Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr3
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 100348136
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 3062571 characters in sequence are not A, C, G, or T
File 78 of 290
Found at i:25871636 original size:93 final size:93
Alignment explanation
Indices: 25871477--25871645 Score: 275
Period size: 93 Copynumber: 1.8 Consensus size: 93
25871467 ACCCATAAGT
* * *
25871477 GAACTCAGACTCAACTCAACGAGCTCGGGCGTTCACATCCATGAGTGAACTCAGACTCAACTCAA
1 GAACTCAGACTCAACTCAACGAGCTCGGACATTCACATCCATAAGTGAACTCAGACTCAACTCAA
25871542 CGAGTTCGGATACCTAGTTACATCTCAC
66 CGAGTTCGGATACCTAGTTACATCTCAC
* ** *
25871570 GAACTCAGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCAGACTCAACTCAACGAGCTCGGACATTCACATCCATAAGTGAACTCAGACTCAACTCAA
25871635 CGAGTTCGGAT
66 CGAGTTCGGAT
25871646 GCTCAACCAT
Statistics
Matches: 69, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 69 1.00
ACGTcount: A:0.31, C:0.28, G:0.19, T:0.22
Consensus pattern (93 bp):
GAACTCAGACTCAACTCAACGAGCTCGGACATTCACATCCATAAGTGAACTCAGACTCAACTCAA
CGAGTTCGGATACCTAGTTACATCTCAC
Found at i:25874062 original size:15 final size:15
Alignment explanation
Indices: 25874033--25874081 Score: 64
Period size: 15 Copynumber: 3.3 Consensus size: 15
25874023 CAAAGATAAC
*
25874033 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
25874047 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
* *
25874062 AAGAGATCCAGGATA
1 AAGAAATCCAGAATA
25874077 AAGAA
1 AAGAA
25874082 CCCCAAGATA
Statistics
Matches: 30, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
14 8 0.27
15 22 0.73
ACGTcount: A:0.59, C:0.12, G:0.18, T:0.10
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:25885031 original size:25 final size:25
Alignment explanation
Indices: 25884992--25885041 Score: 66
Period size: 25 Copynumber: 2.0 Consensus size: 25
25884982 ATGATGGTAC
**
25884992 ATGATATATTGATATTTTGAAATGG
1 ATGATATATTGATATAATGAAATGG
25885017 ATGATATA-TGTATATAATGAAATGG
1 ATGATATATTG-ATATAATGAAATGG
25885042 TAAGATAATG
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
24 2 0.09
25 20 0.91
ACGTcount: A:0.40, C:0.00, G:0.20, T:0.40
Consensus pattern (25 bp):
ATGATATATTGATATAATGAAATGG
Found at i:25885838 original size:17 final size:16
Alignment explanation
Indices: 25885816--25885847 Score: 55
Period size: 17 Copynumber: 1.9 Consensus size: 16
25885806 TTCCAGATTA
25885816 TTGGAAGCTCGATCGGG
1 TTGGAAGCTC-ATCGGG
25885833 TTGGAAGCTCATCGG
1 TTGGAAGCTCATCGG
25885848 AGATTTTATC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 5 0.33
17 10 0.67
ACGTcount: A:0.19, C:0.19, G:0.38, T:0.25
Consensus pattern (16 bp):
TTGGAAGCTCATCGGG
Found at i:25885893 original size:13 final size:13
Alignment explanation
Indices: 25885877--25885902 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
25885867 AGCGATTAAA
25885877 TCAATAGATTTTG
1 TCAATAGATTTTG
25885890 TCAATAGATTTTG
1 TCAATAGATTTTG
25885903 ATATCTTGGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.08, G:0.15, T:0.46
Consensus pattern (13 bp):
TCAATAGATTTTG
Found at i:25891065 original size:25 final size:25
Alignment explanation
Indices: 25891035--25891084 Score: 75
Period size: 25 Copynumber: 2.0 Consensus size: 25
25891025 ATGATGGTAC
*
25891035 ATGATATAT-TGATATATTGAAATGG
1 ATGATATATGTG-TATAATGAAATGG
25891060 ATGATATATGTGTATAATGAAATGG
1 ATGATATATGTGTATAATGAAATGG
25891085 TAAGATAATG
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 21 0.91
26 2 0.09
ACGTcount: A:0.40, C:0.00, G:0.22, T:0.38
Consensus pattern (25 bp):
ATGATATATGTGTATAATGAAATGG
Found at i:25892861 original size:46 final size:46
Alignment explanation
Indices: 25892794--25892915 Score: 172
Period size: 46 Copynumber: 2.7 Consensus size: 46
25892784 CGCCCCTAAG
* * * *
25892794 TGAACTCAGACTCAACTCAACGAGCTCGGGCGCTCGCATCCATAAA
1 TGAACTCGGACTCAACTCAACGAGTTCGGACACTCGCATCCATAAA
* * *
25892840 TGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAG
1 TGAACTCGGACTCAACTCAACGAGTTCGGACACTCGCATCCATAAA
*
25892886 TGAACTCGGACTCAACTAAACGAGTTCGGA
1 TGAACTCGGACTCAACTCAACGAGTTCGGA
25892916 TGCTCAACCA
Statistics
Matches: 68, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
46 68 1.00
ACGTcount: A:0.31, C:0.28, G:0.20, T:0.20
Consensus pattern (46 bp):
TGAACTCGGACTCAACTCAACGAGTTCGGACACTCGCATCCATAAA
Found at i:25892934 original size:46 final size:45
Alignment explanation
Indices: 25892792--25892934 Score: 121
Period size: 46 Copynumber: 3.1 Consensus size: 45
25892782 CCCGCCCCTA
* * ** *
25892792 AGTGAACTCAGACTCAACTCAACGAGCTCGGGCGCTC-GCATCCAT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCACCATCC-T
* ***
25892837 AAATGAACTCGGACTCAACTCAACGAGTTCGGA--CATTTGCATCCAT
1 -AGTGAACTCGGACTCAACTCAACGAGTTCGGATGC-TCACCATCC-T
*
25892883 AAGTGAACTCGGACTCAACTAAACGAGTTCGGATGCTCAACCATCCT
1 -AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTC-ACCATCCT
25892930 AGTGA
1 AGTGA
25892935 CATGTCACTT
Statistics
Matches: 82, Mismatches: 10, Indels: 10
0.80 0.10 0.10
Matches are distributed among these distances:
44 1 0.01
45 1 0.01
46 72 0.88
47 2 0.02
48 6 0.07
ACGTcount: A:0.31, C:0.28, G:0.20, T:0.21
Consensus pattern (45 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCACCATCCT
Found at i:25893372 original size:30 final size:30
Alignment explanation
Indices: 25893338--25893397 Score: 84
Period size: 30 Copynumber: 2.0 Consensus size: 30
25893328 ATTTAATATG
25893338 AACTTTTAAAAAATTACACTTTTGCCCCTA
1 AACTTTTAAAAAATTACACTTTTGCCCCTA
** **
25893368 AACTTTTGCATTATTACACTTTTGCCCCTA
1 AACTTTTAAAAAATTACACTTTTGCCCCTA
25893398 GGCTCTAGAA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.30, C:0.25, G:0.05, T:0.40
Consensus pattern (30 bp):
AACTTTTAAAAAATTACACTTTTGCCCCTA
Found at i:25900097 original size:19 final size:20
Alignment explanation
Indices: 25900073--25900110 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
25900063 GCTACCACCA
25900073 AAACAT-ATATCA-CATCTTT
1 AAACATCAT-TCATCATCTTT
25900092 AAACATCATTCATCATCTT
1 AAACATCATTCATCATCTT
25900111 ACCACCTTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.39, C:0.24, G:0.00, T:0.37
Consensus pattern (20 bp):
AAACATCATTCATCATCTTT
Found at i:25900455 original size:93 final size:93
Alignment explanation
Indices: 25900340--25900510 Score: 272
Period size: 93 Copynumber: 1.8 Consensus size: 93
25900330 GCCCCTAAGT
* *
25900340 GAACTCGGACTCAACTCAACGAGCTC-AGGCGGTCGCATCCATAAATGAACTCGGACTCAACTCA
1 GAACTCGGACTCAACTCAACGAGCTCGA-ACAGTCGCATCCATAAATGAACTCGGACTCAACTCA
25900404 ACGAGTTCGGATGCCTAGTTACATCTCAC
65 ACGAGTTCGGATGCCTAGTTACATCTCAC
* * * *
25900433 GAACTCGGACTCAACTCAACGAGTTCGAACATTTGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGAACAGTCGCATCCATAAATGAACTCGGACTCAACTCAA
25900498 CGAGTTCGGATGC
66 CGAGTTCGGATGC
25900511 TCAACCATCC
Statistics
Matches: 71, Mismatches: 6, Indels: 2
0.90 0.08 0.03
Matches are distributed among these distances:
93 70 0.99
94 1 0.01
ACGTcount: A:0.30, C:0.29, G:0.20, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGAACAGTCGCATCCATAAATGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:25900500 original size:46 final size:47
Alignment explanation
Indices: 25900335--25900505 Score: 190
Period size: 46 Copynumber: 3.7 Consensus size: 47
25900325 AACCCGCCCC
* * * *
25900335 TAAGTGAACTCGGACTCAACTCAACGAGCTC-AGGCGGTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGAGACAGTTGCATCCA
* * *
25900381 TAAATGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTC-GA-GAC-AGTTGCATCCA
* * *
25900429 TCA-CGAACTCGGACTCAACTCAACGAGTTCGA-ACATTTGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGAGACAGTTGCATCCA
25900474 TAAGTGAACTCGGACTCAACTCAACGAGTTCG
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCG
25900506 GATGCTCAAC
Statistics
Matches: 105, Mismatches: 13, Indels: 14
0.80 0.10 0.11
Matches are distributed among these distances:
43 6 0.06
44 2 0.02
45 2 0.02
46 58 0.55
47 26 0.25
48 3 0.03
49 3 0.03
50 5 0.05
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.22
Consensus pattern (47 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGAGACAGTTGCATCCA
Found at i:25904789 original size:140 final size:140
Alignment explanation
Indices: 25904537--25904815 Score: 472
Period size: 140 Copynumber: 2.0 Consensus size: 140
25904527 GAGAAATTGT
*
25904537 ATGGAAAATGTATGAAAGAAAGTGTGCTTGAGTTGATTGTGAATAAATGATATTCGGGTTTCTAG
1 ATGGAAAATGTATGAAAGAAAGTGTGCTTGAGTTGATTATGAATAAATGATATTCGGGTTTCTAG
*
25904602 CCTAGTAGGCTATGTGCTAGAGAATTGTATCGGGCTTCGTCCCTAGCAGGCTTATTGCCAGTGAA
66 CCTAGCAGGCTATGTGCTAGAGAATTGTATCGGGCTTCGTCCCTAGCAGGCTTATTGCCAGTGAA
25904667 TAAATATCAA
131 TAAATATCAA
* *
25904677 ATGGAAAATGTATGAATGAAAGTGTGCTTGAGTTGATTATGAATAAATGATATTCTGGTTTCTAG
1 ATGGAAAATGTATGAAAGAAAGTGTGCTTGAGTTGATTATGAATAAATGATATTCGGGTTTCTAG
* *
25904742 CCTAGCAGGCTATGTG-TCAGAGAATT-TGATCGGGCTTCGTGCCTAGCAGGCTTCTTGCCAGTG
66 CCTAGCAGGCTATGTGCT-AGAGAATTGT-ATCGGGCTTCGTCCCTAGCAGGCTTATTGCCAGTG
25904805 AATAAATATCA
129 AATAAATATCA
25904816 GACCTTGGGT
Statistics
Matches: 131, Mismatches: 6, Indels: 4
0.93 0.04 0.03
Matches are distributed among these distances:
139 2 0.02
140 129 0.98
ACGTcount: A:0.29, C:0.13, G:0.25, T:0.32
Consensus pattern (140 bp):
ATGGAAAATGTATGAAAGAAAGTGTGCTTGAGTTGATTATGAATAAATGATATTCGGGTTTCTAG
CCTAGCAGGCTATGTGCTAGAGAATTGTATCGGGCTTCGTCCCTAGCAGGCTTATTGCCAGTGAA
TAAATATCAA
Found at i:25926445 original size:42 final size:42
Alignment explanation
Indices: 25926386--25926479 Score: 188
Period size: 42 Copynumber: 2.2 Consensus size: 42
25926376 TCCCAAAAAT
25926386 ATCACACGGCCAATGTACACGCCCGTGTACTAGGCCGTGTCC
1 ATCACACGGCCAATGTACACGCCCGTGTACTAGGCCGTGTCC
25926428 ATCACACGGCCAATGTACACGCCCGTGTACTAGGCCGTGTCC
1 ATCACACGGCCAATGTACACGCCCGTGTACTAGGCCGTGTCC
25926470 ATCACACGGC
1 ATCACACGGC
25926480 TGAGACACAC
Statistics
Matches: 52, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
42 52 1.00
ACGTcount: A:0.22, C:0.36, G:0.23, T:0.18
Consensus pattern (42 bp):
ATCACACGGCCAATGTACACGCCCGTGTACTAGGCCGTGTCC
Found at i:25927564 original size:48 final size:46
Alignment explanation
Indices: 25927434--25927606 Score: 197
Period size: 46 Copynumber: 3.7 Consensus size: 46
25927424 TCTCATAGCA
* *
25927434 GATGCATGTCCCAGACACGTCTTATACTAGCT-TACATCTCAAGGCC
1 GATGCATGTCCCAGACATGTCTTACACTAGCTCT-CATCTCAAGGCC
* *
25927480 GATGCATGTCCCAGACATGTCTTACACTAGCGCTCATCTCAATGCC
1 GATGCATGTCCCAGACATGTCTTACACTAGCTCTCATCTCAAGGCC
* * ** *
25927526 GGTGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATAAT-GTGGCT
1 GATG-CATGTCCCAGACAT-GTCTTACACTAGCTCTCAT-CTCAAGGCC
* *
25927574 GATGCATATCCCAAACATGTCTTACACTAGCTC
1 GATGCATGTCCCAGACATGTCTTACACTAGCTC
25927607 ATAATAACCC
Statistics
Matches: 109, Mismatches: 14, Indels: 8
0.83 0.11 0.06
Matches are distributed among these distances:
46 58 0.53
47 27 0.25
48 23 0.21
49 1 0.01
ACGTcount: A:0.25, C:0.30, G:0.18, T:0.27
Consensus pattern (46 bp):
GATGCATGTCCCAGACATGTCTTACACTAGCTCTCATCTCAAGGCC
Found at i:25930807 original size:64 final size:64
Alignment explanation
Indices: 25930727--25930910 Score: 185
Period size: 67 Copynumber: 2.8 Consensus size: 64
25930717 AGACATTATG
* * *
25930727 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAGGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * * *
25930791 ATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
25930856 AA
63 AA
* * * *
25930858 AT-TGGCTAGGTCACATGGGTGGTACTGA-GTGTTCACCATGT-GTACAAGAGAGC
1 ATGTAGCTAGGTCGCATGGGTGATACT-ATGTGTACACCATGTAG-ACAAGAGAGC
25930911 CGAACTATAT
Statistics
Matches: 97, Mismatches: 18, Indels: 11
0.77 0.14 0.09
Matches are distributed among these distances:
62 1 0.01
63 19 0.20
64 21 0.22
65 7 0.07
66 18 0.19
67 31 0.32
ACGTcount: A:0.29, C:0.17, G:0.31, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:25937227 original size:14 final size:14
Alignment explanation
Indices: 25937208--25937236 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
25937198 CGAATAGACT
25937208 ATGAAAACATCCAA
1 ATGAAAACATCCAA
25937222 ATGAAAACATCCAA
1 ATGAAAACATCCAA
25937236 A
1 A
25937237 AACATCTTTA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.59, C:0.21, G:0.07, T:0.14
Consensus pattern (14 bp):
ATGAAAACATCCAA
Found at i:25942891 original size:47 final size:47
Alignment explanation
Indices: 25942838--25942937 Score: 173
Period size: 47 Copynumber: 2.1 Consensus size: 47
25942828 AGACAATGAT
*
25942838 ACCATGTTTGGAACATGGCATTTGGTAAGACAATGATACCATGTAAG
1 ACCATGTTTGGAACATGGCATTTGGTAAGACAAGGATACCATGTAAG
