Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr3
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 100348136
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 3062571 characters in sequence are not A, C, G, or T
File 69 of 290
Found at i:22765105 original size:16 final size:16
Alignment explanation
Indices: 22765084--22765115 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
22765074 GAGAATCTAA
22765084 CAAGTTAAGTTACCTG
1 CAAGTTAAGTTACCTG
22765100 CAAGTTAAGTTACCTG
1 CAAGTTAAGTTACCTG
22765116 GTCCAATAGG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.31, C:0.19, G:0.19, T:0.31
Consensus pattern (16 bp):
CAAGTTAAGTTACCTG
Found at i:22766772 original size:144 final size:139
Alignment explanation
Indices: 22766537--22766848 Score: 407
Period size: 144 Copynumber: 2.2 Consensus size: 139
22766527 AATAATGATG
* * * * *
22766537 ATAATGATAATAA-AACTAGCAATAATAATGAAATACAAAAAAAAATAATAATAACGTTAAAATA
1 ATAATAATAATAATAA-TAGTAATAATATTGAAATACAAAAAAAAATAATAAAAACATTAAAATA
* *
22766601 AAGTAATTAAAAATAGTACTATGTATAAATATATATACGTATACATACATATATAATAAAAA-TA
65 AAGTAATTAAAAATAATACTATATATAAATATATATAC--AT--ATACATATATAATAAAAAGTA
22766665 TACACTAATAT-TA
126 TACACTAATATCTA
* *
22766678 ATAATAATAATGATAATAGTAATAATATTGAAATACAAAAAGCAAATATAATAAAAATATTAAAA
1 ATAATAATAATAATAATAGTAATAATATTGAAATACAAAAA--AAA-ATAATAAAAACATTAAAA
*
22766743 TAAAGTAA-TAAAGAATAATACTATATATAAATATATATACATATACGTATATAATAAAAAGTAT
63 TAAAGTAATTAAA-AATAATACTATATATAAATATATATACATATACATATATAATAAAAAGTAT
22766807 ACACTAATATCTA
127 ACACTAATATCTA
* *
22766820 ATAATAATAATAATAATAGTGATGATATT
1 ATAATAATAATAATAATAGTAATAATATT
22766849 AATAATATTA
Statistics
Matches: 151, Mismatches: 13, Indels: 13
0.85 0.07 0.07
Matches are distributed among these distances:
140 17 0.11
141 47 0.31
142 32 0.21
143 7 0.05
144 48 0.32
ACGTcount: A:0.58, C:0.06, G:0.06, T:0.30
Consensus pattern (139 bp):
ATAATAATAATAATAATAGTAATAATATTGAAATACAAAAAAAAATAATAAAAACATTAAAATAA
AGTAATTAAAAATAATACTATATATAAATATATATACATATACATATATAATAAAAAGTATACAC
TAATATCTA
Found at i:22769461 original size:40 final size:40
Alignment explanation
Indices: 22769394--22769478 Score: 118
Period size: 40 Copynumber: 2.1 Consensus size: 40
22769384 TAACATCTTT
* * *
22769394 GGGATTCTCACTATCTGAGTCAACCTCTTCTAATGACTCA
1 GGGATTCTCACTATCAGAGTCAACCTCTTCTAAAGACCCA
*
22769434 GGGATTCTCACTATCCAG-GTCATCCTCTTCTAAAGACCCA
1 GGGATTCTCACTAT-CAGAGTCAACCTCTTCTAAAGACCCA
22769474 GGGAT
1 GGGAT
22769479 AGACATCCCG
Statistics
Matches: 40, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
40 38 0.95
41 2 0.05
ACGTcount: A:0.25, C:0.28, G:0.18, T:0.29
Consensus pattern (40 bp):
GGGATTCTCACTATCAGAGTCAACCTCTTCTAAAGACCCA
Found at i:22772774 original size:27 final size:27
Alignment explanation
Indices: 22772735--22772912 Score: 162
Period size: 27 Copynumber: 6.6 Consensus size: 27
22772725 TTATTGAGCC
* *
22772735 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
* * *
22772762 CACACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
* *
22772789 CGCACACTTAGTGCCACATAGTCAAACT
1 CGCACACTTAGTGCTACATAATC-AACT
** ** *
22772817 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
* **
22772844 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAATCAACT
* *
22772871 CGCACACTTAGTGCAACATAGTCGAA-T
1 CGCACACTTAGTGCTACATAATC-AACT
22772898 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
22772913 GTACAATTTA
Statistics
Matches: 127, Mismatches: 20, Indels: 8
0.82 0.13 0.05
Matches are distributed among these distances:
27 101 0.80
28 26 0.20
ACGTcount: A:0.30, C:0.29, G:0.15, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:22773413 original size:12 final size:12
Alignment explanation
Indices: 22773396--22773422 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
22773386 ATGGCATACT
22773396 TATGTATATATA
1 TATGTATATATA
22773408 TATGTATATATA
1 TATGTATATATA
22773420 TAT
1 TAT
22773423 ACTTCGGAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.41, C:0.00, G:0.07, T:0.52
Consensus pattern (12 bp):
TATGTATATATA
Found at i:22784871 original size:11 final size:11
Alignment explanation
Indices: 22784857--22784901 Score: 54
Period size: 11 Copynumber: 3.9 Consensus size: 11
22784847 AGATAAATAT
22784857 TATTTTATTAA
1 TATTTTATTAA
*
22784868 TATTTTAATAAGA
1 TATTTT-ATTA-A
*
22784881 TATTTTATTAT
1 TATTTTATTAA
22784892 TATTTTATTA
1 TATTTTATTA
22784902 GTATATAAAA
Statistics
Matches: 29, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
11 16 0.55
12 6 0.21
13 7 0.24
ACGTcount: A:0.36, C:0.00, G:0.02, T:0.62
Consensus pattern (11 bp):
TATTTTATTAA
Found at i:22787507 original size:47 final size:47
Alignment explanation
Indices: 22787453--22787904 Score: 805
Period size: 47 Copynumber: 9.6 Consensus size: 47
22787443 TATTTGAATA
22787453 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
22787500 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
22787547 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
22787594 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
22787641 AATGTGAAAGTGTATATATATGTGATAAGGCTTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
22787690 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
22787737 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
22787784 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* * * * * *
22787831 AATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
22787878 GATGTGAAAGTGTATAAATGTGATAAG
1 AATGTGAAAGTGTATATATGTGATAAG
22787905 TCCCGAAGGG
Statistics
Matches: 391, Mismatches: 12, Indels: 4
0.96 0.03 0.01
Matches are distributed among these distances:
47 345 0.88
49 46 0.12
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.29
Consensus pattern (47 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
Found at i:22787774 original size:190 final size:188
Alignment explanation
Indices: 22787453--22787904 Score: 805
Period size: 190 Copynumber: 2.4 Consensus size: 188
22787443 TATTTGAATA
22787453 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
22787518 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGG
66 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGG
22787583 CCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
131 CCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
22787641 AATGTGAAAGTGTATATATATGTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATA
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
22787706 TATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAAT
64 TATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAAT
22787771 GGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
129 GGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* * * * * * * *
22787831 AATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATAAA
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
22787896 TGTGATAAG
66 TGTGATAAG
22787905 TCCCGAAGGG
Statistics
Matches: 252, Mismatches: 10, Indels: 4
0.95 0.04 0.02
Matches are distributed among these distances:
188 65 0.26
190 187 0.74
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.29
Consensus pattern (188 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGG
CCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
Found at i:22788079 original size:37 final size:37
Alignment explanation
Indices: 22788023--22788101 Score: 113
Period size: 37 Copynumber: 2.1 Consensus size: 37
22788013 CCGAGCTCTA
* * *
22788023 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
* *
22788060 AAGATCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
22788097 AAGAC
1 AAGAC
22788102 TTCGTAATAA
Statistics
Matches: 36, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
37 36 1.00
ACGTcount: A:0.24, C:0.18, G:0.32, T:0.27
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:22790041 original size:40 final size:39
Alignment explanation
Indices: 22789957--22790265 Score: 196
Period size: 40 Copynumber: 7.7 Consensus size: 39
22789947 TCGAATGATG
* * * *
22789957 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
22789997 TCCGGACTAAGATCCAAAGGCATTTGTGCGAGTTACTAAT
1 TCCGGGCTAAG-TCCGAAGGCATTTGTGCGAGTTACTAAA
* *
22790037 TCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
*
22790076 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGCGAGTTACTA-AA
* ** * * **
22790117 -CCGGGCTATGTCCCGAAGAGCATTCATGCTAGTGA-TGTA
1 TCCGGGCTAAGT-CCGAAG-GCATTTGTGCGAGTTACTAAA
** * * **
22790156 TCCGGGCTAAGTTCCGAAGAGCATTCATGCTAGTGA-TGTA
1 TCCGGGCTAAG-TCCGAAG-GCATTTGTGCGAGTTACTAAA
** * * **
22790196 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGA-TGTA
1 TCCGGGCTAAGT-CCGAAG-GCATTTGTGCGAGTTACTAAA
*
22790236 TCCGGGCTAAGTTCCGAAGAGCATTCGTGC
1 TCCGGGCTAAG-TCCGAAG-GCATTTGTGC
22790266 TAGTGATATA
Statistics
Matches: 235, Mismatches: 25, Indels: 18
0.85 0.09 0.06
Matches are distributed among these distances:
39 36 0.15
40 175 0.74
41 24 0.10
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.26
Consensus pattern (39 bp):
TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:22790065 original size:39 final size:40
Alignment explanation
Indices: 22789957--22790140 Score: 198
Period size: 40 Copynumber: 4.6 Consensus size: 40
22789947 TCGAATGATG
* * *
22789957 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAC-CAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAT
* *
22789996 ATCCGGACTAAGAT-CCAAAGGCATTTGTGCGAGTTACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
22790037 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
*
22790076 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
22790115 AACCGGGCTATGTCCCGAAGAGCATT
1 -TCCGGGCTAAGTCCCGAAG-GCATT
22790141 CATGCTAGTG
Statistics
Matches: 122, Mismatches: 15, Indels: 13
0.81 0.10 0.09
Matches are distributed among these distances:
39 35 0.29
40 72 0.59
41 15 0.12
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
Found at i:22790267 original size:40 final size:40
Alignment explanation
Indices: 22790037--22790351 Score: 348
Period size: 40 Copynumber: 7.9 Consensus size: 40
22790027 AGTTACTAAT
** * * *
22790037 TCCGGGCTAAG-CCCGAAG-GCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGA-TATA
* ** * *
22790076 TCCGGGTTAAGTCCCGAAG-GCATTTGTGCGAGTTACTATA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGA-TATA
* * *
22790116 ACCGGGCTATGTCCCGAAGAGCATTCATGCTAGTGATGTA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATA
* *
22790156 TCCGGGCTAAGTTCCGAAGAGCATTCATGCTAGTGATGTA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATA
*
22790196 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATA
* *
22790236 TCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATATA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATA
* ** * * *
22790276 TCCGTGCTAAACCCCGAAGAGCATTCGTGCTGGTGTTATA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATA
* * *
22790316 TCCGGGCTAGGTCCCGAAGAGCAATCATGCTGGTGA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGA
22790352 CGTGTATTCG
Statistics
Matches: 243, Mismatches: 31, Indels: 3
0.88 0.11 0.01
Matches are distributed among these distances:
39 10 0.04
40 221 0.91
41 12 0.05
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATA
Found at i:22797323 original size:37 final size:37
Alignment explanation
Indices: 22797267--22797345 Score: 106
Period size: 37 Copynumber: 2.1 Consensus size: 37
22797257 CCGAGCTCTA
* * *
22797267 AAGACCTGATGACTACGTGTGGAGATTTTG-TCTGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTTC-GGGT
*
22797304 AAGACCCGATAACTTCGTGTGGAGATTATGTTCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTTCGGGT
22797341 AAGAC
1 AAGAC
22797346 TTCGTAATAA
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
37 35 0.95
38 2 0.05
ACGTcount: A:0.25, C:0.15, G:0.30, T:0.29
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTTCGGGT
Found at i:22799573 original size:46 final size:46
Alignment explanation
Indices: 22799520--22799885 Score: 435
Period size: 46 Copynumber: 8.0 Consensus size: 46
22799510 GCTTTCTGAA
** * *
22799520 ATGAAATGTGTAATACCATGGTTGAAAGATACCATGGCAACATGAT
1 ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGAC
** * *
22799566 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGAAACATGAG
1 ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGAC
*** * **
22799612 ATGAAATGTGCAAGACCATGGTTGAATGATACCATGGCAATGTGAC
1 ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGAC
* * *
22799658 ATGAAAAGAATAAGACCATGGTTGAGAGATACCATGGCAACATGAT
1 ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGAC
** *
22799704 GGGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACGTGAC
1 ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGAC
* * *
22799750 GTGAAATGCATAAGACCATGGTTGAAAGATACCATGGCAACGTGAC
1 ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGAC
* * *
22799796 ATAAAAAGAATAAGACCATGGTTGAAAGATACCATGGCAATATGAC
1 ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGAC
** * * * * *
22799842 AAAAAATGAGTAAGACCATAGTTGAAAGACACTATGGCATCATG
1 ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATG
22799886 TCAAAGATAA
Statistics
