Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr3
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 100348136
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 3062571 characters in sequence are not A, C, G, or T
File 75 of 290
Found at i:24925990 original size:50 final size:50
Alignment explanation
Indices: 24925886--24926090 Score: 191
Period size: 50 Copynumber: 4.1 Consensus size: 50
24925876 ATGACCTTGA
* * * * * * * *
24925886 ATATTCGGCCACATAGGTATGTACATATGTGTTGTTGTA-TTGGATCTTGA
1 ATATTCGGCCATATAGGTAAGCACATATGTGATATTATATTTGAAT-TTGT
* * *
24925936 ATATTCAGCCATGA-AGGTATGCACAAATGTGATATTATATTTGAATTTGT
1 ATATTCGGCCAT-ATAGGTAAGCACATATGTGATATTATATTTGAATTTGT
* ** * * *
24925986 ATATTCGGCCATATAAGTAAATACATATGTGATGTTAAATTTG-ATCTTGC
1 ATATTCGGCCATATAGGTAAGCACATATGTGATATTATATTTGAAT-TTGT
* *
24926036 ATATTCGGCCATATAGGTAAGCACATATGTGATATTATATTTTATTTTGT
1 ATATTCGGCCATATAGGTAAGCACATATGTGATATTATATTTGAATTTGT
24926086 ATATT
1 ATATT
24926091 TTGTCAAATG
Statistics
Matches: 124, Mismatches: 26, Indels: 10
0.77 0.16 0.06
Matches are distributed among these distances:
49 3 0.02
50 114 0.92
51 7 0.06
ACGTcount: A:0.31, C:0.11, G:0.18, T:0.40
Consensus pattern (50 bp):
ATATTCGGCCATATAGGTAAGCACATATGTGATATTATATTTGAATTTGT
Found at i:24926060 original size:100 final size:100
Alignment explanation
Indices: 24925886--24926090 Score: 268
Period size: 100 Copynumber: 2.0 Consensus size: 100
24925876 ATGACCTTGA
* ** * **
24925886 ATATTCGGCCACATAGGTATGTACATATGTGTTGTTGTATTGGATCTTGAATATTCAGCCATGAA
1 ATATTCGGCCACATAAGTAAATACATATGTGATGTTAAATTGGATCTTGAATATTCAGCCATGAA
*
24925951 GGTATGCACAAATGTGATATTATATTTGAATTTGT
66 GGTAAGCACAAATGTGATATTATATTTGAATTTGT
* * * *
24925986 ATATTCGGCCATATAAGTAAATACATATGTGATGTTAAATTTGATCTTGCATATTCGGCCAT-AT
1 ATATTCGGCCACATAAGTAAATACATATGTGATGTTAAATTGGATCTTGAATATTCAGCCATGA-
* * *
24926050 AGGTAAGCACATATGTGATATTATATTTTATTTTGT
65 AGGTAAGCACAAATGTGATATTATATTTGAATTTGT
24926086 ATATT
1 ATATT
24926091 TTGTCAAATG
Statistics
Matches: 90, Mismatches: 14, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
99 1 0.01
100 89 0.99
ACGTcount: A:0.31, C:0.11, G:0.18, T:0.40
Consensus pattern (100 bp):
ATATTCGGCCACATAAGTAAATACATATGTGATGTTAAATTGGATCTTGAATATTCAGCCATGAA
GGTAAGCACAAATGTGATATTATATTTGAATTTGT
Found at i:24943506 original size:40 final size:40
Alignment explanation
Indices: 24943449--24943631 Score: 242
Period size: 40 Copynumber: 4.6 Consensus size: 40
24943439 ATTTGAATAC
* * * *
24943449 ATCCGGGCTAAGTCCCGAAGGCATTTATGCTAG-TGATTTT
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGATGA-TAT
*
24943489 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATAT
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGATGATAT
*
24943529 ATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGATGATAT
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGATGATAT
* * * *
24943569 ATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGCTAT
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGATGATAT
* *
24943609 ACCCGGGTTAAGACCCGAAGGCA
1 ATCCGGGCTAAGACCCGAAGGCA
24943632 ACTGTGCTTG
Statistics
Matches: 131, Mismatches: 11, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
40 128 0.98
41 3 0.02
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.23
Consensus pattern (40 bp):
ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGATGATAT
Found at i:24943582 original size:80 final size:80
Alignment explanation
Indices: 24943449--24943631 Score: 269
Period size: 80 Copynumber: 2.3 Consensus size: 80
24943439 ATTTGAATAC
* * *
24943449 ATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTTTATCCGGGCTAAGACCCGAAGGCATT
1 ATCCGGGCTAAGACCCGAAGGCATTTATGCGAGTGATTATATCCGGGCTAAGACCCGAAGGCATT
*
24943514 TGTGCAAGTTGATAT
66 CGTGCAAGTTGATAT
*
24943529 ATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGATGA-TATATCCGGGCTAAGACCCGAAGGCAT
1 ATCCGGGCTAAGACCCGAAGGCATTTATGCGAG-TGATTATATCCGGGCTAAGACCCGAAGGCAT
* *
24943593 TCGTGCGAGTTGCTAT
65 TCGTGCAAGTTGATAT
* *
24943609 ACCCGGGTTAAGACCCGAAGGCA
1 ATCCGGGCTAAGACCCGAAGGCA
24943632 ACTGTGCTTG
Statistics
Matches: 93, Mismatches: 9, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
80 90 0.97
81 3 0.03
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.23
Consensus pattern (80 bp):
ATCCGGGCTAAGACCCGAAGGCATTTATGCGAGTGATTATATCCGGGCTAAGACCCGAAGGCATT
CGTGCAAGTTGATAT
Found at i:24943650 original size:80 final size:80
Alignment explanation
Indices: 24943451--24943658 Score: 267
Period size: 80 Copynumber: 2.6 Consensus size: 80
24943441 TTGAATACAT
* * * * *
24943451 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTTTATCCGGGCTAAGACCCGAAGGCATTTG
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGGTTATATCCGGGCTAAGACCCGAAGGCATTCG
*
24943516 TGCAAGTTGATATAT
66 TGCAAGTTGATATAC
* *
24943531 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGAT-GATATATCCGGGCTAAGACCCGAAGGCATTC
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAG-TGGTTATATCCGGGCTAAGACCCGAAGGCATTC
* *
24943595 GTGCGAGTTGCTATAC
65 GTGCAAGTTGATATAC
* ** *
24943611 CCGGGTTAAGACCCGAAGGCAACTGTGCTTGTGGTTATATCC-GGCTAA
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGGTTATATCCGGGCTAA
24943659 ATTCCGAAGA
Statistics
Matches: 110, Mismatches: 16, Indels: 5
0.84 0.12 0.04
Matches are distributed among these distances:
79 7 0.06
80 102 0.93
81 1 0.01
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (80 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGGTTATATCCGGGCTAAGACCCGAAGGCATTCG
TGCAAGTTGATATAC
Found at i:24945273 original size:50 final size:50
Alignment explanation
Indices: 24945173--24945585 Score: 659
Period size: 50 Copynumber: 8.3 Consensus size: 50
24945163 CGTTGTATTG
* * * * * *
24945173 GATCTTGAATATTCGGCCATGA-AGATATGCACAAATGTAATATTATATTT
1 GATCTTGCATATTCGGCCAT-ATAGGTAAGCACATATGTGATATTAAATTT
* * * * *
24945223 GAAT-TTGTATATTTGGCCATATAAGTAAGTACATATGTGATGTTAAATTT
1 G-ATCTTGCATATTCGGCCATATAGGTAAGCACATATGTGATATTAAATTT
24945273 GATCTTGCATATTCGGCCATATAGGTAAGCACATATGTGATATTAAATTT
1 GATCTTGCATATTCGGCCATATAGGTAAGCACATATGTGATATTAAATTT
24945323 GATCTTGCATATTCGGCCATATAGGTAAGCACATATGTGATATTAAATTT
1 GATCTTGCATATTCGGCCATATAGGTAAGCACATATGTGATATTAAATTT
24945373 GATCTTGCATATTCGGCCATATAGGTAAGCACATATGTGATATTAAATTT
1 GATCTTGCATATTCGGCCATATAGGTAAGCACATATGTGATATTAAATTT
24945423 GATCTTGCATATTCGGCCATATAGGTAAGCACATATGTGATATTAAATTT
1 GATCTTGCATATTCGGCCATATAGGTAAGCACATATGTGATATTAAATTT
24945473 GATCTTGCATATTCGGCCATATAGGTAAGCACATATGTGATATTAAATTT
1 GATCTTGCATATTCGGCCATATAGGTAAGCACATATGTGATATTAAATTT
* * *
24945523 GATCTTGCATATTCGGCCATATAGGTTAGCACATATGTGATGTTATATTT
1 GATCTTGCATATTCGGCCATATAGGTAAGCACATATGTGATATTAAATTT
*
24945573 GATCTTGTATATT
1 GATCTTGCATATT
24945586 TGACCAAATG
Statistics
Matches: 341, Mismatches: 19, Indels: 6
0.93 0.05 0.02
Matches are distributed among these distances:
49 3 0.01
50 336 0.99
51 2 0.01
ACGTcount: A:0.32, C:0.13, G:0.18, T:0.38
Consensus pattern (50 bp):
GATCTTGCATATTCGGCCATATAGGTAAGCACATATGTGATATTAAATTT
Found at i:24945305 original size:100 final size:100
Alignment explanation
Indices: 24945126--24945585 Score: 663
Period size: 100 Copynumber: 4.6 Consensus size: 100
24945116 GCTAAATGCC
* * * * * * * ** * *
24945126 CTTGTATATTTGGCCACATAAGTATGTACATATGTGACGTTGTATTGGATCTTGAATATTCGGCC
1 CTTGCATATTCGGCCATATAGGTAAGCACATATGTGATGTTAAATTTGATCTTGCATATTCGGCC
* * * * *
24945191 ATGA-AGATATGCACAAATGTAATATTATATTTGAAT
66 AT-ATAGGTAAGCACATATGTGATATTAAATTTG-AT
* * * *
24945227 -TTGTATATTTGGCCATATAAGTAAGTACATATGTGATGTTAAATTTGATCTTGCATATTCGGCC
1 CTTGCATATTCGGCCATATAGGTAAGCACATATGTGATGTTAAATTTGATCTTGCATATTCGGCC
24945291 ATATAGGTAAGCACATATGTGATATTAAATTTGAT
66 ATATAGGTAAGCACATATGTGATATTAAATTTGAT
*
24945326 CTTGCATATTCGGCCATATAGGTAAGCACATATGTGATATTAAATTTGATCTTGCATATTCGGCC
1 CTTGCATATTCGGCCATATAGGTAAGCACATATGTGATGTTAAATTTGATCTTGCATATTCGGCC
24945391 ATATAGGTAAGCACATATGTGATATTAAATTTGAT
66 ATATAGGTAAGCACATATGTGATATTAAATTTGAT
*
24945426 CTTGCATATTCGGCCATATAGGTAAGCACATATGTGATATTAAATTTGATCTTGCATATTCGGCC
1 CTTGCATATTCGGCCATATAGGTAAGCACATATGTGATGTTAAATTTGATCTTGCATATTCGGCC
24945491 ATATAGGTAAGCACATATGTGATATTAAATTTGAT
66 ATATAGGTAAGCACATATGTGATATTAAATTTGAT
* * *
24945526 CTTGCATATTCGGCCATATAGGTTAGCACATATGTGATGTTATATTTGATCTTGTATATT
1 CTTGCATATTCGGCCATATAGGTAAGCACATATGTGATGTTAAATTTGATCTTGCATATT
24945586 TGACCAAATG
Statistics
Matches: 336, Mismatches: 21, Indels: 5
0.93 0.06 0.01
Matches are distributed among these distances:
99 3 0.01
100 333 0.99
ACGTcount: A:0.31, C:0.13, G:0.18, T:0.38
Consensus pattern (100 bp):
CTTGCATATTCGGCCATATAGGTAAGCACATATGTGATGTTAAATTTGATCTTGCATATTCGGCC
ATATAGGTAAGCACATATGTGATATTAAATTTGAT
Found at i:24954274 original size:42 final size:42
Alignment explanation
Indices: 24954226--24954386 Score: 164
Period size: 42 Copynumber: 3.8 Consensus size: 42
24954216 ATTAGGGTTA
*
24954226 ATGAGACTATGTGTAAGACCATATCTGAGATATGACATCAAT
1 ATGAGACTACGTGTAAGACCATATCTGAGATATGACATCAAT
* *
24954268 ATGAGACTACGTGTAAGACCATATCTGGGATATGGA-ATCGAT
1 ATGAGACTACGTGTAAGACCATATCTGAGATAT-GACATCAAT
** * * * *
24954310 ATGAGACTTTGTGTAAGACCATAGCT-AGGCTATTGGCATCTAT
1 ATGAGACTACGTGTAAGACCATATCTGA-GATA-TGACATCAAT
* * * *
24954353 ACGAGATTACATGTAAGACCATATCTGGGATATG
1 ATGAGACTACGTGTAAGACCATATCTGAGATATG
24954387 GCATTGGTAC
Statistics
Matches: 96, Mismatches: 18, Indels: 10
0.77 0.15 0.08
Matches are distributed among these distances:
42 65 0.68
43 31 0.32
ACGTcount: A:0.34, C:0.15, G:0.23, T:0.29
Consensus pattern (42 bp):
ATGAGACTACGTGTAAGACCATATCTGAGATATGACATCAAT
Found at i:24954385 original size:85 final size:84
Alignment explanation
Indices: 24954226--24954387 Score: 227
Period size: 85 Copynumber: 1.9 Consensus size: 84
24954216 ATTAGGGTTA
* * *
24954226 ATGAGACTATGTGTAAGACCATATCTGAGATATGACATCAATATGAGACTACGTGTAAGACCATA
1 ATGAGACTATGTGTAAGACCATAGCTGAGATATGACATCAATACGAGACTACATGTAAGACCATA
24954291 TCTGGGATATGGAATCGAT
66 TCTGGGATATGGAATCGAT
* * * * *
24954310 ATGAGACTTTGTGTAAGACCATAGCT-AGGCTATTGGCATCTATACGAGATTACATGTAAGACCA
1 ATGAGACTATGTGTAAGACCATAGCTGA-GATA-TGACATCAATACGAGACTACATGTAAGACCA
24954374 TATCTGGGATATGG
64 TATCTGGGATATGG
24954388 CATTGGTACG
Statistics
Matches: 68, Mismatches: 8, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
83 1 0.01
84 27 0.40
85 40 0.59
ACGTcount: A:0.33, C:0.15, G:0.23, T:0.28
Consensus pattern (84 bp):
ATGAGACTATGTGTAAGACCATAGCTGAGATATGACATCAATACGAGACTACATGTAAGACCATA
TCTGGGATATGGAATCGAT
Found at i:24954408 original size:85 final size:84
Alignment explanation
Indices: 24954235--24954409 Score: 192
Period size: 85 Copynumber: 2.1 Consensus size: 84
24954225 AATGAGACTA
* * *
24954235 TGTGTAAGACCATATCTGAGATATGACATCAATATGAGACTACGTGTAAGACCATATCTGGGATA
1 TGTGTAAGACCATAGCTGAGATATGACATCAATACGAGACTACATGTAAGACCATATCTGGGATA
* **
24954300 TGGAATCGATATGAGACTT
66 TGGAATCGATACGAGACCG
* * * *
24954319 TGTGTAAGACCATAGCT-AGGCTATTGGCATCTATACGAGATTACATGTAAGACCATATCTGGGA
1 TGTGTAAGACCATAGCTGA-GATA-TGACATCAATACGAGACTACATGTAAGACCATATCTGGGA
* * *
24954383 TATGGCATTGGTACG-GTACCG
64 TATGGAATCGATACGAG-ACCG
24954404 TGTGTA
1 TGTGTA
24954410 CGAGACTCCC
Statistics
Matches: 75, Mismatches: 13, Indels: 5
0.81 0.14 0.05
Matches are distributed among these distances:
83 1 0.01
84 20 0.27
85 54 0.72
ACGTcount: A:0.31, C:0.15, G:0.25, T:0.29
Consensus pattern (84 bp):
TGTGTAAGACCATAGCTGAGATATGACATCAATACGAGACTACATGTAAGACCATATCTGGGATA
TGGAATCGATACGAGACCG
Found at i:24959413 original size:48 final size:48
Alignment explanation
Indices: 24959361--24959579 Score: 219
Period size: 48 Copynumber: 4.6 Consensus size: 48
24959351 CATCTTCGAA
* * * *
24959361 ACATGGTGTTACAATGGCT-TACATGTCGAAGCTGATGCCATGTCCCAG
1 ACATGGTCTTACACTGGCTCT-CATATCGAAGCCGATGCCATGTCCCAG
* * * * *
24959409 ACATGGTCTTACACTAGCGCACATAT-AAATGCCGATGCCATGTCCTAG
1 ACATGGTCTTACACTGGCTCTCATATCGAA-GCCGATGCCATGTCCCAG
* * ** *
24959457 ACATGGTCTTACACTGGCTCTCATGTTGTGGCCGATGCCATGTCCCAA
1 ACATGGTCTTACACTGGCTCTCATATCGAAGCCGATGCCATGTCCCAG
* * *
24959505 ACATGGTCTTACACTGGCTCTCATATC-ATGGCTGAAGCCATGTCCCAG
1 ACATGGTCTTACACTGGCTCTCATATCGA-AGCCGATGCCATGTCCCAG
* *
24959553 ACATGGTCTTACACTGGCACACATATC
1 ACATGGTCTTACACTGGCTCTCATATC
24959580 ACCCAAATGT
Statistics
Matches: 141, Mismatches: 26, Indels: 8
0.81 0.15 0.05
Matches are distributed among these distances:
47 2 0.01
48 139 0.99
ACGTcount: A:0.25, C:0.27, G:0.21, T:0.27
Consensus pattern (48 bp):
ACATGGTCTTACACTGGCTCTCATATCGAAGCCGATGCCATGTCCCAG
Found at i:24959509 original size:96 final size:96
Alignment explanation
Indices: 24959394--24959570 Score: 266
Period size: 96 Copynumber: 1.8 Consensus size: 96
24959384 TGTCGAAGCT
* * *
24959394 GATGCCATGTCCCAGACATGGTCTTACACTAGCGCACATATAAAT-GCCGATGCCATGTCCTAGA
1 GATGCCATGTCCCAAACATGGTCTTACACTAGCGCACATAT-AATGGCCGAAGCCATGTCCCAGA
