Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr3
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 100348136
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 3062571 characters in sequence are not A, C, G, or T
File 31 of 290
Found at i:10575152 original size:54 final size:54
Alignment explanation
Indices: 10575079--10575182 Score: 190
Period size: 54 Copynumber: 1.9 Consensus size: 54
10575069 ATGGAAGAAA
10575079 AAGAATCATGGCTGTGAAATAAAAAACTTTTGTGAAGTAGTTTTCATGGACACC
1 AAGAATCATGGCTGTGAAATAAAAAACTTTTGTGAAGTAGTTTTCATGGACACC
* *
10575133 AAGAATCATGGTTGTGAAATAAACAACTTTTGTGAAGTAGTTTTCATGGA
1 AAGAATCATGGCTGTGAAATAAAAAACTTTTGTGAAGTAGTTTTCATGGA
10575183 AACCCTAACT
Statistics
Matches: 48, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
54 48 1.00
ACGTcount: A:0.37, C:0.11, G:0.21, T:0.32
Consensus pattern (54 bp):
AAGAATCATGGCTGTGAAATAAAAAACTTTTGTGAAGTAGTTTTCATGGACACC
Found at i:10581243 original size:19 final size:19
Alignment explanation
Indices: 10581219--10581280 Score: 67
Period size: 19 Copynumber: 3.4 Consensus size: 19
10581209 ACATGAGCTA
10581219 GAAAGATATCGGATTGACC
1 GAAAGATATCGGATTGACC
***
10581238 GAAAGATTATTTAATT-A--
1 GAAAGA-TATCGGATTGACC
10581255 GAAAGATATCGGATTGACC
1 GAAAGATATCGGATTGACC
10581274 GAAAGAT
1 GAAAGAT
10581281 TGTTTAATTT
Statistics
Matches: 33, Mismatches: 6, Indels: 8
0.70 0.13 0.17
Matches are distributed among these distances:
16 6 0.18
17 7 0.21
19 14 0.42
20 6 0.18
ACGTcount: A:0.42, C:0.10, G:0.23, T:0.26
Consensus pattern (19 bp):
GAAAGATATCGGATTGACC
Found at i:10581264 original size:36 final size:36
Alignment explanation
Indices: 10581217--10581289 Score: 137
Period size: 36 Copynumber: 2.0 Consensus size: 36
10581207 AGACATGAGC
10581217 TAGAAAGATATCGGATTGACCGAAAGATTATTTAAT
1 TAGAAAGATATCGGATTGACCGAAAGATTATTTAAT
*
10581253 TAGAAAGATATCGGATTGACCGAAAGATTGTTTAAT
1 TAGAAAGATATCGGATTGACCGAAAGATTATTTAAT
10581289 T
1 T
10581290 TTTGCAACAT
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 36 1.00
ACGTcount: A:0.40, C:0.08, G:0.21, T:0.32
Consensus pattern (36 bp):
TAGAAAGATATCGGATTGACCGAAAGATTATTTAAT
Found at i:10581930 original size:15 final size:15
Alignment explanation
Indices: 10581876--10581919 Score: 61
Period size: 15 Copynumber: 2.9 Consensus size: 15
10581866 GTATTGTAAT
*
10581876 TTGGATTTCCTTATC
1 TTGGATTTCTTTATC
* *
10581891 ATAGATTTCTTTATC
1 TTGGATTTCTTTATC
10581906 TTGGATTTCTTTAT
1 TTGGATTTCTTTAT
10581920 TCTGGGTTTC
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
15 24 1.00
ACGTcount: A:0.18, C:0.14, G:0.11, T:0.57
Consensus pattern (15 bp):
TTGGATTTCTTTATC
Found at i:10584371 original size:170 final size:170
Alignment explanation
Indices: 10584089--10584429 Score: 682
Period size: 170 Copynumber: 2.0 Consensus size: 170
10584079 AAATATGATT
10584089 AGTGGACCCATATGAATAATGTGACTAATTAGTAGGCTAAATTTGATATTATAGATCAAGGAAAT
1 AGTGGACCCATATGAATAATGTGACTAATTAGTAGGCTAAATTTGATATTATAGATCAAGGAAAT
10584154 CGAGATTCGGGCTTAAACCGAGAAAATACAAGGTTATGGACTAAAAAGGTAAATTGTCGTTTCTG
66 CGAGATTCGGGCTTAAACCGAGAAAATACAAGGTTATGGACTAAAAAGGTAAATTGTCGTTTCTG
10584219 GATCCGAGGTAAGTTCGTGTGTTAATAATAATGCAATACC
131 GATCCGAGGTAAGTTCGTGTGTTAATAATAATGCAATACC
10584259 AGTGGACCCATATGAATAATGTGACTAATTAGTAGGCTAAATTTGATATTATAGATCAAGGAAAT
1 AGTGGACCCATATGAATAATGTGACTAATTAGTAGGCTAAATTTGATATTATAGATCAAGGAAAT
10584324 CGAGATTCGGGCTTAAACCGAGAAAATACAAGGTTATGGACTAAAAAGGTAAATTGTCGTTTCTG
66 CGAGATTCGGGCTTAAACCGAGAAAATACAAGGTTATGGACTAAAAAGGTAAATTGTCGTTTCTG
10584389 GATCCGAGGTAAGTTCGTGTGTTAATAATAATGCAATACC
131 GATCCGAGGTAAGTTCGTGTGTTAATAATAATGCAATACC
10584429 A
1 A
10584430 TGCTTGAATT
Statistics
Matches: 171, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
170 171 1.00
ACGTcount: A:0.37, C:0.12, G:0.22, T:0.29
Consensus pattern (170 bp):
AGTGGACCCATATGAATAATGTGACTAATTAGTAGGCTAAATTTGATATTATAGATCAAGGAAAT
CGAGATTCGGGCTTAAACCGAGAAAATACAAGGTTATGGACTAAAAAGGTAAATTGTCGTTTCTG
GATCCGAGGTAAGTTCGTGTGTTAATAATAATGCAATACC
Found at i:10587453 original size:20 final size:21
Alignment explanation
Indices: 10587414--10587453 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
10587404 GTTATAATGA
*
10587414 CCACACGGGCGTGTTGCCCTT
1 CCACACGGACGTGTTGCCCTT
10587435 CCACACGGACGTG-TGCCCT
1 CCACACGGACGTGTTGCCCT
10587454 GTTTCAAGGG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 6 0.33
21 12 0.67
ACGTcount: A:0.12, C:0.40, G:0.28, T:0.20
Consensus pattern (21 bp):
CCACACGGACGTGTTGCCCTT
Found at i:10590006 original size:46 final size:46
Alignment explanation
Indices: 10589862--10590128 Score: 218
Period size: 46 Copynumber: 5.7 Consensus size: 46
10589852 TTTGTGTGCT
* ** **
10589862 AGTGTAAGACATGTATGGGACATGCATCGGCCAGATCATGAGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCAAAATGAGAGCC
* * * * *
10589908 AGTGTAAGACCATGTCTGGGACATGGCATCGGCATTAAGACGAGAGCT
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCAAAATGAGAGCC
*
10589956 AGTGTAAGACATGTCTAGGACATGCATCGGCCTCAAAATGTA-AGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCAAAATG-AGAGCC
* * *
10590002 AGTGTAAGACATGTCTGGGACATGCATCGG-CT-AAGA-GATGTGTC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCAAAATGA-GAGCC
* * ** ** *
10590046 AATGTAAGATCATGTCTGGGACATGGCATCAGCACGGATATGTGAGAGCT
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGC-CTCA-AAATGAGAGCC
*
10590096 AGTGTAAGACCATGTCTGGGACACGGCATCGGC
1 AGTGTAAGA-CATGTCTGGGACA-TGCATCGGC
10590129 ATTATGAATA
Statistics
Matches: 178, Mismatches: 30, Indels: 22
0.77 0.13 0.10
Matches are distributed among these distances:
42 1 0.01
43 1 0.01
44 13 0.07
45 16 0.09
46 60 0.34
47 27 0.15
48 26 0.15
49 1 0.01
50 31 0.17
51 2 0.01
ACGTcount: A:0.29, C:0.19, G:0.30, T:0.22
Consensus pattern (46 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCCTCAAAATGAGAGCC
Found at i:10590100 original size:94 final size:93
Alignment explanation
Indices: 10589859--10590130 Score: 292
Period size: 94 Copynumber: 2.9 Consensus size: 93
10589849 TTATTTGTGT
* *
10589859 GCTAGTGTAAGACATGTATGGGACATGCATCGGCCAGATCA--TGAGAGCCAGTGTAAGACCATG
1 GCTAATGTAAGACATGTCTGGGACATGCATCGGCCAGAT-ATGTGAGAGCCAGTGTAAGACCATG
10589922 TCTGGGACATGGCATCGGCATTAAGACGAGA
65 TCTGGGACAT-GCATCGGCA-TAAGACGAGA
* * *
10589953 GCTAGTGTAAGACATGTCTAGGACATGCATCGGCCTCA-AAATGT-A-AGCCAGTGTAAGA-CAT
1 GCTAATGTAAGACATGTCTGGGACATGCATCGG-C-CAGATATGTGAGAGCCAGTGTAAGACCAT
*
10590014 GTCTGGGACATGCATCGGC-TAAGA-GATGT
64 GTCTGGGACATGCATCGGCATAAGACGA-GA
* * *
10590043 G-TCAATGTAAGATCATGTCTGGGACATGGCATCAGCACGGATATGTGAGAGCTAGTGTAAGACC
1 GCT-AATGTAAGA-CATGTCTGGGACAT-GCATCGGC-CAGATATGTGAGAGCCAGTGTAAGACC
*
10590107 ATGTCTGGGACACGGCATCGGCAT
62 ATGTCTGGGACA-TGCATCGGCAT
10590131 TATGAATATC
Statistics
Matches: 152, Mismatches: 12, Indels: 25
0.80 0.06 0.13
Matches are distributed among these distances:
89 3 0.02
90 15 0.10
91 15 0.10
92 19 0.12
93 15 0.10
94 57 0.38
95 16 0.11
96 11 0.07
97 1 0.01
ACGTcount: A:0.29, C:0.19, G:0.30, T:0.22
Consensus pattern (93 bp):
GCTAATGTAAGACATGTCTGGGACATGCATCGGCCAGATATGTGAGAGCCAGTGTAAGACCATGT
CTGGGACATGCATCGGCATAAGACGAGA
Found at i:10592001 original size:39 final size:40
Alignment explanation
Indices: 10591958--10592125 Score: 148
Period size: 40 Copynumber: 4.2 Consensus size: 40
10591948 CTCGTTCAAG
* * * *
10591958 TGCCTTCGGGACATAGCCCGG-TTATAGTAACTCATAC-AA
1 TGCCTTCGGGACTTAACCCGGATTATA-AAACTCACACGAA
* *
10591997 TGCCTTCGGGACTTAACCCGGATTTTAAAACTCGCACGAA
1 TGCCTTCGGGACTTAACCCGGATTATAAAACTCACACGAA
* * *
10592037 TGCCTTCGGGACTTAACCCGGAATTAGT--ATCTCGCACAAA
1 TGCCTTCGGGACTTAACCCGG-ATTA-TAAAACTCACACGAA
* * * *
10592077 GGCCTTCGGGACTTAACCCGGAATTA-ATAACTCGCACAAA
1 TGCCTTCGGGACTTAACCCGG-ATTATAAAACTCACACGAA
10592117 TGCCTTCGG
1 TGCCTTCGG
10592126 ATCTTAGTCC
Statistics
Matches: 111, Mismatches: 12, Indels: 11
0.83 0.09 0.08
Matches are distributed among these distances:
39 26 0.23
40 81 0.73
41 3 0.03
42 1 0.01
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.24
Consensus pattern (40 bp):
TGCCTTCGGGACTTAACCCGGATTATAAAACTCACACGAA
Found at i:10592109 original size:80 final size:80
Alignment explanation
Indices: 10591993--10592178 Score: 229
Period size: 80 Copynumber: 2.3 Consensus size: 80
10591983 AGTAACTCAT
* * *
10591993 ACAATGCCTTCGGGACTTAACCCGGATTTTAAAACTCGCACGAATGCCTTCGGGA-CTTAACCCG
1 ACAAAGCCTTCGGGACTTAACCCGGATATTAAAACTCGCACAAATGCCTTC-GGATCTTAACCCG
*
10592057 GA-ATTAGT-A-TCTCGC
65 GATA-TAGTCACT-TAGC
**
10592072 ACAAAGGCCTTCGGGACTTAACCCGGA-ATTAATAACTCGCACAAATGCCTTCGGATCTTAGTCC
1 ACAAA-GCCTTCGGGACTTAACCCGGATATTAA-AACTCGCACAAATGCCTTCGGATCTTAACCC
10592136 GGATATAGTCACTTAGC
64 GGATATAGTCACTTAGC
*
10592153 ACAAAGCCTTCGGGACTTAGCCCGGA
1 ACAAAGCCTTCGGGACTTAACCCGGA
10592179 CAGCATTCAA
Statistics
Matches: 94, Mismatches: 7, Indels: 11
0.84 0.06 0.10
Matches are distributed among these distances:
79 11 0.12
80 72 0.77
81 10 0.11
82 1 0.01
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.24
Consensus pattern (80 bp):
ACAAAGCCTTCGGGACTTAACCCGGATATTAAAACTCGCACAAATGCCTTCGGATCTTAACCCGG
ATATAGTCACTTAGC
Found at i:10592138 original size:40 final size:40
Alignment explanation
Indices: 10591995--10592178 Score: 205
Period size: 40 Copynumber: 4.6 Consensus size: 40
10591985 TAACTCATAC
* *
10591995 AATGCCTTCGGGACTTAACCCGGATTTTAA-AACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGA-ATTAATAACTCGCACA
* *
10592035 AATGCCTTCGGGACTTAACCCGGAATTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
*
10592075 AAGGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
1 AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
** * * *
10592115 AATGCCTTC-GGATCTTAGTCCGG-ATATAGTCACTTAGCACA
1 AATGCCTTCGGGA-CTTAACCCGGAAT-TAATAAC-TCGCACA
*
10592156 AA-GCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
10592179 CAGCATTCAA
Statistics
Matches: 124, Mismatches: 14, Indels: 11
0.83 0.09 0.07
Matches are distributed among these distances:
39 8 0.06
40 105 0.85
41 11 0.09
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.24
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
Found at i:10597920 original size:42 final size:42
Alignment explanation
Indices: 10597872--10598036 Score: 224
Period size: 42 Copynumber: 3.9 Consensus size: 42
10597862 ATTAGGGTTA
* *
10597872 ATGAGACTACGTGTAAGACCATATCTGAGATATGGCATCAAC
1 ATGAGACTACGTGTAAGACCATATCTGGGATATGGCATCAAT
*
10597914 ATGAGACTACGTGTAAGACCATATCTGGGATATGGCATCGAT
1 ATGAGACTACGTGTAAGACCATATCTGGGATATGGCATCAAT
* * * * *
10597956 ATGAAACTTCGTGTATGACCATAGCTGGGCTATTGGCATCAAT
1 ATGAGACTACGTGTAAGACCATATCTGGGATA-TGGCATCAAT
*
10597999 ATGAGA-TCACATGTAAGACCATATCTGGGATATGGCAT
1 ATGAGACT-ACGTGTAAGACCATATCTGGGATATGGCAT
10598037 TGGTACGATA
Statistics
Matches: 106, Mismatches: 15, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
42 73 0.69
43 33 0.31
ACGTcount: A:0.32, C:0.18, G:0.24, T:0.27
Consensus pattern (42 bp):
ATGAGACTACGTGTAAGACCATATCTGGGATATGGCATCAAT
Found at i:10598003 original size:85 final size:84
Alignment explanation
Indices: 10597872--10598036 Score: 233
Period size: 85 Copynumber: 2.0 Consensus size: 84
10597862 ATTAGGGTTA
* * *
10597872 ATGAGACTACGTGTAAGACCATATCTGAGATATGGCATCAACATGAGA-CTACGTGTAAGACCAT
1 ATGAAACTACGTGTAAGACCATAGCTGAGATATGGCATCAACATGAGATC-ACATGTAAGACCAT
10597936 ATCTGGGATATGGCATCGAT
65 ATCTGGGATATGGCATCGAT
* * * * *
10597956 ATGAAACTTCGTGTATGACCATAGCTGGGCTATTGGCATCAATATGAGATCACATGTAAGACCAT
1 ATGAAACTACGTGTAAGACCATAGCTGAGATA-TGGCATCAACATGAGATCACATGTAAGACCAT
10598021 ATCTGGGATATGGCAT
65 ATCTGGGATATGGCAT
10598037 TGGTACGATA
