Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr3
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 100348136
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 3062571 characters in sequence are not A, C, G, or T
File 80 of 290
Found at i:26551401 original size:18 final size:19
Alignment explanation
Indices: 26551361--26551402 Score: 50
Period size: 18 Copynumber: 2.3 Consensus size: 19
26551351 TATAGAAAAT
*
26551361 AAAATATATAAAAAAATAC
1 AAAATATATAAAAAAATAA
* *
26551380 AAAATAT-TAACATAATAA
1 AAAATATATAAAAAAATAA
26551398 AAAAT
1 AAAAT
26551403 CTTCAAAACA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
18 13 0.65
19 7 0.35
ACGTcount: A:0.71, C:0.05, G:0.00, T:0.24
Consensus pattern (19 bp):
AAAATATATAAAAAAATAA
Found at i:26553299 original size:6 final size:6
Alignment explanation
Indices: 26553288--26553329 Score: 50
Period size: 6 Copynumber: 6.8 Consensus size: 6
26553278 AGGCAACCTA
*
26553288 ATTTTT ATTTTT A-TTTT ATTTTAT CTTTTT ATTTATT ATTTT
1 ATTTTT ATTTTT ATTTTT ATTTT-T ATTTTT ATTT-TT ATTTT
26553330 GAGATATTAA
Statistics
Matches: 31, Mismatches: 2, Indels: 6
0.79 0.05 0.15
Matches are distributed among these distances:
5 5 0.16
6 15 0.48
7 11 0.35
ACGTcount: A:0.19, C:0.02, G:0.00, T:0.79
Consensus pattern (6 bp):
ATTTTT
Found at i:26554759 original size:10 final size:10
Alignment explanation
Indices: 26554735--26554768 Score: 50
Period size: 10 Copynumber: 3.3 Consensus size: 10
26554725 ATTCAGTTTT
*
26554735 TTCTTCTTCTT
1 TTCTT-TTCTC
26554746 TTCTTTTCTC
1 TTCTTTTCTC
26554756 TTCTTTTCTC
1 TTCTTTTCTC
26554766 TTC
1 TTC
26554769 ATCTACTTTC
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
10 17 0.77
11 5 0.23
ACGTcount: A:0.00, C:0.29, G:0.00, T:0.71
Consensus pattern (10 bp):
TTCTTTTCTC
Found at i:26554759 original size:15 final size:16
Alignment explanation
Indices: 26554733--26554782 Score: 57
Period size: 15 Copynumber: 3.1 Consensus size: 16
26554723 GGATTCAGTT
*
26554733 TTTTCTTCTTCTTTTC
1 TTTTCATCTTCTTTTC
26554749 TTTTC-TCTTCTTTTC
1 TTTTCATCTTCTTTTC
* *
26554764 TCTTCATCTACTTTCTC
1 TTTTCATCTTCTTT-TC
26554781 TT
1 TT
26554783 CTTCTTTTCC
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
15 14 0.48
16 12 0.41
17 3 0.10
ACGTcount: A:0.04, C:0.28, G:0.00, T:0.68
Consensus pattern (16 bp):
TTTTCATCTTCTTTTC
Found at i:26557478 original size:24 final size:26
Alignment explanation
Indices: 26557437--26557498 Score: 76
Period size: 25 Copynumber: 2.4 Consensus size: 26
26557427 CTTCAAACCT
26557437 TAGCCGAATCTTC-ATCATCA-TTCACC
1 TAGCC-AAT-TTCTATCATCATTTCACC
*
26557463 TAGCC-ATTTCTATCATCATTTCACT
1 TAGCCAATTTCTATCATCATTTCACC
26557488 TAGCCAATTTC
1 TAGCCAATTTC
26557499 AACCCGTCTC
Statistics
Matches: 32, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
23 3 0.09
24 9 0.28
25 10 0.31
26 10 0.31
ACGTcount: A:0.26, C:0.31, G:0.06, T:0.37
Consensus pattern (26 bp):
TAGCCAATTTCTATCATCATTTCACC
Found at i:26560307 original size:81 final size:80
Alignment explanation
Indices: 26560164--26560324 Score: 232
Period size: 81 Copynumber: 2.0 Consensus size: 80
26560154 CGTTAAGACC
* * *
26560164 CCAGATTGTAAAATTACTGAAATACCCTACTTTGTAAAATTACTGAAATACCCCCAGCTTGTAAA
1 CCAGATTGTAAAATTACTAAAATACCCTACTTTGTAAAATTACTAAAATACCCCCAACTTGTAAA
*
26560229 ATTACCGAAATACCT
66 ATTACCAAAATACCT
* * * *
26560244 CCAGTTTGTAAAATTACTAAAATACCCCTAGTTTGTAAAATTACTAAAATACCCCTAATTTGTAA
1 CCAGATTGTAAAATTACTAAAATA-CCCTACTTTGTAAAATTACTAAAATACCCCCAACTTGTAA
*
26560309 AATTATCAAAATACCT
65 AATTACCAAAATACCT
26560325 TTGTAGTCTA
Statistics
Matches: 71, Mismatches: 9, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
80 22 0.31
81 49 0.69
ACGTcount: A:0.40, C:0.20, G:0.08, T:0.31
Consensus pattern (80 bp):
CCAGATTGTAAAATTACTAAAATACCCTACTTTGTAAAATTACTAAAATACCCCCAACTTGTAAA
ATTACCAAAATACCT
Found at i:26560319 original size:27 final size:27
Alignment explanation
Indices: 26560161--26560323 Score: 199
Period size: 27 Copynumber: 6.1 Consensus size: 27
26560151 GATCGTTAAG
* *
26560161 ACCCC-AGATTGTAAAATTACTGAAAT
1 ACCCCTAGTTTGTAAAATTACTAAAAT
* *
26560187 A-CCCTACTTTGTAAAATTACTGAAAT
1 ACCCCTAGTTTGTAAAATTACTAAAAT
* * **
26560213 ACCCCCAGCTTGTAAAATTACCGAAAT
1 ACCCCTAGTTTGTAAAATTACTAAAAT
26560240 ACCTCC-AGTTTGTAAAATTACTAAAAT
1 ACC-CCTAGTTTGTAAAATTACTAAAAT
26560267 ACCCCTAGTTTGTAAAATTACTAAAAT
1 ACCCCTAGTTTGTAAAATTACTAAAAT
*
26560294 ACCCCTAATTTGTAAAATTA-TCAAAAT
1 ACCCCTAGTTTGTAAAATTACT-AAAAT
26560321 ACC
1 ACC
26560324 TTTGTAGTCT
Statistics
Matches: 122, Mismatches: 10, Indels: 9
0.87 0.07 0.06
Matches are distributed among these distances:
25 3 0.02
26 24 0.20
27 93 0.76
28 2 0.02
ACGTcount: A:0.40, C:0.21, G:0.08, T:0.30
Consensus pattern (27 bp):
ACCCCTAGTTTGTAAAATTACTAAAAT
Found at i:26560336 original size:27 final size:27
Alignment explanation
Indices: 26560306--26560384 Score: 122
Period size: 27 Copynumber: 2.9 Consensus size: 27
26560296 CCCTAATTTG
* *
26560306 TAAAATTATCAAAATACCTTTGTAGTC
1 TAAAATTATCGAAATACCCTTGTAGTC
*
26560333 TAAAATTATCGAAATACCCTTGTAGTG
1 TAAAATTATCGAAATACCCTTGTAGTC
*
26560360 TAAAATTACCGAAATACCCTTGTAG
1 TAAAATTATCGAAATACCCTTGTAG
26560385 GGCAAAATGA
Statistics
Matches: 48, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 48 1.00
ACGTcount: A:0.39, C:0.16, G:0.11, T:0.33
Consensus pattern (27 bp):
TAAAATTATCGAAATACCCTTGTAGTC
Found at i:26560348 original size:54 final size:52
Alignment explanation
Indices: 26560172--26560351 Score: 159
Period size: 54 Copynumber: 3.3 Consensus size: 52
26560162 CCCCAGATTG
* * * * *
26560172 TAAAATTACTGAAATACCCTACTTTGTAAAATTACTGAAATACCCCCAGCT-TG
1 TAAAATTAC-GAAATACCCCAATTTGTAAAATTACTAAAATACCCCTAG-TGTC
* * *
26560225 TAAAATTACCGAAATACCTCCAGTTTGTAAAATTACTAAAATACCCCTAGTTTG
1 TAAAATTA-CGAAATACC-CCAATTTGTAAAATTACTAAAATACCCCTAGTGTC
* * *
26560279 TAAAATTACTAAAATACCCCTAATTTGTAAAATTA-TCAAAATA-CCTTTGTAGTC
1 TAAAATTAC-GAAATACCCC-AATTTGTAAAATTACT-AAAATACCCCTAGT-GTC
26560333 TAAAATTATCGAAATACCC
1 TAAAATTA-CGAAATACCC
26560352 TTGTAGTGTA
Statistics
Matches: 108, Mismatches: 11, Indels: 15
0.81 0.08 0.11
Matches are distributed among these distances:
53 26 0.24
54 81 0.75
55 1 0.01
ACGTcount: A:0.41, C:0.20, G:0.08, T:0.32
Consensus pattern (52 bp):
TAAAATTACGAAATACCCCAATTTGTAAAATTACTAAAATACCCCTAGTGTC
Found at i:26560348 original size:81 final size:80
Alignment explanation
Indices: 26560172--26560378 Score: 229
Period size: 81 Copynumber: 2.6 Consensus size: 80
26560162 CCCCAGATTG
* * *
26560172 TAAAATTACTGAAATACCCTACTTTGTAAAATTACTGAAATACCCCCAGCTTGTAAAATTACCGA
1 TAAAATTACTGAAATACCCTAGTTTGTAAAATTACTGAAATACCCCCAACTTGTAAAATTACCAA
* *
26560237 AATACCTCCAGTTTG
66 AATACCTCCAGTGTC
* * * * *
26560252 TAAAATTACTAAAATACCCCTAGTTTGTAAAATTACTAAAATACCCCTAATTTGTAAAATTATCA
1 TAAAATTACTGAAATA-CCCTAGTTTGTAAAATTACTGAAATACCCCCAACTTGTAAAATTACCA
**
26560317 AAATACCT-TTGTAGTC
65 AAATACCTCCAGT-GTC
* * *
26560333 TAAAATTA-TCGAAATACCCTTGTAGTGTAAAATTACCGAAATACCC
1 TAAAATTACT-GAAATACCCTAGT-TTGTAAAATTACTGAAATACCC
26560379 TTGTAGGGCA
Statistics
Matches: 106, Mismatches: 17, Indels: 7
0.82 0.13 0.05
Matches are distributed among these distances:
80 24 0.23
81 82 0.77
ACGTcount: A:0.40, C:0.20, G:0.09, T:0.31
Consensus pattern (80 bp):
TAAAATTACTGAAATACCCTAGTTTGTAAAATTACTGAAATACCCCCAACTTGTAAAATTACCAA
AATACCTCCAGTGTC
Found at i:26560799 original size:22 final size:21
Alignment explanation
Indices: 26560774--26560814 Score: 64
Period size: 22 Copynumber: 1.9 Consensus size: 21
26560764 CCAACCTAAA
26560774 TATGGCTCTGTGATATATTGAT
1 TATGGCTCTGTGATA-ATTGAT
*
26560796 TATGGCTTTGTGATAATTG
1 TATGGCTCTGTGATAATTG
26560815 TATCTACCAG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 4 0.22
22 14 0.78
ACGTcount: A:0.22, C:0.07, G:0.24, T:0.46
Consensus pattern (21 bp):
TATGGCTCTGTGATAATTGAT
Found at i:26563313 original size:28 final size:27
Alignment explanation
Indices: 26563264--26563345 Score: 87
Period size: 28 Copynumber: 3.1 Consensus size: 27
26563254 TGGAGGAAGC
* *
26563264 GTTCT-GTGGCCATGCCATAAATATCT
1 GTTCTAGTGGCTATGCCACAAATATCT
* * *
26563290 ATTTTTGGTGGCTATGCCACAAATATCT
1 -GTTCTAGTGGCTATGCCACAAATATCT
*
26563318 GTTCTAGTGGCTCTGCCAC-AATATCT
1 GTTCTAGTGGCTATGCCACAAATATCT
26563344 GT