24959458 CATGGTCTTACACTGGCTCTCATGTTGTGGCC
65 CATGGTCTTACACTGGCTCTCATGTTGTGGCC
* * * * *
24959490 GATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCATATCATGGCTGAAGCCATGTCCCAGAC
1 GATGCCATGTCCCAAACATGGTCTTACACTAGCGCACATATAATGGCCGAAGCCATGTCCCAGAC
24959555 ATGGTCTTACACTGGC
66 ATGGTCTTACACTGGC
24959571 ACACATATCA
Statistics
Matches: 72, Mismatches: 8, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
95 2 0.03
96 70 0.97
ACGTcount: A:0.23, C:0.29, G:0.21, T:0.27
Consensus pattern (96 bp):
GATGCCATGTCCCAAACATGGTCTTACACTAGCGCACATATAATGGCCGAAGCCATGTCCCAGAC
ATGGTCTTACACTGGCTCTCATGTTGTGGCC
Found at i:24959580 original size:48 final size:48
Alignment explanation
Indices: 24959394--24959580 Score: 241
Period size: 48 Copynumber: 3.9 Consensus size: 48
24959384 TGTCGAAGCT
* * *
24959394 GATGCCATGTCCCAGACATGGTCTTACACTAGCGCACATATAAAT-GCC
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATAT-CATGGCC
* * * **
24959442 GATGCCATGTCCTAGACATGGTCTTACACTGGCTCTCATGTTGTGGCC
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATATCATGGCC
* * *
24959490 GATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCATATCATGGCT
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATATCATGGCC
* *
24959538 GAAGCCATGTCCCAGACATGGTCTTACACTGGCACACATATCA
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATATCA
24959581 CCCAAATGTC
Statistics
Matches: 121, Mismatches: 17, Indels: 2
0.86 0.12 0.01
Matches are distributed among these distances:
47 1 0.01
48 120 0.99
ACGTcount: A:0.25, C:0.29, G:0.20, T:0.26
Consensus pattern (48 bp):
GATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATATCATGGCC
Found at i:24960014 original size:219 final size:219
Alignment explanation
Indices: 24959635--24960076 Score: 857
Period size: 219 Copynumber: 2.0 Consensus size: 219
24959625 TTGGGACTCT
24959635 ACTACATTGAATTTCATCATGCATTATTCATAAGCTATTTCAACCATATTACACAAAATTAATCA
1 ACTACATTGAATTTCATCATGCATTATTCATAAGCTATTTCAACCATATTACACAAAATTAATCA
24959700 TTCAACACATAATAATGATAAAGTTGCCTTACTTACGTACAACTTACCTCGGTATACAAAAAGTT
66 TTCAACACATAATAATGATAAAGTTGCCTTACTTACGTACAACTTACCTCGGTATACAAAAAGTT
* *
24959765 GGCAACTAGTTGAATTTAGTCTACTTGTTTAGCCTTCCCCCGGTTTAGGCCTGGATTTTGTATTT
131 GGCAACTAATTGAATTTAGTCTACTTGTTTAGCCTTCCCCCGGTCTAGGCCTGGATTTTGTATTT
24959830 CTTGATCTAAAATGATAAAAATTC
196 CTTGATCTAAAATGATAAAAATTC
24959854 ACTACATTGAATTTCATCATGCATTATTCATAAGCTATTTCAACCATATTACACAAAATTAATCA
1 ACTACATTGAATTTCATCATGCATTATTCATAAGCTATTTCAACCATATTACACAAAATTAATCA
*
24959919 TTCAATACATAATAATGATAAAGTTGCCTTACTTACGTACAACTTACCTCGGTATACAAAAAGTT
66 TTCAACACATAATAATGATAAAGTTGCCTTACTTACGTACAACTTACCTCGGTATACAAAAAGTT
24959984 GGCAACTAATTGAATTTAGTCTACTTGTTTAGCCTTCCCCCGGTCTAGGCCTGGATTTTGTATTT
131 GGCAACTAATTGAATTTAGTCTACTTGTTTAGCCTTCCCCCGGTCTAGGCCTGGATTTTGTATTT
24960049 CTTGATCTAAAATGATAAAAATTC
196 CTTGATCTAAAATGATAAAAATTC
24960073 ACTA
1 ACTA
24960077 ATTTAATCAT
Statistics
Matches: 220, Mismatches: 3, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
219 220 1.00
ACGTcount: A:0.34, C:0.19, G:0.12, T:0.36
Consensus pattern (219 bp):
ACTACATTGAATTTCATCATGCATTATTCATAAGCTATTTCAACCATATTACACAAAATTAATCA
TTCAACACATAATAATGATAAAGTTGCCTTACTTACGTACAACTTACCTCGGTATACAAAAAGTT
GGCAACTAATTGAATTTAGTCTACTTGTTTAGCCTTCCCCCGGTCTAGGCCTGGATTTTGTATTT
CTTGATCTAAAATGATAAAAATTC
Found at i:24967376 original size:48 final size:48
Alignment explanation
Indices: 24967323--24967589 Score: 254
Period size: 48 Copynumber: 5.6 Consensus size: 48
24967313 ATGTCGAGGT
* * * *
24967323 CGATGCCATGTACCAGACATGGTCTTACACTAGCTCTCGTCTTA-ATGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATGTTATA-GC
* * * * *
24967371 TGATGCCATATCCCAAACATGGTCTTACACTGGCTCTCATGTTGTGGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATGTTATAGC
* * * * *
24967419 CGATACCATGTCCCAGACATGGTCTTACACTAG-TGCACATATCA-ATGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCT-CTCATGTTATA-GC
* * * * *
24967467 TGATTCCATGTCCCAGACATTGTCTTACATTGGCTCTCATGTTGTAGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATGTTATAGC
* * *
24967515 CGATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCATATCT-TGGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATGT-TATAGC
* *
24967563 CAATGCCATGTCCCCGACATGGTCTTA
1 CGATGCCATGTCCCAGACATGGTCTTA
24967590 TACTAGCACA
Statistics
Matches: 175, Mismatches: 38, Indels: 12
0.78 0.17 0.05
Matches are distributed among these distances:
47 1 0.01
48 171 0.98
49 3 0.02
ACGTcount: A:0.22, C:0.29, G:0.19, T:0.30
Consensus pattern (48 bp):
CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATGTTATAGC
Found at i:24967441 original size:96 final size:96
Alignment explanation
Indices: 24967287--24967557 Score: 339
Period size: 96 Copynumber: 2.8 Consensus size: 96
24967277 ATGCCGTGAT
** * * * *
24967287 CCAAACATGGTCTTATGCTGGCT-TACATGTCGAGGTCGATGCCATGTACCAGACATGGTCTTAC
1 CCAAACATGGTCTTACACTGGCTCT-CATGTTGTGGCCGATGCCATGTCCCAGACATGGTCTTAC
* * *
24967351 ACTAGCTCTCGTCTTAATGCTGATGCCATATC
65 ACTAGCTCTCATATCAATGCTGATGCCATATC
*
24967383 CCAAACATGGTCTTACACTGGCTCTCATGTTGTGGCCGATACCATGTCCCAGACATGGTCTTACA
1 CCAAACATGGTCTTACACTGGCTCTCATGTTGTGGCCGATGCCATGTCCCAGACATGGTCTTACA
* * *
24967448 CTAG-TGCACATATCAATGCTGATTCCATGTC
66 CTAGCT-CTCATATCAATGCTGATGCCATATC
* * * * *
24967479 CCAGACATTGTCTTACATTGGCTCTCATGTTGTAGCCGATGCCATGTCCCAAACATGGTCTTACA
1 CCAAACATGGTCTTACACTGGCTCTCATGTTGTGGCCGATGCCATGTCCCAGACATGGTCTTACA
*
24967544 CTGGCTCTCATATC
66 CTAGCTCTCATATC
24967558 TTGGCCAATG
Statistics
Matches: 151, Mismatches: 21, Indels: 6
0.85 0.12 0.03
Matches are distributed among these distances:
95 1 0.01
96 148 0.98
97 2 0.01
ACGTcount: A:0.23, C:0.28, G:0.19, T:0.30
Consensus pattern (96 bp):
CCAAACATGGTCTTACACTGGCTCTCATGTTGTGGCCGATGCCATGTCCCAGACATGGTCTTACA
CTAGCTCTCATATCAATGCTGATGCCATATC
Found at i:24967551 original size:144 final size:144
Alignment explanation
Indices: 24967328--24967606 Score: 382
Period size: 144 Copynumber: 1.9 Consensus size: 144
24967318 GAGGTCGATG
* *
24967328 CCATGTACCAGACATGGTCTTACACTAGCTCTCGTCTTAATGCTGATGCCATATCCCAAACATGG
1 CCATGTACCAGACATGGTCTTACACTAGCTCTCATCTTAATGCCGATGCCATATCCCAAACATGG
* * **
24967393 TCTTACACTGGCTCTCATGT-TGTGGCCGATACCATGTCCCAGACATGGTCTTACACTAGTGCAC
66 TCTTACACTGGCTCTCATATCT-TGGCCAATACCATGTCCCAGACATGGTCTTACACTAGCACAC
24967457 ATATCAATGCTGATT
130 ATATCAATGCTGATT
* * * * * * *
24967472 CCATGTCCCAGACATTGTCTTACATTGGCTCTCATGTT-GTAGCCGATGCCATGTCCCAAACATG
1 CCATGTACCAGACATGGTCTTACACTAGCTCTCATCTTAAT-GCCGATGCCATATCCCAAACATG
* * *
24967536 GTCTTACACTGGCTCTCATATCTTGGCCAATGCCATGTCCCCGACATGGTCTTATACTAGCACAC
65 GTCTTACACTGGCTCTCATATCTTGGCCAATACCATGTCCCAGACATGGTCTTACACTAGCACAC
24967601 ATATCA
130 ATATCA
24967607 CCCAACTGTC
Statistics
Matches: 117, Mismatches: 16, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
143 1 0.01
144 115 0.98
145 1 0.01
ACGTcount: A:0.24, C:0.29, G:0.18, T:0.30
Consensus pattern (144 bp):
CCATGTACCAGACATGGTCTTACACTAGCTCTCATCTTAATGCCGATGCCATATCCCAAACATGG
TCTTACACTGGCTCTCATATCTTGGCCAATACCATGTCCCAGACATGGTCTTACACTAGCACACA
TATCAATGCTGATT
Found at i:24967572 original size:96 final size:95
Alignment explanation
Indices: 24967323--24967589 Score: 322
Period size: 96 Copynumber: 2.8 Consensus size: 95
24967313 ATGTCGAGGT
* * * * *
24967323 CGATGCCATGTACCAGACATGGTCTTACACTAGCTCTCGTCT-TAATGCTGATGCCATATCCCAA
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATCT--TGCTGATGCCATGTCCCAG
*
24967387 ACATGGTCTTACACTGGCTCTCATGTTGTGGC
64 ACATGGTCTTACACTGGCTCTCATGTTGTAGC
* * * *
24967419 CGATACCATGTCCCAGACATGGTCTTACACTAG-TGCACATATCAATGCTGATTCCATGTCCCAG
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCT-CTCATATC-TTGCTGATGCCATGTCCCAG
* *
24967483 ACATTGTCTTACATTGGCTCTCATGTTGTAGC
64 ACATGGTCTTACACTGGCTCTCATGTTGTAGC
* * ** *
24967515 CGATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCATATCTTGGCCAATGCCATGTCCCCGA
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATCTT-GCTGATGCCATGTCCCAGA
24967580 CATGGTCTTA
65 CATGGTCTTA
24967590 TACTAGCACA
Statistics
Matches: 144, Mismatches: 22, Indels: 10
0.82 0.12 0.06
Matches are distributed among these distances:
95 2 0.01
96 141 0.98
97 1 0.01
ACGTcount: A:0.22, C:0.29, G:0.19, T:0.30
Consensus pattern (95 bp):
CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATCTTGCTGATGCCATGTCCCAGAC
ATGGTCTTACACTGGCTCTCATGTTGTAGC
Found at i:24969734 original size:35 final size:34
Alignment explanation
Indices: 24969695--24969770 Score: 120
Period size: 32 Copynumber: 2.3 Consensus size: 34
24969685 AACCTTTAAT
24969695 TCTCCTTCTAATTGCCATAGTCGTTCCTCACCCCC
1 TCTCCTTCT-ATTGCCATAGTCGTTCCTCACCCCC
24969730 TCTCC-T-TATTGCCATAGTCGTTCCTCACCCCC
1 TCTCCTTCTATTGCCATAGTCGTTCCTCACCCCC
*
24969762 TCTCTTTCT
1 TCTCCTTCT
24969771 CTTTGATTTT
Statistics
Matches: 38, Mismatches: 1, Indels: 5
0.86 0.02 0.11
Matches are distributed among these distances:
32 29 0.76
33 2 0.05
34 2 0.05
35 5 0.13
ACGTcount: A:0.12, C:0.42, G:0.08, T:0.38
Consensus pattern (34 bp):
TCTCCTTCTATTGCCATAGTCGTTCCTCACCCCC
Found at i:24969743 original size:32 final size:32
Alignment explanation
Indices: 24969705--24969765 Score: 122
Period size: 32 Copynumber: 1.9 Consensus size: 32
24969695 TCTCCTTCTA
24969705 ATTGCCATAGTCGTTCCTCACCCCCTCTCCTT
1 ATTGCCATAGTCGTTCCTCACCCCCTCTCCTT
24969737 ATTGCCATAGTCGTTCCTCACCCCCTCTC
1 ATTGCCATAGTCGTTCCTCACCCCCTCTC
24969766 TTTCTCTTTG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 29 1.00
ACGTcount: A:0.13, C:0.44, G:0.10, T:0.33
Consensus pattern (32 bp):
ATTGCCATAGTCGTTCCTCACCCCCTCTCCTT
Found at i:24973502 original size:23 final size:23
Alignment explanation
Indices: 24973471--24973515 Score: 72
Period size: 23 Copynumber: 2.0 Consensus size: 23
24973461 GGGAAAATTT
*
24973471 TTTATATTTTTAAAAAGAAAAAG
1 TTTAGATTTTTAAAAAGAAAAAG
*
24973494 TTTAGATTTTTAAAAATAAAAA
1 TTTAGATTTTTAAAAAGAAAAA
24973516 TTTTTTTAGT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.53, C:0.00, G:0.07, T:0.40
Consensus pattern (23 bp):
TTTAGATTTTTAAAAAGAAAAAG
Found at i:24974969 original size:14 final size:14
Alignment explanation
Indices: 24974950--24974979 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
24974940 TGATGGGTTC
24974950 AACGTTATTAATTA
1 AACGTTATTAATTA
24974964 AACGTTATTAATTA
1 AACGTTATTAATTA
24974978 AA
1 AA
24974980 TCTTTTAAGA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.47, C:0.07, G:0.07, T:0.40
Consensus pattern (14 bp):
AACGTTATTAATTA
Found at i:24977097 original size:19 final size:19
Alignment explanation
Indices: 24977073--24977113 Score: 82
Period size: 19 Copynumber: 2.2 Consensus size: 19
24977063 TAAGCTATCA
24977073 CAACTTAGTAAATTTTAAG
1 CAACTTAGTAAATTTTAAG
24977092 CAACTTAGTAAATTTTAAG
1 CAACTTAGTAAATTTTAAG
24977111 CAA
1 CAA
24977114 ACAAACAATC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.44, C:0.12, G:0.10, T:0.34
Consensus pattern (19 bp):
CAACTTAGTAAATTTTAAG
Found at i:24978816 original size:14 final size:14
Alignment explanation
Indices: 24978797--24978840 Score: 52
Period size: 14 Copynumber: 3.0 Consensus size: 14
24978787 CATAACTTAT
24978797 ATTATATACATATA
1 ATTATATACATATA
* *
24978811 ATTATATACATTTT
1 ATTATATACATATA
24978825 ATTATTATAACATATA
1 ATTA-TAT-ACATATA
24978841 TATATTGTAT
Statistics
Matches: 24, Mismatches: 4, Indels: 2
0.80 0.13 0.07
Matches are distributed among these distances:
14 16 0.67
15 3 0.12
16 5 0.21
ACGTcount: A:0.45, C:0.07, G:0.00, T:0.48
Consensus pattern (14 bp):
ATTATATACATATA
Found at i:24986934 original size:58 final size:57
Alignment explanation
Indices: 24986822--24986935 Score: 167
Period size: 58 Copynumber: 2.0 Consensus size: 57
24986812 TTAGAACTCA
* * **
24986822 TAACACATTTAGAGAATTTTGTGTTACATTTTGACGGTTCTTTATTTTTGGGTTTTC
1 TAACACATTTAGAGAATTTTGAGTTACATTTTGAAGGTTCTTTATTTTCAGGTTTTC
24986879 TAACACATTTAGAGAATTTTGAGTTTA-AGTTTTGAAGGTTCTTTATTTTCAGGTTTT
1 TAACACATTTAGAGAATTTTGAG-TTACA-TTTTGAAGGTTCTTTATTTTCAGGTTTT
24986936 TTGAGTTTAG
Statistics
Matches: 51, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
57 23 0.45
58 28 0.55
ACGTcount: A:0.24, C:0.09, G:0.18, T:0.50
Consensus pattern (57 bp):
TAACACATTTAGAGAATTTTGAGTTACATTTTGAAGGTTCTTTATTTTCAGGTTTTC
Found at i:24990957 original size:67 final size:67
Alignment explanation
Indices: 24990849--24991033 Score: 345
Period size: 67 Copynumber: 2.8 Consensus size: 67
24990839 TTAACAAAAC
24990849 TTTTCTCTCATTTTCTCTCTTGCCAAACACTACTTTTTTTCTTCAAAATATTTGGTTGTTGCCAT
1 TTTTCTCTCATTTTCTCTCTTGCCAAACACTACTTTTTTTCTTCAAAATATTTGGTTGTTGCCAT
24990914 TT
66 TT
24990916 TTTTCTCTCATTTTCTCTCTTGCCAAACACTACTTTTTTTCTTCAAAATATTTGGTTGTTGCCAT
1 TTTTCTCTCATTTTCTCTCTTGCCAAACACTACTTTTTTTCTTCAAAATATTTGGTTGTTGCCAT
24990981 TT
66 TT
*
24990983 TTTTCTCTCATTTTCTCTCTTGCCAAACACCA-TTTTTGTTCTTCAAAATAT
1 TTTTCTCTCATTTTCTCTCTTGCCAAACACTACTTTTT-TTCTTCAAAATAT