Statistics
Matches: 71, Mismatches: 8, Indels: 3
0.87 0.10 0.04
Matches are distributed among these distances:
84 26 0.37
85 44 0.62
86 1 0.01
ACGTcount: A:0.32, C:0.18, G:0.24, T:0.27
Consensus pattern (84 bp):
ATGAAACTACGTGTAAGACCATAGCTGAGATATGGCATCAACATGAGATCACATGTAAGACCATA
TCTGGGATATGGCATCGAT
Found at i:10610815 original size:27 final size:27
Alignment explanation
Indices: 10610785--10610962 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
10610775 ATATTGAGTC
* * * *
10610785 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
10610812 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
10610839 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
10610867 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
10610894 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
10610921 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
10610948 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
10610963 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:10610924 original size:82 final size:81
Alignment explanation
Indices: 10610806--10610961 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
10610796 TGCTATATAA
* *
10610806 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
10610871 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
10610888 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
10610952 CACTTAGTGC
65 CACTTAGTGC
10610962 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:10614982 original size:15 final size:15
Alignment explanation
Indices: 10614962--10614996 Score: 70
Period size: 15 Copynumber: 2.3 Consensus size: 15
10614952 ATAGACGGAT
10614962 ATCTTTGTTTAATCC
1 ATCTTTGTTTAATCC
10614977 ATCTTTGTTTAATCC
1 ATCTTTGTTTAATCC
10614992 ATCTT
1 ATCTT
10614997 CAAACCTTTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.20, C:0.20, G:0.06, T:0.54
Consensus pattern (15 bp):
ATCTTTGTTTAATCC
Found at i:10617055 original size:43 final size:42
Alignment explanation
Indices: 10616966--10617104 Score: 113
Period size: 43 Copynumber: 3.2 Consensus size: 42
10616956 CCCGGACGTG
* * ** * *
10616966 GTCTTACATGT-AATTCAATATTGATGCCTCTATCCCAAACAGC
1 GTCTTACACGTAAATTCAATA-CGATGCCGATGTCCCAGACA-C
*
10617009 GTCTTATACG-AAA-TCAGATACGATGCCGATGTCCCCAGACATC
1 GTCTTACACGTAAATTCA-ATACGATGCCGATGT-CCCAGACA-C
* *
10617052 GTCTTACACGTAAATTTCAATTCGATGCCTATGTCCCAGACAC
1 GTCTTACACGTAAA-TTCAATACGATGCCGATGTCCCAGACAC
10617095 GGTCTTACAC
1 -GTCTTACAC
10617105 AATAATTCAG
Statistics
Matches: 78, Mismatches: 11, Indels: 13
0.76 0.11 0.13
Matches are distributed among these distances:
42 11 0.14
43 31 0.40
44 20 0.26
45 13 0.17
46 3 0.04
ACGTcount: A:0.29, C:0.27, G:0.15, T:0.29
Consensus pattern (42 bp):
GTCTTACACGTAAATTCAATACGATGCCGATGTCCCAGACAC
Found at i:10624706 original size:9 final size:9
Alignment explanation
Indices: 10624692--10624716 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
10624682 AACCATTCAA
10624692 TCATTCATT
1 TCATTCATT
10624701 TCATTCATT
1 TCATTCATT
10624710 TCATTCA
1 TCATTCA
10624717 ATTTAATCCA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.24, C:0.24, G:0.00, T:0.52
Consensus pattern (9 bp):
TCATTCATT
Found at i:10627145 original size:17 final size:17
Alignment explanation
Indices: 10627123--10627155 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
10627113 ATTCTTTGAG
10627123 AATTGCC-ACAGCATTTC
1 AATTGCCTA-AGCATTTC
10627140 AATTGCCTAAGCATTT
1 AATTGCCTAAGCATTT
10627156 TTTTTAATTC
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
17 14 0.93
18 1 0.07
ACGTcount: A:0.30, C:0.24, G:0.12, T:0.33
Consensus pattern (17 bp):
AATTGCCTAAGCATTTC
Found at i:10628106 original size:10 final size:9
Alignment explanation
Indices: 10628081--10628105 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
10628071 TCTTTACTAA
10628081 TTTAAAATT
1 TTTAAAATT
10628090 TTTAAAATT
1 TTTAAAATT
10628099 TTTAAAA
1 TTTAAAA
10628106 AATTTAAATA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (9 bp):
TTTAAAATT
Found at i:10629352 original size:22 final size:22
Alignment explanation
Indices: 10629327--10629370 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
10629317 TAGTCTTATA
10629327 ATAAATTATTAATATAATAAAT
1 ATAAATTATTAATATAATAAAT
* * *
10629349 ATAATTTATTATTTTAATAAAT
1 ATAAATTATTAATATAATAAAT
10629371 TATTTAATAT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (22 bp):
ATAAATTATTAATATAATAAAT
Found at i:10629406 original size:13 final size:14
Alignment explanation
Indices: 10629390--10629431 Score: 50
Period size: 13 Copynumber: 2.9 Consensus size: 14
10629380 TTTCAATTTT
10629390 ATTTTAATAATA-A
1 ATTTTAATAATATA
*
10629403 ATTTTAAAAATAATA
1 ATTTTAATAAT-ATA
10629418 ATTTTAAATAATAT
1 ATTTT-AATAATAT
10629432 TATTAACATA
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
13 10 0.42
14 1 0.04
15 8 0.33
16 5 0.21
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (14 bp):
ATTTTAATAATATA
Found at i:10629416 original size:16 final size:16
Alignment explanation
Indices: 10629394--10629430 Score: 58
Period size: 16 Copynumber: 2.3 Consensus size: 16
10629384 AATTTTATTT
10629394 TAATAATAAATTTTAAA
1 TAATAAT-AATTTTAAA
10629411 -AATAATAATTTTAAA
1 TAATAATAATTTTAAA
10629426 TAATA
1 TAATA
10629431 TTATTAACAT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
15 9 0.47
16 10 0.53
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (16 bp):
TAATAATAATTTTAAA
Found at i:10629483 original size:15 final size:15
Alignment explanation
Indices: 10629463--10629519 Score: 51
Period size: 15 Copynumber: 3.5 Consensus size: 15
10629453 ATTCAATATT
10629463 AATATTTTAATAATA
1 AATATTTTAATAATA
*
10629478 AATATTTATTACAATTATA
1 AATA-TT-TT--AATAATA
*
10629497 AATATATTAATAATA
1 AATATTTTAATAATA
*
10629512 AATGTTTT
1 AATATTTT
10629520 GTATTATAAA
Statistics
Matches: 33, Mismatches: 5, Indels: 8
0.72 0.11 0.17
Matches are distributed among these distances:
15 16 0.48
16 2 0.06
17 4 0.12
18 1 0.03
19 10 0.30
ACGTcount: A:0.49, C:0.02, G:0.02, T:0.47
Consensus pattern (15 bp):
AATATTTTAATAATA
Found at i:10630054 original size:10 final size:9
Alignment explanation
Indices: 10630029--10630053 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
10630019 TCTTTACTAA
10630029 TTTAAAATT
1 TTTAAAATT
10630038 TTTAAAATT
1 TTTAAAATT
10630047 TTTAAAA
1 TTTAAAA
10630054 AATTTAAATA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (9 bp):
TTTAAAATT
Found at i:10631300 original size:22 final size:22
Alignment explanation
Indices: 10631275--10631318 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
10631265 TAGTCTTATA
10631275 ATAAATTATTAATATAATAAAT
1 ATAAATTATTAATATAATAAAT
* * *
10631297 ATAATTTATTATTTTAATAAAT
1 ATAAATTATTAATATAATAAAT
10631319 TATTTAATAT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (22 bp):
ATAAATTATTAATATAATAAAT
Found at i:10631354 original size:13 final size:14
Alignment explanation
Indices: 10631338--10631379 Score: 50
Period size: 13 Copynumber: 2.9 Consensus size: 14
10631328 TTTCAATTTT
10631338 ATTTTAATAATA-A
1 ATTTTAATAATATA
*
10631351 ATTTTAAAAATAATA
1 ATTTTAATAAT-ATA
10631366 ATTTTAAATAATAT
1 ATTTT-AATAATAT
10631380 TATTAACATA
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
13 10 0.42
14 1 0.04
15 8 0.33
16 5 0.21
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (14 bp):
ATTTTAATAATATA
Found at i:10631364 original size:16 final size:16
Alignment explanation
Indices: 10631342--10631378 Score: 58
Period size: 16 Copynumber: 2.3 Consensus size: 16
10631332 AATTTTATTT
10631342 TAATAATAAATTTTAAA
1 TAATAAT-AATTTTAAA
10631359 -AATAATAATTTTAAA
1 TAATAATAATTTTAAA
10631374 TAATA
1 TAATA
10631379 TTATTAACAT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
15 9 0.47
16 10 0.53
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (16 bp):
TAATAATAATTTTAAA
Found at i:10631431 original size:15 final size:15
Alignment explanation
Indices: 10631411--10631467 Score: 51
Period size: 15 Copynumber: 3.5 Consensus size: 15
10631401 ATTCAATATT
10631411 AATATTTTAATAATA
1 AATATTTTAATAATA
*
10631426 AATATTTATTACAATTATA
1 AATA-TT-TT--AATAATA
*
10631445 AATATATTAATAATA
1 AATATTTTAATAATA
*
10631460 AATGTTTT
1 AATATTTT
10631468 GTATTATAAA
Statistics
Matches: 33, Mismatches: 5, Indels: 8
0.72 0.11 0.17
Matches are distributed among these distances:
15 16 0.48
16 2 0.06
17 4 0.12
18 1 0.03
19 10 0.30
ACGTcount: A:0.49, C:0.02, G:0.02, T:0.47
Consensus pattern (15 bp):
AATATTTTAATAATA
Found at i:10631944 original size:14 final size:14
Alignment explanation
Indices: 10631925--10631963 Score: 51
Period size: 14 Copynumber: 2.8 Consensus size: 14
10631915 TTAGAAAAGT
10631925 AAATCATTTTCCAG
1 AAATCATTTTCCAG
* *
10631939 AAATCATTTTTCGG
1 AAATCATTTTCCAG
*
10631953 AAGTCATTTTC
1 AAATCATTTTC
10631964 AGTGAAACAA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.31, C:0.18, G:0.10, T:0.41
Consensus pattern (14 bp):
AAATCATTTTCCAG
Found at i:10636562 original size:23 final size:23
Alignment explanation
Indices: 10636515--10636562 Score: 71
Period size: 24 Copynumber: 2.1 Consensus size: 23
10636505 TAATATCAAT
*
10636515 TACATATATTACATTTGTACACA
1 TACATATATTACATTTGCACACA
10636538 TACATATTATTACATTTGCAC-CA
1 TACATA-TATTACATTTGCACACA
10636561 TA
1 TA
10636563 TCATCCTCAT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
23 10 0.43
24 13 0.57
ACGTcount: A:0.38, C:0.19, G:0.04, T:0.40
Consensus pattern (23 bp):
TACATATATTACATTTGCACACA
Found at i:10636828 original size:13 final size:13
Alignment explanation
Indices: 10636802--10636839 Score: 51
Period size: 13 Copynumber: 3.0 Consensus size: 13
10636792 TAATGTTAAT
10636802 TAATTAT-TATAA
1 TAATTATATATAA
10636814 TAATTATATATAA
1 TAATTATATATAA
* *
10636827 TATTTAAATATAA
1 TAATTATATATAA
10636840 CCTAAATAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
12 7 0.30
13 16 0.70
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (13 bp):
TAATTATATATAA
Found at i:10638815 original size:21 final size:21
Alignment explanation
Indices: 10638774--10638815 Score: 50
Period size: 21 Copynumber: 2.0 Consensus size: 21
10638764 GTTAACAAAC
* *
10638774 TATATGATAATTTAAATAATA
1 TATATGATAATTGAAAGAATA
10638795 TATAT-ATAATATGAAAGAATA
1 TATATGATAAT-TGAAAGAATA
10638816 ATAATGAAGA
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
20 5 0.28
21 13 0.72
ACGTcount: A:0.55, C:0.00, G:0.07, T:0.38
Consensus pattern (21 bp):
TATATGATAATTGAAAGAATA
Found at i:10641078 original size:36 final size:36
Alignment explanation
Indices: 10640999--10641080 Score: 128
Period size: 36 Copynumber: 2.3 Consensus size: 36
10640989 TCAGTTCATT
* *
10640999 GATTTACAATCATGAACAGTTCATTAAGAGTTCACC
1 GATTTACGATCATGAACAATTCATTAAGAGTTCACC
* *
10641035 AATTTACGATCATGAACAATTCATTGAGAGTTCACC
1 GATTTACGATCATGAACAATTCATTAAGAGTTCACC
10641071 GATTTACGAT
1 GATTTACGAT
10641081 TACAACTCCA
Statistics
Matches: 41, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
36 41 1.00
ACGTcount: A:0.35, C:0.18, G:0.15, T:0.32
Consensus pattern (36 bp):
GATTTACGATCATGAACAATTCATTAAGAGTTCACC
Found at i:10643717 original size:24 final size:24
Alignment explanation
Indices: 10643685--10643733 Score: 98
Period size: 24 Copynumber: 2.0 Consensus size: 24
10643675 TCTGATAATA
10643685 ACTGGGGTTATTATAACACTTGTC
1 ACTGGGGTTATTATAACACTTGTC
10643709 ACTGGGGTTATTATAACACTTGTC
1 ACTGGGGTTATTATAACACTTGTC
10643733 A
1 A
10643734 ATATTTTTTG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.27, C:0.16, G:0.20, T:0.37
Consensus pattern (24 bp):