1 GT
26563346 ATCTGGTGAC
Statistics
Matches: 46, Mismatches: 8, Indels: 3
0.81 0.14 0.05
Matches are distributed among these distances:
26 9 0.20
27 18 0.39
28 19 0.41
ACGTcount: A:0.22, C:0.22, G:0.20, T:0.37
Consensus pattern (27 bp):
GTTCTAGTGGCTATGCCACAAATATCT
Found at i:26563335 original size:27 final size:27
Alignment explanation
Indices: 26563297--26563368 Score: 83
Period size: 27 Copynumber: 2.7 Consensus size: 27
26563287 TCTATTTTTG
*
26563297 GTGGCTATGCCACAAATATCTGT-TCTA
1 GTGGCTCTGCCAC-AATATCTGTATCTA
*
26563324 GTGGCTCTGCCACAATATCTGTATCTG
1 GTGGCTCTGCCACAATATCTGTATCTA
* **
26563351 GTGACTCTGTTACAATAT
1 GTGGCTCTGCCACAATAT
26563369 TTATTCTGGC
Statistics
Matches: 39, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
26 9 0.23
27 30 0.77
ACGTcount: A:0.24, C:0.22, G:0.19, T:0.35
Consensus pattern (27 bp):
GTGGCTCTGCCACAATATCTGTATCTA
Found at i:26591282 original size:33 final size:33
Alignment explanation
Indices: 26591228--26591293 Score: 89
Period size: 33 Copynumber: 2.0 Consensus size: 33
26591218 GCTTGTAAAG
*
26591228 ATAAATCGATCTCTTTTTTTATGGCCATAGAGA
1 ATAAATCGATCTCTTTTTTTATGGCAATAGAGA
* *
26591261 ATAAATCTATCT-TTTTGTTTATGGTAATAGAGA
1 ATAAATCGATCTCTTTT-TTTATGGCAATAGAGA
26591294 TCGGCTTGTT
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
32 4 0.14
33 25 0.86
ACGTcount: A:0.32, C:0.11, G:0.15, T:0.42
Consensus pattern (33 bp):
ATAAATCGATCTCTTTTTTTATGGCAATAGAGA
Found at i:26594981 original size:94 final size:93
Alignment explanation
Indices: 26594877--26595052 Score: 223
Period size: 94 Copynumber: 1.9 Consensus size: 93
26594867 CAACTCTTAG
* *
26594877 CCGATGCATGTCCCAGACAT-GTCTTACAT-TTGCTATCACT-ATCGAGGCCGGTGCATGTCCCA
1 CCGATGCATGTCCCAGACATGGTCTTAC-TCTGGCTATCA-TAAT-GAGGCCGATGCATGTCCCA
26594939 GACATGTCTTAAACTAGCACTCGTCTCAATA
63 GACATGTCTTAAACTAGCACTCGTCTCAATA
* * ** *
26594970 CCGATGCCATGTCCTAGACATGGTCTTACTCTGGCTCTCATAATTTGGCTGATGCATGTCCCAGA
1 CCGATG-CATGTCCCAGACATGGTCTTACTCTGGCTATCATAATGAGGCCGATGCATGTCCCAGA
*
26595035 CATGTCTTACACTAGCAC
65 CATGTCTTAAACTAGCAC
26595053 ACACAAGTGA
Statistics
Matches: 71, Mismatches: 8, Indels: 7
0.83 0.09 0.08
Matches are distributed among these distances:
93 6 0.08
94 49 0.69
95 16 0.23
ACGTcount: A:0.23, C:0.29, G:0.19, T:0.29
Consensus pattern (93 bp):
CCGATGCATGTCCCAGACATGGTCTTACTCTGGCTATCATAATGAGGCCGATGCATGTCCCAGAC
ATGTCTTAAACTAGCACTCGTCTCAATA
Found at i:26597921 original size:27 final size:27
Alignment explanation
Indices: 26597890--26598074 Score: 196
Period size: 27 Copynumber: 6.9 Consensus size: 27
26597880 AGACCCCGGA
*
26597890 TTGTAAAATTATTAAAATACCCTCAGT
1 TTGTAAAATTATCAAAATACCCTCAGT
* *
26597917 TTGTAAAATTATCAAAATACCCCCGGT
1 TTGTAAAATTATCAAAATACCCTCAGT
** *
26597944 TTGTAAAATTATTGAAATACTCC-CAAT
1 TTGTAAAATTATCAAAATAC-CCTCAGT
* *
26597971 TTGTAAAATTA-CTGAAATACCCTTAGT
1 TTGTAAAATTATC-AAAATACCCTCAGT
*
26597998 TTGTAAAATTACCAAAATACCCTCAGT
1 TTGTAAAATTATCAAAATACCCTCAGT
* *
26598025 TTGTAAAATTATCGAAATACCC-CTGT
1 TTGTAAAATTATCAAAATACCCTCAGT
* * *
26598051 AGTGTAAAATTACCCAAATACCCT
1 -TTGTAAAATTATCAAAATACCCT
26598075 TGTAGTGTAA
Statistics
Matches: 134, Mismatches: 18, Indels: 11
0.82 0.11 0.07
Matches are distributed among these distances:
26 5 0.04
27 126 0.94
28 3 0.02
ACGTcount: A:0.39, C:0.19, G:0.09, T:0.33
Consensus pattern (27 bp):
TTGTAAAATTATCAAAATACCCTCAGT
Found at i:26597963 original size:54 final size:54
Alignment explanation
Indices: 26597883--26598047 Score: 217
Period size: 54 Copynumber: 3.1 Consensus size: 54
26597873 GTCATTAAGA
* *
26597883 CCCCGGATTGTAAAATTATTAAAATACCCTCAGTTTGTAAAATTATCAAAATAC
1 CCCCGGTTTGTAAAATTATTAAAATACCCTCAGTTTGTAAAATTATCGAAATAC
* *
26597937 CCCCGGTTTGTAAAATTATTGAAATACTCC-CAATTTGTAAAATTA-CTGAAATAC
1 CCCCGGTTTGTAAAATTATTAAAATAC-CCTCAGTTTGTAAAATTATC-GAAATAC
*** **
26597991 CCTTAGTTTGTAAAATTACCAAAATACCCTCAGTTTGTAAAATTATCGAAATAC
1 CCCCGGTTTGTAAAATTATTAAAATACCCTCAGTTTGTAAAATTATCGAAATAC
26598045 CCC
1 CCC
26598048 TGTAGTGTAA
Statistics
Matches: 95, Mismatches: 12, Indels: 8
0.83 0.10 0.07
Matches are distributed among these distances:
53 3 0.03
54 89 0.94
55 3 0.03
ACGTcount: A:0.38, C:0.20, G:0.10, T:0.32
Consensus pattern (54 bp):
CCCCGGTTTGTAAAATTATTAAAATACCCTCAGTTTGTAAAATTATCGAAATAC
Found at i:26598027 original size:81 final size:81
Alignment explanation
Indices: 26597889--26598091 Score: 257
Period size: 81 Copynumber: 2.5 Consensus size: 81
26597879 AAGACCCCGG
* * * *
26597889 ATTGTAAAATTATTAAAATACCCTCAGTTTGTAAAATTATCAAAATACCCCCGGTTTGTAAAATT
1 ATTGTAAAATTACTAAAATACCCTTAGTTTGTAAAATTACCAAAATACCCCCAGTTTGTAAAATT
*
26597954 ATTGAAATACTCCCAAT
66 ATCGAAATAC-CCCAAT
* *
26597971 -TTGTAAAATTACTGAAATACCCTTAGTTTGTAAAATTACCAAAATACCCTCAGTTTGTAAAATT
1 ATTGTAAAATTACTAAAATACCCTTAGTTTGTAAAATTACCAAAATACCCCCAGTTTGTAAAATT
**
26598035 ATCGAAATACCCCTGT
66 ATCGAAATACCCCAAT
* ** *
26598051 AGTGTAAAATTACCCAAATACCCTT-GTAGTGTAAAATTACC
1 ATTGTAAAATTACTAAAATACCCTTAGT-TTGTAAAATTACC
26598092 GGAATACCTC
Statistics
Matches: 106, Mismatches: 13, Indels: 5
0.85 0.10 0.04
Matches are distributed among these distances:
80 6 0.06
81 100 0.94
ACGTcount: A:0.39, C:0.18, G:0.10, T:0.33
Consensus pattern (81 bp):
ATTGTAAAATTACTAAAATACCCTTAGTTTGTAAAATTACCAAAATACCCCCAGTTTGTAAAATT
ATCGAAATACCCCAAT
Found at i:26598078 original size:27 final size:26
Alignment explanation
Indices: 26597972--26598099 Score: 139
Period size: 27 Copynumber: 4.8 Consensus size: 26
26597962 ACTCCCAATT
* *
26597972 TGTAAAATTACTGAAATACCCTTAGTT
1 TGTAAAATTACCGAAATACCCTT-GTG
* * *
26597999 TGTAAAATTACCAAAATACCCTCAGTT
1 TGTAAAATTACCGAAATACCCT-TGTG
* *
26598026 TGTAAAATTATCGAAATACCCCTGTAG
1 TGTAAAATTACCGAAATACCCTTGT-G
*
26598053 TGTAAAATTACCCAAATACCCTTGTAG
1 TGTAAAATTACCGAAATACCCTTGT-G
*
26598080 TGTAAAATTACCGGAATACC
1 TGTAAAATTACCGAAATACC
26598100 TCTATAGGGA
Statistics
Matches: 86, Mismatches: 13, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
26 2 0.02
27 84 0.98
ACGTcount: A:0.38, C:0.20, G:0.12, T:0.30
Consensus pattern (26 bp):
TGTAAAATTACCGAAATACCCTTGTG
Found at i:26598084 original size:54 final size:53
Alignment explanation
Indices: 26597890--26598099 Score: 169
Period size: 54 Copynumber: 3.9 Consensus size: 53
26597880 AGACCCCGGA
** * * **
26597890 TTGTAAAATTATTAAAATACCCTCAGTTTGTAAAATTATCAAAATACCCC-CGG
1 TTGTAAAATTACCAAAATACCCTCAGTGTGTAAAATTA-CGAAATACCCCTTAG
*** * *
26597943 TTTGTAAAATTATTGAAATACTCC-CAATTTGTAAAATTACTGAAATA-CCCTTAG
1 -TTGTAAAATTACCAAAATAC-CCTCAGTGTGTAAAATTAC-GAAATACCCCTTAG
*
26597997 TTTGTAAAATTACCAAAATACCCTCAGTTTGTAAAATTATCGAAATACCCCTGTAG
1 -TTGTAAAATTACCAAAATACCCTCAGTGTGTAAAATTA-CGAAATACCCCT-TAG
* * *
26598053 -TGTAAAATTACCCAAATACCCT-TGTAGTGTAAAATTACCGGAATACC
1 TTGTAAAATTACCAAAATACCCTCAGT-GTGTAAAATTA-CGAAATACC
26598100 TCTATAGGGA
Statistics
Matches: 134, Mismatches: 14, Indels: 16
0.82 0.09 0.10
Matches are distributed among these distances:
53 8 0.06
54 116 0.87
55 7 0.05
56 3 0.02
ACGTcount: A:0.39, C:0.19, G:0.10, T:0.32
Consensus pattern (53 bp):
TTGTAAAATTACCAAAATACCCTCAGTGTGTAAAATTACGAAATACCCCTTAG
Found at i:26598114 original size:54 final size:54
Alignment explanation
Indices: 26597972--26598114 Score: 130
Period size: 54 Copynumber: 2.6 Consensus size: 54
26597962 ACTCCCAATT
* * * *
26597972 TGTAAAATTACTGAAATA-CCCT-TAGTTTGTAAAATTACCAAAATACCCTCAGTT
1 TGTAAAATTACCGAAATACCCCTATAG--GGAAAAATTACCAAAATACCCTCAGTG
* * * * * *
26598026 TGTAAAATTATCGAAATACCCCTGTAGTGTAAAATTACCCAAATACCCT-TGTAG
1 TGTAAAATTACCGAAATACCCCTATAGGGAAAAATTACCAAAATACCCTCAGT-G
* *
26598080 TGTAAAATTACCGGAATACCTCTATAGGGAAAAAT
1 TGTAAAATTACCGAAATACCCCTATAGGGAAAAAT
26598115 GACTATTTTG
Statistics
Matches: 75, Mismatches: 11, Indels: 6
0.82 0.12 0.07
Matches are distributed among these distances:
53 2 0.03
54 66 0.88
55 4 0.05
56 3 0.04
ACGTcount: A:0.39, C:0.18, G:0.13, T:0.30
Consensus pattern (54 bp):
TGTAAAATTACCGAAATACCCCTATAGGGAAAAATTACCAAAATACCCTCAGTG
Found at i:26598398 original size:50 final size:50
Alignment explanation
Indices: 26598344--26598442 Score: 119
Period size: 50 Copynumber: 2.0 Consensus size: 50
26598334 GATATGGAGG
*
26598344 AAGTACT-ATTCTGATAGGGTCGCACGGGTCACACGAGACGACTATGGATT
1 AAGTACTGA-TCTGATAAGGTCGCACGGGTCACACGAGACGACTATGGATT