24991034 ATGATTGGCT
Statistics
Matches: 116, Mismatches: 1, Indels: 2
0.97 0.01 0.02
Matches are distributed among these distances:
66 5 0.04
67 111 0.96
ACGTcount: A:0.19, C:0.23, G:0.06, T:0.51
Consensus pattern (67 bp):
TTTTCTCTCATTTTCTCTCTTGCCAAACACTACTTTTTTTCTTCAAAATATTTGGTTGTTGCCAT
TT
Found at i:24993319 original size:16 final size:16
Alignment explanation
Indices: 24993298--24993330 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
24993288 GAATTATATG
24993298 TATGTGATTTGTATAA
1 TATGTGATTTGTATAA
24993314 TATGTGATTTGTATAA
1 TATGTGATTTGTATAA
24993330 T
1 T
24993331 TTTCATGTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.30, C:0.00, G:0.18, T:0.52
Consensus pattern (16 bp):
TATGTGATTTGTATAA
Found at i:24993523 original size:25 final size:25
Alignment explanation
Indices: 24993476--24993536 Score: 70
Period size: 25 Copynumber: 2.4 Consensus size: 25
24993466 TTGTAACTCT
* * *
24993476 TGAGAGCTTACTGATTTACAGCTTG
1 TGAGAGCATACTGATTCACAGCTCG
*
24993501 TGAGAGCATACTGATTCATAGCTCG
1 TGAGAGCATACTGATTCACAGCTCG
24993526 T-ATGAGCATAC
1 TGA-GAGCATAC
24993537 ATGTACAAGA
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
24 1 0.03
25 30 0.97
ACGTcount: A:0.28, C:0.18, G:0.23, T:0.31
Consensus pattern (25 bp):
TGAGAGCATACTGATTCACAGCTCG
Found at i:24998683 original size:80 final size:80
Alignment explanation
Indices: 24998531--24998709 Score: 188
Period size: 80 Copynumber: 2.2 Consensus size: 80
24998521 TTGAATGATG
*
24998531 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTT
**
24998596 GTGCGAGTTA-CTAAA
66 GAACGAG-TAGCTAAA
* * * * *
24998611 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAAT-CGGGCTATG-TCCCGAAGGCA
1 TCCGGGTTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCAT-ATCCGGACTAAGAT-CCGAAGGCA
*
24998673 TTTGAACGAGTAGCTATA
63 TTTGAACGAGTAGCTAAA
* *
24998691 TCC-GGTTAAATTCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
24998710 TACGTGATTT
Statistics
Matches: 84, Mismatches: 11, Indels: 9
0.81 0.11 0.09
Matches are distributed among these distances:
79 17 0.20
80 58 0.69
81 9 0.11
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (80 bp):
TCCGGGTTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTT
GAACGAGTAGCTAAA
Found at i:24998690 original size:40 final size:41
Alignment explanation
Indices: 24998531--24998676 Score: 185
Period size: 40 Copynumber: 3.6 Consensus size: 41
24998521 TTGAATGATG
* * *
24998531 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCAT-A
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
*
24998571 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTA-AA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATAA
*
24998611 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
24998652 T-CGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
24998677 AACGAGTAGC
Statistics
Matches: 93, Mismatches: 8, Indels: 10
0.84 0.07 0.09
Matches are distributed among these distances:
39 1 0.01
40 81 0.87
41 11 0.12
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.27
Consensus pattern (41 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:25005490 original size:30 final size:30
Alignment explanation
Indices: 25005454--25005515 Score: 115
Period size: 30 Copynumber: 2.1 Consensus size: 30
25005444 TCAAGGCATG
25005454 TAAATGCGTTCAAGGGTACTGAAGTACATA
1 TAAATGCGTTCAAGGGTACTGAAGTACATA
*
25005484 TAAATGCGTTCAAGGGTATTGAAGTACATA
1 TAAATGCGTTCAAGGGTACTGAAGTACATA
25005514 TA
1 TA
25005516 GGGCACGTAT
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.37, C:0.11, G:0.23, T:0.29
Consensus pattern (30 bp):
TAAATGCGTTCAAGGGTACTGAAGTACATA
Found at i:25005556 original size:39 final size:40
Alignment explanation
Indices: 25005497--25005574 Score: 104
Period size: 39 Copynumber: 2.0 Consensus size: 40
25005487 ATGCGTTCAA
* * * *
25005497 GGGTATTGAAGTACATATAGG-GCACGTATGTGCAATCAG
1 GGGTACTGAAATACAAATAGGAGCACGTATATGCAATCAG
*
25005536 GGGTACTGAAATACAAATAGGAGCACGTATATGCCATCA
1 GGGTACTGAAATACAAATAGGAGCACGTATATGCAATCA
25005575 TCTAATTATT
Statistics
Matches: 33, Mismatches: 5, Indels: 1
0.85 0.13 0.03
Matches are distributed among these distances:
39 18 0.55
40 15 0.45
ACGTcount: A:0.35, C:0.15, G:0.27, T:0.23
Consensus pattern (40 bp):
GGGTACTGAAATACAAATAGGAGCACGTATATGCAATCAG
Found at i:25009334 original size:15 final size:15
Alignment explanation
Indices: 25009314--25009342 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
25009304 AATGGACATT
25009314 TATGGAAATCATTAG
1 TATGGAAATCATTAG
25009329 TATGGAAATCATTA
1 TATGGAAATCATTA
25009343 ATAAGTGCAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.41, C:0.07, G:0.17, T:0.34
Consensus pattern (15 bp):
TATGGAAATCATTAG
Found at i:25011844 original size:42 final size:42
Alignment explanation
Indices: 25011785--25011871 Score: 156
Period size: 42 Copynumber: 2.1 Consensus size: 42
25011775 ATGTGATCTT
*
25011785 TGTATGTGGCTATGGAACTGAAAGTTGAATGCTCGATAAGCA
1 TGTATGAGGCTATGGAACTGAAAGTTGAATGCTCGATAAGCA
*
25011827 TGTATGAGGCTATGGAACTGAAAGTTGAATGGTCGATAAGCA
1 TGTATGAGGCTATGGAACTGAAAGTTGAATGCTCGATAAGCA
25011869 TGT
1 TGT
25011872 TGTGTTTGTA
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
42 43 1.00
ACGTcount: A:0.31, C:0.10, G:0.30, T:0.29
Consensus pattern (42 bp):
TGTATGAGGCTATGGAACTGAAAGTTGAATGCTCGATAAGCA
Found at i:25012955 original size:40 final size:40
Alignment explanation
Indices: 25011951--25012946 Score: 1769
Period size: 40 Copynumber: 24.9 Consensus size: 40
25011941 ATTGAGAGTT
* * * *
25011951 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTG
1 ATATGTCCGGGCTAAGTTCCAAAGAGCATTCGTGCTGGTA
* * *
25011991 TTATATCCGGGCTAAG-TCCTGAAGAGCATTCGTGCTGGTA
1 ATATGTCCGGGCTAAGTTCC-AAAGAGCATTCGTGCTGGTA
25012031 ATATGTCCGGGCTAAGTTCCAAAGAGCATTCGTGCTGGTA
1 ATATGTCCGGGCTAAGTTCCAAAGAGCATTCGTGCTGGTA
25012071 ATATGTCCGGGCTAAGTTCCAAAGAGCATTCGTGCTGGTA
1 ATATGTCCGGGCTAAGTTCCAAAGAGCATTCGTGCTGGTA
25012111 ATATGTCCGGGCTAAGTTCCAAAGAGCATTCGTGCTGGTA
1 ATATGTCCGGGCTAAGTTCCAAAGAGCATTCGTGCTGGTA
25012151 ATATGTCCGGGCTAAGTTCCAAAGAGCATTCGTGCTGGTA
1 ATATGTCCGGGCTAAGTTCCAAAGAGCATTCGTGCTGGTA
25012191 ATATGTCCGGGCTAAGTTCCAAAGAGCATTCGTGCTGGTA
1 ATATGTCCGGGCTAAGTTCCAAAGAGCATTCGTGCTGGTA
25012231 ATATGTCCGGGCTAAGTTCCAAAGAGCATTCGTGCTGGTA
1 ATATGTCCGGGCTAAGTTCCAAAGAGCATTCGTGCTGGTA
25012271 ATATGTCCGGGCTAAGTTCCAAAGAGCATTCGTGCTGGTA
1 ATATGTCCGGGCTAAGTTCCAAAGAGCATTCGTGCTGGTA
25012311 ATATGTCCGGGCTAAGTTCCAAAGAGCATTCGTGCTGGTA
1 ATATGTCCGGGCTAAGTTCCAAAGAGCATTCGTGCTGGTA
25012351 ATATGTCCGGGCTAAGTTCCAAAGAGCATTCGTGCTGGTA
1 ATATGTCCGGGCTAAGTTCCAAAGAGCATTCGTGCTGGTA
25012391 ATATGTCCGGGCTAAGTTCCAAAGAGCATTCGTGCTGGTA
1 ATATGTCCGGGCTAAGTTCCAAAGAGCATTCGTGCTGGTA
25012431 ATATGTCCGGGCTAAGTTCCAAAGAGCATTCGTGCTGGTA
1 ATATGTCCGGGCTAAGTTCCAAAGAGCATTCGTGCTGGTA
25012471 ATATGTCCGGGCTAAGTTCCAAAGAGCATTCGTGCTGGTA
1 ATATGTCCGGGCTAAGTTCCAAAGAGCATTCGTGCTGGTA
25012511 ATATGTCCGGGCTAAGTTCCAAAGAGCATTCGTGCTGGTA
1 ATATGTCCGGGCTAAGTTCCAAAGAGCATTCGTGCTGGTA
25012551 ATATGTCCGGGCTAAGTTCCAAAGAGCATTCGTGCTGGTA
1 ATATGTCCGGGCTAAGTTCCAAAGAGCATTCGTGCTGGTA
25012591 ATATGTCCGGGCTAAGTTCCAAAGAGCATTCGTGCTGGTA
1 ATATGTCCGGGCTAAGTTCCAAAGAGCATTCGTGCTGGTA
25012631 ATATGTCCGGGCTAAGTTCCAAAGAGCATTCGTGCTGGTA
1 ATATGTCCGGGCTAAGTTCCAAAGAGCATTCGTGCTGGTA
25012671 ATATGTCCGGGCTAAGTTCCAAAGAGCATTCGTGCTGGTA
1 ATATGTCCGGGCTAAGTTCCAAAGAGCATTCGTGCTGGTA
25012711 ATATGTCCGGGCTAAGTTCCAAAGAGCATTCGTGCTGGTA
1 ATATGTCCGGGCTAAGTTCCAAAGAGCATTCGTGCTGGTA
25012751 ATATGTCCGGGCTAAGTTCCAAAGAGCATTCGTGCTGGTA
1 ATATGTCCGGGCTAAGTTCCAAAGAGCATTCGTGCTGGTA
* * * *
25012791 ATATGTCCGGGCTAAGTTTCGAAGAGCATTCGTGCTAGTG
1 ATATGTCCGGGCTAAGTTCCAAAGAGCATTCGTGCTGGTA
* * * *
25012831 ATATATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTG
1 ATATGTCCGGGCTAAGTTCCAAAGAGCATTCGTGCTGGTA
* * * *
25012871 ATATATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTG
1 ATATGTCCGGGCTAAGTTCCAAAGAGCATTCGTGCTGGTA
** * *
25012911 ATATAACCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 ATATGTCCGGGCTAAGTTCCAAAGAGCATTCGTGCT
25012947 AGTGATATAT
Statistics
Matches: 940, Mismatches: 14, Indels: 4
0.98 0.01 0.00
Matches are distributed among these distances:
39 2 0.00
40 935 0.99
41 3 0.00
ACGTcount: A:0.25, C:0.20, G:0.28, T:0.27
Consensus pattern (40 bp):
ATATGTCCGGGCTAAGTTCCAAAGAGCATTCGTGCTGGTA
Found at i:25013083 original size:57 final size:57
Alignment explanation
Indices: 25012993--25013118 Score: 150
Period size: 57 Copynumber: 2.2 Consensus size: 57
25012983 GCTAGAATTA
*
25012993 TGAGGCACTGTGTGTGCAAGTTCTCCAACCGAGCACTATGTGTGCCAGATCAGTAGT
1 TGAGGCACTGTGTGTGCAAGTTCTCCAACCGAGCACTATGTGTGCCAAATCAGTAGT
* ** * * *
25013050 TGAGGCACTAG-GTGTGCGAGTTCTTTAATCGAGCGCTATGTGTGCGAAATCAGTCAG-
1 TGAGGCACT-GTGTGTGCAAGTTCTCCAACCGAGCACTATGTGTGCCAAATCAGT-AGT
25013107 TG-GGCACTGTGT
1 TGAGGCACTGTGT
25013119 ATGCGAAATG
Statistics
Matches: 59, Mismatches: 7, Indels: 7
0.81 0.10 0.10
Matches are distributed among these distances:
55 1 0.02
56 8 0.14
57 47 0.80
58 3 0.05
ACGTcount: A:0.21, C:0.20, G:0.31, T:0.28
Consensus pattern (57 bp):
TGAGGCACTGTGTGTGCAAGTTCTCCAACCGAGCACTATGTGTGCCAAATCAGTAGT
Found at i:25017031 original size:18 final size:19
Alignment explanation
Indices: 25016987--25017037 Score: 70
Period size: 18 Copynumber: 2.8 Consensus size: 19
25016977 GTAGTAGTGG
25016987 CAGTAATCAGTGCAGTAAC
1 CAGTAATCAGTGCAGTAAC
* *
25017006 CA-TGATCAATGCAGTAA-
1 CAGTAATCAGTGCAGTAAC
25017023 CAGTAATCAGTGCAG
1 CAGTAATCAGTGCAG
25017038 AATGCAAACA
Statistics
Matches: 27, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
17 2 0.07
18 23 0.85
19 2 0.07
ACGTcount: A:0.37, C:0.20, G:0.22, T:0.22
Consensus pattern (19 bp):
CAGTAATCAGTGCAGTAAC
Found at i:25017326 original size:23 final size:23
Alignment explanation
Indices: 25017271--25017326 Score: 62
Period size: 23 Copynumber: 2.4 Consensus size: 23
25017261 TATCCCACCC
25017271 CATGCAATGCAACATAATATCATA
1 CATGC-ATGCAACATAATATCATA
*
25017295 CATGGATGCAACATACATAT-A-A
1 CATGCATGCAACATA-ATATCATA
25017317 CATGACATGC
1 CATG-CATGC
25017327 TTAAATATAG
Statistics
Matches: 28, Mismatches: 2, Indels: 5
0.80 0.06 0.14
Matches are distributed among these distances:
22 5 0.18
23 15 0.54
24 8 0.29
ACGTcount: A:0.43, C:0.21, G:0.12, T:0.23
Consensus pattern (23 bp):
CATGCATGCAACATAATATCATA
Found at i:25017445 original size:27 final size:27
Alignment explanation
Indices: 25017409--25017476 Score: 93
Period size: 27 Copynumber: 2.5 Consensus size: 27
25017399 TACAAAGGTG
* * *
25017409 TTTCTGTCATTTTACCCTATGGGGGTA
1 TTTCAGTCATTTTACCCAATGAGGGTA
25017436 TTTC-GATCATTTTACCCAATGAGGGTA
1 TTTCAG-TCATTTTACCCAATGAGGGTA
25017463 TTTCAGTCATTTTA
1 TTTCAGTCATTTTA
25017477 TCACATGAGG
Statistics
Matches: 37, Mismatches: 2, Indels: 4
0.86 0.05 0.09
Matches are distributed among these distances:
26 1 0.03
27 35 0.95
28 1 0.03
ACGTcount: A:0.21, C:0.18, G:0.18, T:0.44
Consensus pattern (27 bp):
TTTCAGTCATTTTACCCAATGAGGGTA
Found at i:25017498 original size:27 final size:27
Alignment explanation
Indices: 25017468--25017545 Score: 120
Period size: 27 Copynumber: 2.9 Consensus size: 27
25017458 GGGTATTTCA
*
25017468 GTCATTTTATCACATGAGGGCAAAATC
1 GTCATTTTATCACATAAGGGCAAAATC
* *
25017495 GTCATTTTATCACGTAAGGGAAAAATC
1 GTCATTTTATCACATAAGGGCAAAATC
*
25017522 GTCATTTTATCACATAAAGGCAAA
1 GTCATTTTATCACATAAGGGCAAA
25017546 TAACTATTTT
Statistics
Matches: 45, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 45 1.00
ACGTcount: A:0.37, C:0.17, G:0.17, T:0.29
Consensus pattern (27 bp):
GTCATTTTATCACATAAGGGCAAAATC
Found at i:25018351 original size:12 final size:12
Alignment explanation
Indices: 25018336--25018387 Score: 50
Period size: 12 Copynumber: 4.3 Consensus size: 12
25018326 CCTTGATTTT
25018336 CTCCTAAAATCC
1 CTCCTAAAATCC
* * *
25018348 CTCCTCATATCT
1 CTCCTAAAATCC
* *
25018360 CTCCTCAACTCC
1 CTCCTAAAATCC
*
25018372 CTCCTACAATCC
1 CTCCTAAAATCC
25018384 CTCC
1 CTCC
25018388 ATGACCAATT
Statistics
Matches: 31, Mismatches: 9, Indels: 0
0.77 0.22 0.00
Matches are distributed among these distances:
12 31 1.00
ACGTcount: A:0.21, C:0.50, G:0.00, T:0.29
Consensus pattern (12 bp):
CTCCTAAAATCC
Found at i:25018387 original size:24 final size:24
Alignment explanation
Indices: 25018336--25018387 Score: 61
Period size: 24 Copynumber: 2.2 Consensus size: 24
25018326 CCTTGATTTT
*
25018336 CTCCTAAAATCCCTCCTCATATCT
1 CTCCTAAAATCCCTCCTCATATCC
* *
25018360 CTCCTCAACTCCCTCCTACA-ATCC
1 CTCCTAAAATCCCTCCT-CATATCC
25018384 CTCC
1 CTCC
25018388 ATGACCAATT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
24 22 0.92
25 2 0.08
ACGTcount: A:0.21, C:0.50, G:0.00, T:0.29
Consensus pattern (24 bp):
CTCCTAAAATCCCTCCTCATATCC
Found at i:25025406 original size:47 final size:47
Alignment explanation
Indices: 25025337--25025598 Score: 283
