Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr3
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 100348136
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 3062571 characters in sequence are not A, C, G, or T
File 46 of 290
Found at i:15393127 original size:93 final size:93
Alignment explanation
Indices: 15392968--15393140 Score: 292
Period size: 93 Copynumber: 1.9 Consensus size: 93
15392958 GGGATATTTG
* * * *
15392968 GGCATCTGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
15393033 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
* *
15393061 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
15393126 TTGAGTCCGAGTTCG
66 TTGAGTCCGAGTTCG
15393141 CTTATGGGCG
Statistics
Matches: 74, Mismatches: 6, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.20, C:0.21, G:0.31, T:0.28
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:15398885 original size:158 final size:155
Alignment explanation
Indices: 15398426--15398883 Score: 562
Period size: 158 Copynumber: 2.9 Consensus size: 155
15398416 AACAAAAGAT
* * * *
15398426 CATGCATTCAACCTAACACAACGGGAACATAGGTATATCGTAAACAC-TTTTTAATTTTCAATTC
1 CATGCATTCAACCTAACACAACTGGATCACAGGTATATCGTAAACACTTTTTTAA-TGTCAATTC
* * *
15398490 CAAAATATTAAAATCTAATTTGGGTTTTGATTTTTTTTGTCTTAGTCTGGTACGAGTACGAGAAC
65 AAAAATATTTAAATCTAATTTGGGTTTT-A-TTTTTTTGTCTTAGTATGGTACGAGTA-GAGAAC
* * *
15398555 TAGAAGCCCAAAAAATAACAACATAACAC
127 TAGAAGCCAAAAAAAGAACAACAGAACAC
* * ** *
15398584 CATGCATTCAACCTAATACAACTGGATCACAGGTATATCGTATACACTACTTTAATGTCAATTAA
1 CATGCATTCAACCTAACACAACTGGATCACAGGTATATCGTAAACACTTTTTTAATGTCAATTCA
* * *
15398649 AAAATATTTTAATCTAATTTAGGGTTCTAATTTTTTTGGTCTTAG-ATGGTACGAGTACATGAAC
66 AAAATATTTAAATCTAATTT-GGGTT-TTATTTTTTT-GTCTTAGTATGGTACGAGTAGA-GAAC
15398713 TAGAAGCCAAAAAAAGAACAACAGAACAC
127 TAGAAGCCAAAAAAAGAACAACAGAACAC
* * * *
15398742 CATGCATTCAGCCTAACACAACTAGATCACAGATATATCGTAAACACTTTTTTAATGTCAATTCT
1 CATGCATTCAACCTAACACAACTGGATCACAGGTATATCGTAAACACTTTTTTAATGTCAATTCA
* * * *
15398807 AAATTATTTAAATCTAATTTGGGGTTTTATTTTTAT-TCTCAGTTTGGTACGAGTATGAGAACTA
66 AAAATATTTAAATCTAATTT-GGGTTTTATTTTTTTGTCTTAGTATGGTACGAGTA-GAGAACTA
*
15398871 GAAACCAAAAAAA
129 GAAGCCAAAAAAA
15398884 AATGGCATAT
Statistics
Matches: 257, Mismatches: 36, Indels: 16
0.83 0.12 0.05
Matches are distributed among these distances:
155 5 0.02
156 29 0.11
157 10 0.04
158 194 0.75
159 18 0.07
160 1 0.00
ACGTcount: A:0.38, C:0.17, G:0.13, T:0.32
Consensus pattern (155 bp):
CATGCATTCAACCTAACACAACTGGATCACAGGTATATCGTAAACACTTTTTTAATGTCAATTCA
AAAATATTTAAATCTAATTTGGGTTTTATTTTTTTGTCTTAGTATGGTACGAGTAGAGAACTAGA
AGCCAAAAAAAGAACAACAGAACAC
Found at i:15399075 original size:84 final size:82
Alignment explanation
Indices: 15398958--15399162 Score: 356
Period size: 84 Copynumber: 2.5 Consensus size: 82
15398948 TTGAGATGGT
* *
15398958 TAACATATTTTGTTTGTTTTTTGAAATGATTTGTTGAAATGGTTGGTTAACATTTTACTGCTATA
1 TAACATATTTTGTTTGTTTTTTCAAATGATTTGTTGAAATGGTTGGTTAACATATTACTGCTATA
*
15399023 GGATCATTTTGTTAGTA
66 GGATCATTTTATTAGTA
*
15399040 TAACATATTTTGTTTGTTTTTTTTTAAATGATTTGTTGAAATGGTTGGTTAACATATTACTGCTA
1 TAACATATTTTGTTTG--TTTTTTCAAATGATTTGTTGAAATGGTTGGTTAACATATTACTGCTA
15399105 TAGGATCATTTTATTAGTA
64 TAGGATCATTTTATTAGTA
15399124 TAACATATTTTGTTTGTTTTTTCAAATGATTTGTTGAAA
1 TAACATATTTTGTTTGTTTTTTCAAATGATTTGTTGAAA
15399163 GATGTATACC
Statistics
Matches: 117, Mismatches: 4, Indels: 4
0.94 0.03 0.03
Matches are distributed among these distances:
82 38 0.32
84 79 0.68
ACGTcount: A:0.27, C:0.06, G:0.16, T:0.51
Consensus pattern (82 bp):
TAACATATTTTGTTTGTTTTTTCAAATGATTTGTTGAAATGGTTGGTTAACATATTACTGCTATA
GGATCATTTTATTAGTA
Found at i:15410743 original size:16 final size:16
Alignment explanation
Indices: 15410724--15410766 Score: 59
Period size: 18 Copynumber: 2.6 Consensus size: 16
15410714 TATATAAAAA
15410724 TTAAAATATAAATTTT
1 TTAAAATATAAATTTT
15410740 TTAATATATATAAATTTT
1 TTAA-A-ATATAAATTTT
*
15410758 TTAATATAT
1 TTAAAATAT
15410767 GTAAAAACAA
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
16 8 0.33
17 1 0.04
18 15 0.62
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (16 bp):
TTAAAATATAAATTTT
Found at i:15410750 original size:18 final size:18
Alignment explanation
Indices: 15410729--15410771 Score: 77
Period size: 18 Copynumber: 2.4 Consensus size: 18
15410719 AAAAATTAAA
15410729 ATATAAATTTTTTAATAT
1 ATATAAATTTTTTAATAT
15410747 ATATAAATTTTTTAATAT
1 ATATAAATTTTTTAATAT
*
15410765 ATGTAAA
1 ATATAAA
15410772 AACAACTTTT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.47, C:0.00, G:0.02, T:0.51
Consensus pattern (18 bp):
ATATAAATTTTTTAATAT
Found at i:15411318 original size:20 final size:20
Alignment explanation
Indices: 15411289--15411326 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
15411279 CTTCCTCTAT
*
15411289 TTGTTGTTTGCTACAATTTG
1 TTGTTATTTGCTACAATTTG
*
15411309 TTGTTATTTGCTGCAATT
1 TTGTTATTTGCTACAATT
15411327 CTATTAATAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.16, C:0.11, G:0.18, T:0.55
Consensus pattern (20 bp):
TTGTTATTTGCTACAATTTG
Found at i:15412105 original size:17 final size:17
Alignment explanation
Indices: 15412083--15412115 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
15412073 ATGCCAAATA
15412083 GTTGTTTGCTGCAATTT
1 GTTGTTTGCTGCAATTT
15412100 GTTGTTTGCTGCAATT
1 GTTGTTTGCTGCAATT
15412116 AATTAGTTGT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.12, C:0.12, G:0.24, T:0.52
Consensus pattern (17 bp):
GTTGTTTGCTGCAATTT
Found at i:15413322 original size:19 final size:20
Alignment explanation
Indices: 15413298--15413335 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
15413288 GGTACCACCA
15413298 AAACAT-ATATCA-CATCTTT
1 AAACATCAT-TCATCATCTTT
15413317 AAACATCATTCATCATCTT
1 AAACATCATTCATCATCTT
15413336 ACCACCTTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.39, C:0.24, G:0.00, T:0.37
Consensus pattern (20 bp):
AAACATCATTCATCATCTTT
Found at i:15413679 original size:47 final size:48
Alignment explanation
Indices: 15413564--15413734 Score: 196
Period size: 46 Copynumber: 3.7 Consensus size: 48
15413554 CGCCCCTAAG
* * *
15413564 TGAACTCGGACTCAACTCAACGAGCTCGG--GC-GTTCGCATCCATAAA
1 TGAACTCGGACTCAACTCAACGAGTTCGGATGCAGTT-ACATCCATAAC
*
15413610 TGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT-C-TCAC
1 TGAACTCGGACTCAACTCAACGAGTTCGGATG-C-AGTTACATCCATAAC
* *
15413658 -GAACTCGGACTCAACTCAACGAGTTCGG--GCATTTGCATCCATAAC
1 TGAACTCGGACTCAACTCAACGAGTTCGGATGCAGTTACATCCATAAC
*
15413703 TGAACTCGGACTTAACTCAACGAGTTCGGATG
1 TGAACTCGGACTCAACTCAACGAGTTCGGATG
15413735 TTCAACCATC
Statistics
Matches: 107, Mismatches: 8, Indels: 18
0.80 0.06 0.14
Matches are distributed among these distances:
43 6 0.06
44 2 0.02
45 4 0.04
46 55 0.51
47 28 0.26
48 4 0.04
49 2 0.02
50 3 0.03
51 3 0.03
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.23
Consensus pattern (48 bp):
TGAACTCGGACTCAACTCAACGAGTTCGGATGCAGTTACATCCATAAC
Found at i:15413680 original size:93 final size:93
Alignment explanation
Indices: 15413565--15413734 Score: 295
Period size: 93 Copynumber: 1.8 Consensus size: 93
15413555 GCCCCTAAGT
*
15413565 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAATGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGGCATTCGCATCCATAAATGAACTCGGACTCAACTCAA
15413630 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
* * * *
15413658 GAACTCGGACTCAACTCAACGAGTTCGGGCATTTGCATCCATAACTGAACTCGGACTTAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGGCATTCGCATCCATAAATGAACTCGGACTCAACTCAA
15413723 CGAGTTCGGATG
66 CGAGTTCGGATG
15413735 TTCAACCATC
Statistics
Matches: 72, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGGCATTCGCATCCATAAATGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:15414189 original size:30 final size:30
Alignment explanation
Indices: 15414155--15414214 Score: 75
Period size: 30 Copynumber: 2.0 Consensus size: 30
15414145 ATTTAATACG
15414155 AACTTTAAAAAAATTACACTTTTGCCCCTA
1 AACTTTAAAAAAATTACACTTTTGCCCCTA
*** * *
15414185 AACTTTTGCATAATTACACTTTTTCCCCTA
1 AACTTTAAAAAAATTACACTTTTGCCCCTA
15414215 GGCTCGGGAA
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.33, C:0.25, G:0.03, T:0.38
Consensus pattern (30 bp):
AACTTTAAAAAAATTACACTTTTGCCCCTA
Found at i:15416467 original size:13 final size:13
Alignment explanation
Indices: 15416449--15416474 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
15416439 AATTCAAATT
15416449 TATTATTAGGATA
1 TATTATTAGGATA
15416462 TATTATTAGGATA
1 TATTATTAGGATA
15416475 GGATAATCTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.00, G:0.15, T:0.46
Consensus pattern (13 bp):
TATTATTAGGATA
Found at i:15418719 original size:21 final size:21
Alignment explanation
Indices: 15418644--15418709 Score: 69
Period size: 21 Copynumber: 3.0 Consensus size: 21
15418634 GTCTTGAATT
*
15418644 TGTTAGATATTAAATTTATTA
1 TGTTAGATATTGAATTTATTA
* *
15418665 TGTTTTAAGTTTGTTGAATTTATTA
1 TG--TT-AG-ATATTGAATTTATTA
15418690 TGTTAGATATTGAATTTATT
1 TGTTAGATATTGAATTTATT
15418710 TGGTTGGATA
Statistics
Matches: 36, Mismatches: 5, Indels: 8
0.73 0.10 0.16
Matches are distributed among these distances:
21 14 0.39
22 2 0.06
23 4 0.11
24 2 0.06
25 14 0.39
ACGTcount: A:0.30, C:0.00, G:0.14, T:0.56
Consensus pattern (21 bp):
TGTTAGATATTGAATTTATTA
Found at i:15420006 original size:29 final size:29
Alignment explanation
Indices: 15419959--15420028 Score: 83
Period size: 29 Copynumber: 2.5 Consensus size: 29
15419949 AAATCATTGC
* *
15419959 AATATATGT--AAAAAAATTTGAAGTATA
1 AATATATGTAAAAAAAAATTTAAAATATA
*
15419986 AATTTAT-TAAAAAAATAATTTAAAATATA
1 AATATATGTAAAAAAA-AATTTAAAATATA
15420015 AATATATGTAAAAA
1 AATATATGTAAAAA
15420029 CAGCTTTTTC
Statistics
Matches: 35, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
26 1 0.03
27 6 0.17
28 5 0.14
29 17 0.49
30 6 0.17
ACGTcount: A:0.60, C:0.00, G:0.06, T:0.34
Consensus pattern (29 bp):
AATATATGTAAAAAAAAATTTAAAATATA
Found at i:15420128 original size:19 final size:20
Alignment explanation
Indices: 15420104--15420147 Score: 81
Period size: 19 Copynumber: 2.2 Consensus size: 20
15420094 TCCAAACACT
15420104 AGAAAAGTAAATCA-TTTCC
1 AGAAAAGTAAATCATTTTCC
15420123 AGAAAAGTAAATCATTTTCC
1 AGAAAAGTAAATCATTTTCC
15420143 AGAAA
1 AGAAA
15420148 TTATTTTCTG
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
19 14 0.58
20 10 0.42
ACGTcount: A:0.50, C:0.14, G:0.11, T:0.25
Consensus pattern (20 bp):
AGAAAAGTAAATCATTTTCC
Found at i:15420233 original size:65 final size:65
Alignment explanation
Indices: 15420125--15420256 Score: 228
Period size: 65 Copynumber: 2.0 Consensus size: 65
15420115 TCATTTCCAG
* *
15420125 AAAAGTAAATCATTTTCCAGAAATTATTTTCTGGAAAATATTTTACTAGCAAACAAACGGACCCT
1 AAAAGTAAATCATTTTCCAGAAATTATTTTCCGGAAAACATTTTACTAGCAAACAAACGGACCCT
* *
15420190 AAAAGTAAATCATTTTTCAGAAATTATTTTCCGGAAAACATTTTACTAGCAAACAAACGGAGCCT
1 AAAAGTAAATCATTTTCCAGAAATTATTTTCCGGAAAACATTTTACTAGCAAACAAACGGACCCT
15420255 AA
1 AA
15420257 GTAATAAGTT
Statistics
Matches: 63, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
65 63 1.00
ACGTcount: A:0.42, C:0.17, G:0.11, T:0.30
Consensus pattern (65 bp):
AAAAGTAAATCATTTTCCAGAAATTATTTTCCGGAAAACATTTTACTAGCAAACAAACGGACCCT
Found at i:15421173 original size:23 final size:22
Alignment explanation
Indices: 15421147--15421208 Score: 72
Period size: 22 Copynumber: 2.8 Consensus size: 22