* * * * * *
26598394 AAGTATTGATCTGTTAAGGTCGCATGGGTCGCACGAGATGACTGTGGAT
1 AAGTACTGATCTGATAAGGTCGCACGGGTCACACGAGACGACTATGGAT
26598443 CGATGGACGT
Statistics
Matches: 41, Mismatches: 7, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
50 40 0.98
51 1 0.02
ACGTcount: A:0.26, C:0.17, G:0.30, T:0.26
Consensus pattern (50 bp):
AAGTACTGATCTGATAAGGTCGCACGGGTCACACGAGACGACTATGGATT
Found at i:26598938 original size:27 final size:27
Alignment explanation
Indices: 26598871--26598938 Score: 68
Period size: 27 Copynumber: 2.6 Consensus size: 27
26598861 TGTTACTGAG
* * *
26598871 ATGGGC-TAGGCCCAATTGATTCTGTT
1 ATGGGCTTTGGCCCAAATGATTCTGTA
* *
26598897 ATGGGCTGTGACCCAAATGATAT-TGTA
1 ATGGGCTTTGGCCCAAATGAT-TCTGTA
26598924 ATGGGCTTTGGCCCA
1 ATGGGCTTTGGCCCA
26598939 CTTATGCTCT
Statistics
Matches: 33, Mismatches: 7, Indels: 3
0.77 0.16 0.07
Matches are distributed among these distances:
26 6 0.18
27 26 0.79
28 1 0.03
ACGTcount: A:0.22, C:0.19, G:0.28, T:0.31
Consensus pattern (27 bp):
ATGGGCTTTGGCCCAAATGATTCTGTA
Found at i:26600202 original size:15 final size:17
Alignment explanation
Indices: 26600172--26600204 Score: 52
Period size: 15 Copynumber: 2.1 Consensus size: 17
26600162 GAGAATTTGA
26600172 AAATGAGTTAGAAAAAG
1 AAATGAGTTAGAAAAAG
26600189 AAATGAG-T-GAAAAAG
1 AAATGAGTTAGAAAAAG
26600204 A
1 A
26600205 GGCAAGTGAA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 8 0.50
16 1 0.06
17 7 0.44
ACGTcount: A:0.61, C:0.00, G:0.24, T:0.15
Consensus pattern (17 bp):
AAATGAGTTAGAAAAAG
Found at i:26607053 original size:23 final size:23
Alignment explanation
Indices: 26607023--26607100 Score: 138
Period size: 23 Copynumber: 3.4 Consensus size: 23
26607013 TAGTAGCTAG
26607023 GTCACATGTGTGATACGGGAAGT
1 GTCACATGTGTGATACGGGAAGT
26607046 GTCACATGTGTGATACGGGAAGT
1 GTCACATGTGTGATACGGGAAGT
26607069 GTCACATGTGTGATACGGGAAGT
1 GTCACATGTGTGATACGGGAAGT
* *
26607092 ATCCCATGT
1 GTCACATGT
26607101 AGACAAGAGA
Statistics
Matches: 53, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 53 1.00
ACGTcount: A:0.26, C:0.15, G:0.32, T:0.27
Consensus pattern (23 bp):
GTCACATGTGTGATACGGGAAGT
Found at i:26613504 original size:46 final size:46
Alignment explanation
Indices: 26613454--26613722 Score: 284
Period size: 46 Copynumber: 5.8 Consensus size: 46
26613444 TGGTTGAGCA
26613454 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
26613500 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
26613545 CATCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCGAATG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * *
26613593 TCCGAACTCGTTGAGTTTAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
26613638 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
26613686 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
26613723 GCGGGTTACA
Statistics
Matches: 185, Mismatches: 20, Indels: 36
0.77 0.08 0.15
Matches are distributed among these distances:
42 4 0.02
43 10 0.05
45 6 0.03
46 90 0.49
47 56 0.30
48 6 0.03
50 9 0.05
51 4 0.02
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:26613615 original size:93 final size:93
Alignment explanation
Indices: 26613451--26613715 Score: 485
Period size: 93 Copynumber: 2.8 Consensus size: 93
26613441 GGATGGTTGA
26613451 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
26613516 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
26613544 GCATCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
*
26613609 TTAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* * *
26613637 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
26613702 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
26613716 CTTATGGGCG
Statistics
Matches: 165, Mismatches: 7, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 165 1.00
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:26619538 original size:24 final size:26
Alignment explanation
Indices: 26619465--26619541 Score: 95
Period size: 27 Copynumber: 3.0 Consensus size: 26
26619455 GCGAGGCTGC
* *
26619465 CAGATATTGTGACGAAGTCACCAGATA
1 CAGATATTGTG-CGAGGCCACCAGATA
*
26619492 CAGATATTGTGGCTAGGCCACCAGA-A
1 CAGATATTGT-GCGAGGCCACCAGATA
26619518 CAGATATTGT-CGAGGCCACCAGAT
1 CAGATATTGTGCGAGGCCACCAGAT
26619542 TGCAGCGAGG
Statistics
Matches: 44, Mismatches: 4, Indels: 6
0.81 0.07 0.11
Matches are distributed among these distances:
24 12 0.27
26 11 0.25
27 20 0.45
28 1 0.02
ACGTcount: A:0.32, C:0.22, G:0.25, T:0.21
Consensus pattern (26 bp):
CAGATATTGTGCGAGGCCACCAGATA
Found at i:26628933 original size:14 final size:15
Alignment explanation
Indices: 26628916--26628944 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
26628906 ACACAAAAAT
26628916 TTCACACAT-ATAAA
1 TTCACACATAATAAA
26628930 TTCACACATAATAAA
1 TTCACACATAATAAA
26628945 CACAAAAAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 9 0.64
15 5 0.36
ACGTcount: A:0.52, C:0.21, G:0.00, T:0.28
Consensus pattern (15 bp):
TTCACACATAATAAA
Found at i:26631207 original size:46 final size:45
Alignment explanation
Indices: 26631140--26631314 Score: 163
Period size: 46 Copynumber: 3.8 Consensus size: 45
26631130 TATAACCCGC
*
26631140 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGTAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGC-TTAGTAT
* *
26631186 CCATAAGTGAACTCGGACTCAACTCAACAAGCTCGGATGCCTAGT-T
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG--GCTTAGTAT
* *** * * * * * *
26631232 ACATCTCTCAAACTCGGACTCAACTCAACGAGTTCAGACATTTGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGGGC-TTAGTAT
* *
26631279 CCATAAGTGAACTCGGACTCAGCTCAACGAGTTCGG
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG
26631315 ATGCCCAAAT
Statistics
Matches: 102, Mismatches: 22, Indels: 10
0.76 0.16 0.07
Matches are distributed among these distances:
45 1 0.01
46 67 0.66
47 32 0.31
48 2 0.02
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (45 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCTTAGTAT
Found at i:26631255 original size:93 final size:93
Alignment explanation
Indices: 26631149--26631319 Score: 261
Period size: 93 Copynumber: 1.8 Consensus size: 93
26631139 CCCATAAGTG
* * * *
26631149 AACTCGGACTCAACTCAACGAGCTCGGGCGTTCGTATCCATAAGTGAACTCGGACTCAACTCAAC
1 AACTCGGACTCAACTCAACGAGCTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
26631214 AAGCTCGGATGCCTAGTTACATCTCTCA
66 AAGCTCGGATGCCTAGTTACATCTCTCA
* * *
26631242 AACTCGGACTCAACTCAACGAGTTCAGACATTTGCATCCATAAGTGAACTCGGACTCAGCTCAAC
1 AACTCGGACTCAACTCAACGAGCTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
* *
26631307 GAGTTCGGATGCC
66 AAGCTCGGATGCC
26631320 CAAATATCCT
Statistics
Matches: 69, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
93 69 1.00
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (93 bp):
AACTCGGACTCAACTCAACGAGCTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
AAGCTCGGATGCCTAGTTACATCTCTCA
Found at i:26632907 original size:50 final size:51
Alignment explanation
Indices: 26632843--26632940 Score: 137
Period size: 50 Copynumber: 1.9 Consensus size: 51
26632833 TTAATAAAGT
* *
26632843 CATGCATTTTGTAACTCTCATGTTAGTT-AAGTTTGCATCA-TAAATTATTA
1 CATGCATTATGTAAC-CCCATGTTAGTTAAAGTTTGCATCATTAAATTATTA
* *
26632893 CATGCATTATGTAACCCCGTGTTATTTAAAGTTTGCATCATTAAATTA
1 CATGCATTATGTAACCCCATGTTAGTTAAAGTTTGCATCATTAAATTA
26632941 AGTCATGCAA
Statistics
Matches: 42, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
49 9 0.21
50 26 0.62
51 7 0.17
ACGTcount: A:0.31, C:0.15, G:0.12, T:0.42
Consensus pattern (51 bp):
CATGCATTATGTAACCCCATGTTAGTTAAAGTTTGCATCATTAAATTATTA
Found at i:26632958 original size:51 final size:49
Alignment explanation
Indices: 26632863--26632958 Score: 122
Period size: 51 Copynumber: 1.9 Consensus size: 49
26632853 GTAACTCTCA
* * *
26632863 TGTTAGTTAAGTTTGCATCATAAATTATTACATGCATTATGTAACCCCG
1 TGTTAGTTAAGTTTGCATCATAAATTAGTACATGCAATAAGTAACCCCG
*
26632912 TGTTATTTAAAGTTTGCATCATTAAATTAAGT-CATGCAATAAGTAAC
1 TGTTAGTT-AAGTTTGCATCA-TAAATT-AGTACATGCAATAAGTAAC
26632959 TCATTTGTTC
Statistics
Matches: 40, Mismatches: 4, Indels: 4
0.83 0.08 0.08
Matches are distributed among these distances:
49 7 0.17
50 12 0.30
51 19 0.47
52 2 0.05
ACGTcount: A:0.34, C:0.14, G:0.14, T:0.39
Consensus pattern (49 bp):