Period size: 47 Copynumber: 5.6 Consensus size: 47
25025327 GCCCCTAAGT
*
25025337 GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATTTCAC
1 GAACTCGGACTCAACCCAACGAGTTCGGATGCCTAGTTACATTTCAC
* * * *
25025384 GAACTCGGACTCAACCCAACGAGTTCGGA---C-A-TTCGCATCCATAAGT
1 GAACTCGGACTCAACCCAACGAGTTCGGATGCCTAGTT-ACAT--TTCA-C
*
25025430 GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATTTCAC
1 GAACTCGGACTCAACCCAACGAGTTCGGATGCCTAGTTACATTTCAC
* * * *
25025477 GAACTCGGACTCAACCCAACGAGTTCGGA---C-A-TTCGCATCCATAAGT
1 GAACTCGGACTCAACCCAACGAGTTCGGATGCCTAGTT-ACAT--TTCA-C
*
25025523 GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATTTCAC
1 GAACTCGGACTCAACCCAACGAGTTCGGATGCCTAGTTACATTTCAC
25025570 GAACTCGGACTCAACCCAACGAGTTCGGA
1 GAACTCGGACTCAACCCAACGAGTTCGGA
25025599 CATTCGCATC
Statistics
Matches: 176, Mismatches: 21, Indels: 36
0.76 0.09 0.15
Matches are distributed among these distances:
42 4 0.02
43 8 0.05
44 2 0.01
45 4 0.02
46 56 0.32
47 84 0.48
48 4 0.02
49 2 0.01
50 8 0.05
51 4 0.02
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (47 bp):
GAACTCGGACTCAACCCAACGAGTTCGGATGCCTAGTTACATTTCAC
Found at i:25025450 original size:46 final size:46
Alignment explanation
Indices: 25025384--25025644 Score: 277
Period size: 46 Copynumber: 5.6 Consensus size: 46
25025374 TACATTTCAC
25025384 GAACTCGGACTCAACCCAACGAGTTCGGACATTCGCATCCATAAGT
1 GAACTCGGACTCAACCCAACGAGTTCGGACATTCGCATCCATAAGT
* * * * *
25025430 GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT--TTCA-C
1 GAACTCGGACTCAACCCAACGAGTTCGGA---C-A-TTCGCATCCATAAGT
25025477 GAACTCGGACTCAACCCAACGAGTTCGGACATTCGCATCCATAAGT
1 GAACTCGGACTCAACCCAACGAGTTCGGACATTCGCATCCATAAGT
* * * * *
25025523 GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT--TTCA-C
1 GAACTCGGACTCAACCCAACGAGTTCGGA---C-A-TTCGCATCCATAAGT
25025570 GAACTCGGACTCAACCCAACGAGTTCGGACATTCGCATCCATAAGT
1 GAACTCGGACTCAACCCAACGAGTTCGGACATTCGCATCCATAAGT
*
25025616 GAACTCGGACTCAACTCAACGAGTTCGGA
1 GAACTCGGACTCAACCCAACGAGTTCGGA
25025645 TTCTCAACCA
Statistics
Matches: 176, Mismatches: 21, Indels: 36
0.76 0.09 0.15
Matches are distributed among these distances:
42 4 0.02
43 8 0.05
44 2 0.01
45 4 0.02
46 84 0.48
47 56 0.32
48 4 0.02
49 2 0.01
50 8 0.05
51 4 0.02
ACGTcount: A:0.30, C:0.29, G:0.20, T:0.21
Consensus pattern (46 bp):
GAACTCGGACTCAACCCAACGAGTTCGGACATTCGCATCCATAAGT
Found at i:25025491 original size:93 final size:93
Alignment explanation
Indices: 25025332--25025645 Score: 628
Period size: 93 Copynumber: 3.4 Consensus size: 93
25025322 AACCCGCCCC
25025332 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATTTCACGAACTCGGACTCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATTTCACGAACTCGGACTCA
25025397 ACCCAACGAGTTCGGACATTCGCATCCA
66 ACCCAACGAGTTCGGACATTCGCATCCA
25025425 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATTTCACGAACTCGGACTCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATTTCACGAACTCGGACTCA
25025490 ACCCAACGAGTTCGGACATTCGCATCCA
66 ACCCAACGAGTTCGGACATTCGCATCCA
25025518 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATTTCACGAACTCGGACTCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATTTCACGAACTCGGACTCA
25025583 ACCCAACGAGTTCGGACATTCGCATCCA
66 ACCCAACGAGTTCGGACATTCGCATCCA
25025611 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGAT
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGAT
25025646 TCTCAACCAT
Statistics
Matches: 221, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
93 221 1.00
ACGTcount: A:0.29, C:0.28, G:0.20, T:0.23
Consensus pattern (93 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATTTCACGAACTCGGACTCA
ACCCAACGAGTTCGGACATTCGCATCCA
Found at i:25025663 original size:46 final size:43
Alignment explanation
Indices: 25025334--25025655 Score: 215
Period size: 47 Copynumber: 7.0 Consensus size: 43
25025324 CCCGCCCCTA
*
25025334 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTA-CATTT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATTCC-A---ACCA-TT
* * * *
25025381 CA-CGAACTCGGACTCAACCCAACGAGTTCGGACATTCGCATCCATA
1 -AGTGAACTCGGACTCAACTCAACGAGTTCGG--ATTC-CAACCATT
*
25025427 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTA-CATTT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATTCC-A---ACCA-TT
* * * *
25025474 CA-CGAACTCGGACTCAACCCAACGAGTTCGGACATTCGCATCCATA
1 -AGTGAACTCGGACTCAACTCAACGAGTTCGG--ATTC-CAACCATT
*
25025520 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTA-CATTT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATTCC-A---ACCA-TT
* * * *
25025567 CA-CGAACTCGGACTCAACCCAACGAGTTCGGACATTCGCATCCATA
1 -AGTGAACTCGGACTCAACTCAACGAGTTCGG--ATTC-CAACCATT
25025613 AGTGAACTCGGACTCAACTCAACGAGTTCGGATTCTCAACCAT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATTC-CAACCAT
25025656 CCTAGTGACA
Statistics
Matches: 218, Mismatches: 29, Indels: 58
0.71 0.10 0.19
Matches are distributed among these distances:
43 2 0.01
44 18 0.08
45 3 0.01
46 88 0.40
47 89 0.41
48 3 0.01
49 12 0.06
50 3 0.01
ACGTcount: A:0.29, C:0.29, G:0.19, T:0.23
Consensus pattern (43 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATTCCAACCATT
Found at i:25029282 original size:81 final size:81
Alignment explanation
Indices: 25029179--25029403 Score: 244
Period size: 81 Copynumber: 2.8 Consensus size: 81
25029169 GGGCATAATC
*
25029179 GTCATTTTACCAC-ACA-AGGGTATTACGATCATTTTACCCTAAAGGGGCATTATGGTCATTTTA
1 GTCATTTTACC-CTACAGA-GGTATTACGATCATTTTACCCTAAAGGGGCATTACGGTCATTTTA
*
25029242 TCTTACAGGGGCATTACGA
64 CCTTACAGGGGCATTA-GA
* * *
25029261 -TCATTTTACCCTACAGAGGTATTACGGTCATTTAACCCTAAAGGGGTATTACGGTCATTTTACC
1 GTCATTTTACCCTACAGAGGTATTACGATCATTTTACCCTAAAGGGGCATTACGGTCATTTTACC
* * *
25029325 TTATAGGGGTATTATA
66 TTACAGGGGCATTAGA
* * * ** * *
25029341 GTCATTTCACCCT-TAGGGGTATTAC-AGTCATTTTACCCTACTGGGGAATTACAGTCATTTTAC
1 GTCATTTTACCCTACAGAGGTATTACGA-TCATTTTACCCTAAAGGGGCATTACGGTCATTTTAC
25029404 AAATCGCGGG
Statistics
Matches: 122, Mismatches: 17, Indels: 10
0.82 0.11 0.07
Matches are distributed among these distances:
80 43 0.35
81 78 0.64
82 1 0.01
ACGTcount: A:0.27, C:0.20, G:0.19, T:0.35
Consensus pattern (81 bp):
GTCATTTTACCCTACAGAGGTATTACGATCATTTTACCCTAAAGGGGCATTACGGTCATTTTACC
TTACAGGGGCATTAGA
Found at i:25029394 original size:27 final size:27
Alignment explanation
Indices: 25029179--25029403 Score: 215
Period size: 27 Copynumber: 8.4 Consensus size: 27
25029169 GGGCATAATC
*
25029179 GTCATTTTACCAC-ACAAGGGTATTAC-
1 GTCATTTTACC-CTACAGGGGTATTACA
* * **
25029205 GATCATTTTACCCTAAAGGGGCATTATG
1 G-TCATTTTACCCTACAGGGGTATTACA
* * *
25029233 GTCATTTTATCTTACAGGGGCATTAC-
1 GTCATTTTACCCTACAGGGGTATTACA
* *
25029259 GATCATTTTACCCTACAGAGGTATTACG
1 G-TCATTTTACCCTACAGGGGTATTACA
* * *
25029287 GTCATTTAACCCTAAAGGGGTATTACG
1 GTCATTTTACCCTACAGGGGTATTACA
* * *
25029314 GTCATTTTACCTTATAGGGGTATTATA
1 GTCATTTTACCCTACAGGGGTATTACA
* *
25029341 GTCATTTCACCCT-TAGGGGTATTACA
1 GTCATTTTACCCTACAGGGGTATTACA
* *
25029367 GTCATTTTACCCTACTGGGGAATTACA
1 GTCATTTTACCCTACAGGGGTATTACA
25029394 GTCATTTTAC
1 GTCATTTTAC
25029404 AAATCGCGGG
Statistics
Matches: 166, Mismatches: 27, Indels: 11
0.81 0.13 0.05
Matches are distributed among these distances:
26 27 0.16
27 137 0.83
28 2 0.01
ACGTcount: A:0.27, C:0.20, G:0.19, T:0.35
Consensus pattern (27 bp):
GTCATTTTACCCTACAGGGGTATTACA
Found at i:25029427 original size:27 final size:27
Alignment explanation
Indices: 25029397--25029471 Score: 91
Period size: 27 Copynumber: 2.8 Consensus size: 27
25029387 AATTACAGTC
*
25029397 ATTTTACAAATCGCGGGTATTTCGGTA
1 ATTTTACAAATCGCGGGTATTTCGATA
25029424 ATTTTAC-AATC-CGGAGGTATTTCGATA
1 ATTTTACAAATCGC-G-GGTATTTCGATA
* *
25029451 ATTTTACAAACCGTGGGTATT
1 ATTTTACAAATCGCGGGTATT
25029472 AGCGACCCAA
Statistics
Matches: 41, Mismatches: 3, Indels: 8
0.79 0.06 0.15
Matches are distributed among these distances:
25 1 0.02
26 5 0.12
27 31 0.76
28 4 0.10
ACGTcount: A:0.28, C:0.15, G:0.20, T:0.37
Consensus pattern (27 bp):
ATTTTACAAATCGCGGGTATTTCGATA
Found at i:25048126 original size:29 final size:29
Alignment explanation
Indices: 25048084--25048142 Score: 118
Period size: 29 Copynumber: 2.0 Consensus size: 29
25048074 CCTTATACTT
25048084 ATATATAACTGTTCATTTACTCCTAACAG
1 ATATATAACTGTTCATTTACTCCTAACAG
25048113 ATATATAACTGTTCATTTACTCCTAACAG
1 ATATATAACTGTTCATTTACTCCTAACAG
25048142 A
1 A
25048143 CTTACTCTTT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.36, C:0.20, G:0.07, T:0.37
Consensus pattern (29 bp):
ATATATAACTGTTCATTTACTCCTAACAG
Found at i:25052023 original size:24 final size:25
Alignment explanation
Indices: 25051969--25052036 Score: 84
Period size: 24 Copynumber: 2.8 Consensus size: 25
25051959 ATCCCGACCT
*
25051969 ACAGCTCGTGTGAGCATTTACATTC
1 ACAGCTCGTGTGAGCATTAACATTC
* * *
25051994 ATAGCTTGTGTGAGCA-TAATATTC
1 ACAGCTCGTGTGAGCATTAACATTC
*
25052018 ACAGCTCGTGTGAGAATTA
1 ACAGCTCGTGTGAGCATTA
25052037 TTATCCCACG
Statistics
Matches: 35, Mismatches: 7, Indels: 2
0.80 0.16 0.05
Matches are distributed among these distances:
24 19 0.54
25 16 0.46
ACGTcount: A:0.28, C:0.18, G:0.22, T:0.32
Consensus pattern (25 bp):
ACAGCTCGTGTGAGCATTAACATTC
Found at i:25054243 original size:14 final size:16
Alignment explanation
Indices: 25054223--25054255 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
25054213 TATGTTTTGC
25054223 AATATATATTTATAAA
1 AATATATATTTATAAA
25054239 AATATATATTTATAAA
1 AATATATATTTATAAA
25054255 A
1 A
25054256 TTTAAAAATA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (16 bp):
AATATATATTTATAAA
Found at i:25055512 original size:13 final size:13
Alignment explanation
Indices: 25055493--25055704 Score: 93
Period size: 12 Copynumber: 17.0 Consensus size: 13
25055483 TGTCATACTA
25055493 AATATATAATAAT
1 AATATATAATAAT
* *
25055506 GATATATAAAAAT
1 AATATATAATAAT
*
25055519 AATATTTAATAAT
1 AATATATAATAAT
*
25055532 AAT-T-T-GT-A-
1 AATATATAATAAT
*
25055540 AAT-TTTAA-AAT
1 AATATATAATAAT
*
25055551 TATATATAATAAT
1 AATATATAATAAT
25055564 AA-ATAATAAGATAACAT
1 AATAT-AT-A-AT-A-AT
25055581 AATATATAATAA-
1 AATATATAATAAT
*
25055593 AATA-AGAAATGAAT
1 AATATA-TAAT-AAT
25055607 AATATAT-ATAAT
1 AATATATAATAAT
* *
25055619 AA-A-ATGAT-TT
1 AATATATAATAAT
25055629 AATATATAATAA-
1 AATATATAATAAT
25055641 AATATATAATAA-
1 AATATATAATAAT
25055653 AATATA-AATAAT
1 AATATATAATAAT
*
25055665 -ATA-ACAAATAAT
1 AATATA-TAATAAT
* *
25055677 ACATAAATAAAAAT
1 A-ATATATAATAAT
25055691 ATATATATAATAAT
1 A-ATATATAATAAT
25055705 TTTTAAATGT
Statistics
Matches: 153, Mismatches: 20, Indels: 51
0.68 0.09 0.23
Matches are distributed among these distances:
8 4 0.03
9 2 0.01
10 8 0.05
11 16 0.10
12 47 0.31
13 35 0.23
14 25 0.16
15 6 0.04
16 2 0.01
17 6 0.04
18 2 0.01
ACGTcount: A:0.61, C:0.01, G:0.03, T:0.35
Consensus pattern (13 bp):
AATATATAATAAT
Found at i:25055584 original size:20 final size:20
Alignment explanation
Indices: 25055559--25055610 Score: 61
Period size: 20 Copynumber: 2.6 Consensus size: 20
25055549 ATTATATATA
*
25055559 ATAATAAATAATAAGATAAC
1 ATAATAAATAATAAAATAAC
* *
25055579 ATAATATATAATAAAATAAG
1 ATAATAAATAATAAAATAAC
*
25055599 A-AATGAATAATA
1 ATAATAAATAATA
25055611 TATATAATAA
Statistics
Matches: 27, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
19 9 0.33
20 18 0.67
ACGTcount: A:0.65, C:0.02, G:0.06, T:0.27
Consensus pattern (20 bp):
ATAATAAATAATAAAATAAC
Found at i:25055595 original size:28 final size:28
Alignment explanation
Indices: 25055547--25055703 Score: 82
Period size: 28 Copynumber: 5.6 Consensus size: 28
25055537 GTAAATTTTA
* *
25055547 AAATTATATATAATAAT-AAATAATAAGAT
1 AAATAATATAT-ATAATAAAATAAGAA-AT
25055576 AACAT-A-ATATATAATAAAATAAGAAAT
1 AA-ATAATATATATAATAAAATAAGAAAT
* **
25055603 GAATAATATATATAATAAAATGATTTAATAT
1 AAATAATATATATAATAAAAT-A-AGAA-AT
* *
25055634 ATAATAAAATATATAATAAAAT-ATAAAT
1 A-AATAATATATATAATAAAATAAGAAAT
* *
25055662 AATATAACA-A-ATAAT-ACATAA-ATAA-
1 AA-ATAATATATATAATAAAATAAGA-AAT
25055687 AAAT-ATATATATAATAA
1 AAATAATATATATAATAA
25055704 TTTTTAAATG
Statistics
Matches: 104, Mismatches: 10, Indels: 31
0.72 0.07 0.21
Matches are distributed among these distances:
23 2 0.02
24 3 0.03
25 11 0.11
26 11 0.11
27 11 0.11
28 34 0.33
29 7 0.07
30 4 0.04
31 2 0.02
32 19 0.18
ACGTcount: A:0.64, C:0.02, G:0.03, T:0.32
Consensus pattern (28 bp):
AAATAATATATATAATAAAATAAGAAAT
Found at i:25055718 original size:81 final size:80
Alignment explanation
Indices: 25055539--25055751 Score: 181
Period size: 81 Copynumber: 2.6 Consensus size: 80
25055529 AATAATTTGT
* * * *
25055539 AAATTTTAAAATTATATATAATAATAAATAATAAGATA-ACATAATATATAATAAAATAAGAAAT
1 AAATTTTTAAATTATA-ATAA-AATATATAATAAAATATAAATAATATATAATAAAATAAGAAAT
*
25055603 GAATAATATATATAATA
64 GAAAAATATATATAATA
* *
25055620 AAATGATTT-AATATATAATAAAATATATAATAAAATATAAATAATATA-ACA-AATAATACATA
1 AAAT-TTTTAAAT-TATAATAAAATATATAATAAAATATAAATAATATATA-ATAA-AATA-AGA