Matches: 280, Mismatches: 40, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
46 280 1.00
ACGTcount: A:0.41, C:0.14, G:0.24, T:0.21
Consensus pattern (46 bp):
ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGAC
Found at i:22799768 original size:138 final size:138
Alignment explanation
Indices: 22799534--22799885 Score: 499
Period size: 138 Copynumber: 2.6 Consensus size: 138
22799524 AATGTGTAAT
* *
22799534 ACCATGGTTGAAAGATACCATGGCAACATGATATGAAATGTGTAAGACCATGGTTGAAAGATACC
1 ACCATGGTTGAAAGATACCATGGCAACATGATAAGAAATGAGTAAGACCATGGTTGAAAGATACC
* ** * * *
22799599 ATGGAAACATGAGATGAAATGTGCAAGACCATGGTTGAATGATACCATGGCAATGTGACATGAAA
66 ATGGCAACATGAGATGAAATGCACAAGACCATGGTTGAAAGATACCATGGCAACGTGACATAAAA
22799664 AGAATAAG
131 AGAATAAG
* ** *
22799672 ACCATGGTTGAGAGATACCATGGCAACATGATGGGAAATGAATAAGACCATGGTTGAAAGATACC
1 ACCATGGTTGAAAGATACCATGGCAACATGATAAGAAATGAGTAAGACCATGGTTGAAAGATACC
* *
22799737 ATGGCAACGTGACG-TGAAATGCATAAGACCATGGTTGAAAGATACCATGGCAACGTGACATAAA
66 ATGGCAACATGA-GATGAAATGCACAAGACCATGGTTGAAAGATACCATGGCAACGTGACATAAA
22799801 AAGAATAAG
130 AAGAATAAG
* * * * * *
22799810 ACCATGGTTGAAAGATACCATGGCAATATGACAAAAAATGAGTAAGACCATAGTTGAAAGACACT
1 ACCATGGTTGAAAGATACCATGGCAACATGATAAGAAATGAGTAAGACCATGGTTGAAAGATACC
*
22799875 ATGGCATCATG
66 ATGGCAACATG
22799886 TCAAAGATAA
Statistics
Matches: 188, Mismatches: 25, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
138 187 0.99
139 1 0.01
ACGTcount: A:0.41, C:0.14, G:0.24, T:0.20
Consensus pattern (138 bp):
ACCATGGTTGAAAGATACCATGGCAACATGATAAGAAATGAGTAAGACCATGGTTGAAAGATACC
ATGGCAACATGAGATGAAATGCACAAGACCATGGTTGAAAGATACCATGGCAACGTGACATAAAA
AGAATAAG
Found at i:22803753 original size:27 final size:27
Alignment explanation
Indices: 22803701--22803796 Score: 95
Period size: 27 Copynumber: 3.6 Consensus size: 27
22803691 GGAAGTACTC
* * *
22803701 TACTAGTGACTATGTCAC-ATTCACTGT
1 TACTGGTGGCTATGCCACAATT-ACTGT
*
22803728 TACTGGTGGCTATGCCACAATTACTGA
1 TACTGGTGGCTATGCCACAATTACTGT
* * *
22803755 TACTGGTGGCTTTGCCACATTTATTGT
1 TACTGGTGGCTATGCCACAATTACTGT
* *
22803782 TTCTGGTAGCTATGC
1 TACTGGTGGCTATGC
22803797 TTCATTATTA
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
27 54 0.95
28 3 0.05
ACGTcount: A:0.21, C:0.21, G:0.21, T:0.38
Consensus pattern (27 bp):
TACTGGTGGCTATGCCACAATTACTGT
Found at i:22807828 original size:27 final size:27
Alignment explanation
Indices: 22807776--22807862 Score: 86
Period size: 27 Copynumber: 3.2 Consensus size: 27
22807766 GAAAGTACTG
* * *
22807776 TACTGGTGACTATGTCAC-GTTCATTGT
1 TACTGGTGGCTATGCCACAATT-ATTGT
*
22807803 TACTGGTGGCTATGCCACAATTATTGA
1 TACTGGTGGCTATGCCACAATTATTGT
* * *
22807830 TACTGGTGGCTTTGCCACATTTAATGT
1 TACTGGTGGCTATGCCACAATTATTGT
*
22807857 TTCTGG
1 TACTGG
22807863 CAGCCATGCT
Statistics
Matches: 50, Mismatches: 9, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
27 48 0.96
28 2 0.04
ACGTcount: A:0.20, C:0.18, G:0.23, T:0.39
Consensus pattern (27 bp):
TACTGGTGGCTATGCCACAATTATTGT
Found at i:22813350 original size:9 final size:9
Alignment explanation
Indices: 22813338--22813364 Score: 54
Period size: 9 Copynumber: 3.0 Consensus size: 9
22813328 GTTTATTATA
22813338 TACATATTT
1 TACATATTT
22813347 TACATATTT
1 TACATATTT
22813356 TACATATTT
1 TACATATTT
22813365 AACCTTCAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 18 1.00
ACGTcount: A:0.33, C:0.11, G:0.00, T:0.56
Consensus pattern (9 bp):
TACATATTT
Found at i:22815179 original size:62 final size:62
Alignment explanation
Indices: 22815102--22815286 Score: 361
Period size: 62 Copynumber: 3.0 Consensus size: 62
22815092 AGACATAATG
*
22815102 CTATACTAACACAATAAGTATCAGATAACTCAGAATTCTACCTTATCAGCTCAATCACTTAT
1 CTATACTAATACAATAAGTATCAGATAACTCAGAATTCTACCTTATCAGCTCAATCACTTAT
22815164 CTATACTAATACAATAAGTATCAGATAACTCAGAATTCTACCTTATCAGCTCAATCACTTAT
1 CTATACTAATACAATAAGTATCAGATAACTCAGAATTCTACCTTATCAGCTCAATCACTTAT
22815226 CTATACTAATACAATAAGTATCAGATAACTCAGAATTCTACCTTATCAGCTCAATCACTTA
1 CTATACTAATACAATAAGTATCAGATAACTCAGAATTCTACCTTATCAGCTCAATCACTTA
22815287 AATTGAAAGA
Statistics
Matches: 122, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
62 122 1.00
ACGTcount: A:0.39, C:0.23, G:0.06, T:0.31
Consensus pattern (62 bp):
CTATACTAATACAATAAGTATCAGATAACTCAGAATTCTACCTTATCAGCTCAATCACTTAT
Found at i:22817362 original size:43 final size:43
Alignment explanation
Indices: 22817281--22817364 Score: 107
Period size: 43 Copynumber: 2.0 Consensus size: 43
22817271 ATCAAATACG
* * *
22817281 ATGCCAATGTCCCTGACATGGTCTTAAACATAATCACATATTA
1 ATGCCAAAGTCCCAGACATGGTCTTAAACATAAACACATATTA
* *
22817324 ATGCCAAAGTCCCAGACGTGGTCTTACACA-AGAACACATAT
1 ATGCCAAAGTCCCAGACATGGTCTTAAACATA-AACACATAT
22817365 CGGAAATCCT
Statistics
Matches: 35, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
42 1 0.03
43 34 0.97
ACGTcount: A:0.36, C:0.25, G:0.14, T:0.25
Consensus pattern (43 bp):
ATGCCAAAGTCCCAGACATGGTCTTAAACATAAACACATATTA
Found at i:22825116 original size:43 final size:43
Alignment explanation
Indices: 22824985--22825119 Score: 125
Period size: 43 Copynumber: 3.2 Consensus size: 43
22824975 TACATGCCAT
* * * * *
22824985 CACATATTGATGCCACTATCCCAGATAGGGTCTTACAC--GAA
1 CACATATCGATGCCAATGTCCCAGACATGGTCTTACACAAGAA
* * *
22825026 TCAAATA-CGATGCCAATGTCCCAGACATGGTTTTACACATA-AT
1 -CACATATCGATGCCAATGTCCCAGACATGGTCTTACACA-AGAA
* * *
22825069 CACATATCGATGCTAATGTCTCAGACGTGGTCTTACACAAGAA
1 CACATATCGATGCCAATGTCCCAGACATGGTCTTACACAAGAA
22825112 CACATATC
1 CACATATC
22825120 AAAAATCCTA
Statistics
Matches: 74, Mismatches: 14, Indels: 9
0.76 0.14 0.09
Matches are distributed among these distances:
41 25 0.34
42 11 0.15
43 38 0.51
ACGTcount: A:0.33, C:0.25, G:0.16, T:0.26
Consensus pattern (43 bp):
CACATATCGATGCCAATGTCCCAGACATGGTCTTACACAAGAA
Found at i:22828399 original size:49 final size:50
Alignment explanation
Indices: 22828276--22828412 Score: 168
Period size: 50 Copynumber: 2.8 Consensus size: 50
22828266 GTGAGAACAC
* *
22828276 GTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAGGTCACGT
1 GTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATGGTTAGGTCACAT
* * * *
22828326 GTGTAGTACCAAGTGTAGGCTACTACGTGTACCAGATTGTT-GGTCGCAT
1 GTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATGGTTAGGTCACAT
* * * * *
22828375 GTGTACTACTAAGTGCAAGTTACTATGCGTACCAGATG
1 GTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATG
22828413 CTTCAATTAC
Statistics
Matches: 73, Mismatches: 14, Indels: 1
0.83 0.16 0.01
Matches are distributed among these distances:
49 36 0.49
50 37 0.51
ACGTcount: A:0.25, C:0.18, G:0.28, T:0.30
Consensus pattern (50 bp):
GTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATGGTTAGGTCACAT
Found at i:22828631 original size:16 final size:15
Alignment explanation
Indices: 22828610--22828639 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
22828600 GAATGGAGTA
22828610 AGTGAAATTATGTAAG
1 AGTGAAATT-TGTAAG
22828626 AGTGAAATTTGTAA
1 AGTGAAATTTGTAA
22828640 TAAAACAGTT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.43, C:0.00, G:0.23, T:0.33
Consensus pattern (15 bp):
AGTGAAATTTGTAAG
Found at i:22831463 original size:53 final size:54
Alignment explanation
Indices: 22831400--22831593 Score: 212
Period size: 53 Copynumber: 3.6 Consensus size: 54
22831390 TTCCTTTTTA
*
22831400 AACTTACCATTGCCATGTCTTGACATGGTCTTCCATGGTATCCTTGCCTTAT-G
1 AACTTACCATTGCCATGCCTTGACATGGTCTTCCATGGTATCCTTGCCTTATAG
* * * *
22831453 AACTCACCATTGCCATGCCTTGGCATGGTCTTCCATGGGATCTTTGCCTTATAG
1 AACTTACCATTGCCATGCCTTGACATGGTCTTCCATGGTATCCTTGCCTTATAG
** * * * * * * *
22831507 TAGTTTATCAATT-CCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTGTAA
1 -AACTTA-CCATTGCCATGCCTTGACATGGTCTTCCATGGTATCCTTGCCTTATAG
* *
22831562 AACTTACCAATGCCATGCCTTGGCATGGTCTT
1 AACTTACCATTGCCATGCCTTGACATGGTCTT
22831594 ACTTAGTATC
Statistics
Matches: 113, Mismatches: 24, Indels: 7
0.78 0.17 0.05
Matches are distributed among these distances:
53 50 0.44
54 23 0.20
55 36 0.32
56 4 0.04
ACGTcount: A:0.20, C:0.25, G:0.18, T:0.37
Consensus pattern (54 bp):
AACTTACCATTGCCATGCCTTGACATGGTCTTCCATGGTATCCTTGCCTTATAG
Found at i:22839000 original size:53 final size:53
Alignment explanation
Indices: 22838900--22839004 Score: 129
Period size: 53 Copynumber: 2.0 Consensus size: 53
22838890 TTCCTTTTTA
* * * ** * *
22838900 AACTTGCCATTGTCATGTCTTGACATGGTCTTATGTGGTATCCTTGCCTTATG
1 AACTCGCCATTGCCATGCCTTGACATGGTCTTACATGGGATACTTGCCTTATG
* *
22838953 AACTCGCCATTGCCATGCCTTGGCATGGTCTTACATGGGATATTTGCCTTAT
1 AACTCGCCATTGCCATGCCTTGACATGGTCTTACATGGGATACTTGCCTTAT
22839005 AGTAGTTTTT
Statistics
Matches: 43, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
53 43 1.00
ACGTcount: A:0.18, C:0.23, G:0.21, T:0.38
Consensus pattern (53 bp):
AACTCGCCATTGCCATGCCTTGACATGGTCTTACATGGGATACTTGCCTTATG
Found at i:22848426 original size:14 final size:14
Alignment explanation
Indices: 22848385--22848430 Score: 51
Period size: 14 Copynumber: 3.4 Consensus size: 14
22848375 ATGCAAAATT
22848385 AAGAGAAAAA-GAAG
1 AAGA-AAAAAGGAAG
* *
22848399 AA-AGAAAAGAAAG
1 AAGAAAAAAGGAAG
22848412 AAGAAAAAAGGAAG
1 AAGAAAAAAGGAAG
22848426 AAGAA
1 AAGAA
22848431 CACACGGCCA
Statistics
Matches: 26, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
12 4 0.15
13 6 0.23
14 16 0.62
ACGTcount: A:0.74, C:0.00, G:0.26, T:0.00
Consensus pattern (14 bp):
AAGAAAAAAGGAAG
Found at i:22850733 original size:40 final size:40
Alignment explanation
Indices: 22850670--22850982 Score: 425
Period size: 40 Copynumber: 7.8 Consensus size: 40
22850660 ATTTGAATTT
* *
22850670 TATCCGGGCTAAGTCCCGAAGGCAATTGTGCTAG-TGAGTA
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTTGA-TA
* *
22850710 TATCCGGGCTAAGACCCGCAGGCATTTGTGCGAGTTGATA
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTTGATA
*
22850750 TATCCGGGCTAAGACCC-ACAGGCATTTGTGCGAGTTGATA
1 TATCCGGGCTAAGACCCGA-AGGCAATTGTGCGAGTTGATA
* * *
22850790 TATCCGGGCTAAGACCCGCAGGCATTTGTGCAAGTTGATA
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTTGATA
* *
22850830 TATCCGGGCTAAGACCCGCAGGCATTTGTGCGAGTTGATATA
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTTG--ATA
*
22850872 TATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTGATA
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTTGATA
*
22850912 TATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTGCTA
1 TATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGTTGATA
** *
22850952 TGCCCGGGTTAAGACCCGAAGGCAATTGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC
22850983 TTGTGGTAAT
Statistics
Matches: 250, Mismatches: 16, Indels: 14
0.89 0.06 0.05
Matches are distributed among these distances:
39 3 0.01
40 204 0.82
41 6 0.02
42 37 0.15
ACGTcount: A:0.25, C:0.22, G:0.29, T:0.24
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTTGATA
Found at i:22850998 original size:162 final size:160
Alignment explanation
Indices: 22850670--22850982 Score: 448
Period size: 162 Copynumber: 1.9 Consensus size: 160
22850660 ATTTGAATTT
* * * * *
22850670 TATCCGGGCTAAGTCCCGAAGGCAATTGTGCTAGTGAGTATATCCGGGCTAAGACCCGCAGGCAT
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTGAATATATCCGGGCTAAGACCCGAAGGCAA
* * *
22850735 TTGTGCGAGTTGATATATCCGGGCTAAGACCCACAGGCATTTGTGCGAGTTGATATATCCGGGCT
66 TTGTGCAAGTTGATATATCCGGGCTAAGACCCACAGGCATTCGTGCGAGTTGATATACCCGGGCT
* * *
22850800 AAGACCCGCAGGCATTTGTGCAAGTTGATA
131 AAGACCCGAAGGCAATTGTGCAAGTGGATA
* *
22850830 TATCCGGGCTAAGACCCGCAGGCATTTGTGCGAGTTGATATATATCCGGGCTAAGACCCGAAGGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAG-TGA-ATATATCCGGGCTAAGACCCGAAGGC
* *
22850895 AATTGTGCAAGTTGATATATCCGGGCTAAGACCCGA-AGGCATTCGTGCGAGTTGCTATGCCCGG
64 AATTGTGCAAGTTGATATATCCGGGCTAAGACCC-ACAGGCATTCGTGCGAGTTGATATACCCGG
*
22850959 GTTAAGACCCGAAGGCAATTGTGC
128 GCTAAGACCCGAAGGCAATTGTGC
22850983 TTGTGGTAAT
Statistics
Matches: 135, Mismatches: 15, Indels: 4
0.88 0.10 0.03
Matches are distributed among these distances:
160 30 0.22
161 3 0.02
162 101 0.75
163 1 0.01
ACGTcount: A:0.25, C:0.22, G:0.29, T:0.24
Consensus pattern (160 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTGAATATATCCGGGCTAAGACCCGAAGGCAA
TTGTGCAAGTTGATATATCCGGGCTAAGACCCACAGGCATTCGTGCGAGTTGATATACCCGGGCT
AAGACCCGAAGGCAATTGTGCAAGTGGATA
Found at i:22856546 original size:33 final size:33
Alignment explanation
Indices: 22856509--22856575 Score: 134
Period size: 33 Copynumber: 2.0 Consensus size: 33
22856499 ATTATAGTTC
22856509 ATAGACTAAATTATAAAAGTTCAATCTCTATTG
1 ATAGACTAAATTATAAAAGTTCAATCTCTATTG
22856542 ATAGACTAAATTATAAAAGTTCAATCTCTATTG
1 ATAGACTAAATTATAAAAGTTCAATCTCTATTG
22856575 A
1 A
22856576 ATTTTAATAT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 34 1.00
ACGTcount: A:0.43, C:0.12, G:0.09, T:0.36
Consensus pattern (33 bp):
ATAGACTAAATTATAAAAGTTCAATCTCTATTG
Found at i:22861382 original size:59 final size:59
Alignment explanation
Indices: 22861304--22861422 Score: 220
Period size: 59 Copynumber: 2.0 Consensus size: 59
22861294 TGGGTTGAAT
* *
22861304 AACAATATCTCAAAGTTGTGTTTTTTAGTCATACTAGTGCCATCTATTTATAGGGAAAG
1 AACAATATCTCAAAGTTGTGTTTTTTAGTCATACTAGTGACATCTAATTATAGGGAAAG
22861363 AACAATATCTCAAAGTTGTGTTTTTTAGTCATACTAGTGACATCTAATTATAGGGAAAG