TGTTAGTTAAGTTTGCATCATAAATTAGTACATGCAATAAGTAACCCCG
Found at i:26639188 original size:14 final size:13
Alignment explanation
Indices: 26639168--26639199 Score: 55
Period size: 14 Copynumber: 2.4 Consensus size: 13
26639158 AATATTTGAC
26639168 TTGTTCTTAATTA
1 TTGTTCTTAATTA
26639181 TGTGTTCTTAATTA
1 T-TGTTCTTAATTA
26639195 TTGTT
1 TTGTT
26639200 TTGATATTTC
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 5 0.28
14 13 0.72
ACGTcount: A:0.19, C:0.06, G:0.12, T:0.62
Consensus pattern (13 bp):
TTGTTCTTAATTA
Found at i:26640176 original size:44 final size:43
Alignment explanation
Indices: 26640126--26640211 Score: 127
Period size: 44 Copynumber: 2.0 Consensus size: 43
26640116 ACCACAACCA
*
26640126 AGGAGATGGTTGAAAACCAAGAAAATCCGCTAACTCTTCCGANG
1 AGGAGATGGCTGAAAACCAAGAAAATCCGCTAACTCTTCCGA-G
* * *
26640170 AGGAGATGGCTGAAAACCAAGAAAATTCGTTACCTCTTCCGA
1 AGGAGATGGCTGAAAACCAAGAAAATCCGCTAACTCTTCCGA
26640212 TTGCTGTTAA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
44 38 1.00
ACGTcount: A:0.36, C:0.21, G:0.22, T:0.20
Consensus pattern (43 bp):
AGGAGATGGCTGAAAACCAAGAAAATCCGCTAACTCTTCCGAG
Found at i:26643509 original size:13 final size:13
Alignment explanation
Indices: 26643491--26643522 Score: 64
Period size: 13 Copynumber: 2.5 Consensus size: 13
26643481 CCCAAAATGT
26643491 CACACGGCCAAGG
1 CACACGGCCAAGG
26643504 CACACGGCCAAGG
1 CACACGGCCAAGG
26643517 CACACG
1 CACACG
26643523 CCCGTGTGCT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.31, C:0.41, G:0.28, T:0.00
Consensus pattern (13 bp):
CACACGGCCAAGG
Found at i:26647634 original size:13 final size:13
Alignment explanation
Indices: 26647616--26647642 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
26647606 GAAGTAATCG
26647616 CACACGGGCGTGT
1 CACACGGGCGTGT
26647629 CACACGGGCGTGT
1 CACACGGGCGTGT
26647642 C
1 C
26647643 CCTGCCAAGC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.15, C:0.33, G:0.37, T:0.15
Consensus pattern (13 bp):
CACACGGGCGTGT
Found at i:26656267 original size:27 final size:27
Alignment explanation
Indices: 26656228--26656281 Score: 99
Period size: 27 Copynumber: 2.0 Consensus size: 27
26656218 GCCACCTGAG
*
26656228 TTAGAAAAGATTCATAACATATTCCAT
1 TTAGAAAAAATTCATAACATATTCCAT
26656255 TTAGAAAAAATTCATAACATATTCCAT
1 TTAGAAAAAATTCATAACATATTCCAT
26656282 GTTTTGATGC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.46, C:0.15, G:0.06, T:0.33
Consensus pattern (27 bp):
TTAGAAAAAATTCATAACATATTCCAT
Found at i:26657526 original size:16 final size:16
Alignment explanation
Indices: 26657507--26657537 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
26657497 GAATATGTTT
*
26657507 AAATTAAGAACCAAAG
1 AAATTAAAAACCAAAG
26657523 AAATTAAAAACCAAA
1 AAATTAAAAACCAAA
26657538 ATATCGATTA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.68, C:0.13, G:0.06, T:0.13
Consensus pattern (16 bp):
AAATTAAAAACCAAAG
Found at i:26657904 original size:41 final size:43
Alignment explanation
Indices: 26657841--26657951 Score: 136
Period size: 41 Copynumber: 2.6 Consensus size: 43
26657831 CATTGATATG
* * *
26657841 TGATTACGTTTAAGACCATGTCTGGGACAGCGGCATCG-TATT
1 TGATTACGTGTAAGACCATGTCTGGGACAGCGGCATCGAGATA
* * *
26657883 TGATT-CGTGTAAGACCCTGTCTGGGATAGTGGCATCGAGATA
1 TGATTACGTGTAAGACCATGTCTGGGACAGCGGCATCGAGATA
* *
26657925 TGATTACATGTAAGACCAGGTCTGGGA
1 TGATTACGTGTAAGACCATGTCTGGGA
26657952 GTTGGCATTG
Statistics
Matches: 58, Mismatches: 9, Indels: 3
0.83 0.13 0.04
Matches are distributed among these distances:
41 28 0.48
42 12 0.21
43 18 0.31
ACGTcount: A:0.25, C:0.17, G:0.29, T:0.29
Consensus pattern (43 bp):
TGATTACGTGTAAGACCATGTCTGGGACAGCGGCATCGAGATA
Found at i:26658108 original size:51 final size:51
Alignment explanation
Indices: 26658048--26658151 Score: 208
Period size: 51 Copynumber: 2.0 Consensus size: 51
26658038 GTGTAAATCG
26658048 AGCTAAGTGATCAAGTATGTGATAGTTGATTACCTATTTGAAAATAAGGTA
1 AGCTAAGTGATCAAGTATGTGATAGTTGATTACCTATTTGAAAATAAGGTA
26658099 AGCTAAGTGATCAAGTATGTGATAGTTGATTACCTATTTGAAAATAAGGTA
1 AGCTAAGTGATCAAGTATGTGATAGTTGATTACCTATTTGAAAATAAGGTA
26658150 AG
1 AG
26658152 TTGGCTATTT
Statistics
Matches: 53, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
51 53 1.00
ACGTcount: A:0.38, C:0.08, G:0.22, T:0.33
Consensus pattern (51 bp):
AGCTAAGTGATCAAGTATGTGATAGTTGATTACCTATTTGAAAATAAGGTA
Found at i:26660074 original size:37 final size:37
Alignment explanation
Indices: 26660021--26660161 Score: 201
Period size: 37 Copynumber: 3.8 Consensus size: 37
26660011 CGAATAGTCC
* * *
26660021 CCACACGTAGTTATCGGGTCTTACCCGGAAAAAACCT
1 CCACACGTAGTCATCGGGTCTTACCCGGAAATAATCT
* *
26660058 CCACATGTAGTCATCGGGTCTTACCCGGACATAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGAAATAATCT
* *
26660095 CCACACGTAGTCATCGGGTCTTACTCGGACATAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGAAATAATCT
* *
26660132 CCACATGTAGTCATCAGGTCTTACCCGGAA
1 CCACACGTAGTCATCGGGTCTTACCCGGAA
26660162 TATATTTCCA
Statistics
Matches: 93, Mismatches: 11, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
37 93 1.00
ACGTcount: A:0.26, C:0.30, G:0.19, T:0.25
Consensus pattern (37 bp):
CCACACGTAGTCATCGGGTCTTACCCGGAAATAATCT
Found at i:26660142 original size:74 final size:74
Alignment explanation
Indices: 26660021--26660160 Score: 226
Period size: 74 Copynumber: 1.9 Consensus size: 74
26660011 CGAATAGTCC
* *
26660021 CCACACGTAGTTATCGGGTCTTACCCGGAAAAAACCTCCACATGTAGTCATCGGGTCTTACCCGG
1 CCACACGTAGTCATCGGGTCTTACCCGGAAAAAACCTCCACATGTAGTCATCAGGTCTTACCCGG
26660086 ACATAATCT
66 ACATAATCT
* * * *
26660095 CCACACGTAGTCATCGGGTCTTACTCGGACATAATCTCCACATGTAGTCATCAGGTCTTACCCGG
1 CCACACGTAGTCATCGGGTCTTACCCGGAAAAAACCTCCACATGTAGTCATCAGGTCTTACCCGG
26660160 A
66 A
26660161 ATATATTTCC
Statistics
Matches: 60, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
74 60 1.00
ACGTcount: A:0.26, C:0.30, G:0.19, T:0.25
Consensus pattern (74 bp):
CCACACGTAGTCATCGGGTCTTACCCGGAAAAAACCTCCACATGTAGTCATCAGGTCTTACCCGG
ACATAATCT
Found at i:26660363 original size:48 final size:48
Alignment explanation
Indices: 26660311--26660974 Score: 1213
Period size: 48 Copynumber: 13.8 Consensus size: 48
26660301 ATCTCCTACG
*
26660311 TATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACA
1 TATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATATA
*
26660359 TATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTTATATA
1 TATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATATA
* *
26660407 TATTTCACATTAGCCATTCGGCTTTTCCACATATACATATCTCAT-TCA
1 TATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATAT-A
* *
26660455 TATTTCACACTAGCCATTCGACTTTACCACATATACATATCTCATACA
1 TATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATATA
*
26660503 TATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATA
1 TATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATATA
26660551 TATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATATA
1 TATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATATA
26660599 TATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATATA
1 TATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATATA
26660647 TATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATATA
1 TATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATATA
26660695 TATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATATA
1 TATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATATA
26660743 TATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATATA
1 TATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATATA
26660791 TATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATATA
1 TATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATATA
26660839 TATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATATA
1 TATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATATA
26660887 TATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATATA
1 TATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATATA
* * * *
26660935 TATTTCACATTAGCCATTCAGCTTTACCACACATATATAT
1 TATTTCACACTAGCCATTCGGCTTTACCACATATACATAT
26660975 ATTTATCTTG
Statistics
Matches: 597, Mismatches: 17, Indels: 4
0.97 0.03 0.01
Matches are distributed among these distances:
47 1 0.00
48 596 1.00