15421137 GCAACGATTT
15421147 TTTATATTAAAATATTTTTTTA
1 TTTATATTAAAATATTTTTTTA
* *
15421169 CTTTA-AATAAAATATTATTTTA
1 -TTTATATTAAAATATTTTTTTA
*
15421191 TTTTTATTAAAAATATTT
1 TTTATATT-AAAATATTT
15421209 AAATATATAT
Statistics
Matches: 32, Mismatches: 5, Indels: 4
0.78 0.12 0.10
Matches are distributed among these distances:
21 3 0.09
22 17 0.53
23 12 0.38
ACGTcount: A:0.40, C:0.02, G:0.00, T:0.58
Consensus pattern (22 bp):
TTTATATTAAAATATTTTTTTA
Found at i:15422117 original size:100 final size:105
Alignment explanation
Indices: 15421911--15422173 Score: 339
Period size: 100 Copynumber: 2.6 Consensus size: 105
15421901 ATTAGGTTAC
** *
15421911 AAATTGTTAGCATTTAG-TATAGGGTTTTGTGATTTTTTAGTAATGTAAATTTTTAAAAAAAAAT
1 AAATTGTTAGTGTTTAGTTATAGTGTTTTGTGATTTTTTAGTAATGT-AATTTTT-AAAAAAAAT
* * *
15421975 AATTTTATAGTTATTTTGTTAGTAATTTATGATTAGATTATAT
64 AA-TTTATAGTTATTTCGATAGTAATTCATGATTAGATTATAT
**
15422018 AAATTGTTAGTGTTTAGTTAT-GTGTTTTGTGATTTTTTAGTAATGT-ATTTTT-TTAAAAA-AA
1 AAATTGTTAGTGTTTAGTTATAGTGTTTTGTGATTTTTTAGTAATGTAATTTTTAAAAAAAATAA
*
15422079 -TTATAGTTATTTCGATAGTAATTCATGATTAGGTTATAT
66 TTTATAGTTATTTCGATAGTAATTCATGATTAGATTATAT
*
15422118 AAATTGTTAGTGTTTAGTT-TAGTGTTTTGTGA-TTTTT--TAATGTAATTTTTATAAAA
1 AAATTGTTAGTGTTTAGTTATAGTGTTTTGTGATTTTTTAGTAATGTAATTTTTAAAAAA
15422174 TGTAATTTTA
Statistics
Matches: 142, Mismatches: 10, Indels: 16
0.85 0.06 0.10
Matches are distributed among these distances:
97 6 0.04
98 6 0.04
99 10 0.07
100 65 0.46
102 2 0.01
103 5 0.04
105 6 0.04
107 39 0.27
108 3 0.02
ACGTcount: A:0.32, C:0.01, G:0.15, T:0.52
Consensus pattern (105 bp):
AAATTGTTAGTGTTTAGTTATAGTGTTTTGTGATTTTTTAGTAATGTAATTTTTAAAAAAAATAA
TTTATAGTTATTTCGATAGTAATTCATGATTAGATTATAT
Found at i:15422602 original size:20 final size:20
Alignment explanation
Indices: 15422577--15422616 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
15422567 TATTAATGAG
15422577 ATAGTAATGAAATTTTTATT
1 ATAGTAATGAAATTTTTATT
15422597 ATAGTAATGAAATTTTTATT
1 ATAGTAATGAAATTTTTATT
15422617 TGATACTCAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.40, C:0.00, G:0.10, T:0.50
Consensus pattern (20 bp):
ATAGTAATGAAATTTTTATT
Found at i:15424267 original size:33 final size:33
Alignment explanation
Indices: 15424230--15424300 Score: 90
Period size: 33 Copynumber: 2.2 Consensus size: 33
15424220 ATCCTAGCTT
* **
15424230 GTATCCACCTCAGTACTCTGCTCCTTC-CGGCCC
1 GTATCCACCGCAGTACTCCACT-CTTCTCGGCCC
*
15424263 GTATCCACCGCCGTACTCCACTCTTCTCGGCCC
1 GTATCCACCGCAGTACTCCACTCTTCTCGGCCC
15424296 GTATC
1 GTATC
15424301 AACTACTGTA
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
32 4 0.12
33 29 0.88
ACGTcount: A:0.13, C:0.45, G:0.15, T:0.27
Consensus pattern (33 bp):
GTATCCACCGCAGTACTCCACTCTTCTCGGCCC
Found at i:15424627 original size:75 final size:74
Alignment explanation
Indices: 15424509--15424742 Score: 274
Period size: 75 Copynumber: 3.1 Consensus size: 74
15424499 TAATGTAAAC
* * * * * *
15424509 AACTTCATATTTATGTAATGAATTTTTTTTCCATTTTATTTATCAATTATATATATATTTTGCAA
1 AACTTTATATTTATGTAATG-ACTTTTTTTCCATTTTATTTATCAATTTTATGT-TTTTTTACAA
*
15424574 TTTAAATAGTC
64 TTTAAATAGTA
* *
15424585 AATTTTGTATTTATGTAATGACTTTTTTTCCATTTTATTTATCAATTTTATGGGTTTTTTTACAA
1 AACTTTATATTTATGTAATGACTTTTTTTCCATTTTATTTATCAATTTTAT--GTTTTTTTACAA
15424650 TTTAAATAGTA
64 TTTAAATAGTA
* * *
15424661 AACTTTATATTTATGTAATGAC--TTTTTCACATTTCAGTTATCAATTTTATGTTTTTTTTTCAA
1 AACTTTATATTTATGTAATGACTTTTTTTC-CATTTTATTTATCAATTTTATG-TTTTTTTACAA
*
15424724 TTTAAATAAATA
64 TTTAAAT-AGTA
15424736 AACTTTA
1 AACTTTA
15424743 GACTAATTTT
Statistics
Matches: 138, Mismatches: 15, Indels: 11
0.84 0.09 0.07
Matches are distributed among these distances:
73 1 0.01
74 23 0.17
75 58 0.42
76 55 0.40
77 1 0.01
ACGTcount: A:0.31, C:0.09, G:0.06, T:0.54
Consensus pattern (74 bp):
AACTTTATATTTATGTAATGACTTTTTTTCCATTTTATTTATCAATTTTATGTTTTTTTACAATT
TAAATAGTA
Found at i:15427627 original size:17 final size:17
Alignment explanation
Indices: 15427605--15427648 Score: 70
Period size: 17 Copynumber: 2.6 Consensus size: 17
15427595 CATTCAGAAG
15427605 CTAACAAAATTAATAAC
1 CTAACAAAATTAATAAC
15427622 CTAACAAAATTAATAAC
1 CTAACAAAATTAATAAC
* *
15427639 ATAATAAAAT
1 CTAACAAAAT
15427649 AACTTTCAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
17 25 1.00
ACGTcount: A:0.61, C:0.14, G:0.00, T:0.25
Consensus pattern (17 bp):
CTAACAAAATTAATAAC
Found at i:15429084 original size:21 final size:20
Alignment explanation
Indices: 15429059--15429099 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
15429049 CACTTTTAAA
15429059 TTTAATAAAAATAAATTATTT
1 TTTAAT-AAAATAAATTATTT
* *
15429080 TTTAATCAAATAATTTATTT
1 TTTAATAAAATAAATTATTT
15429100 AATATTAAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 12 0.67
21 6 0.33
ACGTcount: A:0.46, C:0.02, G:0.00, T:0.51
Consensus pattern (20 bp):
TTTAATAAAATAAATTATTT
Found at i:15429518 original size:29 final size:29
Alignment explanation
Indices: 15429472--15429553 Score: 87
Period size: 29 Copynumber: 2.8 Consensus size: 29
15429462 CCATATATGC
* *
15429472 TTCATGATTTTATAATTTAGTCCTTATTCTT
1 TTCAT-ATTTTAAAATTTAGTCCTT-TACTT
15429503 TT-AT-TTTTAGAAATTTAGTCCCTTTACTT
1 TTCATATTTTA-AAATTTAGT-CCTTTACTT
*
15429532 TTCATATTTTAAAATTAAGTCC
1 TTCATATTTTAAAATTTAGTCC
15429554 AATTGTTAAC
Statistics
Matches: 44, Mismatches: 3, Indels: 10
0.77 0.05 0.18
Matches are distributed among these distances:
28 5 0.11
29 16 0.36
30 16 0.36
31 7 0.16
ACGTcount: A:0.27, C:0.13, G:0.06, T:0.54
Consensus pattern (29 bp):
TTCATATTTTAAAATTTAGTCCTTTACTT
Found at i:15429553 original size:30 final size:31
Alignment explanation
Indices: 15429472--15429553 Score: 91
Period size: 30 Copynumber: 2.7 Consensus size: 31
15429462 CCATATATGC
* *
15429472 TTCATGATTTTATAATTTAGT-CCTTATTCTT
1 TTCAT-ATTTTAAAATTTAGTCCCTTATACTT
15429503 TT-AT-TTTTAGAAATTTAGTCCCTT-TACTT
1 TTCATATTTTA-AAATTTAGTCCCTTATACTT
*
15429532 TTCATATTTTAAAATTAAGTCC
1 TTCATATTTTAAAATTTAGTCC
15429554 AATTGTTAAC
Statistics
Matches: 44, Mismatches: 3, Indels: 9
0.79 0.05 0.16
Matches are distributed among these distances:
28 5 0.11
29 14 0.32
30 18 0.41
31 7 0.16
ACGTcount: A:0.27, C:0.13, G:0.06, T:0.54
Consensus pattern (31 bp):
TTCATATTTTAAAATTTAGTCCCTTATACTT
Found at i:15429840 original size:28 final size:29
Alignment explanation
Indices: 15429791--15429856 Score: 73
Period size: 28 Copynumber: 2.3 Consensus size: 29
15429781 ACCTCCTAAA
*
15429791 AAAATAA-AAAAAGATATATTTAATTTTT
1 AAAATAATAAAAAGATATATTTAACTTTT
**
15429819 AAAATAATAAAATTATAT-TTTAACTTTT
1 AAAATAATAAAAAGATATATTTAACTTTT
* *
15429847 CAAATTATAA
1 AAAATAATAA
15429857 TGTAATTTCA
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
28 24 0.75
29 8 0.25
ACGTcount: A:0.55, C:0.03, G:0.02, T:0.41
Consensus pattern (29 bp):
AAAATAATAAAAAGATATATTTAACTTTT
Found at i:15436891 original size:16 final size:16
Alignment explanation
Indices: 15436870--15436901 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
15436860 GGTAAGCCAT
15436870 ATTTACTCTCGAAAGA
1 ATTTACTCTCGAAAGA
15436886 ATTTACTCTCGAAAGA
1 ATTTACTCTCGAAAGA
15436902 GTAGAAGCGT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.38, C:0.19, G:0.12, T:0.31
Consensus pattern (16 bp):
ATTTACTCTCGAAAGA
Found at i:15439589 original size:33 final size:33
Alignment explanation
Indices: 15439552--15439635 Score: 91
Period size: 33 Copynumber: 2.5 Consensus size: 33
15439542 AAATAGTAAT
* *
15439552 AAAATAACAATAAAATAAG-AGTTATATAATATC
1 AAAATAA-AATAAAATAAGTAGTAATATAATAAC
*
15439585 AAAATAAAAAAATAAT-AGTAGTAATATAATAAC
1 AAAATAAAATAA-AATAAGTAGTAATATAATAAC
*
15439618 AACATAATAATAAAATAA
1 AAAATAA-AATAAAATAA
15439636 CAATGGAAAA
Statistics
Matches: 42, Mismatches: 5, Indels: 7
0.78 0.09 0.13
Matches are distributed among these distances:
32 6 0.14
33 31 0.74
34 5 0.12
ACGTcount: A:0.65, C:0.05, G:0.05, T:0.25
Consensus pattern (33 bp):
AAAATAAAATAAAATAAGTAGTAATATAATAAC
Found at i:15439635 original size:11 final size:11
Alignment explanation
Indices: 15439540--15439635 Score: 52
Period size: 11 Copynumber: 8.7 Consensus size: 11
15439530 TTAATGCCTT
*
15439540 TAAAATAGTAA
1 TAAAATAATAA
*
15439551 TAAAATAACAA
1 TAAAATAATAA
* *
15439562 TAAAATAAGAG
1 TAAAATAATAA
* *
15439573 TTATATAAT-A
1 TAAAATAATAA
15439583 TCAAAATAA-AA
1 T-AAAATAATAA
* * *
15439594 AAATAATAGTAG
1 TAA-AATAATAA
*
15439606 TAATATAATAA
1 TAAAATAATAA
* *
15439617 CAACATAATAA
1 TAAAATAATAA
15439628 TAAAATAA
1 TAAAATAA
15439636 CAATGGAAAA
Statistics
Matches: 60, Mismatches: 21, Indels: 8
0.67 0.24 0.09
Matches are distributed among these distances:
10 3 0.05
11 54 0.90
12 3 0.05
ACGTcount: A:0.65, C:0.04, G:0.05, T:0.26
Consensus pattern (11 bp):
TAAAATAATAA
Found at i:15440084 original size:12 final size:12
Alignment explanation
Indices: 15440067--15440102 Score: 54
Period size: 12 Copynumber: 3.0 Consensus size: 12
15440057 CAACTCTGAT
*
15440067 TTTCCCTTTCCC
1 TTTCCCTTCCCC
15440079 TTTCCCTTCCCC
1 TTTCCCTTCCCC
*
15440091 TTCCCCTTCCCC
1 TTTCCCTTCCCC
15440103 CATCCTTGTC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
12 22 1.00
ACGTcount: A:0.00, C:0.58, G:0.00, T:0.42
Consensus pattern (12 bp):
TTTCCCTTCCCC
Found at i:15440094 original size:17 final size:17
Alignment explanation
Indices: 15440068--15440101 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
15440058 AACTCTGATT
* *
15440068 TTCCCTTTCCCTTTCCC
1 TTCCCCTTCCCCTTCCC
15440085 TTCCCCTTCCCCTTCCC
1 TTCCCCTTCCCCTTCCC
15440102 CCATCCTTGT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.00, C:0.59, G:0.00, T:0.41
Consensus pattern (17 bp):
TTCCCCTTCCCCTTCCC
Found at i:15441356 original size:5 final size:5
Alignment explanation
Indices: 15441346--15441379 Score: 50
Period size: 5 Copynumber: 6.6 Consensus size: 5
15441336 TACATTGTGA
*
15441346 AAAAT AAAAT AAAAT AACAT AAAAT AAAAAT AAA
1 AAAAT AAAAT AAAAT AAAAT AAAAT -AAAAT AAA
15441380 GAACACACAG
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
5 21 0.81
6 5 0.19
ACGTcount: A:0.79, C:0.03, G:0.00, T:0.18
Consensus pattern (5 bp):
AAAAT
Found at i:15441384 original size:20 final size:20
Alignment explanation
Indices: 15441346--15441384 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
15441336 TACATTGTGA
*
15441346 AAAATAAAATAAAATAACAT
1 AAAATAAAATAAAAGAACAT
15441366 AAAATAAAA-ATAAAGAACA
1 AAAATAAAATA-AAAGAACA
15441385 CACAGATTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 1 0.06
20 16 0.94
ACGTcount: A:0.77, C:0.05, G:0.03, T:0.15
Consensus pattern (20 bp):
AAAATAAAATAAAAGAACAT
Found at i:15446580 original size:49 final size:49
Alignment explanation
Indices: 15446514--15446659 Score: 193
Period size: 51 Copynumber: 2.9 Consensus size: 49
15446504 TAGCCAAAGC
* * *
15446514 TATCTGGTACGCATAGTAGCCTGCACATAGTACTACACATGCGACCAAT
1 TATCCGGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCAAT
* * *
15446563 TATCCGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGATCACAAT
1 TATCCGGTACACATAGTAGCCTGCACTTAGTACTACACATGCGA-C-CAAT
* * *
15446614 TTTCGGGTACCCATAGTAGCCTGCACTTAGTACTACACATGCGACC
1 TATCCGGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACC
15446660 TCACAATAGA
Statistics
Matches: 83, Mismatches: 12, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
49 39 0.47
50 2 0.02
51 42 0.51
ACGTcount: A:0.28, C:0.28, G:0.18, T:0.25
Consensus pattern (49 bp):
TATCCGGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCAAT
Found at i:15448791 original size:5 final size:5
Alignment explanation
Indices: 15448781--15448819 Score: 69
Period size: 5 Copynumber: 7.6 Consensus size: 5
15448771 CAATTTGTGA
15448781 AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAAAAT AAA
1 AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT -AAAAT AAA
15448820 GAACACACAG
Statistics
Matches: 33, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
5 28 0.85
6 5 0.15
ACGTcount: A:0.82, C:0.00, G:0.00, T:0.18
Consensus pattern (5 bp):
AAAAT
Found at i:15450604 original size:29 final size:30
Alignment explanation
Indices: 15450534--15450604 Score: 76
Period size: 31 Copynumber: 2.4 Consensus size: 30
15450524 ATGGTTATGC
15450534 CATTTCTTTAAATTCACGGAATTTAATTTCA
1 CATTTCTTTAAATTCAC-GAATTTAATTTCA
* *
15450565 C-TAATCTTTAAATTCA-G-ATTTCATTATCA
1 CAT-TTCTTTAAATTCACGAATTTAATT-TCA
15450594 CATTTCTTTAA
1 CATTTCTTTAA
15450605 GTTATATCAT
Statistics
Matches: 34, Mismatches: 3, Indels: 8
0.76 0.07 0.18
Matches are distributed among these distances:
28 7 0.21
29 12 0.35
30 2 0.06
31 13 0.38
ACGTcount: A:0.32, C:0.17, G:0.04, T:0.46
Consensus pattern (30 bp):
CATTTCTTTAAATTCACGAATTTAATTTCA
Found at i:15452166 original size:32 final size:32
Alignment explanation
Indices: 15452098--15452178 Score: 92
Period size: 32 Copynumber: 2.5 Consensus size: 32
15452088 TGAAATTAGT
* *
15452098 TTGTTGGATTTTGAAATTATTATGTCTTCAAT
1 TTGTTGGATATTGAAATTATTATGTCTTCAAC
* * *
15452130 TTGTTAGATATTGAATTTATTATGT-TTTAAGC
1 TTGTTGGATATTGAAATTATTATGTCTTCAA-C
*
15452162 TTGTTGGATATTAAAAT
1 TTGTTGGATATTGAAAT
15452179 GATTGACAAT
Statistics
Matches: 40, Mismatches: 8, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
31 4 0.10
32 36 0.90
ACGTcount: A:0.28, C:0.04, G:0.16, T:0.52
Consensus pattern (32 bp):
TTGTTGGATATTGAAATTATTATGTCTTCAAC
Found at i:15454491 original size:18 final size:19
Alignment explanation
Indices: 15454468--15454506 Score: 53
Period size: 18 Copynumber: 2.1 Consensus size: 19
15454458 CTTGGCCCAT
* *
15454468 TACAGTATCA-ATATTCAG
1 TACAGTAACAGATATACAG
15454486 TACAGTAACAGATATACAG
1 TACAGTAACAGATATACAG
15454505 TA
1 TA
15454507 TCAAATCCTA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
18 9 0.50
19 9 0.50
ACGTcount: A:0.44, C:0.15, G:0.13, T:0.28
Consensus pattern (19 bp):
TACAGTAACAGATATACAG
Found at i:15454979 original size:17 final size:18
Alignment explanation
Indices: 15454948--15454983 Score: 65
Period size: 17 Copynumber: 2.1 Consensus size: 18
15454938 CATGTTGTTT
15454948 GCCCGTGTGGGCCCACAC
1 GCCCGTGTGGGCCCACAC
15454966 GCCCGTGT-GGCCCACAC
1 GCCCGTGTGGGCCCACAC
15454983 G
1 G
15454984 ACCTAAAATG
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
17 10 0.56
18 8 0.44
ACGTcount: A:0.11, C:0.44, G:0.33, T:0.11
Consensus pattern (18 bp):
GCCCGTGTGGGCCCACAC
Found at i:15458466 original size:17 final size:17
Alignment explanation
Indices: 15458444--15458478 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 17
15458434 CTATCTCTCA
15458444 TTTATCTATCTATTTTT
1 TTTATCTATCTATTTTT
*
15458461 TTTATCTATTTATTTTT
1 TTTATCTATCTATTTTT
15458478 T
1 T
15458479 CTTTAGTTAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.17, C:0.09, G:0.00, T:0.74
Consensus pattern (17 bp):
TTTATCTATCTATTTTT
Found at i:15459258 original size:15 final size:17
Alignment explanation
Indices: 15459231--15459272 Score: 52
Period size: 16 Copynumber: 2.6 Consensus size: 17
15459221 TGGCGGCACC
* *
15459231 ATTATT-TTTTTAATAA
1 ATTATTATTTTAAAAAA
15459247 ATT-TTATTTTAAAAAA
1 ATTATTATTTTAAAAAA
15459263 ATTATTATTT
1 ATTATTATTT
15459273 AATTAGTGGT
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
15 2 0.09
16 14 0.64
17 6 0.27
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (17 bp):
ATTATTATTTTAAAAAA
Found at i:15459326 original size:11 final size:11
Alignment explanation
Indices: 15459310--15459334 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
15459300 CATCACTTTT
15459310 ATATGGTCAAA
1 ATATGGTCAAA
15459321 ATATGGTCAAA
1 ATATGGTCAAA
15459332 ATA
1 ATA
15459335 CAGGTCAACT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.48, C:0.08, G:0.16, T:0.28
Consensus pattern (11 bp):
ATATGGTCAAA
Found at i:15460085 original size:109 final size:110
Alignment explanation
Indices: 15459928--15460465 Score: 544
Period size: 110 Copynumber: 5.0 Consensus size: 110
15459918 TATGAATATA
* *
15459928 ATTTTTT--AATTATTTTAAAATTATTTTGTTAGTAATTTATGGTTAGGTTATAAATTGTTTGTG
1 ATTTTTTAAAATTATTTTAAAGTTATTTTGTTAGTAATTTATGATTAGGTTATAAATTGTTTGTG
15459991 TTTAGTTTAGTG-TT-TTGTGAATTTTTATCAATGTAAATTTTTTG
66 TTTAGTTTAGTGTTTATTGTGAATTTTTATCAATGT-AATTTTTTG
* * *
15460035 CTTTTTTAAAATTATTTTATAGTTATTTTGTTAGTAATTTATGATTAGGTTATAAATTATTTGTG
1 ATTTTTTAAAATTATTTTAAAGTTATTTTGTTAGTAATTTATGATTAGGTTATAAATTGTTTGTG
* * *
15460100 TTTAATTTAGTGTTT-TTGTGATTTTTTA-CGAATGTACTTTTTTG
66 TTTAGTTTAGTGTTTATTGTGAATTTTTATC-AATGTAATTTTTTG
* ** *
15460144 TATTTTTTAAAATTATTTTTAAGACATTTTGTTAGTAATTTATGGTTAGGTTATAAATTGTTTGT
1 -ATTTTTTAAAATTATTTTAAAGTTATTTTGTTAGTAATTTATGATTAGGTTATAAATTG--T-T
* *
15460209 ATGTGTTTAGTTTTA-TGTTTATTGTG-ATTTTT-T--ATG-AA---TATA
62 -TGTGTTTAG-TTTAGTGTTTATTGTGAATTTTTATCAATGTAATTTTTTG
* *
15460251 ATTTTTT--AATTATTTTAAAATTATTTTGTTAGTAATTTATGATTATGTTATAAATTGTTTGTG
1 ATTTTTTAAAATTATTTTAAAGTTATTTTGTTAGTAATTTATGATTAGGTTATAAATTGTTTGTG
* * * *
15460314 TTTAGTTTAATGTTTATTGTGACTTGTTATAAATGTAATTTTTTTTTG
66 TTTAGTTTAGTGTTTATTGTGAATTTTTATCAATGTAA---TTTTTTG
* * * * *
15460362 -TGTTTTTTAAATTAGTTTAAAGTTATTTTGTTAGTAATTTATAATTAGATTATAAATTATTT-T
1 AT-TTTTTAAAATTATTTTAAAGTTATTTTGTTAGTAATTTATGATTAGGTTATAAATTGTTTGT
* * * *
15460425 -TTTAGTTTAATGTGTATTGT-TATTTGTTAT-AATATAATTTT
65 GTTTAGTTTAGTGTTTATTGTGAATTT-TTATCAATGTAATTTT
15460466 ATTTGTTATT
Statistics
Matches: 362, Mismatches: 41, Indels: 56
0.79 0.09 0.12
Matches are distributed among these distances:
99 4 0.01
100 20 0.06
101 5 0.01
102 2 0.01
104 47 0.13
105 2 0.01
106 7 0.02
107 12 0.03
109 72 0.20
110 81 0.22
111 33 0.09
112 2 0.01
113 48 0.13
114 18 0.05
115 9 0.02
ACGTcount: A:0.27, C:0.01, G:0.13, T:0.58
Consensus pattern (110 bp):
ATTTTTTAAAATTATTTTAAAGTTATTTTGTTAGTAATTTATGATTAGGTTATAAATTGTTTGTG
TTTAGTTTAGTGTTTATTGTGAATTTTTATCAATGTAATTTTTTG
Found at i:15460186 original size:110 final size:109
Alignment explanation
Indices: 15459928--15460449 Score: 497
Period size: 109 Copynumber: 4.8 Consensus size: 109
15459918 TATGAATATA
* * *
15459928 ATTTTTT-AATTATTTTAAAATTATTTTGTTAGTAATTTATGGTTAGGTTATAAATTGTTTGTGT
1 ATTTTTTAAATTATTTTAAGA-TATTTTGTTAGTAATTTATGATTAGGTTATAAATTATTTGTGT
*
15459992 TTAGTTTAGTG-TT-TTGTGAATTTTTATC-AATGTAAATTTTTTGCT
65 TTAGTTTAGTGTTTATTGTGATTTTTTA-CGAATGT-AATTTTTTG-T
* *
15460037 -TTTTTAAAATTATTTTATAGTTATTTTGTTAGTAATTTATGATTAGGTTATAAATTATTTGTGT
1 ATTTTTTAAATTATTTTA-AGATATTTTGTTAGTAATTTATGATTAGGTTATAAATTATTTGTGT
* *
15460101 TTAATTTAGTGTTT-TTGTGATTTTTTACGAATGTACTTTTTTGT
65 TTAGTTTAGTGTTTATTGTGATTTTTTACGAATGTAATTTTTTGT
* * *
15460145 ATTTTTTAAAATTATTTTTAAGACATTTTGTTAGTAATTTATGGTTAGGTTATAAATTGTTTGTA
1 ATTTTTT-AAATTA-TTTTAAGATATTTTGTTAGTAATTTATGATTAGGTTATAAA-T-TAT-T-
* *
15460210 TGTGTTTAGTTTTA-TGTTTATTGTGATTTTTT----ATG-AA---TAT-A
60 TGTGTTTAG-TTTAGTGTTTATTGTGATTTTTTACGAATGTAATTTTTTGT
* * *
15460251 ATTTTTT-AATTATTTTAAAATTATTTTGTTAGTAATTTATGATTATGTTATAAATTGTTTGTGT
1 ATTTTTTAAATTATTTTAAGA-TATTTTGTTAGTAATTTATGATTAGGTTATAAATTATTTGTGT
* * * **
15460315 TTAGTTTAATGTTTATTGTGACTTGTTATAAATGTAATTTTTTTTTGT
65 TTAGTTTAGTGTTTATTGTGATTTTTTACGAATGTAA---TTTTTTGT
* * * * *
15460363 GTTTTTTAAATTAGTTTAAAGTTATTTTGTTAGTAATTTATAATTAGATTATAAATTATTT-T-T
1 ATTTTTTAAATTA-TTTTAAGATATTTTGTTAGTAATTTATGATTAGGTTATAAATTATTTGTGT
* * *
15460426 TTAGTTTAATGTGTATTGTTATTT
65 TTAGTTTAGTGTTTATTGTGATTT
15460450 GTTATAATAT
Statistics
Matches: 347, Mismatches: 37, Indels: 56
0.79 0.08 0.13
Matches are distributed among these distances:
99 4 0.01
100 25 0.07
101 1 0.00
102 2 0.01
103 8 0.02
104 38 0.11
105 2 0.01
106 7 0.02
107 2 0.01
108 6 0.02
109 75 0.22
110 60 0.17
111 33 0.10
112 9 0.03
113 41 0.12
114 18 0.05
115 16 0.05
ACGTcount: A:0.27, C:0.01, G:0.14, T:0.58
Consensus pattern (109 bp):
ATTTTTTAAATTATTTTAAGATATTTTGTTAGTAATTTATGATTAGGTTATAAATTATTTGTGTT
TAGTTTAGTGTTTATTGTGATTTTTTACGAATGTAATTTTTTGT
Found at i:15460360 original size:104 final size:104
Alignment explanation
Indices: 15459676--15460465 Score: 742
Period size: 104 Copynumber: 7.5 Consensus size: 104
15459666 AGTTATTTTT
* * * * *
15459676 TTTGTATTTAGTTTAGTG-TT-TTGTGATTTGTTATGAATGT-ATTTTTTTTATAATTATTTTAA
1 TTTGTGTTTAGTTTAATGTTTATTGTGATTTTTTATGAATATAATTTTTTTTTTAATTATTTTAA
* *
15459738 AGTTATTTTGTTAGTAATTTATAATTAGGTTATAAATTG
66 AATTATTTTGTTAGTAATTTATGATTAGGTTATAAATTG
*
15459777 TTTGTATGTGTTTAGTTTTATGTTTATTGTGATTTTTTATGAATATAA----TTTTTTAATTATT
1 --T-T-TGTGTTTAGTTTAATGTTTATTGTGATTTTTTATGAATATAATTTTTTTTTTAATTATT
*
15459838 TTAAAATTATTTTGTTAGTAATTTATGGTTAGGTTATAAATTG
62 TTAAAATTATTTTGTTAGTAATTTATGATTAGGTTATAAATTG
*
15459881 TTTGTATGTGTTTAGTTTTATGTTTATTGTGATTTTTTATGAATATAA----TTTTTTAATTATT
1 --T-T-TGTGTTTAGTTTAATGTTTATTGTGATTTTTTATGAATATAATTTTTTTTTTAATTATT
*
15459942 TTAAAATTATTTTGTTAGTAATTTATGGTTAGGTTATAAATTG
62 TTAAAATTATTTTGTTAGTAATTTATGATTAGGTTATAAATTG
* * * *
15459985 TTTGTGTTTAGTTTAGTG-TT-TTGTGAATTTTTATCAATGTAAATTTTTTGCTTTTTTAAAATT
1 TTTGTGTTTAGTTTAATGTTTATTGTGATTTTTTATGAATAT-AA--TTTT--TTTTTT--AATT
* * *
15460048 ATTTTATAGTTATTTTGTTAGTAATTTATGATTAGGTTATAAATTA
59 ATTTTAAAATTATTTTGTTAGTAATTTATGATTAGGTTATAAATTG
* * * **
15460094 TTTGTGTTTAATTTAGTGTTT-TTGTGATTTTTTACGAATGTACTTTTTTGTATTTTTTAAAATT
1 TTTGTGTTTAGTTTAATGTTTATTGTGATTTTTTATGAA--TA-TAATTT-T-TTTTTT--AATT
* * *
15460158 ATTTTTAAGA-CATTTTGTTAGTAATTTATGGTTAGGTTATAAATTG
59 A-TTTTAAAATTATTTTGTTAGTAATTTATGATTAGGTTATAAATTG
*
15460204 TTTGTATGTGTTTAGTTTTATGTTTATTGTGATTTTTTATGAATATAA----TTTTTTAATTATT
1 --T-T-TGTGTTTAGTTTAATGTTTATTGTGATTTTTTATGAATATAATTTTTTTTTTAATTATT
*
15460265 TTAAAATTATTTTGTTAGTAATTTATGATTATGTTATAAATTG
62 TTAAAATTATTTTGTTAGTAATTTATGATTAGGTTATAAATTG
* * **
15460308 TTTGTGTTTAGTTTAATGTTTATTGTGACTTGTTATAAATGTAATTTTTTTTTGTGTTTTTTAAA
1 TTTGTGTTTAGTTTAATGTTTATTGTGA-TT-TT-T-TATG-AA-TATAATTT-T-TTTTTT-AA
* * * * *
15460373 TTAGTTTAAAGTTATTTTGTTAGTAATTTATAATTAGATTATAAATTA
57 TTATTTTAAAATTATTTTGTTAGTAATTTATGATTAGGTTATAAATTG
* * *
15460421 TTT-T-TTTAGTTTAATGTGTATTGTTATTTGTTAT-AATATAATTTT
1 TTTGTGTTTAGTTTAATGTTTATTGTGATTTTTTATGAATATAATTTT
15460466 ATTTGTTATT
Statistics
Matches: 586, Mismatches: 60, Indels: 82
0.80 0.08 0.11
Matches are distributed among these distances:
98 17 0.03
99 4 0.01
100 39 0.07
101 4 0.01
102 4 0.01
103 10 0.02
104 203 0.35
105 17 0.03
106 10 0.02
107 26 0.04
108 2 0.00
109 64 0.11
110 67 0.11
111 26 0.04
112 10 0.02
113 51 0.09
114 16 0.03
115 16 0.03
ACGTcount: A:0.27, C:0.01, G:0.14, T:0.59
Consensus pattern (104 bp):
TTTGTGTTTAGTTTAATGTTTATTGTGATTTTTTATGAATATAATTTTTTTTTTAATTATTTTAA
AATTATTTTGTTAGTAATTTATGATTAGGTTATAAATTG
Found at i:15460409 original size:33 final size:33
Alignment explanation
Indices: 15460367--15460430 Score: 87
Period size: 34 Copynumber: 1.9 Consensus size: 33
15460357 TTTTGTGTTT
15460367 TTTAAATTAG-TT-TAAAGTTATTTTGTTAGTAA
1 TTTAAATTAGATTATAAA-TTATTTTGTTAGTAA
*
15460399 TTTATAATTAGATTATAAATTATTTTTTTAGT
1 TTTA-AATTAGATTATAAATTATTTTGTTAGT
15460431 TTAATGTGTA
