCGAT
Found at i:10570589 original size:15 final size:16
Alignment explanation
Indices: 10570563--10570592 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
10570553 ATGAACCCTT
10570563 AGTAAGGTTATGATTG
1 AGTAAGGTTATGATTG
10570579 AGTAA-GTTATGATT
1 AGTAAGGTTATGATT
10570593 ATAAAATTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 9 0.64
16 5 0.36
ACGTcount: A:0.33, C:0.00, G:0.27, T:0.40
Consensus pattern (16 bp):
AGTAAGGTTATGATTG
Done.