* *
25942885 ACCATGTTTGGAACATGGCATTTGGTAAGATAAGGATATCATGTAAG
1 ACCATGTTTGGAACATGGCATTTGGTAAGACAAGGATACCATGTAAG
25942932 ACCATG
1 ACCATG
25942938 CCAAGGCATG
Statistics
Matches: 50, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
47 50 1.00
ACGTcount: A:0.34, C:0.14, G:0.24, T:0.28
Consensus pattern (47 bp):
ACCATGTTTGGAACATGGCATTTGGTAAGACAAGGATACCATGTAAG
Found at i:25943045 original size:55 final size:54
Alignment explanation
Indices: 25942916--25943112 Score: 227
Period size: 54 Copynumber: 3.6 Consensus size: 54
25942906 TTGGTAAGAT
* * * *
25942916 AAGGATATCATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTCTATAAGGT
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATGAGTTCTATAAGGA
* * * * *
25942970 AAGGAAATCATGTAAGACCATGTCAAGACATGGAATTGATGAGTTACTTTAAGGAA
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATGAGTT-CTATAAGG-A
* * * *
25943026 AAGG-TCCCATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTC-ATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATGAGTTCTATAAGGA
* *
25943078 AAGGATACCACGTAAGACCATGTCAAGACATGGCA
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCA
25943113 ATGGTAAGTT
Statistics
Matches: 120, Mismatches: 20, Indels: 7
0.82 0.14 0.05
Matches are distributed among these distances:
52 4 0.03
53 31 0.26
54 41 0.34
55 40 0.33
56 4 0.03
ACGTcount: A:0.36, C:0.17, G:0.25, T:0.22
Consensus pattern (54 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATGAGTTCTATAAGGA
Found at i:25943142 original size:108 final size:109
Alignment explanation
Indices: 25942924--25943147 Score: 301
Period size: 108 Copynumber: 2.1 Consensus size: 109
25942914 ATAAGGATAT
* * *
25942924 CATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTCTATAAGGTAAGGAAATCATGTAAGACC
1 CATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTCTATAAGGCAAGGAAACCACGTAAGACC
* ***
25942989 ATGTCAAGACATGGAATTGATGAGTTACTTTAAGGAAAAGGTCC
66 ATGTCAAGACATGGAATTGATAAGTTACAAAAAGGAAAAGGTCC
* * *
25943033 CATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTC-ATAAGGCAAGGATACCACGTAAGACC
1 CATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTCTATAAGGCAAGGAAACCACGTAAGACC
*
25943097 ATGTCAAGACATGGCAA-TGGTAAGTT-CAAAAAGGAAAAGGTTCC
66 ATGTCAAGACATGG-AATTGATAAGTTACAAAAAGGAAAAGG-TCC
*
25943141 CAAGTAA
1 CATGTAA
25943148 TCCAAAGACC
Statistics
Matches: 101, Mismatches: 12, Indels: 5
0.86 0.10 0.04
Matches are distributed among these distances:
107 11 0.11
108 52 0.51
109 38 0.38
ACGTcount: A:0.37, C:0.17, G:0.25, T:0.22
Consensus pattern (109 bp):
CATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTCTATAAGGCAAGGAAACCACGTAAGACC
ATGTCAAGACATGGAATTGATAAGTTACAAAAAGGAAAAGGTCC
Found at i:25948787 original size:47 final size:47
Alignment explanation
Indices: 25948706--25948911 Score: 279
Period size: 47 Copynumber: 4.4 Consensus size: 47
25948696 AATGTGAAAG
*
25948706 TGTATATGTGTGAATAGGGCCGAATGGCCAATGTGATGAAAGTGAACA
1 TGTATATGTGTG-ATAAGGCCGAATGGCCAATGTGATGAAAGTGAACA
25948754 TGTATATGTGTGATAAGGCCGAATGGCCAATGTGATGAAAGTGAACA
1 TGTATATGTGTGATAAGGCCGAATGGCCAATGTGATGAAAGTGAACA
* * * *
25948801 TGTGTATGTGTGATAAGGCCGAGTGGCCAATGTGATGAATGTGAGCA
1 TGTATATGTGTGATAAGGCCGAATGGCCAATGTGATGAAAGTGAACA
* * * * *
25948848 TGTGTATGTGAGATAAGGCCTAATGGCCGATGTGATGAATGTGAA-A
1 TGTATATGTGTGATAAGGCCGAATGGCCAATGTGATGAAAGTGAACA
**
25948894 GTGTATAAATGTGATAAG
1 -TGTATATGTGTGATAAG
25948912 TCCCGAAGGG
Statistics
Matches: 143, Mismatches: 14, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
46 1 0.01
47 130 0.91
48 12 0.08
ACGTcount: A:0.32, C:0.09, G:0.32, T:0.27
Consensus pattern (47 bp):
TGTATATGTGTGATAAGGCCGAATGGCCAATGTGATGAAAGTGAACA
Found at i:25949086 original size:37 final size:37
Alignment explanation
Indices: 25949030--25949109 Score: 99
Period size: 37 Copynumber: 2.2 Consensus size: 37
25949020 CCGGGCTCTA
* * *
25949030 AAGACCCGATGACTGCGTGTGG-GAATTTTGTACGGGT
1 AAGACTCGATAACTGCGTGTGGAG-ATTATGTACGGGT
* *
25949067 AAGACTCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACTCGATAACTGCGTGTGGAGATTATGTACGGGT
25949104 AAGACT
1 AAGACT
25949110 TCGTAATAAG
Statistics
Matches: 37, Mismatches: 5, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
37 36 0.97
38 1 0.03
ACGTcount: A:0.25, C:0.16, G:0.31, T:0.28
Consensus pattern (37 bp):
AAGACTCGATAACTGCGTGTGGAGATTATGTACGGGT
Found at i:25954457 original size:44 final size:44
Alignment explanation
Indices: 25954392--25954478 Score: 122
Period size: 44 Copynumber: 2.0 Consensus size: 44
25954382 TTGATATCTC
* *
25954392 AAAGTCCATGGTTGTACCATGGCAATTAAGGAAGAATTGACGGA
1 AAAGTCCATGGTTATAACATGGCAATTAAGGAAGAATTGACGGA
* *
25954436 AAAGTCCAT-GTTCATAACATGGCATTTAAGGAGGAATTGACGG
1 AAAGTCCATGGTT-ATAACATGGCAATTAAGGAAGAATTGACGG
25954479 TTAAGGATAC
Statistics
Matches: 38, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
43 3 0.08
44 35 0.92
ACGTcount: A:0.36, C:0.14, G:0.26, T:0.24
Consensus pattern (44 bp):
AAAGTCCATGGTTATAACATGGCAATTAAGGAAGAATTGACGGA
Found at i:25954674 original size:47 final size:47
Alignment explanation
Indices: 25954615--25954736 Score: 217
Period size: 47 Copynumber: 2.6 Consensus size: 47
25954605 GCATTGGCAC
25954615 TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
1 TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
25954662 TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
1 TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
* * *
25954709 TAAGATAAAGATATCATGTAAGACCATG
1 TAAGACAAGGATACCATGTAAGACCATG
25954737 CCAAGGCATG
Statistics
Matches: 72, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
47 72 1.00
ACGTcount: A:0.37, C:0.14, G:0.24, T:0.25
Consensus pattern (47 bp):
TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
Found at i:25954844 original size:55 final size:54
Alignment explanation
Indices: 25954718--25954911 Score: 248
Period size: 55 Copynumber: 3.6 Consensus size: 54
25954708 GTAAGATAAA
* * *
25954718 GATATCATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTCTATAAGGCAAG
1 GATACCATGTAAGACCATGCCAAGACATGGCATTGATGAGTTCTATAAGGCAAG
* * *
25954772 GAAATCATGTAAGACCATGTCAAGACATGGCATTGATGAGTTACTATAAGGCAAAG
1 GATACCATGTAAGACCATGCCAAGACATGGCATTGATGAGTT-CTATAAGGC-AAG
* * *
25954828 G-TCCCATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTC-ATAAGGCAAG
1 GATACCATGTAAGACCATGCCAAGACATGGCATTGATGAGTTCTATAAGGCAAG
** *
25954880 GATACCACATAAGACCATGTCAAGACATGGCA
1 GATACCATGTAAGACCATGCCAAGACATGGCA
25954912 ATGGTAAGTT
Statistics
Matches: 122, Mismatches: 15, Indels: 7
0.85 0.10 0.05
Matches are distributed among these distances:
52 4 0.03
53 32 0.26
54 39 0.32
55 43 0.35
56 4 0.03
ACGTcount: A:0.36, C:0.19, G:0.24, T:0.22
Consensus pattern (54 bp):
GATACCATGTAAGACCATGCCAAGACATGGCATTGATGAGTTCTATAAGGCAAG
Found at i:25965725 original size:47 final size:47
Alignment explanation
Indices: 25965667--25966008 Score: 558
Period size: 47 Copynumber: 7.3 Consensus size: 47
25965657 ACAAGATATG
*
25965667 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
* *
25965714 TATATGAGATAAGACCTAATGGCCAATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
25965761 TATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
* *
25965808 TATATGTGACAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
*
25965855 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
* * * * *
25965902 TATATGAGATAAGACCTAATGGCCGATGTGATGGATGTGAAGGTGTA
1 TATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
* *
25965949 TATATGTGATAAGGCCGAATGGCCAATGTGATGGATGTGAAAGTGTA
1 TATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
*
25965996 TAAATGTGATAAG
1 TATATGTGATAAG
25966009 TCCCGAAGGG
Statistics
Matches: 273, Mismatches: 22, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
47 273 1.00
ACGTcount: A:0.34, C:0.08, G:0.29, T:0.28
Consensus pattern (47 bp):
TATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
Found at i:25965767 original size:25 final size:25
Alignment explanation
Indices: 25965739--25965816 Score: 72
Period size: 25 Copynumber: 3.2 Consensus size: 25
25965729 CTAATGGCCA
25965739 ATGTGATGAATGTGAAAGTGTATAT
1 ATGTGATGAATGTGAAAGTGTATAT
* *** ***
25965764 ATGTGAT-AAGGCCTAA-TGGCCA-
1 ATGTGATGAATGTGAAAGTGTATAT
25965786 ATGTGATGAATGTGAAAGTGTATAT
1 ATGTGATGAATGTGAAAGTGTATAT
25965811 ATGTGA
1 ATGTGA
25965817 CAAGGCCTAA
Statistics
Matches: 36, Mismatches: 14, Indels: 6
0.64 0.25 0.11
Matches are distributed among these distances:
22 7 0.19
23 8 0.22
24 8 0.22
25 13 0.36
ACGTcount: A:0.35, C:0.05, G:0.28, T:0.32
Consensus pattern (25 bp):
ATGTGATGAATGTGAAAGTGTATAT
Found at i:25967422 original size:50 final size:51
Alignment explanation
Indices: 25967340--25967472 Score: 153
Period size: 51 Copynumber: 2.6 Consensus size: 51
25967330 TGTTACAACG
** * * *
25967340 TGTGTAGTACTAAGTGTAGGCTACTACATGTACCAGAT-GGAT-AGGTCGCA
1 TGTGTAGTACTAAGTGTAGGCTACTATGTGTACCAGATAGCATCA-ATCACA
* * *
25967390 TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCCGATAGCTTCAATCACA
1 TGTGTAGTACTAAGTGTAGGCTACTATGTGTACCAGATAGCATCAATCACA
* *
25967441 TGTGTGGTACTAAGTGTAGGCCACTATGTGTA
1 TGTGTAGTACTAAGTGTAGGCTACTATGTGTA
25967473 AGAGATGGTT
Statistics
Matches: 70, Mismatches: 11, Indels: 3
0.83 0.13 0.04
Matches are distributed among these distances:
50 34 0.49
51 35 0.50
52 1 0.01
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (51 bp):
TGTGTAGTACTAAGTGTAGGCTACTATGTGTACCAGATAGCATCAATCACA
Found at i:25967490 original size:51 final size:51
Alignment explanation
Indices: 25967388--25967534 Score: 143
Period size: 51 Copynumber: 2.9 Consensus size: 51
25967378 GGATAGGTCG
* * * ***
25967388 CATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCCGATAGCTTCAATCA
1 CATGTGTGGTACTAAGTGAAGGCCACTATGTGTAAGAGATAGCTTCAATCA
* * * **
25967439 CATGTGTGGTACTAAGTGTAGGCCACTATGTGTAAGAGATGGTTTTGATCA
1 CATGTGTGGTACTAAGTGAAGGCCACTATGTGTAAGAGATAGCTTCAATCA
* * * *
25967490 CAAGTGTGGTACTATGTGAAGGCCACTTTGTG-AAGAAGGTAGCTT
1 CATGTGTGGTACTAAGTGAAGGCCACTATGTGTAAG-AGATAGCTT
25967535 TGCTGAGTAT
Statistics
Matches: 78, Mismatches: 17, Indels: 2
0.80 0.18 0.02
Matches are distributed among these distances:
50 3 0.04
51 75 0.96
ACGTcount: A:0.27, C:0.16, G:0.27, T:0.31
Consensus pattern (51 bp):
CATGTGTGGTACTAAGTGAAGGCCACTATGTGTAAGAGATAGCTTCAATCA
Found at i:25972367 original size:25 final size:26
Alignment explanation
Indices: 25972307--25972377 Score: 103
Period size: 26 Copynumber: 2.8 Consensus size: 26
25972297 AGGAAGTGCA
25972307 AAAAGGGCTTTTGCCCTAGTTTACCG
1 AAAAGGGCTTTTGCCCTAGTTTACCG
*
25972333 AAAAGGGCTTTTG-CCTCAGTTTATC-
1 AAAAGGGCTTTTGCCCT-AGTTTACCG
25972358 AAAAGGGC-TTTGCCCTAGTT
1 AAAAGGGCTTTTGCCCTAGTT
25972378 ATTAAAAGAG
Statistics
Matches: 42, Mismatches: 1, Indels: 6
0.86 0.02 0.12
Matches are distributed among these distances:
24 8 0.19
25 14 0.33
26 20 0.48
ACGTcount: A:0.24, C:0.21, G:0.23, T:0.32
Consensus pattern (26 bp):
AAAAGGGCTTTTGCCCTAGTTTACCG
Found at i:25976437 original size:93 final size:92
Alignment explanation
Indices: 25976277--25976462 Score: 354
Period size: 93 Copynumber: 2.0 Consensus size: 92
25976267 GAAGCCACCG
25976277 GGGTCAGTAACAGAAATCTGAAGTTTTCTGGGGTTGGCAGGTTATTATCAAAGATTTGTGGAAGG
1 GGGTCAGTAACAGAAATCTGAAGTTTTCTGGGGTTGGCAGGTTATTATCAAAGATTTGTGGAAGG
*
25976342 ATTTTCTGTGTTGGCAGCACCGTTAAC
66 ATTTTCTATGTTGGCAGCACCGTTAAC
25976369 GNGGTCAGTAACAGAAATCTGAAGTTTTCTGGGGTTGGCAGGTTATTATCAAAGATTTGTGGAAG
1 G-GGTCAGTAACAGAAATCTGAAGTTTTCTGGGGTTGGCAGGTTATTATCAAAGATTTGTGGAAG
25976434 GATTTTCTATGTTGGCAGCACCGTTAAC
65 GATTTTCTATGTTGGCAGCACCGTTAAC
25976462 G
1 G
25976463 AAACTTATAT
Statistics
Matches: 92, Mismatches: 1, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
92 1 0.01
93 91 0.99
ACGTcount: A:0.25, C:0.13, G:0.29, T:0.32
Consensus pattern (92 bp):
GGGTCAGTAACAGAAATCTGAAGTTTTCTGGGGTTGGCAGGTTATTATCAAAGATTTGTGGAAGG
ATTTTCTATGTTGGCAGCACCGTTAAC
Found at i:25982252 original size:20 final size:20
Alignment explanation
Indices: 25982227--25982293 Score: 109
Period size: 20 Copynumber: 3.4 Consensus size: 20
25982217 ATTCTGATAT
25982227 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
*
25982247 ACATGAT-TAGTGTGATATGC
1 ACATGATAT-GTATGATATGC
25982267 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
25982287 ACATGAT
1 ACATGAT
25982294 GTATTCATAA
Statistics
Matches: 43, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
19 1 0.02
20 41 0.95
21 1 0.02
ACGTcount: A:0.34, C:0.10, G:0.21, T:0.34
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:25982401 original size:25 final size:26