25055682 AAT-AAAAATATATAT-ATA
61 AATGAAAAATATATATAATA
* * *
25055700 ATAATTTTTAAATGTATAA-ATAATGGTTATAATAAAA-ATAAATGATATATAA
1 A-AATTTTTAAAT-TATAATAAAAT--ATATAATAAAATATAAATAATATATAA
25055752 AACATTTTAA
Statistics
Matches: 109, Mismatches: 12, Indels: 22
0.76 0.08 0.15
Matches are distributed among these distances:
80 28 0.26
81 59 0.54
82 22 0.20
ACGTcount: A:0.61, C:0.01, G:0.04, T:0.34
Consensus pattern (80 bp):
AAATTTTTAAATTATAATAAAATATATAATAAAATATAAATAATATATAATAAAATAAGAAATGA
AAAATATATATAATA
Found at i:25055785 original size:14 final size:14
Alignment explanation
Indices: 25055739--25055786 Score: 51
Period size: 14 Copynumber: 3.4 Consensus size: 14
25055729 TAATAAAAAT
*
25055739 AAATGATATATAAA
1 AAATTATATATAAA
* * *
25055753 ACATTTTAAATAAA
1 AAATTATATATAAA
25055767 TAAATTATATATAAA
1 -AAATTATATATAAA
25055782 AAATT
1 AAATT
25055787 TAAAAAGGAT
Statistics
Matches: 26, Mismatches: 7, Indels: 2
0.74 0.20 0.06
Matches are distributed among these distances:
14 15 0.58
15 11 0.42
ACGTcount: A:0.60, C:0.02, G:0.02, T:0.35
Consensus pattern (14 bp):
AAATTATATATAAA
Found at i:25057323 original size:45 final size:45
Alignment explanation
Indices: 25057274--25057420 Score: 149
Period size: 45 Copynumber: 3.3 Consensus size: 45
25057264 GAGACACCAA
*
25057274 ATCTGCTATCTTTGATCTGCTTCGATGTAAACACACGAATGTCAG
1 ATCTGCTATCTTCGATCTGCTTCGATGTAAACACACGAATGTCAG
* * * * * *
25057319 ATCTGCTATCTTCGATCTGCTCCCCG-TCT-AATACA-GAGACGCCAA
1 ATCTGCTATCTTCGATCTGCT--TCGATGTAAACACACGA-ATGTCAG
* *
25057364 ATATG-TCATCTTCGATCTGCTTCAATGTAAACACACGAATGTCAG
1 ATCTGCT-ATCTTCGATCTGCTTCGATGTAAACACACGAATGTCAG
25057409 ATCTGCTATCTT
1 ATCTGCTATCTT
25057421 GATGGACTGT
Statistics
Matches: 78, Mismatches: 16, Indels: 16
0.71 0.15 0.15
Matches are distributed among these distances:
43 1 0.01
44 5 0.06
45 65 0.83
46 5 0.06
47 2 0.03
ACGTcount: A:0.27, C:0.26, G:0.16, T:0.32
Consensus pattern (45 bp):
ATCTGCTATCTTCGATCTGCTTCGATGTAAACACACGAATGTCAG
Found at i:25057392 original size:90 final size:90
Alignment explanation
Indices: 25057236--25057420 Score: 282
Period size: 90 Copynumber: 2.1 Consensus size: 90
25057226 CCATGTTAAC
* * * * *
25057236 ATCTTTGAGCTGCTCCCCGTCAAATATAGAGACACCAAATCTGCTATCTTTGATCTGCTTCGATG
1 ATCTTCGAGCTGCTCCCCGTCAAATACAGAGACACCAAATATGCTATCTTCGATCTGCTTCAATG
25057301 TAAACACACGAATGTCAGATCTGCT
66 TAAACACACGAATGTCAGATCTGCT
* * *
25057326 ATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAAATATG-TCATCTTCGATCTGCTTCAAT
1 ATCTTCGAGCTGCTCCCCGTCAAATACAGAGACACCAAATATGCT-ATCTTCGATCTGCTTCAAT
25057390 GTAAACACACGAATGTCAGATCTGCT
65 GTAAACACACGAATGTCAGATCTGCT
25057416 ATCTT
1 ATCTT
25057421 GATGGACTGT
Statistics
Matches: 86, Mismatches: 8, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
89 1 0.01
90 85 0.99
ACGTcount: A:0.28, C:0.26, G:0.16, T:0.30
Consensus pattern (90 bp):
ATCTTCGAGCTGCTCCCCGTCAAATACAGAGACACCAAATATGCTATCTTCGATCTGCTTCAATG
TAAACACACGAATGTCAGATCTGCT
Found at i:25057778 original size:414 final size:414
Alignment explanation
Indices: 25057008--25057834 Score: 1573
Period size: 414 Copynumber: 2.0 Consensus size: 414
25056998 GCCCTGTAAA
25057008 ATGGACTGTTAAAAAAAACTTTATGTTTTCTTTTATTTGGTTTATTCTATTTTTAGACTTTTAAT
1 ATGGACTGTTAAAAAAAACTTTATGTTTTCTTTTATTTGGTTTATTCTATTTTTAGACTTTTAAT
25057073 AGCCCGGGCAAATTGGGCCTATTACAGCTACCCCTCTTTGCTTATTATTGTGTAACAAGAATAGA
66 AGCCCGGGCAAATTGGGCCTATTACAGCTACCCCTCTTTGCTTATTATTGTGTAACAAGAATAGA
25057138 GCAAAGATTATAAAATGACCAAATTTGCCCGGTCCTATCAGATCCTGACTTCATGGTCTTCAATT
131 GCAAAGATTATAAAATGACCAAATTTGCCCGGTCCTATCAGATCCTGACTTCATGGTCTTCAATT
25057203 TGCTCTCTGCAAACTCAAATATGCCATGTTAACATCTTTGAGCTGCTCCCCGTCAAATATAGAGA
196 TGCTCTCTGCAAACTCAAATATGCCATGTTAACATCTTTGAGCTGCTCCCCGTCAAATATAGAGA
*
25057268 CACCAAATCTGCTATCTTTGATCTGCTTCGATGTAAACACACGAATGTCAGATCTGCTATCTTCG
261 CACCAAATCTGCTATCTTTGATCTGCTTCGATGTAAACACACGAATGTCAAATCTGCTATCTTCG
*
25057333 ATCTGCTCCCCGTCTAATACAGAGACGCCAAATATGTCATCTTCGATCTGCTTCAATGTAAACAC
326 ATCTGCTCCCCGTCTAATACAGAGACGCCAAATATGTCATCTTCGATCTGCTTCAATATAAACAC
25057398 ACGAATGTCAGATCTGCTATCTTG
391 ACGAATGTCAGATCTGCTATCTTG
25057422 ATGGACTGTTAAAAAAAACTTTATGTTTTCTTTTATTTGGTTTATTCTATTTTTAGACTTTTAAT
1 ATGGACTGTTAAAAAAAACTTTATGTTTTCTTTTATTTGGTTTATTCTATTTTTAGACTTTTAAT
25057487 AGCCCGGGCAAATTGGGCCTATTACAGCTACCCCTCTTTGCTTATTATTGTGTAACAAGAATAGA
66 AGCCCGGGCAAATTGGGCCTATTACAGCTACCCCTCTTTGCTTATTATTGTGTAACAAGAATAGA
25057552 GCAAAGATTATAAAATGACCAAATTTGCCCGGTCCTATCAGATCCTGACTTCATGGTCTTCAATT
131 GCAAAGATTATAAAATGACCAAATTTGCCCGGTCCTATCAGATCCTGACTTCATGGTCTTCAATT
25057617 TGCTCTCTGCAAACTCAAATATGCCATGTTAACATCTTTGAGCTGCTCCCCGTCAAATATAGAGA
196 TGCTCTCTGCAAACTCAAATATGCCATGTTAACATCTTTGAGCTGCTCCCCGTCAAATATAGAGA
*
25057682 CACCAAATCTGCTATCTTTGATCTGCTTCGATGTAAACACACGAATGTCAAATCTTCTATCTTCG
261 CACCAAATCTGCTATCTTTGATCTGCTTCGATGTAAACACACGAATGTCAAATCTGCTATCTTCG
* * * * *
25057747 ATCTGGTCCCTGTCTAATATAGAGACGCCAAATCTGTCATCTTCGATCTGCTTCGATATAAACAC
326 ATCTGCTCCCCGTCTAATACAGAGACGCCAAATATGTCATCTTCGATCTGCTTCAATATAAACAC
*
25057812 ATGAATGTCAGATCTGCTATCTT
391 ACGAATGTCAGATCTGCTATCTT
25057835 CGATCTGCTC
Statistics
Matches: 404, Mismatches: 9, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
414 404 1.00
ACGTcount: A:0.28, C:0.22, G:0.15, T:0.34
Consensus pattern (414 bp):
ATGGACTGTTAAAAAAAACTTTATGTTTTCTTTTATTTGGTTTATTCTATTTTTAGACTTTTAAT
AGCCCGGGCAAATTGGGCCTATTACAGCTACCCCTCTTTGCTTATTATTGTGTAACAAGAATAGA
GCAAAGATTATAAAATGACCAAATTTGCCCGGTCCTATCAGATCCTGACTTCATGGTCTTCAATT
TGCTCTCTGCAAACTCAAATATGCCATGTTAACATCTTTGAGCTGCTCCCCGTCAAATATAGAGA
CACCAAATCTGCTATCTTTGATCTGCTTCGATGTAAACACACGAATGTCAAATCTGCTATCTTCG
ATCTGCTCCCCGTCTAATACAGAGACGCCAAATATGTCATCTTCGATCTGCTTCAATATAAACAC
ACGAATGTCAGATCTGCTATCTTG
Found at i:25058140 original size:45 final size:45
Alignment explanation
Indices: 25057650--25058191 Score: 298
Period size: 45 Copynumber: 12.1 Consensus size: 45
25057640 CCATGTTAAC
* * * * ** *
25057650 ATCTTTGAGCTGCTCCCCGTCAAATATAGAGACACCAAATCTGCT
1 ATCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCTTCT
* * * * *
25057695 ATCTTTGATCTGCT--TCGATGTAA-ACACACGAATGTCAAATCTTCT
1 ATCTTCGATCTGCTCCCCG-TCTAATACAGA-G-ATGCCAAATCTTCT
* * * *
25057740 ATCTTCGATCTGGTCCCTGTCTAATATAGAGACGCCAAATCTGTC-
1 ATCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCT-TCT
* * * * * *
25057785 ATCTTCGATCTGCT--TCGATATAA-ACACATGAATGTCAGATCTGCT
1 ATCTTCGATCTGCTCCCCG-TCTAATACAGA-G-ATGCCAAATCTTCT
*
25057830 ATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGTC-
1 ATCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCT-TCT
* * * * * *
25057875 ATCTTCGATCTGCT--TCGATATAA-ACACATGAATGTCAGATCTGCT
1 ATCTTCGATCTGCTCCCCG-TCTAATACAGA-G-ATGCCAAATCTTCT
*
25057920 ATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGTC-
1 ATCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCT-TCT
* * * * * *
25057965 ATCTTCGATCTGCT--TCGATATAA-ACACATGAATGTCAGATCTGCT
1 ATCTTCGATCTGCTCCCCG-TCTAATACAGA-G-ATGCCAAATCTTCT
* *
25058010 ATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAAACCTGTC-
1 ATCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCT-TCT
* * ** * * *
25058055 ATTTTCGAT-T-TTCTTCGATGTAA-ACACACGAATGTCAAATCTTCT
1 ATCTTCGATCTGCTCCCCG-TCTAATACAGA-G-ATGCCAAATCTTCT
* * *
25058100 ATCTTCGATCTGGTCCCTGTCTAATATAGAGATGCCAAATCTGTC-
1 ATCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCT-TCT
* * *
25058145 ATCTTCGATTTGTTCCCCGTC-AATACAGAGATGCCAAATCTGCT
1 ATCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCTTCT
25058189 ATC
1 ATC
25058192 AGTGATCTAC
Statistics
Matches: 369, Mismatches: 88, Indels: 81
0.69 0.16 0.15
Matches are distributed among these distances:
43 30 0.08
44 52 0.14
45 226 0.61
46 33 0.09
47 28 0.08
ACGTcount: A:0.27, C:0.27, G:0.15, T:0.31
Consensus pattern (45 bp):
ATCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCTTCT
Found at i:25058155 original size:90 final size:90
Alignment explanation
Indices: 25057650--25058153 Score: 767
Period size: 90 Copynumber: 5.6 Consensus size: 90
25057640 CCATGTTAAC
* * * * * *
25057650 ATCTTTGAGCTGCTCCCCGTCAAATATAGAGACACCAAATCTG-CTATCTTTGATCTGCTTCGAT
1 ATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGTC-ATCTTCGATCTGCTTCGAT
* * * *
25057714 GTAAACACACGAATGTCAAATCTTCT
65 ATAAACACATGAATGTCAGATCTGCT
* * *
25057740 ATCTTCGATCTGGTCCCTGTCTAATATAGAGACGCCAAATCTGTCATCTTCGATCTGCTTCGATA
1 ATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGTCATCTTCGATCTGCTTCGATA
25057805 TAAACACATGAATGTCAGATCTGCT
66 TAAACACATGAATGTCAGATCTGCT
25057830 ATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGTCATCTTCGATCTGCTTCGATA
1 ATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGTCATCTTCGATCTGCTTCGATA
25057895 TAAACACATGAATGTCAGATCTGCT
66 TAAACACATGAATGTCAGATCTGCT
25057920 ATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGTCATCTTCGATCTGCTTCGATA
1 ATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGTCATCTTCGATCTGCTTCGATA
25057985 TAAACACATGAATGTCAGATCTGCT
66 TAAACACATGAATGTCAGATCTGCT
* * * * *
25058010 ATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAAACCTGTCATTTTCGATTTTCTTCGATG
1 ATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGTCATCTTCGATCTGCTTCGATA
* * *
25058075 TAAACACACGAATGTCAAATCTTCT
66 TAAACACATGAATGTCAGATCTGCT
* * * *
25058100 ATCTTCGATCTGGTCCCTGTCTAATATAGAGATGCCAAATCTGTCATCTTCGAT
1 ATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGTCATCTTCGAT
25058154 TTGTTCCCCG
Statistics
Matches: 385, Mismatches: 28, Indels: 2
0.93 0.07 0.00
Matches are distributed among these distances:
90 384 1.00
91 1 0.00
ACGTcount: A:0.27, C:0.26, G:0.15, T:0.32
Consensus pattern (90 bp):
ATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGTCATCTTCGATCTGCTTCGATA
TAAACACATGAATGTCAGATCTGCT
Found at i:25063258 original size:45 final size:44
Alignment explanation
Indices: 25063203--25063293 Score: 155
Period size: 45 Copynumber: 2.0 Consensus size: 44
25063193 TTCCCAATCC
* *
25063203 TTTTCTTGGCAAGGCTCCTTTCCCTGCTGTCATCTGCAAGCCCA
1 TTTTCCTGGCAAGGCTCCTTTCCCTACTGTCATCTGCAAGCCCA
25063247 NTTTTCCTGGCAAGGCTCCTTTCCCTACTGTCATCTGCAAGCCCA
1 -TTTTCCTGGCAAGGCTCCTTTCCCTACTGTCATCTGCAAGCCCA
25063292 TT
1 TT
25063294 CTTGTGGTTT
Statistics
Matches: 44, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
44 2 0.05
45 42 0.95
ACGTcount: A:0.14, C:0.34, G:0.16, T:0.34
Consensus pattern (44 bp):
TTTTCCTGGCAAGGCTCCTTTCCCTACTGTCATCTGCAAGCCCA
Found at i:25070193 original size:20 final size:20
Alignment explanation
Indices: 25070168--25070206 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
25070158 ATTATATATA
*
25070168 ATAATAAATAATAAGATAAC
1 ATAATAAATAATAAAATAAC
*
25070188 ATAATATATAATAAAATAA
1 ATAATAAATAATAAAATAA
25070207 GAAATGATTA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.67, C:0.03, G:0.03, T:0.28
Consensus pattern (20 bp):
ATAATAAATAATAAAATAAC
Found at i:25070204 original size:28 final size:28
Alignment explanation
Indices: 25070160--25070232 Score: 78
Period size: 28 Copynumber: 2.5 Consensus size: 28
25070150 ATTTTAAAAT
*
25070160 TATATATAATAATAAATAA-TAA-GATAACA
1 TATATATAAT-A-AAATAAGAAATGATAA-A
*
25070189 TAATATATAATAAAATAAGAAATGATTAA
1 T-ATATATAATAAAATAAGAAATGATAAA
25070218 TATATATAATAAAAT
1 TATATATAATAAAAT
25070233 GATTTAATAT
Statistics
Matches: 39, Mismatches: 2, Indels: 7
0.81 0.04 0.15
Matches are distributed among these distances:
28 20 0.51
29 6 0.15
30 13 0.33
ACGTcount: A:0.62, C:0.01, G:0.04, T:0.33
Consensus pattern (28 bp):
TATATATAATAAAATAAGAAATGATAAA
Found at i:25070242 original size:20 final size:21
Alignment explanation
Indices: 25070208--25070294 Score: 65
Period size: 20 Copynumber: 4.1 Consensus size: 21
25070198 ATAAAATAAG
*
25070208 AAATGATTAATATATATAATA
1 AAATGATTAATATATATAACA
*
25070229 AAATGATTTA-ATATATAACA
1 AAATGATTAATATATATAACA
*
25070249 AAAT-ATATAAATAAAATATATAATA
1 AAATGAT-T-AAT---ATATATAACA
*
25070274 AAATG-TAAATA-ATATAACA
1 AAATGATTAATATATATAACA
25070293 AA
1 AA
25070295 TAATACATAA
Statistics
Matches: 53, Mismatches: 6, Indels: 16
0.71 0.08 0.21
Matches are distributed among these distances:
19 11 0.21
20 15 0.28
21 10 0.19
23 3 0.06
25 14 0.26
ACGTcount: A:0.62, C:0.02, G:0.03, T:0.32
Consensus pattern (21 bp):
AAATGATTAATATATATAACA
Found at i:25070255 original size:12 final size:12
Alignment explanation
Indices: 25070238--25070277 Score: 62
Period size: 12 Copynumber: 3.2 Consensus size: 12
25070228 AAAATGATTT
*
25070238 AATATATAACAA
1 AATATATAATAA
25070250 AATATATAAATAA
1 AATATAT-AATAA
25070263 AATATATAATAA
1 AATATATAATAA
25070275 AAT
1 AAT
25070278 GTAAATAATA
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
12 15 0.58
13 11 0.42
ACGTcount: A:0.68, C:0.03, G:0.00, T:0.30
Consensus pattern (12 bp):
AATATATAATAA
Found at i:25070341 original size:19 final size:20
Alignment explanation