ACGTcount: A:0.31, C:0.27, G:0.06, T:0.36
Consensus pattern (48 bp):
TATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATATA
Found at i:26663329 original size:73 final size:73
Alignment explanation
Indices: 26663174--26663329 Score: 242
Period size: 73 Copynumber: 2.1 Consensus size: 73
26663164 CGAGAGGATT
* * *
26663174 TAAAAGGAAATTAGACCCAAAATTTATTTGGGCTGGATGGCAAGGGCATGAAATCAGCAGGAAAA
1 TAAAAGGCAATTAGACCCAAAATTTATTTGGGCTGGACGGCAAGGGCATGAAAACAGCAGGAAAA
*
26663239 TTGATAAN
66 TTGATAAA
26663247 TAAAAGGCAATTAGACCCAAAATTTATTAT-GGCTGGACGGCAAGGGCATGAAAACAGCAGGAAA
1 TAAAAGGCAATTAGACCCAAAATTTATT-TGGGCTGGACGGCAAGGGCATGAAAACAGCAGGAAA
26663311 ATTGATAAA
65 ATTGATAAA
* *
26663320 TTAAGGGCAA
1 TAAAAGGCAA
26663330 AATTGGAATA
Statistics
Matches: 76, Mismatches: 6, Indels: 2
0.90 0.07 0.02
Matches are distributed among these distances:
73 75 0.99
74 1 0.01
ACGTcount: A:0.42, C:0.12, G:0.24, T:0.21
Consensus pattern (73 bp):
TAAAAGGCAATTAGACCCAAAATTTATTTGGGCTGGACGGCAAGGGCATGAAAACAGCAGGAAAA
TTGATAAA
Found at i:26665061 original size:5 final size:6
Alignment explanation
Indices: 26665040--26665077 Score: 51
Period size: 6 Copynumber: 6.5 Consensus size: 6
26665030 CAATAAACAT
* *
26665040 AAAAAG AAAAAT TAAAAG -AAAAG AAAAAG AAAAAG AAA
1 AAAAAG AAAAAG AAAAAG AAAAAG AAAAAG AAAAAG AAA
26665078 TCTAAAGACA
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
5 5 0.18
6 23 0.82
ACGTcount: A:0.82, C:0.00, G:0.13, T:0.05
Consensus pattern (6 bp):
AAAAAG
Found at i:26665063 original size:17 final size:17
Alignment explanation
Indices: 26665041--26665077 Score: 56
Period size: 17 Copynumber: 2.2 Consensus size: 17
26665031 AATAAACATA
**
26665041 AAAAGAAAAATTAAAAG
1 AAAAGAAAAAGAAAAAG
26665058 AAAAGAAAAAGAAAAAG
1 AAAAGAAAAAGAAAAAG
26665075 AAA
1 AAA
26665078 TCTAAAGACA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.81, C:0.00, G:0.14, T:0.05
Consensus pattern (17 bp):
AAAAGAAAAAGAAAAAG
Found at i:26666678 original size:5 final size:5
Alignment explanation
Indices: 26666668--26666722 Score: 60
Period size: 5 Copynumber: 11.2 Consensus size: 5
26666658 GAATAATAGT
* * *
26666668 AATAA AAT-A AATAA AAGAA AA-AG AATAA AATAA TAATAA AATAT AATAA
1 AATAA AATAA AATAA AATAA AATAA AATAA AATAA -AATAA AATAA AATAA
26666717 AATAA A
1 AATAA A
26666723 TGGGGGAAAA
Statistics
Matches: 42, Mismatches: 5, Indels: 6
0.79 0.09 0.11
Matches are distributed among these distances:
4 7 0.17
5 30 0.71
6 5 0.12
ACGTcount: A:0.76, C:0.00, G:0.04, T:0.20
Consensus pattern (5 bp):
AATAA
Found at i:26666685 original size:26 final size:25
Alignment explanation
Indices: 26666641--26666723 Score: 81
Period size: 21 Copynumber: 3.5 Consensus size: 25
26666631 ACAGTAAAGA
*
26666641 TAAT-AAAGAAATAATAAGAATAATAG
1 TAATAAAATAAATAA-AAGAA-AATAG
26666667 TAATAAAATAAATAAAAGAAAA-AG
1 TAATAAAATAAATAAAAGAAAATAG
*
26666691 -AATAAAAT-AAT--AATAAAATA-
1 TAATAAAATAAATAAAAGAAAATAG
26666711 TAATAAAATAAAT
1 TAATAAAATAAAT
26666724 GGGGGAAAAT
Statistics
Matches: 51, Mismatches: 2, Indels: 12
0.78 0.03 0.18
Matches are distributed among these distances:
20 6 0.12
21 9 0.18
22 6 0.12
23 8 0.16
24 2 0.04
25 2 0.04
26 9 0.18
27 9 0.18
ACGTcount: A:0.71, C:0.00, G:0.06, T:0.23
Consensus pattern (25 bp):
TAATAAAATAAATAAAAGAAAATAG
Found at i:26684218 original size:56 final size:56
Alignment explanation
Indices: 26684150--26684263 Score: 147
Period size: 56 Copynumber: 2.0 Consensus size: 56
26684140 TGAAGAATCC
* *
26684150 TTATAATCAAGGATGGACTCAATCCTAAAGAAAGAAAGAGAGAAAATCTCAACAAA
1 TTATAATCAAGGATGGACTCAATCCTAAAGAAAGAAAGAAAGAAAACCTCAACAAA
* * ** * * *
26684206 TTATAATGAAGGATGGACTCCATTTTGAAGAAAGAAAGAAATAAAACCTCATCAAA
1 TTATAATCAAGGATGGACTCAATCCTAAAGAAAGAAAGAAAGAAAACCTCAACAAA
26684262 TT
1 TT
26684264 TGTTTCAATC
Statistics
Matches: 49, Mismatches: 9, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
56 49 1.00
ACGTcount: A:0.49, C:0.13, G:0.16, T:0.22
Consensus pattern (56 bp):
TTATAATCAAGGATGGACTCAATCCTAAAGAAAGAAAGAAAGAAAACCTCAACAAA
Found at i:26684717 original size:6 final size:6
Alignment explanation
Indices: 26684706--26684731 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
26684696 TCCCTCACTC
26684706 CAATTG CAATTG CAATTG CAATTG CA
1 CAATTG CAATTG CAATTG CAATTG CA
26684732 GGCCGTTGTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.35, C:0.19, G:0.15, T:0.31
Consensus pattern (6 bp):
CAATTG
Found at i:26687294 original size:5 final size:5
Alignment explanation
Indices: 26687284--26687310 Score: 54
Period size: 5 Copynumber: 5.4 Consensus size: 5
26687274 AAATTTATGA
26687284 AAAAT AAAAT AAAAT AAAAT AAAAT AA
1 AAAAT AAAAT AAAAT AAAAT AAAAT AA
26687311 CACACAAATT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 22 1.00
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (5 bp):
AAAAT
Found at i:26692001 original size:37 final size:37
Alignment explanation
Indices: 26691951--26692029 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
26691941 TTATTACGAA
* * *
26691951 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
26691988 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
26692025 GTCTT
1 GTCTT
26692030 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:26692226 original size:47 final size:47
Alignment explanation
Indices: 26692148--26692527 Score: 670
Period size: 47 Copynumber: 8.1 Consensus size: 47
26692138 CCCTTCGGGA
* * * * * *
26692148 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
26692195 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
26692242 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
26692289 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
26692336 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
26692383 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
26692430 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
26692477 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
26692524 CTTA
1 CTTA
26692528 CTATCATTTC
Statistics
Matches: 319, Mismatches: 14, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
47 319 1.00
ACGTcount: A:0.29, C:0.31, G:0.09, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:26694129 original size:96 final size:97
Alignment explanation
Indices: 26694027--26694220 Score: 372
Period size: 98 Copynumber: 2.0 Consensus size: 97
26694017 TGTTCATAGC
26694027 TCAACTAGCATCCATTTTCGATTTAACACAAAAATTC-AACCGAATGTTGTTTATCTTAAGCTAT
1 TCAACTAGCATCCATTTTCGATTTAACACAAAAATTCAAACCGAATGTTGTTTATCTTAAGCTAT
26694091 CATTATATTATCAAAATTGAATTAATTAAACT
66 CATTATATTATCAAAATTGAATTAATTAAACT
26694123 TCAACTAGCATCCATTTTCGATTTAACACAAAAATTCATAACCGAATGTTGTTTATCTTAAGCTA
1 TCAACTAGCATCCATTTTCGATTTAACACAAAAATTCA-AACCGAATGTTGTTTATCTTAAGCTA
26694188 TCATTATATTATCAAAATTGAATTAATTAAACT
65 TCATTATATTATCAAAATTGAATTAATTAAACT
26694221 CATATAAGCA
Statistics
Matches: 96, Mismatches: 0, Indels: 2
0.98 0.00 0.02
Matches are distributed among these distances:
96 37 0.39
98 59 0.61
ACGTcount: A:0.39, C:0.16, G:0.07, T:0.38
Consensus pattern (97 bp):
TCAACTAGCATCCATTTTCGATTTAACACAAAAATTCAAACCGAATGTTGTTTATCTTAAGCTAT
CATTATATTATCAAAATTGAATTAATTAAACT
Found at i:26699886 original size:123 final size:123
Alignment explanation
Indices: 26699667--26699911 Score: 463
Period size: 123 Copynumber: 2.0 Consensus size: 123
26699657 AAATGGTTAA
*
26699667 TTTTGAATACTTATAGATCAAGAAAAGAGGAATTCGGACTTGGACTGAAGGAAGTCGAAGATTAT
1 TTTTGAATACTTATAGATCAAGAAAAGAGGAATTCGGACTTAGACTGAAGGAAGTCGAAGATTAT
26699732 ATAGTAGATGATCCGAGTCGACAATTTCGAGTACAAGATAAGTTCGTACGTAAAACAT
66 ATAGTAGATGATCCGAGTCGACAATTTCGAGTACAAGATAAGTTCGTACGTAAAACAT
*
26699790 TTTTGAATACTTATAGATCAAGAAAAGAGGAATTTGGACTTAGACTGAAGGAAGTCGAAGATTAT
1 TTTTGAATACTTATAGATCAAGAAAAGAGGAATTCGGACTTAGACTGAAGGAAGTCGAAGATTAT
*
26699855 ATAGTAGATGATCCGAGTCGACAATTTCGAGTACAAGATAAGTTCGTATGTAAAACA
66 ATAGTAGATGATCCGAGTCGACAATTTCGAGTACAAGATAAGTTCGTACGTAAAACA
26699912 AGATGTTATA
Statistics
Matches: 119, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
123 119 1.00
ACGTcount: A:0.39, C:0.11, G:0.22, T:0.27
Consensus pattern (123 bp):
TTTTGAATACTTATAGATCAAGAAAAGAGGAATTCGGACTTAGACTGAAGGAAGTCGAAGATTAT
ATAGTAGATGATCCGAGTCGACAATTTCGAGTACAAGATAAGTTCGTACGTAAAACAT