Alignment explanation
Indices: 25982341--25982408 Score: 106
Period size: 26 Copynumber: 2.7 Consensus size: 26
25982331 AGGAAGTGCA
25982341 AAAAGGGCTTTTGCCCCAGTTTTCCG
1 AAAAGGGCTTTTGCCCCAGTTTTCCG
25982367 AAAAGGGCTTTTGCCCCAGTTTAT-C-
1 AAAAGGGCTTTTGCCCCAGTTT-TCCG
25982392 AAAAGGGC-TTTGCCCCA
1 AAAAGGGCTTTTGCCCCA
25982409 ATTATTAAAA
Statistics
Matches: 41, Mismatches: 0, Indels: 4
0.91 0.00 0.09
Matches are distributed among these distances:
24 9 0.22
25 8 0.20
26 23 0.56
27 1 0.02
ACGTcount: A:0.24, C:0.26, G:0.22, T:0.28
Consensus pattern (26 bp):
AAAAGGGCTTTTGCCCCAGTTTTCCG
Found at i:25982424 original size:24 final size:24
Alignment explanation
Indices: 25982341--25982424 Score: 82
Period size: 26 Copynumber: 3.4 Consensus size: 24
25982331 AGGAAGTGCA
*
25982341 AAAAGGGCTTTTGCCCCAG-TTTTCC
1 AAAAGGGC-TTTGCCCCAGATTAT-C
*
25982366 GAAAAGGGCTTTTGCCCCAGTTTATC
1 -AAAAGGGC-TTTGCCCCAGATTATC
*
25982392 AAAAGGGCTTTGCCCCA-ATTATT
1 AAAAGGGCTTTGCCCCAGATTATC
25982415 AAAAGAGGCT
1 AAAAG-GGCT
25982425 AGGCCTCCAG
Statistics
Matches: 53, Mismatches: 3, Indels: 6
0.85 0.05 0.10
Matches are distributed among these distances:
23 9 0.17
24 13 0.25
25 8 0.15
26 20 0.38
27 3 0.06
ACGTcount: A:0.27, C:0.23, G:0.21, T:0.29
Consensus pattern (24 bp):
AAAAGGGCTTTGCCCCAGATTATC
Found at i:25982667 original size:31 final size:31
Alignment explanation
Indices: 25982632--25982695 Score: 92
Period size: 31 Copynumber: 2.1 Consensus size: 31
25982622 TGTTTACAGT
25982632 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
* * **
25982663 AAAGGGTTCGTCCCAGTGTTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
25982694 AA
1 AA
25982696 TATGAAAAAG
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.38, C:0.14, G:0.23, T:0.25
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:25984681 original size:14 final size:14
Alignment explanation
Indices: 25984662--25984689 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
25984652 CTTCGATGAG
25984662 TTAGAAGAAACTAT
1 TTAGAAGAAACTAT
25984676 TTAGAAGAAACTAT
1 TTAGAAGAAACTAT
25984690 GAGTGAGATG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.50, C:0.07, G:0.14, T:0.29
Consensus pattern (14 bp):
TTAGAAGAAACTAT
Found at i:25985617 original size:50 final size:51
Alignment explanation
Indices: 25985542--25985678 Score: 177
Period size: 50 Copynumber: 2.7 Consensus size: 51
25985532 TATGGATGAA
* *
25985542 TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGAGTACCAGAT-GG
1 TTAGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGAGTACCAGATAGC
* * * *
25985592 TTAGGTCACATGTGTATTACTAAGTGCAGGCTACTATGTGTACCCGATAGC
1 TTAGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGAGTACCAGATAGC
* * * *
25985643 TTCGATCACATGTGTGGTACTAAGTGCAGGCCACTA
1 TTAGGTCACATGTGTAGTACTAAGTGCAGGCTACTA
25985679 TGTGTAAGAG
Statistics
Matches: 75, Mismatches: 11, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
50 43 0.57
51 32 0.43
ACGTcount: A:0.26, C:0.20, G:0.26, T:0.28
Consensus pattern (51 bp):
TTAGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGAGTACCAGATAGC
Found at i:25985673 original size:51 final size:50
Alignment explanation
Indices: 25985542--25985733 Score: 186
Period size: 51 Copynumber: 3.8 Consensus size: 50
25985532 TATGGATGAA
* * * * *
25985542 TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGAGTACCAGATGG
1 TTAGATCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATGC
* * *
25985592 TTAGGTCACATGTGTATTACTAAGTGCAGGCTACTATGTGTACCCGATAGC
1 TTAGATCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGAT-GC
* * * ** *
25985643 TTCGATCACATGTGTGGTACTAAGTGCAGGCCACTATGTGTAAGAGATGGT
1 TTAGATCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGAT-GC
* * * * * *
25985694 TTTGATCACAAGTGTAGTACTATGTGAAGGCCACTTTGTG
1 TTAGATCACATGTGTAGTACTAAGTGCAGGCTACTATGTG
25985734 AAGAAGGTAG
Statistics
Matches: 119, Mismatches: 22, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
50 43 0.36
51 76 0.64
ACGTcount: A:0.26, C:0.17, G:0.27, T:0.30
Consensus pattern (50 bp):
TTAGATCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATGC
Found at i:25985749 original size:51 final size:51
Alignment explanation
Indices: 25985609--25985778 Score: 164
Period size: 51 Copynumber: 3.3 Consensus size: 51
25985599 ACATGTGTAT
* * *** * *
25985609 TACTAAGTGCAGGCTACTATGTGTACCCGATAGCTTCGATCACATGTGTGG
1 TACTATGTGCAGGCCACTATGTGTAAGAGATAGCTTTGATCACAAGTGTGG
* * * *
25985660 TACTAAGTGCAGGCCACTATGTGTAAGAGATGGTTTTGATCACAAGTGTAG
1 TACTATGTGCAGGCCACTATGTGTAAGAGATAGCTTTGATCACAAGTGTGG
* * * *
25985711 TACTATGTGAAGGCCACTTTGTG-AAGAAGGTAGCTTTGA-CTACAAGGGTGG
1 TACTATGTGCAGGCCACTATGTGTAAG-AGATAGCTTTGATC-ACAAGTGTGG
*
25985762 TACCATGTGCAGGCCAC
1 TACTATGTGCAGGCCAC
25985779 CGAGTATCCG
Statistics
Matches: 98, Mismatches: 19, Indels: 4
0.81 0.16 0.03
Matches are distributed among these distances:
50 4 0.04
51 94 0.96
ACGTcount: A:0.26, C:0.18, G:0.28, T:0.28
Consensus pattern (51 bp):
TACTATGTGCAGGCCACTATGTGTAAGAGATAGCTTTGATCACAAGTGTGG
Found at i:25996481 original size:176 final size:176
Alignment explanation
Indices: 25996187--25996540 Score: 699
Period size: 176 Copynumber: 2.0 Consensus size: 176
25996177 TTAATTCCAT
25996187 TTTTACTATTCTTGGTGATTTTTCAAGGTCACATCACTGCTGCTGTTCAATACTGTTTTAATGCT
1 TTTTACTATTCTTGGTGATTTTTCAAGGTCACATCACTGCTGCTGTTCAATACTGTTTTAATGCT
25996252 AATTTCACTTTTTCATGATTTCTTCATATTAACTACCATTTAGGCATACATAACACCGAAACATG
66 AATTTCACTTTTTCATGATTTCTTCATATTAACTACCATTTAGGCATACATAACACCGAAACATG
25996317 TTCTTCATTAGTCATTTCAATAGCTAATCATTATCAAATATTTACA
131 TTCTTCATTAGTCATTTCAATAGCTAATCATTATCAAATATTTACA
25996363 TTTTACTATTCTTGGTGATTTTTCAAGGTCACATCACTGCTGCTGTTCAATACTGTTTTAATGCT
1 TTTTACTATTCTTGGTGATTTTTCAAGGTCACATCACTGCTGCTGTTCAATACTGTTTTAATGCT
*
25996428 AATTTCACTTTTTCATGATTTCTTCGTATTAACTACCATTTAGGCATACATAACACCGAAACATG
66 AATTTCACTTTTTCATGATTTCTTCATATTAACTACCATTTAGGCATACATAACACCGAAACATG
25996493 TTCTTCATTAGTCATTTCAATAGCTAATCATTATCAAATATTTACA
131 TTCTTCATTAGTCATTTCAATAGCTAATCATTATCAAATATTTACA
25996539 TT
1 TT
25996541 CCATTCTTCA
Statistics
Matches: 177, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
176 177 1.00
ACGTcount: A:0.29, C:0.19, G:0.10, T:0.42
Consensus pattern (176 bp):
TTTTACTATTCTTGGTGATTTTTCAAGGTCACATCACTGCTGCTGTTCAATACTGTTTTAATGCT
AATTTCACTTTTTCATGATTTCTTCATATTAACTACCATTTAGGCATACATAACACCGAAACATG
TTCTTCATTAGTCATTTCAATAGCTAATCATTATCAAATATTTACA
Found at i:25997293 original size:55 final size:54
Alignment explanation
Indices: 25997169--25997417 Score: 288
Period size: 54 Copynumber: 4.6 Consensus size: 54
25997159 CTTACCATTT
* *
25997169 CCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTAT-GAACTCACCAATG
1 CCATGTCTTGGCATGGTCTTACATGGTATCCTTGCCTTATAGAACTCATCAATG
* *
25997222 TCATGCCTTGGCATGGTCTTACATTGG-A-CCTTTGCCTTATAGTAACTCATCAATG
1 CCATGTCTTGGCATGGTCTTACA-TGGTATCC-TTGCCTTATAG-AACTCATCAATG
* * * * * * * **
25997277 TCATGTCTTGACATGGTCTTACATGATTTTCTTGCCTTATAAAACTTATGGATG
1 CCATGTCTTGGCATGGTCTTACATGGTATCCTTGCCTTATAGAACTCATCAATG
* * *
25997331 CCATGTATTGGCATGGTCTTACATGGTTTCCTTGCCTTATAGAACTTATCAATG
1 CCATGTCTTGGCATGGTCTTACATGGTATCCTTGCCTTATAGAACTCATCAATG
* *
25997385 CCATGCCTTGGCATGGTCTTACATGATATCCTT
1 CCATGTCTTGGCATGGTCTTACATGGTATCCTT
25997418 ATCTTACCAA
Statistics
Matches: 165, Mismatches: 25, Indels: 11
0.82 0.12 0.05
Matches are distributed among these distances:
52 2 0.01
53 30 0.18
54 90 0.55
55 42 0.25
56 1 0.01
ACGTcount: A:0.22, C:0.22, G:0.18, T:0.38
Consensus pattern (54 bp):
CCATGTCTTGGCATGGTCTTACATGGTATCCTTGCCTTATAGAACTCATCAATG
Found at i:25997454 original size:47 final size:47
Alignment explanation
Indices: 25997396--25997517 Score: 190
Period size: 47 Copynumber: 2.6 Consensus size: 47
25997386 CATGCCTTGG
25997396 CATGGTCTTACATGATATCCTTATCTTACCAAATGCCATGTTCCAAA
1 CATGGTCTTACATGATATCCTTATCTTACCAAATGCCATGTTCCAAA
* * * *
25997443 CATGGTTTTACATGGTATCCTTTTCTTACCAAATTCCATGTTCCAAA
1 CATGGTCTTACATGATATCCTTATCTTACCAAATGCCATGTTCCAAA
* *
25997490 CATGGTCTTACATGATATACTTGTCTTA
1 CATGGTCTTACATGATATCCTTATCTTA
25997518 GTGCCAATGC
Statistics
Matches: 67, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
47 67 1.00
ACGTcount: A:0.27, C:0.23, G:0.11, T:0.39
Consensus pattern (47 bp):
CATGGTCTTACATGATATCCTTATCTTACCAAATGCCATGTTCCAAA
Found at i:25998527 original size:338 final size:338
Alignment explanation
Indices: 25997911--25998918 Score: 1998
Period size: 338 Copynumber: 3.0 Consensus size: 338
25997901 AACTTAACTT
25997911 ATTCTCATCAAACTATGCTAGTCAATACTTTATTGTTATCATACAAAGCCATTATACAAAATATG
1 ATTCTCATCAAACTATGCTAGTCAATACTTTATTGTTATCATACAAAGCCATTATACAAAATATG
*
25997976 GTATTACATATAAATTATAGAAGTTCTCTTTCCAATATCGAATTGTTATCGAACATTAATCATTA
66 GTATTACATATAAATTATAGAAGTTCTCTTTCCAATAGCGAATTGTTATCGAACATTAATCATTA
25998041 TATAAACTTCTCTAGTTATAGATATAGCATTATAAAAATGCCAATTTAACATGAACATTTATCTC
131 TATAAACTTCTCTAGTTATAGATATAGCATTATAAAAATGCCAATTTAACATGAACATTTATCTC
25998106 AATATAAACTTTCCTTTCATCTTATCTCATCTTTCATATTTCCCGAAAAATTCCTATTCACAATT
196 AATATAAACTTTCCTTTCATCTTATCTCATCTTTCATATTTCCCGAAAAATTCCTATTCACAATT
25998171 TATTCATTATCACAATAACATCATGAACCATTATTCTTACATTTTTGAGCCTCAACTCATGATAA
261 TATTCATTATCACAATAACATCATGAACCATTATTCTTACATTTTTGAGCCTCAACTCATGATAA
25998236 ACATACTTCTTAC
326 ACATACTTCTTAC
25998249 ATTCTCATCAAACTATGCTAGTCAATACTTTATTGTTATCATACAAAGCCATTATACAAAATATG
1 ATTCTCATCAAACTATGCTAGTCAATACTTTATTGTTATCATACAAAGCCATTATACAAAATATG
25998314 GTATTACATATAAATTATAGAAGTTCTCTTTCCAATAGCGAATTGTTATCGAACATTAATCATTA
66 GTATTACATATAAATTATAGAAGTTCTCTTTCCAATAGCGAATTGTTATCGAACATTAATCATTA
*
25998379 TATAAACTTCTCTAGTTATAGATATAGCATTATACAAATGCCAATTTAACATGAACATTTATCTC
131 TATAAACTTCTCTAGTTATAGATATAGCATTATAAAAATGCCAATTTAACATGAACATTTATCTC
25998444 AATATAAACTTTCCTTTCATCTTATCTCATCTTTCATATTTCCCGAAAAATTCCTATTCACAATT
196 AATATAAACTTTCCTTTCATCTTATCTCATCTTTCATATTTCCCGAAAAATTCCTATTCACAATT
25998509 TATTCATTATCACAATAACATCATGAACCATTATTCTTACATTTTTGAGCCTCAACTCATGATAA
261 TATTCATTATCACAATAACATCATGAACCATTATTCTTACATTTTTGAGCCTCAACTCATGATAA
25998574 ACATACTTCTTAC
326 ACATACTTCTTAC
25998587 ATTCTCATCAAACTATGCTAGTCAATACTTTATTGTTATCATACAAAGCCATTATACAAAATATG
1 ATTCTCATCAAACTATGCTAGTCAATACTTTATTGTTATCATACAAAGCCATTATACAAAATATG
25998652 GTATTACATATAAATTATAGAAGTTCTCTTTCCAATAGCGAATTGTTATCGAACATTAATCATTA
66 GTATTACATATAAATTATAGAAGTTCTCTTTCCAATAGCGAATTGTTATCGAACATTAATCATTA
25998717 TATAAACTTCTCTAGTTATAGATATAGCATTATAAAAATGCCAATTTAACATGAACATTTATCTC
131 TATAAACTTCTCTAGTTATAGATATAGCATTATAAAAATGCCAATTTAACATGAACATTTATCTC
25998782 AATATAAACTTTCCTTTCATCTTATCTCATCTTTCATATTTCCCGAAAAATTCCTATTCACAATT
196 AATATAAACTTTCCTTTCATCTTATCTCATCTTTCATATTTCCCGAAAAATTCCTATTCACAATT
25998847 TATTCATTATCACAATAACATCATGAACCATTATTCTTACATTTTTGAGCCTCAACTCATGATAA
261 TATTCATTATCACAATAACATCATGAACCATTATTCTTACATTTTTGAGCCTCAACTCATGATAA
25998912 ACATACT
326 ACATACT
25998919 GTCTGTACTA
Statistics
Matches: 667, Mismatches: 3, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
338 667 1.00
ACGTcount: A:0.36, C:0.19, G:0.06, T:0.38
Consensus pattern (338 bp):
ATTCTCATCAAACTATGCTAGTCAATACTTTATTGTTATCATACAAAGCCATTATACAAAATATG
GTATTACATATAAATTATAGAAGTTCTCTTTCCAATAGCGAATTGTTATCGAACATTAATCATTA
TATAAACTTCTCTAGTTATAGATATAGCATTATAAAAATGCCAATTTAACATGAACATTTATCTC
AATATAAACTTTCCTTTCATCTTATCTCATCTTTCATATTTCCCGAAAAATTCCTATTCACAATT
TATTCATTATCACAATAACATCATGAACCATTATTCTTACATTTTTGAGCCTCAACTCATGATAA
ACATACTTCTTAC
Found at i:26000692 original size:55 final size:53
Alignment explanation
Indices: 26000567--26000763 Score: 252
Period size: 55 Copynumber: 3.6 Consensus size: 53
26000557 AACTTACCAT
* * *
26000567 TGCCATGCCTTGACATGGTCTTACGTGATATCCTTGCCTTAT-GAACTCACCAA
1 TGCCATGCCTTGACATGGTCTTACATGGTA-CCTTGCCTTATAGAACTCATCAA
* *
26000620 TGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGTAACTCATCAA
1 TGCCATGCCTTGACATGGTCTTACATGGTACC-TTGCCTTATAG-AACTCATCAA
* * * *
26000675 TGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTATAGAACTTATCAA
1 TGCCATGCCTTGACATGGTCTTACATG-GTACCTTGCCTTATAGAACTCATCAA
*
26000729 TGCCATGCCTTGGCATGGTCTTACATGGTATCCTT
1 TGCCATGCCTTGACATGGTCTTACATGGTA-CCTT
26000764 ATCTTACCAA
Statistics
Matches: 124, Mismatches: 15, Indels: 9
0.84 0.10 0.06
Matches are distributed among these distances:
52 2 0.02
53 36 0.29
54 39 0.31
55 45 0.36
56 2 0.02
ACGTcount: A:0.21, C:0.25, G:0.18, T:0.35
Consensus pattern (53 bp):
TGCCATGCCTTGACATGGTCTTACATGGTACCTTGCCTTATAGAACTCATCAA
Found at i:26001404 original size:53 final size:54
Alignment explanation