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
32 4 0.14
33 6 0.21
34 14 0.50
35 4 0.14
ACGTcount: A:0.34, C:0.00, G:0.09, T:0.56
Consensus pattern (33 bp):
TTTAAATTAGATTATAAATTATTTTGTTAGTAA
Found at i:15460484 original size:20 final size:20
Alignment explanation
Indices: 15460411--15460474 Score: 62
Period size: 20 Copynumber: 3.2 Consensus size: 20
15460401 TATAATTAGA
15460411 TTATAA-ATTATTTT-TTTAG
1 TTATAATATTATTTTATTT-G
*
15460430 TT-TAATGTGTATTGTTATTTG
1 TTATAATAT-TATT-TTATTTG
*
15460451 TTATAATATAATTTTATTTG
1 TTATAATATTATTTTATTTG
15460471 TTAT
1 TTAT
15460475 TGATTTATTT
Statistics
Matches: 37, Mismatches: 3, Indels: 9
0.76 0.06 0.18
Matches are distributed among these distances:
18 3 0.08
19 3 0.08
20 15 0.41
21 8 0.22
22 8 0.22
ACGTcount: A:0.28, C:0.00, G:0.09, T:0.62
Consensus pattern (20 bp):
TTATAATATTATTTTATTTG
Found at i:15462242 original size:39 final size:39
Alignment explanation
Indices: 15462188--15462267 Score: 151
Period size: 39 Copynumber: 2.1 Consensus size: 39
15462178 ATGTGGAACA
15462188 ATTGGTTGGGGCAGGTACCTCAGATGGATCGTGCTTTGG
1 ATTGGTTGGGGCAGGTACCTCAGATGGATCGTGCTTTGG
*
15462227 ATTGGTTGGGGCAGGTTCCTCAGATGGATCGTGCTTTGG
1 ATTGGTTGGGGCAGGTACCTCAGATGGATCGTGCTTTGG
15462266 AT
1 AT
15462268 CTGTAACCCT
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
39 40 1.00
ACGTcount: A:0.15, C:0.15, G:0.38, T:0.33
Consensus pattern (39 bp):
ATTGGTTGGGGCAGGTACCTCAGATGGATCGTGCTTTGG
Found at i:15467424 original size:17 final size:18
Alignment explanation
Indices: 15467382--15467426 Score: 74
Period size: 18 Copynumber: 2.6 Consensus size: 18
15467372 TTTAGTATAA
15467382 TGGGCCCACATGCCCGTG
1 TGGGCCCACATGCCCGTG
*
15467400 TGGGCCCACATGCCCTTG
1 TGGGCCCACATGCCCGTG
15467418 T-GGCCCACA
1 TGGGCCCACA
15467427 CGCCTAGATT
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
17 8 0.31
18 18 0.69
ACGTcount: A:0.13, C:0.40, G:0.29, T:0.18
Consensus pattern (18 bp):
TGGGCCCACATGCCCGTG
Found at i:15475855 original size:17 final size:18
Alignment explanation
Indices: 15475817--15475855 Score: 53
Period size: 17 Copynumber: 2.2 Consensus size: 18
15475807 CGTGTAGAGT
*
15475817 GCCCGTGTGGGCCAACAC
1 GCCCGTGTGGGCCAACAA
*
15475835 GCCCGTGT-GGCCCACAA
1 GCCCGTGTGGGCCAACAA
15475852 GCCC
1 GCCC
15475856 AATTTGGCCT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
17 11 0.58
18 8 0.42
ACGTcount: A:0.15, C:0.44, G:0.31, T:0.10
Consensus pattern (18 bp):
GCCCGTGTGGGCCAACAA
Found at i:15477090 original size:39 final size:39
Alignment explanation
Indices: 15477047--15477124 Score: 138
Period size: 39 Copynumber: 2.0 Consensus size: 39
15477037 ATAGTGGTTT
* *
15477047 CAGTTTTCCTTTATGGCTAAACCGAAGAACTTTTTTCCA
1 CAGTTTTCCTTTATGGCCAAACCGAAGAACTTTCTTCCA
15477086 CAGTTTTCCTTTATGGCCAAACCGAAGAACTTTCTTCCA
1 CAGTTTTCCTTTATGGCCAAACCGAAGAACTTTCTTCCA
15477125 AGGTGATACT
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 37 1.00
ACGTcount: A:0.26, C:0.26, G:0.13, T:0.36
Consensus pattern (39 bp):
CAGTTTTCCTTTATGGCCAAACCGAAGAACTTTCTTCCA
Found at i:15490715 original size:27 final size:27
Alignment explanation
Indices: 15490685--15491214 Score: 643
Period size: 27 Copynumber: 19.6 Consensus size: 27
15490675 AATCTCATAT
* *
15490685 CTGTAGGCTAGTATTACTGAAATACCC
1 CTGTAGGGTAGAATTACTGAAATACCC
* *
15490712 CTGTAAGGTAGAATTA-TCGAAATATCC
1 CTGTAGGGTAGAATTACT-GAAATACCC
* **
15490739 CTGTAGGGTAAAATTACCAAAATACCC
1 CTGTAGGGTAGAATTACTGAAATACCC
*
15490766 CTGTAGGGTAGAATTACCGAAATACCC
1 CTGTAGGGTAGAATTACTGAAATACCC
* * *
15490793 TTGTAGGGTAGAAATA-TCGAAATACCT
1 CTGTAGGGTAGAATTACT-GAAATACCC
15490820 CTGTAGGGTAGAATTACTGAAATACCC
1 CTGTAGGGTAGAATTACTGAAATACCC
* * *
15490847 TTGTAGGGTAGAAATACAGAAATACCC
1 CTGTAGGGTAGAATTACTGAAATACCC
* **
15490874 CTATAGGGTAGAATTACTGAAATATGC
1 CTGTAGGGTAGAATTACTGAAATACCC
*
15490901 CTGTAGGGTAGAATTACTGATATACCC
1 CTGTAGGGTAGAATTACTGAAATACCC
* * *
15490928 TTGTAGGGTAGAAATACCGAAATACCC
1 CTGTAGGGTAGAATTACTGAAATACCC
* *
15490955 ATGTAGAGTAGAATTACTGAAATACCC
1 CTGTAGGGTAGAATTACTGAAATACCC
* * *
15490982 TTGTAAGGTAGAAATACTGAAATACCC
1 CTGTAGGGTAGAATTACTGAAATACCC
*
15491009 CTGTAGGGTGGAATTACTGAAATACCC
1 CTGTAGGGTAGAATTACTGAAATACCC
15491036 CTGTAGGGTAGAATTA-TCGAAATACCC
1 CTGTAGGGTAGAATTACT-GAAATACCC
* * *
15491063 TTGTAGGGTAGAAATACCGAAATACCC
1 CTGTAGGGTAGAATTACTGAAATACCC
* *
15491090 CTGTAAGGTATAATTACTGAAATACCC
1 CTGTAGGGTAGAATTACTGAAATACCC
*
15491117 CTGTAGGGTAGAATTATTGAAATACCC
1 CTGTAGGGTAGAATTACTGAAATACCC
* *
15491144 TTGTAGGGTAGAAATACTGAAATACCC
1 CTGTAGGGTAGAATTACTGAAATACCC
* * *
15491171 CTGTAGGGTAGATTTACCGAGATACCC
1 CTGTAGGGTAGAATTACTGAAATACCC
* * *
15491198 TTGTGGGGTAAAATTAC
1 CTGTAGGGTAGAATTAC
15491215 CATTTTGCCC
Statistics
Matches: 426, Mismatches: 71, Indels: 12
0.84 0.14 0.02
Matches are distributed among these distances:
26 2 0.00
27 423 0.99
28 1 0.00
ACGTcount: A:0.35, C:0.17, G:0.21, T:0.27
Consensus pattern (27 bp):
CTGTAGGGTAGAATTACTGAAATACCC
Found at i:15492112 original size:19 final size:19
Alignment explanation
Indices: 15492076--15492114 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
15492066 TTTTCATCAT
* *
15492076 AGTAAAATAAAATAATAAA
1 AGTAAAACAAAACAATAAA
*
15492095 AGTAAAACAAAACCATAAA
1 AGTAAAACAAAACAATAAA
15492114 A
1 A
15492115 ATAATTAAAA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.72, C:0.08, G:0.05, T:0.15
Consensus pattern (19 bp):
AGTAAAACAAAACAATAAA
Found at i:15492626 original size:28 final size:29
Alignment explanation
Indices: 15492553--15492640 Score: 94
Period size: 28 Copynumber: 3.1 Consensus size: 29
15492543 AGCATGGCTG
* * * *
15492553 CCAGATACAGA-AA-ATGTGACAGAGTCA
1 CCAGATACAGATAATTTGTGGCATAGCCA
*
15492580 CCAGATACAGATATTTTGTGGCAGT-GCCA
1 CCAGATACAGATAATTTGTGGCA-TAGCCA
15492609 CCAGA-ACAGATAATTTGTGGCATAGCCA
1 CCAGATACAGATAATTTGTGGCATAGCCA
15492637 CCAG
1 CCAG
15492641 GACGCTTCCT
Statistics
Matches: 51, Mismatches: 6, Indels: 7
0.80 0.09 0.11
Matches are distributed among these distances:
27 12 0.24
28 25 0.49
29 14 0.27
ACGTcount: A:0.35, C:0.22, G:0.23, T:0.20
Consensus pattern (29 bp):
CCAGATACAGATAATTTGTGGCATAGCCA
Found at i:15494666 original size:27 final size:27
Alignment explanation
Indices: 15494636--15494712 Score: 100
Period size: 27 Copynumber: 2.9 Consensus size: 27
15494626 ATTCTGTTAA
* *
15494636 GTGGCTTTGCCACATTATCTGTTTCTG
1 GTGGCTCTGCCACAATATCTGTTTCTG
* *
15494663 GTGGCTCTACCACAATATCTGTATCTG
1 GTGGCTCTGCCACAATATCTGTTTCTG
* *
15494690 GTGACTCTGTCACAATATCTGTT
1 GTGGCTCTGCCACAATATCTGTT
15494713 CTAGCAGCCA
Statistics
Matches: 42, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 42 1.00
ACGTcount: A:0.18, C:0.23, G:0.19, T:0.39
Consensus pattern (27 bp):
GTGGCTCTGCCACAATATCTGTTTCTG
Found at i:15494866 original size:25 final size:25
Alignment explanation
Indices: 15494834--15494925 Score: 121
Period size: 25 Copynumber: 3.7 Consensus size: 25
15494824 TTGCATTCAC
* *
15494834 ATTCTGATTCTGATTCGGTTACCTG
1 ATTCTGATTCTGATTCTGTCACCTG
** * *
15494859 ATAATGATTCTGCTTCTGTCACCTA
1 ATTCTGATTCTGATTCTGTCACCTG
*
15494884 ATTCTGATTCTGATTCTATCACCTG
1 ATTCTGATTCTGATTCTGTCACCTG
15494909 ATTCTGATTCTGATTCT
1 ATTCTGATTCTGATTCT
15494926 CATTTTGATT
Statistics
Matches: 56, Mismatches: 11, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
25 56 1.00
ACGTcount: A:0.20, C:0.22, G:0.14, T:0.45
Consensus pattern (25 bp):
ATTCTGATTCTGATTCTGTCACCTG
Found at i:15494893 original size:6 final size:6
Alignment explanation
Indices: 15494884--15494937 Score: 56
Period size: 6 Copynumber: 8.8 Consensus size: 6
15494874 CTGTCACCTA
* * *
15494884 ATTCTG ATTCTG ATTCT- ATCACCTG ATTCTG ATTCTG ATTCTC ATTTTG
1 ATTCTG ATTCTG ATTCTG AT--TCTG ATTCTG ATTCTG ATTCTG ATTCTG
15494933 ATTCT
1 ATTCT
15494938 AGTTTTGATA
Statistics
Matches: 39, Mismatches: 6, Indels: 6
0.76 0.12 0.12
Matches are distributed among these distances:
5 2 0.05
6 33 0.85
7 2 0.05
8 2 0.05
ACGTcount: A:0.19, C:0.20, G:0.11, T:0.50
Consensus pattern (6 bp):
ATTCTG
Found at i:15497140 original size:54 final size:54
Alignment explanation
Indices: 15497058--15497167 Score: 211
Period size: 54 Copynumber: 2.0 Consensus size: 54
15497048 AACTCAATCG
*
15497058 AACATTCATGCCATTTTCGCATGGCTTAAAGTTTACATACTAAAGTTCAAACAC
1 AACATTCATGCCATTTTCGCATGGCTTAAAGTTTACATACCAAAGTTCAAACAC
15497112 AACATTCATGCCATTTTCGCATGGCTTAAAGTTTACATACCAAAGTTCAAACAC
1 AACATTCATGCCATTTTCGCATGGCTTAAAGTTTACATACCAAAGTTCAAACAC
15497166 AA
1 AA
15497168 AATAATAGCC
Statistics
Matches: 55, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
54 55 1.00
ACGTcount: A:0.36, C:0.23, G:0.11, T:0.30
Consensus pattern (54 bp):
AACATTCATGCCATTTTCGCATGGCTTAAAGTTTACATACCAAAGTTCAAACAC
Found at i:15497886 original size:55 final size:55
Alignment explanation
Indices: 15497773--15497924 Score: 207
Period size: 55 Copynumber: 2.8 Consensus size: 55
15497763 ATATTAAGTC
* * * * *
15497773 CGCACACTCAGTGCTATATAATCAACCCACACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAATCAAACT
* *
15497828 CGCACACTTAGTGCTACATAGTCAAACTCGCACACTTAGTGCTACATAGTC-AATT
1 CGCACACTTAGTGCTACATAGTC-AACTCGCACACTTAGTGCTACATAATCAAACT
* *
15497883 CGCACACTTAGTGCTGCATAGTCAATTCGCACACTTAGTGCT
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCT
15497925 GCACAATTTA
Statistics
Matches: 87, Mismatches: 9, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
54 18 0.21
55 45 0.52
56 24 0.28
ACGTcount: A:0.31, C:0.29, G:0.14, T:0.26
Consensus pattern (55 bp):
CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAATCAAACT
Found at i:15497893 original size:27 final size:27
Alignment explanation
Indices: 15497773--15497924 Score: 205
Period size: 27 Copynumber: 5.6 Consensus size: 27
15497763 ATATTAAGTC
* * * *
15497773 CGCACACTCAGTGCTATATAATCAACC
1 CGCACACTTAGTGCTACATAGTCAACT
* *
15497800 CACACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAGTC-AACT
15497828 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTC-AACT
*
15497856 CGCACACTTAGTGCTACATAGTCAATT
1 CGCACACTTAGTGCTACATAGTCAACT
* *
15497883 CGCACACTTAGTGCTGCATAGTCAATT
1 CGCACACTTAGTGCTACATAGTCAACT
15497910 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
15497925 GCACAATTTA
Statistics
Matches: 116, Mismatches: 8, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
27 64 0.55
28 52 0.45
ACGTcount: A:0.31, C:0.29, G:0.14, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAACT
Found at i:15497945 original size:83 final size:83
Alignment explanation
Indices: 15497772--15497924 Score: 209
Period size: 83 Copynumber: 1.9 Consensus size: 83
15497762 TATATTAAGT
*
15497772 CCGCACACTCAGTGCTATATAATCAACCCACACACTTAGTGCTACATAATCAAACTCGCACACTT
1 CCGCACACTCAGTGCTACATAATCAACCCACACACTTAGTGCTACATAATCAAACTCGCACACTT
15497837 AGTGCTACATAGTCAAAC
66 AGTGCTACATAGTCAAAC
* * * ** * * * *
15497855 TCGCACACTTAGTGCTACATAGTCAATTCGCACACTTAGTGCTGCATAGTC-AATTCGCACACTT
1 CCGCACACTCAGTGCTACATAATCAACCCACACACTTAGTGCTACATAATCAAACTCGCACACTT
15497919 AGTGCT
66 AGTGCT
15497925 GCACAATTTA
Statistics
Matches: 60, Mismatches: 10, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
82 18 0.30
83 42 0.70
ACGTcount: A:0.31, C:0.29, G:0.14, T:0.26
Consensus pattern (83 bp):
CCGCACACTCAGTGCTACATAATCAACCCACACACTTAGTGCTACATAATCAAACTCGCACACTT
AGTGCTACATAGTCAAAC
Found at i:15499819 original size:27 final size:27
Alignment explanation
Indices: 15499782--15500271 Score: 597