Found at i:26700658 original size:200 final size:200
Alignment explanation
Indices: 26700315--26700715 Score: 802
Period size: 200 Copynumber: 2.0 Consensus size: 200
26700305 ATGATGTTGG
26700315 CTTGAAATTGATAGATGAGTTGAGAATTTATAAGTACTTATGTGTTGGTGTTTCATATTTTATAT
1 CTTGAAATTGATAGATGAGTTGAGAATTTATAAGTACTTATGTGTTGGTGTTTCATATTTTATAT
26700380 ACTGTTGATGATTTTGGTACGAACTTACTAAGCTTTTGAAAGCTTACTTTGTGTGTGTGTTTGTA
66 ACTGTTGATGATTTTGGTACGAACTTACTAAGCTTTTGAAAGCTTACTTTGTGTGTGTGTTTGTA
26700445 TTGTTTTATAGATATTGAAGCTACTGTGAGCTTGAGGATCGTCAAGGATCATCACCACACTACCA
131 TTGTTTTATAGATATTGAAGCTACTGTGAGCTTGAGGATCGTCAAGGATCATCACCACACTACCA
26700510 AACCT
196 AACCT
26700515 CTTGAAATTGATAGATGAGTTGAGAATTTATAAGTACTTATGTGTTGGTGTTTCATATTTTATAT
1 CTTGAAATTGATAGATGAGTTGAGAATTTATAAGTACTTATGTGTTGGTGTTTCATATTTTATAT
26700580 ACTGTTGATGATTTTGGTACGAACTTACTAAGCTTTTGAAAGCTTACTTTGTGTGTGTGTTTGTA
66 ACTGTTGATGATTTTGGTACGAACTTACTAAGCTTTTGAAAGCTTACTTTGTGTGTGTGTTTGTA
26700645 TTGTTTTATAGATATTGAAGCTACTGTGAGCTTGAGGATCGTCAAGGATCATCACCACACTACCA
131 TTGTTTTATAGATATTGAAGCTACTGTGAGCTTGAGGATCGTCAAGGATCATCACCACACTACCA
26700710 AACCT
196 AACCT
26700715 C
1 C
26700716 ATTTTGGTAC
Statistics
Matches: 201, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
200 201 1.00
ACGTcount: A:0.27, C:0.13, G:0.20, T:0.40
Consensus pattern (200 bp):
CTTGAAATTGATAGATGAGTTGAGAATTTATAAGTACTTATGTGTTGGTGTTTCATATTTTATAT
ACTGTTGATGATTTTGGTACGAACTTACTAAGCTTTTGAAAGCTTACTTTGTGTGTGTGTTTGTA
TTGTTTTATAGATATTGAAGCTACTGTGAGCTTGAGGATCGTCAAGGATCATCACCACACTACCA
AACCT
Found at i:26704385 original size:40 final size:40
Alignment explanation
Indices: 26704341--26704619 Score: 477
Period size: 40 Copynumber: 7.0 Consensus size: 40
26704331 GAATGCACAT
* * *
26704341 CACCAGCATGATTGCTCTTCGGGACCTAGCCCGGATATAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
* *
26704381 CACCAGCACGAATGCTCTTCAGGACTTAGCCCGGATATAT
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
26704421 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
* *
26704461 CACCAGCATGAATGCTCTTCGGGACTTAGCCTGGATATAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
26704501 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
*
26704541 CACCAGCACGAATGCTCTTCGGGACTTATCCCGGATATAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
*
26704581 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGCTATA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATA
26704620 TAACTCTCAA
Statistics
Matches: 225, Mismatches: 14, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
40 225 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.22
Consensus pattern (40 bp):
CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
Found at i:26705954 original size:37 final size:37
Alignment explanation
Indices: 26705896--26706035 Score: 219
Period size: 37 Copynumber: 3.8 Consensus size: 37
26705886 CGAATAGTCC
* * *
26705896 CCACACGTAGTTATCGGGTCTTACCCGGACAAAATCT
1 CCACACGTAGTCATCGAGTCTTACCCGGACATAATCT
26705933 CCACACGTAGTCATCGAGTCTTACCCGGACATAATCT
1 CCACACGTAGTCATCGAGTCTTACCCGGACATAATCT
*
26705970 CCACACGTAGTCATCGGGTCTTACCCGGACATAATCT
1 CCACACGTAGTCATCGAGTCTTACCCGGACATAATCT
*
26706007 CCACATGTAGTCATC-AGGTCTTACCCGGA
1 CCACACGTAGTCATCGA-GTCTTACCCGGA
26706036 ATATATTTCC
Statistics
Matches: 96, Mismatches: 6, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
37 96 1.00
ACGTcount: A:0.26, C:0.31, G:0.19, T:0.24
Consensus pattern (37 bp):
CCACACGTAGTCATCGAGTCTTACCCGGACATAATCT
Found at i:26706239 original size:48 final size:48
Alignment explanation
Indices: 26706176--26706849 Score: 1091
Period size: 48 Copynumber: 14.0 Consensus size: 48
26706166 ATATACACAC
* * *
26706176 ATCTCCTACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATATATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
* *
26706224 ATCTAAT-TCATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATAT-ATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
*
26706272 ATCTTATATATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATATATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
* * *
26706320 ATCTAAT-TCATATCTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATAT-ATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
* * *
26706368 ATCTCATACATATTTCACATTAGCCTTTCGGTTTTACCACATATACAT
1 ATCTCATATATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
26706416 ATCTCATATATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATATATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
* * *
26706464 ATCTCATACATATTTCACATTAGCCTTTCGGTTTTACCACATATACAT
1 ATCTCATATATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
26706512 ATCTCATATATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATATATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
* * * *
26706560 ATCTTATACATATTTCACACTAGCCATTCGGCTTCACCACATATACAT
1 ATCTCATATATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
* *
26706608 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATGCAT
1 ATCTCATATATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
26706656 ATCTCATATATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATATATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
*
26706704 ATCTCATATATATTTCACATTAGCCATTCGGCTTTACCACATATATAT
1 ATCTCATATATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
*
26706752 ATCTCATATATATTTCACATTAGCCATTCAGCTTTACCACATATACAT
1 ATCTCATATATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
* *
26706800 ATCTCATATATATTTCACATTAGCCATTCGGCTTTACCACACATATAT
1 ATCTCATATATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
26706848 AT
1 AT
26706850 ATTTATCCTG
Statistics
Matches: 583, Mismatches: 39, Indels: 8
0.93 0.06 0.01
Matches are distributed among these distances:
47 1 0.00
48 581 1.00
49 1 0.00
ACGTcount: A:0.31, C:0.26, G:0.06, T:0.37
Consensus pattern (48 bp):
ATCTCATATATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
Found at i:26709156 original size:77 final size:77
Alignment explanation
Indices: 26709063--26709214 Score: 223
Period size: 77 Copynumber: 2.0 Consensus size: 77
26709053 TAGCTTAAGT
* * * * *
26709063 GTCTAATGCGAGAGGATTTAAAAGAAAATTAGACCCAAAATTTATTTGGGCTGGATGGCAAGGGC
1 GTCTAATGAGAAAGGATATAAAAGAAAATTAGACCCAAAAGTTATTTGGGCTGGACGGCAAGGGC
26709128 ATGAAATCAGTA
66 ATGAAATCAGTA
** *
26709140 GTCTAATGAGAAAGGATATAAAAGGCAATTAGACCCAAAAGTTATTTGGGCTGGACGGCAAGGGT
1 GTCTAATGAGAAAGGATATAAAAGAAAATTAGACCCAAAAGTTATTTGGGCTGGACGGCAAGGGC
*
26709205 ATGTAATCAG
66 ATGAAATCAG
26709215 CAGAAAAATT
Statistics
Matches: 66, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
77 66 1.00
ACGTcount: A:0.38, C:0.12, G:0.27, T:0.24
Consensus pattern (77 bp):
GTCTAATGAGAAAGGATATAAAAGAAAATTAGACCCAAAAGTTATTTGGGCTGGACGGCAAGGGC
ATGAAATCAGTA
Found at i:26712682 original size:5 final size:6
Alignment explanation
Indices: 26712661--26712698 Score: 51
Period size: 6 Copynumber: 6.5 Consensus size: 6
26712651 CAATAAACAT
* *
26712661 AAAAAG AAAAAT TAAAAG -AAAAG AAAAAG AAAAAG AAA
1 AAAAAG AAAAAG AAAAAG AAAAAG AAAAAG AAAAAG AAA
26712699 TCTAAAGACA
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
5 5 0.18
6 23 0.82
ACGTcount: A:0.82, C:0.00, G:0.13, T:0.05
Consensus pattern (6 bp):
AAAAAG
Found at i:26712684 original size:17 final size:17
Alignment explanation
Indices: 26712662--26712698 Score: 56
Period size: 17 Copynumber: 2.2 Consensus size: 17
26712652 AATAAACATA
**
26712662 AAAAGAAAAATTAAAAG
1 AAAAGAAAAAGAAAAAG
26712679 AAAAGAAAAAGAAAAAG
1 AAAAGAAAAAGAAAAAG
26712696 AAA
1 AAA
26712699 TCTAAAGACA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.81, C:0.00, G:0.14, T:0.05
Consensus pattern (17 bp):
AAAAGAAAAAGAAAAAG
Found at i:26714298 original size:5 final size:5
Alignment explanation
Indices: 26714288--26714342 Score: 60
Period size: 5 Copynumber: 11.2 Consensus size: 5
26714278 GAATAATAGT
* * *
26714288 AATAA AAT-A AATAA AAGAA AA-AG AATAA AATAA TAATAA AATAT AATAA
1 AATAA AATAA AATAA AATAA AATAA AATAA AATAA -AATAA AATAA AATAA
26714337 AATAA A
1 AATAA A
26714343 TAGGGGAAAA
Statistics
Matches: 42, Mismatches: 5, Indels: 6
0.79 0.09 0.11
Matches are distributed among these distances:
4 7 0.17
5 30 0.71
6 5 0.12
ACGTcount: A:0.76, C:0.00, G:0.04, T:0.20
Consensus pattern (5 bp):