Indices: 26001336--26001540 Score: 243
Period size: 53 Copynumber: 3.8 Consensus size: 54
26001326 TTTCCTTTTT
* * *
26001336 GAACTTACCATTGCCATGCCTTGACATGGTCTTACGTGATATCCTTGCCTTAT-
1 GAACTCACCAATGCCATGCCTTGACATGGTCTTACATGATATCCTTGCCTTATA
* **
26001389 GAACTCACCAATGCCATGCCTTGGCATGGTCTTACATGGGA-CCTTTGCCTTATA
1 GAACTCACCAATGCCATGCCTTGACATGGTCTTACATGATATCC-TTGCCTTATA
* * * *
26001443 GTAACTCATCAATGCCATGTCTTGACATGATCTTACATGATTTCCTTGCCTTATA
1 G-AACTCACCAATGCCATGCCTTGACATGGTCTTACATGATATCCTTGCCTTATA
* * * * *
26001498 GAACTTATCAATGCTATGCCTTGGCATGGACTTACATGATATC
1 GAACTCACCAATGCCATGCCTTGACATGGTCTTACATGATATC
26001541 ATTATCTTAC
Statistics
Matches: 128, Mismatches: 20, Indels: 7
0.83 0.13 0.05
Matches are distributed among these distances:
52 2 0.02
53 44 0.34
54 36 0.28
55 44 0.34
56 2 0.02
ACGTcount: A:0.24, C:0.25, G:0.17, T:0.34
Consensus pattern (54 bp):
GAACTCACCAATGCCATGCCTTGACATGGTCTTACATGATATCCTTGCCTTATA
Found at i:26001477 original size:55 final size:53
Alignment explanation
Indices: 26001347--26001538 Score: 217
Period size: 55 Copynumber: 3.6 Consensus size: 53
26001337 AACTTACCAT
* * *
26001347 TGCCATGCCTTGACATGGTCTTACGTGATATCCTTGCCTTAT-GAACTCACCAA
1 TGCCATGCCTTGACATGATCTTACATGATA-CCTTGCCTTATAGAACTCATCAA
* * **
26001400 TGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGTAACTCATCAA
1 TGCCATGCCTTGACATGATCTTACATGATACC-TTGCCTTATAG-AACTCATCAA
* * *
26001455 TGCCATGTCTTGACATGATCTTACATGATTTCCTTGCCTTATAGAACTTATCAA
1 TGCCATGCCTTGACATGATCTTACATGA-TACCTTGCCTTATAGAACTCATCAA
* *
26001509 TGCTATGCCTTGGCATGGA-CTTACATGATA
1 TGCCATGCCTTGACAT-GATCTTACATGATA
26001539 TCATTATCTT
Statistics
Matches: 118, Mismatches: 16, Indels: 10
0.82 0.11 0.07
Matches are distributed among these distances:
52 2 0.02
53 36 0.31
54 32 0.27
55 46 0.39
56 2 0.02
ACGTcount: A:0.23, C:0.24, G:0.18, T:0.34
Consensus pattern (53 bp):
TGCCATGCCTTGACATGATCTTACATGATACCTTGCCTTATAGAACTCATCAA
Found at i:26001669 original size:780 final size:780
Alignment explanation
Indices: 26000155--26001714 Score: 2915
Period size: 780 Copynumber: 2.0 Consensus size: 780
26000145 GTAAGTTCAC
* * *
26000155 ATGTAAACTAATAAGCATTAGCAATCAATTTAGCTTACTATTATGCTGTCATAATTTACTTCAAT
1 ATGTAAAATAATAAGCATTAGCAATCAATTTAGCTTACTACTATGCTGTCATAATTTACTTAAAT
26000220 AATGTTTAGTTCTTACTTTCCCATCTTACTCATCGGTAACCTTACCAAAAGCTCAGAATACAAAA
66 AATGTTTAGTTCTTACTTTCCCATCTTACTCATCGGTAACCTTACCAAAAGCTCAGAATACAAAA
* * *
26000285 GGCATCTTCCTTAATCGCTTGCTTACATACCTACAACATCTCACTTAACACATGAGTACTCTTTC
131 GGCACCTTACTTAATAGCTTGCTTACATACCTACAACATCTCACTTAACACATGAGTACTCTTTC
26000350 ATAATATAGGCATATTGCCAATCATGTCATAAAGTGTCACAAGCATAACTGAAAACTCATCACTT
196 ATAATATAGGCATATTGCCAATCATGTCATAAAGTGTCACAAGCATAACTGAAAACTCATCACTT
26000415 ACTTAATACTTGATAATCTCAATTACCTACAATCTCAATATTAAATAAGCCTTAAATGCATACCT
261 ACTTAATACTTGATAATCTCAATTACCTACAATCTCAATATTAAATAAGCCTTAAATGCATACCT
26000480 GTACTCTTTCTTCATGTTCTCGCCATGCCGTTTCTTTGACTTACTCTTTGGATTACTTGGGAACA
326 GTACTCTTTCTTCATGTTCTCGCCATGCCGTTTCTTTGACTTACTCTTTGGATTACTTGGGAACA
26000545 TTTTCCTTTTTGAACTTACCATTGCCATGCCTTGACATGGTCTTACGTGATATCCTTGCCTTATG
391 TTTTCCTTTTTGAACTTACCATTGCCATGCCTTGACATGGTCTTACGTGATATCCTTGCCTTATG
26000610 AACTCACCAATGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGTAACTCATCAA
456 AACTCACCAATGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGTAACTCATCAA
*
26000675 TGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTATAGAACTTATCAATGCCATGCCTT
521 TGCCATGTCTTGACATGATCTTACATGATTTCCTTGCCTTATAGAACTTATCAATGCCATGCCTT
* * *
26000740 GGCATGGTCTTACATGGTATCCTTATCTTACCAAATGCCATGTTCCAAACATGGTCTTACATGGT
586 GGCATGGACTTACATGATATCATTATCTTACCAAATGCCATGTTCCAAACATGGTCTTACATGGT
26000805 ATCCTTGTCTTAGTGCCAATGCCACATCTTGATGTGGTCTTACATGGAGTCCTTAATCAATGCCG
651 ATCCTTGTCTTAGTGCCAATGCCACATCTTGATGTGGTCTTACATGGAGTCCTTAATCAATGCCG
* * *
26000870 ATGCCATGTCTTGACATGGTCTTACACGGGATCCTTGCCTTACCAATGCCATGTCTTGACATGGT
716 ATGCAATGTCTTGACATGGTCTTAAACGAGATCCTTGCCTTACCAATGCCATGTCTTGACATGGT
* *
26000935 ATGTAAAATAATAAGCATTAGCATTCAATTTAGCTTACTACTATGCTGTCATAATTTGCTTAAAT
1 ATGTAAAATAATAAGCATTAGCAATCAATTTAGCTTACTACTATGCTGTCATAATTTACTTAAAT
*
26001000 AATGTTTAGTTCTTACTTTCCCATCTTACTCATCGGTAACCTTACCAAAGGCTCAGAATACAAAA
66 AATGTTTAGTTCTTACTTTCCCATCTTACTCATCGGTAACCTTACCAAAAGCTCAGAATACAAAA
*
26001065 GGCACCTTACTTAATAGCTTGCTTACATACCTGCAACATCTCACTTAACACATGAGTACTCTTTC
131 GGCACCTTACTTAATAGCTTGCTTACATACCTACAACATCTCACTTAACACATGAGTACTCTTTC
26001130 ATAATATAGGCATATTGCCAATCATGTCATAAAGTGTCACAAGCATAACTGAAAACTCATCACTT
196 ATAATATAGGCATATTGCCAATCATGTCATAAAGTGTCACAAGCATAACTGAAAACTCATCACTT
*
26001195 ACTTAATACTTGATAATCTCAATTACTTACAATCTCAATATTAAATAAGCCTTAAATGCATACCT
261 ACTTAATACTTGATAATCTCAATTACCTACAATCTCAATATTAAATAAGCCTTAAATGCATACCT
26001260 GTACTCTTTCTTCATGTTCTCGCCATGCCGTTTCTTTGACTTACTCTTTGGATTACTTGGGAACA
326 GTACTCTTTCTTCATGTTCTCGCCATGCCGTTTCTTTGACTTACTCTTTGGATTACTTGGGAACA
26001325 TTTTCCTTTTTGAACTTACCATTGCCATGCCTTGACATGGTCTTACGTGATATCCTTGCCTTATG
391 TTTTCCTTTTTGAACTTACCATTGCCATGCCTTGACATGGTCTTACGTGATATCCTTGCCTTATG
26001390 AACTCACCAATGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGTAACTCATCAA
456 AACTCACCAATGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGTAACTCATCAA
*
26001455 TGCCATGTCTTGACATGATCTTACATGATTTCCTTGCCTTATAGAACTTATCAATGCTATGCCTT
521 TGCCATGTCTTGACATGATCTTACATGATTTCCTTGCCTTATAGAACTTATCAATGCCATGCCTT
26001520 GGCATGGACTTACATGATATCATTATCTTACCAAATGCCATGTTCCAAACATGGTCTTACATGGT
586 GGCATGGACTTACATGATATCATTATCTTACCAAATGCCATGTTCCAAACATGGTCTTACATGGT
*
26001585 ATCCTTGTCTTAGTGCCAATGCCACATCTTGATGTGGTCTTACATGGAGTCCTTAATCAATGGCG
651 ATCCTTGTCTTAGTGCCAATGCCACATCTTGATGTGGTCTTACATGGAGTCCTTAATCAATGCCG
*
26001650 ATGTAATGTCCTT-ACATGGTCTTAAACGAGATCCTTGCCTTACCAATGCCATGTCTTGACATGG
716 ATGCAATGT-CTTGACATGGTCTTAAACGAGATCCTTGCCTTACCAATGCCATGTCTTGACATGG
26001714 T
780 T
26001715 CTTACATGGT
Statistics
Matches: 758, Mismatches: 21, Indels: 2
0.97 0.03 0.00
Matches are distributed among these distances:
780 755 1.00
781 3 0.00
ACGTcount: A:0.27, C:0.23, G:0.14, T:0.35
Consensus pattern (780 bp):
ATGTAAAATAATAAGCATTAGCAATCAATTTAGCTTACTACTATGCTGTCATAATTTACTTAAAT
AATGTTTAGTTCTTACTTTCCCATCTTACTCATCGGTAACCTTACCAAAAGCTCAGAATACAAAA
GGCACCTTACTTAATAGCTTGCTTACATACCTACAACATCTCACTTAACACATGAGTACTCTTTC
ATAATATAGGCATATTGCCAATCATGTCATAAAGTGTCACAAGCATAACTGAAAACTCATCACTT
ACTTAATACTTGATAATCTCAATTACCTACAATCTCAATATTAAATAAGCCTTAAATGCATACCT
GTACTCTTTCTTCATGTTCTCGCCATGCCGTTTCTTTGACTTACTCTTTGGATTACTTGGGAACA
TTTTCCTTTTTGAACTTACCATTGCCATGCCTTGACATGGTCTTACGTGATATCCTTGCCTTATG
AACTCACCAATGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGTAACTCATCAA
TGCCATGTCTTGACATGATCTTACATGATTTCCTTGCCTTATAGAACTTATCAATGCCATGCCTT
GGCATGGACTTACATGATATCATTATCTTACCAAATGCCATGTTCCAAACATGGTCTTACATGGT
ATCCTTGTCTTAGTGCCAATGCCACATCTTGATGTGGTCTTACATGGAGTCCTTAATCAATGCCG
ATGCAATGTCTTGACATGGTCTTAAACGAGATCCTTGCCTTACCAATGCCATGTCTTGACATGGT
Found at i:26007750 original size:49 final size:50
Alignment explanation
Indices: 26007678--26007812 Score: 159
Period size: 50 Copynumber: 2.7 Consensus size: 50
26007668 AGGGCATGAT
* * * ** *
26007678 GCCGATGCCATGTTCCAGACATGGTCTTACACTGACTATTGA-A-ATTGAG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGACT-CTCACATATCCAC
* *
26007727 GCCGACGCCACGTCCCAGACATGGTCTTACACT-AGCTCTCACATATCCAC
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGA-CTCTCACATATCCAC
26007777 GCCGATGCCATGTCCCAGACATGGTCTTACACTGAC
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGAC
26007813 AATCTCATAG
Statistics
Matches: 72, Mismatches: 10, Indels: 7
0.81 0.11 0.08
Matches are distributed among these distances:
48 3 0.04
49 33 0.46
50 35 0.49
51 1 0.01
ACGTcount: A:0.24, C:0.32, G:0.20, T:0.24
Consensus pattern (50 bp):
GCCGATGCCATGTCCCAGACATGGTCTTACACTGACTCTCACATATCCAC
Found at i:26007801 original size:50 final size:48
Alignment explanation
Indices: 26007678--26007981 Score: 177
Period size: 46 Copynumber: 6.4 Consensus size: 48
26007668 AGGGCATGAT
* * ** * **
26007678 GCCGATGCCATGTTCCAGACATGGTCTTACACTGACTATTGAAATTGAG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTG-CTCTACATATCCAG
* * *
26007727 GCCGACGCCACGTCCCAGACATGGTCTTACACTAGCTCTCACATATCCAC
1 GCCGATGCCATGTCCCAGACATGGTCTTACACT-GCTCT-ACATATCCAG
*
26007777 GCCGATGCCATGTCCCAGACATGGTCTTACACTG----ACA-ATCTCATA
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGCTCTACATATC-CA-G
* * * **
26007822 GCCAATG-CATGTCCCAAACAT-GTCTTACACTGGCT-TACATCTCGTG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACT-GCTCTACATATCCAG
* * * * * *
26007868 GCCGATG-CATGTCCCAAACAT-ATCTTACACTAGCTCT-CGTCTCAAT
1 GCCGATGCCATGTCCCAGACATGGTCTTACACT-GCTCTACATATCCAG
* * * **
26007914 ACTGATGCCATGTCCTAGACATGGTCTTACACTGGCTCT-CATAAT-GTG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACT-GCTCTACAT-ATCCAG
*
26007962 GTCGATG-CATGTCCCAGACA
1 GCCGATGCCATGTCCCAGACA
26007982 CGTCTTAGAC
Statistics
Matches: 201, Mismatches: 41, Indels: 28
0.74 0.15 0.10
Matches are distributed among these distances:
43 13 0.06
44 19 0.09
45 6 0.03
46 42 0.21
47 28 0.14
48 22 0.11
49 35 0.17
50 36 0.18
ACGTcount: A:0.25, C:0.30, G:0.18, T:0.26
Consensus pattern (48 bp):
GCCGATGCCATGTCCCAGACATGGTCTTACACTGCTCTACATATCCAG
Found at i:26013465 original size:50 final size:51
Alignment explanation
Indices: 26013306--26013523 Score: 180
Period size: 50 Copynumber: 4.5 Consensus size: 51
26013296 AGTTATTTGT
* * **
26013306 GAGCCAGTGTAAGACAATGTCTGGGACATGGCATC-G-AC-ATTTA-GATGA
1 GAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCACTAGATATG-TGA
*
26013354 GAGCTAGTGTAAGA-CATGTCTGAGACAT-GCATCGGCTACTAG--ATGT--
1 GAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGC-ACTAGATATGTGA
* *
26013400 G-TC-AGTGTAAGACCATGTCTGGGACATGGCTTCGGCAC-AGATATGTGA
1 GAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCACTAGATATGTGA
* * * * *
26013448 GAGCTAGTGTAGGACCATGTCTGGGACATAGCGTCGGC-CTCGAT-TTTGA
1 GAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCACTAGATATGTGA
*
26013497 TAG-TCAGTGTAAGACCATGTCTGGGAC
1 GAGCT-AGTGTAAGACCATGTCTGGGAC
26013524 CTAGCATCAA
Statistics
Matches: 140, Mismatches: 15, Indels: 29
0.76 0.08 0.16
Matches are distributed among these distances:
44 11 0.08
45 16 0.11
46 17 0.12
47 13 0.09
48 17 0.12
49 32 0.23
50 34 0.24
ACGTcount: A:0.26, C:0.18, G:0.30, T:0.25
Consensus pattern (51 bp):
GAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCACTAGATATGTGA
Found at i:26013514 original size:99 final size:91
Alignment explanation
Indices: 26013310--26013523 Score: 243
Period size: 92 Copynumber: 2.3 Consensus size: 91
26013300 ATTTGTGAGC
* **
26013310 CAGTGTAAGACAATGTCTGGGACATGGCATCGACATTTAGATGAGAGCTAGTGTAAGACATGTCT
1 CAGTGTAAGACCATGTCTGGGACATGGCATCGACAGATAGATGAGAGCTAGTGTAAGACATGTCT
26013375 GAGACATGCATCGGCTACTAGATGTGT
66 GAGACATGCATCGGC-ACTAGATGTGT
* *
26013402 CAGTGTAAGACCATGTCTGGGACATGGCTTCGGCACAGATATG-TGAGAGCTAGTGTAGGACCAT
1 CAGTGTAAGACCATGTCTGGGACATGGCATC-G-ACAGATA-GATGAGAGCTAGTGTAAGA-CAT
* * *
26013466 GTCTGGGACATAGCGTCGGC-CTCGATTTTGATAGT
62 GTCTGAGACAT-GCATCGGCACTAGA---TG-T-GT
26013501 CAGTGTAAGACCATGTCTGGGAC
1 CAGTGTAAGACCATGTCTGGGAC
26013524 CTAGCATCAA
Statistics
Matches: 104, Mismatches: 8, Indels: 13
0.83 0.06 0.10
Matches are distributed among these distances:
92 29 0.28
93 1 0.01
94 25 0.24
95 14 0.13
96 7 0.07
97 2 0.02
98 1 0.01
99 25 0.24
ACGTcount: A:0.26, C:0.18, G:0.30, T:0.26
Consensus pattern (91 bp):
CAGTGTAAGACCATGTCTGGGACATGGCATCGACAGATAGATGAGAGCTAGTGTAAGACATGTCT
GAGACATGCATCGGCACTAGATGTGT
Found at i:26013907 original size:19 final size:19
Alignment explanation
Indices: 26013885--26013924 Score: 80
Period size: 19 Copynumber: 2.1 Consensus size: 19
26013875 TTTTGTGATG
26013885 ACCTGGTGATTATAGGTCT
1 ACCTGGTGATTATAGGTCT
26013904 ACCTGGTGATTATAGGTCT
1 ACCTGGTGATTATAGGTCT
26013923 AC
1 AC
26013925 ACTGATTTTG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.23, C:0.17, G:0.25, T:0.35
Consensus pattern (19 bp):
ACCTGGTGATTATAGGTCT
Found at i:26025289 original size:20 final size:20
Alignment explanation
Indices: 26025266--26025396 Score: 154
Period size: 20 Copynumber: 6.5 Consensus size: 20
26025256 GTGGACATAC
**
26025266 TGATGGCTTTGTGCTGCTAT
1 TGATGGCTTTGTGCCACTAT
* * *
26025286 TGATGGCTTTGTGCTATTAC
1 TGATGGCTTTGTGCCACTAT
26025306 TGATGGCTTTGTGCCACTAT
1 TGATGGCTTTGTGCCACTAT
* *
26025326 TGATGTCTTTGTGCCACTAC
1 TGATGGCTTTGTGCCACTAT
* *
26025346 TGATGGCTTTGTACTACTAT
1 TGATGGCTTTGTGCCACTAT
* * *
26025366 TGATGGATTTGTACCGCTAT
1 TGATGGCTTTGTGCCACTAT
26025386 TGATGGCTTTG