ACTGGGGTTATTATAACACTTGTC
Found at i:10643948 original size:21 final size:21
Alignment explanation
Indices: 10643924--10643969 Score: 67
Period size: 21 Copynumber: 2.2 Consensus size: 21
10643914 AATAATATAG
*
10643924 ATTTAATAAATATAGAA-AAAA
1 ATTTAATAAATAGA-AAGAAAA
10643945 ATTTAATAAATAGAAAGAAAA
1 ATTTAATAAATAGAAAGAAAA
10643966 ATTT
1 ATTT
10643970 TGAACTGTTA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 2 0.09
21 21 0.91
ACGTcount: A:0.63, C:0.00, G:0.07, T:0.30
Consensus pattern (21 bp):
ATTTAATAAATAGAAAGAAAA
Found at i:10643959 original size:19 final size:22
Alignment explanation
Indices: 10643924--10643965 Score: 63
Period size: 19 Copynumber: 2.0 Consensus size: 22
10643914 AATAATATAG
10643924 ATTTAATAAATATAGAAA-AAA
1 ATTTAATAAATATAGAAAGAAA
10643945 ATTTAAT-AA-ATAGAAAGAAA
1 ATTTAATAAATATAGAAAGAAA
10643965 A
1 A
10643966 ATTTTGAACT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
19 7 0.35
20 6 0.30
21 7 0.35
ACGTcount: A:0.67, C:0.00, G:0.07, T:0.26
Consensus pattern (22 bp):
ATTTAATAAATATAGAAAGAAA
Found at i:10646734 original size:19 final size:20
Alignment explanation
Indices: 10646702--10646746 Score: 83
Period size: 19 Copynumber: 2.3 Consensus size: 20
10646692 CGAAAAATAA
10646702 TTTCTGGAAAATGATTTACT
1 TTTCTGGAAAATGATTTACT
10646722 TTTCTGG-AAATGATTTACT
1 TTTCTGGAAAATGATTTACT
10646741 TTTCTG
1 TTTCTG
10646747 ATGTTTGGAT
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
19 18 0.72
20 7 0.28
ACGTcount: A:0.24, C:0.11, G:0.16, T:0.49
Consensus pattern (20 bp):
TTTCTGGAAAATGATTTACT
Found at i:10649665 original size:170 final size:171
Alignment explanation
Indices: 10649404--10649743 Score: 458
Period size: 170 Copynumber: 2.0 Consensus size: 171
10649394 AGGAAGATTT
*
10649404 GAGCGAAACGAAACAGCAGCCCTGAGAAGAGAAGATATGCGACAGACACTAAGAAAAAACGAAAA
1 GAGCCAAACGAAACAGCAGCCCTGAGAAGAGAAGATATGCGACAGACACTAAGAAAAAACGAAAA
10649469 CAAAAGATGAAGAACAAAAGAAGTAGAAGGAGGAAAGTTACCTGGATGAAGAAGAATGAAGATGA
66 CAAAAGATGAAGAACAAAAGAAGTAGAAGGAGGAAAG-TACCTGGATGAAGAAG---GAAGATGA
*
10649534 AGAATG-AC-T-AGGAAAGATTGGTGAAAGTTGGAAAATGTCACA
127 AGAACGAACATGAGGAAAGATTGGTGAAAGTTGGAAAATGTCACA
* * * *
10649576 GAGCCAAATGAAACAGCAGTCCTGAGAAGAGAAGATATGCGA-A-A-GCTAAGGAAAAAAGGAAA
1 GAGCCAAACGAAACAGCAGCCCTGAGAAGAGAAGATATGCGACAGACACTAA-GAAAAAACGAAA
** * * *
10649638 TTAAAAGATGAAGAACAGAAGAAGTAGAATGAGGAAAGTACCTGGATGAAGAAGGAAGATTAAGA
65 ACAAAAGATGAAGAACAAAAGAAGTAGAAGGAGGAAAGTACCTGGATGAAGAAGGAAGATGAAGA
* *
10649703 ACGACACAATGGGGAAAGATTGGTGAGAGTTGGAAAATGTC
130 ACGA-AC-ATGAGGAAAGATTGGTGAAAGTTGGAAAATGTC
10649744 TTACAGAAAA
Statistics
Matches: 149, Mismatches: 13, Indels: 13
0.85 0.07 0.07
Matches are distributed among these distances:
166 12 0.08
168 2 0.01
169 20 0.13
170 47 0.32
171 29 0.19
172 39 0.26
ACGTcount: A:0.48, C:0.10, G:0.29, T:0.13
Consensus pattern (171 bp):
GAGCCAAACGAAACAGCAGCCCTGAGAAGAGAAGATATGCGACAGACACTAAGAAAAAACGAAAA
CAAAAGATGAAGAACAAAAGAAGTAGAAGGAGGAAAGTACCTGGATGAAGAAGGAAGATGAAGAA
CGAACATGAGGAAAGATTGGTGAAAGTTGGAAAATGTCACA
Found at i:10653053 original size:16 final size:16
Alignment explanation
Indices: 10653034--10653075 Score: 50
Period size: 16 Copynumber: 2.6 Consensus size: 16
10653024 AAATATGTAC
10653034 AATATTATAA-TGTAAA
1 AATATTA-AACTGTAAA
10653050 AATATTAAACTGTAAA
1 AATATTAAACTGTAAA
*
10653066 TAAAATTAAA
1 -AATATTAAA
10653076 TTTAAACACA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
15 2 0.09
16 13 0.57
17 8 0.35
ACGTcount: A:0.60, C:0.02, G:0.05, T:0.33
Consensus pattern (16 bp):
AATATTAAACTGTAAA
Found at i:10653381 original size:11 final size:11
Alignment explanation
Indices: 10653365--10653394 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
10653355 AATGATAAAA
10653365 GTTAATTTGAT
1 GTTAATTTGAT
10653376 GTTAATTTGAT
1 GTTAATTTGAT
*
10653387 ATTAATTT
1 GTTAATTT
10653395 AGATTAATGA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.30, C:0.00, G:0.13, T:0.57
Consensus pattern (11 bp):
GTTAATTTGAT
Found at i:10653501 original size:16 final size:16
Alignment explanation
Indices: 10653469--10653511 Score: 52
Period size: 16 Copynumber: 2.6 Consensus size: 16
10653459 ATGTGTCTAA
*
10653469 ATTTAATTTTATTTAC
1 ATTTAATATTATTTAC
10653485 AGTTTAATATT-TTTAC
1 A-TTTAATATTATTTAC
10653501 ATTATAATATT
1 ATT-TAATATT
10653512 GTATATATTT
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
15 2 0.08
16 14 0.58
17 8 0.33
ACGTcount: A:0.35, C:0.05, G:0.02, T:0.58
Consensus pattern (16 bp):
ATTTAATATTATTTAC
Found at i:10654346 original size:27 final size:23
Alignment explanation
Indices: 10654295--10654341 Score: 94
Period size: 23 Copynumber: 2.0 Consensus size: 23
10654285 ATTTTTTGAT
10654295 TTAGTATATATCAAATTAATTTA
1 TTAGTATATATCAAATTAATTTA
10654318 TTAGTATATATCAAATTAATTTA
1 TTAGTATATATCAAATTAATTTA
10654341 T
1 T
10654342 CTATTTTTTA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.43, C:0.04, G:0.04, T:0.49
Consensus pattern (23 bp):
TTAGTATATATCAAATTAATTTA
Found at i:10655613 original size:3 final size:3
Alignment explanation
Indices: 10655605--10655680 Score: 66
Period size: 3 Copynumber: 24.7 Consensus size: 3
10655595 GGTAAGGCTC
* *
10655605 CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CCATT ATT CATT CCTT TTT
1 CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT -C-TT CTT C-TT -CTT CTT
* *
10655654 CTT CTT C-T GTT CTT CAT CTT C-T CTT CT
1 CTT CTT CTT CTT CTT CTT CTT CTT CTT CT
10655681 CAGCATATTC
Statistics
Matches: 59, Mismatches: 8, Indels: 12
0.75 0.10 0.15
Matches are distributed among these distances:
2 3 0.05
3 48 0.81
4 5 0.08
5 3 0.05
ACGTcount: A:0.05, C:0.32, G:0.01, T:0.62
Consensus pattern (3 bp):
CTT
Found at i:10658492 original size:14 final size:15
Alignment explanation
Indices: 10658470--10658546 Score: 52
Period size: 14 Copynumber: 5.0 Consensus size: 15
10658460 CAATCAAACA
10658470 CCAGAAAAT-ATTTT
1 CCAGAAAATCATTTT
*
10658484 CCAGTAAATCATTTT
1 CCAGAAAATCATTTT
*
10658499 ACAGAAAAGTAAAACATTTT
1 CCAGAAAA-T----CATTTT
10658519 CCAG-AAATCATTTT
1 CCAGAAAATCATTTT
* *
10658533 ACGGAAAA-CATTTT
1 CCAGAAAATCATTTT
10658547 ACTACCAATC
Statistics
Matches: 50, Mismatches: 6, Indels: 14
0.71 0.09 0.20
Matches are distributed among these distances:
14 22 0.44
15 14 0.28
16 1 0.02
18 1 0.02
19 3 0.06
20 9 0.18
ACGTcount: A:0.43, C:0.16, G:0.09, T:0.32
Consensus pattern (15 bp):
CCAGAAAATCATTTT
Found at i:10658511 original size:20 final size:20
Alignment explanation
Indices: 10658486--10658525 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
10658476 AATATTTTCC
*
10658486 AGTAAATCATTTTACAGAAA
1 AGTAAAACATTTTACAGAAA
*
10658506 AGTAAAACATTTTCCAGAAA
1 AGTAAAACATTTTACAGAAA
10658526 TCATTTTACG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.50, C:0.12, G:0.10, T:0.28
Consensus pattern (20 bp):
AGTAAAACATTTTACAGAAA
Found at i:10658531 original size:34 final size:35
Alignment explanation
Indices: 10658474--10658540 Score: 109
Period size: 34 Copynumber: 1.9 Consensus size: 35
10658464 CAAACACCAG
*
10658474 AAAATATTTTCCAGTAAATCATTTTACAGAAAAGT
1 AAAACATTTTCCAGTAAATCATTTTACAGAAAAGT
*
10658509 AAAACATTTTCCAG-AAATCATTTTACGGAAAA
1 AAAACATTTTCCAGTAAATCATTTTACAGAAAA
10658541 CATTTTACTA
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
34 17 0.57
35 13 0.43
ACGTcount: A:0.46, C:0.13, G:0.09, T:0.31
Consensus pattern (35 bp):
AAAACATTTTCCAGTAAATCATTTTACAGAAAAGT
Found at i:10658547 original size:14 final size:14
Alignment explanation
Indices: 10658509--10658548 Score: 53
Period size: 14 Copynumber: 2.9 Consensus size: 14
10658499 ACAGAAAAGT
*
10658509 AAAACATTTTCCAG
1 AAAACATTTTACAG
* *
10658523 AAATCATTTTACGG
1 AAAACATTTTACAG
10658537 AAAACATTTTAC
1 AAAACATTTTAC
10658549 TACCAATCAA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.42, C:0.17, G:0.07, T:0.33
Consensus pattern (14 bp):
AAAACATTTTACAG
Found at i:10668664 original size:22 final size:23
Alignment explanation
Indices: 10668639--10668684 Score: 60
Period size: 23 Copynumber: 2.0 Consensus size: 23
10668629 CAACCAAACC
10668639 AATTCA-ACATATTT-TCAAGATA
1 AATTCATACATATTTAT-AAGATA
*
10668661 AATTCATGCATATTTATAAGATA
1 AATTCATACATATTTATAAGATA
10668684 A
1 A
10668685 CGTCATCACA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
22 6 0.29
23 14 0.67
24 1 0.05
ACGTcount: A:0.46, C:0.11, G:0.07, T:0.37
Consensus pattern (23 bp):
AATTCATACATATTTATAAGATA
Found at i:10668690 original size:23 final size:23
Alignment explanation
Indices: 10668646--10668690 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
10668636 ACCAATTCAA
*
10668646 CATATTTTCAAGATAAATTCATG
1 CATATTTTCAAGATAAAGTCATG
*
10668669 CATATTTAT-AAGATAACGTCAT
1 CATATTT-TCAAGATAAAGTCAT
10668691 CACATACCCA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 18 0.95
24 1 0.05
ACGTcount: A:0.40, C:0.13, G:0.09, T:0.38
Consensus pattern (23 bp):
CATATTTTCAAGATAAAGTCATG
Found at i:10679587 original size:25 final size:26
Alignment explanation
Indices: 10679558--10679606 Score: 91
Period size: 25 Copynumber: 1.9 Consensus size: 26
10679548 TTGCAACCCT
10679558 AAATTTTCTGTAAAAAC-AAGGTTGC
1 AAATTTTCTGTAAAAACAAAGGTTGC
10679583 AAATTTTCTGTAAAAACAAAGGTT
1 AAATTTTCTGTAAAAACAAAGGTT
10679607 TAGCTTTCAG
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 17 0.74
26 6 0.26
ACGTcount: A:0.43, C:0.10, G:0.14, T:0.33
Consensus pattern (26 bp):
AAATTTTCTGTAAAAACAAAGGTTGC
Found at i:10684879 original size:42 final size:42
Alignment explanation
Indices: 10684790--10684935 Score: 156
Period size: 42 Copynumber: 3.5 Consensus size: 42
10684780 TATCCCAGAT
* * *
10684790 ATGGTCTTACATGTTATAGT-ATATCGATACCAATAGCCC-AGC
1 ATGGTCTTACATG-AATA-TCATATCGATGCCAATAGCCCAAAC
* *
10684832 TATGGTCTTACGTGAATCTCATATCGATGCCAAT-GCCCTAAAC
1 -ATGGTCTTACATGAATATCATATCGATGCCAATAGCCC-AAAC
* * *
10684875 ATGGTCTTACACGAATATCATATCGATGCCAATATCCCAGAC
1 ATGGTCTTACATGAATATCATATCGATGCCAATAGCCCAAAC
10684917 ATGGTCTTACATGAA-ATCA
1 ATGGTCTTACATGAATATCA
10684936 CATTCCGATA
Statistics
Matches: 88, Mismatches: 11, Indels: 10
0.81 0.10 0.09
Matches are distributed among these distances:
41 9 0.10
42 62 0.70
43 17 0.19
ACGTcount: A:0.32, C:0.23, G:0.16, T:0.29
Consensus pattern (42 bp):
ATGGTCTTACATGAATATCATATCGATGCCAATAGCCCAAAC
Found at i:10688631 original size:25 final size:26
Alignment explanation
Indices: 10688595--10688645 Score: 86
Period size: 25 Copynumber: 2.0 Consensus size: 26
10688585 ATTGTGGTCC
10688595 CAAAACCTAACATATTTTTGGAACAA
1 CAAAACCTAACATATTTTTGGAACAA
*
10688621 CAAAA-CTAACATATTTTTGTAACAA
1 CAAAACCTAACATATTTTTGGAACAA
10688646 TTTCATCATT
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
25 19 0.79
26 5 0.21
ACGTcount: A:0.47, C:0.18, G:0.06, T:0.29
Consensus pattern (26 bp):
CAAAACCTAACATATTTTTGGAACAA
Found at i:10690065 original size:24 final size:24
Alignment explanation
Indices: 10690033--10690085 Score: 97
Period size: 24 Copynumber: 2.2 Consensus size: 24
10690023 AAGTCTGTCA
10690033 GGAGAGGATTTAGGAGCTGGTAAG
1 GGAGAGGATTTAGGAGCTGGTAAG
*
10690057 GGAGAGGATTTAGGAGCTGGTTAG
1 GGAGAGGATTTAGGAGCTGGTAAG
10690081 GGAGA
1 GGAGA
10690086 ACAGTGTTGG
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 28 1.00
ACGTcount: A:0.28, C:0.04, G:0.47, T:0.21
Consensus pattern (24 bp):
GGAGAGGATTTAGGAGCTGGTAAG
Found at i:10691593 original size:26 final size:26
Alignment explanation
Indices: 10691486--10691596 Score: 143
Period size: 27 Copynumber: 4.2 Consensus size: 26
10691476 AGGAAGCGTC
*
10691486 CTGGTGGCTATGCCACAATTATCTGA-T