Period size: 27 Copynumber: 18.1 Consensus size: 27
15499772 GTTTGAGCCA
* *
15499782 TACCGAAATACCCTTGTAGAGTAGAAA
1 TACCGAAATACCCTTGTAGGGTAGAAT
*
15499809 TACCGAAATA-CCTCTGTAGAGTAGAAT
1 TACCGAAATACCCT-TGTAGGGTAGAAT
* * *
15499836 TACTGAAATACCCTTGTAAGGTAGAAG
1 TACCGAAATACCCTTGTAGGGTAGAAT
* * *
15499863 TACTGAAATACCCCTGTAGGGTGGAAT
1 TACCGAAATACCCTTGTAGGGTAGAAT
** * *
15499890 TATTGAAATACCCCTATAGGGTAGAAT
1 TACCGAAATACCCTTGTAGGGTAGAAT
* *
15499917 TACTGAAATACCCTTGTAGCGTAGAAT
1 TACCGAAATACCCTTGTAGGGTAGAAT
* * * *
15499944 TATCGAAATACCCTTGAAGGATAGAAA
1 TACCGAAATACCCTTGTAGGGTAGAAT
15499971 TACCGAAATATCCC-TGTAGGGTAGAAT
1 TACCGAAATA-CCCTTGTAGGGTAGAAT
* *
15499998 TACTGAAATACCCCTGTAGGGTAGAAT
1 TACCGAAATACCCTTGTAGGGTAGAAT
* *
15500025 TACCGAAATACCCTTGTAGGGTAAAAA
1 TACCGAAATACCCTTGTAGGGTAGAAT
*
15500052 TACCGAAATACCCCTGTAGGGTAGAAT
1 TACCGAAATACCCTTGTAGGGTAGAAT
* *
15500079 TACTGAAATACCCCTGTAGGGTAGAAT
1 TACCGAAATACCCTTGTAGGGTAGAAT
* *
15500106 TACCGAAATACCCTTGTAGGGTAAAAA
1 TACCGAAATACCCTTGTAGGGTAGAAT
*
15500133 TACCGAAATACCCCTGTAGGGTAGAAT
1 TACCGAAATACCCTTGTAGGGTAGAAT
* * *
15500160 TACTGAAATACCCCTGTAGGGTAAAAT
1 TACCGAAATACCCTTGTAGGGTAGAAT
*
15500187 TACCGAAATACCCTTGTAGGGTAGAAA
1 TACCGAAATACCCTTGTAGGGTAGAAT
* * *
15500214 TAACAAAATACCCCTGTAGGGTAGAAT
1 TACCGAAATACCCTTGTAGGGTAGAAT
* * *
15500241 TACCTAAATACCCTTGTGGGGTAAAAT
1 TACCGAAATACCCTTGTAGGGTAGAAT
15500268 TACC
1 TACC
15500272 ATTTTGCCAT
Statistics
Matches: 402, Mismatches: 57, Indels: 8
0.86 0.12 0.02
Matches are distributed among these distances:
26 6 0.01
27 390 0.97
28 6 0.01
ACGTcount: A:0.36, C:0.19, G:0.20, T:0.25
Consensus pattern (27 bp):
TACCGAAATACCCTTGTAGGGTAGAAT
Found at i:15499921 original size:81 final size:81
Alignment explanation
Indices: 15499782--15500271 Score: 721
Period size: 81 Copynumber: 6.0 Consensus size: 81
15499772 GTTTGAGCCA
* * *
15499782 TACCGAAATACCCTTGTAGAGTAGAAATACCGAAATACCTCTGTAGAGTAGAATTACTGAAATAC
1 TACCGAAATACCCTTGTAGGGTAGAAATACCGAAATACCCCTGTAGGGTAGAATTACTGAAATAC
* * *
15499847 CCTTGTAAGGTAGAAG
66 CCCTGTAGGGTAGAAT
* * * * ** *
15499863 TACTGAAATACCCCTGTAGGGTGGAATTATTGAAATACCCCTATAGGGTAGAATTACTGAAATAC
1 TACCGAAATACCCTTGTAGGGTAGAAATACCGAAATACCCCTGTAGGGTAGAATTACTGAAATAC
* *
15499928 CCTTGTAGCGTAGAAT
66 CCCTGTAGGGTAGAAT
* * * *
15499944 TATCGAAATACCCTTGAAGGATAGAAATACCGAAATATCCCTGTAGGGTAGAATTACTGAAATAC
1 TACCGAAATACCCTTGTAGGGTAGAAATACCGAAATACCCCTGTAGGGTAGAATTACTGAAATAC
15500009 CCCTGTAGGGTAGAAT
66 CCCTGTAGGGTAGAAT
*
15500025 TACCGAAATACCCTTGTAGGGTAAAAATACCGAAATACCCCTGTAGGGTAGAATTACTGAAATAC
1 TACCGAAATACCCTTGTAGGGTAGAAATACCGAAATACCCCTGTAGGGTAGAATTACTGAAATAC
15500090 CCCTGTAGGGTAGAAT
66 CCCTGTAGGGTAGAAT
*
15500106 TACCGAAATACCCTTGTAGGGTAAAAATACCGAAATACCCCTGTAGGGTAGAATTACTGAAATAC
1 TACCGAAATACCCTTGTAGGGTAGAAATACCGAAATACCCCTGTAGGGTAGAATTACTGAAATAC
*
15500171 CCCTGTAGGGTAAAAT
66 CCCTGTAGGGTAGAAT
* *
15500187 TACCGAAATACCCTTGTAGGGTAGAAATAACAAAATACCCCTGTAGGGTAGAATTACCT-AAATA
1 TACCGAAATACCCTTGTAGGGTAGAAATACCGAAATACCCCTGTAGGGTAGAATTA-CTGAAATA
* * *
15500251 CCCTTGTGGGGTAAAAT
65 CCCCTGTAGGGTAGAAT
15500268 TACC
1 TACC
15500272 ATTTTGCCAT
Statistics
Matches: 371, Mismatches: 37, Indels: 2
0.90 0.09 0.00
Matches are distributed among these distances:
81 369 0.99
82 2 0.01
ACGTcount: A:0.36, C:0.19, G:0.20, T:0.25
Consensus pattern (81 bp):
TACCGAAATACCCTTGTAGGGTAGAAATACCGAAATACCCCTGTAGGGTAGAATTACTGAAATAC
CCCTGTAGGGTAGAAT
Found at i:15500700 original size:22 final size:22
Alignment explanation
Indices: 15500675--15500723 Score: 64
Period size: 22 Copynumber: 2.2 Consensus size: 22
15500665 ATGGTTTTGC
15500675 GCCAACCTACA-TATGGCTCTGT
1 GCCAACCTA-ATTATGGCTCTGT
* *
15500697 GCCAACCTAATTATGGTTGTGT
1 GCCAACCTAATTATGGCTCTGT
15500719 GCCAA
1 GCCAA
15500724 ACGTATTTGC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
21 1 0.04
22 23 0.96
ACGTcount: A:0.24, C:0.27, G:0.20, T:0.29
Consensus pattern (22 bp):
GCCAACCTAATTATGGCTCTGT
Found at i:15500896 original size:25 final size:27
Alignment explanation
Indices: 15500864--15500959 Score: 85
Period size: 27 Copynumber: 3.7 Consensus size: 27
15500854 GATGGCTTTG
*
15500864 TGCCACATAT-TCTGTT-AAGTGGCTT
1 TGCCACATATATCTGTTCAAGTGGCTC
*
15500889 TGCCACAT-TATCTGTTTCTAGTGGCTC
1 TGCCACATATATCTG-TTCAAGTGGCTC
** *
15500916 TGCCACA-ATATCTGTATCTGGTGACTC
1 TGCCACATATATCTGT-TCAAGTGGCTC
*
15500943 TGTCACA-ATATCTGTTC
1 TGCCACATATATCTGTTC
15500960 TGGCAGCCAT
Statistics
Matches: 61, Mismatches: 5, Indels: 9
0.81 0.07 0.12
Matches are distributed among these distances:
24 1 0.02
25 12 0.20
26 5 0.08
27 43 0.70
ACGTcount: A:0.20, C:0.24, G:0.18, T:0.39
Consensus pattern (27 bp):
TGCCACATATATCTGTTCAAGTGGCTC
Found at i:15500911 original size:27 final size:27
Alignment explanation
Indices: 15500881--15500958 Score: 102
Period size: 27 Copynumber: 2.9 Consensus size: 27
15500871 TATTCTGTTA
* *
15500881 AGTGGCTTTGCCACATTATCTGTTTCT
1 AGTGGCTCTGCCACAATATCTGTTTCT
*
15500908 AGTGGCTCTGCCACAATATCTGTATCT
1 AGTGGCTCTGCCACAATATCTGTTTCT
* * *
15500935 GGTGACTCTGTCACAATATCTGTT
1 AGTGGCTCTGCCACAATATCTGTT
15500959 CTGGCAGCCA
Statistics
Matches: 44, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 44 1.00
ACGTcount: A:0.19, C:0.23, G:0.19, T:0.38
Consensus pattern (27 bp):
AGTGGCTCTGCCACAATATCTGTTTCT
Found at i:15501088 original size:6 final size:6
Alignment explanation
Indices: 15501079--15501178 Score: 73
Period size: 6 Copynumber: 16.3 Consensus size: 6
15501069 TTACATTCAC
* * *
15501079 ATTCTG ATTCTG ATTCTG -TTACCTG ATACTG ATTCTG A-TCTTG -TCACCTA
1 ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTC-TG AT--TCTG
* *
15501129 ATTCTG ATTCTG ATTCTG ATTCTG ATTCTC ATTATG ATTCT- AGTTCTG
1 ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG A-TTCTG
15501177 AT
1 AT
15501179 AATGTTTCTT
Statistics
Matches: 74, Mismatches: 10, Indels: 20
0.71 0.10 0.19
Matches are distributed among these distances:
5 5 0.07
6 61 0.82
7 5 0.07
8 3 0.04
ACGTcount: A:0.20, C:0.19, G:0.14, T:0.47
Consensus pattern (6 bp):
ATTCTG
Found at i:15501114 original size:25 final size:25
Alignment explanation
Indices: 15501082--15501146 Score: 87
Period size: 25 Copynumber: 2.6 Consensus size: 25
15501072 CATTCACATT
* *
15501082 CTGATTCTGATTCTGTTACCTGATA
1 CTGATTCTGATTCTGTCACCTAATA
*
15501107 CTGATTCTGA-TCTTGTCACCTAATT
1 CTGATTCTGATTC-TGTCACCTAATA
15501132 CTGATTCTGATTCTG
1 CTGATTCTGATTCTG
15501147 ATTCTGATTC
Statistics
Matches: 35, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
24 2 0.06
25 31 0.89
26 2 0.06
ACGTcount: A:0.18, C:0.22, G:0.15, T:0.45
Consensus pattern (25 bp):
CTGATTCTGATTCTGTCACCTAATA
Found at i:15501115 original size:31 final size:31
Alignment explanation
Indices: 15501079--15501152 Score: 79
Period size: 25 Copynumber: 2.6 Consensus size: 31
15501069 TTACATTCAC
* *
15501079 ATTCTGATTCTGATTCTGTTACCTGATACTG
1 ATTCTGATTCTGATTCTGTCACCTAATACTG
*
15501110 ATTCTGA-TC----T-TGTCACCTAATTCTG
1 ATTCTGATTCTGATTCTGTCACCTAATACTG
15501135 ATTCTGATTCTGATTCTG
1 ATTCTGATTCTGATTCTG
15501153 ATTCTCATTA
Statistics
Matches: 34, Mismatches: 3, Indels: 12
0.69 0.06 0.24
Matches are distributed among these distances:
25 19 0.56
26 3 0.09
30 3 0.09
31 9 0.26
ACGTcount: A:0.19, C:0.20, G:0.15, T:0.46
Consensus pattern (31 bp):
ATTCTGATTCTGATTCTGTCACCTAATACTG
Found at i:15504548 original size:18 final size:18
Alignment explanation
Indices: 15504525--15504565 Score: 55
Period size: 18 Copynumber: 2.3 Consensus size: 18
15504515 ATCCTTATTT
15504525 TTTCTTCTCCTTTCTTTC
1 TTTCTTCTCCTTTCTTTC
* * *
15504543 TTTCTTCTCTTTTGTTTT
1 TTTCTTCTCCTTTCTTTC
15504561 TTTCT
1 TTTCT
15504566 AAACCCTTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.00, C:0.24, G:0.02, T:0.73
Consensus pattern (18 bp):
TTTCTTCTCCTTTCTTTC
Found at i:15507285 original size:39 final size:39
Alignment explanation
Indices: 15507218--15507474 Score: 390
Period size: 39 Copynumber: 6.5 Consensus size: 39
15507208 ACAAAGCATG
* * *
15507218 CGGGACTTTAAGCCCGGATATAATACCAGCAC-AAAGCCTG
1 CGGGAC-TT-AGCCCGGATATAACACCAGCACGAATGCCTT
15507258 CGGGACTTTAGCCCGGATATAACACCAGCACGAATGCCTT
1 CGGGAC-TTAGCCCGGATATAACACCAGCACGAATGCCTT
*
15507298 CGGGACTTAGCCCGAATATAACACCAGCACGAATGCCTT
1 CGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
* *
15507337 CGGGACTTAGCCTGGATATAATACCAGCACGAATGCCTT
1 CGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
* *
15507376 CGGGACTTAGCCCGGATATAACACTAGCACGAATACCTT
1 CGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
15507415 CGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
1 CGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
* *
15507454 CGAGACTTAACCCGGATATAA
1 CGGGACTTAGCCCGGATATAA
15507475 TTCTCCATTA
Statistics
Matches: 201, Mismatches: 15, Indels: 3
0.92 0.07 0.01
Matches are distributed among these distances:
39 180 0.90
40 21 0.10
ACGTcount: A:0.30, C:0.28, G:0.22, T:0.19
Consensus pattern (39 bp):
CGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
Found at i:15510538 original size:51 final size:50
Alignment explanation
Indices: 15510477--15510605 Score: 146
Period size: 45 Copynumber: 2.7 Consensus size: 50
15510467 ATTGCTCATG
15510477 TTGTAAAATTATATATTGTAAGTTTAGTGAAATTACTTTTGAATGT-TGCAAA
1 TTGTAAAATTATATATTGTAAGTTTAGTGAAATT--TTTTGAAT-TATGCAAA
* ** *
15510529 -TGTAAAATTATATTTTGTAA-AATA-T--AA-TTTTTGAATTATGTAAA
1 TTGTAAAATTATATATTGTAAGTTTAGTGAAATTTTTTGAATTATGCAAA
15510573 TTGTAAAATTATATATTGTAAGTTTAGTGAAAT
1 TTGTAAAATTATATATTGTAAGTTTAGTGAAAT
15510606 AATTTTCATG
Statistics
Matches: 63, Mismatches: 7, Indels: 16
0.73 0.08 0.19
Matches are distributed among these distances:
43 1 0.02
44 13 0.21
45 19 0.30
46 3 0.05
47 3 0.05
49 3 0.05
50 2 0.03
51 19 0.30
ACGTcount: A:0.40, C:0.02, G:0.13, T:0.46
Consensus pattern (50 bp):
TTGTAAAATTATATATTGTAAGTTTAGTGAAATTTTTTGAATTATGCAAA
Found at i:15510592 original size:15 final size:15
Alignment explanation
Indices: 15510529--15510593 Score: 53
Period size: 15 Copynumber: 4.3 Consensus size: 15
15510519 ATGTTGCAAA
*
15510529 TGTAAAATTATATTT
1 TGTAAAATTATATAT
15510544 TGTAAAA-TATA-AT
1 TGTAAAATTATATAT
* ** *
15510557 TTTTGAATTATGTAAAT
1 TGTAAAATTA--TATAT
15510574 TGTAAAATTATATAT
1 TGTAAAATTATATAT
15510589 TGTAA
1 TGTAA
15510594 GTTTAGTGAA
Statistics
Matches: 38, Mismatches: 8, Indels: 8
0.70 0.15 0.15
Matches are distributed among these distances:
13 5 0.13
14 6 0.16
15 16 0.42
16 2 0.05
17 9 0.24
ACGTcount: A:0.43, C:0.00, G:0.09, T:0.48
Consensus pattern (15 bp):
TGTAAAATTATATAT
Found at i:15513349 original size:27 final size:28
Alignment explanation
Indices: 15513295--15513349 Score: 69
Period size: 28 Copynumber: 2.0 Consensus size: 28
15513285 AAACTCTTCT
* *
15513295 AAAGGAAACTCAATAGAAATTCTTTAAA
1 AAAGAAAACTCAATAGAAATTCTATAAA
15513323 AAAGAAAACTCAA-AGAGAATT-TATAAA
1 AAAGAAAACTCAATAGA-AATTCTATAAA
15513350 CTCAAAAGAG
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
27 8 0.33
28 16 0.67
ACGTcount: A:0.58, C:0.09, G:0.11, T:0.22
Consensus pattern (28 bp):
AAAGAAAACTCAATAGAAATTCTATAAA
Found at i:15516877 original size:19 final size:18
Alignment explanation
Indices: 15516850--15516887 Score: 58
Period size: 19 Copynumber: 2.1 Consensus size: 18
15516840 AGTGTAGACT
15516850 TGGCAACTTTGTAATTCAA
1 TGGCAACTTTGTAA-TCAA
*
15516869 TGGCGACTTTGTAATCAA
1 TGGCAACTTTGTAATCAA