Indices: 25070309--25070353 Score: 56
Period size: 20 Copynumber: 2.2 Consensus size: 20
25070299 ACATAAATAA
*
25070309 AAATATATATAATAATTTTT
1 AAATATATATAATAATGTTT
*
25070329 AAATGTATA-AATAATGTTT
1 AAATATATATAATAATGTTT
25070348 ATAATA
1 A-AATA
25070354 AAAATAAATG
Statistics
Matches: 21, Mismatches: 3, Indels: 2
0.81 0.12 0.08
Matches are distributed among these distances:
19 10 0.48
20 11 0.52
ACGTcount: A:0.51, C:0.00, G:0.04, T:0.44
Consensus pattern (20 bp):
AAATATATATAATAATGTTT
Found at i:25070387 original size:29 final size:29
Alignment explanation
Indices: 25070355--25070411 Score: 87
Period size: 29 Copynumber: 2.0 Consensus size: 29
25070345 TTTATAATAA
*
25070355 AAATAAATGATATATAAAACATTTTAAAT
1 AAATAAATGATATATAAAACAATTTAAAT
* *
25070384 AAATAAATTATATATAAAAGAATTTAAA
1 AAATAAATGATATATAAAACAATTTAAA
25070412 AAGGATTAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
29 25 1.00
ACGTcount: A:0.61, C:0.02, G:0.04, T:0.33
Consensus pattern (29 bp):
AAATAAATGATATATAAAACAATTTAAAT
Found at i:25070606 original size:30 final size:30
Alignment explanation
Indices: 25070572--25070629 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
25070562 ATAATAGCCA
* *
25070572 TTAGGACTAAATTGAAACAAAAATAAAAGG
1 TTAGGACCAAATTAAAACAAAAATAAAAGG
*
25070602 TTAGGACCAAATTAAAATAAAAATAAAA
1 TTAGGACCAAATTAAAACAAAAATAAAA
25070630 TGAAATTATA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.60, C:0.07, G:0.12, T:0.21
Consensus pattern (30 bp):
TTAGGACCAAATTAAAACAAAAATAAAAGG
Found at i:25079078 original size:9 final size:9
Alignment explanation
Indices: 25079058--25079091 Score: 61
Period size: 9 Copynumber: 3.9 Consensus size: 9
25079048 CGGGCCCATG
25079058 GGCCCA-TC
1 GGCCCATTC
25079066 GGCCCATTC
1 GGCCCATTC
25079075 GGCCCATTC
1 GGCCCATTC
25079084 GGCCCATT
1 GGCCCATT
25079092 ATGGCCTAAG
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
8 6 0.24
9 19 0.76
ACGTcount: A:0.12, C:0.44, G:0.24, T:0.21
Consensus pattern (9 bp):
GGCCCATTC
Found at i:25080605 original size:66 final size:65
Alignment explanation
Indices: 25080477--25080620 Score: 155
Period size: 66 Copynumber: 2.2 Consensus size: 65
25080467 CACAGTCTCA
* * *
25080477 CACACGGACGTGTGATTGGTCGTGTGCTACAAGTCAGTATACCCCCTAATTGGCACATGGCCTAG
1 CACACGGACGTGTGATTGGCCGTGTGCCACAAGTCAGTATACCCCCTAATTGGCACACGGCCTAG
* * * * * **
25080542 CACACGGACGTGTGACTTGGCCGTGTTCCATAAGTTAGTATACCTTCC-AGTTTTCACACGGCCT
1 CACACGGACGTGTGA-TTGGCCGTGTGCCACAAGTCAGTATACC-CCCTAATTGGCACACGGCCT
*
25080606 GG
64 AG
*
25080608 CACACGGGCGTGT
1 CACACGGACGTGT
25080621 CCTCAGTCCT
Statistics
Matches: 65, Mismatches: 12, Indels: 3
0.81 0.15 0.04
Matches are distributed among these distances:
65 15 0.23
66 48 0.74
67 2 0.03
ACGTcount: A:0.21, C:0.27, G:0.26, T:0.26
Consensus pattern (65 bp):
CACACGGACGTGTGATTGGCCGTGTGCCACAAGTCAGTATACCCCCTAATTGGCACACGGCCTAG
Found at i:25083001 original size:15 final size:13
Alignment explanation
Indices: 25082970--25082995 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
25082960 CTACAGGGGA
25082970 CACATGGCCGTGT
1 CACATGGCCGTGT
25082983 CACATGGCCGTGT
1 CACATGGCCGTGT
25082996 GTCACACATG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.15, C:0.31, G:0.31, T:0.23
Consensus pattern (13 bp):
CACATGGCCGTGT
Found at i:25083942 original size:80 final size:80
Alignment explanation
Indices: 25083804--25083951 Score: 210
Period size: 80 Copynumber: 1.9 Consensus size: 80
25083794 CATAAGTGCT
* * * *
25083804 ATTCATGGGTACTAAAGTACAAATAGGGGCACGTATGTACAATTCAGGGGTACCGAAGTACAACG
1 ATTCAAGGGTACCAAAGTACAAACAGGGGCACATATGTACAATTCAGGGGTACCGAAGTACAAC-
25083869 AGGGTAGGTATGGGCA
65 AGGGTAGGTATGGGCA
* *
25083885 ATTCAAGGGTACCAAAGTAC-AACAGTGGCACATATG-AGCAATTCAGGGGTACTGAAGTACAAC
1 ATTCAAGGGTACCAAAGTACAAACAGGGGCACATATGTA-CAATTCAGGGGTACCGAAGTACAAC
25083948 AGGG
65 AGGG
25083952 CCACGTATGT
Statistics
Matches: 60, Mismatches: 6, Indels: 4
0.86 0.09 0.06
Matches are distributed among these distances:
79 5 0.08
80 37 0.62
81 18 0.30
ACGTcount: A:0.35, C:0.16, G:0.29, T:0.20
Consensus pattern (80 bp):
ATTCAAGGGTACCAAAGTACAAACAGGGGCACATATGTACAATTCAGGGGTACCGAAGTACAACA
GGGTAGGTATGGGCA
Found at i:25083960 original size:80 final size:81
Alignment explanation
Indices: 25083804--25083976 Score: 208
Period size: 80 Copynumber: 2.1 Consensus size: 81
25083794 CATAAGTGCT
* * * *
25083804 ATTCATGGGTACTAAAGTACAAATAGGGGCACGTATGTACAATTCAGGGGTACCGAAGTACAACG
1 ATTCAAGGGTACCAAAGTACAAACAGGGGCACATATGTACAATTCAGGGGTACCGAAGTACAACG
* *
25083869 AGGGTAGGTATGGGCA
66 AGGGCACGTATGGGCA
* *
25083885 ATTCAAGGGTACCAAAGTAC-AACAGTGGCACATATG-AGCAATTCAGGGGTACTGAAGTACAAC
1 ATTCAAGGGTACCAAAGTACAAACAGGGGCACATATGTA-CAATTCAGGGGTACCGAAGTACAAC
*
25083948 -AGGGCCACGTATGTGCA
65 GAGGG-CACGTATGGGCA
* *
25083965 ATTTAGGGGTAC
1 ATTCAAGGGTAC
25083977 TGAGTACAAT
Statistics
Matches: 79, Mismatches: 11, Indels: 5
0.83 0.12 0.05
Matches are distributed among these distances:
79 5 0.06
80 56 0.71
81 18 0.23
ACGTcount: A:0.34, C:0.17, G:0.29, T:0.21
Consensus pattern (81 bp):
ATTCAAGGGTACCAAAGTACAAACAGGGGCACATATGTACAATTCAGGGGTACCGAAGTACAACG
AGGGCACGTATGGGCA
Found at i:25084010 original size:39 final size:38
Alignment explanation
Indices: 25083784--25084006 Score: 167
Period size: 40 Copynumber: 5.6 Consensus size: 38
25083774 TCGGAGTGTG
* * * * *
25083784 AAAAGGGCTACATAAGTGCTATTCATGGGTACTAAAGTAC
1 AAAAGGGC-ACGTATGTGCAATTCAGGGGTACT-GAGTAC
* *
25083824 AAATAGGGGCACGTATGTACAATTCAGGGGTACCGAAGTAC
1 AAA-A-GGGCACGTATGTGCAATTCAGGGGTACTG-AGTAC
* * * * * **
25083865 AACGAGGGTAGGTATGGGCAATTCAAGGGTACCAAAGTAC
1 AA-AAGGGCACGTATGTGCAATTCAGGGGTA-CTGAGTAC
* * *
25083905 AACAGTGGCACATATGAGCAATTCAGGGGTACTGAAGTAC
1 AAAAG-GGCACGTATGTGCAATTCAGGGGTACTG-AGTAC
* *
25083945 AACAGGGCCACGTATGTGCAATTTAGGGGTACTGAGTAC
1 AAAAGGG-CACGTATGTGCAATTCAGGGGTACTGAGTAC
*
25083984 AATAAGGGAACGTATGTGCAATT
1 AA-AAGGGCACGTATGTGCAATT
25084007 TAGGAATAAT
Statistics
Matches: 146, Mismatches: 28, Indels: 19
0.76 0.15 0.10
Matches are distributed among these distances:
39 26 0.18
40 88 0.60
41 28 0.19
42 4 0.03
ACGTcount: A:0.35, C:0.16, G:0.28, T:0.22
Consensus pattern (38 bp):
AAAAGGGCACGTATGTGCAATTCAGGGGTACTGAGTAC
Found at i:25088772 original size:29 final size:29
Alignment explanation
Indices: 25088739--25088800 Score: 115
Period size: 29 Copynumber: 2.1 Consensus size: 29
25088729 CATTCATCAC
*
25088739 ACACCAGAACGGTTATCTCTACATTTGTT
1 ACACCAGAACGGTTATCTCTACATTTCTT
25088768 ACACCAGAACGGTTATCTCTACATTTCTT
1 ACACCAGAACGGTTATCTCTACATTTCTT
25088797 ACAC
1 ACAC
25088801 TTCCATTCTC
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 32 1.00
ACGTcount: A:0.29, C:0.27, G:0.11, T:0.32
Consensus pattern (29 bp):
ACACCAGAACGGTTATCTCTACATTTCTT
Found at i:25094577 original size:27 final size:27
Alignment explanation
Indices: 25094547--25094664 Score: 134
Period size: 27 Copynumber: 4.4 Consensus size: 27
25094537 GGACATAATC
** *
25094547 GTCATTTTACAATACAGGGGTATTACA
1 GTCATTTTACCCTACAGGGGCATTACA
*
25094574 GTCATTTTACCCTATAGGGGCATTACCA
1 GTCATTTTACCCTACAGGGGCATTA-CA
*
25094602 -TCATTTTACCCTATA-GGGCATTAC-
1 GTCATTTTACCCTACAGGGGCATTACA
*
25094626 GATCATTTTACCCTACAGGGGCATTACT
1 G-TCATTTTACCCTACAGGGGCATTACA
*
25094654 GTTATTTTACC
1 GTCATTTTACC
25094665 TATTTTATGG
Statistics
Matches: 80, Mismatches: 6, Indels: 10
0.83 0.06 0.10
Matches are distributed among these distances:
25 1 0.01
26 22 0.28
27 54 0.68
28 3 0.04
ACGTcount: A:0.26, C:0.22, G:0.16, T:0.36
Consensus pattern (27 bp):
GTCATTTTACCCTACAGGGGCATTACA
Found at i:25102988 original size:41 final size:39
Alignment explanation
Indices: 25102923--25103110 Score: 191
Period size: 40 Copynumber: 4.7 Consensus size: 39
25102913 CCGGAGTGTG
* * *
25102923 AACAGGGGCACGTAAGTGCTATTCAGGGCTACTGAAGTAC
1 AACAGGGGCACGTATGTGCAATTCAGGG-TACTAAAGTAC
* *
25102963 AAACAGAGACACGTATGTGCAATTCAAGGGTA-TCAAAGTAC
1 -AACAGGGGCACGTATGTGCAATTC-AGGGTACT-AAAGTAC
* * *
25103004 AATAGGGGCATGTATATGCAATTCAGGGATAAC-AAAGTAC
1 AACAGGGGCACGTATGTGCAATTCAGGG-T-ACTAAAGTAC
* * *
25103044 AATAGGGGCACGTATGTGCAATTTACGGGTACTGAAGTAC
1 AACAGGGGCACGTATGTGCAATTCA-GGGTACTAAAGTAC
*
25103084 AACAGGGGCATGTATGTGCAATTCAGG
1 AACAGGGGCACGTATGTGCAATTCAGG
25103111 TATAATTATC
Statistics
Matches: 123, Mismatches: 17, Indels: 16
0.79 0.11 0.10
Matches are distributed among these distances:
39 8 0.07
40 79 0.64
41 32 0.26
42 4 0.03
ACGTcount: A:0.35, C:0.16, G:0.28, T:0.22
Consensus pattern (39 bp):
AACAGGGGCACGTATGTGCAATTCAGGGTACTAAAGTAC
Found at i:25104109 original size:13 final size:13
Alignment explanation
Indices: 25104091--25104115 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
25104081 AAGCATGCAA
25104091 TTAACAAAATTTC
1 TTAACAAAATTTC
25104104 TTAACAAAATTT
1 TTAACAAAATTT
25104116 TTATATGACC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.12, G:0.00, T:0.40
Consensus pattern (13 bp):
TTAACAAAATTTC
Found at i:25107722 original size:25 final size:26
Alignment explanation
Indices: 25107686--25107746 Score: 74
Period size: 25 Copynumber: 2.5 Consensus size: 26
25107676 CATAAGTGCC
* *
25107686 TTTCA-TTCGAACAGTTAATCAAACA
1 TTTCAGTTCGAACAATCAATCAAACA
*
25107711 TTTCAGTT-GAACAATCAATCAGACA
1 TTTCAGTTCGAACAATCAATCAAACA
25107736 TTTCAG-TCGAA
1 TTTCAGTTCGAA
25107747 TATCCATATG
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
24 1 0.03
25 28 0.90
26 2 0.06
ACGTcount: A:0.38, C:0.20, G:0.11, T:0.31
Consensus pattern (26 bp):
TTTCAGTTCGAACAATCAATCAAACA
Found at i:25112127 original size:21 final size:21
Alignment explanation
Indices: 25112098--25112138 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
25112088 CAATAGTAGT
*
25112098 AATGTATGCAAACCCATCTGA
1 AATGCATGCAAACCCATCTGA
25112119 AATGCATGCAAACCCATCTG
1 AATGCATGCAAACCCATCTG
25112139 GGGAGACTAC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.37, C:0.27, G:0.15, T:0.22
Consensus pattern (21 bp):
AATGCATGCAAACCCATCTGA
Found at i:25125889 original size:14 final size:15
Alignment explanation
Indices: 25125862--25125903 Score: 61
Period size: 15 Copynumber: 2.9 Consensus size: 15
25125852 AATGATAAGA
25125862 AAATAATAAGAAAAT
1 AAATAATAAGAAAAT
25125877 AAATAAT-AGAAAAT
1 AAATAATAAGAAAAT
25125891 AAATGAA-AAGAAA
1 AAAT-AATAAGAAA
25125904 CAAATCAAAT
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
14 11 0.44
15 14 0.56
ACGTcount: A:0.74, C:0.00, G:0.10, T:0.17
Consensus pattern (15 bp):
AAATAATAAGAAAAT
Found at i:25127460 original size:48 final size:48
Alignment explanation
Indices: 25127387--25127491 Score: 174
Period size: 48 Copynumber: 2.2 Consensus size: 48
25127377 GGAGACAATC
* *
25127387 AAACCTTATGGATTCACGATTAATCTTAATACAATTAGTCTCTTTTGT
1 AAACCTTATGGATTCACGATCAATCTTAATACAATCAGTCTCTTTTGT
*
25127435 AAACCTTATGGATTCACGATCAATCTTAATATAATCAGTCTCTTTTGT
1 AAACCTTATGGATTCACGATCAATCTTAATACAATCAGTCTCTTTTGT
*
25127483 AAACTTTAT
1 AAACCTTAT
25127492 ATTGTCGATT
Statistics
Matches: 53, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
48 53 1.00
ACGTcount: A:0.32, C:0.17, G:0.10, T:0.41
Consensus pattern (48 bp):
AAACCTTATGGATTCACGATCAATCTTAATACAATCAGTCTCTTTTGT
Found at i:25131406 original size:40 final size:40
Alignment explanation
Indices: 25131351--25131574 Score: 315
Period size: 40 Copynumber: 5.5 Consensus size: 40
25131341 TATTCGGATG
25131351 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
25131391 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTAGTTACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGC-A--AGTTACT
* * *
25131434 ATACCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
* * * *
25131474 ATATTCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
* * *
25131514 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
*
25131554 ATATCC-GGCTAAATCCCGAAG
1 ATATCCGGGCTAAGTCCCGAAG
25131575 ATACTTGGGT
Statistics
Matches: 167, Mismatches: 14, Indels: 7
0.89 0.07 0.04
Matches are distributed among these distances:
39 13 0.08
40 115 0.69
41 1 0.01
43 38 0.23
ACGTcount: A:0.25, C:0.23, G:0.26, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
Found at i:25131494 original size:83 final size:80
Alignment explanation
Indices: 25131355--25131574 Score: 300
Period size: 83 Copynumber: 2.7 Consensus size: 80
25131345 CGGATGATAT
* * *
25131355 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTGACTATATTCGGGCTAAGTCCCGAAGGCATTTA
*
25131420 TGCGAGTAGTTACTATAC
66 TGC---TAGTGACTATAC
*
25131438 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATTCGGGCTAAGTCCCGAAGGCATTTA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTGACTATATTCGGGCTAAGTCCCGAAGGCATTTA
*
25131503 TGCTAGTGACTATAT
66 TGCTAGTGACTATAC
* * * *
25131518 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CTATA-TCCGGCTAAATCCCGAAG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAG-TGACTATATTCGGGCTAAGTCCCGAAG
25131575 ATACTTGGGT