1 CTGGTGGCTCTGCCAC-ATTATCT-ATT
*
10691513 CTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTCTGCCACAT-TATCTATT
10691540 CTGGTGGCTCTGCCACGATTATCTATT
1 CTGGTGGCTCTGCCAC-ATTATCTATT
* *
10691567 CTGGTGACTCTGTCACATTATCTATT
1 CTGGTGGCTCTGCCACATTATCTATT
10691593 CTGG
1 CTGG
10691597 CAGCCATGCT
Statistics
Matches: 76, Mismatches: 5, Indels: 7
0.86 0.06 0.08
Matches are distributed among these distances:
26 16 0.21
27 58 0.76
28 2 0.03
ACGTcount: A:0.17, C:0.24, G:0.22, T:0.37
Consensus pattern (26 bp):
CTGGTGGCTCTGCCACATTATCTATT
Found at i:10700652 original size:46 final size:48
Alignment explanation
Indices: 10700544--10700661 Score: 152
Period size: 46 Copynumber: 2.5 Consensus size: 48
10700534 AAACTGACGC
* * *
10700544 CATGTCCTAGACAGGTCTTACACTAGCTTGTATATCCCAAGGACGATG
1 CATGTCCTAGACATGTCTTACACTAGCTTCTACATCCCAAGGACGATG
* * *
10700592 CATGTCCCAGACATGTCTTACACTAGC-TCT-CATCTCAATG-CTGATG
1 CATGTCCTAGACATGTCTTACACTAGCTTCTACATCCCAAGGAC-GATG
10700638 CATGTCCTAGACATGTCTTACACT
1 CATGTCCTAGACATGTCTTACACT
10700662 GGCCCACATA
Statistics
Matches: 62, Mismatches: 7, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
45 1 0.02
46 34 0.55
47 2 0.03
48 25 0.40
ACGTcount: A:0.25, C:0.28, G:0.17, T:0.30
Consensus pattern (48 bp):
CATGTCCTAGACATGTCTTACACTAGCTTCTACATCCCAAGGACGATG
Found at i:10710755 original size:25 final size:25
Alignment explanation
Indices: 10710726--10710789 Score: 85
Period size: 24 Copynumber: 2.6 Consensus size: 25
10710716 TCTTTTAATG
*
10710726 ACTAGGGCAAAGCCCTTTTTGATAA
1 ACTAGGGCAAAGCCCTTTTCGATAA
*
10710751 ACTAGGGCAAAG-CCTTTTCGGTAA
1 ACTAGGGCAAAGCCCTTTTCGATAA
* *
10710775 ACTGGGGCATAGCCC
1 ACTAGGGCAAAGCCC
10710790 CTTTAGCACT
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
24 20 0.59
25 14 0.41
ACGTcount: A:0.28, C:0.23, G:0.25, T:0.23
Consensus pattern (25 bp):
ACTAGGGCAAAGCCCTTTTCGATAA
Found at i:10711028 original size:27 final size:27
Alignment explanation
Indices: 10710998--10711113 Score: 117
Period size: 27 Copynumber: 4.3 Consensus size: 27
10710988 GGCAAAATGG
10710998 TAATTTTACCCCACAAGGGTATCTCGA
1 TAATTTTACCCCACAAGGGTATCTCGA
* *
10711025 TAATTTTACCCCATAAGGGTATCTCGG
1 TAATTTTACCCCACAAGGGTATCTCGA
* * * * * *
10711052 TAATTCTATCCTACAGGGGTATTTCGG
1 TAATTTTACCCCACAAGGGTATCTCGA
* * * *
10711079 TAATTCTACCCTACAGGGGTATTTCGA
1 TAATTTTACCCCACAAGGGTATCTCGA
10711106 T-ATTTTAC
1 TAATTTTAC
10711114 AAATCGAGAG
Statistics
Matches: 78, Mismatches: 11, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
26 6 0.08
27 72 0.92
ACGTcount: A:0.26, C:0.22, G:0.17, T:0.35
Consensus pattern (27 bp):
TAATTTTACCCCACAAGGGTATCTCGA
Found at i:10711144 original size:27 final size:28
Alignment explanation
Indices: 10711093--10711219 Score: 120
Period size: 27 Copynumber: 4.7 Consensus size: 28
10711083 TCTACCCTAC
* *
10711093 AGGGGTATTTCGAT-ATTTTACAAATCG
1 AGGGGTATTTTGGTAATTTTACAAATCG
* * *
10711120 A-GAGTATTTTGATAATTTCACAAATC-
1 AGGGGTATTTTGGTAATTTTACAAATCG
** * *
10711146 AATGGCATTTTGGTAATTTTACAAA-CT
1 AGGGGTATTTTGGTAATTTTACAAATCG
**
10711173 AGGGGTATTTTGGTAATTTTACTGATCG
1 AGGGGTATTTTGGTAATTTTACAAATCG
10711201 A-GGGTATTTTGGTAATTTT
1 AGGGGTATTTTGGTAATTTT
10711220 GTAAACTAAG
Statistics
Matches: 82, Mismatches: 14, Indels: 8
0.79 0.13 0.08
Matches are distributed among these distances:
26 12 0.15
27 68 0.83
28 2 0.02
ACGTcount: A:0.29, C:0.09, G:0.20, T:0.42
Consensus pattern (28 bp):
AGGGGTATTTTGGTAATTTTACAAATCG
Found at i:10711231 original size:27 final size:27
Alignment explanation
Indices: 10711152--10711251 Score: 94
Period size: 27 Copynumber: 3.7 Consensus size: 27
10711142 AATCAATGGC
** *
10711152 ATTTTGGTAATTTTACAAACTAGGGGT
1 ATTTTGGTAATTTTGTAAACTAAGGGT
* * * *
10711179 ATTTTGGTAATTTTACTGATC-GAGGGT
1 ATTTTGGTAATTTT-GTAAACTAAGGGT
10711206 ATTTTGGTAATTTTGTAAACTAAGGGT
1 ATTTTGGTAATTTTGTAAACTAAGGGT
* **
10711233 GTTTCAGTAATTTTGTAAA
1 ATTTTGGTAATTTTGTAAA
10711252 TCGAGGGTAA
Statistics
Matches: 58, Mismatches: 13, Indels: 4
0.77 0.17 0.05
Matches are distributed among these distances:
26 3 0.05
27 53 0.91
28 2 0.03
ACGTcount: A:0.28, C:0.06, G:0.22, T:0.44
Consensus pattern (27 bp):
ATTTTGGTAATTTTGTAAACTAAGGGT
Found at i:10711255 original size:54 final size:54
Alignment explanation
Indices: 10711152--10711260 Score: 130
Period size: 54 Copynumber: 2.0 Consensus size: 54
10711142 AATCAATGGC
* ** *
10711152 ATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTACTGATCGAGGGT
1 ATTTTGGTAATTTTACAAACTAAGGGTATTTCAGTAATTTTACTAATCGAGGGT
** * *
10711206 ATTTTGGTAATTTTGTAAACTAAGGGTGTTTCAGTAATTTT-GTAAATCGAGGGT
1 ATTTTGGTAATTTTACAAACTAAGGGTATTTCAGTAATTTTACT-AATCGAGGGT
10711260 A
1 A
10711261 AAACAGTAAT
Statistics
Matches: 46, Mismatches: 8, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
53 1 0.02
54 45 0.98
ACGTcount: A:0.28, C:0.06, G:0.24, T:0.42
Consensus pattern (54 bp):
ATTTTGGTAATTTTACAAACTAAGGGTATTTCAGTAATTTTACTAATCGAGGGT
Found at i:10711258 original size:27 final size:27
Alignment explanation
Indices: 10711201--10711287 Score: 86
Period size: 27 Copynumber: 3.2 Consensus size: 27
10711191 TTACTGATCG
**
10711201 AGGGTATTTTGGTAATTTTGTAAA-CTA
1 AGGGTATTTCAGTAATTTTGTAAATC-A
* *
10711228 AGGGTGTTTCAGTAATTTTGTAAATCG
1 AGGGTATTTCAGTAATTTTGTAAATCA
*** *
10711255 AGGGTAAAACAGTAATTCTGTAAATCA
1 AGGGTATTTCAGTAATTTTGTAAATCA
10711282 AGGGTA
1 AGGGTA
10711288 AAACGATAAT
Statistics
Matches: 49, Mismatches: 10, Indels: 2
0.80 0.16 0.03
Matches are distributed among these distances:
27 48 0.98
28 1 0.02
ACGTcount: A:0.33, C:0.07, G:0.24, T:0.36
Consensus pattern (27 bp):
AGGGTATTTCAGTAATTTTGTAAATCA
Found at i:10711406 original size:27 final size:27
Alignment explanation
Indices: 10711239--10711395 Score: 215
Period size: 27 Copynumber: 5.8 Consensus size: 27
10711229 GGGTGTTTCA
* *
10711239 GTAATTTTGTAAATCGAGGGTAAAACA
1 GTAATTCTGTAAATCGAGGGTAAAACG
*
10711266 GTAATTCTGTAAATCAAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
* *
10711293 ATAATTCTATAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
* ** *
10711320 GTAATTCTATAAATTAAGGGTAAAATG
1 GTAATTCTGTAAATCGAGGGTAAAACG
* *
10711347 GTAATTCTATAAATCGAGGGTAAAGCG
1 GTAATTCTGTAAATCGAGGGTAAAACG
10711374 GTAATTCTGTAAATCGAGGGTA
1 GTAATTCTGTAAATCGAGGGTA
10711396 CTTTGGTAAT
Statistics
Matches: 115, Mismatches: 15, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 115 1.00
ACGTcount: A:0.40, C:0.09, G:0.22, T:0.29
Consensus pattern (27 bp):
GTAATTCTGTAAATCGAGGGTAAAACG
Found at i:10711532 original size:128 final size:130
Alignment explanation
Indices: 10711373--10711617 Score: 379
Period size: 128 Copynumber: 1.9 Consensus size: 130
10711363 AGGGTAAAGC
* * *
10711373 GGTAATTCTGTAAATCGAGGGTACTTTGGTAATTTTACAAATTGAGGGCATTTCAGTAATTTGGT
1 GGTAATTCTATAAATCGAGGGTACTTTGGTAATTTTACAAATCGAGCGCATTTCAGTAATTTGGT
10711438 AAA-TGAAAGTATTCT-A-AACAGGGATAACAATACGAATGGGCCTAAAGCCTATTCTCGGTTTT
66 AAACT-AAAGTATTCTAAGAACAGGGATAACAATACGAATGGGCCTAAAGCCTATTCTCGGTTTT
10711500 G
130 G
* * * * *
10711501 GGTAATTTTATAAATTGGGGGTACTTTGGTAATTTTACAAGTCGAGCGTATTTCAGTAATTTGGT
1 GGTAATTCTATAAATCGAGGGTACTTTGGTAATTTTACAAATCGAGCGCATTTCAGTAATTTGGT
10711566 AAACTAAAGTATTCTAAAGAACAGGGATAACAATACGAATGGGCCTAAAGCC
66 AAACTAAAGTATTCT-AAGAACAGGGATAACAATACGAATGGGCCTAAAGCC
10711618 GGATAACAAT
Statistics
Matches: 105, Mismatches: 8, Indels: 5
0.89 0.07 0.04
Matches are distributed among these distances:
128 70 0.67
129 1 0.01
130 1 0.01
131 33 0.31
ACGTcount: A:0.33, C:0.12, G:0.22, T:0.32
Consensus pattern (130 bp):
GGTAATTCTATAAATCGAGGGTACTTTGGTAATTTTACAAATCGAGCGCATTTCAGTAATTTGGT
AAACTAAAGTATTCTAAGAACAGGGATAACAATACGAATGGGCCTAAAGCCTATTCTCGGTTTTG
Found at i:10711623 original size:28 final size:28
Alignment explanation
Indices: 10711590--10711645 Score: 112
Period size: 28 Copynumber: 2.0 Consensus size: 28
10711580 TAAAGAACAG
10711590 GGATAACAATACGAATGGGCCTAAAGCC
1 GGATAACAATACGAATGGGCCTAAAGCC
10711618 GGATAACAATACGAATGGGCCTAAAGCC
1 GGATAACAATACGAATGGGCCTAAAGCC
10711646 CTTCTCGGCC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.39, C:0.21, G:0.25, T:0.14
Consensus pattern (28 bp):
GGATAACAATACGAATGGGCCTAAAGCC
Found at i:10713316 original size:6 final size:6
Alignment explanation
Indices: 10713307--10713355 Score: 55
Period size: 6 Copynumber: 8.0 Consensus size: 6
10713297 AATAAGGTGA
* *
10713307 CAGAAT CAGAAT CAGAAT CAGTAT CAGGTAA- CAGAAT CAAAAT CAGAAT
1 CAGAAT CAGAAT CAGAAT CAGAAT CA-G-AAT CAGAAT CAGAAT CAGAAT
10713356 NCTGCAACCT
Statistics
Matches: 36, Mismatches: 4, Indels: 6
0.78 0.09 0.13
Matches are distributed among these distances:
5 2 0.06
6 30 0.83
7 3 0.08
8 1 0.03
ACGTcount: A:0.49, C:0.16, G:0.16, T:0.18
Consensus pattern (6 bp):
CAGAAT
Found at i:10713326 original size:31 final size:31
Alignment explanation
Indices: 10713288--10713355 Score: 100
Period size: 31 Copynumber: 2.2 Consensus size: 31
10713278 GTAAGAGCCA
* *
10713288 CAGAATCAGAATAAGGTGACAGAATCAGAAT
1 CAGAATCAGAATAAGGTAACAGAATCAAAAT
* *
10713319 CAGAATCAGTATCAGGTAACAGAATCAAAAT
1 CAGAATCAGAATAAGGTAACAGAATCAAAAT
10713350 CAGAAT
1 CAGAAT
10713356 NCTGCAACCT
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
31 33 1.00
ACGTcount: A:0.49, C:0.15, G:0.19, T:0.18
Consensus pattern (31 bp):
CAGAATCAGAATAAGGTAACAGAATCAAAAT
Found at i:10714040 original size:28 final size:28
Alignment explanation
Indices: 10713901--10714107 Score: 291
Period size: 27 Copynumber: 7.6 Consensus size: 28
10713891 GGCAAAATGG
* * * *
10713901 TAATTTTACCCCACAA-GGGTATCTCGG
1 TAATTCTACCCTACAAGGGGTATTTCGA
10713928 TAATTCTACCCTAC-AGGGGTATTTCGA
1 TAATTCTACCCTACAAGGGGTATTTCGA
* *
10713955 TATTTCTACCCTA-TAGGGGTATTTCGA
1 TAATTCTACCCTACAAGGGGTATTTCGA
*
10713982 TAATTCTACCCTAC-AGGAGTATTTCGA
1 TAATTCTACCCTACAAGGGGTATTTCGA
*
10714009 TAATTCTACCCTACAAGGGGTATTTCGG
1 TAATTCTACCCTACAAGGGGTATTTCGA
10714037 TAATTCTACCCTACAAGGGGTATTTCGA
1 TAATTCTACCCTACAAGGGGTATTTCGA
10714065 TAATTCTACCCTAC-AGGGGTATTTC-A
1 TAATTCTACCCTACAAGGGGTATTTCGA
10714091 GTAATTCTACCCTACAA
1 -TAATTCTACCCTACAA
10714108 TGTAACACCC
Statistics
Matches: 164, Mismatches: 10, Indels: 11
0.89 0.05 0.06
Matches are distributed among these distances:
26 2 0.01
27 109 0.66
28 53 0.32
ACGTcount: A:0.27, C:0.23, G:0.17, T:0.33
Consensus pattern (28 bp):
TAATTCTACCCTACAAGGGGTATTTCGA
Found at i:10714073 original size:83 final size:81
Alignment explanation
Indices: 10713901--10714107 Score: 292
Period size: 83 Copynumber: 2.5 Consensus size: 81
10713891 GGCAAAATGG
* * * * *
10713901 TAATTTTACCCCACAAGGGTATCTCGGTAATTCTACCCTAC-AGGGGTATTTCGATATTTCTACC
1 TAATTCTACCCTAC-AGGGTATTTCGATAATTCTACCCTACAAGGGGTATTTCGATAATTCTACC
*
10713965 CTATAGGGGTATTTCGA
65 CTAAAGGGGTATTTCGA
*
10713982 TAATTCTACCCTACAGGAGTATTTCGATAATTCTACCCTACAAGGGGTATTTCGGTAATTCTACC
1 TAATTCTACCCTACAGG-GTATTTCGATAATTCTACCCTACAAGGGGTATTTCGATAATTCTACC
10714047 CTACAAGGGGTATTTCGA
65 CTA-AAGGGGTATTTCGA
10714065 TAATTCTACCCTACAGGGGTATTTC-AGTAATTCTACCCTACAA
1 TAATTCTACCCTACA-GGGTATTTCGA-TAATTCTACCCTACAA
10714108 TGTAACACCC
Statistics
Matches: 114, Mismatches: 7, Indels: 8
0.88 0.05 0.06
Matches are distributed among these distances:
80 3 0.03
81 33 0.29
82 25 0.22
83 51 0.45
84 2 0.02
ACGTcount: A:0.27, C:0.23, G:0.17, T:0.33
Consensus pattern (81 bp):
TAATTCTACCCTACAGGGTATTTCGATAATTCTACCCTACAAGGGGTATTTCGATAATTCTACCC
TAAAGGGGTATTTCGA
Found at i:10714838 original size:27 final size:27
Alignment explanation
Indices: 10714808--10714888 Score: 99
Period size: 27 Copynumber: 3.0 Consensus size: 27