1 TGATGGCTTTG
26025397 ATCCGCTACT
Statistics
Matches: 95, Mismatches: 16, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 95 1.00
ACGTcount: A:0.15, C:0.17, G:0.25, T:0.43
Consensus pattern (20 bp):
TGATGGCTTTGTGCCACTAT
Found at i:26025318 original size:40 final size:40
Alignment explanation
Indices: 26025263--26025396 Score: 178
Period size: 40 Copynumber: 3.4 Consensus size: 40
26025253 ACTGTGGACA
* * *
26025263 TACTGATGGCTTTGTGCTGCTATTGATGGCTTTGTGCTAT
1 TACTGATGGCTTTGTGCTACTATTGATGGCTTTGTGCCAC
* *
26025303 TACTGATGGCTTTGTGCCACTATTGATGTCTTTGTGCCAC
1 TACTGATGGCTTTGTGCTACTATTGATGGCTTTGTGCCAC
* * * *
26025343 TACTGATGGCTTTGTACTACTATTGATGGATTTGTACCGC
1 TACTGATGGCTTTGTGCTACTATTGATGGCTTTGTGCCAC
*
26025383 TATTGATGGCTTTG
1 TACTGATGGCTTTG
26025397 ATCCGCTACT
Statistics
Matches: 82, Mismatches: 12, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
40 82 1.00
ACGTcount: A:0.16, C:0.17, G:0.25, T:0.43
Consensus pattern (40 bp):
TACTGATGGCTTTGTGCTACTATTGATGGCTTTGTGCCAC
Found at i:26025370 original size:60 final size:60
Alignment explanation
Indices: 26025266--26025415 Score: 185
Period size: 60 Copynumber: 2.5 Consensus size: 60
26025256 GTGGACATAC
* * * * * *
26025266 TGATGGCTTTGTGCTGCTATTGATGGCTTTGTGCTATTACTGATGGCTTTGTGCCACTAT
1 TGATGGCTTTGTGCCGCTACTGATGGCTTTGTACTACTACTGATGGATTTGTACCACTAT
* * * *
26025326 TGATGTCTTTGTGCCACTACTGATGGCTTTGTACTACTATTGATGGATTTGTACCGCTAT
1 TGATGGCTTTGTGCCGCTACTGATGGCTTTGTACTACTACTGATGGATTTGTACCACTAT
*
26025386 TGATGGCTTTGAT-CCGCTACTCATGGCTTT
1 TGATGGCTTTG-TGCCGCTACTGATGGCTTT
26025416 CTGCCATATA
Statistics
Matches: 76, Mismatches: 13, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
60 75 0.99
61 1 0.01
ACGTcount: A:0.15, C:0.19, G:0.24, T:0.42
Consensus pattern (60 bp):
TGATGGCTTTGTGCCGCTACTGATGGCTTTGTACTACTACTGATGGATTTGTACCACTAT
Found at i:26025402 original size:20 final size:20
Alignment explanation
Indices: 26025266--26025420 Score: 141
Period size: 20 Copynumber: 7.8 Consensus size: 20
26025256 GTGGACATAC
*
26025266 TGATGGCTTTGTGCTGCTAT
1 TGATGGCTTTGTGCCGCTAT
*** *
26025286 TGATGGCTTTGTGCTATTAC
1 TGATGGCTTTGTGCCGCTAT
*
26025306 TGATGGCTTTGTGCCACTAT
1 TGATGGCTTTGTGCCGCTAT
* * *
26025326 TGATGTCTTTGTGCCACTAC
1 TGATGGCTTTGTGCCGCTAT
* **
26025346 TGATGGCTTTGTACTACTAT
1 TGATGGCTTTGTGCCGCTAT
* *
26025366 TGATGGATTTGTACCGCTAT
1 TGATGGCTTTGTGCCGCTAT
*
26025386 TGATGGCTTTGAT-CCGCTAC
1 TGATGGCTTTG-TGCCGCTAT
* *
26025406 TCATGGCTTTCTGCC
1 TGATGGCTTTGTGCC
26025421 ATATACTGAT
Statistics
Matches: 114, Mismatches: 19, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
19 1 0.01
20 112 0.98
21 1 0.01
ACGTcount: A:0.15, C:0.20, G:0.24, T:0.41
Consensus pattern (20 bp):
TGATGGCTTTGTGCCGCTAT
Found at i:26029256 original size:20 final size:20
Alignment explanation
Indices: 26029211--26029307 Score: 72
Period size: 20 Copynumber: 5.0 Consensus size: 20
26029201 GACTGTGGAC
*
26029211 CTACTGATGG--TTGTGCCG
1 CTACTGATGGCTTTCTGCCG
* *
26029229 CTATTGATGGCTTTCTGCTG
1 CTACTGATGGCTTTCTGCCG
* *
26029249 CTACTGATGGCTTTATGCCA
1 CTACTGATGGCTTTCTGCCG
* ** * *
26029269 CTATTGATGATTTTGTGCCT
1 CTACTGATGGCTTTCTGCCG
* *
26029289 CTACTCATAGCTTTCTGCC
1 CTACTGATGGCTTTCTGCC
26029308 ATATACTGAT
Statistics
Matches: 59, Mismatches: 18, Indels: 2
0.75 0.23 0.03
Matches are distributed among these distances:
18 9 0.15
20 50 0.85
ACGTcount: A:0.14, C:0.24, G:0.22, T:0.40
Consensus pattern (20 bp):
CTACTGATGGCTTTCTGCCG
Found at i:26029328 original size:27 final size:27
Alignment explanation
Indices: 26029296--26029360 Score: 80
Period size: 26 Copynumber: 2.4 Consensus size: 27
26029286 CCTCTACTCA
26029296 TAGCTTT-CTGCCATATACTGATACTGG
1 TAGCTTTGCTGCCAT-TACTGATACTGG
* *
26029323 TAGCTTTGCTG-CGTTACTGTTACTGG
1 TAGCTTTGCTGCCATTACTGATACTGG
*
26029349 CAGCTTTGCTGC
1 TAGCTTTGCTGC
26029361 GATACTATTA
Statistics
Matches: 33, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
26 21 0.64
27 9 0.27
28 3 0.09
ACGTcount: A:0.15, C:0.23, G:0.23, T:0.38
Consensus pattern (27 bp):
TAGCTTTGCTGCCATTACTGATACTGG
Found at i:26029347 original size:26 final size:26
Alignment explanation
Indices: 26029310--26029391 Score: 101
Period size: 26 Copynumber: 3.2 Consensus size: 26
26029300 TTTCTGCCAT
* *
26029310 ATACTGATACTGGTAGCTTTGCTGCG
1 ATACTGTTACTGGCAGCTTTGCTGCG
*
26029336 TTACTGTTACTGGCAGCTTTGCTGCG
1 ATACTGTTACTGGCAGCTTTGCTGCG
* * * *
26029362 ATACTATTATTGGCAGCTATGCTTCG
1 ATACTGTTACTGGCAGCTTTGCTGCG
26029388 ATAC
1 ATAC
26029392 CGGTGTGTTG
Statistics
Matches: 48, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
26 48 1.00
ACGTcount: A:0.20, C:0.21, G:0.23, T:0.37
Consensus pattern (26 bp):
ATACTGTTACTGGCAGCTTTGCTGCG
Found at i:26032798 original size:21 final size:20
Alignment explanation
Indices: 26032759--26032798 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
26032749 TGGTCCGTAA
*
26032759 GCCCATTGGGCCCAGTTTTC
1 GCCCATTGGGCCCACTTTTC
*
26032779 GCCCATTGAGGCCCTCTTTT
1 GCCCATTG-GGCCCACTTTT
26032799 TCCGAAGTAC
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 8 0.47
21 9 0.53
ACGTcount: A:0.10, C:0.35, G:0.23, T:0.33
Consensus pattern (20 bp):
GCCCATTGGGCCCACTTTTC
Found at i:26034208 original size:34 final size:33
Alignment explanation
Indices: 26034148--26034219 Score: 83
Period size: 34 Copynumber: 2.2 Consensus size: 33
26034138 TGTTACCGGC
* * *
26034148 ACTGAAATGGGCTAAGGCTCACACTGATACTGA
1 ACTGTAATGGGCTAAGCCTCACACTGAAACTGA
*
26034181 TACTGTAATGGGCTAAGACCTTA-ACTGAAACTGA
1 -ACTGTAATGGGCTAAG-CCTCACACTGAAACTGA
26034215 ACTGT
1 ACTGT
26034220 TACTGATACG
Statistics
Matches: 33, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
33 5 0.15
34 25 0.76
35 3 0.09
ACGTcount: A:0.33, C:0.19, G:0.22, T:0.25
Consensus pattern (33 bp):
ACTGTAATGGGCTAAGCCTCACACTGAAACTGA
Found at i:26036280 original size:20 final size:20
Alignment explanation
Indices: 26036234--26036273 Score: 71
Period size: 20 Copynumber: 2.0 Consensus size: 20
26036224 AAATGGAATA
*
26036234 AAAACATGAATCATTTAGCC
1 AAAACATGAATCATTCAGCC
26036254 AAAACATGAATCATTCAGCC
1 AAAACATGAATCATTCAGCC
26036274 CTAACATTGA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.45, C:0.23, G:0.10, T:0.23
Consensus pattern (20 bp):
AAAACATGAATCATTCAGCC
Found at i:26037431 original size:3 final size:3
Alignment explanation
Indices: 26037423--26037468 Score: 83
Period size: 3 Copynumber: 15.3 Consensus size: 3
26037413 CTTTGTTTCT
*
26037423 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTA TTC TTC TTC TTC T
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC T
26037469 CATTCACTCC
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
3 41 1.00
ACGTcount: A:0.02, C:0.30, G:0.00, T:0.67
Consensus pattern (3 bp):
TTC
Found at i:26039183 original size:16 final size:14
Alignment explanation
Indices: 26039158--26039196 Score: 53
Period size: 14 Copynumber: 2.7 Consensus size: 14
26039148 CTATAAAACC
26039158 TTAT-TTATAAATGT
1 TTATATTATAAAT-T
26039172 TATATATTATAAATT
1 T-TATATTATAAATT
26039187 TTATATTATA
1 TTATATTATA
26039197 CTTAATTTAT
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
14 10 0.43
15 5 0.22
16 8 0.35
ACGTcount: A:0.41, C:0.00, G:0.03, T:0.56
Consensus pattern (14 bp):
TTATATTATAAATT
Found at i:26040138 original size:22 final size:22
Alignment explanation
Indices: 26040095--26040138 Score: 52
Period size: 22 Copynumber: 2.0 Consensus size: 22
26040085 ATAATTTCAT
**
26040095 TCAATTAATCTATGTTGCCCAA
1 TCAATTAATCTATACTGCCCAA
* *
26040117 TCAATTACTCTATACTGTCCAA
1 TCAATTAATCTATACTGCCCAA
26040139 ACACATCGTT
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.32, C:0.25, G:0.07, T:0.36
Consensus pattern (22 bp):
TCAATTAATCTATACTGCCCAA
Found at i:26044793 original size:33 final size:33
Alignment explanation
Indices: 26044750--26044853 Score: 120
Period size: 33 Copynumber: 3.1 Consensus size: 33
26044740 AAAATACATG
* *
26044750 CAGTAACAGTCTGGGCCTGAGCCTTAT-CTAGTAT
1 CAGT-ACAGTCTGGGCCTGAGCCCTATAC-AGTAA
*
26044784 CAGTACAGTCTGGGCCTTAGCCCTATACAGTAA
1 CAGTACAGTCTGGGCCTGAGCCCTATACAGTAA
* * * *
26044817 CAGAACAGTTTGGGCTTTAGCCCTATACAGTAA
1 CAGTACAGTCTGGGCCTGAGCCCTATACAGTAA
26044850 CAGT
1 CAGT
26044854 GTGGACCTAA
Statistics
Matches: 62, Mismatches: 7, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
33 57 0.92
34 5 0.08
ACGTcount: A:0.27, C:0.24, G:0.22, T:0.27
Consensus pattern (33 bp):
CAGTACAGTCTGGGCCTGAGCCCTATACAGTAA
Found at i:26044887 original size:33 final size:33
Alignment explanation
Indices: 26044750--26044888 Score: 119
Period size: 33 Copynumber: 4.3 Consensus size: 33
26044740 AAAATACATG
* * *
26044750 CAGTAACAGTCTGGGCCTGAGCCTTAT-CTAGTAT
1 CAGT-ACAGTGTGGGCCTTAGCCCTATAC-AGTAT
* *
26044784 CAGTACAGTCTGGGCCTTAGCCCTATACAGTAA
1 CAGTACAGTGTGGGCCTTAGCCCTATACAGTAT
* * *
26044817 CAGAACAGTTTGGGCTTTAGCCCTATACAG--T
1 CAGTACAGTGTGGGCCTTAGCCCTATACAGTAT
* * *
26044848 -A--ACAGTGTGGACCTAAGCCCAATACAGTAT
1 CAGTACAGTGTGGGCCTTAGCCCTATACAGTAT
26044878 CAGTACAGTGT
1 CAGTACAGTGT
26044889 AATGCAATTA
Statistics
Matches: 87, Mismatches: 12, Indels: 13
0.78 0.11 0.12
Matches are distributed among these distances:
28 21 0.24
30 2 0.02
31 1 0.01
33 58 0.67
34 5 0.06
ACGTcount: A:0.28, C:0.24, G:0.22, T:0.26
Consensus pattern (33 bp):
CAGTACAGTGTGGGCCTTAGCCCTATACAGTAT
Found at i:26045084 original size:27 final size:27
Alignment explanation
Indices: 26045007--26045116 Score: 82
Period size: 27 Copynumber: 4.1 Consensus size: 27
26044997 CAAAGCTGCC
* * * *
26045007 AGTAATAAT-AATGTAGCATAGCTACC
1 AGTAACAATGAATGTGGCATAGCCACT
* * *
26045033 AGAAACAGTAAATGTGGCA-AGCCACT
1 AGTAACAATGAATGTGGCATAGCCACT
* *
26045059 AGTATCAAT-AATCGTGGCATAGCCACC
1 AGTAACAATGAAT-GTGGCATAGCCACT
* * *
26045086 AGTAACAGTGAATGTGACATAGTCACT
1 AGTAACAATGAATGTGGCATAGCCACT
26045113 AGTA
1 AGTA
26045117 CAGTACTTCC
Statistics
Matches: 65, Mismatches: 15, Indels: 7
0.75 0.17 0.08
Matches are distributed among these distances:
25 3 0.05
26 23 0.35
27 36 0.55
28 3 0.05
ACGTcount: A:0.39, C:0.18, G:0.20, T:0.23
Consensus pattern (27 bp):
AGTAACAATGAATGTGGCATAGCCACT
Found at i:26045093 original size:53 final size:53
Alignment explanation
Indices: 26045013--26045116 Score: 138
Period size: 53 Copynumber: 2.0 Consensus size: 53
26045003 TGCCAGTAAT
* *
26045013 AATAATGTAGCATAGCTACCAGAAACAGTAAATGTGGCA-AGCCACTAGTATC
1 AATAATGTAGCATAGCCACCAGAAACAGTAAATGTGACATAGCCACTAGTATC
* * * *
26045065 AATAATCGTGGCATAGCCACCAGTAACAGTGAATGTGACATAGTCACTAGTA
1 AATAAT-GTAGCATAGCCACCAGAAACAGTAAATGTGACATAGCCACTAGTA
26045117 CAGTACTTCC
Statistics
Matches: 44, Mismatches: 6, Indels: 2
0.85 0.12 0.04
Matches are distributed among these distances:
52 6 0.14
53 28 0.64
54 10 0.23
ACGTcount: A:0.38, C:0.19, G:0.20, T:0.22
Consensus pattern (53 bp):
AATAATGTAGCATAGCCACCAGAAACAGTAAATGTGACATAGCCACTAGTATC
Found at i:26045287 original size:27 final size:27
Alignment explanation
Indices: 26045258--26045374 Score: 126
Period size: 27 Copynumber: 4.3 Consensus size: 27
26045248 GGCATAATAG
* *
26045258 TCATTTTACCATACAGGGGTATTATGG
1 TCATTTTACCATACAGGGGTATTACGA
* * *
26045285 TCATTTTACTATACAGTGATATTACGA
1 TCATTTTACCATACAGGGGTATTACGA
* * * *
26045312 TTATTTTACCCTACAAGGGCATTACGA
1 TCATTTTACCATACAGGGGTATTACGA
* *
26045339 TCATTTTACCCTATAGGGGTATTACGA
1 TCATTTTACCATACAGGGGTATTACGA
*
26045366 TTATTTTAC
1 TCATTTTAC
26045375 AAATAGTGGT
Statistics
Matches: 73, Mismatches: 17, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
27 73 1.00
ACGTcount: A:0.28, C:0.17, G:0.15, T:0.39
Consensus pattern (27 bp):
TCATTTTACCATACAGGGGTATTACGA
Found at i:26045346 original size:54 final size:54
Alignment explanation
Indices: 26045260--26045374 Score: 140
Period size: 54 Copynumber: 2.1 Consensus size: 54
26045250 CATAATAGTC
* * * * * *
26045260 ATTTTACCATACAGGGGTATTATGGTCATTTTACTATACAGTGATATTACGATT
1 ATTTTACCATACAAGGGCATTACGATCATTTTACCATACAGGGATATTACGATT
* * * *
26045314 ATTTTACCCTACAAGGGCATTACGATCATTTTACCCTATAGGGGTATTACGATT
1 ATTTTACCATACAAGGGCATTACGATCATTTTACCATACAGGGATATTACGATT
26045368 ATTTTAC
1 ATTTTAC
26045375 AAATAGTGGT
Statistics
Matches: 51, Mismatches: 10, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
54 51 1.00
ACGTcount: A:0.29, C:0.17, G:0.16, T:0.39
Consensus pattern (54 bp):
ATTTTACCATACAAGGGCATTACGATCATTTTACCATACAGGGATATTACGATT
Found at i:26049348 original size:27 final size:26
Alignment explanation
Indices: 26049298--26049375 Score: 79
Period size: 27 Copynumber: 3.0 Consensus size: 26
26049288 GAAACAATAG
* *