1 AACAATATCTCAAAGTTGTGTTTTTTAGTCATACTAGTGACATCTAATTATAGGGAAAG
22861422 A
1 A
22861423 TAGAAGAAAC
Statistics
Matches: 58, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
59 58 1.00
ACGTcount: A:0.34, C:0.13, G:0.17, T:0.36
Consensus pattern (59 bp):
AACAATATCTCAAAGTTGTGTTTTTTAGTCATACTAGTGACATCTAATTATAGGGAAAG
Found at i:22874686 original size:103 final size:99
Alignment explanation
Indices: 22874495--22874706 Score: 226
Period size: 103 Copynumber: 2.1 Consensus size: 99
22874485 AATGTTTAAA
* ** * * **
22874495 TGTAAGACCATAGCTGGGCTTTGGCATTTTAACGAAAAAACCATAACCGGGTTGTGGCACCTTGA
1 TGTAAGACCATAGCTGGGCTATGGCATCCTAACGAAAAAACCATAACCGGGTTATAGCACAATGA
** *
22874560 ACGTAAGACCATGGGTGGACCATGGTAGTATATATATG
66 ACGTAAGACCATGGCAGGACCAT-G--GCA-ATATATG
* * * * **
22874598 TGTAAGACCATAGCTGGGCTATGGCATCCTGATGATAAGACCATAATTGGGTTATAGCACAATGA
1 TGTAAGACCATAGCTGGGCTATGGCATCCTAACGAAAAAACCATAACCGGGTTATAGCACAATGA
* *
22874663 ATGTAAGACCATGGCAGGGCCATGGCAATATATG
66 ACGTAAGACCATGGCAGGACCATGGCAATATATG
22874697 TGTAAGACCA
1 TGTAAGACCA
22874707 GAGTTAGACT
Statistics
Matches: 91, Mismatches: 18, Indels: 4
0.81 0.16 0.04
Matches are distributed among these distances:
99 17 0.19
100 2 0.02
102 1 0.01
103 71 0.78
ACGTcount: A:0.32, C:0.17, G:0.26, T:0.25
Consensus pattern (99 bp):
TGTAAGACCATAGCTGGGCTATGGCATCCTAACGAAAAAACCATAACCGGGTTATAGCACAATGA
ACGTAAGACCATGGCAGGACCATGGCAATATATG
Found at i:22878551 original size:34 final size:34
Alignment explanation
Indices: 22878499--22878568 Score: 122
Period size: 34 Copynumber: 2.1 Consensus size: 34
22878489 GTTCATGCTA
*
22878499 CACGTCGCAGAGAGGACAGAGATGCTCTTGACGT
1 CACGTCGCAGAGAAGACAGAGATGCTCTTGACGT
*
22878533 CACGTCGCCGAGAAGACAGAGATGCTCTTGACGT
1 CACGTCGCAGAGAAGACAGAGATGCTCTTGACGT
22878567 CA
1 CA
22878569 TCACTGGTAC
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
34 34 1.00
ACGTcount: A:0.27, C:0.26, G:0.30, T:0.17
Consensus pattern (34 bp):
CACGTCGCAGAGAAGACAGAGATGCTCTTGACGT
Found at i:22882154 original size:17 final size:17
Alignment explanation
Indices: 22882120--22882161 Score: 50
Period size: 17 Copynumber: 2.4 Consensus size: 17
22882110 ATTGATAACA
22882120 TATAAAAATTTCAGAACT
1 TATAAAAATTTCA-AACT
22882138 TATAAAAATTTTC-AACT
1 TATAAAAA-TTTCAAACT
*
22882155 TTTAAAA
1 TATAAAA
22882162 GGTCACACGC
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
17 10 0.45
18 8 0.36
19 4 0.18
ACGTcount: A:0.50, C:0.10, G:0.02, T:0.38
Consensus pattern (17 bp):
TATAAAAATTTCAAACT
Found at i:22891843 original size:47 final size:47
Alignment explanation
Indices: 22891791--22892245 Score: 676
Period size: 47 Copynumber: 9.6 Consensus size: 47
22891781 GATAATTGTG
* *
22891791 ATGTGAATGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* *
22891838 ATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
22891885 ATGTGAAAGTGTATATATATGTGATAAGGCTTAATGGCCGATGTGATGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* *
22891934 ATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
22891981 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATAGCCGATGTGATGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* *
22892030 ATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
22892077 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATAGCCGATGTGATGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
22892126 ATGTGAAAGTGTATATATGTGATGAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* * * * * * *
22892173 ATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGG
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
22892220 ATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGAAAGTGTATATATGTGATAAG
22892246 TCCCGAAGGG
Statistics
Matches: 370, Mismatches: 32, Indels: 12
0.89 0.08 0.03
Matches are distributed among these distances:
47 238 0.64
49 132 0.36
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.29
Consensus pattern (47 bp):
ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
Found at i:22891898 original size:96 final size:96
Alignment explanation
Indices: 22891791--22892245 Score: 756
Period size: 96 Copynumber: 4.8 Consensus size: 96
22891781 GATAATTGTG
22891791 ATGTG-AA-TGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
22891854 ATGTGATAAGGCCGAATGGCCAATGTGATGA
66 ATGTGATAAGGCCGAATGGCCAATGTGATGA
*
22891885 ATGTGAAAGTGTATATATATGTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
22891950 ATGTGATAAGGCCGAATGGCCAATGTGATGA
66 ATGTGATAAGGCCGAATGGCCAATGTGATGA
*
22891981 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATAT
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
22892046 ATGTGATAAGGCCGAATGGCCAATGTGATGA
66 ATGTGATAAGGCCGAATGGCCAATGTGATGA
*
22892077 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATAT
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
* * *
22892142 ATGTGATGAGGCCTAATGGCCGATGTGATGA
66 ATGTGATAAGGCCGAATGGCCAATGTGATGA
* * * * * * * *
22892173 ATGTGAAAGTG--TATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATAA
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
22892236 ATGTGATAAG
66 ATGTGATAAG
22892246 TCCCGAAGGG
Statistics
Matches: 343, Mismatches: 16, Indels: 4
0.94 0.04 0.01
Matches are distributed among these distances:
94 57 0.17
95 2 0.01
96 284 0.83
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.29
Consensus pattern (96 bp):
ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
ATGTGATAAGGCCGAATGGCCAATGTGATGA
Found at i:22906326 original size:23 final size:22
Alignment explanation
Indices: 22906241--22906330 Score: 65
Period size: 23 Copynumber: 3.8 Consensus size: 22
22906231 GGACTCACCA
*
22906241 CAGCTCGTATGAGCTTAACAATATAT
1 CAGCTCGTATGAGCTT-AC-CT-T-T
* *
22906267 TAGCTCGTAAGAGCTTACTCTTT
1 CAGCTCGTATGAGCTTAC-CTTT
* *
22906290 CATCTCAT-TGGAGCTTACCGTTT
1 CAGCTCGTAT-GAGCTTACC-TTT
22906313 CAGCTCGTATGAGCTTAC
1 CAGCTCGTATGAGCTTAC
22906331 TGTTCATCAG
Statistics
Matches: 51, Mismatches: 10, Indels: 9
0.73 0.14 0.13
Matches are distributed among these distances:
22 1 0.02
23 31 0.61
24 2 0.04
25 3 0.06
26 14 0.27
ACGTcount: A:0.24, C:0.23, G:0.18, T:0.34
Consensus pattern (22 bp):
CAGCTCGTATGAGCTTACCTTT
Found at i:22907082 original size:85 final size:85
Alignment explanation
Indices: 22906766--22907071 Score: 603
Period size: 85 Copynumber: 3.6 Consensus size: 85
22906756 GGCCGGCCAT
22906766 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
1 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
22906831 GTAAGGATTAATAAAATAAA
66 GTAAGGATTAATAAAATAAA
22906851 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
1 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
22906916 GTAAGGATTAATAAAATAAA
66 GTAAGGATTAATAAAATAAA
22906936 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
1 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
22907001 GTAAGGATTAATAAAATAAA
66 GTAAGGATTAATAAAATAAA
*
22907021 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAGACATGTTG
1 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTG
22907072 TGTTGGTGCA
Statistics
Matches: 220, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
85 220 1.00
ACGTcount: A:0.38, C:0.09, G:0.26, T:0.27
Consensus pattern (85 bp):
GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
GTAAGGATTAATAAAATAAA
Found at i:22909087 original size:47 final size:47
Alignment explanation
Indices: 22909033--22909186 Score: 236
Period size: 47 Copynumber: 3.3 Consensus size: 47
22909023 TACGTGAAAG
22909033 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
22909080 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
* * * * * * *
22909127 TATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
*
22909174 TAAATGTGATAAG
1 TATATGTGATAAG
22909187 TCCCGAAGGG
Statistics
Matches: 97, Mismatches: 10, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
47 97 1.00
ACGTcount: A:0.32, C:0.09, G:0.31, T:0.28
Consensus pattern (47 bp):
TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
Found at i:22909361 original size:37 final size:37
Alignment explanation
Indices: 22909305--22909383 Score: 113
Period size: 37 Copynumber: 2.1 Consensus size: 37
22909295 CCGAGCTCTA
* * * *
22909305 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGAGT
*
22909342 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGAGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGAGT
22909379 AAGAC
1 AAGAC
22909384 TTCGTAATAA
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.25, C:0.19, G:0.30, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGAGT
Found at i:22913276 original size:53 final size:53
Alignment explanation
Indices: 22913213--22913316 Score: 190
Period size: 53 Copynumber: 2.0 Consensus size: 53
22913203 CTTATTTGGA
* *
22913213 TAGATTTTTGGTTTTGTTTATCGATGATATATTGATCTATTCCAAGTCAAATT
1 TAGATTTTTGGTTGTGTTTATCAATGATATATTGATCTATTCCAAGTCAAATT
22913266 TAGATTTTTGGTTGTGTTTATCAATGATATATTGATCTATTCCAAGTCAAA
1 TAGATTTTTGGTTGTGTTTATCAATGATATATTGATCTATTCCAAGTCAAA
22913317 ATCTGAGTAT
Statistics
Matches: 49, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
53 49 1.00
ACGTcount: A:0.28, C:0.10, G:0.15, T:0.47
Consensus pattern (53 bp):
TAGATTTTTGGTTGTGTTTATCAATGATATATTGATCTATTCCAAGTCAAATT
Found at i:22920410 original size:21 final size:20
Alignment explanation
Indices: 22920378--22920418 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 20
22920368 ATACATGAGT
22920378 ATTTTGATGTTTAATGATAG
1 ATTTTGATGTTTAATGATAG
*
22920398 ATTTTGAATGTTTGATGATAG
1 ATTTTG-ATGTTTAATGATAG
22920419 TTATACAAGT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 6 0.32
21 13 0.68
ACGTcount: A:0.29, C:0.00, G:0.22, T:0.49
Consensus pattern (20 bp):
ATTTTGATGTTTAATGATAG
Found at i:22921027 original size:50 final size:46
Alignment explanation
Indices: 22920919--22921033 Score: 140
Period size: 46 Copynumber: 2.4 Consensus size: 46
22920909 GCTAATTATG
* *
22920919 TGCACTTAGTGTACGAAATCAAGATAGCTTCAGCTATATATATATT
1 TGCACTTAGTGTGCGAGATCAAGATAGCTTCAGCTATATATATATT
* * *
22920965 TGCACTTGGTGTGCGAGATCGAGATAGCTTTAGCTATATATATTTATAT
1 TGCACTTAGTGTGCGAGATCAAGATAGCTTCAGCTATATATA--TAT-T
*
22921014 TGGCACTTAGTGTGCAAGAT
1 T-GCACTTAGTGTGCGAGAT
22921034 TGATACAACT
Statistics
Matches: 58, Mismatches: 7, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
46 37 0.64
48 3 0.05
49 2 0.03
50 16 0.28
ACGTcount: A:0.30, C:0.14, G:0.21, T:0.36
Consensus pattern (46 bp):
TGCACTTAGTGTGCGAGATCAAGATAGCTTCAGCTATATATATATT
Found at i:22924861 original size:21 final size:21
Alignment explanation
Indices: 22924835--22924890 Score: 67
Period size: 21 Copynumber: 2.7 Consensus size: 21
22924825 GGTGTGTGAC
22924835 TCACACGGCCATGTCACTAGA
1 TCACACGGCCATGTCACTAGA
* * * *
22924856 TCACACGGCGATATCGCTAGG
1 TCACACGGCCATGTCACTAGA
*
22924877 TCACACGGCTATGT
1 TCACACGGCCATGT
22924891 TGAGAGCCTG
Statistics
Matches: 29, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 29 1.00
ACGTcount: A:0.25, C:0.30, G:0.23, T:0.21
Consensus pattern (21 bp):
TCACACGGCCATGTCACTAGA
Found at i:22925789 original size:18 final size:19
Alignment explanation
Indices: 22925747--22925821 Score: 84
Period size: 18 Copynumber: 4.1 Consensus size: 19
22925737 CCAATCAATT
* *
22925747 AATCAATATCATTCAGAAAC
1 AATCAAT-TTATTCAGTAAC
* *
22925767 AATCAATTT-TTTAGTAGC
1 AATCAATTTATTCAGTAAC
22925785 AATC-ATTTATTCAGTAAC
1 AATCAATTTATTCAGTAAC
22925803 AATCAA-TTATTCAGTAAC
1 AATCAATTTATTCAGTAAC
22925821 A
1 A
22925822 GTCAGTCATT
Statistics
Matches: 47, Mismatches: 6, Indels: 6
0.80 0.10 0.10
Matches are distributed among these distances:
17 4 0.09
18 34 0.72
19 2 0.04
20 7 0.15
ACGTcount: A:0.43, C:0.16, G:0.07, T:0.35
Consensus pattern (19 bp):
AATCAATTTATTCAGTAAC
Found at i:22925832 original size:18 final size:18
Alignment explanation
Indices: 22925754--22925836 Score: 76
Period size: 18 Copynumber: 4.6 Consensus size: 18
22925744 ATTAATCAAT
*
22925754 ATCATTCAGAAACAATCA
1 ATCATTCAGTAACAATCA
** * *
22925772 ATTTTTTAGTAGCAATCA
1 ATCATTCAGTAACAATCA
* *
22925790 TTTATTCAGTAACAATCA
1 ATCATTCAGTAACAATCA
* *
22925808 ATTATTCAGTAACAGTCA
1 ATCATTCAGTAACAATCA
*
22925826 GTCATTCAGTA
1 ATCATTCAGTA
22925837 CCTTTATTCA
Statistics
Matches: 52, Mismatches: 13, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
18 52 1.00
ACGTcount: A:0.39, C:0.17, G:0.10, T:0.35
Consensus pattern (18 bp):
ATCATTCAGTAACAATCA
Found at i:22925833 original size:36 final size:36
Alignment explanation
Indices: 22925755--22925836 Score: 101
Period size: 36 Copynumber: 2.3 Consensus size: 36
22925745 TTAATCAATA
* * * * *
22925755 TCATTCAGAAACAATCAATTTTTTAGTAGCAATCAT
1 TCATTCAGTAACAATCAATTATTCAGTAACAATCAG
* *
22925791 TTATTCAGTAACAATCAATTATTCAGTAACAGTCAG
1 TCATTCAGTAACAATCAATTATTCAGTAACAATCAG
22925827 TCATTCAGTA
1 TCATTCAGTA
22925837 CCTTTATTCA
Statistics
Matches: 38, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
36 38 1.00
ACGTcount: A:0.38, C:0.17, G:0.10, T:0.35
Consensus pattern (36 bp):
TCATTCAGTAACAATCAATTATTCAGTAACAATCAG
Found at i:22925998 original size:47 final size:47
Alignment explanation
Indices: 22925900--22926000 Score: 114
Period size: 47 Copynumber: 2.1 Consensus size: 47