10714798 CCACCCAATC
*
10714808 ACAAATTAGGGGTATTTTGGTAATTTT
1 ACAAACTAGGGGTATTTTGGTAATTTT
* *
10714835 ACAAACCAGGGCTATTTTGGTAATTTT
1 ACAAACTAGGGGTATTTTGGTAATTTT
** * *
10714862 GTAAACTAAGGGTATTTTAGTAATTTT
1 ACAAACTAGGGGTATTTTGGTAATTTT
10714889 GTAAATCGAG
Statistics
Matches: 45, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 45 1.00
ACGTcount: A:0.31, C:0.07, G:0.20, T:0.42
Consensus pattern (27 bp):
ACAAACTAGGGGTATTTTGGTAATTTT
Found at i:10714889 original size:27 final size:26
Alignment explanation
Indices: 10714817--10714956 Score: 100
Period size: 27 Copynumber: 5.2 Consensus size: 26
10714807 CACAAATTAG
** *
10714817 GGGTATTTTGGTAATTTTACAAACCA
1 GGGTATTTTGGTAATTTTGTAAACAA
10714843 GGGCTATTTTGGTAATTTTGTAAACTAA
1 GGG-TATTTTGGTAATTTTGTAAAC-AA
* *
10714871 GGGTATTTTAGTAATTTTGTAAATCGA
1 GGGTATTTTGGTAATTTTGTAAA-CAA
*** * *
10714898 GGGTAAAATGATAATTCTGTAAATCAA
1 GGGTATTTTGGTAATTTTGTAAA-CAA
**** *
10714925 GGGTAAGACGGTAATTTTGTAAATCGA
1 GGGTATTTTGGTAATTTTGTAAA-CAA
10714952 GGGTA
1 GGGTA
10714957 AAATGGTAAT
Statistics
Matches: 94, Mismatches: 17, Indels: 5
0.81 0.15 0.04
Matches are distributed among these distances:
26 3 0.03
27 86 0.91
28 5 0.05
ACGTcount: A:0.33, C:0.07, G:0.24, T:0.36
Consensus pattern (26 bp):
GGGTATTTTGGTAATTTTGTAAACAA
Found at i:10714955 original size:81 final size:81
Alignment explanation
Indices: 10714853--10715011 Score: 212
Period size: 81 Copynumber: 2.0 Consensus size: 81
10714843 GGGCTATTTT
*** * * * *
10714853 GGTAATTTTGTAAACTAAGGGTATTTTAGTAATTTTGTAAATCGAGGGTAAAATGATAATTCTGT
1 GGTAATTTTGTAAACTAAGGGTAAAATAGTAATTCTATAAATCGAGGGTAAAACGATAATTCTAT
10714918 AAATCAAGGGTAAGAC
66 AAATCAAGGGTAAGAC
* *
10714934 GGTAATTTTGTAAA-TCGAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAACGATAATTCTA
1 GGTAATTTTGTAAACT-AAGGGTAAAATAGTAATTCTATAAATCGAGGGTAAAACGATAATTCTA
*
10714998 TAAATCGAGGGTAA
65 TAAATCAAGGGTAA
10715012 AGTGGTAATT
Statistics
Matches: 67, Mismatches: 10, Indels: 2
0.85 0.13 0.03
Matches are distributed among these distances:
80 1 0.01
81 66 0.99
ACGTcount: A:0.38, C:0.07, G:0.23, T:0.32
Consensus pattern (81 bp):
GGTAATTTTGTAAACTAAGGGTAAAATAGTAATTCTATAAATCGAGGGTAAAACGATAATTCTAT
AAATCAAGGGTAAGAC
Found at i:10715024 original size:27 final size:27
Alignment explanation
Indices: 10714881--10715025 Score: 182
Period size: 27 Copynumber: 5.4 Consensus size: 27
10714871 GGGTATTTTA
* *
10714881 GTAATTTTGTAAATCGAGGGTAAAATG
1 GTAATTCTATAAATCGAGGGTAAAATG
* * * * *
10714908 ATAATTCTGTAAATCAAGGGTAAGACG
1 GTAATTCTATAAATCGAGGGTAAAATG
* *
10714935 GTAATTTTGTAAATCGAGGGTAAAATG
1 GTAATTCTATAAATCGAGGGTAAAATG
*
10714962 GTAATTCTATAAATCGAGGGTAAAACG
1 GTAATTCTATAAATCGAGGGTAAAATG
* *
10714989 ATAATTCTATAAATCGAGGGTAAAGTG
1 GTAATTCTATAAATCGAGGGTAAAATG
10715016 GTAATTCTAT
1 GTAATTCTAT
10715026 CTTACAGGAG
Statistics
Matches: 101, Mismatches: 17, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 101 1.00
ACGTcount: A:0.39, C:0.08, G:0.23, T:0.31
Consensus pattern (27 bp):
GTAATTCTATAAATCGAGGGTAAAATG
Found at i:10715047 original size:81 final size:81
Alignment explanation
Indices: 10714853--10715065 Score: 202
Period size: 81 Copynumber: 2.6 Consensus size: 81
10714843 GGGCTATTTT
* * * * *
10714853 GGTAATTTTGTAAA-CTAAGGGTATTTTAGTAATTTTGTAAATCGAGGGTAAAATGATAATTCTG
1 GGTAATTTTCTAAATC-GAGGGTATTTTAGTAATTTTATAAATCGAGGGTAAAACGATAATTCTA
10714917 TAAATCAAGGGTAAGAC
65 TAAATCAAGGGTAAGAC
* *** * *
10714934 GGTAATTTTGTAAATCGAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAACGATAATTCTAT
1 GGTAATTTTCTAAATCGAGGGTATTTTAGTAATTTTATAAATCGAGGGTAAAACGATAATTCTAT
* *
10714999 AAATCGAGGGTAA-AGT
66 AAATCAAGGGTAAGA-C
* *
10715015 GGTAATTCTATCT-TA-C-AGGAGTATTTTAGTAATTTTACAAAATCGAGGGTA
1 GGTAATT-T-TCTAAATCGAGG-GTATTTTAGTAATTTTA-TAAATCGAGGGTA
10715066 TTTCAGTAAT
Statistics
Matches: 107, Mismatches: 19, Indels: 11
0.78 0.14 0.08
Matches are distributed among these distances:
80 4 0.04
81 86 0.80
82 15 0.14
83 2 0.02
ACGTcount: A:0.37, C:0.08, G:0.22, T:0.33
Consensus pattern (81 bp):
GGTAATTTTCTAAATCGAGGGTATTTTAGTAATTTTATAAATCGAGGGTAAAACGATAATTCTAT
AAATCAAGGGTAAGAC
Found at i:10715100 original size:27 final size:27
Alignment explanation
Indices: 10715035--10715146 Score: 145
Period size: 27 Copynumber: 4.1 Consensus size: 27
10715025 TCTTACAGGA
10715035 GTATTTTAGTAATTTTACAAAATCGAGG
1 GTATTTTAGTAATTTTAC-AAATCGAGG
* *
10715063 GTATTTCAGTAATTTTGCAAA-CTGAGG
1 GTATTTTAGTAATTTTACAAATC-GAGG
10715090 GTATTTTAGTAATTTTACAAATCGAGG
1 GTATTTTAGTAATTTTACAAATCGAGG
* ** *
10715117 ATATTTGGGTAATTTTATAAATCGAGG
1 GTATTTTAGTAATTTTACAAATCGAGG
10715144 GTA
1 GTA
10715147 CTTTGGCATA
Statistics
Matches: 73, Mismatches: 9, Indels: 5
0.84 0.10 0.06
Matches are distributed among these distances:
26 1 0.01
27 55 0.75
28 17 0.23
ACGTcount: A:0.33, C:0.07, G:0.21, T:0.39
Consensus pattern (27 bp):
GTATTTTAGTAATTTTACAAATCGAGG
Found at i:10717408 original size:46 final size:46
Alignment explanation
Indices: 10717336--10717423 Score: 158
Period size: 46 Copynumber: 1.9 Consensus size: 46
10717326 CGTTAGCTGC
10717336 ATCACGATCCTCTCTAAGTTTAGTGGCATAGAAAAGTACAGATCGT
1 ATCACGATCCTCTCTAAGTTTAGTGGCATAGAAAAGTACAGATCGT
* *
10717382 ATCACGATCCTCTTTAAGTTTGGTGGCATAGAAAAGTACAGA
1 ATCACGATCCTCTCTAAGTTTAGTGGCATAGAAAAGTACAGA
10717424 CTTTCTGGCA
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
46 40 1.00
ACGTcount: A:0.33, C:0.18, G:0.20, T:0.28
Consensus pattern (46 bp):
ATCACGATCCTCTCTAAGTTTAGTGGCATAGAAAAGTACAGATCGT
Found at i:10719158 original size:27 final size:27
Alignment explanation
Indices: 10719128--10719202 Score: 123
Period size: 27 Copynumber: 2.8 Consensus size: 27
10719118 ACCATATGTA
10719128 TAATTCTATAAATCGAGGGTAAAACGG
1 TAATTCTATAAATCGAGGGTAAAACGG
** *
10719155 TAATTCTATAAATTAAGGGTAAAATGG
1 TAATTCTATAAATCGAGGGTAAAACGG
10719182 TAATTCTATAAATCGAGGGTA
1 TAATTCTATAAATCGAGGGTA
10719203 GCCCGATGAA
Statistics
Matches: 43, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 43 1.00
ACGTcount: A:0.41, C:0.08, G:0.20, T:0.31
Consensus pattern (27 bp):
TAATTCTATAAATCGAGGGTAAAACGG
Found at i:10723627 original size:37 final size:37
Alignment explanation
Indices: 10723572--10723642 Score: 133
Period size: 37 Copynumber: 1.9 Consensus size: 37
10723562 TAAAAGTGTG
*
10723572 CGGGAAAGATAAGTCCGTTGACTTTCACTAATACCTT
1 CGGGAAAGATAAGCCCGTTGACTTTCACTAATACCTT
10723609 CGGGAAAGATAAGCCCGTTGACTTTCACTAATAC
1 CGGGAAAGATAAGCCCGTTGACTTTCACTAATAC
10723643 ATCCTCAAGG
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 33 1.00
ACGTcount: A:0.31, C:0.23, G:0.20, T:0.27
Consensus pattern (37 bp):
CGGGAAAGATAAGCCCGTTGACTTTCACTAATACCTT
Found at i:10729858 original size:509 final size:509
Alignment explanation
Indices: 10728901--10729918 Score: 2027
Period size: 509 Copynumber: 2.0 Consensus size: 509
10728891 CATGGAACAT
10728901 CTTCCTAACTCAATACCTTGCATAACCGAATCACAAATTGTAATATATTCAAAACATAAATCTTG
1 CTTCCTAACTCAATACCTTGCATAACCGAATCACAAATTGTAATATATTCAAAACATAAATCTTG
*
10728966 CATACCATGTTATAAACATATCAAAACATATTTATATCAAGTTTGGATATAGCTAAACAACTTTA
66 CATACCATGTTATAAACATATCAAAACATATTTATATCAAGTTTGGATATAGCCAAACAACTTTA
10729031 GATGCCAATTCACTTATAACACGTTAACTAAATACAGCAACCTAATGCACATATATACTTTTATC
131 GATGCCAATTCACTTATAACACGTTAACTAAATACAGCAACCTAATGCACATATATACTTTTATC
10729096 TATGCATATCATAGCCGAACTAGCCACACATTCAACCAGATTCATTAACCATTTCCAAAACATAT
196 TATGCATATCATAGCCGAACTAGCCACACATTCAACCAGATTCATTAACCATTTCCAAAACATAT
10729161 AACACCTATCTCAACACCATTCATCCATAGCACATCACACTATAACCACGAATAAATTCAAACAA
261 AACACCTATCTCAACACCATTCATCCATAGCACATCACACTATAACCACGAATAAATTCAAACAA
10729226 AACCAAGCATAACTGAATTCAACATATAAATTAAGCCATTTTTGCATGGCCTATATACATAATCA
326 AACCAAGCATAACTGAATTCAACATATAAATTAAGCCATTTTTGCATGGCCTATATACATAATCA
10729291 AAGGTTCATTATTTCAAAATTTAATCTAGCCTATACATGCCATAATTCAAGTTCAACTTTTTAGG
391 AAGGTTCATTATTTCAAAATTTAATCTAGCCTATACATGCCATAATTCAAGTTCAACTTTTTAGG
10729356 TACTTGAAGCAACGATCTCAAAAACGTAGAAATTATCAAAAATCGAACAAAAAC
456 TACTTGAAGCAACGATCTCAAAAACGTAGAAATTATCAAAAATCGAACAAAAAC
10729410 CTTCCTAACTCAATACCTTGCATAACCGAATCACAAATTGTAATATATTCAAAACATAAATCTTG
1 CTTCCTAACTCAATACCTTGCATAACCGAATCACAAATTGTAATATATTCAAAACATAAATCTTG
10729475 CATACCATGTTATAAACATATCAAAACATATTTATATCAAGTTTGGATATAGCCAAACAACTTTA
66 CATACCATGTTATAAACATATCAAAACATATTTATATCAAGTTTGGATATAGCCAAACAACTTTA
10729540 GATGCCAATTCACTTATAACACGTTAACTAAATACAGCAACCTAATGCACATATATACTTTTATC
131 GATGCCAATTCACTTATAACACGTTAACTAAATACAGCAACCTAATGCACATATATACTTTTATC
10729605 TATGCATATCATAGCCGAACTAGCCACACATTCAACCAGATTCATTAACCATTTCCAAAACATAT
196 TATGCATATCATAGCCGAACTAGCCACACATTCAACCAGATTCATTAACCATTTCCAAAACATAT
10729670 AACACCTATCTCAACACCATTCATCCATAGCACATCACACTATAACCACGAATAAATTCAAACAA
261 AACACCTATCTCAACACCATTCATCCATAGCACATCACACTATAACCACGAATAAATTCAAACAA
10729735 AACCAAGCATAACTGAATTCAACATATAAATTAAGCCATTTTTGCATGGCCTATATACATAATCA
326 AACCAAGCATAACTGAATTCAACATATAAATTAAGCCATTTTTGCATGGCCTATATACATAATCA
10729800 AAGGTTCATTATTTCAAAATTTAATCTAGCCTATACATGCCATAATTCAAGTTCAACTTTTTAGG
391 AAGGTTCATTATTTCAAAATTTAATCTAGCCTATACATGCCATAATTCAAGTTCAACTTTTTAGG
10729865 TACTTGAAGCAACGATCTCAAAAACGTAGAAATTATCAAAAATCGAACAAAAAC
456 TACTTGAAGCAACGATCTCAAAAACGTAGAAATTATCAAAAATCGAACAAAAAC
10729919 GAACCTTGAT
Statistics
Matches: 508, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
509 508 1.00
ACGTcount: A:0.41, C:0.22, G:0.08, T:0.29
Consensus pattern (509 bp):
CTTCCTAACTCAATACCTTGCATAACCGAATCACAAATTGTAATATATTCAAAACATAAATCTTG
CATACCATGTTATAAACATATCAAAACATATTTATATCAAGTTTGGATATAGCCAAACAACTTTA
GATGCCAATTCACTTATAACACGTTAACTAAATACAGCAACCTAATGCACATATATACTTTTATC
TATGCATATCATAGCCGAACTAGCCACACATTCAACCAGATTCATTAACCATTTCCAAAACATAT
AACACCTATCTCAACACCATTCATCCATAGCACATCACACTATAACCACGAATAAATTCAAACAA
AACCAAGCATAACTGAATTCAACATATAAATTAAGCCATTTTTGCATGGCCTATATACATAATCA
AAGGTTCATTATTTCAAAATTTAATCTAGCCTATACATGCCATAATTCAAGTTCAACTTTTTAGG
TACTTGAAGCAACGATCTCAAAAACGTAGAAATTATCAAAAATCGAACAAAAAC
Found at i:10746226 original size:42 final size:42
Alignment explanation
Indices: 10746166--10746328 Score: 193
Period size: 42 Copynumber: 3.9 Consensus size: 42
10746156 AGGGTTACTA
*
10746166 AGATTTCGTGTAAGACCATATCTGGGATATTGCATTGATATG
1 AGATTTCATGTAAGACCATATCTGGGATATTGCATTGATATG
* *
10746208 GGATTTCGTGTAAGACCATATCTGGGATA-TGACATTGATATG
1 AGATTTCATGTAAGACCATATCTGGGATATTG-CATTGATATG
* * * ** *
10746250 AGATTTCATGTAAGATCATAGCTGGGCTATTGGCATCAATACG
1 AGATTTCATGTAAGACCATATCTGGGATATT-GCATTGATATG
* * *
10746293 AGATTACATGTAAGACCATATCTCGGATATGGCATT
1 AGATTTCATGTAAGACCATATCTGGGATATTGCATT
10746329 AGTACAATAC
Statistics
Matches: 102, Mismatches: 16, Indels: 6
0.82 0.13 0.05
Matches are distributed among these distances:
41 2 0.02
42 66 0.65
43 33 0.32
44 1 0.01
ACGTcount: A:0.30, C:0.14, G:0.23, T:0.33
Consensus pattern (42 bp):
AGATTTCATGTAAGACCATATCTGGGATATTGCATTGATATG
Found at i:10753272 original size:42 final size:42
Alignment explanation
Indices: 10753210--10753371 Score: 234
Period size: 42 Copynumber: 3.8 Consensus size: 42
10753200 AGGGTTACTA
*
10753210 AGATTTCGTGTAAGATCATATCTGGGATATGGCATCGATATG
1 AGATTTCGTGTAAGACCATATCTGGGATATGGCATCGATATG
*
10753252 AGATTTCGTGTAAGACCATATCTGGGATATGACATCGATATG
1 AGATTTCGTGTAAGACCATATCTGGGATATGGCATCGATATG
* * * * *
10753294 AGATTTCGTGTAAGACCATAGCTGGGCTATTGGTATTGATACG
1 AGATTTCGTGTAAGACCATATCTGGGATA-TGGCATCGATATG
* *
10753337 AGATTACATGTAAGACCATATCTGGGATATGGCAT
1 AGATTTCGTGTAAGACCATATCTGGGATATGGCAT
10753372 TGGTACGATA
Statistics
Matches: 106, Mismatches: 13, Indels: 2
0.88 0.11 0.02
Matches are distributed among these distances:
42 72 0.68
43 34 0.32
ACGTcount: A:0.30, C:0.14, G:0.25, T:0.31
Consensus pattern (42 bp):
AGATTTCGTGTAAGACCATATCTGGGATATGGCATCGATATG
Found at i:10753358 original size:85 final size:84
Alignment explanation
Indices: 10753210--10753367 Score: 235
Period size: 85 Copynumber: 1.9 Consensus size: 84
10753200 AGGGTTACTA
* * * * *
10753210 AGATTTCGTGTAAGATCATATCTGGGATATGGCATCGATATGAGATTTCGTGTAAGACCATATCT
1 AGATTTCGTGTAAGACCATAGCTGGGATATGGCATCGATACGAGATTACATGTAAGACCATATCT
10753275 GGGATATGACATCGATATG
66 GGGATATGACATCGATATG
* * *
10753294 AGATTTCGTGTAAGACCATAGCTGGGCTATTGGTATTGATACGAGATTACATGTAAGACCATATC
1 AGATTTCGTGTAAGACCATAGCTGGGATA-TGGCATCGATACGAGATTACATGTAAGACCATATC
10753359 TGGGATATG
65 TGGGATATG
10753368 GCATTGGTAC
Statistics
Matches: 65, Mismatches: 8, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
84 26 0.40
85 39 0.60
ACGTcount: A:0.30, C:0.13, G:0.25, T:0.32
Consensus pattern (84 bp):
AGATTTCGTGTAAGACCATAGCTGGGATATGGCATCGATACGAGATTACATGTAAGACCATATCT
GGGATATGACATCGATATG
Found at i:10755047 original size:43 final size:43
Alignment explanation
Indices: 10755000--10755150 Score: 139
Period size: 43 Copynumber: 3.5 Consensus size: 43
10754990 CTTAGACATA
* *
10755000 GTCTTACATGTAATCAAATATCGATGCCACTATCCCAGACAGG
1 GTCTTACACGAAATCAAATATCGATGCCACTATCCCAGACAGG
* * * * * *
10755043 GTCTTACACGAAATGAAATA-CAATGCCAATGTCCTAGACACG
1 GTCTTACACGAAATCAAATATCGATGCCACTATCCCAGACAGG
* * *
10755085 GTCTTACATGTAAATCTCAA-ATCGATACCAAC-ATCCCAGAC-GTG
1 GTCTTACACG-AAATC-AAATATCGATGCC-ACTATCCCAGACAG-G
10755129 GTCTTACACGAAATCAAATATC
1 GTCTTACACGAAATCAAATATC
10755151 AAAAATCCTA
Statistics
Matches: 83, Mismatches: 19, Indels: 12
0.73 0.17 0.11
Matches are distributed among these distances:
42 28 0.34
43 30 0.36
44 24 0.29
45 1 0.01
ACGTcount: A:0.36, C:0.25, G:0.15, T:0.25
Consensus pattern (43 bp):
GTCTTACACGAAATCAAATATCGATGCCACTATCCCAGACAGG
Found at i:10755082 original size:42 final size:42
Alignment explanation
Indices: 10754976--10755148 Score: 123
Period size: 43 Copynumber: 4.0 Consensus size: 42
10754966 GGAAAGCTCG
* * ** * *
10754976 TACAATGCCAACGTCTTAGACATAGTCTTACATGTAATCAAA
1 TACAATGCCAATGTCCTAGACACGGTCTTACACGAAATCAAA
* * * * * *
10755018 TATCGATGCCACTATCCCAGACAGGGTCTTACACGAAATGAAA
1 TA-CAATGCCAATGTCCTAGACACGGTCTTACACGAAATCAAA
*
10755061 TACAATGCCAATGTCCTAGACACGGTCTTACATGTAAATCTCAAA
1 TACAATGCCAATGTCCTAGACACGGTCTTACACG-AAA--TCAAA
* * ** * **
10755106 T-CGATACCAACATCCCAGACGTGGTCTTACACGAAATCAAA
1 TACAATGCCAATGTCCTAGACACGGTCTTACACGAAATCAAA
10755147 TA
1 TA
10755149 TCAAAAATCC
Statistics
Matches: 100, Mismatches: 26, Indels: 10
0.74 0.19 0.07
Matches are distributed among these distances:
41 6 0.06
42 28 0.28
43 37 0.37
44 24 0.24
45 5 0.05
ACGTcount: A:0.36, C:0.25, G:0.14, T:0.24
Consensus pattern (42 bp):
TACAATGCCAATGTCCTAGACACGGTCTTACACGAAATCAAA
Found at i:10755142 original size:86 final size:85
Alignment explanation
Indices: 10754976--10755148 Score: 226
Period size: 86 Copynumber: 2.0 Consensus size: 85
10754966 GGAAAGCTCG
* * *
10754976 TACAATGCCAACGTCTTAGACATAGTCTTACATGTAATCAAATATCGATGCCACTATCCCAGACA
1 TACAATGCCAACGTCCTAGACACAGTCTTACATGTAATCAAATATCGATACCACTATCCCAGACA
*
10755041 GGGTCTTACACGAAATGAAA
66 GGGTCTTACACGAAATCAAA
* * *
10755061 TACAATGCCAATGTCCTAGACACGGTCTTACATGTAAATCTCAA-ATCGATACCAAC-ATCCCAG
1 TACAATGCCAACGTCCTAGACACAGTCTTACATGT-AATC-AAATATCGATACC-ACTATCCCAG
10755124 AC-GTGGTCTTACACGAAATCAAA
63 ACAG-GGTCTTACACGAAATCAAA
10755147 TA
1 TA
10755149 TCAAAAATCC
Statistics
Matches: 77, Mismatches: 7, Indels: 7
0.85 0.08 0.08
Matches are distributed among these distances:
85 32 0.42
86 41 0.53
87 4 0.05
ACGTcount: A:0.36, C:0.25, G:0.14, T:0.24
Consensus pattern (85 bp):
TACAATGCCAACGTCCTAGACACAGTCTTACATGTAATCAAATATCGATACCACTATCCCAGACA
GGGTCTTACACGAAATCAAA
Found at i:10759415 original size:50 final size:50
Alignment explanation
Indices: 10759321--10759416 Score: 113
Period size: 50 Copynumber: 1.9 Consensus size: 50
10759311 AAGGGAAAGA
* * * * *
10759321 TGCCGATGCCATGTCCCAGACACGGTCTTATACTGGCTCTCATATTTTGG
1 TGCCGATACCATGTCCCAAACACGGTATTATACTAGCTCACATATTTTGG
* *
10759371 TGCCGATACCATGTTCCAAACATGGTATTACT-CTAGCTCACATATT
1 TGCCGATACCATGTCCCAAACACGGTATTA-TACTAGCTCACATATT
10759417 GAGGCCGATG
Statistics
Matches: 38, Mismatches: 7, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
50 37 0.97
51 1 0.03
ACGTcount: A:0.23, C:0.27, G:0.18, T:0.32
Consensus pattern (50 bp):
TGCCGATACCATGTCCCAAACACGGTATTATACTAGCTCACATATTTTGG
Found at i:10759432 original size:48 final size:48
Alignment explanation
Indices: 10759322--10759692 Score: 312
Period size: 48 Copynumber: 7.7 Consensus size: 48
10759312 AGGGAAAGAT
* * * * * * ***
10759322 GCCGATGCCATGTCCCAGACACGGTCTTATACTGGCTCTCATATTTTGG
1 GCCGATGCCATGTTCCAAACATGGTCTTACACTAGCTCACATA-TAAAG
* * * **
10759371 TGCCGATACCATGTTCCAAACATGGTATTACTCTAGCTCACATATTGAG
1 -GCCGATGCCATGTTCCAAACATGGTCTTACACTAGCTCACATATAAAG
* * * *
10759420 GCCGATGCCATG-TCTCAGACATGGTCTTACAGTAGCTCTCATATAAAT
1 GCCGATGCCATGTTC-CAAACATGGTCTTACACTAGCTCACATATAAAG
* * * * * *
10759468 GCCAATTCCATATTCCAAACATGGTCTTACATTGGCTCACATATCAAG
1 GCCGATGCCATGTTCCAAACATGGTCTTACACTAGCTCACATATAAAG
** * * * *
10759516 GCCGATGCCATGCCCCAGACATGGTCTTACGCTAGCTCTCATATAAAT
1 GCCGATGCCATGTTCCAAACATGGTCTTACACTAGCTCACATATAAAG
* * * * *
10759564 GCCAATTCCATGTTCCAAATATGGTCTTACACTGGCTCACATATCAAG
1 GCCGATGCCATGTTCCAAACATGGTCTTACACTAGCTCACATATAAAG
** * ** *
10759612 GCCGATGCCATGCCCCAGACATGGTCTTACACTAGCTCTTATATAAAT
1 GCCGATGCCATGTTCCAAACATGGTCTTACACTAGCTCACATATAAAG
* * *
10759660 GTCAATGCCATGTTCCAAATATGGTCTTACACT
1 GCCGATGCCATGTTCCAAACATGGTCTTACACT
10759693 GGTTCAGATA
Statistics
Matches: 250, Mismatches: 69, Indels: 6
0.77 0.21 0.02
Matches are distributed among these distances:
47 2 0.01
48 209 0.84
49 5 0.02
50 34 0.14
ACGTcount: A:0.27, C:0.27, G:0.17, T:0.29
Consensus pattern (48 bp):
GCCGATGCCATGTTCCAAACATGGTCTTACACTAGCTCACATATAAAG
Found at i:10759691 original size:96 final size:96
Alignment explanation
Indices: 10759322--10759694 Score: 503
Period size: 96 Copynumber: 3.9 Consensus size: 96
10759312 AGGGAAAGAT
* * * * *** * *
10759322 GCCGATGCCATGTCCCAGACACGGTCTTATACTGGCTCTCATATTTTGGTGCCGATACCATGTTC
1 GCCGATGCCATGCCCCAGACATGGTCTTACACTAGCTCTCATA--TAAATGCCAATTCCATGTTC
* * * **
10759387 CAAACATGGTATTACTCTAGCTCACATATTGAG
64 CAAACATGGTCTTACACTGGCTCACATATCAAG
* * * *
10759420 GCCGATGCCATGTCTCAGACATGGTCTTACAGTAGCTCTCATATAAATGCCAATTCCATATTCCA
1 GCCGATGCCATGCCCCAGACATGGTCTTACACTAGCTCTCATATAAATGCCAATTCCATGTTCCA
*
10759485 AACATGGTCTTACATTGGCTCACATATCAAG
66 AACATGGTCTTACACTGGCTCACATATCAAG
*
10759516 GCCGATGCCATGCCCCAGACATGGTCTTACGCTAGCTCTCATATAAATGCCAATTCCATGTTCCA
1 GCCGATGCCATGCCCCAGACATGGTCTTACACTAGCTCTCATATAAATGCCAATTCCATGTTCCA
*
10759581 AATATGGTCTTACACTGGCTCACATATCAAG
66 AACATGGTCTTACACTGGCTCACATATCAAG
* * *
10759612 GCCGATGCCATGCCCCAGACATGGTCTTACACTAGCTCTTATATAAATGTCAATGCCATGTTCCA
1 GCCGATGCCATGCCCCAGACATGGTCTTACACTAGCTCTCATATAAATGCCAATTCCATGTTCCA
*
10759677 AATATGGTCTTACACTGG
66 AACATGGTCTTACACTGG
10759695 TTCAGATAAC
Statistics
Matches: 247, Mismatches: 28, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
96 209 0.85
98 38 0.15
ACGTcount: A:0.27, C:0.27, G:0.17, T:0.29
Consensus pattern (96 bp):
GCCGATGCCATGCCCCAGACATGGTCTTACACTAGCTCTCATATAAATGCCAATTCCATGTTCCA
AACATGGTCTTACACTGGCTCACATATCAAG
Found at i:10780295 original size:16 final size:16
Alignment explanation
Indices: 10780274--10780313 Score: 62
Period size: 16 Copynumber: 2.5 Consensus size: 16
10780264 TGACATAGGA
*
10780274 AAATTTTTAAACTTTT
1 AAATTTTTAAAATTTT
10780290 AAATTTTTAAAATTTT
1 AAATTTTTAAAATTTT
*
10780306 AAGTTTTT
1 AAATTTTT
10780314 CTGTTATTTT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
16 22 1.00
ACGTcount: A:0.38, C:0.03, G:0.03, T:0.57
Consensus pattern (16 bp):
AAATTTTTAAAATTTT
Found at i:10780313 original size:8 final size:8
Alignment explanation
Indices: 10780274--10780313 Score: 53
Period size: 8 Copynumber: 5.0 Consensus size: 8
10780264 TGACATAGGA
10780274 AAATTTTT
1 AAATTTTT
*
10780282 AAACTTTT
1 AAATTTTT
10780290 AAATTTTT
1 AAATTTTT
*
10780298 AAAATTTT
1 AAATTTTT
*
10780306 AAGTTTTT
1 AAATTTTT
10780314 CTGTTATTTT
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
8 27 1.00
ACGTcount: A:0.38, C:0.03, G:0.03, T:0.57
Consensus pattern (8 bp):
AAATTTTT
Found at i:10782256 original size:28 final size:28
Alignment explanation
Indices: 10782205--10782265 Score: 77
Period size: 28 Copynumber: 2.2 Consensus size: 28
10782195 AGGAGATTCC
* *
10782205 ATTAAGTTATTTTAGACTACTTAATTTA
1 ATTAGGTTATTTTAGACTAATTAATTTA
* **
10782233 GTTAGGTTATTTTAGTTTAATTAATTTA
1 ATTAGGTTATTTTAGACTAATTAATTTA
10782261 ATTAG
1 ATTAG
10782266 TTTAATTCAT
Statistics
Matches: 27, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.33, C:0.03, G:0.11, T:0.52
Consensus pattern (28 bp):
ATTAGGTTATTTTAGACTAATTAATTTA
Found at i:10783233 original size:21 final size:21
Alignment explanation
Indices: 10783209--10783250 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
10783199 TTGATTTGAC
* * *
10783209 TTTTTTAGAATTTATTTTTAT
1 TTTTTTAAAATTCATATTTAT
10783230 TTTTTTAAAATTCATATTTAT
1 TTTTTTAAAATTCATATTTAT
10783251 AAATTTATAA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.29, C:0.02, G:0.02, T:0.67
Consensus pattern (21 bp):
TTTTTTAAAATTCATATTTAT
Found at i:10786712 original size:26 final size:26
Alignment explanation
Indices: 10786681--10786733 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
10786671 AGAGATAAGC
10786681 GGTTAGAAAATACAGAGCGCAAGTAT
1 GGTTAGAAAATACAGAGCGCAAGTAT
* *
10786707 GGTTAGAAAATACAGAGTGCATGTAT
1 GGTTAGAAAATACAGAGCGCAAGTAT
10786733 G
1 G
10786734 CCTTTTTCAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.40, C:0.09, G:0.28, T:0.23
Consensus pattern (26 bp):
GGTTAGAAAATACAGAGCGCAAGTAT
Found at i:10791785 original size:18 final size:18
Alignment explanation
Indices: 10791759--10791796 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
10791749 GGATGATGCC
10791759 ATTAATTAAAGTTTGAGT
1 ATTAATTAAAGTTTGAGT
* *
10791777 ATTATTTAATGTTTGAGT
1 ATTAATTAAAGTTTGAGT
10791795 AT
1 AT
10791797 CTTGATGTTT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.34, C:0.00, G:0.16, T:0.50
Consensus pattern (18 bp):
ATTAATTAAAGTTTGAGT
Found at i:10793018 original size:41 final size:41
Alignment explanation
Indices: 10792943--10793020 Score: 104
Period size: 41 Copynumber: 1.9 Consensus size: 41
10792933 ATAGTGATAT
*
10792943 TCGGGCTTTAAGCCTAGCAAGCATTGTGCTGGTGAATGTAA
1 TCGGGCTTTAAGCCTAGCAAGCATTGTGCCGGTGAATGTAA
* * *
10792984 TCGGGCTTTATGCCTAGCAGGC-TTATTGCCGGTGAAT
1 TCGGGCTTTAAGCCTAGCAAGCATT-GTGCCGGTGAAT
10793021 ATAAAATCAG
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
40 2 0.06
41 30 0.94
ACGTcount: A:0.21, C:0.19, G:0.29, T:0.31
Consensus pattern (41 bp):
TCGGGCTTTAAGCCTAGCAAGCATTGTGCCGGTGAATGTAA
Found at i:10795406 original size:48 final size:48
Alignment explanation
Indices: 10795321--10795753 Score: 354
Period size: 48 Copynumber: 9.0 Consensus size: 48
10795311 TGACATTGGG
* *
10795321 TGATATGTGTGCCAGTGTAAGACCATGTTTGGAACATGGCATCAGCAA
1 TGATATGTGTGCCAGTGTAAGACCATGTCTGGGACATGGCATCAGCAA
* * **
10795369 TGTTATGAGTGCCAGTGTAAGACCATGT-TCGGGACATGGCATCAGCGT
1 TGATATGTGTGCCAGTGTAAGACCATGTCT-GGGACATGGCATCAGCAA
* * * * * **
10795417 TGATAGGTGCGCTAGTGTAAGACCATATCCGGGACATGGCATCAGCGT
1 TGATATGTGTGCCAGTGTAAGACCATGTCTGGGACATGGCATCAGCAA
* * * * **
10795465 TGATAGGTGCGCTAGTGTAAGACCATGTCTGGGACATGGCATCAACTT