15516887 T
1 T
15516888 CGACACATTC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 5 0.28
19 13 0.72
ACGTcount: A:0.29, C:0.16, G:0.18, T:0.37
Consensus pattern (18 bp):
TGGCAACTTTGTAATCAA
Found at i:15522768 original size:39 final size:39
Alignment explanation
Indices: 15522714--15522841 Score: 220
Period size: 39 Copynumber: 3.3 Consensus size: 39
15522704 ATGATATTTA
*
15522714 GAAACATATCCGGACTTGAGGTCCGCAGGCTATGTGCTG
1 GAAACATATCCGGACTTGAGGTCCGCAGGCTACGTGCTG
15522753 GAAACATATCCGGACTTGAGGTCCGCAGGCTACGTGCTG
1 GAAACATATCCGGACTTGAGGTCCGCAGGCTACGTGCTG
* *
15522792 GAAATATATCCGGACTTGAGGTCCGCAGGCTACGTGCTA
1 GAAACATATCCGGACTTGAGGTCCGCAGGCTACGTGCTG
*
15522831 GAAATATATCC
1 GAAACATATCC
15522842 AGGCCTAAAG
Statistics
Matches: 86, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
39 86 1.00
ACGTcount: A:0.26, C:0.23, G:0.28, T:0.23
Consensus pattern (39 bp):
GAAACATATCCGGACTTGAGGTCCGCAGGCTACGTGCTG
Found at i:15530717 original size:39 final size:39
Alignment explanation
Indices: 15530663--15530792 Score: 215
Period size: 39 Copynumber: 3.3 Consensus size: 39
15530653 ATGATATTTA
15530663 GAAACATATCCGGACTTGAGGTCCGCAGGCTACGTGCTG
1 GAAACATATCCGGACTTGAGGTCCGCAGGCTACGTGCTG
* *
15530702 GAAACATATCTGGACTTGATGTCCGCAGGCTACGTGCTG
1 GAAACATATCCGGACTTGAGGTCCGCAGGCTACGTGCTG
* *
15530741 GAAATATATCCGGACTTGAGGTCCGCAAGCTACGTGCTG
1 GAAACATATCCGGACTTGAGGTCCGCAGGCTACGTGCTG
*
15530780 GAAATATATCCGG
1 GAAACATATCCGG
15530793 GCCTAAAGAC
Statistics
Matches: 85, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
39 85 1.00
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.23
Consensus pattern (39 bp):
GAAACATATCCGGACTTGAGGTCCGCAGGCTACGTGCTG
Found at i:15533911 original size:46 final size:46
Alignment explanation
Indices: 15533861--15534036 Score: 225
Period size: 46 Copynumber: 3.8 Consensus size: 46
15533851 TGGTTGAGCA
15533861 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
15533907 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
15533952 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
15534000 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
15534037 GCGGGTTACA
Statistics
Matches: 112, Mismatches: 9, Indels: 18
0.81 0.06 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.04
45 3 0.03
46 64 0.57
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:15534017 original size:93 final size:93
Alignment explanation
Indices: 15533858--15534028 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
15533848 GGATGGTTGA
* *
15533858 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
15533923 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
15533951 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
15534016 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
15534029 ACTTATGGGC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.21, C:0.22, G:0.29, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:15547769 original size:46 final size:46
Alignment explanation
Indices: 15547717--15547818 Score: 132
Period size: 46 Copynumber: 2.2 Consensus size: 46
15547707 CTTCGACATG
** * *
15547717 GACTTACATGAATTATTCCTATCTCCAATGTCATATATCTGATATC
1 GACTTACATGAACCATTCCTATCTCCAAAGCCATATATCTGATATC
** * *
15547763 GACTTACATGGCCCATTCCTGTCTCCAAAGCCATATATCTGATATG
1 GACTTACATGAACCATTCCTATCTCCAAAGCCATATATCTGATATC
15547809 GACTTACATG
1 GACTTACATG
15547819 GCTCATTTCT
Statistics
Matches: 48, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
46 48 1.00
ACGTcount: A:0.28, C:0.25, G:0.13, T:0.34
Consensus pattern (46 bp):
GACTTACATGAACCATTCCTATCTCCAAAGCCATATATCTGATATC
Found at i:15547819 original size:46 final size:46
Alignment explanation
Indices: 15547731--15547831 Score: 148
Period size: 46 Copynumber: 2.2 Consensus size: 46
15547721 TACATGAATT
* * *
15547731 ATTCCTATCTCCAATGTCATATATCTGATATCGACTTACATGGCCC
1 ATTCCTGTCTCCAAAGCCATATATCTGATATCGACTTACATGGCCC
* *
15547777 ATTCCTGTCTCCAAAGCCATATATCTGATATGGACTTACATGGCTC
1 ATTCCTGTCTCCAAAGCCATATATCTGATATCGACTTACATGGCCC
*
15547823 ATTTCTGTC
1 ATTCCTGTC
15547832 CTGTCCTGTC
Statistics
Matches: 49, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
46 49 1.00
ACGTcount: A:0.25, C:0.27, G:0.13, T:0.36
Consensus pattern (46 bp):
ATTCCTGTCTCCAAAGCCATATATCTGATATCGACTTACATGGCCC
Found at i:15552827 original size:34 final size:33
Alignment explanation
Indices: 15552770--15552867 Score: 115
Period size: 33 Copynumber: 2.9 Consensus size: 33
15552760 TAGACTCACT
* * * *
15552770 CGTGTTTACTGTCCCGACGGACTTATCTTTATTT
1 CGTGTTTACTGTCTCGACAGACTTA-CTCTATTC
* * *
15552804 TGTGTTTACTATCTCGACAGACTTACTCTGTTC
1 CGTGTTTACTGTCTCGACAGACTTACTCTATTC
*
15552837 CATGTTTACTGTCTCGACAGACTTACTCTAT
1 CGTGTTTACTGTCTCGACAGACTTACTCTAT
15552868 GGATGCCATG
Statistics
Matches: 53, Mismatches: 11, Indels: 1
0.82 0.17 0.02
Matches are distributed among these distances:
33 32 0.60
34 21 0.40
ACGTcount: A:0.18, C:0.24, G:0.15, T:0.42
Consensus pattern (33 bp):
CGTGTTTACTGTCTCGACAGACTTACTCTATTC
Found at i:15554109 original size:37 final size:37
Alignment explanation
Indices: 15554058--15554156 Score: 110
Period size: 37 Copynumber: 2.7 Consensus size: 37
15554048 ATATCAAACC
* * *
15554058 AATCTTACTGTTATACTGAATGAAGCTCAATCGAGGA
1 AATCATACTGTTATACTGAATGAAGCTCAACCGAGAA
* **
15554095 AATCATA-TCGTTATACTGAAAGAATTTCAACCGAGAA
1 AATCATACT-GTTATACTGAATGAAGCTCAACCGAGAA
* *
15554132 AATCTTACTATTATACTGAATGAAG
1 AATCATACTGTTATACTGAATGAAG
15554157 ATAAACTGAG
Statistics
Matches: 50, Mismatches: 10, Indels: 4
0.78 0.16 0.06
Matches are distributed among these distances:
36 1 0.02
37 48 0.96
38 1 0.02
ACGTcount: A:0.39, C:0.15, G:0.15, T:0.30
Consensus pattern (37 bp):
AATCATACTGTTATACTGAATGAAGCTCAACCGAGAA
Found at i:15554204 original size:37 final size:37
Alignment explanation
Indices: 15554135--15554224 Score: 110
Period size: 37 Copynumber: 2.4 Consensus size: 37
15554125 CCGAGAAAAT
15554135 CTTACTATTATACTGAATGAAGATAAACTGAGCAAAG
1 CTTACTATTATACTGAATGAAGATAAACTGAGCAAAG
* * * * *
15554172 GTTACTATTATACTGAATGATG-TCCAATTGAGCAAAT
1 CTTACTATTATACTGAATGAAGAT-AAACTGAGCAAAG
*
15554209 CCTACTATTATACTGA
1 CTTACTATTATACTGA
15554225 GTGTAACTTG
Statistics
Matches: 45, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
36 1 0.02
37 44 0.98
ACGTcount: A:0.38, C:0.16, G:0.14, T:0.32
Consensus pattern (37 bp):
CTTACTATTATACTGAATGAAGATAAACTGAGCAAAG
Found at i:15556521 original size:27 final size:27
Alignment explanation
Indices: 15556504--15556710 Score: 207
Period size: 27 Copynumber: 7.6 Consensus size: 27
15556494 ATATTAAGTC
15556504 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTCAGTGCTATATAATCAACT
* *
15556531 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTCAGTGCTATATAATC-AACT
* * *
15556559 CGCACACTTAGTGCTACATAGTCAACT
1 CGCACACTCAGTGCTATATAATCAACT
* * *
15556586 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTCAGTGCTATATAATC-AACT
* * * *
15556614 CGCACACTTAGTGCTACATAGTCAATT
1 CGCACACTCAGTGCTATATAATCAACT
* * *
15556641 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTCAGTGCTATATAATC-AACT
* * * *
15556669 CGCACACTTAGTGCTACATAGTCAATT
1 CGCACACTCAGTGCTATATAATCAACT
*
15556696 CGCACACTTAGTGCT
1 CGCACACTCAGTGCT
15556711 GCACAATTTA
Statistics
Matches: 171, Mismatches: 6, Indels: 6
0.93 0.03 0.03
Matches are distributed among these distances:
27 92 0.54
28 79 0.46
ACGTcount: A:0.31, C:0.29, G:0.14, T:0.27
Consensus pattern (27 bp):
CGCACACTCAGTGCTATATAATCAACT
Found at i:15556588 original size:55 final size:55
Alignment explanation
Indices: 15556504--15556710 Score: 360
Period size: 55 Copynumber: 3.8 Consensus size: 55
15556494 ATATTAAGTC
* * * *
15556504 CGCACACTCAGTGCTATATAATCAACTCGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAGTCAAACT
15556559 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAGTCAAACT
*
15556614 CGCACACTTAGTGCTACATAGTCAATTCGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAGTCAAACT
*
15556669 CGCACACTTAGTGCTACATAGTCAATTCGCACACTTAGTGCT
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCT
15556711 GCACAATTTA
Statistics
Matches: 147, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
55 147 1.00
ACGTcount: A:0.31, C:0.29, G:0.14, T:0.27
Consensus pattern (55 bp):
CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAGTCAAACT
Found at i:15559020 original size:12 final size:12
Alignment explanation
Indices: 15559005--15559039 Score: 70
Period size: 12 Copynumber: 2.9 Consensus size: 12
15558995 CTCATCCTGC
15559005 ACCACCTACTGT
1 ACCACCTACTGT
15559017 ACCACCTACTGT
1 ACCACCTACTGT
15559029 ACCACCTACTG
1 ACCACCTACTG
15559040 CTCCTTCTGT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.26, C:0.43, G:0.09, T:0.23
Consensus pattern (12 bp):
ACCACCTACTGT
Found at i:15566253 original size:95 final size:95
Alignment explanation
Indices: 15566090--15566279 Score: 353
Period size: 95 Copynumber: 2.0 Consensus size: 95
15566080 GAATCCATTC
*
15566090 AGACACTATCTCACAAGAATTTAAATAACACATAATATGGAATTCTTTTGCTTCCCCTGTTTATT
1 AGACACTATCTCACAAGAATTCAAATAACACATAATATGGAATTCTTTTGCTTCCCCTGTTTATT
15566155 TTATGTGAAAATAGACTCAATAAAATTTAA
66 TTATGTGAAAATAGACTCAATAAAATTTAA
* *
15566185 AGACACTGTCTCACAAGAATTCAAATATCACATAATATGGAATTCTTTTGCTTCCCCTGTTTATT
1 AGACACTATCTCACAAGAATTCAAATAACACATAATATGGAATTCTTTTGCTTCCCCTGTTTATT
15566250 TTATGTGAAAATAGACTCAATAAAATTTAA
66 TTATGTGAAAATAGACTCAATAAAATTTAA
15566280 TTATATATTT
Statistics
Matches: 92, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
95 92 1.00
ACGTcount: A:0.38, C:0.16, G:0.10, T:0.36
Consensus pattern (95 bp):
AGACACTATCTCACAAGAATTCAAATAACACATAATATGGAATTCTTTTGCTTCCCCTGTTTATT
TTATGTGAAAATAGACTCAATAAAATTTAA
Found at i:15566734 original size:50 final size:49
Alignment explanation
Indices: 15566616--15566894 Score: 279
Period size: 50 Copynumber: 5.6 Consensus size: 49
15566606 CTGGTACGCA
* * **
15566616 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCAACCATCCGGTACACG
* *
15566665 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATCTGATACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACC-AACCATCCGGTACACG
* * * ** ** * *
15566715 TAGTAGCCTACACTTAGTACTGCACACGTGATCAAAGTTATAAGGTACGCA
1 TAGTAGCCTGCACTTAGTACTACACACGTGA-CCAA-CCATCCGGTACACG
* * *
15566766 TAGTAGCCTGCACTTAGTACTACACATGCGACCAACAATCCGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCAACCATCCGGTACACG
* * * * ** * *
15566815 TAGTAGCTTGAACTTAGTACTACACACATGACCTCACCATTTGATACACA
1 TAGTAGCCTGCACTTAGTACTACACACGTGACC-AACCATCCGGTACACG
*
15566865 TAGTAGCCTGCACTTTGTACTACACACGTG
1 TAGTAGCCTGCACTTAGTACTACACACGTG
15566895 TACTCCCAAT
Statistics
Matches: 184, Mismatches: 42, Indels: 7
0.79 0.18 0.03
Matches are distributed among these distances:
49 67 0.36
50 82 0.45
51 35 0.19
ACGTcount: A:0.30, C:0.27, G:0.17, T:0.25
Consensus pattern (49 bp):
TAGTAGCCTGCACTTAGTACTACACACGTGACCAACCATCCGGTACACG
Found at i:15566879 original size:150 final size:150
Alignment explanation
Indices: 15566608--15566894 Score: 475
Period size: 150 Copynumber: 1.9 Consensus size: 150
15566598 GAAGCTATCT
**
15566608 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACACGTAGTAGCC
1 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAACAATCCGGTACACGTAGTAGCC
* * * *
15566673 TGCACTTAGTACTACACACGTGACCTAACCATCTGATACACGTAGTAGCCTACACTTAGTACTGC
66 TGAACTTAGTACTACACACATGACCTAACCATCTGATACACATAGTAGCCTACACTTAGTACTAC