Statistics
Matches: 126, Mismatches: 10, Indels: 6
0.89 0.07 0.04
Matches are distributed among these distances:
79 16 0.13
80 44 0.35
81 2 0.02
83 64 0.51
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.26
Consensus pattern (80 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTGACTATATTCGGGCTAAGTCCCGAAGGCATTTA
TGCTAGTGACTATAC
Found at i:25134808 original size:23 final size:23
Alignment explanation
Indices: 25134782--25134829 Score: 62
Period size: 23 Copynumber: 2.1 Consensus size: 23
25134772 AAATATAAGC
*
25134782 TTTTAAAATTAT-AAAATTACAA
1 TTTTTAAATTATAAAAATTACAA
**
25134804 TTTTTCTATTATAAAAATTACAA
1 TTTTTAAATTATAAAAATTACAA
25134827 TTT
1 TTT
25134830 AATTTTTCCT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
22 9 0.41
23 13 0.59
ACGTcount: A:0.46, C:0.06, G:0.00, T:0.48
Consensus pattern (23 bp):
TTTTTAAATTATAAAAATTACAA
Found at i:25137572 original size:14 final size:14
Alignment explanation
Indices: 25137553--25137599 Score: 60
Period size: 14 Copynumber: 3.4 Consensus size: 14
25137543 AAGTAAACTT
25137553 ATATAACAAAAGTA
1 ATATAACAAAAGTA
* * *
25137567 ATATAA-TAAACTT
1 ATATAACAAAAGTA
25137580 ATATAACAAAAGTA
1 ATATAACAAAAGTA
25137594 ATATAA
1 ATATAA
25137600 TAATAAAGTT
Statistics
Matches: 26, Mismatches: 6, Indels: 2
0.76 0.18 0.06
Matches are distributed among these distances:
13 10 0.38
14 16 0.62
ACGTcount: A:0.62, C:0.06, G:0.04, T:0.28
Consensus pattern (14 bp):
ATATAACAAAAGTA
Found at i:25137612 original size:30 final size:27
Alignment explanation
Indices: 25137546--25137602 Score: 114
Period size: 27 Copynumber: 2.1 Consensus size: 27
25137536 ACAAATAAAG
25137546 TAAACTTATATAACAAAAGTAATATAA
1 TAAACTTATATAACAAAAGTAATATAA
25137573 TAAACTTATATAACAAAAGTAATATAA
1 TAAACTTATATAACAAAAGTAATATAA
25137600 TAA
1 TAA
25137603 TAAAGTTATA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 30 1.00
ACGTcount: A:0.60, C:0.07, G:0.04, T:0.30
Consensus pattern (27 bp):
TAAACTTATATAACAAAAGTAATATAA
Found at i:25139552 original size:25 final size:25
Alignment explanation
Indices: 25139515--25139567 Score: 97
Period size: 25 Copynumber: 2.1 Consensus size: 25
25139505 AGGTTGAGCC
*
25139515 ATTCAAAGTTTTCATCTAGTTTTGG
1 ATTCAAAGATTTCATCTAGTTTTGG
25139540 ATTCAAAGATTTCATCTAGTTTTGG
1 ATTCAAAGATTTCATCTAGTTTTGG
25139565 ATT
1 ATT
25139568 TAGTTCCATA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 27 1.00
ACGTcount: A:0.26, C:0.11, G:0.15, T:0.47
Consensus pattern (25 bp):
ATTCAAAGATTTCATCTAGTTTTGG
Found at i:25144787 original size:20 final size:20
Alignment explanation
Indices: 25144762--25144799 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
25144752 ACCGATAACT
25144762 TTGAAAACTTTCACAAAACC
1 TTGAAAACTTTCACAAAACC
* *
25144782 TTGAAAATTTTCTCAAAA
1 TTGAAAACTTTCACAAAA
25144800 TAGGGGACAC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.45, C:0.18, G:0.05, T:0.32
Consensus pattern (20 bp):
TTGAAAACTTTCACAAAACC
Found at i:25147159 original size:31 final size:30
Alignment explanation
Indices: 25147103--25147161 Score: 75
Period size: 31 Copynumber: 1.9 Consensus size: 30
25147093 GTAAATACTT
25147103 AAAACTTGAGGGACTAAAGTCTAAATATGA
1 AAAACTTGAGGGACTAAAGTCTAAATATGA
* *
25147133 AAAAGTTGAAGGG-CTAATAGTGTAAATAT
1 AAAACTTG-AGGGACTAA-AGTCTAAATAT
25147162 TGTAAGGGTG
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
30 11 0.44
31 14 0.56
ACGTcount: A:0.46, C:0.07, G:0.22, T:0.25
Consensus pattern (30 bp):
AAAACTTGAGGGACTAAAGTCTAAATATGA
Found at i:25147448 original size:11 final size:11
Alignment explanation
Indices: 25147432--25147456 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
25147422 ATATGATATT
25147432 TTATTATTTTA
1 TTATTATTTTA
25147443 TTATTATTTTA
1 TTATTATTTTA
25147454 TTA
1 TTA
25147457 GTATATAAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (11 bp):
TTATTATTTTA
Found at i:25153465 original size:33 final size:33
Alignment explanation
Indices: 25153428--25153500 Score: 110
Period size: 33 Copynumber: 2.2 Consensus size: 33
25153418 TGCATGTTGA
* *
25153428 GCATGTTGATTGTGTTGACTATAAATTTGATTC
1 GCATGTTGACTGTGTTGACTATAAATCTGATTC
*
25153461 GCATGTTGGCTGTGTTGACTATAAATCTGATTC
1 GCATGTTGACTGTGTTGACTATAAATCTGATTC
*
25153494 ACATGTT
1 GCATGTT
25153501 AAGCATGTCC
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
33 36 1.00
ACGTcount: A:0.23, C:0.12, G:0.22, T:0.42
Consensus pattern (33 bp):
GCATGTTGACTGTGTTGACTATAAATCTGATTC
Found at i:25154349 original size:25 final size:24
Alignment explanation
Indices: 25154314--25154389 Score: 75
Period size: 26 Copynumber: 3.0 Consensus size: 24
25154304 TTTAATCACT
25154314 TTAATATTAAATTAATATAATATTTA
1 TTAATA-TAAATTAATATAA-ATTTA
25154340 TTAATATAAATATTAGAT-TAAATTTA
1 TTAATAT-AA-ATTA-ATATAAATTTA
*
25154366 TT-ATATAAATATTATATAAATTTA
1 TTAATATAAAT-TAATATAAATTTA
25154390 ATATTATATT
Statistics
Matches: 44, Mismatches: 1, Indels: 12
0.77 0.02 0.21
Matches are distributed among these distances:
23 4 0.09
24 11 0.25
25 5 0.11
26 15 0.34
27 7 0.16
28 2 0.05
ACGTcount: A:0.50, C:0.00, G:0.01, T:0.49
Consensus pattern (24 bp):
TTAATATAAATTAATATAAATTTA
Found at i:25154380 original size:11 final size:11
Alignment explanation
Indices: 25154338--25154386 Score: 53
Period size: 11 Copynumber: 4.1 Consensus size: 11
25154328 ATATAATATT
25154338 TATTAATATAAA
1 TATT-ATATAAA
*
25154350 TATTAGATTAAA
1 TATTATA-TAAA
25154362 TTTATTATATAAA
1 --TATTATATAAA
25154375 TATTATATAAA
1 TATTATATAAA
25154386 T
1 T
25154387 TTAATATTAT
Statistics
Matches: 32, Mismatches: 2, Indels: 7
0.78 0.05 0.17
Matches are distributed among these distances:
11 14 0.44
12 8 0.25
13 4 0.12
14 6 0.19
ACGTcount: A:0.51, C:0.00, G:0.02, T:0.47
Consensus pattern (11 bp):
TATTATATAAA
Found at i:25154393 original size:11 final size:11
Alignment explanation
Indices: 25154313--25154393 Score: 51
Period size: 11 Copynumber: 6.7 Consensus size: 11
25154303 ATTTAATCAC
25154313 TTTAATATTAAA
1 TTTAATA-TAAA
25154325 -TTAATATAATA
1 TTTAATATAA-A
25154336 TTTATTAATATAAA
1 --T-TTAATATAAA
25154350 TATTAGAT-TAAA
1 T-TTA-ATATAAA
25154362 TTTATTATATAAA
1 TTTA--ATATAAA
25154375 TATT-ATATAAA
1 T-TTAATATAAA
25154386 TTTAATAT
1 TTTAATAT
25154394 TATATTATTA
Statistics
Matches: 58, Mismatches: 1, Indels: 21
0.73 0.01 0.26
Matches are distributed among these distances:
10 5 0.09
11 22 0.38
12 12 0.21
13 7 0.12
14 3 0.05
15 9 0.16
ACGTcount: A:0.49, C:0.00, G:0.01, T:0.49
Consensus pattern (11 bp):
TTTAATATAAA
Found at i:25154397 original size:25 final size:24
Alignment explanation
Indices: 25154313--25154393 Score: 85
Period size: 25 Copynumber: 3.3 Consensus size: 24
25154303 ATTTAATCAC
*
25154313 TTTAATAT-TAAAT-TAATATAATA
1 TTTAATATATAAATATTATATAA-A
* *
25154336 TTTATTAATATAAATATTAGATTAAA
1 TTTAAT-ATATAAATATTATA-TAAA
*
25154362 TTTATTATATAAATATTATATAAA
1 TTTAATATATAAATATTATATAAA
25154386 TTTAATAT
1 TTTAATAT
25154394 TATATTATTA
Statistics
Matches: 49, Mismatches: 5, Indels: 7
0.80 0.08 0.11
Matches are distributed among these distances:
23 5 0.10
24 13 0.27
25 18 0.37
26 10 0.20
27 3 0.06
ACGTcount: A:0.49, C:0.00, G:0.01, T:0.49
Consensus pattern (24 bp):
TTTAATATATAAATATTATATAAA
Found at i:25154478 original size:25 final size:25
Alignment explanation
Indices: 25154439--25154507 Score: 68
Period size: 25 Copynumber: 2.7 Consensus size: 25
25154429 ATAAACATTA
* *
25154439 TATTAAATTTAATATTAAGATAATCAC
1 TATT-AATATAATATTAAGAAAAT-AC
* *
25154466 T-TTAATATTATATTAATAAAATAC
1 TATTAATATAATATTAAGAAAATAC
25154490 TATTAATATAAGTATTAA
1 TATTAATATAA-TATTAA
25154508 ATTAAATTAA
Statistics
Matches: 35, Mismatches: 5, Indels: 5
0.78 0.11 0.11
Matches are distributed among these distances:
24 3 0.09
25 23 0.66
26 8 0.23
27 1 0.03
ACGTcount: A:0.49, C:0.04, G:0.03, T:0.43
Consensus pattern (25 bp):
TATTAATATAATATTAAGAAAATAC
Found at i:25160954 original size:29 final size:28
Alignment explanation
Indices: 25160919--25160993 Score: 98
Period size: 29 Copynumber: 2.6 Consensus size: 28
25160909 TGAGATTGGG
25160919 ACTAAGTGTGCGGGTTTAAATTGTACA-GC
1 ACTAAGTGTGCGGGTTTAAA--GTACAGGC
*
25160948 ACTAAGTGTGCGAGTTTAAAGTACATGGC
1 ACTAAGTGTGCGGGTTTAAAGTACA-GGC
25160977 ACTAAGTGTGCGTGGTT
1 ACTAAGTGTGCG-GGTT
25160994 GATTATTAAG
Statistics
Matches: 41, Mismatches: 2, Indels: 5
0.85 0.04 0.10
Matches are distributed among these distances:
27 5 0.12
29 33 0.80
30 3 0.07
ACGTcount: A:0.27, C:0.13, G:0.29, T:0.31
Consensus pattern (28 bp):
ACTAAGTGTGCGGGTTTAAAGTACAGGC
Found at i:25161211 original size:174 final size:174
Alignment explanation
Indices: 25160946--25161868 Score: 1740
Period size: 174 Copynumber: 5.3 Consensus size: 174
25160936 AAATTGTACA
* *
25160946 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGTGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
25161011 TGTGCGAACTCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
66 TGTGCGAACTCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
25161076 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
131 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
*
25161120 GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGTGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
25161185 TGTGCGAACTCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
66 TGTGCGAACTCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
*
25161250 TTTTGGACAGTGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
131 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
*
25161294 GCACTAAGTGTGTGAGTTTAAAGTGCATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
25161359 TGTGCGAACTCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
66 TGTGCGAACTCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
*
25161424 TTTTGGTCAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
131 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
*
25161468 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
*
25161533 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
66 TGTGCGAACTCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
25161598 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
131 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
25161642 GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
* *
25161707 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACTGAGTCGA
66 TGTGCGAACTCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
25161772 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
131 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
*
25161816 GCACTAAGTGTGTGAGTTTAAAGTGCATGGCACTAAGTGTGCGCGGTTG-TTAT
1 GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTAT
25161869 GTTTATATTT
Statistics
Matches: 736, Mismatches: 13, Indels: 1
0.98 0.02 0.00
Matches are distributed among these distances:
173 4 0.01
174 732 0.99
ACGTcount: A:0.29, C:0.14, G:0.25, T:0.32
Consensus pattern (174 bp):
GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
TGTGCGAACTCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
Found at i:25164176 original size:57 final size:58
Alignment explanation
Indices: 25164102--25164269 Score: 268
Period size: 57 Copynumber: 2.9 Consensus size: 58
25164092 GTGCCCACTG
* * * *
25164102 ACCGATCTCGCATACATAGTGCTCGGTTGAA-GAACTCGCACACACAGTGCCTCAATT
1 ACCGATCTCGCACACATAGTGCTCGGTTAAAGGAATTTGCACACACAGTGCCTCAATT
*
25164159 ACCGATCTCGTACACATAGTGCTCGGTTAAAGGAATTTGCACACACAGT-CCTCAATT
1 ACCGATCTCGCACACATAGTGCTCGGTTAAAGGAATTTGCACACACAGTGCCTCAATT
*
25164216 ACCGATCTTGCACACATAGTGCTCGGTTAAAGGAATTTGCACACACAGTGCCTC
1 ACCGATCTCGCACACATAGTGCTCGGTTAAAGGAATTTGCACACACAGTGCCTC
25164270 TAATCATTCG
Statistics
Matches: 102, Mismatches: 7, Indels: 3
0.91 0.06 0.03
Matches are distributed among these distances:
57 83 0.81
58 19 0.19
ACGTcount: A:0.29, C:0.28, G:0.19, T:0.24
Consensus pattern (58 bp):
ACCGATCTCGCACACATAGTGCTCGGTTAAAGGAATTTGCACACACAGTGCCTCAATT
Found at i:25164202 original size:29 final size:29
Alignment explanation
Indices: 25164170--25164266 Score: 108
Period size: 29 Copynumber: 3.4 Consensus size: 29
25164160 CCGATCTCGT
*
25164170 ACACATAGTGCTCGGTTAAAGGAATTTGC
1 ACACACAGTGCTCGGTTAAAGGAATTTGC
* ** **
25164199 ACACACAGTCCTCAATT-ACCG-ATCTTGC
1 ACACACAGTGCTCGGTTAAAGGAAT-TTGC
*
25164227 ACACATAGTGCTCGGTTAAAGGAATTTGC
1 ACACACAGTGCTCGGTTAAAGGAATTTGC
25164256 ACACACAGTGC
1 ACACACAGTGC
25164267 CTCTAATCAT
Statistics
Matches: 52, Mismatches: 13, Indels: 6
0.73 0.18 0.08
Matches are distributed among these distances:
27 2 0.04
28 19 0.37
29 29 0.56
30 2 0.04
ACGTcount: A:0.31, C:0.25, G:0.20, T:0.25
Consensus pattern (29 bp):
ACACACAGTGCTCGGTTAAAGGAATTTGC
Found at i:25164489 original size:43 final size:43
Alignment explanation
Indices: 25164435--25164523 Score: 151
Period size: 43 Copynumber: 2.1 Consensus size: 43