26049298 ATGTGGCA-AGTCACCAATATCAGTA
1 ATGTGGCATAGTCACCAGTAACAGTA
*
26049323 ATTGTGGCATAGCCACCAGTAACAGTGA
1 A-TGTGGCATAGTCACCAGTAACAGT-A
* *
26049351 ATGTGACATAGTCACTAGT-ACAGTA
1 ATGTGGCATAGTCACCAGTAACAGTA
26049376 CTTCCTCCAT
Statistics
Matches: 44, Mismatches: 6, Indels: 6
0.79 0.11 0.11
Matches are distributed among these distances:
25 2 0.05
26 12 0.27
27 28 0.64
28 2 0.05
ACGTcount: A:0.35, C:0.19, G:0.22, T:0.24
Consensus pattern (26 bp):
ATGTGGCATAGTCACCAGTAACAGTA
Found at i:26049541 original size:27 final size:26
Alignment explanation
Indices: 26049511--26049654 Score: 171
Period size: 27 Copynumber: 5.4 Consensus size: 26
26049501 GGGCATAATC
*
26049511 GTCATTTTACCATATAGTGGTATTACG
1 GTCATTTTACCCTATAG-GGTATTACG
*
26049538 GTCATTTTACCATATAAGGGTATTACG
1 GTCATTTTACCCTAT-AGGGTATTACG
* *
26049565 ATCATTTTACCCTATAGGGGCATTACG
1 GTCATTTTACCCTATA-GGGTATTACG
* * *
26049592 GTTATTTTACCCTACAGGGGTATTACA
1 GTCATTTTACCCTATA-GGGTATTACG
* *
26049619 GTCATTTTACCCTACAGGGTATTATG
1 GTCATTTTACCCTATAGGGTATTACG
26049645 GTCATTTTAC
1 GTCATTTTAC
26049655 AAATCAGGGT
Statistics
Matches: 104, Mismatches: 11, Indels: 5
0.87 0.09 0.04
Matches are distributed among these distances:
26 19 0.18
27 83 0.80
28 2 0.02
ACGTcount: A:0.26, C:0.18, G:0.18, T:0.38
Consensus pattern (26 bp):
GTCATTTTACCCTATAGGGTATTACG
Found at i:26056259 original size:34 final size:34
Alignment explanation
Indices: 26056193--26056259 Score: 91
Period size: 33 Copynumber: 2.0 Consensus size: 34
26056183 ATAGTGCATG
**
26056193 CAGTAACAGTCTGGGCCTGAGCCCTATTCAGTAT
1 CAGTAACAGTCTGGGCCTGAGCCCTAAACAGTAT
*
26056227 CAGT-ACAGTCTGGGCCTTAGCCCCTAAACAGTA
1 CAGTAACAGTCTGGGCCTGAG-CCCTAAACAGTA
26056260 GCGGTGTGGG
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
33 15 0.52
34 14 0.48
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.24
Consensus pattern (34 bp):
CAGTAACAGTCTGGGCCTGAGCCCTAAACAGTAT
Found at i:26064376 original size:26 final size:26
Alignment explanation
Indices: 26064347--26064396 Score: 64
Period size: 26 Copynumber: 1.9 Consensus size: 26
26064337 CCAGCACACC
*
26064347 AATATCGCAGCAAAGCTGCCAGTAAA
1 AATAACGCAGCAAAGCTGCCAGTAAA
* **
26064373 AATAACGTAGCGTAGCTGCCAGTA
1 AATAACGCAGCAAAGCTGCCAGTA
26064397 GTAGTAAGTG
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
26 20 1.00
ACGTcount: A:0.38, C:0.22, G:0.22, T:0.18
Consensus pattern (26 bp):
AATAACGCAGCAAAGCTGCCAGTAAA
Found at i:26066254 original size:56 final size:56
Alignment explanation
Indices: 26066188--26066299 Score: 224
Period size: 56 Copynumber: 2.0 Consensus size: 56
26066178 CAAATTCCAT
26066188 GATAATCTCCAAGATTTTCTCCCCTTATCCCTCCTTGAAATCCTCTAGAACAACCC
1 GATAATCTCCAAGATTTTCTCCCCTTATCCCTCCTTGAAATCCTCTAGAACAACCC
26066244 GATAATCTCCAAGATTTTCTCCCCTTATCCCTCCTTGAAATCCTCTAGAACAACCC
1 GATAATCTCCAAGATTTTCTCCCCTTATCCCTCCTTGAAATCCTCTAGAACAACCC
26066300 TTAAGACCAA
Statistics
Matches: 56, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
56 56 1.00
ACGTcount: A:0.27, C:0.36, G:0.07, T:0.30
Consensus pattern (56 bp):
GATAATCTCCAAGATTTTCTCCCCTTATCCCTCCTTGAAATCCTCTAGAACAACCC
Found at i:26070709 original size:20 final size:20
Alignment explanation
Indices: 26070680--26070733 Score: 90
Period size: 20 Copynumber: 2.7 Consensus size: 20
26070670 GTTATACCTC
*
26070680 ACACGCCCGTGTGCTTGGGG
1 ACACACCCGTGTGCTTGGGG
*
26070700 ACACATCCGTGTGCTTGGGG
1 ACACACCCGTGTGCTTGGGG
26070720 ACACACCCGTGTGC
1 ACACACCCGTGTGC
26070734 CCCACCTGTT
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 31 1.00
ACGTcount: A:0.15, C:0.31, G:0.33, T:0.20
Consensus pattern (20 bp):
ACACACCCGTGTGCTTGGGG
Found at i:26084847 original size:48 final size:48
Alignment explanation
Indices: 26084715--26085031 Score: 253
Period size: 48 Copynumber: 6.6 Consensus size: 48
26084705 GTAAATAGCC
* * * ** * * *
26084715 GATGCCATGTCCTAGACATGGTCTTACACAGGCTCACATGTCCAGGCC
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAACAATGCT
* ** * **
26084763 GATGCCATGTCCTAGACATGGTCTTACACTAACTCTCGTCTCAATGCT
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAACAATGCT
* * **
26084811 GATTCCATGTCCCAGATATGGTCTTACACTGGCTCTCATAAC-ATTTT
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAACAATGCT
* * * *
26084858 CGATGCCATGTTCCAAACATGGTCTTACACTGGCTTTCATAACATTG-T
1 -GATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAACAATGCT
* * * * * *
26084906 GATGCCATGTTCCAAACATGGTCTTACACTGGCTCTTATAATATTGCC
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAACAATGCT
* * * * * ** *
26084954 GATGCCATGTTCCAAACATGGTCTTACAATGGCACACATAA-TGTGGCC
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAACAAT-GCT
* *
26085002 GATGCCATGTCTCGGACATGGTCTTACACT
1 GATGCCATGTCCCAGACATGGTCTTACACT
26085032 AGAACACATA
Statistics
Matches: 224, Mismatches: 41, Indels: 8
0.82 0.15 0.03
Matches are distributed among these distances:
47 47 0.21
48 176 0.79
49 1 0.00
ACGTcount: A:0.24, C:0.27, G:0.19, T:0.30
Consensus pattern (48 bp):
GATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAACAATGCT
Found at i:26084957 original size:95 final size:96
Alignment explanation
Indices: 26084715--26085031 Score: 291
Period size: 96 Copynumber: 3.3 Consensus size: 96
26084705 GTAAATAGCC
* * * * ** * *
26084715 GATGCCATGTCCTAGACATGGTCTTACACAGGCTCACATGTCCA-GGCCGATGCCATG-TCCTAG
1 GATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCAT-AACATTGCCGATGCCATGTTCC-AA
** * **
26084778 ACATGGTCTTACACTAACTCTCGTCTCAATGCT
64 ACATGGTCTTACACTGGCTCTCATAACAATGCT
* * * **
26084811 GATTCCATGTCCCAGATATGGTCTTACACTGGCTCTCATAACATTTTCGATGCCATGTTCCAAAC
1 GATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCATAACATTGCCGATGCCATGTTCCAAAC
* *
26084876 ATGGTCTTACACTGGCTTTCATAACATTG-T
66 ATGGTCTTACACTGGCTCTCATAACAATGCT
* * *
26084906 GATGCCATGTTCCAAACATGGTCTTACACTGGCTCTTATAATATTGCCGATGCCATGTTCCAAAC
1 GATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCATAACATTGCCGATGCCATGTTCCAAAC
* * * ** *
26084971 ATGGTCTTACAATGGCACACATAA-TGTGGCC
66 ATGGTCTTACACTGGCTCTCATAACAAT-GCT
* **
26085002 GATGCCATGTCTCGGACATGGTCTTACACT
1 GATGCCATGTCCCAAACATGGTCTTACACT
26085032 AGAACACATA
Statistics
Matches: 180, Mismatches: 37, Indels: 8
0.80 0.16 0.04
Matches are distributed among these distances:
94 1 0.01
95 81 0.45
96 95 0.53
97 3 0.02
ACGTcount: A:0.24, C:0.27, G:0.19, T:0.30
Consensus pattern (96 bp):
GATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCATAACATTGCCGATGCCATGTTCCAAAC
ATGGTCTTACACTGGCTCTCATAACAATGCT
Found at i:26095976 original size:27 final size:27
Alignment explanation
Indices: 26095946--26096064 Score: 132
Period size: 27 Copynumber: 4.4 Consensus size: 27
26095936 GGGGCAAAAT
* * *
26095946 GGTAATTTTACCCCACAAGGGTATCTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* * *
26095973 GGTAATTCTACCCTATAGGGGTATTTT
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
26096000 GGTAATTCTATCCAAC-AGGGATATTTC
1 GGTAATTCTACCCTACAAGGG-TATTTC
* *
26096027 GGTAATTCTACCTTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
26096054 GGTAATTCTAC
1 GGTAATTCTAC
26096065 AACTTATCTA
Statistics
Matches: 75, Mismatches: 15, Indels: 4
0.80 0.16 0.04
Matches are distributed among these distances:
26 3 0.04
27 69 0.92
28 3 0.04
ACGTcount: A:0.25, C:0.19, G:0.20, T:0.35
Consensus pattern (27 bp):
GGTAATTCTACCCTACAAGGGTATTTC
Found at i:26096003 original size:54 final size:54
Alignment explanation
Indices: 26095945--26096064 Score: 161
Period size: 54 Copynumber: 2.2 Consensus size: 54
26095935 AGGGGCAAAA
* * *
26095945 TGGTAATTTTACCCCACAAGGG-TATCTCGGTAATTCTACCCTATAGGGGTATTT
1 TGGTAATTCTACCCAAC-AGGGATATCTCGGTAATTCTACCCTACAGGGGTATTT
* * *
26095999 TGGTAATTCTATCCAACAGGGATATTTCGGTAATTCTACCTTACAGGGGTATTT
1 TGGTAATTCTACCCAACAGGGATATCTCGGTAATTCTACCCTACAGGGGTATTT
*
26096053 CGGTAATTCTAC
1 TGGTAATTCTAC
26096065 AACTTATCTA
Statistics
Matches: 57, Mismatches: 8, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
53 4 0.07
54 53 0.93
ACGTcount: A:0.25, C:0.19, G:0.20, T:0.36
Consensus pattern (54 bp):
TGGTAATTCTACCCAACAGGGATATCTCGGTAATTCTACCCTACAGGGGTATTT
Found at i:26105145 original size:27 final size:27
Alignment explanation
Indices: 26105114--26105231 Score: 164
Period size: 27 Copynumber: 4.4 Consensus size: 27
26105104 AGGCAGAATA
* * *
26105114 GTAATTTTACCCCACAAGGGTATCTCG
1 GTAATTCTACCCTACAGGGGTATCTCG
* *
26105141 ATAATTCTACCCTATAGGGGTATCTCG
1 GTAATTCTACCCTACAGGGGTATCTCG
*
26105168 GTAATTCTACCCTACAGGGGTATTTCG
1 GTAATTCTACCCTACAGGGGTATCTCG
* *
26105195 GTAATTCTACCTTACAGGGGTATTTCG
1 GTAATTCTACCCTACAGGGGTATCTCG
26105222 GTAATTCTAC
1 GTAATTCTAC
26105232 AACTTATCCA
Statistics
Matches: 82, Mismatches: 9, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 82 1.00
ACGTcount: A:0.25, C:0.22, G:0.19, T:0.34
Consensus pattern (27 bp):
GTAATTCTACCCTACAGGGGTATCTCG
Found at i:26110910 original size:16 final size:17
Alignment explanation
Indices: 26110891--26110929 Score: 71
Period size: 16 Copynumber: 2.4 Consensus size: 17
26110881 ATTGTAACGC
26110891 CCCAAAAATCCCGAAA-
1 CCCAAAAATCCCGAAAT
26110907 CCCAAAAATCCCGAAAT
1 CCCAAAAATCCCGAAAT
26110924 CCCAAA
1 CCCAAA
26110930 TTTTCTTAGT
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
16 16 0.73
17 6 0.27
ACGTcount: A:0.49, C:0.38, G:0.05, T:0.08
Consensus pattern (17 bp):
CCCAAAAATCCCGAAAT
Found at i:26112406 original size:28 final size:29
Alignment explanation
Indices: 26112292--26112406 Score: 137
Period size: 29 Copynumber: 4.0 Consensus size: 29
26112282 GTGAGCATGA
* *
26112292 ATATGAATGTGA-CTGGGCCTAACGGGCC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
*
26112320 ATATAAATGTGATTTGGGCCTAATGGGCC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
* *
26112349 ATAT-ACAGGTGATTTGGGCCTAATGAGCC
1 ATATGA-ATGTGATTTGGGCCTAATGGGCC
* *
26112378 ATATGAATATGA-TTGGGCTTAATGGGCC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
26112406 A
1 A
26112407 GATACAGGTA
Statistics
Matches: 75, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
28 27 0.36
29 47 0.63
30 1 0.01
ACGTcount: A:0.28, C:0.16, G:0.29, T:0.28
Consensus pattern (29 bp):
ATATGAATGTGATTTGGGCCTAATGGGCC
Found at i:26112412 original size:57 final size:58
Alignment explanation
Indices: 26112305--26112415 Score: 161
Period size: 57 Copynumber: 1.9 Consensus size: 58
26112295 TGAATGTGAC
* * *
26112305 TGGGCCTAACGGGCCATATAAATGTGATTTGGGCCTAATGGGCCATATACAGGTGATT
1 TGGGCCTAACGAGCCATATAAATATGATTTGGGCCTAATGGGCCAGATACAGGTGATT
* * *
26112363 TGGGCCTAATGAGCCATATGAATATGA-TTGGGCTTAATGGGCCAGATACAGGT
1 TGGGCCTAACGAGCCATATAAATATGATTTGGGCCTAATGGGCCAGATACAGGT
26112416 ATGTGAAATT
Statistics
Matches: 47, Mismatches: 6, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
57 24 0.51
58 23 0.49
ACGTcount: A:0.27, C:0.16, G:0.30, T:0.27
Consensus pattern (58 bp):
TGGGCCTAACGAGCCATATAAATATGATTTGGGCCTAATGGGCCAGATACAGGTGATT
Found at i:26115690 original size:28 final size:28
Alignment explanation
Indices: 26115650--26115803 Score: 256
Period size: 28 Copynumber: 5.5 Consensus size: 28
26115640 TAAATTGTAC
*
26115650 AGCACTAAGTGTGCGAGTTTGATTACGT
1 AGCACTAAGTGTGCGAGTTTGATTATGT
26115678 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAGTTTGATTATGT
26115706 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAGTTTGATTATGT
*
26115734 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATTATGT
* *
26115762 AGCACTAAGTGTGCGAG-TTGATTGTAT
1 AGCACTAAGTGTGCGAGTTTGATTATGT
*
26115789 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
26115804 GACTTAATAT
Statistics
Matches: 122, Mismatches: 4, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
27 23 0.19
28 99 0.81
ACGTcount: A:0.25, C:0.12, G:0.29, T:0.33
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATTATGT
Found at i:26115716 original size:56 final size:56
Alignment explanation
Indices: 26115625--26115803 Score: 261
Period size: 56 Copynumber: 3.2 Consensus size: 56
26115615 GAGATTGGCG
* * * * *
26115625 CTAAGTGTGCGGGTTTAAATTGTACAGCACTAAGTGTGCGAGTTTGATTACGTAGCA
1 CTAAGTGTGCGAGTTT-GATTATATAGCACTAAGTGTGCGAGTTTGATTATGTAGCA
*
26115682 CTAAGTGTGCGAGTTTGATTATGTAGCACTAAGTGTGCGAGTTTGATTATGTAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCACTAAGTGTGCGAGTTTGATTATGTAGCA
* *
26115738 CTAAGTGTGCGAGTTTGATTATATAGCACTAAGTGTGCGAG-TTGATTGTATAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCACTAAGTGTGCGAGTTTGATTATGTAGCA
*
26115793 CTGAGTGTGCG
1 CTAAGTGTGCG
26115804 GACTTAATAT
Statistics
Matches: 112, Mismatches: 10, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
55 22 0.20