22925890 ACCAACACAC
* * * ** *
22925900 CAGTATGGCACTCAGTGCCTCATCGGCTTTGCCGAAGTAAATAGTAA
1 CAGTACGGCACTCAGTACCTCATCGGATTAACCGAAGTAAACAGTAA
* *
22925947 CAGTACGGTACTCAGTACCTCATCGGATTAAACCGAAGT-AACAGTAG
1 CAGTACGGCACTCAGTACCTCATCGGATT-AACCGAAGTAAACAGTAA
22925994 CAGTACG
1 CAGTACG
22926001 ACACACTGGT
Statistics
Matches: 45, Mismatches: 8, Indels: 2
0.82 0.15 0.04
Matches are distributed among these distances:
47 38 0.84
48 7 0.16
ACGTcount: A:0.31, C:0.24, G:0.23, T:0.23
Consensus pattern (47 bp):
CAGTACGGCACTCAGTACCTCATCGGATTAACCGAAGTAAACAGTAA
Found at i:22926784 original size:12 final size:11
Alignment explanation
Indices: 22926751--22926784 Score: 50
Period size: 11 Copynumber: 3.0 Consensus size: 11
22926741 TTAAATTTAT
22926751 TATTCAATTTC
1 TATTCAATTTC
22926762 TATTCAATTTC
1 TATTCAATTTC
*
22926773 TACTTTAATTTC
1 TA-TTCAATTTC
22926785 AATTTTAATC
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
11 13 0.62
12 8 0.38
ACGTcount: A:0.26, C:0.18, G:0.00, T:0.56
Consensus pattern (11 bp):
TATTCAATTTC
Found at i:22927154 original size:17 final size:16
Alignment explanation
Indices: 22927132--22927177 Score: 56
Period size: 17 Copynumber: 2.7 Consensus size: 16
22927122 AAATCCCTAA
*
22927132 TTTTTCCTTTTCTTTTC
1 TTTTTCCCTTTC-TTTC
22927149 TTTTTCTCCTTTCTTTC
1 TTTTTC-CCTTTCTTTC
22927166 TTTCTTCCCTTT
1 TTT-TTCCCTTT
22927178 GGCTATTCTG
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
17 18 0.69
18 8 0.31
ACGTcount: A:0.00, C:0.28, G:0.00, T:0.72
Consensus pattern (16 bp):
TTTTTCCCTTTCTTTC
Found at i:22931457 original size:21 final size:20
Alignment explanation
Indices: 22931425--22931465 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 20
22931415 ATTCATGAGT
22931425 ATTTTGATGTTTAATGATAG
1 ATTTTGATGTTTAATGATAG
*
22931445 ATTTTGAATGTTTGATGATAG
1 ATTTTG-ATGTTTAATGATAG
22931466 TTATACAAGT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 6 0.32
21 13 0.68
ACGTcount: A:0.29, C:0.00, G:0.22, T:0.49
Consensus pattern (20 bp):
ATTTTGATGTTTAATGATAG
Found at i:22932059 original size:50 final size:44
Alignment explanation
Indices: 22931952--22932050 Score: 148
Period size: 44 Copynumber: 2.3 Consensus size: 44
22931942 TCAACGATGA
* *
22931952 TTCAGCTA-AT-TATGTGCACTTAGTGTGTGAAATCAAGATAGC
1 TTCAGCTATATATATTTGCACTTAGTGTGCGAAATCAAGATAGC
* *
22931994 TTCAGCTATATATATTTGCACTTAGTGTGCGAGATCGAGATAGC
1 TTCAGCTATATATATTTGCACTTAGTGTGCGAAATCAAGATAGC
22932038 TTCAGCTATATAT
1 TTCAGCTATATAT
22932051 CTGTATATTG
Statistics
Matches: 51, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
42 8 0.16
43 2 0.04
44 41 0.80
ACGTcount: A:0.29, C:0.15, G:0.20, T:0.35
Consensus pattern (44 bp):
TTCAGCTATATATATTTGCACTTAGTGTGCGAAATCAAGATAGC
Found at i:22937568 original size:46 final size:46
Alignment explanation
Indices: 22937424--22937596 Score: 156
Period size: 46 Copynumber: 3.7 Consensus size: 46
22937414 GCATATCTGT
* ** *
22937424 GCCGATGCCATGTCCCAGACATGGTCTTACACT-GAC-ACATCTCTTA-
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTAGCCTACGCCTC-AAG
* * *
22937470 GCTGATGCATGTCCCAGACATGTCTTACACTGGCTTACGCCTCAAG
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGCCTACGCCTCAAG
* * **
22937516 GCCGATGCATCTCCCAGACATGTCTTACACTAGCACT-CGTCTCACT
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGC-CTACGCCTCAAG
* *
22937562 GTCGATGCCATGTCCCAAACATGTCTTACACTAGC
1 GCCGATG-CATGTCCCAGACATGTCTTACACTAGC
22937597 TCACAATAAC
Statistics
Matches: 106, Mismatches: 16, Indels: 9
0.81 0.12 0.07
Matches are distributed among these distances:
44 10 0.09
45 16 0.15
46 54 0.51
47 26 0.25
ACGTcount: A:0.23, C:0.33, G:0.18, T:0.26
Consensus pattern (46 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTAGCCTACGCCTCAAG
Found at i:22937584 original size:93 final size:92
Alignment explanation
Indices: 22937424--22937593 Score: 224
Period size: 93 Copynumber: 1.8 Consensus size: 92
22937414 GCATATCTGT
* * *
22937424 GCCGATGCCATGTCCCAGACATGGTCTTACACTGACACATCTCTTAGCTGATGCATGTCCCAGAC
1 GCCGATGCCATCTCCCAGACATGGTCTTACACTGACACATCTCTCAGCTGATGCATGTCCCAAAC
22937489 ATGTCTTACACTGGCTTACGCCTCAAG
66 ATGTCTTACACTGGCTTACGCCTCAAG
22937516 GCCGATG-CATCTCCCAGACAT-GTCTTACACT-AGCAC-TCGTCTCA-CTGTCGATGCCATGTC
1 GCCGATGCCATCTCCCAGACATGGTCTTACACTGA-CACATC-TCTCAGC--T-GATG-CATGTC
22937576 CCAAACATGTCTTACACT
60 CCAAACATGTCTTACACT
22937594 AGCTCACAAT
Statistics
Matches: 69, Mismatches: 3, Indels: 11
0.83 0.04 0.13
Matches are distributed among these distances:
89 4 0.06
90 17 0.25
91 14 0.20
92 11 0.16
93 23 0.33
ACGTcount: A:0.23, C:0.33, G:0.18, T:0.26
Consensus pattern (92 bp):
GCCGATGCCATCTCCCAGACATGGTCTTACACTGACACATCTCTCAGCTGATGCATGTCCCAAAC
ATGTCTTACACTGGCTTACGCCTCAAG
Found at i:22948786 original size:15 final size:15
Alignment explanation
Indices: 22948748--22948791 Score: 54
Period size: 15 Copynumber: 2.9 Consensus size: 15
22948738 CATAGTATCG
* *
22948748 TATCTTGGGTTTCTT
1 TATCTTGGATTTCTC
22948763 TAT-TCTGGATTTCTC
1 TATCT-TGGATTTCTC
22948778 TATCTTGGATTTCT
1 TATCTTGGATTTCT
22948792 TTATTCGGTT
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
14 1 0.04
15 23 0.92
16 1 0.04
ACGTcount: A:0.11, C:0.16, G:0.16, T:0.57
Consensus pattern (15 bp):
TATCTTGGATTTCTC
Found at i:22950895 original size:100 final size:100
Alignment explanation
Indices: 22950687--22950886 Score: 364
Period size: 100 Copynumber: 2.0 Consensus size: 100
22950677 ACATAAGACT
22950687 AAGGAATAAAGTTTAATTCCCGAGCCTAGGGGCAAAAGTGCAAATATGCAAAAGTTTAGGGGCAA
1 AAGGAATAAAGTTTAATTCCCGAGCCTAGGGGCAAAAGTGCAAATATGCAAAAGTTTAGGGGCAA
22950752 AATTGTAATTTTTCCAAAATATAATTTTGGGTCAA
66 AATTGTAATTTTTCCAAAATATAATTTTGGGTCAA
* * *
22950787 AAGGAATAAAGTTTAATTCCCGAGTCTAGGGGCAAAAGTGTAAATATGCAATAGTTTAGGGGCAA
1 AAGGAATAAAGTTTAATTCCCGAGCCTAGGGGCAAAAGTGCAAATATGCAAAAGTTTAGGGGCAA
*
22950852 AATTGTAATTTTTCCAAAATATGATTTTGGGTCAA
66 AATTGTAATTTTTCCAAAATATAATTTTGGGTCAA
22950887 TTTGAATAAT
Statistics
Matches: 96, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
100 96 1.00
ACGTcount: A:0.38, C:0.11, G:0.21, T:0.29
Consensus pattern (100 bp):
AAGGAATAAAGTTTAATTCCCGAGCCTAGGGGCAAAAGTGCAAATATGCAAAAGTTTAGGGGCAA
AATTGTAATTTTTCCAAAATATAATTTTGGGTCAA
Found at i:22951343 original size:46 final size:46
Alignment explanation
Indices: 22951293--22952103 Score: 1622
Period size: 46 Copynumber: 17.6 Consensus size: 46
22951283 TGGTTTAGCA
22951293 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
22951339 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
22951385 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
22951431 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
22951477 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
22951523 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
22951569 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
22951615 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
22951661 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
22951707 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
22951753 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
22951799 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
22951845 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
22951891 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
22951937 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
22951983 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
22952029 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
22952075 TCCGAACTCGTTGAGTTGAGTCCGAGTTC
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC
22952104 GAGAGATGTA
Statistics
Matches: 765, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
46 765 1.00
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:22955141 original size:15 final size:15
Alignment explanation
Indices: 22955103--22955146 Score: 54
Period size: 15 Copynumber: 2.9 Consensus size: 15
22955093 CATAGTATCG
* *
22955103 TATCTTGGGTTTCTT
1 TATCTTGGATTTCTC
22955118 TAT-TCTGGATTTCTC
1 TATCT-TGGATTTCTC
22955133 TATCTTGGATTTCT
1 TATCTTGGATTTCT
22955147 TTATTCGGTT
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
14 1 0.04
15 23 0.92
16 1 0.04
ACGTcount: A:0.11, C:0.16, G:0.16, T:0.57
Consensus pattern (15 bp):
TATCTTGGATTTCTC
Found at i:22957328 original size:44 final size:44
Alignment explanation
Indices: 22957257--22957343 Score: 147
Period size: 44 Copynumber: 2.0 Consensus size: 44
22957247 AGTGTTGGCA
22957257 AGCCAGCTCGGAAATCGGAAACAGTCGGAGGCACGCTCACACTT
1 AGCCAGCTCGGAAATCGGAAACAGTCGGAGGCACGCTCACACTT
* * *
22957301 AGCCAGCTCGGAAATCGGGAACGGTCGGAGGCTCGCTCACACT
1 AGCCAGCTCGGAAATCGGAAACAGTCGGAGGCACGCTCACACT
22957344 ATCCGTATAC
Statistics
Matches: 40, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
44 40 1.00
ACGTcount: A:0.26, C:0.30, G:0.30, T:0.14
Consensus pattern (44 bp):
AGCCAGCTCGGAAATCGGAAACAGTCGGAGGCACGCTCACACTT
Found at i:22957715 original size:48 final size:48
Alignment explanation
Indices: 22957645--22957739 Score: 172
Period size: 48 Copynumber: 2.0 Consensus size: 48
22957635 GAAGATGAAT
* *
22957645 AATATATGGAATTTAAGAATTATGAGTCTATTTTCATATGGATGGAAG
1 AATATATAGAATTGAAGAATTATGAGTCTATTTTCATATGGATGGAAG
22957693 AATATATAGAATTGAAGAATTATGAGTCTATTTTCATATGGATGGAA
1 AATATATAGAATTGAAGAATTATGAGTCTATTTTCATATGGATGGAA
22957740 CAAAACAGGT
Statistics
Matches: 45, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
48 45 1.00
ACGTcount: A:0.39, C:0.04, G:0.20, T:0.37
Consensus pattern (48 bp):
AATATATAGAATTGAAGAATTATGAGTCTATTTTCATATGGATGGAAG
Found at i:22964750 original size:18 final size:18
Alignment explanation
Indices: 22964724--22964760 Score: 65
Period size: 18 Copynumber: 2.1 Consensus size: 18
22964714 TGAATTCGCT
22964724 TATAATAATAGCTTTCAA
1 TATAATAATAGCTTTCAA
*
22964742 TATACTAATAGCTTTCAA
1 TATAATAATAGCTTTCAA
22964760 T
1 T
22964761 CGAGTATTAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.41, C:0.14, G:0.05, T:0.41
Consensus pattern (18 bp):
TATAATAATAGCTTTCAA
Found at i:22970921 original size:46 final size:44
Alignment explanation
Indices: 22970804--22970925 Score: 156
Period size: 45 Copynumber: 2.7 Consensus size: 44
22970794 TTGAGACGAG
*
22970804 AGCTAGTGTAAGACATGTTTAGGACATGCACTGGCCTCGTGACTA
1 AGCTAGCGTAAGACATGTTTAGGACATGCA-TGGCCTCGTGACTA
* *
22970849 AGCCAGCGTAAGACATGTCTCA-GACATGCATAGGCCTCGTGACGTA
1 AGCTAGCGTAAGACATGT-TTAGGACATGCAT-GGCCTCGTGAC-TA
* *
22970895 AGCTAGGGTAAGACATGTTTGGGACATGCAT
1 AGCTAGCGTAAGACATGTTTAGGACATGCAT
22970926 CGGCTACCAG
Statistics
Matches: 66, Mismatches: 7, Indels: 7
0.82 0.09 0.09
Matches are distributed among these distances:
44 1 0.02
45 36 0.55
46 29 0.44
ACGTcount: A:0.28, C:0.20, G:0.28, T:0.24
Consensus pattern (44 bp):
AGCTAGCGTAAGACATGTTTAGGACATGCATGGCCTCGTGACTA
Found at i:22970966 original size:91 final size:91
Alignment explanation
Indices: 22970756--22970967 Score: 207
Period size: 91 Copynumber: 2.3 Consensus size: 91
22970746 ACATTATGAG
* * * *
22970756 AGCCAGTGTAAGACCATGTCTGGGACATAGCATCGGTATTGAGACGAGAGCTAGTGTAAGACATG
1 AGCCAGTGTAAGA-CATGTCTGGGACAT-GCATAGGCATCGAGACGAGAGCTAGGGTAAGACATG
**
22970821 TTTAGGACATGCACTGGCCTCGTGACTA
64 TTTAGGACATGCACTGGCCTCCAGACTA
* ** * *
22970849 AGCCAGCGTAAGACATGTCTCAGACATGCATAGGCCTCGTGACGTA-AGCTAGGGTAAGACATGT
1 AGCCAGTGTAAGACATGTCTGGGACATGCATAGGCATCGAGACG-AGAGCTAGGGTAAGACATGT
* *
22970913 TTGGGACATGCA-TCGG-CTACCAG-CTG
65 TTAGGACATGCACT-GGCCT-CCAGACTA
* *
22970939 TGTCAGTGTAAGACAATGTCTGGGACATG
1 AGCCAGTGTAAGAC-ATGTCTGGGACATG
22970968 GCATCAACAC
Statistics
Matches: 97, Mismatches: 18, Indels: 10
0.78 0.14 0.08
Matches are distributed among these distances:
90 16 0.16
91 56 0.58
92 13 0.13
93 12 0.12
ACGTcount: A:0.27, C:0.20, G:0.29, T:0.23
Consensus pattern (91 bp):
AGCCAGTGTAAGACATGTCTGGGACATGCATAGGCATCGAGACGAGAGCTAGGGTAAGACATGTT
TAGGACATGCACTGGCCTCCAGACTA
Found at i:22971062 original size:49 final size:49
Alignment explanation
Indices: 22970942--22971118 Score: 186
Period size: 49 Copynumber: 3.6 Consensus size: 49
22970932 CCAGCTGTGT
* * *
22970942 CAGTGTAAGACAATGTCTGGGACATGGCATCAACAC-AGATATGT-GAGAGC
1 CAGTGTAAGACCATGTTTGGGACATGGCATCAAC-CTAGAT-T-TCGATAGC
* * * *
22970992 TAGTGTAAGACCATGTATGGGACATGGCGTCAACCTCGATTTCGATAGC
1 CAGTGTAAGACCATGTTTGGGACATGGCATCAACCTAGATTTCGATAGC
* *
22971041 CAGTGTAAGACCATGTTTGGGACATGGCATCGA-CTTGA--TCGATGAGC
1 CAGTGTAAGACCATGTTTGGGACATGGCATCAACCTAGATTTCGAT-AGC
22971088 CAGTGTAAGACCATGTCTT-GGACATGGCATC
1 CAGTGTAAGACCATGT-TTGGGACATGGCATC
22971119 GACATTATAC
Statistics
Matches: 112, Mismatches: 11, Indels: 11
0.84 0.08 0.08
Matches are distributed among these distances:
46 5 0.04
47 31 0.28
48 7 0.06
49 36 0.32
50 33 0.29
ACGTcount: A:0.28, C:0.20, G:0.28, T:0.24
Consensus pattern (49 bp):
CAGTGTAAGACCATGTTTGGGACATGGCATCAACCTAGATTTCGATAGC
Found at i:22971111 original size:47 final size:47
Alignment explanation
Indices: 22970942--22971121 Score: 168
Period size: 47 Copynumber: 3.7 Consensus size: 47
22970932 CCAGCTGTGT
* * * * *
22970942 CAGTGTAAGACAATGTCTGGGACATGGCATCAACACAGATATGTGA-GAGC
1 CAGTGTAAGACCATGT-TTGGACATGGCATCGACTC-GAT-T-CGATGAGC
* * * *
22970992 TAGTGTAAGACCATGTATGGGACATGGCGTCAACCTCGATTTCGAT-AGC