1 TGATATGTGTGCCAGTGTAAGACCATGTCTGGGACATGGCATCAGCAA
* * *
10795513 TGATAGGTGTGCTAGTGTAAGACCATGTCTAGGACATGGCATCAGC-A
1 TGATATGTGTGCCAGTGTAAGACCATGTCTGGGACATGGCATCAGCAA
* * * * * * * *
10795560 TCGATATGTGCGCTAGTGTAAGACCATGTCTAGGACACGACAACGGCCA
1 T-GATATGTGTGCCAGTGTAAGACCATGTCTGGGACATGGCATCAGCAA
* * * * *
10795609 T-ATTATGAGAGCCAATGTAAGACCATGTCTGGGACATGGTATC-GACAT
1 TGA-TATGTGTGCCAGTGTAAGACCATGTCTGGGACATGGCATCAG-CAA
* * * * * * * *
10795657 TGAGACGAGAGCTAGTTTAAGACCATGTCTGGGACATGGCATCGGC-C
1 TGATATGTGTGCCAGTGTAAGACCATGTCTGGGACATGGCATCAGCAA
* * * * *
10795704 TCGACATGTGAGCCAGTGTAAAACCATGTTTGGGACATGGCATCAACAA
1 T-GATATGTGTGCCAGTGTAAGACCATGTCTGGGACATGGCATCAGCAA
10795753 T
1 T
10795754 TTACCCTCTT
Statistics
Matches: 321, Mismatches: 54, Indels: 19
0.81 0.14 0.05
Matches are distributed among these distances:
47 5 0.02
48 311 0.97
49 5 0.02
ACGTcount: A:0.27, C:0.19, G:0.28, T:0.25
Consensus pattern (48 bp):
TGATATGTGTGCCAGTGTAAGACCATGTCTGGGACATGGCATCAGCAA
Found at i:10795581 original size:144 final size:144
Alignment explanation
Indices: 10795331--10795748 Score: 444
Period size: 144 Copynumber: 2.9 Consensus size: 144
10795321 TGATATGTGT
* * * * * * *
10795331 GCCAGTGTAAGACCATGTTTGGAACATGGCATCAGCAATGTTATGAGTGCCAGTGTAAGACCATG
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATCAACATTGATACGAGTGCTAGTGTAAGACCATG
* * * * *
10795396 T-TCGGGACATGGCATCAGCGTTGATAGGTGCGCTAGTGTAAGACCATATCCGGGACATGGCATC
66 TCT-GGGACATGGCATCAGCATCGATATGTGCGCTAGTGTAAGACCATGTCTGGGACATGGCATC
** * *
10795460 AGCGTTGA-TAGGTGC
130 AGCCAT-ATTAGGAGA
* * * *
10795475 GCTAGTGTAAGACCATGTCTGGGACATGGCATCAACTTTGATAGGTGTGCTAGTGTAAGACCATG
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATCAACATTGATACGAGTGCTAGTGTAAGACCATG
* * * * * *
10795540 TCTAGGACATGGCATCAGCATCGATATGTGCGCTAGTGTAAGACCATGTCTAGGACACGACAACG
66 TCTGGGACATGGCATCAGCATCGATATGTGCGCTAGTGTAAGACCATGTCTGGGACATGGCATCA
*
10795605 GCCATATTATGAGA
131 GCCATATTAGGAGA
* * * * * *
10795619 GCCAATGTAAGACCATGTCTGGGACATGGTATCGACATTGAGACGAGAGCTAGTTTAAGACCATG
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATCAACATTGATACGAGTGCTAGTGTAAGACCATG
* * * * * * *
10795684 TCTGGGACATGGCATCGGCCTCGACATGTGAGCCAGTGTAAAACCATGTTTGGGACATGGCATCA
66 TCTGGGACATGGCATCAGCATCGATATGTGCGCTAGTGTAAGACCATGTCTGGGACATGGCATCA
10795749 ACAATTTACC
Statistics
Matches: 223, Mismatches: 49, Indels: 4
0.81 0.18 0.01
Matches are distributed among these distances:
143 1 0.00
144 221 0.99
145 1 0.00
ACGTcount: A:0.27, C:0.20, G:0.29, T:0.24
Consensus pattern (144 bp):
GCCAGTGTAAGACCATGTCTGGGACATGGCATCAACATTGATACGAGTGCTAGTGTAAGACCATG
TCTGGGACATGGCATCAGCATCGATATGTGCGCTAGTGTAAGACCATGTCTGGGACATGGCATCA
GCCATATTAGGAGA
Found at i:10804990 original size:18 final size:16
Alignment explanation
Indices: 10804953--10804992 Score: 53
Period size: 16 Copynumber: 2.4 Consensus size: 16
10804943 CCCCATGGAG
*
10804953 ACACACTAGGTCGAAT
1 ACACACTAGGTCGAAA
10804969 ACACACTAGGTCAGATAA
1 ACACACTAGGTC-GA-AA
10804987 ACACAC
1 ACACAC
10804993 GGTCTAATAA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
16 12 0.57
17 2 0.10
18 7 0.33
ACGTcount: A:0.42, C:0.28, G:0.15, T:0.15
Consensus pattern (16 bp):
ACACACTAGGTCGAAA
Found at i:10810085 original size:264 final size:264
Alignment explanation
Indices: 10809615--10810142 Score: 1029
Period size: 264 Copynumber: 2.0 Consensus size: 264
10809605 TAAGAAAAAT
10809615 AAAAAGTAGTTTTAATAAAAATTAAAAACATAAAATAATAAATAAATGTTTCTAAACATCTTCAT
1 AAAAAGTAGTTTTAATAAAAATTAAAAACATAAAATAATAAATAAATGTTTCTAAACATCTTCAT
10809680 CGCTAGATGGTTCACGAGGTGGGACTGGCAATGAGATGTAGAGGGGCTGACAAATCTGATGTAGA
66 CGCTAGATGGTTCACGAGGTGGGACTGGCAATGAGATGTAGAGGGGCTGACAAATCTGATGTAGA
10809745 GTAGCATCAATGTTGTCAAATTGTTGAAAACACTGTAGCTCGAATCGAGTGAGGTGCTCAGAGAT
131 GTAGCATCAATGTTGTCAAATTGTTGAAAACACTGTAGCTCGAATCGAGTGAGGTGCTCAGAGAT
* *
10809810 GTCAGCATATGAAGCCGCCGCATAAACTGGACGAGAGGGTGGTGGTGGCTGAGTCGGTGGGTCCT
196 GTCAGCATATGAAGCCGCCGCATAAACTGGACGAGAGGGTGGTGGTGGCTGAGTCAGTGAGTCCT
10809875 CGTG
261 CGTG
10809879 AAAAAGTAGTTTTAATAAAAATTAAAAACATAAAATAATAAATAAATGTTTCTAAACATCTTCAT
1 AAAAAGTAGTTTTAATAAAAATTAAAAACATAAAATAATAAATAAATGTTTCTAAACATCTTCAT
10809944 CGCTAGATGGTTCACGAGGTGGGACTGGCAATGAGATGTAGAGGGGCTGACAAATCTGATGTAGA
66 CGCTAGATGGTTCACGAGGTGGGACTGGCAATGAGATGTAGAGGGGCTGACAAATCTGATGTAGA
10810009 GTAGCATCAATGTTGTCAAATTGTTGAAAACACTGTAGCTCGAATCGAGTGAGGTGCTCAGAGAT
131 GTAGCATCAATGTTGTCAAATTGTTGAAAACACTGTAGCTCGAATCGAGTGAGGTGCTCAGAGAT
*
10810074 GTCAGCATATGAAGCCGCCGCATAAACTGGACGAGAGGGTGGTGGTGGCTGAGTTAGTGAGTCCT
196 GTCAGCATATGAAGCCGCCGCATAAACTGGACGAGAGGGTGGTGGTGGCTGAGTCAGTGAGTCCT
10810139 CGTG
261 CGTG
10810143 CTGTGAAGGG
Statistics
Matches: 261, Mismatches: 3, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
264 261 1.00
ACGTcount: A:0.33, C:0.14, G:0.27, T:0.26
Consensus pattern (264 bp):
AAAAAGTAGTTTTAATAAAAATTAAAAACATAAAATAATAAATAAATGTTTCTAAACATCTTCAT
CGCTAGATGGTTCACGAGGTGGGACTGGCAATGAGATGTAGAGGGGCTGACAAATCTGATGTAGA
GTAGCATCAATGTTGTCAAATTGTTGAAAACACTGTAGCTCGAATCGAGTGAGGTGCTCAGAGAT
GTCAGCATATGAAGCCGCCGCATAAACTGGACGAGAGGGTGGTGGTGGCTGAGTCAGTGAGTCCT
CGTG
Found at i:10812181 original size:39 final size:40
Alignment explanation
Indices: 10812086--10812347 Score: 337
Period size: 39 Copynumber: 6.7 Consensus size: 40
10812076 TTGAATGATG
*
10812086 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTA-AGTGAC-AAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAAT
*
10812124 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTAAT
10812165 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
10812204 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* *
10812243 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
*
10812282 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGA-ATTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-TACTAAT
* *
10812321 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
10812348 AACGAGGAGC
Statistics
Matches: 203, Mismatches: 11, Indels: 17
0.88 0.05 0.07
Matches are distributed among these distances:
39 132 0.65
40 59 0.29
41 11 0.05
42 1 0.00
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.24
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
Found at i:10824383 original size:120 final size:121
Alignment explanation
Indices: 10824221--10824443 Score: 340
Period size: 122 Copynumber: 1.8 Consensus size: 121
10824211 CACAATAACA
* * *
10824221 ATGAGAATGAGAATAGAAATGTAATGGGTATGAGGTTTTCCTAAT-CTCAATTTAACACGGAATG
1 ATGAGAATAAGAATAGAAATGTAATGGGTATGAGGTGTTCCTAATACTCAATTTAACACGAAATG
*
10824285 TATGATAACTAACCTAGGAATGCAAATTAAATGATAGGCATTGGCATGGTAATAGC
66 TATGATAACTAACCTAAGAATGCAAATTAAATGATAGGCATTGGCATGGTAATAGC
* * * **
10824341 ATGAGAATAAGCATAGTAATGTCATGGGTATGAGGTGTTCCTAATAACTTGATTTAACACGAAAT
1 ATGAGAATAAGAATAGAAATGTAATGGGTATGAGGTGTTCCTAAT-ACTCAATTTAACACGAAAT
*
10824406 GTATGATAACTAACCTAAGAATGTAAATTAAATGATAG
65 GTATGATAACTAACCTAAGAATGCAAATTAAATGATAG
10824444 AAAAATGAAA
Statistics
Matches: 91, Mismatches: 10, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
120 40 0.44
122 51 0.56
ACGTcount: A:0.39, C:0.10, G:0.21, T:0.29
Consensus pattern (121 bp):
ATGAGAATAAGAATAGAAATGTAATGGGTATGAGGTGTTCCTAATACTCAATTTAACACGAAATG
TATGATAACTAACCTAAGAATGCAAATTAAATGATAGGCATTGGCATGGTAATAGC
Found at i:10824560 original size:56 final size:55
Alignment explanation
Indices: 10824493--10824606 Score: 210
Period size: 56 Copynumber: 2.1 Consensus size: 55
10824483 GATAATAGGC
10824493 ATTAGAGATAAGTAAAATAGAAGTGAAAGGAGTAAACAAACGCTAAGGGAAAGAG
1 ATTAGAGATAAGTAAAATAGAAGTGAAAGGAGTAAACAAACGCTAAGGGAAAGAG
*
10824548 ATNTAGAGATAAGTAAAATAGAAGTGAAAGGAGTAAACAAATGCTAAGGGAAAGAG
1 AT-TAGAGATAAGTAAAATAGAAGTGAAAGGAGTAAACAAACGCTAAGGGAAAGAG
10824604 ATT
1 ATT
10824607 GAGCGTAAAA
Statistics
Matches: 57, Mismatches: 1, Indels: 2
0.95 0.02 0.03
Matches are distributed among these distances:
55 3 0.05
56 54 0.95
ACGTcount: A:0.52, C:0.04, G:0.26, T:0.17
Consensus pattern (55 bp):
ATTAGAGATAAGTAAAATAGAAGTGAAAGGAGTAAACAAACGCTAAGGGAAAGAG
Found at i:10831636 original size:43 final size:44
Alignment explanation
Indices: 10831576--10831710 Score: 128
Period size: 51 Copynumber: 2.9 Consensus size: 44
10831566 GATCTATGTG
* *
10831576 GCATCTGAGCTCATTGAGAGGTTCGAGTTCATTATGGATGCA-A
1 GCATCCGAGCTCGTTGAGAGGTTCGAGTTCATTATGGATGCATA
* * *
10831619 GCATCCGAGCTCGTTGAGTGGTTAGAGTTCATAATGGATGTGATTCATGTA
1 GCATCCGAGCTCGTTGAGAGGTTCGAGTTCAT--T--ATG-GATGCA--TA
* *
10831670 ACATCCGAGCTCGTTGAGAGGTCCGAGTTCATTATTGGATG
1 GCATCCGAGCTCGTTGAGAGGTTCGAGTTCATTA-TGGATG
10831711 AATACATGTT
Statistics
Matches: 73, Mismatches: 10, Indels: 14
0.75 0.10 0.14
Matches are distributed among these distances:
43 28 0.38
45 1 0.01
47 7 0.10
48 7 0.10
49 1 0.01
51 29 0.40
ACGTcount: A:0.24, C:0.16, G:0.29, T:0.31
Consensus pattern (44 bp):
GCATCCGAGCTCGTTGAGAGGTTCGAGTTCATTATGGATGCATA
Found at i:10831719 original size:51 final size:51
Alignment explanation
Indices: 10831620--10831719 Score: 130
Period size: 51 Copynumber: 2.0 Consensus size: 51
10831610 TGGATGCAAG
* * * *
10831620 CATCCGAGCTCGTTGAGTGGTTAGAGTTCATAATGGATGTGATTCATGTAA
1 CATCCGAGCTCGTTGAGAGGTCAGAGTTCATAATGGATGTAATACATGTAA
* *
10831671 CATCCGAGCTCGTTGAGAGGTCCGAGTTCATTATTGGATG-AATACATGT
1 CATCCGAGCTCGTTGAGAGGTCAGAGTTCA-TAATGGATGTAATACATGT
10831720 TTTGAGGTAG
Statistics
Matches: 42, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
51 34 0.81
52 8 0.19
ACGTcount: A:0.25, C:0.16, G:0.27, T:0.32
Consensus pattern (51 bp):
CATCCGAGCTCGTTGAGAGGTCAGAGTTCATAATGGATGTAATACATGTAA
Found at i:10838686 original size:42 final size:44
Alignment explanation
Indices: 10838579--10838686 Score: 141
Period size: 43 Copynumber: 2.5 Consensus size: 44
10838569 TAGAAATCTG
* *
10838579 AGCTCGTTGAGCGGTCCGAGTTCGTGATATATGTGAGAATCCGA
1 AGCTTGTTGAGAGGTCCGAGTTCGTGATATATGTGAGAATCCGA
* * * *
10838623 A-CTTGTTGAGTGGTCCAAGTTCGTGATCTATGTG-GCATCC-A
1 AGCTTGTTGAGAGGTCCGAGTTCGTGATATATGTGAGAATCCGA
10838664 AGCTTGTTGAGAGGTCCGAGTTC
1 AGCTTGTTGAGAGGTCCGAGTTC
10838687 ATTATGGATG
Statistics
Matches: 56, Mismatches: 7, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
41 2 0.04
42 24 0.43
43 29 0.52
44 1 0.02
ACGTcount: A:0.20, C:0.19, G:0.31, T:0.31
Consensus pattern (44 bp):
AGCTTGTTGAGAGGTCCGAGTTCGTGATATATGTGAGAATCCGA
Found at i:10841436 original size:34 final size:34
Alignment explanation
Indices: 10841341--10841424 Score: 105
Period size: 34 Copynumber: 2.5 Consensus size: 34
10841331 CAGTATTAGT
* * ** *
10841341 TAGGCCTTAGCCTATTTCTTTAATAGTAACAGTC
1 TAGGCCTAAGCCCATTTCAGTAACAGTAACAGTC
* *
10841375 TGGGCCTAAGCCCATTTCAGTAACAGTAATAGTC
1 TAGGCCTAAGCCCATTTCAGTAACAGTAACAGTC
10841409 TAGGCCTAAGCCCATT
1 TAGGCCTAAGCCCATT
10841425 AATATATCAG
Statistics
Matches: 42, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
34 42 1.00
ACGTcount: A:0.27, C:0.24, G:0.18, T:0.31
Consensus pattern (34 bp):
TAGGCCTAAGCCCATTTCAGTAACAGTAACAGTC
Found at i:10847141 original size:48 final size:47
Alignment explanation
Indices: 10847059--10847385 Score: 231
Period size: 48 Copynumber: 6.8 Consensus size: 47
10847049 GGTGCTATGT
* *
10847059 GTGCCAGTGTAAGACCATGT-TCGGAACATGGCATCGACAATGTTATAA
1 GTGCCAGTGTAAGACCATGTCT-GGGACATGGCATCGAC-ATGTTATAG
* * * * *
10847107 GAGCCAATGTAAGACCATGTCTGGGACATTGCATCGGCAT-TGATAG
1 GTGCCAGTGTAAGACCATGTCTGGGACATGGCATCGACATGTTATAG
* *
10847153 GTGCGCTAGTGTAAGACCATGTCCGGGACATGGCATCGGC--GTTGATAG
1 GTGC-C-AGTGTAAGACCATGTCTGGGACATGGCATCGACATGTT-ATAG
* * *
10847201 GTGCGCTAGTGTAAGACCATGTATGGGACATGGCATCGAC--GTCGATAT