25164425 CACCGGCATT
* *
25164435 AAGCCTGCTAGGCACGAAGACCCGAATACACATCATCGGCACG
1 AAGCCTGCTAGGCACGAAGACCCGAATACACATCACCAGCACG
*
25164478 AAGCCTGCTAGGCACGAAGGCCCGAATACACATCACCAGCACG
1 AAGCCTGCTAGGCACGAAGACCCGAATACACATCACCAGCACG
25164521 AAG
1 AAG
25164524 GCCCAAATAC
Statistics
Matches: 43, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
43 43 1.00
ACGTcount: A:0.34, C:0.33, G:0.24, T:0.10
Consensus pattern (43 bp):
AAGCCTGCTAGGCACGAAGACCCGAATACACATCACCAGCACG
Found at i:25164519 original size:27 final size:27
Alignment explanation
Indices: 25164489--25164550 Score: 106
Period size: 27 Copynumber: 2.3 Consensus size: 27
25164479 AGCCTGCTAG
*
25164489 GCACGAAGGCCCGAATACACATCACCA
1 GCACGAAGGCCCAAATACACATCACCA
*
25164516 GCACGAAGGCCCAAATACACATCACCG
1 GCACGAAGGCCCAAATACACATCACCA
25164543 GCACGAAG
1 GCACGAAG
25164551 CCTGCTAGGC
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
27 33 1.00
ACGTcount: A:0.37, C:0.35, G:0.21, T:0.06
Consensus pattern (27 bp):
GCACGAAGGCCCAAATACACATCACCA
Found at i:25164559 original size:70 final size:70
Alignment explanation
Indices: 25164446--25164593 Score: 251
Period size: 70 Copynumber: 2.1 Consensus size: 70
25164436 AGCCTGCTAG
* *
25164446 GCACGAAGACCCGAATACACATCATCGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACACAT
1 GCACGAAGACCCAAATACACATCACCGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACACAT
25164511 CACCA
66 CACCA
* **
25164516 GCACGAAGGCCCAAATACACATCACCGGCACGAAGCCTGCTAGGCACGAAGGCTTGAATACACAT
1 GCACGAAGACCCAAATACACATCACCGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACACAT
25164581 CACCA
66 CACCA
25164586 GCACGAAG
1 GCACGAAG
25164594 CCTACTAGGC
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
70 73 1.00
ACGTcount: A:0.34, C:0.33, G:0.22, T:0.10
Consensus pattern (70 bp):
GCACGAAGACCCAAATACACATCACCGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACACAT
CACCA
Found at i:25164563 original size:43 final size:43
Alignment explanation
Indices: 25164516--25164671 Score: 240
Period size: 43 Copynumber: 3.6 Consensus size: 43
25164506 CACATCACCA
*
25164516 GCACGAAGGCCCAAATACACATCACCGGCACGAAGCCTGCTAG
1 GCACGAAGGCCCGAATACACATCACCGGCACGAAGCCTGCTAG
** * *
25164559 GCACGAAGGCTTGAATACACATCACCAGCACGAAGCCTACTAG
1 GCACGAAGGCCCGAATACACATCACCGGCACGAAGCCTGCTAG
* * *
25164602 GCACGAAGGCTCGAATACACATCACTGGCACGTAGCCTGCTAG
1 GCACGAAGGCCCGAATACACATCACCGGCACGAAGCCTGCTAG
25164645 GCACGAAGGCCCGAATACACATCACCG
1 GCACGAAGGCCCGAATACACATCACCG
25164672 AGTTTCATGC
Statistics
Matches: 101, Mismatches: 12, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
43 101 1.00
ACGTcount: A:0.32, C:0.33, G:0.23, T:0.12
Consensus pattern (43 bp):
GCACGAAGGCCCGAATACACATCACCGGCACGAAGCCTGCTAG
Found at i:25164633 original size:113 final size:113
Alignment explanation
Indices: 25164423--25164626 Score: 327
Period size: 113 Copynumber: 1.8 Consensus size: 113
25164413 CCTTGCTCGA
** * * *
25164423 ATCACCGGCATTAAGCCTGCTAGGCACGAAGACCCGAATACACATCATCGGCACGAAGCCTGCTA
1 ATCACCGGCACGAAGCCTGCTAGGCACGAAGACCCGAATACACATCACCAGCACGAAGCCTACTA
25164488 GGCACGAAGGCCCGAATACACATCACCAGCACGAAGGCCCAAATACAC
66 GGCACGAAGGCCCGAATACACATCACCAGCACGAAGGCCCAAATACAC
* **
25164536 ATCACCGGCACGAAGCCTGCTAGGCACGAAGGCTTGAATACACATCACCAGCACGAAGCCTACTA
1 ATCACCGGCACGAAGCCTGCTAGGCACGAAGACCCGAATACACATCACCAGCACGAAGCCTACTA
*
25164601 GGCACGAAGGCTCGAATACACATCAC
66 GGCACGAAGGCCCGAATACACATCAC
25164627 TGGCACGTAG
Statistics
Matches: 82, Mismatches: 9, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
113 82 1.00
ACGTcount: A:0.33, C:0.33, G:0.22, T:0.12
Consensus pattern (113 bp):
ATCACCGGCACGAAGCCTGCTAGGCACGAAGACCCGAATACACATCACCAGCACGAAGCCTACTA
GGCACGAAGGCCCGAATACACATCACCAGCACGAAGGCCCAAATACAC
Found at i:25169909 original size:25 final size:25
Alignment explanation
Indices: 25169880--25169927 Score: 78
Period size: 25 Copynumber: 1.9 Consensus size: 25
25169870 TTATAACATG
* *
25169880 AAAATGACCATTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
25169905 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
25169928 GTTTATATAT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.35, C:0.25, G:0.15, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:25169993 original size:20 final size:20
Alignment explanation
Indices: 25169970--25170010 Score: 73
Period size: 20 Copynumber: 2.0 Consensus size: 20
25169960 ATAAACATTG
25169970 TATGGATGATATGCACATGA
1 TATGGATGATATGCACATGA
*
25169990 TATGTATGATATGCACATGA
1 TATGGATGATATGCACATGA
25170010 T
1 T
25170011 GTATTCATAA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.34, C:0.10, G:0.22, T:0.34
Consensus pattern (20 bp):
TATGGATGATATGCACATGA
Found at i:25170116 original size:24 final size:24
Alignment explanation
Indices: 25170060--25170230 Score: 256
Period size: 24 Copynumber: 7.2 Consensus size: 24
25170050 GAGGAAGTGA
*
25170060 AAAAGGGCTTATGCCCCAATTAT-
1 AAAAGGGCTTATGCCCCAGTTATC
* *
25170083 TAAAGGGCTTATGCCCCAATTATC
1 AAAAGGGCTTATGCCCCAGTTATC
25170107 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
25170131 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
*
25170155 AAAAGGGCTTACGCCCCAGTTAT-
1 AAAAGGGCTTATGCCCCAGTTATC
* *
25170178 TAAAGGGCTTATGCCCCAGTTATA
1 AAAAGGGCTTATGCCCCAGTTATC
* *
25170202 AAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATC
25170226 AAAAG
1 AAAAG
25170231 AGGCAAGGCC
Statistics
Matches: 137, Mismatches: 9, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
23 43 0.31
24 94 0.69
ACGTcount: A:0.31, C:0.23, G:0.20, T:0.26
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATC
Found at i:25170183 original size:71 final size:71
Alignment explanation
Indices: 25170059--25170230 Score: 256
Period size: 71 Copynumber: 2.4 Consensus size: 71
25170049 GGAGGAAGTG
* * *
25170059 AAAAAGGGCTTATGCCCCAATTATTAAAGGGCTTATGCCCCAATTATCAAAAGGGCTTATGCCCC
1 AAAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTACGCCCCAATTATCAAAAGGGCTTATGCCCC
25170124 AGTTAT
66 AGTTAT
* * *
25170130 CAAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTACGCCCCAGTTAT-TAAAGGGCTTATGCCC
1 AAAAAGGGCTTATGCCCCAGTTAT-AAAAGGGCTTACGCCCCAATTATCAAAAGGGCTTATGCCC
25170194 CAGTTAT
65 CAGTTAT
*
25170201 AAAAAGGGCTTTTGCCCCAGTTATTAAAAG
1 AAAAAGGGCTTATGCCCCAGTTA-TAAAAG
25170231 AGGCAAGGCC
Statistics
Matches: 91, Mismatches: 8, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
71 70 0.77
72 21 0.23
ACGTcount: A:0.31, C:0.23, G:0.20, T:0.26
Consensus pattern (71 bp):
AAAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTACGCCCCAATTATCAAAAGGGCTTATGCCCC
AGTTAT
Found at i:25170206 original size:47 final size:47
Alignment explanation
Indices: 25170059--25170228 Score: 268
Period size: 47 Copynumber: 3.6 Consensus size: 47
25170049 GGAGGAAGTG
* *
25170059 AAAAAGGGCTTATGCCCCAATTATTAAAGGGCTTATGCCCCAATTAT
1 AAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTAT
* *
25170106 CAAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTAT
1 AAAAAGGGCTTATGCCCCAGTTAT-TAAAGGGCTTATGCCCCAGTTAT
* *
25170154 CAAAAGGGCTTACGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTAT
1 AAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTAT
*
25170201 AAAAAGGGCTTTTGCCCCAGTTATTAAA
1 AAAAAGGGCTTATGCCCCAGTTATTAAA
25170229 AGAGGCAAGG
Statistics
Matches: 113, Mismatches: 9, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
47 69 0.61
48 44 0.39
ACGTcount: A:0.31, C:0.23, G:0.19, T:0.26
Consensus pattern (47 bp):
AAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTAT
Found at i:25170478 original size:31 final size:31
Alignment explanation
Indices: 25170443--25170506 Score: 92
Period size: 31 Copynumber: 2.1 Consensus size: 31
25170433 CGTTTACAGT
*
25170443 AAAGGCTTCGGCCCAGTAATATGAAATTTGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
* **
25170474 AAAGGCTTTGGCCCAGTGTTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
25170505 AA
1 AA
25170507 TATGAAAAGG
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.36, C:0.14, G:0.23, T:0.27
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:25171992 original size:70 final size:70
Alignment explanation
Indices: 25171914--25172052 Score: 251
Period size: 70 Copynumber: 2.0 Consensus size: 70
25171904 AATAATGACC
* *
25171914 ATATCAATAAACTACTTAAAAGAATATCAGTTCATTATTATACATATAAAATATGCTTATTTTGC
1 ATATCAATAAACTACTTAAAAAAATATCAATTCATTATTATACATATAAAATATGCTTATTTTGC
25171979 TCACT
66 TCACT
*
25171984 ATATCAATAAACTACTTAAAAAAATATCAATTTATTATTATACATATAAAATATGCTTATTTTGC
1 ATATCAATAAACTACTTAAAAAAATATCAATTCATTATTATACATATAAAATATGCTTATTTTGC
25172049 TCAC
66 TCAC
25172053 CAAAACCATC
Statistics
Matches: 66, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
70 66 1.00
ACGTcount: A:0.43, C:0.14, G:0.04, T:0.39
Consensus pattern (70 bp):
ATATCAATAAACTACTTAAAAAAATATCAATTCATTATTATACATATAAAATATGCTTATTTTGC
TCACT
Found at i:25180793 original size:42 final size:42
Alignment explanation
Indices: 25180746--25180851 Score: 140
Period size: 42 Copynumber: 2.5 Consensus size: 42
25180736 TGAGTTATCA
* * * * *
25180746 TGTAAGACCATATTTGGGATATGGTGTTGATATGATATTTCG
1 TGTAAGACCATATCTGGGATATGGCGTTGAAATGAGAATTCG
* *
25180788 TGTAAGACCACATCTGGGACATGGCGTTGAAATGAGAATTCG
1 TGTAAGACCATATCTGGGATATGGCGTTGAAATGAGAATTCG
*
25180830 TATAAGACCATATCTGGGATAT
1 TGTAAGACCATATCTGGGATAT
25180852 AGCATCGATG
Statistics
Matches: 54, Mismatches: 10, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
42 54 1.00
ACGTcount: A:0.30, C:0.12, G:0.25, T:0.32
Consensus pattern (42 bp):
TGTAAGACCATATCTGGGATATGGCGTTGAAATGAGAATTCG
Found at i:25186701 original size:38 final size:38
Alignment explanation
Indices: 25186645--25186724 Score: 115
Period size: 38 Copynumber: 2.1 Consensus size: 38
25186635 GATGTGTATT
* * * *
25186645 CGGGTTAAATCCCGCAGGCTTCGTGCTGGTATTATATC
1 CGGGATAAATCCCACAGGCCTAGTGCTGGTATTATATC
*
25186683 CGGGATAAATCCCACAGGCCTAGTGCTGGTATTATATT
1 CGGGATAAATCCCACAGGCCTAGTGCTGGTATTATATC
25186721 CGGG
1 CGGG
25186725 CCTTCATGCC
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
38 37 1.00
ACGTcount: A:0.21, C:0.23, G:0.28, T:0.29
Consensus pattern (38 bp):
CGGGATAAATCCCACAGGCCTAGTGCTGGTATTATATC
Found at i:25186770 original size:43 final size:43
Alignment explanation
Indices: 25186717--25186871 Score: 238
Period size: 43 Copynumber: 3.6 Consensus size: 43
25186707 GCTGGTATTA
* *
25186717 TATTCGGGCCTTCATGCCTAGCAGGCTTAGTGCCAGTGATGTG
1 TATTCGGGCCTTCATGCCTAGCAGGCTTCGTGCCGGTGATGTG
* *
25186760 TATTCGGGCCTTCGTACCTAGCAGGCTTCGTGCCGGTGATGTG
1 TATTCGGGCCTTCATGCCTAGCAGGCTTCGTGCCGGTGATGTG
* * *
25186803 TATTCAGGCCTTCGTGCCTAGCAGGCTTCGTGTCGGTGATGTG
1 TATTCGGGCCTTCATGCCTAGCAGGCTTCGTGCCGGTGATGTG
*
25186846 TATTCGGGCCTTCATTCCTAGCAGGC
1 TATTCGGGCCTTCATGCCTAGCAGGC
25186872 GTAATGCCGG
Statistics
Matches: 102, Mismatches: 10, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
43 102 1.00
ACGTcount: A:0.14, C:0.25, G:0.30, T:0.31
Consensus pattern (43 bp):
TATTCGGGCCTTCATGCCTAGCAGGCTTCGTGCCGGTGATGTG
Found at i:25187268 original size:45 final size:42
Alignment explanation
Indices: 25187201--25187308 Score: 119
Period size: 45 Copynumber: 2.5 Consensus size: 42
25187191 TTGACTTGAT
* * *
25187201 TATTCGGGCCTTTGAGCTTAGCAAACTATAATGCTGGTGAGGTAC
1 TATTCGGGCCTTCGAGCCTAGCAAACTATAATGCCGGTGA---AC
**
25187246 TATTCGGGCCTTCGAGCCTAGCAGGCTATAATGCCGGTGAAC
1 TATTCGGGCCTTCGAGCCTAGCAAACTATAATGCCGGTGAAC
25187288 TGATATCGGGCC-TCGAGCCTA
1 T-AT-TCGGGCCTTCGAGCCTA
25187309 ACAGGCGAAA
Statistics
Matches: 56, Mismatches: 5, Indels: 6
0.84 0.07 0.09
Matches are distributed among these distances:
42 3 0.05
43 11 0.20
44 7 0.12
45 35 0.62
ACGTcount: A:0.22, C:0.23, G:0.28, T:0.27
Consensus pattern (42 bp):
TATTCGGGCCTTCGAGCCTAGCAAACTATAATGCCGGTGAAC
Found at i:25190523 original size:79 final size:79
Alignment explanation
Indices: 25190379--25190596 Score: 221
Period size: 79 Copynumber: 2.7 Consensus size: 79
25190369 AAATCACGTA
* ** * * * *
25190379 CCTTCGGAACTTAACCGGATATAGCTACTCGTTCAAATGCCTTCGGGACATAGCCCAG-TTATAG
1 CCTTCGGGACTTAACCGGATATAG-TACTCGCACCAATGCCTTCGGGACTTAGCCCGGAATATAG
25190443 TAACTCGCACAAATG
65 TAACTCGCACAAATG
*
25190458 CCTTCGGGACTTAACCCGGATTTAGTAACTCGCACCAATGCCTTCGGG-CTTAGCCCGGAAT-TA
1 CCTTCGGGACTTAA-CCGGATATAGT-ACTCGCACCAATGCCTTCGGGACTTAGCCCGGAATATA
*
25190521 GTATCTCGCACAAATG
64 GTAACTCGCACAAATG
* * * *
25190537 CCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA-CAAAGCCTTCGGGACTTAGCCCGGA
1 CCTTCGGGA-CTTA-ACCGGATATAGT-AC-TCGCACCAATGCCTTCGGGACTTAGCCCGGA
25190597 CATCATTCGA
Statistics
Matches: 117, Mismatches: 15, Indels: 13
0.81 0.10 0.09
Matches are distributed among these distances:
78 3 0.03
79 71 0.61
80 43 0.37
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (79 bp):
CCTTCGGGACTTAACCGGATATAGTACTCGCACCAATGCCTTCGGGACTTAGCCCGGAATATAGT
AACTCGCACAAATG
Done.