1 CAGTGTAAGACCATGT-TTGGACATGGCATCGA-CTCGA-TTCGATGAGC
*
22971041 CAGTGTAAGACCATGTTTGGGACATGGCATCGACTTGA-TCGATGAGC
1 CAGTGTAAGACCATGTTT-GGACATGGCATCGACTCGATTCGATGAGC
22971088 CAGTGTAAGACCATGTCTTGGACATGGCATCGAC
1 CAGTGTAAGACCATGT-TTGGACATGGCATCGAC
22971122 ATTATACCCT
Statistics
Matches: 113, Mismatches: 11, Indels: 15
0.81 0.08 0.11
Matches are distributed among these distances:
46 5 0.04
47 34 0.30
48 7 0.06
49 32 0.28
50 32 0.28
51 3 0.03
ACGTcount: A:0.28, C:0.20, G:0.28, T:0.24
Consensus pattern (47 bp):
CAGTGTAAGACCATGTTTGGACATGGCATCGACTCGATTCGATGAGC
Found at i:22978193 original size:40 final size:40
Alignment explanation
Indices: 22978124--22978229 Score: 117
Period size: 40 Copynumber: 2.7 Consensus size: 40
22978114 TACCAGCTCG
* * * **
22978124 TAGCCTGCGGGTCTCT-AGCCCAGATAACATTGTAGCACGA
1 TAGCCTGCGAGTCTTTAAGCCCGGATAACATTCCAGCA-GA
* *
22978164 -AGCCTGCGAGTCTTTAAGCCGGGATAACATTCCAGCATA
1 TAGCCTGCGAGTCTTTAAGCCCGGATAACATTCCAGCAGA
*
22978203 TAGCCTGCGGGTCTTTAAGCCCGGATA
1 TAGCCTGCGAGTCTTTAAGCCCGGATA
22978230 CAATTCCTCA
Statistics
Matches: 55, Mismatches: 9, Indels: 4
0.81 0.13 0.06
Matches are distributed among these distances:
39 14 0.25
40 41 0.75
ACGTcount: A:0.25, C:0.26, G:0.25, T:0.24
Consensus pattern (40 bp):
TAGCCTGCGAGTCTTTAAGCCCGGATAACATTCCAGCAGA
Found at i:22988745 original size:26 final size:26
Alignment explanation
Indices: 22988715--22988766 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
22988705 CATATGGCCG
*
22988715 GATGAACCTCGGACTCAATTTTCCCT
1 GATGAACCTCGGACTCAATTTGCCCT
22988741 GATGAACCTCGGACTCAATTTGCCCT
1 GATGAACCTCGGACTCAATTTGCCCT
22988767 TACGGCCAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.23, C:0.31, G:0.17, T:0.29
Consensus pattern (26 bp):
GATGAACCTCGGACTCAATTTGCCCT
Found at i:22994121 original size:40 final size:39
Alignment explanation
Indices: 22994044--22994149 Score: 142
Period size: 40 Copynumber: 2.7 Consensus size: 39
22994034 TACCAGCTCG
* *
22994044 TAGCCTGCGGGTCTCTAGCCCGGATAACATTCTAGCATGA
1 TAGCCTGCGGGTCTTTAGCCCGGATAACATTCCAGCAT-A
*
22994084 -AGCCTGCGGGTCTTTACGCCCGGATAACTTTCCAGCATA
1 TAGCCTGCGGGTCTTTA-GCCCGGATAACATTCCAGCATA
*
22994123 TAGCCTACGGGTCTTTAAGCCCGGATA
1 TAGCCTGCGGGTCTTT-AGCCCGGATA
22994150 CAATTCCTCA
Statistics
Matches: 59, Mismatches: 4, Indels: 6
0.86 0.06 0.09
Matches are distributed among these distances:
39 16 0.27
40 42 0.71
41 1 0.02
ACGTcount: A:0.22, C:0.28, G:0.25, T:0.25
Consensus pattern (39 bp):
TAGCCTGCGGGTCTTTAGCCCGGATAACATTCCAGCATA
Found at i:22998436 original size:15 final size:15
Alignment explanation
Indices: 22998410--22998465 Score: 87
Period size: 15 Copynumber: 3.7 Consensus size: 15
22998400 CAAGGAAACC
22998410 GAATAAAGAAATCCA
1 GAATAAAGAAATCCA
*
22998425 -AGATAGAGAAATCCA
1 GA-ATAAAGAAATCCA
22998440 GAATAAAGAAATCCA
1 GAATAAAGAAATCCA
22998455 GAATAAAGAAA
1 GAATAAAGAAA
22998466 CCCAAGATAC
Statistics
Matches: 37, Mismatches: 2, Indels: 4
0.86 0.05 0.09
Matches are distributed among these distances:
14 1 0.03
15 35 0.95
16 1 0.03
ACGTcount: A:0.61, C:0.11, G:0.16, T:0.12
Consensus pattern (15 bp):
GAATAAAGAAATCCA
Found at i:23001462 original size:46 final size:46
Alignment explanation
Indices: 23001395--23001707 Score: 563
Period size: 46 Copynumber: 6.8 Consensus size: 46
23001385 TGTAACCTGC
*
23001395 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
23001441 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
23001487 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
23001533 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
23001579 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *** *
23001625 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGTGTTTGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
23001671 CCATAAGTGAACTCGGACTTAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
23001708 TGCTCAACCA
Statistics
Matches: 258, Mismatches: 9, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
46 258 1.00
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:23004562 original size:39 final size:39
Alignment explanation
Indices: 23004465--23004844 Score: 445
Period size: 39 Copynumber: 9.9 Consensus size: 39
23004455 AAGATGTTTT
* * * *
23004465 GAGTATTGTGATATATGCTTAAGTATTAAGAGATTAT--
1 GAGTATTGTGATATATGCTTAAATGTTATGTGATTATAC
*
23004502 -A--A-TGTGATATATGCTTGAATGTTATGTGATTATAC
1 GAGTATTGTGATATATGCTTAAATGTTATGTGATTATAC
* * * *
23004537 GAGTATTGTGATATATGCTTAAATGTTGTGAGATGATAT
1 GAGTATTGTGATATATGCTTAAATGTTATGTGATTATAC
*
23004576 GTA-TATTGTGATATATGCTTGAATGTTATGTGATTATAC
1 G-AGTATTGTGATATATGCTTAAATGTTATGTGATTATAC
* * * *
23004615 GAGTATTGTGATATATGCTTAAATGTTGTGAGATGATAT
1 GAGTATTGTGATATATGCTTAAATGTTATGTGATTATAC
*
23004654 GTA-TATTGTGATATATGCTTGAATGTTATGTGATTATAC
1 G-AGTATTGTGATATATGCTTAAATGTTATGTGATTATAC
* * * *
23004693 GAGTATTGTGATATATGCTTAAATGTTGTGAGATGATAT
1 GAGTATTGTGATATATGCTTAAATGTTATGTGATTATAC
*
23004732 GTA-TATTGTGATATATGCTTGAATGTTATGTGATTATAC
1 G-AGTATTGTGATATATGCTTAAATGTTATGTGATTATAC
* *
23004771 GAGTATTGTGATATACGCTTAAATGTTATGTGATTATAT
1 GAGTATTGTGATATATGCTTAAATGTTATGTGATTATAC
** *
23004810 GAGTATTGTGATATATGCTTGGATGTTAGGTGATT
1 GAGTATTGTGATATATGCTTAAATGTTATGTGATT
23004845 GTATGTGTAA
Statistics
Matches: 289, Mismatches: 42, Indels: 22
0.82 0.12 0.06
Matches are distributed among these distances:
33 26 0.09
34 1 0.00
36 2 0.01
38 4 0.01
39 253 0.88
40 3 0.01
ACGTcount: A:0.30, C:0.04, G:0.23, T:0.43
Consensus pattern (39 bp):
GAGTATTGTGATATATGCTTAAATGTTATGTGATTATAC
Found at i:23004871 original size:78 final size:78
Alignment explanation
Indices: 23004465--23004844 Score: 614
Period size: 78 Copynumber: 4.9 Consensus size: 78
23004455 AAGATGTTTT
* *
23004465 GAGTATTGTGATATATGCTT-AA-GTAT-T-A-A-GAGAT-TATAATGTGATATATGCTTGAATG
1 GAGTATTGTGATATATGCTTAAATGT-TGTGAGATGATATGTATATTGTGATATATGCTTGAATG
23004523 TTATGTGATTATAC
65 TTATGTGATTATAC
23004537 GAGTATTGTGATATATGCTTAAATGTTGTGAGATGATATGTATATTGTGATATATGCTTGAATGT
1 GAGTATTGTGATATATGCTTAAATGTTGTGAGATGATATGTATATTGTGATATATGCTTGAATGT
23004602 TATGTGATTATAC
66 TATGTGATTATAC
23004615 GAGTATTGTGATATATGCTTAAATGTTGTGAGATGATATGTATATTGTGATATATGCTTGAATGT
1 GAGTATTGTGATATATGCTTAAATGTTGTGAGATGATATGTATATTGTGATATATGCTTGAATGT
23004680 TATGTGATTATAC
66 TATGTGATTATAC
23004693 GAGTATTGTGATATATGCTTAAATGTTGTGAGATGATATGTATATTGTGATATATGCTTGAATGT
1 GAGTATTGTGATATATGCTTAAATGTTGTGAGATGATATGTATATTGTGATATATGCTTGAATGT
23004758 TATGTGATTATAC
66 TATGTGATTATAC
* * * * *
23004771 GAGTATTGTGATATACGCTTAAATGTTATGTGATTATATG-AGTATTGTGATATATGCTTGGATG
1 GAGTATTGTGATATATGCTTAAATGTTGTGAGATGATATGTA-TATTGTGATATATGCTTGAATG
*
23004835 TTAGGTGATT
65 TTATGTGATT
23004845 GTATGTGTAA
Statistics
Matches: 292, Mismatches: 8, Indels: 10
0.94 0.03 0.03
Matches are distributed among these distances:
72 20 0.07
73 3 0.01
74 3 0.01
75 1 0.00
76 1 0.00
77 5 0.02
78 259 0.89
ACGTcount: A:0.30, C:0.04, G:0.23, T:0.43
Consensus pattern (78 bp):
GAGTATTGTGATATATGCTTAAATGTTGTGAGATGATATGTATATTGTGATATATGCTTGAATGT
TATGTGATTATAC
Found at i:23009157 original size:40 final size:41
Alignment explanation
Indices: 23009108--23009220 Score: 113
Period size: 41 Copynumber: 2.8 Consensus size: 41
23009098 CAGCTGTATA
* *
23009108 TGGCACTTAGTGTGCGA-TTCGAAATAGCTTCGACTATATG
1 TGGCACTTAGAGTGCGAGATCGAAATAGCTTCGACTATATG
* * *
23009148 TGGCACTTAGAGTGCGAGATCGAGATAGCTTCGGCTATGA-A
1 TGGCACTTAGAGTGCGAGATCGAAATAGCTTCGACTAT-ATG
* * * **
23009189 AGCCACTTAGTGTGCGAGATTAAAATAGCTTC
1 TGGCACTTAGAGTGCGAGATCGAAATAGCTTC
23009221 AGCTATGAAA
Statistics
Matches: 60, Mismatches: 11, Indels: 3
0.81 0.15 0.04
Matches are distributed among these distances:
40 16 0.27
41 43 0.72
42 1 0.02
ACGTcount: A:0.27, C:0.18, G:0.27, T:0.28
Consensus pattern (41 bp):
TGGCACTTAGAGTGCGAGATCGAAATAGCTTCGACTATATG
Found at i:23009196 original size:41 final size:41
Alignment explanation
Indices: 23009151--23009290 Score: 165
Period size: 41 Copynumber: 3.4 Consensus size: 41
23009141 CTATATGTGG
* ** *
23009151 CACTTAGAGTGCGAGATCGAGATAGCTTCGGCTATGAAAGC
1 CACTTAGTGTGCGAGATTAAAATAGCTTCGGCTATGAAAGC
* *
23009192 CACTTAGTGTGCGAGATTAAAATAGCTTCAGCTATGAAAGG
1 CACTTAGTGTGCGAGATTAAAATAGCTTCGGCTATGAAAGC
* * **
23009233 TACTTAGTGTGTGAGATTAAAATAGCTTCGGCTATGTTTTAG-
1 CACTTAGTGTGCGAGATTAAAATAGCTTCGGCTATG--AAAGC
23009275 CACTTAGTGTGCGAGA
1 CACTTAGTGTGCGAGA
23009291 ATTCAAGTAT
Statistics
Matches: 84, Mismatches: 13, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
41 68 0.81
42 14 0.17
43 2 0.02
ACGTcount: A:0.29, C:0.15, G:0.26, T:0.29
Consensus pattern (41 bp):
CACTTAGTGTGCGAGATTAAAATAGCTTCGGCTATGAAAGC
Found at i:23024104 original size:38 final size:38
Alignment explanation
Indices: 23024009--23024114 Score: 131
Period size: 38 Copynumber: 2.8 Consensus size: 38
23023999 CTTAAAGACT
** * **
23024009 CGCAGGCTTCGTGCTGGTAAAATATCCGGGTTAAATTT
1 CGCAGGCTTCGTGCTGGTATTATATCCGGGATAAATCC
*
23024047 CGCAGGCTTCCTGCTGGTATTATATCCGGGATAAATCC
1 CGCAGGCTTCGTGCTGGTATTATATCCGGGATAAATCC
* * *
23024085 CGCAGGCCTAGTGCTGGTATTATATTCGGG
1 CGCAGGCTTCGTGCTGGTATTATATCCGGG
23024115 CCTTCGTGCC
Statistics
Matches: 58, Mismatches: 10, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
38 58 1.00
ACGTcount: A:0.21, C:0.22, G:0.27, T:0.30
Consensus pattern (38 bp):
CGCAGGCTTCGTGCTGGTATTATATCCGGGATAAATCC
Found at i:23025196 original size:44 final size:44
Alignment explanation
Indices: 23025146--23025234 Score: 178
Period size: 44 Copynumber: 2.0 Consensus size: 44
23025136 GTATAGGGTT
23025146 TTAATGTTTTGGACCTCGTAAGCTCATATATGGGATAGATTGCA
1 TTAATGTTTTGGACCTCGTAAGCTCATATATGGGATAGATTGCA
23025190 TTAATGTTTTGGACCTCGTAAGCTCATATATGGGATAGATTGCA
1 TTAATGTTTTGGACCTCGTAAGCTCATATATGGGATAGATTGCA
23025234 T
1 T
23025235 GTGAAAAGAA
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
44 45 1.00
ACGTcount: A:0.27, C:0.13, G:0.22, T:0.37
Consensus pattern (44 bp):
TTAATGTTTTGGACCTCGTAAGCTCATATATGGGATAGATTGCA
Found at i:23035282 original size:38 final size:38
Alignment explanation
Indices: 23035218--23035292 Score: 107
Period size: 38 Copynumber: 2.0 Consensus size: 38
23035208 AATCCTAGTT
*
23035218 TAAAGACCCGTTGACTATATGAAGAGATTATGTCCGGG
1 TAAAGACCCGATGACTATATGAAGAGATTATGTCCGGG
* *
23035256 TAAAGACCCGATGGCTATGT-ACAGAGATTATGTCCGG
1 TAAAGACCCGATGACTATATGA-AGAGATTATGTCCGG
23035293 ATTAAAATTC
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
37 1 0.03
38 32 0.97
ACGTcount: A:0.31, C:0.17, G:0.27, T:0.25
Consensus pattern (38 bp):
TAAAGACCCGATGACTATATGAAGAGATTATGTCCGGG
Found at i:23035405 original size:40 final size:40
Alignment explanation
Indices: 23035346--23035967 Score: 1120
Period size: 40 Copynumber: 15.6 Consensus size: 40
23035336 AGGTCTCGAC
* *
23035346 GATG-ATCCGGGCTAAGTCCCAAAGAGCATTCGTGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTTGTGCTAGT
23035385 GATGTATCCGGGCTAAGTCCCGAAGAGCATTTGTGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTTGTGCTAGT
23035425 GATGTATCCGGGCTAAGTCCCGAAGAGCATTTGTGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTTGTGCTAGT
23035465 GATGTATCCGGGCTAAGTCCCGAAGAGCATTTGTGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTTGTGCTAGT
23035505 GATGTATCCGGGCTAAGTCCCGAAGAGCATTTGTGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTTGTGCTAGT
23035545 GATGTATCCGGGCTAAGTCCCGAAGAGCATTTGTGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTTGTGCTAGT
23035585 GATGTATCCGGGCTAAGTCCCGAAGAGCATTTGTGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTTGTGCTAGT
23035625 GATGTATCCGGGCTAAGTCCCGAAGAGCATTTGTGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTTGTGCTAGT
23035665 GATGTATCCGGGCTAAGTCCCGAAGAGCATTTGTGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTTGTGCTAGT
23035705 GATGTATCCGGGCTAAGTCCCGAAGAGCATTTGTGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTTGTGCTAGT
23035745 GATGTATCCGGGCTAAGTCCCGAAGAGCATTTGTGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTTGTGCTAGT
23035785 GATGTATCCGGGCTAAGTCCCGAAGAGCATTTGTGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTTGTGCTAGT
**
23035825 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTTGTGCTAGT
* * *
23035865 GATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTTGTGCTAGT
* * *
23035905 GATATATCCGGGCTAAATCCCGAAGAGCATTCGTGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTTGTGCTAGT
* * *
23035945 GTTGTATCCGGACTAAGTTCCGA
1 GATGTATCCGGGCTAAGTCCCGA
23035968 CCGGACTAAG
Statistics
Matches: 566, Mismatches: 16, Indels: 1
0.97 0.03 0.00
Matches are distributed among these distances:
39 4 0.01
40 562 0.99
ACGTcount: A:0.23, C:0.21, G:0.29, T:0.27
Consensus pattern (40 bp):
GATGTATCCGGGCTAAGTCCCGAAGAGCATTTGTGCTAGT
Found at i:23036036 original size:40 final size:40
Alignment explanation
Indices: 23035981--23036056 Score: 125
Period size: 40 Copynumber: 1.9 Consensus size: 40
23035971 GACTAAGTTT
*
23035981 CGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAATCC
1 CGAAGAGCATTCGTGCTAGTGATATATCCGGACTAAATCC
* *
23036021 CGAAGAGCATTCGTGCTAGTGTTGTATCCGGACTAA
1 CGAAGAGCATTCGTGCTAGTGATATATCCGGACTAA
23036057 GTTCCGACCG
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