1 GTGC-C-AGTGTAAGACCATGTCTGGGACATGGCATCGACATGT-TATAG
* ** * *
10847249 GTGCGCTAGTGTAAGACCATGTCTGGGACATGGCATC-AGCCT-CAACAT
1 GTGC-C-AGTGTAAGACCATGTCTGGGACATGGCATCGA-CATGTTATAG
* * * **
10847297 GTGATCCAGTGTAAGACCATGTCTGGGACATGGCATTGGCCTCGACAT-G
1 GTG--CCAGTGTAAGACCATGTCTGGGACATGGCATCGACAT-GTTATAG
* * *
10847346 TGAGCCAGCGTAAGACCATGTCTGGGACATGGCGTCGACA
1 -GTGCCAGTGTAAGACCATGTCTGGGACATGGCATCGACA
10847386 ATTTACCCTC
Statistics
Matches: 231, Mismatches: 33, Indels: 30
0.79 0.11 0.10
Matches are distributed among these distances:
46 7 0.03
47 5 0.02
48 213 0.92
49 2 0.01
50 4 0.02
ACGTcount: A:0.25, C:0.21, G:0.30, T:0.23
Consensus pattern (47 bp):
GTGCCAGTGTAAGACCATGTCTGGGACATGGCATCGACATGTTATAG
Found at i:10847214 original size:96 final size:96
Alignment explanation
Indices: 10847107--10847378 Score: 337
Period size: 96 Copynumber: 2.8 Consensus size: 96
10847097 AATGTTATAA
* * * *
10847107 GAGCCAATGTAAGACCATGTCTGGGACATTGCATCGGCATTGATAGGTGCGCTAGTGTAAGACCA
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATCGATATGTGCGCTAGTGTAAGACCA
* * * ** *
10847172 TGTCCGGGACATGGCATCGGCGTTGATAGGT
66 TGTCTGGGACATGGCATCAGCCTCAACAGGT
* * * * *
10847203 GCGCTAGTGTAAGACCATGTATGGGACATGGCATCGACGTCGATATGTGCGCTAGTGTAAGACCA
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATCGATATGTGCGCTAGTGTAAGACCA
*
10847268 TGTCTGGGACATGGCATCAGCCTCAACATGT
66 TGTCTGGGACATGGCATCAGCCTCAACAGGT
* * * * * * *
10847299 GATCCAGTGTAAGACCATGTCTGGGACATGGCATTGGCCTCGACATGTGAGCCAGCGTAAGACCA
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATCGATATGTGCGCTAGTGTAAGACCA
10847364 TGTCTGGGACATGGC
66 TGTCTGGGACATGGC
10847379 GTCGACAATT
Statistics
Matches: 149, Mismatches: 27, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
96 149 1.00
ACGTcount: A:0.24, C:0.22, G:0.31, T:0.23
Consensus pattern (96 bp):
GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATCGATATGTGCGCTAGTGTAAGACCA
TGTCTGGGACATGGCATCAGCCTCAACAGGT
Found at i:10847325 original size:144 final size:144
Alignment explanation
Indices: 10847114--10847384 Score: 353
Period size: 144 Copynumber: 1.9 Consensus size: 144
10847104 TAAGAGCCAA
* * ** * * *
10847114 TGTAAGACCATGTCTGGGACATTGCATCGGCATTGATAGGTGCGCTAGTGTAAGACCATGTCCGG
1 TGTAAGACCATGTCTGGGACATGGCATCAGCATCAACAGGTGAGCCAGTGTAAGACCATGTCCGG
* * * * * *
10847179 GACATGGCATCGGCGTTGATAGGTGCGCTAGTGTAAGACCATGTATGGGACATGGCATCGACGTC
66 GACATGGCATCGGCCTCGACAGGTGAGCCAGCGTAAGACCATGTATGGGACATGGCATCGACGTC
10847244 GATATGTGCGCTAG
131 GATATGTGCGCTAG
* * * *
10847258 TGTAAGACCATGTCTGGGACATGGCATCAGCCTCAACATGTGATCCAGTGTAAGACCATGTCTGG
1 TGTAAGACCATGTCTGGGACATGGCATCAGCATCAACAGGTGAGCCAGTGTAAGACCATGTCCGG
* * * *
10847323 GACATGGCATTGGCCTCGACATGTGAGCCAGCGTAAGACCATGTCTGGGACATGGCGTCGAC
66 GACATGGCATCGGCCTCGACAGGTGAGCCAGCGTAAGACCATGTATGGGACATGGCATCGAC
10847385 AATTTACCCT
Statistics
Matches: 106, Mismatches: 21, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
144 106 1.00
ACGTcount: A:0.24, C:0.22, G:0.31, T:0.24
Consensus pattern (144 bp):
TGTAAGACCATGTCTGGGACATGGCATCAGCATCAACAGGTGAGCCAGTGTAAGACCATGTCCGG
GACATGGCATCGGCCTCGACAGGTGAGCCAGCGTAAGACCATGTATGGGACATGGCATCGACGTC
GATATGTGCGCTAG
Found at i:10850787 original size:44 final size:44
Alignment explanation
Indices: 10850721--10850805 Score: 129
Period size: 44 Copynumber: 1.9 Consensus size: 44
10850711 TATATATGAG
10850721 GCATCCGAACTCATTGCATTGGTCCGAGTTCACT-ATGGATGTGA
1 GCATCCGAACTCATTGCATTGGTCCGAGTTCA-TAATGGATGTGA
*
10850765 GCATCCGAACTCGTTG-AGTTGGTCCGAGTTCATAATGGATG
1 GCATCCGAACTCATTGCA-TTGGTCCGAGTTCATAATGGATG
10850806 CAATGCATGT
Statistics
Matches: 38, Mismatches: 1, Indels: 4
0.88 0.02 0.09
Matches are distributed among these distances:
43 2 0.05
44 36 0.95
ACGTcount: A:0.22, C:0.21, G:0.27, T:0.29
Consensus pattern (44 bp):
GCATCCGAACTCATTGCATTGGTCCGAGTTCATAATGGATGTGA
Found at i:10855502 original size:34 final size:33
Alignment explanation
Indices: 10855459--10855525 Score: 125
Period size: 34 Copynumber: 2.0 Consensus size: 33
10855449 AAGAATTTGT
10855459 GATTCACAGTGATGTGTCCTTGAGTGGACTAGG
1 GATTCACAGTGATGTGTCCTTGAGTGGACTAGG
10855492 NGATTCACAGTGATGTGTCCTTGAGTGGACTAGG
1 -GATTCACAGTGATGTGTCCTTGAGTGGACTAGG
10855526 TTGCGTGCTT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 33 1.00
ACGTcount: A:0.21, C:0.15, G:0.33, T:0.30
Consensus pattern (33 bp):
GATTCACAGTGATGTGTCCTTGAGTGGACTAGG
Found at i:10858759 original size:44 final size:45
Alignment explanation
Indices: 10858699--10858791 Score: 136
Period size: 44 Copynumber: 2.1 Consensus size: 45
10858689 TATATATGAG
*
10858699 GCATCTGAACTCGTTGAGTTGGTCTGAGTTCACT-ATGGATACGA-
1 GCATCTGAACTCGTTGAGTTGGTCTGACTTCA-TAATGGATACGAT
* *
10858743 GCATCTGAACTTGTTGAGTTGGTCTGACTTCATAATGGATGCGAT
1 GCATCTGAACTCGTTGAGTTGGTCTGACTTCATAATGGATACGAT
10858788 GCAT
1 GCAT
10858792 GTAATTGAGT
Statistics
Matches: 44, Mismatches: 3, Indels: 3
0.88 0.06 0.06
Matches are distributed among these distances:
43 1 0.02
44 39 0.89
45 4 0.09
ACGTcount: A:0.23, C:0.17, G:0.27, T:0.33
Consensus pattern (45 bp):
GCATCTGAACTCGTTGAGTTGGTCTGACTTCATAATGGATACGAT
Found at i:10863599 original size:25 final size:25
Alignment explanation
Indices: 10863571--10863619 Score: 73
Period size: 25 Copynumber: 2.0 Consensus size: 25
10863561 AAGAAATCAT
*
10863571 ATTATATAATAAGGTTAA-ATATGTA
1 ATTAAATAATAA-GTTAATATATGTA
10863596 ATTAAATAATAAGTTAATATATGT
1 ATTAAATAATAAGTTAATATATGT
10863620 TATAATAAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 5 0.23
25 17 0.77
ACGTcount: A:0.49, C:0.00, G:0.10, T:0.41
Consensus pattern (25 bp):
ATTAAATAATAAGTTAATATATGTA
Found at i:10864623 original size:35 final size:35
Alignment explanation
Indices: 10864577--10864648 Score: 108
Period size: 35 Copynumber: 2.1 Consensus size: 35
10864567 TGATTACATG
* * *
10864577 TAAGACCACGTCTTAGACGTTGGCATTGTATGATA
1 TAAGACAACGTCTGAGACGCTGGCATTGTATGATA
*
10864612 TAAGACAACGTCTGGGACGCTGGCATTGTATGATA
1 TAAGACAACGTCTGAGACGCTGGCATTGTATGATA
10864647 TA
1 TA
10864649 TGTTTCGAAT
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
35 33 1.00
ACGTcount: A:0.29, C:0.17, G:0.25, T:0.29
Consensus pattern (35 bp):
TAAGACAACGTCTGAGACGCTGGCATTGTATGATA
Found at i:10866504 original size:29 final size:29
Alignment explanation
Indices: 10866384--10866503 Score: 154
Period size: 29 Copynumber: 4.2 Consensus size: 29
10866374 TACATACATG
*
10866384 CATATGGCCCACTAGGCCC-AATCTCATT
1 CATATGGCCCATTAGGCCCAAATCTCATT
10866412 CATATGGCCCATTAGGCCCAAATCTCATT
1 CATATGGCCCATTAGGCCCAAATCTCATT
* * * *
10866441 CCTATGGCTCATTAGGCCGAAATCACATT
1 CATATGGCCCATTAGGCCCAAATCTCATT
* *
10866470 CATATAGCCCATTAGGCCCTAATCAT-ATT
1 CATATGGCCCATTAGGCCCAAATC-TCATT
10866499 CATAT
1 CATAT
10866504 ACATGCTTTC
Statistics
Matches: 79, Mismatches: 11, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
28 18 0.23
29 61 0.77
ACGTcount: A:0.28, C:0.30, G:0.13, T:0.28
Consensus pattern (29 bp):
CATATGGCCCATTAGGCCCAAATCTCATT
Found at i:10869467 original size:26 final size:26
Alignment explanation
Indices: 10869438--10869588 Score: 108
Period size: 27 Copynumber: 5.7 Consensus size: 26
10869428 TTAGTTTATC
**
10869438 AAATTACTGAAATACCCCCAGTTGTA
1 AAATTACCCAAATACCCCCAGTTGTA
*
10869464 AAATTA-CCAAAGTACCCCCAGTTTATA
1 AAATTACCCAAA-TACCCCCAG-TTGTA
* * *
10869491 AAATTACCCAAATATCCTCAATTTGTA
1 AAATTACCCAAATA-CCCCCAGTTGTA
* * * *
10869518 AAATTACCGAAATGCCCTCAGTTTGCA
1 AAATTACCCAAATACCCCCAG-TTGTA
** * *
10869545 AAATTACTAAAATACCCTCAACTTGTA
1 AAATTACCCAAATACCC-CCAGTTGTA
10869572 AAATTA-CCAAAGTACCC
1 AAATTACCCAAA-TACCC
10869589 TCAATTTACA
Statistics
Matches: 95, Mismatches: 23, Indels: 13
0.73 0.18 0.10
Matches are distributed among these distances:
25 3 0.03
26 21 0.22
27 61 0.64
28 10 0.11
ACGTcount: A:0.40, C:0.25, G:0.08, T:0.27
Consensus pattern (26 bp):
AAATTACCCAAATACCCCCAGTTGTA
Found at i:10869574 original size:81 final size:80
Alignment explanation
Indices: 10869438--10869605 Score: 194
Period size: 81 Copynumber: 2.1 Consensus size: 80
10869428 TTAGTTTATC
* * * **
10869438 AAATTACTGAAATACCCCCAGTTGTAAAATTACCAAAGTACCCCCAGTTTATAAAATTACCCAAA
1 AAATTACCGAAATACCCCCAGTTGCAAAATTACCAAAATACCCCCAACTTATAAAATTA-CCAAA
* **
10869503 -TATCCTCAATTTGTA
65 GTACCCTCAATTTACA
* * * * *
10869518 AAATTACCGAAATGCCCTCAGTTTGCAAAATTACTAAAATACCCTCAACTTGTAAAATTACCAAA
1 AAATTACCGAAATACCCCCAG-TTGCAAAATTACCAAAATACCCCCAACTTATAAAATTACCAAA
10869583 GTACCCTCAATTTACA
65 GTACCCTCAATTTACA
10869599 AAATTAC
1 AAATTAC
10869606 TGTTTTACCT
Statistics
Matches: 73, Mismatches: 13, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
80 23 0.32
81 50 0.68
ACGTcount: A:0.41, C:0.24, G:0.07, T:0.28
Consensus pattern (80 bp):
AAATTACCGAAATACCCCCAGTTGCAAAATTACCAAAATACCCCCAACTTATAAAATTACCAAAG
TACCCTCAATTTACA
Found at i:10869589 original size:27 final size:26
Alignment explanation
Indices: 10869459--10869605 Score: 150
Period size: 27 Copynumber: 5.5 Consensus size: 26
10869449 ATACCCCCAG
* *
10869459 TTGTAAAATTACCAAAGTACCCCCAGT
1 TTGTAAAATTACCAAA-TACCCTCAAT
* *
10869486 TTATAAAATTACCCAAATATCCTCAAT
1 TTGTAAAATTA-CCAAATACCCTCAAT
* *
10869513 TTGTAAAATTACCGAAATGCCCTCAGT
1 TTGTAAAATTACC-AAATACCCTCAAT
* * *
10869540 TTGCAAAATTACTAAAATACCCTCAAC
1 TTGTAAAATTAC-CAAATACCCTCAAT
10869567 TTGTAAAATTACCAAAGTACCCTCAAT
1 TTGTAAAATTACCAAA-TACCCTCAAT
**
10869594 TTACAAAATTAC
1 TTGTAAAATTAC
10869606 TGTTTTACCT
Statistics
Matches: 98, Mismatches: 18, Indels: 8
0.79 0.15 0.06
Matches are distributed among these distances:
26 5 0.05
27 88 0.90
28 5 0.05
ACGTcount: A:0.41, C:0.23, G:0.07, T:0.29
Consensus pattern (26 bp):
TTGTAAAATTACCAAATACCCTCAAT
Found at i:10869606 original size:54 final size:54
Alignment explanation
Indices: 10869430--10869606 Score: 207
Period size: 54 Copynumber: 3.3 Consensus size: 54
10869420 AGACTACTTT
* * * *
10869430 AGTTTATC-AAATTACTGAAATACCC-CCAGTTGTAAAATTACCAAAGTACCCCC
1 AGTTTA-CAAAATTACTAAAATACCCTCAACTTGTAAAATTACCAAAGTACCCTC
* ** * * *
10869483 AGTTTATAAAATTACCCAAATATCCTCAATTTGTAAAATTACCGAAA-TGCCCTC
1 AGTTTACAAAATTACTAAAATACCCTCAACTTGTAAAATTACC-AAAGTACCCTC
*
10869537 AGTTTGCAAAATTACTAAAATACCCTCAACTTGTAAAATTACCAAAGTACCCTC
1 AGTTTACAAAATTACTAAAATACCCTCAACTTGTAAAATTACCAAAGTACCCTC
*
10869591 AATTTACAAAATTACT
1 AGTTTACAAAATTACT
10869607 GTTTTACCTT
Statistics
Matches: 103, Mismatches: 17, Indels: 7
0.81 0.13 0.06
Matches are distributed among these distances:
53 23 0.22
54 77 0.75
55 3 0.03
ACGTcount: A:0.40, C:0.23, G:0.07, T:0.29
Consensus pattern (54 bp):
AGTTTACAAAATTACTAAAATACCCTCAACTTGTAAAATTACCAAAGTACCCTC
Found at i:10869614 original size:27 final size:27
Alignment explanation
Indices: 10869584--10869777 Score: 235
Period size: 27 Copynumber: 7.2 Consensus size: 27
10869574 ATTACCAAAG
*
10869584 TACCCTCAATTTACAAAATTACTGTTT
1 TACCCTCGATTTACAAAATTACTGTTT
* * *
10869611 TACCTTCGATTTATAAAATTACCGTTT
1 TACCCTCGATTTACAAAATTACTGTTT
* * * *
10869638 TACCTTCGATTGACAAAATTATTATTT
1 TACCCTCGATTTACAAAATTACTGTTT
*
10869665 TACCCTCGATTTACAAAATTACTATTT
1 TACCCTCGATTTACAAAATTACTGTTT
* *
10869692 TACCCTCGATTTACAACATTATTGTTT
1 TACCCTCGATTTACAAAATTACTGTTT
* * *
10869719 TACCCTCGATTTATAGAATTACCGTTT
1 TACCCTCGATTTACAAAATTACTGTTT
* **
10869746 TACCCTCGATTTATAAAATTACCATTT
1 TACCCTCGATTTACAAAATTACTGTTT
10869773 TACCC
1 TACCC
10869778 CTAGGGTGTT
Statistics
Matches: 145, Mismatches: 22, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 145 1.00
ACGTcount: A:0.30, C:0.22, G:0.06, T:0.42
Consensus pattern (27 bp):
TACCCTCGATTTACAAAATTACTGTTT
Done.