AATAA
Found at i:26714305 original size:26 final size:25
Alignment explanation
Indices: 26714261--26714344 Score: 83
Period size: 21 Copynumber: 3.6 Consensus size: 25
26714251 ACAGTAAAGA
*
26714261 TAAT-AAAGAAATAATAAGAATAATAG
1 TAATAAAATAAATAA-AAGAA-AATAG
26714287 TAATAAAATAAATAAAAGAAAA-AG
1 TAATAAAATAAATAAAAGAAAATAG
*
26714311 -AATAAAAT-AAT--AATAAAATA-
1 TAATAAAATAAATAAAAGAAAATAG
26714331 TAATAAAATAAATA
1 TAATAAAATAAATA
26714345 GGGGAAAATG
Statistics
Matches: 51, Mismatches: 2, Indels: 13
0.77 0.03 0.20
Matches are distributed among these distances:
20 6 0.12
21 9 0.18
22 6 0.12
23 8 0.16
24 2 0.04
25 2 0.04
26 9 0.18
27 9 0.18
ACGTcount: A:0.71, C:0.00, G:0.06, T:0.23
Consensus pattern (25 bp):
TAATAAAATAAATAAAAGAAAATAG
Found at i:26714621 original size:69 final size:68
Alignment explanation
Indices: 26714510--26714646 Score: 265
Period size: 69 Copynumber: 2.0 Consensus size: 68
26714500 GGTGGGTGGC
26714510 TGGTTAAGAAAGAGGGTGAAAGTGAGGGACGCGCAAGGTGGCTGAGGGGTTCCGCCTGCGTCACA
1 TGGTTAAGAAAGAGGGTGAAAGTGAGGGACGCGCAAGGTGGCTGAGGGGTTCCGCCTGCGTCACA
26714575 AGG
66 AGG
26714578 NTGGTTAAGAAAGAGGGTGAAAGTGAGGGACGCGCAAGGTGGCTGAGGGGTTCCGCCTGCGTCAC
1 -TGGTTAAGAAAGAGGGTGAAAGTGAGGGACGCGCAAGGTGGCTGAGGGGTTCCGCCTGCGTCAC
26714643 AAGG
65 AAGG
26714647 AGGGTAGGTT
Statistics
Matches: 68, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
69 68 1.00
ACGTcount: A:0.25, C:0.16, G:0.42, T:0.16
Consensus pattern (68 bp):
TGGTTAAGAAAGAGGGTGAAAGTGAGGGACGCGCAAGGTGGCTGAGGGGTTCCGCCTGCGTCACA
AGG
Found at i:26716233 original size:44 final size:41
Alignment explanation
Indices: 26716162--26716267 Score: 104
Period size: 44 Copynumber: 2.5 Consensus size: 41
26716152 TGTGTTTTCA
** * * * *
26716162 TGTAAGACCACATCTAGGACGTTGGCATCCACTTATGATTTATG
1 TGTAAGACCATGTCTAGGACATCGGCAT-CA-TTATGATCT-CG
* *
26716206 TGTAAGACCATGTCTGGGACATCGGCATCATTTTGATCTCG
1 TGTAAGACCATGTCTAGGACATCGGCATCATTATGATCTCG
*
26716247 TGTAAGACCCTGTCTAGGACA
1 TGTAAGACCATGTCTAGGACA
26716268 GTGGCATTGA
Statistics
Matches: 52, Mismatches: 10, Indels: 3
0.80 0.15 0.05
Matches are distributed among these distances:
41 20 0.38
42 7 0.13
43 2 0.04
44 23 0.44
ACGTcount: A:0.25, C:0.22, G:0.23, T:0.30
Consensus pattern (41 bp):
TGTAAGACCATGTCTAGGACATCGGCATCATTATGATCTCG
Found at i:26725315 original size:57 final size:57
Alignment explanation
Indices: 26725238--26725349 Score: 188
Period size: 57 Copynumber: 2.0 Consensus size: 57
26725228 CATTTGACGA
*
26725238 ATTTGATGATATTTTAGGTATGGACTGGTTGACATTGCATGATGCCATAGTAAATTG
1 ATTTGATGATATTTTAGGTATGGACTGGTTGACATTACATGATGCCATAGTAAATTG
* * *
26725295 ATTTGATGTTATTTTGGGTATGGATTGGTTGACATTACATGATGCCATAGTAAAT
1 ATTTGATGATATTTTAGGTATGGACTGGTTGACATTACATGATGCCATAGTAAAT
26725350 CGTAGATAGA
Statistics
Matches: 51, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
57 51 1.00
ACGTcount: A:0.28, C:0.08, G:0.24, T:0.40
Consensus pattern (57 bp):
ATTTGATGATATTTTAGGTATGGACTGGTTGACATTACATGATGCCATAGTAAATTG
Found at i:26729957 original size:119 final size:119
Alignment explanation
Indices: 26729746--26729984 Score: 460
Period size: 119 Copynumber: 2.0 Consensus size: 119
26729736 TTGTGTGAGT
26729746 AGGCCCGTGAATAGCTCGAAAACGAGTCCATATGTATTATGAGATATGAGGTAGCTTCGGCTACA
1 AGGCCCGTGAATAGCTCGAAAACGAGTCCATATGTATTATGAGATATGAGGTAGCTTCGGCTACA
26729811 TATATGACATTTGTGTGCAAGATTTTCGAGTATCCATTAATATTCCGAGTGTTC
66 TATATGACATTTGTGTGCAAGATTTTCGAGTATCCATTAATATTCCGAGTGTTC
*
26729865 AGGCCCGTGAATAGCTCGAAAACGAGTCCATATGTATTATGAGATATGAGGTAGCTTTGGCTACA
1 AGGCCCGTGAATAGCTCGAAAACGAGTCCATATGTATTATGAGATATGAGGTAGCTTCGGCTACA
*
26729930 TATATGACTTTTGTGTGCAAGATTTTCGAGTATCCATTAATATTCCGAGTGTTC
66 TATATGACATTTGTGTGCAAGATTTTCGAGTATCCATTAATATTCCGAGTGTTC
26729984 A
1 A
26729985 ATGGGAATGT
Statistics
Matches: 118, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
119 118 1.00
ACGTcount: A:0.28, C:0.16, G:0.23, T:0.33
Consensus pattern (119 bp):
AGGCCCGTGAATAGCTCGAAAACGAGTCCATATGTATTATGAGATATGAGGTAGCTTCGGCTACA
TATATGACATTTGTGTGCAAGATTTTCGAGTATCCATTAATATTCCGAGTGTTC
Found at i:26731112 original size:61 final size:61
Alignment explanation
Indices: 26731017--26731137 Score: 233
Period size: 61 Copynumber: 2.0 Consensus size: 61
26731007 CCATAAGGGC
*
26731017 GTGTGATCCCTGTTTCGTGAAAAATTTTCTAAGTTTTTGTAAAATTTTCTAAATTTCTCGT
1 GTGTGATCCCTGTTTAGTGAAAAATTTTCTAAGTTTTTGTAAAATTTTCTAAATTTCTCGT
26731078 GTGTGATCCCTGTTTAGTGAAAAATTTTCTAAGTTTTTGTAAAATTTTCTAAATTTCTCG
1 GTGTGATCCCTGTTTAGTGAAAAATTTTCTAAGTTTTTGTAAAATTTTCTAAATTTCTCG
26731138 GTTTAGTCTC
Statistics
Matches: 59, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
61 59 1.00
ACGTcount: A:0.26, C:0.12, G:0.15, T:0.47
Consensus pattern (61 bp):
GTGTGATCCCTGTTTAGTGAAAAATTTTCTAAGTTTTTGTAAAATTTTCTAAATTTCTCGT
Found at i:26732174 original size:56 final size:56
Alignment explanation
Indices: 26732087--26732200 Score: 147
Period size: 56 Copynumber: 2.0 Consensus size: 56
26732077 TGAAGAATCC
* *
26732087 TTATAATCAAGGATGGACTCAATCCTAAAGAAAGAAAGAGAGAAAATCTCAACAAA
1 TTATAATCAAGGATGGACTCAATCCTAAAGAAAGAAAGAAAGAAAACCTCAACAAA
* * ** * * *
26732143 TTATAATGAAGGATGGACTCCATTTTGAAGAAAGAAAGAAATAAAACCTCATCAAA
1 TTATAATCAAGGATGGACTCAATCCTAAAGAAAGAAAGAAAGAAAACCTCAACAAA
26732199 TT
1 TT
26732201 TGTTTCAATC
Statistics
Matches: 49, Mismatches: 9, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
56 49 1.00
ACGTcount: A:0.49, C:0.13, G:0.16, T:0.22
Consensus pattern (56 bp):
TTATAATCAAGGATGGACTCAATCCTAAAGAAAGAAAGAAAGAAAACCTCAACAAA
Found at i:26732654 original size:6 final size:6
Alignment explanation
Indices: 26732643--26732668 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
26732633 TCCCTCACTC
26732643 CAATTG CAATTG CAATTG CAATTG CA
1 CAATTG CAATTG CAATTG CAATTG CA
26732669 GGCCGTTGTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.35, C:0.19, G:0.15, T:0.31
Consensus pattern (6 bp):
CAATTG
Found at i:26735230 original size:5 final size:5
Alignment explanation
Indices: 26735220--26735246 Score: 54
Period size: 5 Copynumber: 5.4 Consensus size: 5
26735210 AAATTTATGA
26735220 AAAAT AAAAT AAAAT AAAAT AAAAT AA
1 AAAAT AAAAT AAAAT AAAAT AAAAT AA
26735247 CACACAAATT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 22 1.00
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (5 bp):
AAAAT
Found at i:26737556 original size:102 final size:102
Alignment explanation
Indices: 26737380--26737571 Score: 375
Period size: 102 Copynumber: 1.9 Consensus size: 102
26737370 GTCGACTCTG
*
26737380 TATTAATCTGATGCTCCACCTGCTTTTGATTTTCTTTATTGGAAGAGTCTTTAAGAGATAATTTA
1 TATTAATCTGATGCTCCACCTGCTTTTGATTTTCTTTATTGGAAGAGTCTTTAAGAGATAAGTTA
26737445 GGTAGCATAGCAGTTTCATCAAAAACAACATCTTTGC
66 GGTAGCATAGCAGTTTCATCAAAAACAACATCTTTGC
26737482 TATTAATCTGATGCTCCACCTGCTTTTGATTTTCTTTATTGGAAGAGTCTTTAAGAGATAAGTTA
1 TATTAATCTGATGCTCCACCTGCTTTTGATTTTCTTTATTGGAAGAGTCTTTAAGAGATAAGTTA
26737547 GGTAGCATAGCAGTTTCATCAAAAA
66 GGTAGCATAGCAGTTTCATCAAAAA
26737572 TCATAGCAGT
Statistics
Matches: 89, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
102 89 1.00
ACGTcount: A:0.30, C:0.16, G:0.17, T:0.38
Consensus pattern (102 bp):
TATTAATCTGATGCTCCACCTGCTTTTGATTTTCTTTATTGGAAGAGTCTTTAAGAGATAAGTTA
GGTAGCATAGCAGTTTCATCAAAAACAACATCTTTGC
Found at i:26737578 original size:21 final size:21
Alignment explanation
Indices: 26737552--26737592 Score: 82
Period size: 21 Copynumber: 2.0 Consensus size: 21
26737542 AGTTAGGTAG
26737552 CATAGCAGTTTCATCAAAAAT
1 CATAGCAGTTTCATCAAAAAT
26737573 CATAGCAGTTTCATCAAAAA
1 CATAGCAGTTTCATCAAAAA
26737593 CAACATCTTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.44, C:0.20, G:0.10, T:0.27
Consensus pattern (21 bp):
CATAGCAGTTTCATCAAAAAT
Found at i:26740337 original size:46 final size:46
Alignment explanation
Indices: 26740284--26740374 Score: 128
Period size: 46 Copynumber: 2.0 Consensus size: 46
26740274 TATATATACA
* *
26740284 CATCTCATACATATCTCACATTAGCCATTTGGCTTTACCACATATC
1 CATCTCATACACATCTCACATTAGCCATTCGGCTTTACCACATATC
* * * *
26740330 CATCTCATACACATTTCGCATTATCCATTCGGCTTTCCCACATAT
1 CATCTCATACACATCTCACATTAGCCATTCGGCTTTACCACATAT
26740375 ATACACATCC
Statistics
Matches: 39, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
46 39 1.00