40 33 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (40 bp):
CGAAGAGCATTCGTGCTAGTGATATATCCGGACTAAATCC
Found at i:23036036 original size:96 final size:96
Alignment explanation
Indices: 23035872--23036831 Score: 1893
Period size: 96 Copynumber: 10.0 Consensus size: 96
23035862 AGTGATGTAT
*
23035872 CCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAATCCCGAAGAGCATTC
1 CCGGACTAAGTTTCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAATCCCGAAGAGCATTC
23035937 GTGCTAGTGTTGTATCCGGACTAAGTTCCGA
66 GTGCTAGTGTTGTATCCGGACTAAGTTCCGA
23035968 CCGGACTAAGTTTCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAATCCCGAAGAGCATTC
1 CCGGACTAAGTTTCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAATCCCGAAGAGCATTC
23036033 GTGCTAGTGTTGTATCCGGACTAAGTTCCGA
66 GTGCTAGTGTTGTATCCGGACTAAGTTCCGA
23036064 CCGGACTAAGTTTCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAATCCCGAAGAGCATTC
1 CCGGACTAAGTTTCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAATCCCGAAGAGCATTC
23036129 GTGCTAGTGTTGTATCCGGACTAAGTTCCGA
66 GTGCTAGTGTTGTATCCGGACTAAGTTCCGA
23036160 CCGGACTAAGTTTCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAATCCCGAAGAGCATTC
1 CCGGACTAAGTTTCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAATCCCGAAGAGCATTC
23036225 GTGCTAGTGTTGTATCCGGACTAAGTTCCGA
66 GTGCTAGTGTTGTATCCGGACTAAGTTCCGA
23036256 CCGGACTAAGTTTCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAATCCCGAAGAGCATTC
1 CCGGACTAAGTTTCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAATCCCGAAGAGCATTC
23036321 GTGCTAGTGTTGTATCCGGACTAAGTTCCGA
66 GTGCTAGTGTTGTATCCGGACTAAGTTCCGA
23036352 CCGGACTAAGTTTCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAATCCCGAAGAGCATTC
1 CCGGACTAAGTTTCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAATCCCGAAGAGCATTC
23036417 GTGCTAGTGTTGTATCCGGACTAAGTTCCGA
66 GTGCTAGTGTTGTATCCGGACTAAGTTCCGA
23036448 CCGGACTAAGTTTCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAATCCCGAAGAGCATTC
1 CCGGACTAAGTTTCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAATCCCGAAGAGCATTC
23036513 GTGCTAGTGTTGTATCCGGACTAAGTTCCGA
66 GTGCTAGTGTTGTATCCGGACTAAGTTCCGA
23036544 CCGGACTAAGTTTCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAATCCCGAAGAGCATTC
1 CCGGACTAAGTTTCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAATCCCGAAGAGCATTC
23036609 GTGCTAGTGTTGTATCCGGACTAAGTTCCGA
66 GTGCTAGTGTTGTATCCGGACTAAGTTCCGA
23036640 CCGGACTAAGTTTCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAATCCCGAAGAGCATTC
1 CCGGACTAAGTTTCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAATCCCGAAGAGCATTC
23036705 GTGCTAGTGTTGTATCCGGACTAAGTTCCGA
66 GTGCTAGTGTTGTATCCGGACTAAGTTCCGA
*
23036736 CCGGACTAAGTTTCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAATCCCAAAGAGCATTC
1 CCGGACTAAGTTTCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAATCCCGAAGAGCATTC
*
23036801 GTGCTAGTGATGTATCCGGACTAAGTTCCGA
66 GTGCTAGTGTTGTATCCGGACTAAGTTCCGA
23036832 AGAGCATTCG
Statistics
Matches: 861, Mismatches: 3, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
96 861 1.00
ACGTcount: A:0.25, C:0.22, G:0.26, T:0.27
Consensus pattern (96 bp):
CCGGACTAAGTTTCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAATCCCGAAGAGCATTC
GTGCTAGTGTTGTATCCGGACTAAGTTCCGA
Found at i:23036132 original size:40 final size:40
Alignment explanation
Indices: 23036077--23036152 Score: 125
Period size: 40 Copynumber: 1.9 Consensus size: 40
23036067 GACTAAGTTT
*
23036077 CGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAATCC
1 CGAAGAGCATTCGTGCTAGTGATATATCCGGACTAAATCC
* *
23036117 CGAAGAGCATTCGTGCTAGTGTTGTATCCGGACTAA
1 CGAAGAGCATTCGTGCTAGTGATATATCCGGACTAA
23036153 GTTCCGACCG
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
40 33 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (40 bp):
CGAAGAGCATTCGTGCTAGTGATATATCCGGACTAAATCC
Found at i:23036228 original size:40 final size:40
Alignment explanation
Indices: 23036173--23036248 Score: 125
Period size: 40 Copynumber: 1.9 Consensus size: 40
23036163 GACTAAGTTT
*
23036173 CGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAATCC
1 CGAAGAGCATTCGTGCTAGTGATATATCCGGACTAAATCC
* *
23036213 CGAAGAGCATTCGTGCTAGTGTTGTATCCGGACTAA
1 CGAAGAGCATTCGTGCTAGTGATATATCCGGACTAA
23036249 GTTCCGACCG
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
40 33 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (40 bp):
CGAAGAGCATTCGTGCTAGTGATATATCCGGACTAAATCC
Found at i:23036324 original size:40 final size:40
Alignment explanation
Indices: 23036269--23036344 Score: 125
Period size: 40 Copynumber: 1.9 Consensus size: 40
23036259 GACTAAGTTT
*
23036269 CGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAATCC
1 CGAAGAGCATTCGTGCTAGTGATATATCCGGACTAAATCC
* *
23036309 CGAAGAGCATTCGTGCTAGTGTTGTATCCGGACTAA
1 CGAAGAGCATTCGTGCTAGTGATATATCCGGACTAA
23036345 GTTCCGACCG
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
40 33 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (40 bp):
CGAAGAGCATTCGTGCTAGTGATATATCCGGACTAAATCC
Found at i:23036420 original size:40 final size:40
Alignment explanation
Indices: 23036365--23036440 Score: 125
Period size: 40 Copynumber: 1.9 Consensus size: 40
23036355 GACTAAGTTT
*
23036365 CGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAATCC
1 CGAAGAGCATTCGTGCTAGTGATATATCCGGACTAAATCC
* *
23036405 CGAAGAGCATTCGTGCTAGTGTTGTATCCGGACTAA
1 CGAAGAGCATTCGTGCTAGTGATATATCCGGACTAA
23036441 GTTCCGACCG
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
40 33 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (40 bp):
CGAAGAGCATTCGTGCTAGTGATATATCCGGACTAAATCC
Found at i:23036516 original size:40 final size:40
Alignment explanation
Indices: 23036461--23036536 Score: 125
Period size: 40 Copynumber: 1.9 Consensus size: 40
23036451 GACTAAGTTT
*
23036461 CGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAATCC
1 CGAAGAGCATTCGTGCTAGTGATATATCCGGACTAAATCC
* *
23036501 CGAAGAGCATTCGTGCTAGTGTTGTATCCGGACTAA
1 CGAAGAGCATTCGTGCTAGTGATATATCCGGACTAA
23036537 GTTCCGACCG
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
40 33 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (40 bp):
CGAAGAGCATTCGTGCTAGTGATATATCCGGACTAAATCC
Found at i:23036612 original size:40 final size:40
Alignment explanation
Indices: 23036557--23036632 Score: 125
Period size: 40 Copynumber: 1.9 Consensus size: 40
23036547 GACTAAGTTT
*
23036557 CGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAATCC
1 CGAAGAGCATTCGTGCTAGTGATATATCCGGACTAAATCC
* *
23036597 CGAAGAGCATTCGTGCTAGTGTTGTATCCGGACTAA
1 CGAAGAGCATTCGTGCTAGTGATATATCCGGACTAA
23036633 GTTCCGACCG
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
40 33 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (40 bp):
CGAAGAGCATTCGTGCTAGTGATATATCCGGACTAAATCC
Found at i:23036708 original size:40 final size:40
Alignment explanation
Indices: 23036653--23036728 Score: 125
Period size: 40 Copynumber: 1.9 Consensus size: 40
23036643 GACTAAGTTT
*
23036653 CGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAATCC
1 CGAAGAGCATTCGTGCTAGTGATATATCCGGACTAAATCC
* *
23036693 CGAAGAGCATTCGTGCTAGTGTTGTATCCGGACTAA
1 CGAAGAGCATTCGTGCTAGTGATATATCCGGACTAA
23036729 GTTCCGACCG
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
40 33 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (40 bp):
CGAAGAGCATTCGTGCTAGTGATATATCCGGACTAAATCC
Found at i:23036806 original size:40 final size:40
Alignment explanation
Indices: 23036751--23036863 Score: 163
Period size: 40 Copynumber: 2.8 Consensus size: 40
23036741 CTAAGTTTCG
23036751 AAGAGCATTCGTGCTAGTGATATATCCGGGCTAAATCCCA
1 AAGAGCATTCGTGCTAGTGATATATCCGGGCTAAATCCCA
* * * * *
23036791 AAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTTCCG
1 AAGAGCATTCGTGCTAGTGATATATCCGGGCTAAATCCCA
* *
23036831 AAGAGCATTCGTGCTGGTGTTATATCCGGGCTA
1 AAGAGCATTCGTGCTAGTGATATATCCGGGCTA
23036864 GGTCCTGAAG
Statistics
Matches: 64, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
40 64 1.00
ACGTcount: A:0.26, C:0.20, G:0.27, T:0.27
Consensus pattern (40 bp):
AAGAGCATTCGTGCTAGTGATATATCCGGGCTAAATCCCA
Found at i:23036889 original size:40 final size:39
Alignment explanation
Indices: 23036749--23036877 Score: 159
Period size: 40 Copynumber: 3.2 Consensus size: 39
23036739 GACTAAGTTT
*
23036749 CGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAATCC
1 CGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAGAT-C
* * * *
23036789 CAAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTTC
1 CGAAGAGCATTCGTGCTAGTGATATATCCGGGCT-AGATC
* * *
23036829 CGAAGAGCATTCGTGCTGGTGTTATATCCGGGCTAGGTC
1 CGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAGATC
23036868 CTGAAGAGCA
1 C-GAAGAGCA
23036878 ATCATGCTGG
Statistics
Matches: 76, Mismatches: 11, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
39 5 0.07
40 69 0.91
41 2 0.03
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.26
Consensus pattern (39 bp):
CGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAGATC
Found at i:23045973 original size:30 final size:29
Alignment explanation
Indices: 23045925--23045985 Score: 104
Period size: 30 Copynumber: 2.1 Consensus size: 29
23045915 CAAGTAGCCG
*
23045925 AAGCTAGTTAAATTGCACACTTAGTGCCA
1 AAGCTAGTTAAATCGCACACTTAGTGCCA
23045954 AAGCTAGTTTAAATCGCACACTTAGTGCCA
1 AAGCTAG-TTAAATCGCACACTTAGTGCCA
23045984 AA
1 AA
23045986 ACTTCCGTTT
Statistics
Matches: 30, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
29 7 0.23
30 23 0.77
ACGTcount: A:0.36, C:0.21, G:0.16, T:0.26
Consensus pattern (29 bp):
AAGCTAGTTAAATCGCACACTTAGTGCCA
Found at i:23050413 original size:46 final size:44
Alignment explanation
Indices: 23050352--23050528 Score: 176
Period size: 46 Copynumber: 3.9 Consensus size: 44
23050342 ATATTTGGGC
*
23050352 ATCCGAACTCTTTGAGTTGAGTCCGAGTTCACTTATGGATGCGA
1 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGA
* *** * *
23050396 ATGTCTGAACTCGTTGAGTTGAGTCCGAGTTCGAGAAATGTAACTAG-GC
1 A--TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGA
*
23050445 ATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA
1 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCG-A
* * *
23050490 CACCCGAGCTCGTTGAGTTGTGTCCGAGTTCACTTATGG
1 -ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
23050529 GTGGGTTACA
Statistics
Matches: 108, Mismatches: 16, Indels: 16
0.77 0.11 0.11
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 1 0.01
46 67 0.62
47 31 0.29
48 1 0.01
49 3 0.03
50 1 0.01
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.30
Consensus pattern (44 bp):
ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGA
Found at i:23050508 original size:93 final size:93
Alignment explanation
Indices: 23050349--23050520 Score: 272
Period size: 93 Copynumber: 1.8 Consensus size: 93
23050339 AGGATATTTG
* *** *
23050349 GGCATCCGAACTCTTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCTGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACACCCGAACTCGTTGAG
23050414 TTGAGTCCGAGTTCGAGAAATGTAACTA
66 TTGAGTCCGAGTTCGAGAAATGTAACTA
* *
23050442 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACACCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACACCCGAACTCGTTGAG
*
23050507 TTGTGTCCGAGTTC
66 TTGAGTCCGAGTTC
23050521 ACTTATGGGT
Statistics
Matches: 71, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.29
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACACCCGAACTCGTTGAG
TTGAGTCCGAGTTCGAGAAATGTAACTA
Found at i:23050659 original size:21 final size:21
Alignment explanation
Indices: 23050634--23050677 Score: 88
Period size: 21 Copynumber: 2.1 Consensus size: 21
23050624 CTACTCAAAT
23050634 GGAGGAATACTCGAGATGAAA
1 GGAGGAATACTCGAGATGAAA
23050655 GGAGGAATACTCGAGATGAAA
1 GGAGGAATACTCGAGATGAAA
23050676 GG
1 GG
23050678 GACATATTGG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.41, C:0.09, G:0.36, T:0.14
Consensus pattern (21 bp):
GGAGGAATACTCGAGATGAAA
Found at i:23054354 original size:22 final size:22
Alignment explanation
Indices: 23054296--23054493 Score: 111
Period size: 23 Copynumber: 8.7 Consensus size: 22
23054286 TCTGAGCTGA
* *
23054296 TGAACAGTAACCTCTATTGAAC
1 TGAACAGTAAGCTCTATTGAGC
*
23054318 TGAAACGGTAAGCTCTATTGAGC
1 TG-AACAGTAAGCTCTATTGAGC
*
23054341 TGAACAATAAGCTCT-TTCGAGC
1 TGAACAGTAAGCTCTATT-GAGC
* *
23054363 TGAATCGGTAAGCTCCAATT-AGC
1 TGAA-CAGTAAGCT-CTATTGAGC
*
23054386 T-AAAATGGTAAGCT-T-TTACGAGC
1 TGAACA--GTAAGCTCTATT--GAGC
* *
23054409 TGAATCAGTAAGCTCCAATGAGC
1 TGAA-CAGTAAGCTCTATTGAGC
**
23054432 TGAAACAGTAAGCTCT-TACAAGC
1 TG-AACAGTAAGCTCTAT-TGAGC
* *
23054455 TGAATCAGTAAGCTCCAATGAGC
1 TGAA-CAGTAAGCTCTATTGAGC
*
23054478 TAAAACAGTAAGCTCT
1 T-GAACAGTAAGCTCT
23054494 TACGAGCTGT
Statistics
Matches: 133, Mismatches: 24, Indels: 37
0.69 0.12 0.19
Matches are distributed among these distances:
20 2 0.02
21 2 0.02
22 25 0.19
23 93 0.70
24 7 0.05
25 4 0.03
ACGTcount: A:0.35, C:0.20, G:0.20, T:0.25
Consensus pattern (22 bp):
TGAACAGTAAGCTCTATTGAGC
Found at i:23054411 original size:46 final size:46
Alignment explanation
Indices: 23054325--23054502 Score: 241
Period size: 46 Copynumber: 3.9 Consensus size: 46
23054315 AACTGAAACG