56 75 0.67
57 15 0.13
ACGTcount: A:0.25, C:0.12, G:0.29, T:0.34
Consensus pattern (56 bp):
CTAAGTGTGCGAGTTTGATTATATAGCACTAAGTGTGCGAGTTTGATTATGTAGCA
Found at i:26119095 original size:54 final size:53
Alignment explanation
Indices: 26118937--26119122 Score: 225
Period size: 53 Copynumber: 3.5 Consensus size: 53
26118927 CTCGGATATG
* * * *
26118937 GTCTTACACGGAAA-CACTTATCACATTTCTCCGATGCCATAGCCCAGCTATG
1 GTCTTATACGGAAATCACTTATCACTTTTATCCGATGCCATAGCCCAGCTATA
* * *
26118989 GTCTTATACGG--ATCACTTGTATCACTTTAATCCGAAGCCATAGCCCGGCTATA
1 GTCTTATACGGAAATCAC-T-TATCACTTTTATCCGATGCCATAGCCCAGCTATA
* *
26119042 GTCTTATACGGAAATCACTTATCACTTGTTTTCCGATGCCATAGCCCAACTATA
1 GTCTTATACGGAAATCACTTATCACTT-TTATCCGATGCCATAGCCCAGCTATA
* *
26119096 GTCTTATATGGATATCACTTATCACTT
1 GTCTTATACGGAAATCACTTATCACTT
26119123 GTTGCCATGG
Statistics
Matches: 114, Mismatches: 14, Indels: 10
0.83 0.10 0.07
Matches are distributed among these distances:
50 1 0.01
51 3 0.03
52 11 0.10
53 47 0.41
54 47 0.41
55 5 0.04
ACGTcount: A:0.27, C:0.26, G:0.15, T:0.32
Consensus pattern (53 bp):
GTCTTATACGGAAATCACTTATCACTTTTATCCGATGCCATAGCCCAGCTATA
Found at i:26119222 original size:17 final size:16
Alignment explanation
Indices: 26119202--26119235 Score: 50
Period size: 17 Copynumber: 2.1 Consensus size: 16
26119192 CTATGTTTCA
*
26119202 TTCAATTTGATCATTTT
1 TTCAATTTCAT-ATTTT
26119219 TTCAATTTCATATTTT
1 TTCAATTTCATATTTT
26119235 T
1 T
26119236 ACATTGTTCA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 6 0.38
17 10 0.62
ACGTcount: A:0.24, C:0.12, G:0.03, T:0.62
Consensus pattern (16 bp):
TTCAATTTCATATTTT
Found at i:26122293 original size:27 final size:27
Alignment explanation
Indices: 26122262--26122439 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
26122252 TAAATTGTAC
26122262 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
26122289 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
26122315 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
26122343 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
26122371 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
26122398 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
26122425 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
26122440 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:26122376 original size:82 final size:81
Alignment explanation
Indices: 26122263--26122418 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
26122253 AAATTGTACA
* *
26122263 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
26122327 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
26122344 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
26122409 TGCGAGTTGA
65 TGCGAATTGA
26122419 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:26122430 original size:82 final size:81
Alignment explanation
Indices: 26122259--26122439 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
26122249 GATTAAATTG
* *
26122259 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
26122324 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
26122340 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
26122404 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
26122422 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
26122440 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:26128015 original size:70 final size:70
Alignment explanation
Indices: 26127902--26128042 Score: 273
Period size: 70 Copynumber: 2.0 Consensus size: 70
26127892 GTACCTTTGA
*
26127902 TCGAATTCGCTTACAACAATAGTTTTCAATCAAGTATTAAGATGGCACCTTACGAGGCTATGTAC
1 TCGAATTCGCTTACAACAATAGTTTCCAATCAAGTATTAAGATGGCACCTTACGAGGCTATGTAC
26127967 GGTCG
66 GGTCG
26127972 TCGAATTCGCTTACAACAATAGTTTCCAATCAAGTATTAAGATGGCACCTTACGAGGCTATGTAC
1 TCGAATTCGCTTACAACAATAGTTTCCAATCAAGTATTAAGATGGCACCTTACGAGGCTATGTAC
26128037 GGTCG
66 GGTCG
26128042 T
1 T
26128043 AAATGCCGTA
Statistics
Matches: 70, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
70 70 1.00
ACGTcount: A:0.30, C:0.21, G:0.20, T:0.30
Consensus pattern (70 bp):
TCGAATTCGCTTACAACAATAGTTTCCAATCAAGTATTAAGATGGCACCTTACGAGGCTATGTAC
GGTCG
Found at i:26133780 original size:39 final size:39
Alignment explanation
Indices: 26133725--26133909 Score: 298
Period size: 39 Copynumber: 4.7 Consensus size: 39
26133715 TTCCAACCCA
* * *
26133725 AATGCCTTCGGAACTTAGCTCGGATATAACATCAGCACG
1 AATGCCTTCGGGACTTAGCCCGGATATAATATCAGCACG
26133764 AATGCCTTCGGGACTTAGCCCGGATATAATATCAGCACG
1 AATGCCTTCGGGACTTAGCCCGGATATAATATCAGCACG
* * *
26133803 AATGCCTTCGGGACTTAGCTCGAATATAATACCAGCACG
1 AATGCCTTCGGGACTTAGCCCGGATATAATATCAGCACG
*
26133842 AATGCCTTCGGGACTTAACCCGGATATAATATCAGCACG
1 AATGCCTTCGGGACTTAGCCCGGATATAATATCAGCACG
*
26133881 AATGCCTTCGGGACTTAGCCCAGATATAA
1 AATGCCTTCGGGACTTAGCCCGGATATAA
26133910 ATCTCACACA
Statistics
Matches: 134, Mismatches: 12, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
39 134 1.00
ACGTcount: A:0.30, C:0.25, G:0.21, T:0.23
Consensus pattern (39 bp):
AATGCCTTCGGGACTTAGCCCGGATATAATATCAGCACG
Found at i:26137695 original size:17 final size:17
Alignment explanation
Indices: 26137673--26137706 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
26137663 TCCATCATAA
26137673 AAAATTAAAAAATTTAC
1 AAAATTAAAAAATTTAC
*
26137690 AAAATTACAAAATTTAC
1 AAAATTAAAAAATTTAC
26137707 CCCAAAGCAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.62, C:0.09, G:0.00, T:0.29
Consensus pattern (17 bp):
AAAATTAAAAAATTTAC
Found at i:26139768 original size:20 final size:18
Alignment explanation
Indices: 26139738--26139780 Score: 52
Period size: 20 Copynumber: 2.3 Consensus size: 18
26139728 TTTGTAAAGT
*
26139738 TTGTAAAATAAGTTGTAAA
1 TTGTGAAATAA-TTGTAAA
26139757 TGTGTGAAATAATTG-AAA
1 T-TGTGAAATAATTGTAAA
26139775 TTGTGA
1 TTGTGA
26139781 GTTGCTATAG
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
17 5 0.23
18 4 0.18
19 4 0.18
20 9 0.41
ACGTcount: A:0.42, C:0.00, G:0.21, T:0.37
Consensus pattern (18 bp):
TTGTGAAATAATTGTAAA
Found at i:26140686 original size:49 final size:49
Alignment explanation
Indices: 26140438--26140753 Score: 181
Period size: 49 Copynumber: 6.7 Consensus size: 49
26140428 GATCTGTGCT
* * * * *
26140438 AGTGTAAGACATGTCTGGGACAT-GCATCGGCCAC-AT-TATGAGAGCC
1 AGTGTAAGACCTGTCTGGGACATGGCATCGACCTCGATAGATGAAAGCC
* * * * * * * *
26140484 AGTGTAAGACCATATCTGTGACATGGCAT-TAGCAT-TA-AGACGAGAGCT
1 AGTGTAAGACC-TGTCTGGGACATGGCATCGA-CCTCGATAGATGAAAGCC
* * * * * * * * *
26140532 AGCGTAAGACATGTCTGGGACAT-GCATTGGCCTCGAGATATAAAATCT
1 AGTGTAAGACCTGTCTGGGACATGGCATCGACCTCGATAGATGAAAGCC
* * * * * *
26140580 AGTGTAAGACCTATCTGGGACATGGCATCG-GCTTG--ACATG--TGTC
1 AGTGTAAGACCTGTCTGGGACATGGCATCGACCTCGATAGATGAAAGCC
* * * *
26140624 AGTATAAGACCTGTCTGGGGCAGGGCATCGACAC-CGATAGATGAGAGCC
1 AGTGTAAGACCTGTCTGGGACATGGCATCGAC-CTCGATAGATGAAAGCC
* * * *
26140673 AGTGTAAGACCTGTCTGGGACATGCCATAGACCTCGATATATGAAAGTC
1 AGTGTAAGACCTGTCTGGGACATGGCATCGACCTCGATAGATGAAAGCC
*
26140722 AGTGTAAGACCTGTCTTGGACATGGCATCGAC
1 AGTGTAAGACCTGTCTGGGACATGGCATCGAC
26140754 TTAGATATGT
Statistics
Matches: 199, Mismatches: 55, Indels: 29
0.70 0.19 0.10
Matches are distributed among these distances:
44 26 0.13
45 1 0.01
46 20 0.10
47 25 0.13
48 52 0.26
49 75 0.38
ACGTcount: A:0.29, C:0.20, G:0.28, T:0.23
Consensus pattern (49 bp):
AGTGTAAGACCTGTCTGGGACATGGCATCGACCTCGATAGATGAAAGCC
Found at i:26140761 original size:49 final size:47
Alignment explanation
Indices: 26140580--26140799 Score: 176
Period size: 49 Copynumber: 4.6 Consensus size: 47
26140570 TATAAAATCT
* * * * *
26140580 AGTGTAAGACCTATCTGGGACATGGCATCGGCTT-G--ACATGTGTC
1 AGTGTAAGACCTGTCTGGGACATGGCATCGACTTCGATATATGAGCC
* * * ** *
26140624 AGTATAAGACCTGTCTGGGGCAGGGCATCGACACCGATAGATGAGAGCC
1 AGTGTAAGACCTGTCTGGGACATGGCATCGACTTCGATATAT--GAGCC
* * * *
26140673 AGTGTAAGACCTGTCTGGGACATGCCATAGACCTCGATATATGAAAGTC
1 AGTGTAAGACCTGTCTGGGACATGGCATCGACTTCGATATATG--AGCC
* * *
26140722 AGTGTAAGACCTGTCTTGGACATGGCATCGACTTAGATATGTGAGCC
1 AGTGTAAGACCTGTCTGGGACATGGCATCGACTTCGATATATGAGCC
* * * *
26140769 AGTGTAAGGCCTTGTTTGGAACATGACATCG
1 AGTGTAAGACC-TGTCTGGGACATGGCATCG
26140800 GCATCATGCC
Statistics
Matches: 137, Mismatches: 31, Indels: 12
0.76 0.17 0.07
Matches are distributed among these distances:
44 27 0.20
45 1 0.01
47 17 0.12
48 15 0.11
49 77 0.56
ACGTcount: A:0.27, C:0.20, G:0.29, T:0.25
Consensus pattern (47 bp):
AGTGTAAGACCTGTCTGGGACATGGCATCGACTTCGATATATGAGCC
Found at i:26146893 original size:93 final size:93
Alignment explanation
Indices: 26146785--26146956 Score: 301
Period size: 93 Copynumber: 1.8 Consensus size: 93
26146775 CGCCCATAAG
*
26146785 CGAACTCGGACTCAACTCAACGAGCTCAGG-CGTTCGCATCCATAAGTGAACTCGGACTCAAATC
1 CGAACTCGGACTCAACTCAACGAGCTC-GGACATTCGCATCCATAAGTGAACTCGGACTCAAATC
26146849 AACGAGTTCGGATGCCTAGTTACATCTCA
65 AACGAGTTCGGATGCCTAGTTACATCTCA
* *
26146878 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAAATCA
26146943 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
26146957 TCAACCATCC
Statistics
Matches: 75, Mismatches: 3, Indels: 2
0.94 0.04 0.03
Matches are distributed among these distances:
92 2 0.03
93 73 0.97
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAAATCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:26146951 original size:46 final size:46
Alignment explanation
Indices: 26146778--26146953 Score: 200
Period size: 46 Copynumber: 3.8 Consensus size: 46
26146768 TGTAACCCGC
* *
26146778 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCAGG-CGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTC-GGACATTCGCAT
* * *
26146824 CCATAAGTGAACTCGGACTCAAATCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
26146874 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
26146917 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
26146954 TGCTCAACCA
Statistics
Matches: 109, Mismatches: 11, Indels: 20
0.78 0.08 0.14
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 4 0.04
46 60 0.55
47 28 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.30, C:0.29, G:0.20, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:26154463 original size:93 final size:93
Alignment explanation
Indices: 26154350--26154521 Score: 292
Period size: 93 Copynumber: 1.8 Consensus size: 93
26154340 CGCCCATAAG
* *
26154350 CGAACTCGGACTCAACTCAACGAGCTCAGG-CGTTCGCATCCATAAGTGAACTTGGACTCAACTC
1 CGAACTCGGACTCAACTCAACGAGCTC-GGACATTCGCATCCATAAGTGAACTCGGACTCAACTC
26154414 AACGAGTTCGGATGCCTAGTTACATCTCA
65 AACGAGTTCGGATGCCTAGTTACATCTCA
* *
26154443 CGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
26154508 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
26154522 TCAACCATCC
Statistics
Matches: 74, Mismatches: 4, Indels: 2
0.93 0.05 0.03
Matches are distributed among these distances:
92 2 0.03
93 72 0.97
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.22
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:26154516 original size:46 final size:46
Alignment explanation
Indices: 26154343--26154518 Score: 198
Period size: 46 Copynumber: 3.8 Consensus size: 46
26154333 TGTAACCCGC
* * *
26154343 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCAGG-CGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTC-GGACATTTGCAT
* * * *
26154389 CCATAAGTGAACTTGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-ATTTGCAT
*
26154439 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
*
26154482 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
26154519 TGCTCAACCA
Statistics
Matches: 108, Mismatches: 14, Indels: 16
0.78 0.10 0.12
Matches are distributed among these distances:
43 6 0.06
44 2 0.02
45 4 0.04
46 60 0.56
47 28 0.26
48 2 0.02
49 2 0.02
50 4 0.04
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.22
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
Found at i:26163865 original size:9 final size:9
Alignment explanation
Indices: 26163838--26163878 Score: 57
Period size: 9 Copynumber: 4.6 Consensus size: 9
26163828 GACACCTGAA
26163838 ATTAAACAC
1 ATTAAACAC
26163847 ATTTAAACAC
1 A-TTAAACAC
*
26163857 ATAAAACAC
1 ATTAAACAC
26163866 ATTAAACAC
1 ATTAAACAC
26163875 -TTAA
1 ATTAA
26163879 CTTAAATAAA
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
8 4 0.14
9 16 0.55
10 9 0.31
ACGTcount: A:0.56, C:0.20, G:0.00, T:0.24
Consensus pattern (9 bp):
ATTAAACAC
Found at i:26163964 original size:19 final size:19
Alignment explanation
Indices: 26163935--26164027 Score: 79
Period size: 19 Copynumber: 5.1 Consensus size: 19
26163925 TTATTCTAGC
26163935 AACTAAATTAACTAAGATG