15566738 ACACGTGATCAAAGTTATAA
131 ACACGTGATCAAAGTTATAA
*
15566758 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAACAATCCGGTACACGTAGTAGCT
1 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAACAATCCGGTACACGTAGTAGCC
* * * *
15566823 TGAACTTAGTACTACACACATGACCTCACCATTTGATACACATAGTAGCCTGCACTTTGTACTAC
66 TGAACTTAGTACTACACACATGACCTAACCATCTGATACACATAGTAGCCTACACTTAGTACTAC
15566888 ACACGTG
131 ACACGTG
15566895 TACTCCCAAT
Statistics
Matches: 126, Mismatches: 11, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
150 126 1.00
ACGTcount: A:0.30, C:0.27, G:0.18, T:0.25
Consensus pattern (150 bp):
GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAACAATCCGGTACACGTAGTAGCC
TGAACTTAGTACTACACACATGACCTAACCATCTGATACACATAGTAGCCTACACTTAGTACTAC
ACACGTGATCAAAGTTATAA
Found at i:15569831 original size:15 final size:15
Alignment explanation
Indices: 15569809--15569842 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
15569799 ACTAAAAACA
15569809 AATA-CAACCGGAAC
1 AATATCAACCGGAAC
15569823 AATATCAACCGGAAC
1 AATATCAACCGGAAC
*
15569838 TATAT
1 AATAT
15569843 GCTTCTCGTA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 4 0.22
15 14 0.78
ACGTcount: A:0.47, C:0.24, G:0.12, T:0.18
Consensus pattern (15 bp):
AATATCAACCGGAAC
Found at i:15572572 original size:22 final size:22
Alignment explanation
Indices: 15572495--15572572 Score: 59
Period size: 22 Copynumber: 3.3 Consensus size: 22
15572485 TTAGTACTAC
*
15572495 ACACATGACCTCACCATCTGAT
1 ACACGTGACCTCACCATCTGAT
* *
15572517 ACACGTAGTAGCCTGCACTTAGTACT-AC
1 ACACGT-G-A-CCT-CAC-CA-T-CTGAT
15572545 ACACGTGACCTCACCATCTGAT
1 ACACGTGACCTCACCATCTGAT
15572567 ACACGT
1 ACACGT
15572573 AGTAGCCTGC
Statistics
Matches: 43, Mismatches: 5, Indels: 16
0.67 0.08 0.25
Matches are distributed among these distances:
21 2 0.05
22 13 0.30
23 2 0.05
24 4 0.09
25 6 0.14
26 4 0.09
27 2 0.05
28 8 0.19
29 2 0.05
ACGTcount: A:0.29, C:0.33, G:0.14, T:0.23
Consensus pattern (22 bp):
ACACGTGACCTCACCATCTGAT
Found at i:15572608 original size:50 final size:50
Alignment explanation
Indices: 15572466--15572601 Score: 263
Period size: 50 Copynumber: 2.7 Consensus size: 50
15572456 GCACATCCTG
15572466 TACACGTAGTAGCCTGCACTTAGTACTACACACATGACCTCACCATCTGA
1 TACACGTAGTAGCCTGCACTTAGTACTACACACATGACCTCACCATCTGA
*
15572516 TACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTCACCATCTGA
1 TACACGTAGTAGCCTGCACTTAGTACTACACACATGACCTCACCATCTGA
15572566 TACACGTAGTAGCCTGCACTTAGTACTACACACATG
1 TACACGTAGTAGCCTGCACTTAGTACTACACACATG
15572602 TACTCACAAT
Statistics
Matches: 84, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
50 84 1.00
ACGTcount: A:0.29, C:0.31, G:0.15, T:0.24
Consensus pattern (50 bp):
TACACGTAGTAGCCTGCACTTAGTACTACACACATGACCTCACCATCTGA
Found at i:15573061 original size:26 final size:26
Alignment explanation
Indices: 15573032--15573113 Score: 146
Period size: 26 Copynumber: 3.2 Consensus size: 26
15573022 TGGTACAAAT
*
15573032 TGATAATGGGTTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
15573058 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
15573084 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
15573110 TGAT
1 TGAT
15573114 GGGAATTTCA
Statistics
Matches: 54, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 54 1.00
ACGTcount: A:0.32, C:0.07, G:0.24, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:15574782 original size:28 final size:26
Alignment explanation
Indices: 15574736--15574810 Score: 87
Period size: 26 Copynumber: 2.8 Consensus size: 26
15574726 AAAAGTAGCT
* * *
15574736 AAATTACTATAATACCCCTATGTATGGA
1 AAATTACTGTTATACCCCTA-G-ATGCA
*
15574764 AAATTACTGTTATAACCCTAGATGCA
1 AAATTACTGTTATACCCCTAGATGCA
*
15574790 AAATTACCGTTATACCCCTAG
1 AAATTACTGTTATACCCCTAG
15574811 GTTTAATTTT
Statistics
Matches: 41, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
26 23 0.56
27 1 0.02
28 17 0.41
ACGTcount: A:0.37, C:0.21, G:0.11, T:0.31
Consensus pattern (26 bp):
AAATTACTGTTATACCCCTAGATGCA
Found at i:15574998 original size:32 final size:27
Alignment explanation
Indices: 15574914--15574991 Score: 122
Period size: 27 Copynumber: 2.9 Consensus size: 27
15574904 GAGGAAGCGT
* *
15574914 TCTGGTGGCTATGCCACAAATATCTGA
1 TCTGGTGGCTCTGCCACATATATCTGA
*
15574941 TCTGGTGGCTCTGCCACATATATCTGT
1 TCTGGTGGCTCTGCCACATATATCTGA
15574968 TCTGGTGGCTCTGCCACA-ATATCT
1 TCTGGTGGCTCTGCCACATATATCT
15574992 ATATCTGATG
Statistics
Matches: 48, Mismatches: 3, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
26 6 0.12
27 42 0.88
ACGTcount: A:0.19, C:0.26, G:0.22, T:0.33
Consensus pattern (27 bp):
TCTGGTGGCTCTGCCACATATATCTGA
Found at i:15576246 original size:30 final size:30
Alignment explanation
Indices: 15576212--15576271 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
15576202 CTTTAATACG
15576212 AACTTTGGCAAAATTAC-CATTTTGCCCCTA
1 AACTTTGGCAAAATTACAC-TTTTGCCCCTA
* *
15576242 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGCAAAATTACACTTTTGCCCCTA
15576272 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
30 26 0.96
31 1 0.04
ACGTcount: A:0.28, C:0.27, G:0.08, T:0.37
Consensus pattern (30 bp):
AACTTTGGCAAAATTACACTTTTGCCCCTA
Found at i:15581248 original size:28 final size:28
Alignment explanation
Indices: 15581206--15581320 Score: 115
Period size: 29 Copynumber: 4.0 Consensus size: 28
15581196 TACCTTTATC
* * *
15581206 TGGCCCATAAAGCCCAATCATATTCATA
1 TGGCCCATTAGGCCCAATCACATTCATA
* *
15581234 TGGCCCACTAGGCCCAAATCACCTGT-ATA
1 TGGCCCATTAGGCCC-AATCACAT-TCATA
* *
15581263 TGGCCCATTAGGCCTAAATCACATTTATA
1 TGGCCCATTAGGCC-CAATCACATTCATA
* *
15581292 TGGCCCGTTAGGCCCAGTCACATTCATA
1 TGGCCCATTAGGCCCAATCACATTCATA
15581320 T
1 T
15581321 TCATGCTCAC
Statistics
Matches: 71, Mismatches: 12, Indels: 8
0.78 0.13 0.09
Matches are distributed among these distances:
28 25 0.35
29 45 0.63
30 1 0.01
ACGTcount: A:0.29, C:0.30, G:0.16, T:0.26
Consensus pattern (28 bp):
TGGCCCATTAGGCCCAATCACATTCATA
Found at i:15581556 original size:16 final size:16
Alignment explanation
Indices: 15581535--15581581 Score: 58
Period size: 16 Copynumber: 2.9 Consensus size: 16
15581525 CAAACTTTTG
15581535 GCTTTTCGGCATTTCA
1 GCTTTTCGGCATTTCA
* * *
15581551 GCTTTTCGACTTTTCG
1 GCTTTTCGGCATTTCA
*
15581567 GCTTTTCAGCATTTC
1 GCTTTTCGGCATTTC
15581582 GGTTTTTGCT
Statistics
Matches: 25, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
16 25 1.00
ACGTcount: A:0.11, C:0.26, G:0.17, T:0.47
Consensus pattern (16 bp):
GCTTTTCGGCATTTCA
Found at i:15581582 original size:16 final size:15
Alignment explanation
Indices: 15581534--15581587 Score: 56
Period size: 16 Copynumber: 3.5 Consensus size: 15
15581524 CCAAACTTTT
15581534 GGCTTTTCGGCATTTC
1 GGCTTTTC-GCATTTC
* *
15581550 AGCTTTTCGACTTTTC
1 GGCTTTTCG-CATTTC
15581566 GGCTTTTCAGCATTTC
1 GGCTTTTC-GCATTTC
15581582 GG-TTTT
1 GGCTTTT
15581588 TGCTGATACA
Statistics
Matches: 32, Mismatches: 4, Indels: 5
0.78 0.10 0.12
Matches are distributed among these distances:
15 5 0.16
16 26 0.81
17 1 0.03
ACGTcount: A:0.09, C:0.22, G:0.20, T:0.48
Consensus pattern (15 bp):
GGCTTTTCGCATTTC
Found at i:15581588 original size:24 final size:24
Alignment explanation
Indices: 15581536--15581582 Score: 76
Period size: 24 Copynumber: 2.0 Consensus size: 24
15581526 AAACTTTTGG
*
15581536 CTTTTCGGCATTTCAGCTTTTCGA
1 CTTTTCGGCATTTCAGCATTTCGA
*
15581560 CTTTTCGGCTTTTCAGCATTTCG
1 CTTTTCGGCATTTCAGCATTTCG
15581583 GTTTTTGCTG
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.11, C:0.26, G:0.17, T:0.47
Consensus pattern (24 bp):
CTTTTCGGCATTTCAGCATTTCGA
Found at i:15584671 original size:22 final size:20
Alignment explanation
Indices: 15584623--15584671 Score: 53
Period size: 22 Copynumber: 2.2 Consensus size: 20
15584613 TCTTAACTAC
15584623 TCAAATCCATAGCCAAAACA
1 TCAAATCCATAGCCAAAACA
*
15584643 TACCAAATCTATATGCCAAAATCA
1 T--CAAATCCATA-GCCAAAA-CA
15584667 TCAAA
1 TCAAA
15584672 CTTACATAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 6
0.77 0.03 0.19
Matches are distributed among these distances:
20 1 0.04
22 13 0.54
23 7 0.29
24 3 0.12
ACGTcount: A:0.49, C:0.27, G:0.04, T:0.20
Consensus pattern (20 bp):
TCAAATCCATAGCCAAAACA
Found at i:15592857 original size:44 final size:44
Alignment explanation
Indices: 15592767--15592973 Score: 141
Period size: 44 Copynumber: 4.6 Consensus size: 44
15592757 GTTACCATAG
* * *
15592767 CAAATCTTATCTCCCTAAAGTTGCAGTGGAGTAAGATGGAGCTA
1 CAAATCCTATATCCCTAAAGTTGCAGTGGAGTAAGATGAAGCTA
* *
15592811 CAAATCCTATATCCCTAAGGTTGCAGTGGA-TCAGATTGAAAG-TA
1 CAAATCCTATATCCCTAAAGTTGCAGTGGAGTAAGA-TG-AAGCTA
* * * * * * * *
15592855 CAATTCCTATACCCCTGAAGTTACAATGG-GTCAGGTCGAATCTA
1 CAAATCCTATATCCCTAAAGTTGCAGTGGAGTAAGAT-GAAGCTA
* * * * *
15592899 CCATAGCGAATCTTATCTCTCTGAAGTTGTAGTGGAGTAAGATGAAGCTA
1 -C--A---AATCCTATATCCCTAAAGTTGCAGTGGAGTAAGATGAAGCTA
*
15592949 CAGATCCTATATCCCTAAAGTTGCA
1 CAAATCCTATATCCCTAAAGTTGCA
15592974 ATAGATCGGA
Statistics
Matches: 121, Mismatches: 30, Indels: 24
0.69 0.17 0.14
Matches are distributed among these distances:
43 7 0.06
44 78 0.64
45 3 0.02
47 2 0.02
49 1 0.01
50 25 0.21
51 5 0.04
ACGTcount: A:0.31, C:0.20, G:0.20, T:0.28
Consensus pattern (44 bp):
CAAATCCTATATCCCTAAAGTTGCAGTGGAGTAAGATGAAGCTA
Found at i:15593007 original size:138 final size:138
Alignment explanation
Indices: 15592759--15593008 Score: 394
Period size: 138 Copynumber: 1.8 Consensus size: 138
15592749 AAGTTGAAGT
*
15592759 TACCATAGCAAATCTTATCTCCCTAAAGTTGCAGTGGAGTAAGATGGAGCTACAAATCCTATATC
1 TACCATAGCAAATCTTATCTCCCTAAAGTTGCAGTGGAGTAAGATGAAGCTACAAATCCTATATC
* * *
15592824 CCTAAGGTTGCAGTGGATCAGATTGAAAGTACAATTCCTATACCCCTGAAGTTACAATGGGTCAG
66 CCTAAAGTTGCAATAGATCAGATTGAAAGTACAATTCCTATACCCCTGAAGTTACAATGGGTCAG
15592889 GTCGAATC
131 GTCGAATC
* * * * *
15592897 TACCATAGCGAATCTTATCTCTCTGAAGTTGTAGTGGAGTAAGATGAAGCTACAGATCCTATATC
1 TACCATAGCAAATCTTATCTCCCTAAAGTTGCAGTGGAGTAAGATGAAGCTACAAATCCTATATC
*
15592962 CCTAAAGTTGCAATAGATCGGATT-AAAGTTACAATTCCTATACCCCT
66 CCTAAAGTTGCAATAGATCAGATTGAAAG-TACAATTCCTATACCCCT
15593009 AAATTTGCAG
Statistics
Matches: 101, Mismatches: 10, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
137 4 0.04
138 97 0.96
ACGTcount: A:0.32, C:0.21, G:0.19, T:0.28
Consensus pattern (138 bp):
TACCATAGCAAATCTTATCTCCCTAAAGTTGCAGTGGAGTAAGATGAAGCTACAAATCCTATATC
CCTAAAGTTGCAATAGATCAGATTGAAAGTACAATTCCTATACCCCTGAAGTTACAATGGGTCAG
GTCGAATC
Found at i:15593061 original size:138 final size:138
Alignment explanation
Indices: 15592754--15593067 Score: 341
Period size: 138 Copynumber: 2.3 Consensus size: 138
15592744 CCCTGAAGTT
* * * * * *
15592754 GAAGTTACCATAGCAAATCTTATCTCCCTAAAGTTGCAGTGGAGTAAGATGGAGCTACAAATCCT
1 GAAGCTACAATAGCAAATCCTATCTCCCTGAAGTTGTAGTGGAGTAAGATGAAGCTACAAATCCT
* * * * *
15592819 ATATCCCTAAGGTTGCAGTGGATCAGATTGAAAGTACAATTCCTATACCCCTGAAGTTACAATGG
66 ATATCCCTAAAGTTGCAATAGATCAGATTGAAAGTACAATTCCTATACCCCTAAAGTTACAATAG
15592884 GTCAGGTC
131 GTCAGGTC
* * * * * *
15592892 GAATCTACCATAGCGAATCTTATCTCTCTGAAGTTGTAGTGGAGTAAGATGAAGCTACAGATCCT
1 GAAGCTACAATAGCAAATCCTATCTCCCTGAAGTTGTAGTGGAGTAAGATGAAGCTACAAATCCT
* * * *
15592957 ATATCCCTAAAGTTGCAATAGATCGGATT-AAAGTTACAATTCCTATACCCCTAAATTTGCAGTA
66 ATATCCCTAAAGTTGCAATAGATCAGATTGAAAG-TACAATTCCTATACCCCTAAAGTTACAATA
*
15593021 GGT-TGGAAT-
130 GGTCAGG--TC
*
15593030 GAAGCTATAACTA-CAAATCCTATAC-CCCTGAAGTTGTA
1 GAAGCTACAA-TAGCAAATCCTAT-CTCCCTGAAGTTGTA