* * * * * *
23054325 GTAAGCTCTATTGAGCT-GAACAATAAGCTCTTTCGAGCTGAATCG
1 GTAAGCTCCAATGAGCTAAAACAGTAAGCTCTTACGAGCTGAATCA
* ** *
23054370 GTAAGCTCCAATTAGCTAAAATGGTAAGCTTTTACGAGCTGAATCA
1 GTAAGCTCCAATGAGCTAAAACAGTAAGCTCTTACGAGCTGAATCA
* *
23054416 GTAAGCTCCAATGAGCTGAAACAGTAAGCTCTTACAAGCTGAATCA
1 GTAAGCTCCAATGAGCTAAAACAGTAAGCTCTTACGAGCTGAATCA
23054462 GTAAGCTCCAATGAGCTAAAACAGTAAGCTCTTACGAGCTG
1 GTAAGCTCCAATGAGCTAAAACAGTAAGCTCTTACGAGCTG
23054503 TGGTGAGTCC
Statistics
Matches: 114, Mismatches: 18, Indels: 1
0.86 0.14 0.01
Matches are distributed among these distances:
45 14 0.12
46 100 0.88
ACGTcount: A:0.34, C:0.20, G:0.21, T:0.25
Consensus pattern (46 bp):
GTAAGCTCCAATGAGCTAAAACAGTAAGCTCTTACGAGCTGAATCA
Found at i:23054500 original size:23 final size:23
Alignment explanation
Indices: 23054317--23054502 Score: 133
Period size: 23 Copynumber: 8.1 Consensus size: 23
23054307 CTCTATTGAA
* *
23054317 CTGAAACGGTAAGCTC-TATTGAG
1 CTGAAACAGTAAGCTCTTA-CGAG
* *
23054340 CTG-AACAATAAGCTCTTTCGAG
1 CTGAAACAGTAAGCTCTTACGAG
* * ** **
23054362 CTGAATCGGTAAGCTCCAATTAG
1 CTGAAACAGTAAGCTCTTACGAG
* ** *
23054385 CTAAAATGGTAAGCTTTTACGAG
1 CTGAAACAGTAAGCTCTTACGAG
* ** *
23054408 CTGAATCAGTAAGCTCCAATGAG
1 CTGAAACAGTAAGCTCTTACGAG
*
23054431 CTGAAACAGTAAGCTCTTACAAG
1 CTGAAACAGTAAGCTCTTACGAG
* ** *
23054454 CTGAATCAGTAAGCTCCAATGAG
1 CTGAAACAGTAAGCTCTTACGAG
*
23054477 CTAAAACAGTAAGCTCTTACGAG
1 CTGAAACAGTAAGCTCTTACGAG
23054500 CTG
1 CTG
23054503 TGGTGAGTCC
Statistics
Matches: 117, Mismatches: 44, Indels: 4
0.71 0.27 0.02
Matches are distributed among these distances:
22 16 0.14
23 101 0.86
ACGTcount: A:0.34, C:0.20, G:0.21, T:0.25
Consensus pattern (23 bp):
CTGAAACAGTAAGCTCTTACGAG
Found at i:23056756 original size:46 final size:46
Alignment explanation
Indices: 23056694--23056874 Score: 163
Period size: 46 Copynumber: 3.9 Consensus size: 46
23056684 CACTGACACA
* *
23056694 TCTCGTGGTTGATGCATGTCCCAGACACGTCTTACACTAGCT-TACG
1 TCTCGAGGTCGATGCATGTCCCAGACACGTCTTACACTAGCTCTA-G
* *
23056740 TCTCGAGGTCGATGCATGTCCCAGACATGTCTTACACTGGCTCTAG
1 TCTCGAGGTCGATGCATGTCCCAGACACGTCTTACACTAGCTCTAG
* * * * * *
23056786 TCTCAATGCCGATGCCATGTCCCAGACACGGTCTTGCACTGGTTCTCA-
1 TCTCGAGGTCGATG-CATGTCCCAGACAC-GTCTTACACTAGCTCT-AG
* * *
23056834 TAAT-GTGG-CTGATGCATGTCCCAGACATGTCTTACACTAGC
1 T-CTCGAGGTC-GATGCATGTCCCAGACACGTCTTACACTAGC
23056875 ACACAAATGA
Statistics
Matches: 111, Mismatches: 18, Indels: 12
0.79 0.13 0.09
Matches are distributed among these distances:
46 60 0.54
47 29 0.26
48 20 0.18
49 2 0.02
ACGTcount: A:0.20, C:0.29, G:0.22, T:0.29
Consensus pattern (46 bp):
TCTCGAGGTCGATGCATGTCCCAGACACGTCTTACACTAGCTCTAG
Found at i:23056820 original size:94 final size:96
Alignment explanation
Indices: 23056507--23056825 Score: 262
Period size: 95 Copynumber: 3.4 Consensus size: 96
23056497 CATGGGTTAT
* * * * * * * *
23056507 AATGCCGATGCCATGTCTCAGACATGGTCTTACATTGGCTCATATCTC-AAGTCAATGCCATGTC
1 AATGCCGATGCCATGTCCCAGACACGGTCTTACACTAGCTTACATCTCGAGGTCGATGCCATGTC
* * *
23056571 CTAGACATCGTCTTA-ACTGACTATCGTCATC
66 CCAGACATCGTCTTACACTGACTCTAGTC-TC
* * * * * * * * *
23056602 GAGGCCGATGCCATGTCCTAGACATGGTCTTACACTAGCTCTCACATATTTG-TGCCGAAGCCAT
1 AATGCCGATGCCATGTCCCAGACACGGTCTTACACTAGCT-T-ACAT-CTCGAGGTCGATGCCAT
* * *
23056666 GTTCCAGACATGGTCTTACACTGACAC-A-TCTC
63 GTCCCAGACATCGTCTTACACTGACTCTAGTCTC
* ** *
23056698 -GTGGTTGATG-CATGTCCCAGACAC-GTCTTACACTAGCTTACGTCTCGAGGTCGATG-CATGT
1 AAT-GCCGATGCCATGTCCCAGACACGGTCTTACACTAGCTTACATCTCGAGGTCGATGCCATGT
*
23056759 CCCAGACAT-GTCTTACACTGGCTCTAGTCTC
65 CCCAGACATCGTCTTACACTGACTCTAGTCTC
*
23056790 AATGCCGATGCCATGTCCCAGACACGGTCTTGCACT
1 AATGCCGATGCCATGTCCCAGACACGGTCTTACACT
23056826 GGTTCTCATA
Statistics
Matches: 173, Mismatches: 39, Indels: 25
0.73 0.16 0.11
Matches are distributed among these distances:
90 13 0.08
91 16 0.09
92 17 0.10
93 16 0.09
94 23 0.13
95 46 0.27
96 7 0.04
97 5 0.03
98 24 0.14
99 6 0.03
ACGTcount: A:0.23, C:0.29, G:0.20, T:0.28
Consensus pattern (96 bp):
AATGCCGATGCCATGTCCCAGACACGGTCTTACACTAGCTTACATCTCGAGGTCGATGCCATGTC
CCAGACATCGTCTTACACTGACTCTAGTCTC
Found at i:23059286 original size:26 final size:25
Alignment explanation
Indices: 23059178--23059285 Score: 123
Period size: 25 Copynumber: 4.4 Consensus size: 25
23059168 CTGAAGGCCT
* *
23059178 AGCCTCTTTTAAT-AACTAGGGC-AA
1 AGCC-CTTTTGATAAACTGGGGCAAA
23059202 AGCCCTTTTGATAAACTGGGGCAAA
1 AGCCCTTTTGATAAACTGGGGCAAA
*
23059227 AGCCCTTTTAATAAACTGGGGCAAA
1 AGCCCTTTTGATAAACTGGGGCAAA
* * *
23059252 AGTCCTTTTCGGTAAACTGGGGC-AT
1 AGCCCTTTT-GATAAACTGGGGCAAA
23059277 AGCCCTTTT
1 AGCCCTTTT
23059286 TGCACTTCCT
Statistics
Matches: 73, Mismatches: 8, Indels: 5
0.85 0.09 0.06
Matches are distributed among these distances:
23 7 0.10
24 12 0.16
25 43 0.59
26 11 0.15
ACGTcount: A:0.29, C:0.21, G:0.21, T:0.29
Consensus pattern (25 bp):
AGCCCTTTTGATAAACTGGGGCAAA
Found at i:23059735 original size:20 final size:21
Alignment explanation
Indices: 23059710--23059751 Score: 59
Period size: 20 Copynumber: 2.0 Consensus size: 21
23059700 AATGGGCCCG
*
23059710 TCAGCCCATTG-GGCCCGACT
1 TCAGCCCATTGAGGCCCAACT
*
23059730 TCAGCCCCTTGAGGCCCAACT
1 TCAGCCCATTGAGGCCCAACT
23059751 T
1 T
23059752 ACCGTGATGC
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
20 10 0.53
21 9 0.47
ACGTcount: A:0.17, C:0.40, G:0.21, T:0.21
Consensus pattern (21 bp):
TCAGCCCATTGAGGCCCAACT
Found at i:23061691 original size:40 final size:40
Alignment explanation
Indices: 23061591--23061762 Score: 213
Period size: 40 Copynumber: 4.3 Consensus size: 40
23061581 GCTCCTCGTT
* * *
23061591 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
**
23061631 C-AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
* * *
23061670 CGAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
* * * *
23061710 CAAAGGCCTTCGGGGCTTAACCCGGAATTT-GTATCTCGCA
1 CAAATGCCTTCGGGACATAACCCGG-ATTTAGTAACTCGCA
23061750 CAAATGCCTTCGG
1 CAAATGCCTTCGG
23061763 ATCTTAGTCC
Statistics
Matches: 117, Mismatches: 13, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
39 34 0.29
40 79 0.68
41 4 0.03
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
Found at i:23061775 original size:80 final size:79
Alignment explanation
Indices: 23061591--23061815 Score: 231
Period size: 80 Copynumber: 2.8 Consensus size: 79
23061581 GCTCCTCGTT
* * * * *
23061591 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACACAATGCCTTCGGGACATAACCCGG-
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGT-ACTCGCACAAAGCCTTCGGGACTTAACCCGGA
23061655 ATTTAACAACTCGCA
65 ATTTAACAACTCGCA
* * *
23061670 CGAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACAAAGGCCTTCGGGGCTTAACCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTA-CTCGCACAAA-GCCTTCGGGACTTAACCCGG
** *
23061735 AATTT-GTATCTCGCA
64 AATTTAACAACTCGCA
* * * * *
23061750 CAAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCACAAAGCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGT-AC-TCGCACAAAGCCTTCGGGACTTAACCCG
23061814 GA
63 GA
23061816 CAGCATTCAA
Statistics
Matches: 121, Mismatches: 19, Indels: 11
0.80 0.13 0.07
Matches are distributed among these distances:
78 1 0.01
79 39 0.32
80 68 0.56
81 13 0.11
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (79 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTACTCGCACAAAGCCTTCGGGACTTAACCCGGAA
TTTAACAACTCGCA
Found at i:23061824 original size:41 final size:41
Alignment explanation
Indices: 23061747--23061824 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
23061737 TTTGTATCTC
* * *
23061747 GCACAAATGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
23061788 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAATGCCTTC-GGATCTTAGCCCGGACA-CATTCA
23061825 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (41 bp):
GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:23070187 original size:31 final size:31
Alignment explanation
Indices: 23070152--23070215 Score: 92
Period size: 31 Copynumber: 2.1 Consensus size: 31
23070142 CCTTTTCATG
* *
23070152 TTTCATATTTCATAACACTGGGCCGAAGCCT
1 TTTCATATTTCATAACAATGGGCCAAAGCCT
**
23070183 TTTCATATTTCATATTAATGGGCCAAAGCCT
1 TTTCATATTTCATAACAATGGGCCAAAGCCT
23070214 TT
1 TT
23070216 ACTGTAGACG
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.27, C:0.22, G:0.14, T:0.38
Consensus pattern (31 bp):
TTTCATATTTCATAACAATGGGCCAAAGCCT
Found at i:23070533 original size:26 final size:25
Alignment explanation
Indices: 23070424--23070531 Score: 132
Period size: 25 Copynumber: 4.4 Consensus size: 25
23070414 CTGGACGCCT
*
23070424 AGCCTCTTTTAAT-AACTGGGGC-AA
1 AGCC-CTTTTGATAAACTGGGGCAAA
23070448 AGCCCTTTTGATAAACTGGGGCAAA
1 AGCCCTTTTGATAAACTGGGGCAAA
* *
23070473 AGCCATTTTAATAAACTGGGGCAAA
1 AGCCCTTTTGATAAACTGGGGCAAA
* *
23070498 AGCCCTTTTCGGTAAACTGGGGCATA
1 AGCCCTTTT-GATAAACTGGGGCAAA
23070524 A-CCCTTTT
1 AGCCCTTTT
23070532 TCCACTTCCT
Statistics
Matches: 74, Mismatches: 7, Indels: 5
0.86 0.08 0.06
Matches are distributed among these distances:
23 7 0.09
24 13 0.18
25 40 0.54
26 14 0.19
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.28
Consensus pattern (25 bp):
AGCCCTTTTGATAAACTGGGGCAAA
Found at i:23070602 original size:20 final size:20
Alignment explanation
Indices: 23070579--23070625 Score: 78
Period size: 20 Copynumber: 2.4 Consensus size: 20
23070569 TTATGAATAC
23070579 ATCATGTGCATATCATA-CA
1 ATCATGTGCATATCATATCA
23070598 TATCATGTGCATATCATATCA
1 -ATCATGTGCATATCATATCA
23070619 ATCATGT
1 ATCATGT
23070626 ATATCAAAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
20 24 0.92
21 2 0.08
ACGTcount: A:0.34, C:0.19, G:0.11, T:0.36
Consensus pattern (20 bp):
ATCATGTGCATATCATATCA
Found at i:23085056 original size:40 final size:40
Alignment explanation
Indices: 23085011--23085199 Score: 148
Period size: 40 Copynumber: 4.7 Consensus size: 40
23085001 ATGATGATTT
* *
23085011 GGCTATATATGGCACTTAGTGTGCGACTCGAGATAGCTTC
1 GGCTATATATGGCACTTAGTGTGCGACTCAAAATAGCTTC
* * *
23085051 GGCTATATATGGCACTTAGTTTGCGATTCAAAATAGCTTT
1 GGCTATATATGGCACTTAGTGTGCGACTCAAAATAGCTTC
* * * **
23085091 GGCTATATGTGGCACTTAGTATGAGAGACT-AAGGTAGCTTC
1 GGCTATATATGGCACTTAG--TGTGCGACTCAAAATAGCTTC
* * * * * *
23085132 AGCTATGA-AAGACAATTAGTGTGCGAGATTAAAATAGCTTC
1 GGCTAT-ATATGGCACTTAGTGTGCGA-CTCAAAATAGCTTC
* * *
23085173 GGCTATGTTTTTGCACTTAGTGTGCGA
1 GGCTAT-ATATGGCACTTAGTGTGCGA
23085200 GAATTCAAGT
Statistics
Matches: 113, Mismatches: 30, Indels: 10
0.74 0.20 0.07
Matches are distributed among these distances:
39 5 0.04
40 54 0.48
41 35 0.31
42 19 0.17
ACGTcount: A:0.27, C:0.15, G:0.25, T:0.32
Consensus pattern (40 bp):
GGCTATATATGGCACTTAGTGTGCGACTCAAAATAGCTTC
Found at i:23087844 original size:99 final size:99
Alignment explanation
Indices: 23087673--23087852 Score: 308
Period size: 99 Copynumber: 1.8 Consensus size: 99
23087663 CTATTGTGAA
* *
23087673 GTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACAGGATAATTGGTCGCATGTGTAGTAC
1 GTCACATGTGTAGCACTAAGTGCAGGCTACTACGTGTACAGGATAATTGGTCGCATGTGTAGTAC
*
23087738 TAAGTGCAGGCTACTACGTGTATTAGATGGTTAG
66 TAAGTGCAGACTACTACGTGTATTAGATGGTTAG
*
23087772 GTCACATGTGTAGCACTAAGTGCAGGCTACTATGTGTACCA-GATAATTGGTCGCATGTGTAGTA
1 GTCACATGTGTAGCACTAAGTGCAGGCTACTACGTGTA-CAGGATAATTGGTCGCATGTGTAGTA
23087836 CTAAGTGCAGACTACTA
65 CTAAGTGCAGACTACTA
23087853 TGCGTACCTG
Statistics
Matches: 76, Mismatches: 4, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
99 74 0.97
100 2 0.03
ACGTcount: A:0.27, C:0.17, G:0.27, T:0.29
Consensus pattern (99 bp):
GTCACATGTGTAGCACTAAGTGCAGGCTACTACGTGTACAGGATAATTGGTCGCATGTGTAGTAC
TAAGTGCAGACTACTACGTGTATTAGATGGTTAG
Found at i:23087860 original size:49 final size:49
Alignment explanation
Indices: 23087679--23087852 Score: 251
Period size: 49 Copynumber: 3.5 Consensus size: 49
23087669 TGAAGTCACG
23087679 TGTGTAGTACTAAGTGCAGGCTACTACGTGTA-CAGGATAATTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCA-GATAATTGGTCGCA
** ** *
23087728 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATTAGATGGTTAGGTCACA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT-GGTCGCA
* *
23087778 TGTGTAGCACTAAGTGCAGGCTACTATGTGTACCAGATAATTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCGCA
*
23087827 TGTGTAGTACTAAGTGCAGACTACTA
1 TGTGTAGTACTAAGTGCAGGCTACTA
23087853 TGCGTACCTG
Statistics
Matches: 110, Mismatches: 13, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
49 67 0.61
50 43 0.39
ACGTcount: A:0.27, C:0.16, G:0.27, T:0.30
Consensus pattern (49 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCGCA
Found at i:23091734 original size:33 final size:33
Alignment explanation
Indices: 23091640--23091735 Score: 97
Period size: 34 Copynumber: 2.9 Consensus size: 33
23091630 TCAAGCCCAT
* * *
23091640 TGGGCCTAAGCCCTATTCAGATAACAGCAGGTAC
1 TGGGCCTAAGCCCTTTTCAGATAACAGTA-GAAC
* *
23091674 TGGGCCGAAGCCCTTTTTAGA-ATACAGTA-AAC
1 TGGGCCTAAGCCCTTTTCAGATA-ACAGTAGAAC
*
23091706 TGGGCCTTAGTCCCTTTTCAGATAACAGTA
1 TGGGCCTAAG-CCCTTTTCAGATAACAGTA
23091736 TGACCCATAG
Statistics
Matches: 51, Mismatches: 8, Indels: 7
0.77 0.12 0.11
Matches are distributed among these distances:
32 10 0.20
33 17 0.33
34 24 0.47