1 AACTAAATTAACTAAGATG
*
26163954 AACCT-AATTAACTAACATG
1 AA-CTAAATTAACTAAGATG
* * * *
26163973 AA-T-AATTTATTCCAG--C
1 AACTAAATTAACT-AAGATG
26163989 AACTAAATTAACTAAGATG
1 AACTAAATTAACTAAGATG
*
26164008 AACTCAATTAACTAAGATG
1 AACTAAATTAACTAAGATG
26164027 A
1 A
26164028 GTAATTTATT
Statistics
Matches: 57, Mismatches: 11, Indels: 12
0.71 0.14 0.15
Matches are distributed among these distances:
16 2 0.04
17 10 0.18
18 7 0.12
19 36 0.63
20 2 0.04
ACGTcount: A:0.48, C:0.15, G:0.09, T:0.28
Consensus pattern (19 bp):
AACTAAATTAACTAAGATG
Found at i:26163983 original size:54 final size:54
Alignment explanation
Indices: 26163925--26164053 Score: 206
Period size: 54 Copynumber: 2.4 Consensus size: 54
26163915 CATCATTAAA
*
26163925 TTATTCTAGCAACTAAATTAACTAAGATGAAC-CTAATTAACTAACATGAATAAT
1 TTATTCCAGCAACTAAATTAACTAAGATGAACTC-AATTAACTAACATGAATAAT
* *
26163979 TTATTCCAGCAACTAAATTAACTAAGATGAACTCAATTAACTAAGATGAGTAAT
1 TTATTCCAGCAACTAAATTAACTAAGATGAACTCAATTAACTAACATGAATAAT
*
26164033 TTATTCCAGCAACTTAATTAA
1 TTATTCCAGCAACTAAATTAA
26164054 TTAAACTAAG
Statistics
Matches: 70, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
54 69 0.99
55 1 0.01
ACGTcount: A:0.44, C:0.16, G:0.09, T:0.32
Consensus pattern (54 bp):
TTATTCCAGCAACTAAATTAACTAAGATGAACTCAATTAACTAACATGAATAAT
Found at i:26174924 original size:42 final size:42
Alignment explanation
Indices: 26174823--26174970 Score: 122
Period size: 43 Copynumber: 3.5 Consensus size: 42
26174813 CAATGTCGAC
* * * * *
26174823 GTCCCAGACGTGGTCTTATATGTAATTCAATACTGATACCTCT
1 GTCCCAGACATGGTCTTACATGTAAATCAATAC-GATGCCTAT
* *
26174866 GT-CCATGACAGGGTCTTACATG-AAATCAAATACGATGCCAAT
1 GTCCCA-GACATGGTCTTACATGTAAATC-AATACGATGCCTAT
* * * *
26174908 GTCCCAGACATGGTCTTATACGTAAATCTCAAT-CGAGGCCTGT
1 GTCCCAGACATGGTCTTACATGTAAA--TCAATACGATGCCTAT
*
26174951 GTCCCAGACACGGTCTTACA
1 GTCCCAGACATGGTCTTACA
26174971 CGATATCTCA
Statistics
Matches: 84, Mismatches: 15, Indels: 12
0.76 0.14 0.11
Matches are distributed among these distances:
42 28 0.33
43 51 0.61
44 3 0.04
45 2 0.02
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (42 bp):
GTCCCAGACATGGTCTTACATGTAAATCAATACGATGCCTAT
Found at i:26179531 original size:13 final size:13
Alignment explanation
Indices: 26179513--26179538 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
26179503 GGTATTTGTT
26179513 TTAACTAAACTAA
1 TTAACTAAACTAA
26179526 TTAACTAAACTAA
1 TTAACTAAACTAA
26179539 GAATGCACAG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.54, C:0.15, G:0.00, T:0.31
Consensus pattern (13 bp):
TTAACTAAACTAA
Found at i:26184425 original size:13 final size:13
Alignment explanation
Indices: 26184407--26184431 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
26184397 TGTTGGTGCA
26184407 CACGGCCGTGTCG
1 CACGGCCGTGTCG
26184420 CACGGCCGTGTC
1 CACGGCCGTGTC
26184432 CTACTTCGTT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.08, C:0.40, G:0.36, T:0.16
Consensus pattern (13 bp):
CACGGCCGTGTCG
Found at i:26187943 original size:13 final size:13
Alignment explanation
Indices: 26187925--26187950 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
26187915 GGTATTTGTT
26187925 TTAACTAAACTAA
1 TTAACTAAACTAA
26187938 TTAACTAAACTAA
1 TTAACTAAACTAA
26187951 GAATGCACAG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.54, C:0.15, G:0.00, T:0.31
Consensus pattern (13 bp):
TTAACTAAACTAA
Found at i:26191230 original size:70 final size:70
Alignment explanation
Indices: 26191117--26191258 Score: 275
Period size: 70 Copynumber: 2.0 Consensus size: 70
26191107 ATCGATAAAA
*
26191117 ATACCTAATAGTCATAAGTACATGTTAGAGTGAGAATTTGATGTTGCAATAGAAGGGTAAAATGA
1 ATACCTAATAGTCATAAGTACATGTTAGAGTGAGAATTTGATGTTGCAATAGAAGGGAAAAATGA
26191182 TCAGC
66 TCAGC
26191187 ATACCTAATAGTCATAAGTACATGTTAGAGTGAGAATTTGATGTTGCAATAGAAGGGAAAAATGA
1 ATACCTAATAGTCATAAGTACATGTTAGAGTGAGAATTTGATGTTGCAATAGAAGGGAAAAATGA
26191252 TCAGC
66 TCAGC
26191257 AT
1 AT
26191259 GTCATAAAAC
Statistics
Matches: 71, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
70 71 1.00
ACGTcount: A:0.39, C:0.10, G:0.23, T:0.28
Consensus pattern (70 bp):
ATACCTAATAGTCATAAGTACATGTTAGAGTGAGAATTTGATGTTGCAATAGAAGGGAAAAATGA
TCAGC
Found at i:26192134 original size:50 final size:50
Alignment explanation
Indices: 26192003--26192190 Score: 195
Period size: 50 Copynumber: 3.8 Consensus size: 50
26191993 AATGATCTAT
* * * *
26192003 TGTGAGGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCTGAAAAC
1 TGTGAGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTA--T-AAGAC
* * *
26192056 TGTGA--TCACGTGTGTAGTACTAATTGCAGGCTACTACGTGTATTAGA-
1 TGTGAGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTATAAGAC
* * **
26192103 TGGTGAGGTCACGTGTGTAGTACTAAGTGCAGGCAACTACGTGTACCAGAC
1 T-GTGAGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTATAAGAC
* *
26192154 TGT-TGGTCACATGTGTAGTACTAAGTTCAGGCTACTA
1 TGTGAGGTCACATGTGTAGTACTAAGTGCAGGCTACTA
26192191 TACGTACCAG
Statistics
Matches: 116, Mismatches: 15, Indels: 12
0.81 0.10 0.08
Matches are distributed among these distances:
47 1 0.01
48 6 0.05
49 31 0.27
50 40 0.34
51 33 0.28
53 5 0.04
ACGTcount: A:0.26, C:0.18, G:0.28, T:0.29
Consensus pattern (50 bp):
TGTGAGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTATAAGAC
Found at i:26192195 original size:101 final size:99
Alignment explanation
Indices: 26192004--26192190 Score: 252
Period size: 101 Copynumber: 1.9 Consensus size: 99
26191994 ATGATCTATT
* * * *
26192004 GTGAGGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCTGAAAACTGTGATCACGTGT
1 GTGAGGTCACATGTGTAGTACTAAGTGCAGGCAACTACGCGTACC--AAAACTGTGATCACATGT
26192069 GTAGTACTAATTGCAGGCTACTACGTGTATTAGATG
64 GTAGTACTAATTGCAGGCTACTACGTGTATTAGATG
* * * *
26192105 GTGAGGTCACGTGTGTAGTACTAAGTGCAGGCAACTACGTGTACC-AGACTGTTGGTCACATGTG
1 GTGAGGTCACATGTGTAGTACTAAGTGCAGGCAACTACGCGTACCAAAACTG-TGATCACATGTG
26192169 TAGTACTAAGTT-CAGGCTACTA
65 TAGTACTAA-TTGCAGGCTACTA
26192191 TACGTACCAG
Statistics
Matches: 76, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
98 5 0.07
99 29 0.38
100 2 0.03
101 40 0.53
ACGTcount: A:0.26, C:0.18, G:0.28, T:0.29
Consensus pattern (99 bp):
GTGAGGTCACATGTGTAGTACTAAGTGCAGGCAACTACGCGTACCAAAACTGTGATCACATGTGT
AGTACTAATTGCAGGCTACTACGTGTATTAGATG
Found at i:26194119 original size:50 final size:50
Alignment explanation
Indices: 26194054--26194186 Score: 157
Period size: 50 Copynumber: 2.7 Consensus size: 50
26194044 TGAGGTCGCA
26194054 TGTGTAGTACTAAGTGCAGGTACTATGCGTACCTGAAAACT-GTGA-TCACG
1 TGTGTAGTACTAAGTGCAGGTACTATGCGTACCT-AAAA-TGGTGAGTCACG
* * * *
26194104 TGTGTAGTACTAAGTGCAGGCTACTACGTGTA--TTAGATGGTGAGGTCACG
1 TGTGTAGTACTAAGTGCAGG-TACTATGCGTACCTAAAATGGTGA-GTCACG
*
26194154 TGTGTAGTACTAAGTGCAGCTACTATGCGTACC
1 TGTGTAGTACTAAGTGCAGGTACTATGCGTACC
26194187 AGATAGCTTC
Statistics
Matches: 70, Mismatches: 7, Indels: 11
0.80 0.08 0.12
Matches are distributed among these distances:
47 1 0.01
48 6 0.09
49 10 0.14
50 44 0.63
51 9 0.13
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.29
Consensus pattern (50 bp):
TGTGTAGTACTAAGTGCAGGTACTATGCGTACCTAAAATGGTGAGTCACG
Found at i:26195280 original size:87 final size:87
Alignment explanation
Indices: 26195182--26195351 Score: 313
Period size: 87 Copynumber: 2.0 Consensus size: 87
26195172 AAAAGGGCTG
*
26195182 AATCGGTAAAAATACCTAATAGTCATAAGTACATGTTAGAGTGAGAATTTGATGTTGCCATAGAA
1 AATCGGTAAAAATACCTAATAGTCATAAGTACATGTTAGAGTGAGAATTTGATGTTGCAATAGAA
26195247 GAGAAAAATGATCAGCATGCTT
66 GAGAAAAATGATCAGCATGCTT
26195269 AATCGGTAAAAATACCTAATAGTCATAAGTACATGTTAGAGTGAGAATTTGATGTTGCAATAGAA
1 AATCGGTAAAAATACCTAATAGTCATAAGTACATGTTAGAGTGAGAATTTGATGTTGCAATAGAA
* *
26195334 GGGTAAAATGATCAGCAT
66 GAGAAAAATGATCAGCAT
26195352 ATCATAAAAC
Statistics
Matches: 80, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
87 80 1.00
ACGTcount: A:0.41, C:0.11, G:0.21, T:0.28
Consensus pattern (87 bp):
AATCGGTAAAAATACCTAATAGTCATAAGTACATGTTAGAGTGAGAATTTGATGTTGCAATAGAA
GAGAAAAATGATCAGCATGCTT
Found at i:26195916 original size:60 final size:60
Alignment explanation
Indices: 26195823--26195942 Score: 222
Period size: 60 Copynumber: 2.0 Consensus size: 60
26195813 TAAAAGCTGA
* *
26195823 TTTGATATTTGAGTTGTGTCTTATTGTACTATGAATGGACAATTGGTACTATGGATAGTG
1 TTTGATATTGGAGTTGTGTCTTATTATACTATGAATGGACAATTGGTACTATGGATAGTG
26195883 TTTGATATTGGAGTTGTGTCTTATTATACTATGAATGGACAATTGGTACTATGGATAGTG
1 TTTGATATTGGAGTTGTGTCTTATTATACTATGAATGGACAATTGGTACTATGGATAGTG
26195943 AGATCGACAC
Statistics
Matches: 58, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
60 58 1.00
ACGTcount: A:0.26, C:0.07, G:0.25, T:0.42
Consensus pattern (60 bp):
TTTGATATTGGAGTTGTGTCTTATTATACTATGAATGGACAATTGGTACTATGGATAGTG
Found at i:26197493 original size:81 final size:81
Alignment explanation
Indices: 26197402--26197563 Score: 315
Period size: 81 Copynumber: 2.0 Consensus size: 81
26197392 TAGTGTGACT
26197402 AATTATTAGGCTAAATGTGATATTATAGGCTAAAATGGTAAATTACTGTTTCTGGATCGAGGTAA
1 AATTATTAGGCTAAATGTGATATTATAGGCTAAAATGGTAAATTACTGTTTCTGGATCGAGGTAA
26197467 GTTCGTATGATAATAA
66 GTTCGTATGATAATAA
26197483 AATTATTAGGCTAAATGTGATATTATAGGCTAAAATGGTAAATTACTGTTTCTGGATCGAGGTAA
1 AATTATTAGGCTAAATGTGATATTATAGGCTAAAATGGTAAATTACTGTTTCTGGATCGAGGTAA
*
26197548 GTTCGTATGATTATAA
66 GTTCGTATGATAATAA
26197564 CAATGCAATG
Statistics
Matches: 80, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
81 80 1.00
ACGTcount: A:0.35, C:0.07, G:0.21, T:0.36
Consensus pattern (81 bp):
AATTATTAGGCTAAATGTGATATTATAGGCTAAAATGGTAAATTACTGTTTCTGGATCGAGGTAA
GTTCGTATGATAATAA
Found at i:26198118 original size:51 final size:50
Alignment explanation
Indices: 26198052--26198189 Score: 177
Period size: 50 Copynumber: 2.7 Consensus size: 50
26198042 TGAGGTTGCA
* * *
26198052 TGTGTAGTACTAAGTGCAGGCTACTATGCGTCCCCGAAAAGTGTGATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAG-AAAGTGAGATCACG
* ** ** *
26198103 TGTGTAGTACTAAGTGCAGGCTACTATGTGTATTAGATGGTGAGGTCACG
1 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGAAAGTGAGATCACG
*
26198153 TGTGTAGTACTAAGTACAGGCTACTATGCGTACCAGA
1 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGA
26198190 TAGCTTCGGC
Statistics
Matches: 74, Mismatches: 13, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
50 43 0.58
51 31 0.42
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.28
Consensus pattern (50 bp):
TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGAAAGTGAGATCACG
Found at i:26198133 original size:26 final size:26
Alignment explanation
Indices: 26198103--26198180 Score: 65
Period size: 26 Copynumber: 3.1 Consensus size: 26
26198093 TGTGATCACG
26198103 TGTGTAGTACTAAGTGCAGGCTACTA
1 TGTGTAGTACTAAGTGCAGGCTACTA
* * * *
26198129 TGTGTATTA-GATGGTG-AGG-TCAC-G
1 TGTGTAGTACTA-AGTGCAGGCT-ACTA
*
26198153 TGTGTAGTACTAAGTACAGGCTACTA
1 TGTGTAGTACTAAGTGCAGGCTACTA
26198179 TG
1 TG
26198181 CGTACCAGAT
Statistics
Matches: 37, Mismatches: 9, Indels: 12
0.64 0.16 0.21
Matches are distributed among these distances:
24 11 0.30
25 12 0.32
26 14 0.38
ACGTcount: A:0.26, C:0.13, G:0.29, T:0.32
Consensus pattern (26 bp):
TGTGTAGTACTAAGTGCAGGCTACTA
Found at i:26200819 original size:49 final size:48
Alignment explanation
Indices: 26200744--26200921 Score: 195
Period size: 49 Copynumber: 3.7 Consensus size: 48
26200734 AGGGTATAAT
* * *
26200744 GCCGATGCCATGTCCTAGACATGGTCTTACACTGACTATCGTCATCGAG
1 GCCGATGCCATGTCCCAAACATGGTCTTACACTGGCT-TCGTCATCGAG
* * *
26200793 GCTGATGCCATGTCCCAAACATGGTCTTACATTGGCTCTCG-CATATTC-AT
1 GCCGATGCCATGTCCCAAACATGGTCTTACACTGGCT-TCGTC--A-TCGAG
* *
26200843 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTTACTTCA-CGAG
1 GCCGATGCCATGTCCCAAACATGGTCTTACACTGGCTT-CGTCATCGAG
26200891 GCCGATG-CATGTCCCAAACAT-GTCTTACACT
1 GCCGATGCCATGTCCCAAACATGGTCTTACACT
26200922 AGCTCACAGT
Statistics
Matches: 110, Mismatches: 13, Indels: 15
0.80 0.09 0.11
Matches are distributed among these distances:
46 10 0.09
47 14 0.13
48 9 0.08
49 37 0.34
50 37 0.34
51 3 0.03
ACGTcount: A:0.22, C:0.30, G:0.20, T:0.28
Consensus pattern (48 bp):
GCCGATGCCATGTCCCAAACATGGTCTTACACTGGCTTCGTCATCGAG
Found at i:26201177 original size:6 final size:6
Alignment explanation
Indices: 26201166--26201199 Score: 68
Period size: 6 Copynumber: 5.7 Consensus size: 6
26201156 GCAATTCCTT
26201166 AAAATA AAAATA AAAATA AAAATA AAAATA AAAA
1 AAAATA AAAATA AAAATA AAAATA AAAATA AAAA
26201200 GAGGGCTTCC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 28 1.00
ACGTcount: A:0.85, C:0.00, G:0.00, T:0.15
Consensus pattern (6 bp):
AAAATA
Done.