15593068 ATGGGTCAAA
Statistics
Matches: 147, Mismatches: 24, Indels: 10
0.81 0.13 0.06
Matches are distributed among these distances:
137 6 0.04
138 137 0.93
139 4 0.03
ACGTcount: A:0.33, C:0.20, G:0.19, T:0.28
Consensus pattern (138 bp):
GAAGCTACAATAGCAAATCCTATCTCCCTGAAGTTGTAGTGGAGTAAGATGAAGCTACAAATCCT
ATATCCCTAAAGTTGCAATAGATCAGATTGAAAGTACAATTCCTATACCCCTAAAGTTACAATAG
GTCAGGTC
Found at i:15593100 original size:188 final size:189
Alignment explanation
Indices: 15592853--15593202 Score: 504
Period size: 188 Copynumber: 1.9 Consensus size: 189
15592843 AGATTGAAAG
* **
15592853 TACAATTCCTATACCCCTGAAGTTACAATGGGTCAGGTCGAATCTACCATAGCGAATCTTATCTC
1 TACAAATCCTATACCCCTGAAGTTACAATGGGTCAAATCGAATCTACCATAGCGAATCTTATCTC
* * * *
15592918 TCTGAAGTTGTAGTGGAGTAAGATGAAGCTACAGATCCTATATCCCTAAAGTTGCAATAGATCGG
66 TCTAAAGTTGTAGTGGAGTAAGATAAAGCTACAAATCCGATATCCCTAAAGTTGCAATAGATCGG
* *
15592983 ATTAAAGTTACAATTCCTATACCCCT-AAATTTGCAGTAGGTTGGAATGAAGCTATAAC
131 ATTAAAGCTACAATTCCTATACACCTGAAATTTGCAGTAGGTTGGAATGAAGCTATAAC
** * * *
15593041 TACAAATCCTATACCCCTGAAGTTGTAATGGGTCAAATTGAATCTGCCATAGTGAATCTTATCTC
1 TACAAATCCTATACCCCTGAAGTTACAATGGGTCAAATCGAATCTACCATAGCGAATCTTATCTC
* * * * * *
15593106 TCTAAAGTTGTAGTGGAGTAAGATAAAGCTACAAATTCGATATCCCTGAAGTTGTATTGGATTGG
66 TCTAAAGTTGTAGTGGAGTAAGATAAAGCTACAAATCCGATATCCCTAAAGTTGCAATAGATCGG
*
15593171 ATTGAAGCTACAATTCCTATACACCTGAAATT
131 ATTAAAGCTACAATTCCTATACACCTGAAATT
15593203 GCAATGATTT
Statistics
Matches: 140, Mismatches: 21, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
188 135 0.96
189 5 0.04
ACGTcount: A:0.33, C:0.19, G:0.18, T:0.31
Consensus pattern (189 bp):
TACAAATCCTATACCCCTGAAGTTACAATGGGTCAAATCGAATCTACCATAGCGAATCTTATCTC
TCTAAAGTTGTAGTGGAGTAAGATAAAGCTACAAATCCGATATCCCTAAAGTTGCAATAGATCGG
ATTAAAGCTACAATTCCTATACACCTGAAATTTGCAGTAGGTTGGAATGAAGCTATAAC
Found at i:15596209 original size:46 final size:46
Alignment explanation
Indices: 15596129--15596262 Score: 153
Period size: 46 Copynumber: 2.9 Consensus size: 46
15596119 TAATGGGTGA
* * *
15596129 TATGTGAGCTAGTGTAAGACATGTTTGGGGCATGCATCAGCCACAG
1 TATGAGAGCTAGTGTAAGACATGTCTGGGACATGCATCAGCCACAG
* * * ***
15596175 TATGAGAGCCAGTGTAAGACATGTCTAGGACATGCATCGGCGTTGAG
1 TATGAGAGCTAGTGTAAGACATGTCTGGGACATGCATCAGC-CACAG
* *
15596222 -ACGAGAACTAGTGTAAGACATGTCTGGGACATGCATCAGCC
1 TATGAGAGCTAGTGTAAGACATGTCTGGGACATGCATCAGCC
15596263 TCTCGATACA
Statistics
Matches: 72, Mismatches: 15, Indels: 3
0.80 0.17 0.03
Matches are distributed among these distances:
46 70 0.97
47 2 0.03
ACGTcount: A:0.28, C:0.19, G:0.30, T:0.23
Consensus pattern (46 bp):
TATGAGAGCTAGTGTAAGACATGTCTGGGACATGCATCAGCCACAG
Found at i:15596394 original size:49 final size:49
Alignment explanation
Indices: 15596322--15596444 Score: 167
Period size: 49 Copynumber: 2.5 Consensus size: 49
15596312 TGTAGTGTGT
*
15596322 CAGTGTAAGACCTGTCTGGGACATAGCATCGACAC-CGATAGATGATAGC
1 CAGTGTAAGACCTGTCTGGGACATAGCATCGAC-CTCGATAGATGAAAGC
* ** *
15596371 CAGTGTAAGACCTGTCTGGGACATGGCATCGACCTCTCTATATGAAAGC
1 CAGTGTAAGACCTGTCTGGGACATAGCATCGACCTCGATAGATGAAAGC
*
15596420 CAGTGTAAGACCATATCTGGGACAT
1 CAGTGTAAGACC-TGTCTGGGACAT
15596445 GGCGTCGGCA
Statistics
Matches: 66, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
48 1 0.02
49 54 0.82
50 11 0.17
ACGTcount: A:0.29, C:0.23, G:0.25, T:0.23
Consensus pattern (49 bp):
CAGTGTAAGACCTGTCTGGGACATAGCATCGACCTCGATAGATGAAAGC
Found at i:15600142 original size:56 final size:56
Alignment explanation
Indices: 15600056--15600287 Score: 446
Period size: 56 Copynumber: 4.1 Consensus size: 56
15600046 ACAAGGGATG
15600056 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
15600112 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
15600168 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
* *
15600224 ATGGGCAAAACATGTCATCAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
15600280 ATGGGCAA
1 ATGGGCAA
15600288 TAAACTAATA
Statistics
Matches: 174, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
56 174 1.00
ACGTcount: A:0.46, C:0.09, G:0.22, T:0.23
Consensus pattern (56 bp):
ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
Found at i:15603100 original size:18 final size:18
Alignment explanation
Indices: 15603077--15603112 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
15603067 AAGATGGTTG
15603077 GAGTTGATAAAAGACTAT
1 GAGTTGATAAAAGACTAT
*
15603095 GAGTTGATAATAGACTAT
1 GAGTTGATAAAAGACTAT
15603113 CACCTAGGGA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.42, C:0.06, G:0.22, T:0.31
Consensus pattern (18 bp):
GAGTTGATAAAAGACTAT
Found at i:15606111 original size:94 final size:94
Alignment explanation
Indices: 15605913--15606128 Score: 213
Period size: 94 Copynumber: 2.3 Consensus size: 94
15605903 GTGATATATG
* *
15605913 AGCTAGTGTAAGACATGTCTGAGACATGCATTAGCCATAGTATAAGAGCCAGTGTAAGAAATGTT
1 AGCTAGTGTAAGACATGTCTGAGACATGCATTAGCCATAGTACAAGAGCCAGTGTAAGAAATGTC
* ***
15605978 TGGGGAATGCATCGGCATCGAGATATTTA
66 TGGGGAATGCATCGACATCGAGATACACA
* * * * * * * *
15606007 AGCCATTGTAAGACATGTCTGGGACATGCA-TCGGCATTGAG-ACGAGAGCTAGTGTAAGATATG
1 AGCTAGTGTAAGACATGTCTGAGACATGCATTAGCCA-T-AGTACAAGAGCCAGTGTAAGAAATG
* *
15606070 TCT-GGGACATGCATCGACCTCGCGATACACA
64 TCTGGGGA-ATGCATCGACATCGAGATACACA
** *
15606101 AGCTAGTGTAAGACCCGTCTGAAACATG
1 AGCTAGTGTAAGACATGTCTGAGACATG
15606129 GCATCAGCTT
Statistics
Matches: 97, Mismatches: 22, Indels: 6
0.78 0.18 0.05
Matches are distributed among these distances:
93 8 0.08
94 87 0.90
95 2 0.02
ACGTcount: A:0.31, C:0.18, G:0.27, T:0.24
Consensus pattern (94 bp):
AGCTAGTGTAAGACATGTCTGAGACATGCATTAGCCATAGTACAAGAGCCAGTGTAAGAAATGTC
TGGGGAATGCATCGACATCGAGATACACA
Found at i:15611815 original size:26 final size:26
Alignment explanation
Indices: 15611786--15611841 Score: 112
Period size: 26 Copynumber: 2.2 Consensus size: 26
15611776 TGATATAAAT
15611786 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
15611812 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
15611838 TGAT
1 TGAT
15611842 GGGAATTTCA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 30 1.00
ACGTcount: A:0.30, C:0.07, G:0.27, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:15612746 original size:8 final size:8
Alignment explanation
Indices: 15612733--15612762 Score: 51
Period size: 8 Copynumber: 3.8 Consensus size: 8
15612723 AGATCGGCAC
15612733 AAGCCGAA
1 AAGCCGAA
15612741 AAGCCGAA
1 AAGCCGAA
*
15612749 ATGCCGAA
1 AAGCCGAA
15612757 AAGCCG
1 AAGCCG
15612763 GTATTTTGAG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
8 20 1.00
ACGTcount: A:0.43, C:0.27, G:0.27, T:0.03
Consensus pattern (8 bp):
AAGCCGAA
Found at i:15613202 original size:27 final size:26
Alignment explanation
Indices: 15613153--15613257 Score: 122
Period size: 27 Copynumber: 3.9 Consensus size: 26
15613143 AGGAAGTGTC
* *
15613153 CTGGTGGCTATGCTACAATTATCTGAT
1 CTGGTGGCTCTGCCACAA-TATCTGAT
*
15613180 CTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTCTGCCACA-ATATCTGAT
15613207 CTGGTGGCTCTGCCACAATATCTGTAT
1 CTGGTGGCTCTGCCACAATATCTG-AT
* *
15613234 CTGGTGACT-TCGTCACAATATCTG
1 CTGGTGGCTCT-GCCACAATATCTG
15613258 GCAGCCTCGC
Statistics
Matches: 69, Mismatches: 6, Indels: 6
0.85 0.07 0.07
Matches are distributed among these distances:
26 8 0.12
27 60 0.87
28 1 0.01
ACGTcount: A:0.19, C:0.24, G:0.22, T:0.35
Consensus pattern (26 bp):
CTGGTGGCTCTGCCACAATATCTGAT
Found at i:15615957 original size:15 final size:16
Alignment explanation
Indices: 15615927--15615959 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
15615917 CAAACTCGTG
*
15615927 TATTTAATTTATTATA
1 TATTTAATTAATTATA
15615943 TATTTAA-TAATTATA
1 TATTTAATTAATTATA
15615958 TA
1 TA
15615960 ATAATTAACA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 9 0.56
16 7 0.44
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (16 bp):
TATTTAATTAATTATA
Found at i:15624089 original size:27 final size:26
Alignment explanation
Indices: 15624048--15624154 Score: 115
Period size: 27 Copynumber: 4.0 Consensus size: 26
15624038 GAGGAAGCGT
15624048 CCTGGTGGCTATGCCACAATTATCTGA
1 CCTGGTGGCTATGCCAC-ATTATCTGA
* *
15624075 CCTGGTGGCTCTGCCACATATATCTGT
1 CCTGGTGGCTATGCCACAT-TATCTGA
*
15624102 TCTGGTGGCTATGCCACAATTATCTGTA
1 CCTGGTGGCTATGCCAC-ATTATCTG-A
* * * *
15624130 TCTGGTGACTCTGTCACATTATCTG
1 CCTGGTGGCTATGCCACATTATCTG
15624155 TTCTGGCAGC
Statistics
Matches: 69, Mismatches: 8, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
26 2 0.03
27 51 0.74
28 16 0.23
ACGTcount: A:0.19, C:0.25, G:0.21, T:0.35
Consensus pattern (26 bp):
CCTGGTGGCTATGCCACATTATCTGA
Found at i:15624153 original size:54 final size:54
Alignment explanation
Indices: 15624049--15624160 Score: 181
Period size: 54 Copynumber: 2.1 Consensus size: 54
15624039 AGGAAGCGTC
*
15624049 CTGGTGGCTATGCCACAATTATCTGACCTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTATGCCACAATTATCTGACCTGGTGACTCTGCCACATATATCTGTT
* *
15624103 CTGGTGGCTATGCCACAATTATCTGTATCTGGTGACTCTGTCACAT-TATCTGTT
1 CTGGTGGCTATGCCACAATTATCTG-ACCTGGTGACTCTGCCACATATATCTGTT
15624157 CTGG
1 CTGG
15624161 CAGCCATGCT
Statistics
Matches: 54, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
54 37 0.69
55 17 0.31
ACGTcount: A:0.18, C:0.24, G:0.22, T:0.36
Consensus pattern (54 bp):
CTGGTGGCTATGCCACAATTATCTGACCTGGTGACTCTGCCACATATATCTGTT
Found at i:15641903 original size:15 final size:14
Alignment explanation
Indices: 15641879--15641920 Score: 59
Period size: 14 Copynumber: 2.9 Consensus size: 14
15641869 TAATATTTGG
15641879 TTTATTATTTTATT
1 TTTATTATTTTATT
15641893 TTTAGTTA-TTTATT
1 TTTA-TTATTTTATT
15641907 TTTAATTATTTTAT
1 TTT-ATTATTTTAT
15641921 CTGACTTGGA
Statistics
Matches: 25, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
14 16 0.64
15 9 0.36
ACGTcount: A:0.24, C:0.00, G:0.02, T:0.74
Consensus pattern (14 bp):
TTTATTATTTTATT
Found at i:15645924 original size:11 final size:11
Alignment explanation
Indices: 15645908--15645936 Score: 58
Period size: 11 Copynumber: 2.6 Consensus size: 11
15645898 AGAAAAAATA
15645908 AAAGATTTTCC
1 AAAGATTTTCC
15645919 AAAGATTTTCC
1 AAAGATTTTCC
15645930 AAAGATT
1 AAAGATT
15645937 GTAACTCAGT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.41, C:0.14, G:0.10, T:0.34
Consensus pattern (11 bp):
AAAGATTTTCC
Found at i:15659127 original size:90 final size:91
Alignment explanation
Indices: 15659033--15659239 Score: 232
Period size: 90 Copynumber: 2.3 Consensus size: 91
15659023 CTTAAGGATG
15659033 TAAAAA-GCCCTCAAACTTAAAAATAAAAAATAAAACAATTAAG-CCTCTA-TTTTTTTT-AACT
1 TAAAAATGCCCTCAAACTTAAAAA-AAAAAA-AAAACAATTAAGTCC-CTACTTTTTTTTGAACT
* ** *
15659094 CAATTGGGTATTTGAACTTTCAATATGTA
63 CAATTGGATATTTGAACTGACAAAATGTA
*
15659123 TAAAAAATG-CCTCAAACTT---AAAAAAAAAAAACAATTAAGTCCCTACCTTTTTTTTTGCACT
1 T-AAAAATGCCCTCAAACTTAAAAAAAAAAAAAAACAATTAAGTCCCTA-C-TTTTTTTTGAACT
15659184 CAATTGGATATTTGAACTGACAAAATGTA
63 CAATTGGATATTTGAACTGACAAAATGTA
* * *
15659213 TAAAAATACCCTCAAATTTTAAAAAAA
1 TAAAAATGCCCTCAAACTTAAAAAAAA
15659240 TTTAAGCCCC
Statistics
Matches: 99, Mismatches: 7, Indels: 19
0.79 0.06 0.15
Matches are distributed among these distances:
86 15 0.15
87 8 0.08
88 2 0.02
89 14 0.14
90 39 0.39
91 15 0.15
92 1 0.01
93 5 0.05
ACGTcount: A:0.45, C:0.15, G:0.07, T:0.32
Consensus pattern (91 bp):
TAAAAATGCCCTCAAACTTAAAAAAAAAAAAAAACAATTAAGTCCCTACTTTTTTTTGAACTCAA
TTGGATATTTGAACTGACAAAATGTA
Done.