ACGTcount: A:0.28, C:0.24, G:0.22, T:0.26
Consensus pattern (33 bp):
TGGGCCTAAGCCCTTTTCAGATAACAGTAGAAC
Found at i:23097213 original size:49 final size:49
Alignment explanation
Indices: 23097156--23097254 Score: 198
Period size: 49 Copynumber: 2.0 Consensus size: 49
23097146 GGCTTAATTT
23097156 TCCCTACAGTCTCAGTTTTGTAGCCTTAATACTACCTTATCTATAGTAC
1 TCCCTACAGTCTCAGTTTTGTAGCCTTAATACTACCTTATCTATAGTAC
23097205 TCCCTACAGTCTCAGTTTTGTAGCCTTAATACTACCTTATCTATAGTAC
1 TCCCTACAGTCTCAGTTTTGTAGCCTTAATACTACCTTATCTATAGTAC
23097254 T
1 T
23097255 ATATCTAAGG
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
49 50 1.00
ACGTcount: A:0.24, C:0.26, G:0.10, T:0.39
Consensus pattern (49 bp):
TCCCTACAGTCTCAGTTTTGTAGCCTTAATACTACCTTATCTATAGTAC
Found at i:23102267 original size:49 final size:49
Alignment explanation
Indices: 23102188--23102618 Score: 488
Period size: 49 Copynumber: 8.7 Consensus size: 49
23102178 TCTATTGTGA
* *
23102188 GGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAAATAATT
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
* * * * * *
23102237 GGCCGCATGTGTAGTACTAAGTGCATGCTACTATGCGTACCCGATAACTT
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAA-TT
* * *
23102287 CGATCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAAATAATT
1 -GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
* * * * * *
23102337 GGCCGCATGTGTAGTACTAAGTGCATGCTACTATGCGTACCCGATAACTT
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAA-TT
* * *
23102387 CGATCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAAATAATT
1 -GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
* * * * * *
23102437 GGCCGCATGTGTAGTACTAAGTGCATGCTACTATGCGTACCCGATAACTT
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAA-TT
* * * *
23102487 CGATCACGTGTGTAGTACTAAGTGCAGGCTACTACATGTACCGGATAATT
1 -GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
* *
23102537 GGTCGCATGTGTAGTAATAAGTGCAGGCTACTACGTGTA-CAGGATGAA-T
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCA-GAT-AATT
23102586 GGTCACATGTGTAGTACTAAGTGCAGGCTACTA
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTA
23102619 TGCATACCAG
Statistics
Matches: 313, Mismatches: 61, Indels: 16
0.80 0.16 0.04
Matches are distributed among these distances:
48 1 0.00
49 184 0.59
50 14 0.04
51 114 0.36
ACGTcount: A:0.27, C:0.20, G:0.25, T:0.28
Consensus pattern (49 bp):
GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
Found at i:23102363 original size:100 final size:100
Alignment explanation
Indices: 23102190--23102618 Score: 720
Period size: 100 Copynumber: 4.3 Consensus size: 100
23102180 TATTGTGAGG
23102190 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAAATAATTGGCCGCATGTGTAGTACT
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAAATAATTGGCCGCATGTGTAGTACT
23102255 AAGTGCATGCTACTATGCGTACCCGATAACTTCGA
66 AAGTGCATGCTACTATGCGTACCCGATAACTTCGA
23102290 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAAATAATTGGCCGCATGTGTAGTACT
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAAATAATTGGCCGCATGTGTAGTACT
23102355 AAGTGCATGCTACTATGCGTACCCGATAACTTCGA
66 AAGTGCATGCTACTATGCGTACCCGATAACTTCGA
23102390 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAAATAATTGGCCGCATGTGTAGTACT
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAAATAATTGGCCGCATGTGTAGTACT
23102455 AAGTGCATGCTACTATGCGTACCCGATAACTTCGA
66 AAGTGCATGCTACTATGCGTACCCGATAACTTCGA
* ** * *
23102490 TCACGTGTGTAGTACTAAGTGCAGGCTACTACATGTACCGGATAATTGGTCGCATGTGTAGTAAT
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAAATAATTGGCCGCATGTGTAGTACT
* * * ** *
23102555 AAGTGCAGGCTACTACGTGTACAGGATGAA--T-GG
66 AAGTGCATGCTACTATGCGTACCCGAT-AACTTCGA
*
23102588 TCACATGTGTAGTACTAAGTGCAGGCTACTA
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTA
23102619 TGCATACCAG
Statistics
Matches: 316, Mismatches: 12, Indels: 4
0.95 0.04 0.01
Matches are distributed among these distances:
98 31 0.10
99 1 0.00
100 282 0.89
101 2 0.01
ACGTcount: A:0.27, C:0.21, G:0.24, T:0.28
Consensus pattern (100 bp):
TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAAATAATTGGCCGCATGTGTAGTACT
AAGTGCATGCTACTATGCGTACCCGATAACTTCGA
Found at i:23121042 original size:27 final size:27
Alignment explanation
Indices: 23121012--23121086 Score: 78
Period size: 27 Copynumber: 2.8 Consensus size: 27
23121002 TACCCTATAG
*
23121012 GGGTATGTCAATTATTTTACACTACAA
1 GGGTATGTCAATAATTTTACACTACAA
* **
23121039 GGGTATTTCGGTAATTTTACACTACAA
1 GGGTATGTCAATAATTTTACACTACAA
** * *
23121066 CAGTATTTCGATAATTTTACA
1 GGGTATGTCAATAATTTTACA
23121087 AATCGAGGGT
Statistics
Matches: 41, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 41 1.00
ACGTcount: A:0.32, C:0.15, G:0.15, T:0.39
Consensus pattern (27 bp):
GGGTATGTCAATAATTTTACACTACAA
Found at i:23121107 original size:27 final size:27
Alignment explanation
Indices: 23121077--23121381 Score: 379
Period size: 27 Copynumber: 11.4 Consensus size: 27
23121067 AGTATTTCGA
23121077 TAATTTTACAAATCGAGGGTGTTTTAG
1 TAATTTTACAAATCGAGGGTGTTTTAG
* *
23121104 TAATTTTACAAATCGAGGGTATTTTGG
1 TAATTTTACAAATCGAGGGTGTTTTAG
* * *
23121131 TAATTTTACAAATCAAGGGT-ATTTCG
1 TAATTTTACAAATCGAGGGTGTTTTAG
* *
23121157 TAATTTTACAAATCGAGGGTGTTTCAT
1 TAATTTTACAAATCGAGGGTGTTTTAG
* *
23121184 TAATTTCAC-AATCGAGGGTATTTTAG
1 TAATTTTACAAATCGAGGGTGTTTTAG
*
23121210 TAATTTTACAAATCGAGGGTG-TTTCG
1 TAATTTTACAAATCGAGGGTGTTTTAG
* *
23121236 TTAATTTCAC-AATCGAGGGTATTTTAG
1 -TAATTTTACAAATCGAGGGTGTTTTAG
* *
23121263 TAATTTTACAAATCGAGGGTGTTTCAT
1 TAATTTTACAAATCGAGGGTGTTTTAG
* *
23121290 TAATTTCAC-AATCGAGGGTATTTTAG
1 TAATTTTACAAATCGAGGGTGTTTTAG
**
23121316 TAATTTTACAAATCGAGGGTGTTTCGG
1 TAATTTTACAAATCGAGGGTGTTTTAG
*
23121343 TAATTTTACAAATCGAGGGTG-TTTCG
1 TAATTTTACAAATCGAGGGTGTTTTAG
23121369 ATAATTTTACAAA
1 -TAATTTTACAAA
23121382 NNNNNNNNNN
Statistics
Matches: 237, Mismatches: 34, Indels: 14
0.83 0.12 0.05
Matches are distributed among these distances:
26 92 0.39
27 145 0.61
ACGTcount: A:0.30, C:0.10, G:0.20, T:0.39
Consensus pattern (27 bp):
TAATTTTACAAATCGAGGGTGTTTTAG
Found at i:23121188 original size:53 final size:53
Alignment explanation
Indices: 23121071--23121381 Score: 437
Period size: 53 Copynumber: 5.8 Consensus size: 53
23121061 TACAACAGTA
* * * *
23121071 TTTCGATAATTTTACAAATCGAGGGTGTTTTAGTAATTTTACAAATCGAGGGTA
1 TTTCGTTAATTTCAC-AATCGAGGGTATTTTAGTAATTTTACAAATCGAGGGTG
* * * * *
23121125 TTTTGGTAATTTTACAAATCAAGGGTA-TTTCGTAATTTTACAAATCGAGGGTG
1 TTTCGTTAATTTCAC-AATCGAGGGTATTTTAGTAATTTTACAAATCGAGGGTG
*
23121178 TTTCATTAATTTCACAATCGAGGGTATTTTAGTAATTTTACAAATCGAGGGTG
1 TTTCGTTAATTTCACAATCGAGGGTATTTTAGTAATTTTACAAATCGAGGGTG
23121231 TTTCGTTAATTTCACAATCGAGGGTATTTTAGTAATTTTACAAATCGAGGGTG
1 TTTCGTTAATTTCACAATCGAGGGTATTTTAGTAATTTTACAAATCGAGGGTG
*
23121284 TTTCATTAATTTCACAATCGAGGGTATTTTAGTAATTTTACAAATCGAGGGTG
1 TTTCGTTAATTTCACAATCGAGGGTATTTTAGTAATTTTACAAATCGAGGGTG
* * * *
23121337 TTTCGGTAATTTTACAAATCGAGGGT-GTTTCGATAATTTTACAAA
1 TTTCGTTAATTTCAC-AATCGAGGGTATTTTAG-TAATTTTACAAA
23121382 NNNNNNNNNN
Statistics
Matches: 235, Mismatches: 19, Indels: 6
0.90 0.07 0.02
Matches are distributed among these distances:
52 10 0.04
53 180 0.77
54 45 0.19
ACGTcount: A:0.30, C:0.11, G:0.20, T:0.40
Consensus pattern (53 bp):
TTTCGTTAATTTCACAATCGAGGGTATTTTAGTAATTTTACAAATCGAGGGTG
Found at i:23121220 original size:106 final size:106
Alignment explanation
Indices: 23121077--23121381 Score: 495
Period size: 106 Copynumber: 2.9 Consensus size: 106
23121067 AGTATTTCGA
* * * *
23121077 TAATTTTACAAATCGAGGGTGTTTTAGTAATTTTACAAATCGAGGGTATTTTGGTAATTTTACAA
1 TAATTTCAC-AATCGAGGGTATTTTAGTAATTTTACAAATCGAGGGTGTTTCGGTAATTTTACAA
*
23121142 ATCAAGGGTATTTCGTAATTTTACAAATCGAGGGTGTTTCAT
65 ATCGAGGGTATTTCGTAATTTTACAAATCGAGGGTGTTTCAT
* *
23121184 TAATTTCACAATCGAGGGTATTTTAGTAATTTTACAAATCGAGGGTGTTTCGTTAATTTCAC-AA
1 TAATTTCACAATCGAGGGTATTTTAGTAATTTTACAAATCGAGGGTGTTTCGGTAATTTTACAAA
*
23121248 TCGAGGGTATTTTAGTAATTTTACAAATCGAGGGTGTTTCAT
66 TCGAGGGTA-TTTCGTAATTTTACAAATCGAGGGTGTTTCAT
23121290 TAATTTCACAATCGAGGGTATTTTAGTAATTTTACAAATCGAGGGTGTTTCGGTAATTTTACAAA
1 TAATTTCACAATCGAGGGTATTTTAGTAATTTTACAAATCGAGGGTGTTTCGGTAATTTTACAAA
*
23121355 TCGAGGGTGTTTCGATAATTTTACAAA
66 TCGAGGGTATTTCG-TAATTTTACAAA
23121382 NNNNNNNNNN
Statistics
Matches: 183, Mismatches: 12, Indels: 6
0.91 0.06 0.03
Matches are distributed among these distances:
105 10 0.05
106 143 0.78
107 30 0.16
ACGTcount: A:0.30, C:0.10, G:0.20, T:0.39
Consensus pattern (106 bp):
TAATTTCACAATCGAGGGTATTTTAGTAATTTTACAAATCGAGGGTGTTTCGGTAATTTTACAAA
TCGAGGGTATTTCGTAATTTTACAAATCGAGGGTGTTTCAT
Found at i:23125134 original size:47 final size:48
Alignment explanation
Indices: 23125077--23125173 Score: 160
Period size: 49 Copynumber: 2.0 Consensus size: 48
23125067 ATTGATGTAC
* *
23125077 AAGTATATATAT-GTGATAGGGCCGAGTGGCCAATGTGATGAATGTGA
1 AAGTATATATATCGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
23125124 AAGTATATATATGCGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
1 AAGTATATATAT-CGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
23125173 A
1 A
23125174 CATGTGTTAT
Statistics
Matches: 46, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
47 12 0.26
49 34 0.74
ACGTcount: A:0.34, C:0.09, G:0.30, T:0.27
Consensus pattern (48 bp):
AAGTATATATATCGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
Found at i:23126799 original size:27 final size:27
Alignment explanation
Indices: 23126769--23126843 Score: 78
Period size: 27 Copynumber: 2.8 Consensus size: 27
23126759 TACCCTATAG
*
23126769 GGGTATGTCAATTATTTTACACTACAA
1 GGGTATGTCAATAATTTTACACTACAA
* **
23126796 GGGTATTTCGGTAATTTTACACTACAA
1 GGGTATGTCAATAATTTTACACTACAA
** * *
23126823 CAGTATTTCGATAATTTTACA
1 GGGTATGTCAATAATTTTACA
23126844 AATCGAGGGT
Statistics
Matches: 41, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 41 1.00
ACGTcount: A:0.32, C:0.15, G:0.15, T:0.39
Consensus pattern (27 bp):
GGGTATGTCAATAATTTTACACTACAA
Found at i:23126858 original size:27 final size:27
Alignment explanation
Indices: 23126825--23127241 Score: 404
Period size: 27 Copynumber: 15.6 Consensus size: 27
23126815 CACTACAACA
23126825 GTATTTCGATAATTTTACAAATCGAGG
1 GTATTTCGATAATTTTACAAATCGAGG
* *
23126852 GTGTTTCGGTAATTTTACAAATCGAGG
1 GTATTTCGATAATTTTACAAATCGAGG
**
23126879 GTATTTTAATAATTTTACAAATCGAGG
1 GTATTTCGATAATTTTACAAATCGAGG
* *
23126906 GTGTTTC-ATTAATTTCAC-AATCGAGG
1 GTATTTCGA-TAATTTTACAAATCGAGG
*
23126932 GTATTT-TAGTAATTTTACAAATCGAGG
1 GTATTTCGA-TAATTTTACAAATCGAGG
* *
23126959 GTGTTTCGGTAATTTTACAAATCGAGG
1 GTATTTCGATAATTTTACAAATCGAGG
*
23126986 GTGTTTCGATAATTTTACAAATCGAGG
1 GTATTTCGATAATTTTACAAATCGAGG
* *
23127013 GTGTTT-TAGTAATTTTACAAATCGAGG
1 GTATTTCGA-TAATTTTACAAATCGAGG
* *
23127040 GTATTTTGTTAATTTTACAAATCGAGG
1 GTATTTCGATAATTTTACAAATCGAGG
*
23127067 GTATTTC-AGTAATTTCAC-AATCGAGG
1 GTATTTCGA-TAATTTTACAAATCGAGG
* * * * * *
23127093 ATATTTTGGTAATTTTATAAATTGGGG
1 GTATTTCGATAATTTTACAAATCGAGG
* *
23127120 GTATTTTGATAATTTTACAAATTGAGG
1 GTATTTCGATAATTTTACAAATCGAGG
* * *
23127147 GTATTT-TAGTAATTTCAC-AATTGAGG
1 GTATTTCGA-TAATTTTACAAATCGAGG
* *
23127173 GTATTTCGATAATTTTATAAAT-TAGG
1 GTATTTCGATAATTTTACAAATCGAGG
* * * * *
23127199 CGCATTTTGGTAATTTTAAAAATTGAGG
1 -GTATTTCGATAATTTTACAAATCGAGG
23127227 GTATTTC-AGTAATTT
1 GTATTTCGA-TAATTT
23127242 CTCTTTATTA
Statistics
Matches: 327, Mismatches: 48, Indels: 30
0.81 0.12 0.07
Matches are distributed among these distances:
26 69 0.21
27 255 0.78
28 3 0.01
ACGTcount: A:0.31, C:0.08, G:0.20, T:0.41
Consensus pattern (27 bp):
GTATTTCGATAATTTTACAAATCGAGG
Found at i:23126954 original size:80 final size:80
Alignment explanation
Indices: 23126825--23127242 Score: 493
Period size: 80 Copynumber: 5.2 Consensus size: 80
23126815 CACTACAACA
* * ** *
23126825 GTATTTC-GATAATTTTACAAATCGAGGGTGTTTCGGTAATTTTACAAATCGAGGGTATTTTAAT
1 GTATTTCAG-TAATTTCAC-AATCGAGGGTATTTTAGTAATTTTACAAATCGAGGGTATTTTGAT
23126889 AATTTTACAAATCGAGG
64 AATTTTACAAATCGAGG
* * * * *
23126906 GTGTTTCATTAATTTCACAATCGAGGGTATTTTAGTAATTTTACAAATCGAGGGTGTTTCGGTAA
1 GTATTTCAGTAATTTCACAATCGAGGGTATTTTAGTAATTTTACAAATCGAGGGTATTTTGATAA
23126971 TTTTACAAATCGAGG
66 TTTTACAAATCGAGG
* * * *
23126986 GTGTTTC-GATAATTTTACAAATCGAGGGTGTTTTAGTAATTTTACAAATCGAGGGTATTTTGTT
1 GTATTTCAG-TAATTTCAC-AATCGAGGGTATTTTAGTAATTTTACAAATCGAGGGTATTTTGAT
23127050 AATTTTACAAATCGAGG
64 AATTTTACAAATCGAGG
* * * * *
23127067 GTATTTCAGTAATTTCACAATCGAGGATATTTTGGTAATTTTATAAATTGGGGGTATTTTGATAA
1 GTATTTCAGTAATTTCACAATCGAGGGTATTTTAGTAATTTTACAAATCGAGGGTATTTTGATAA
*
23127132 TTTTACAAATTGAGG
66 TTTTACAAATCGAGG
* * * * * * *
23127147 GTATTTTAGTAATTTCACAATTGAGGGTA-TTTCGATAATTTTATAAAT-TAGGCGCATTTTGGT
1 GTATTTCAGTAATTTCACAATCGAGGGTATTTTAG-TAATTTTACAAATCGAGG-GTATTTTGAT
* *
23127210 AATTTTAAAAATTGAGG
64 AATTTTACAAATCGAGG
23127227 GTATTTCAGTAATTTC
1 GTATTTCAGTAATTTC
23127243 TCTTTATTAT
Statistics
Matches: 295, Mismatches: 36, Indels: 13
0.86 0.10 0.04
Matches are distributed among these distances:
79 6 0.02
80 202 0.68
81 86 0.29
82 1 0.00
ACGTcount: A:0.31, C:0.09, G:0.20, T:0.41
Consensus pattern (80 bp):
GTATTTCAGTAATTTCACAATCGAGGGTATTTTAGTAATTTTACAAATCGAGGGTATTTTGATAA
TTTTACAAATCGAGG
Done.