ACGTcount: A:0.26, C:0.32, G:0.07, T:0.35
Consensus pattern (46 bp):
CATCTCATACACATCTCACATTAGCCATTCGGCTTTACCACATATC
Found at i:26740415 original size:22 final size:22
Alignment explanation
Indices: 26740389--26740466 Score: 63
Period size: 22 Copynumber: 3.4 Consensus size: 22
26740379 ACATCCACAT
26740389 TTATCACATTGGCCATTCTGCC
1 TTATCACATTGGCCATTCTGCC
*
26740411 TTATCACATGTATG-CATGT-T-CAC
1 TTATCACAT-T-GGCCAT-TCTGC-C
*
26740434 ATTTATCACATTGGCCATTCGGCC
1 --TTATCACATTGGCCATTCTGCC
26740458 TTATCACAT
1 TTATCACAT
26740467 ATATGCATGT
Statistics
Matches: 44, Mismatches: 3, Indels: 18
0.68 0.05 0.28
Matches are distributed among these distances:
22 19 0.43
23 8 0.18
24 7 0.16
25 10 0.23
ACGTcount: A:0.23, C:0.27, G:0.13, T:0.37
Consensus pattern (22 bp):
TTATCACATTGGCCATTCTGCC
Found at i:26740697 original size:47 final size:47
Alignment explanation
Indices: 26740384--26740695 Score: 435
Period size: 47 Copynumber: 6.6 Consensus size: 47
26740374 TATACACATC
* * ***
26740384 CACATTTATCACATTGGCCATTCTGCCTTATCACATGTATGCATGTT
1 CACATTCATCACATTGGCCATTCGGCCTTATCACACAAATGCATGTT
* * *
26740431 CACATTTATCACATTGGCCATTCGGCCTTATCACATATATGCATGTT
1 CACATTCATCACATTGGCCATTCGGCCTTATCACACAAATGCATGTT
* * *
26740478 CATATTCTTCACATTGGCCATTCGGCCTTATCACACATATGCATGTT
1 CACATTCATCACATTGGCCATTCGGCCTTATCACACAAATGCATGTT
*
26740525 CACATTCATCACATTGGCCATTCGGTCTTATCACACAAATGCATGTT
1 CACATTCATCACATTGGCCATTCGGCCTTATCACACAAATGCATGTT
** * * *
26740572 CACATTCATCACATTTTCCATTCGGTCTTAGCACACAAATACATGTT
1 CACATTCATCACATTGGCCATTCGGCCTTATCACACAAATGCATGTT
* *
26740619 CACATTCATCACATTTGCCATTCGGCCTTAGCACACAAATGCATGTT
1 CACATTCATCACATTGGCCATTCGGCCTTATCACACAAATGCATGTT
**
26740666 CACATTCATCACATTTTCCATTCGGCCTTA
1 CACATTCATCACATTGGCCATTCGGCCTTA
26740696 GCTCATGTAT
Statistics
Matches: 247, Mismatches: 18, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
47 247 1.00
ACGTcount: A:0.26, C:0.28, G:0.12, T:0.35
Consensus pattern (47 bp):
CACATTCATCACATTGGCCATTCGGCCTTATCACACAAATGCATGTT
Found at i:26748757 original size:45 final size:45
Alignment explanation
Indices: 26748708--26748797 Score: 171
Period size: 45 Copynumber: 2.0 Consensus size: 45
26748698 GCCATCGATG
*
26748708 AAACTATGAGCTTTGTGATGTTAGTTGATGAATTATGAAAGATAT
1 AAACTATGAGCTTTGTGACGTTAGTTGATGAATTATGAAAGATAT
26748753 AAACTATGAGCTTTGTGACGTTAGTTGATGAATTATGAAAGATAT
1 AAACTATGAGCTTTGTGACGTTAGTTGATGAATTATGAAAGATAT
26748798 GTTTTGGGTT
Statistics
Matches: 44, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
45 44 1.00
ACGTcount: A:0.36, C:0.06, G:0.22, T:0.37
Consensus pattern (45 bp):
AAACTATGAGCTTTGTGACGTTAGTTGATGAATTATGAAAGATAT
Found at i:26751203 original size:37 final size:37
Alignment explanation
Indices: 26751148--26751250 Score: 161
Period size: 37 Copynumber: 2.8 Consensus size: 37
26751138 CGAATAGTCC
* *
26751148 CCACGCGTAGTTATCGGGTCTTACCCGGACAAAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
*
26751185 CCACACGTAGTCATCGGGTCTTACCCGGACATAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
* *
26751222 CCACATGTAGTCATCAGGTCTTACCCGGA
1 CCACACGTAGTCATCGGGTCTTACCCGGA
26751251 ATATATTTCC
Statistics
Matches: 61, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
37 61 1.00
ACGTcount: A:0.24, C:0.31, G:0.20, T:0.24
Consensus pattern (37 bp):
CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
Found at i:26751449 original size:48 final size:48
Alignment explanation
Indices: 26751391--26752304 Score: 1783
Period size: 48 Copynumber: 19.0 Consensus size: 48
26751381 ATATACACAC
* *
26751391 ATCTCCTACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
26751439 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
26751487 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
26751535 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
26751583 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
26751631 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
26751679 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
26751727 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
26751775 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
26751823 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
26751871 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
26751919 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
26751967 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
26752015 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
26752063 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
26752111 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
26752159 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
26752207 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
* * *
26752255 ATCTCATATATATTTCACATTAGCCATTCGGCTTTACCACACATATAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
26752303 AT
1 AT
26752305 ATTTATCTTG
Statistics
Matches: 861, Mismatches: 5, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
48 861 1.00
ACGTcount: A:0.31, C:0.27, G:0.06, T:0.35
Consensus pattern (48 bp):
ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
Found at i:26760917 original size:51 final size:50
Alignment explanation
Indices: 26760841--26760940 Score: 173
Period size: 51 Copynumber: 2.0 Consensus size: 50
26760831 CCCTAGTAGC
26760841 CAAAGGGGCCTTCACATAGTACCACACTTGTGTCCAAAGCTATTTTATTCA
1 CAAAGGGGCCTTCACATAGTACCACACTTGTGTCC-AAGCTATTTTATTCA
* *
26760892 CAAAGTGGCCTTCACATAGTACCACACTTGTGTCCAAGGTATTTTATTC
1 CAAAGGGGCCTTCACATAGTACCACACTTGTGTCCAAGCTATTTTATTC
26760941 CTAAGGTTCA
Statistics
Matches: 47, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
50 13 0.28
51 34 0.72
ACGTcount: A:0.28, C:0.25, G:0.16, T:0.31
Consensus pattern (50 bp):
CAAAGGGGCCTTCACATAGTACCACACTTGTGTCCAAGCTATTTTATTCA
Found at i:26761001 original size:28 final size:28
Alignment explanation
Indices: 26760964--26761058 Score: 126
Period size: 28 Copynumber: 3.5 Consensus size: 28
26760954 GAGAAATTTC
26760964 TCACTTAGCACAATGCCATGGACTTATT
1 TCACTTAGCACAATGCCATGGACTTATT
* *
26760992 TCACTTAGCACATTGCCATTGACTTATT
1 TCACTTAGCACAATGCCATGGACTTATT
* *
26761020 TCACTTAG----ATGCGATGGTCTTATT
1 TCACTTAGCACAATGCCATGGACTTATT
26761044 TCACTTAGCACAATG
1 TCACTTAGCACAATG
26761059 TCATATCCTA
Statistics
Matches: 57, Mismatches: 6, Indels: 8
0.80 0.08 0.11
Matches are distributed among these distances:
24 20 0.35
28 37 0.65
ACGTcount: A:0.26, C:0.23, G:0.15, T:0.36
Consensus pattern (28 bp):
TCACTTAGCACAATGCCATGGACTTATT
Found at i:26762718 original size:53 final size:53
Alignment explanation
Indices: 26762650--26762754 Score: 156
Period size: 53 Copynumber: 2.0 Consensus size: 53
26762640 TTCCTTTTTA
* * * *
26762650 AACTTACCATTGCCATGTCTTGACATGGTCTTACGTGGTATCCTTGCCTTATG
1 AACTCACCATTGCCATGCCTTGACATGGTCTTACATGGGATCCTTGCCTTATG
* *
26762703 AACTCACCATTGCCATGCCTTGGCATGGTCTTACATGGGATCTTTGCCTTAT
1 AACTCACCATTGCCATGCCTTGACATGGTCTTACATGGGATCCTTGCCTTAT
26762755 AGTAGTTTAT
Statistics
Matches: 46, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
53 46 1.00
ACGTcount: A:0.19, C:0.26, G:0.19, T:0.36
Consensus pattern (53 bp):
AACTCACCATTGCCATGCCTTGACATGGTCTTACATGGGATCCTTGCCTTATG
Found at i:26780185 original size:51 final size:51
Alignment explanation
Indices: 26780109--26780209 Score: 175
Period size: 51 Copynumber: 2.0 Consensus size: 51
26780099 CCTTTGTAGC
* * *
26780109 CAAAGTGGCCTTCACATAGTACCACACTTGTGTCCAAAGCTATTTTATTCA
1 CAAAGTGGCCTTCACATAGTACCACACTCGTGTCCAAACCTATATTATTCA
26780160 CAAAGTGGCCTTCACATAGTACCACACTCGTGTCCAAACCTATATTATTC
1 CAAAGTGGCCTTCACATAGTACCACACTCGTGTCCAAACCTATATTATTC
26780210 CTAAGGTTCA
Statistics
Matches: 47, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
51 47 1.00
ACGTcount: A:0.30, C:0.28, G:0.13, T:0.30
Consensus pattern (51 bp):
CAAAGTGGCCTTCACATAGTACCACACTCGTGTCCAAACCTATATTATTCA
Found at i:26780290 original size:52 final size:52
Alignment explanation
Indices: 26780233--26780351 Score: 211
Period size: 52 Copynumber: 2.3 Consensus size: 52
26780223 AAAAAATTTC
26780233 TCACTTAGCACAATGCCATGGACTTATTTCACTTAGATGCCATGGACTTATT
1 TCACTTAGCACAATGCCATGGACTTATTTCACTTAGATGCCATGGACTTATT
* *
26780285 TCACTTAGCACATTGCCATGGACTTATTTCACTTAGATGCCATGGTCTTATT
1 TCACTTAGCACAATGCCATGGACTTATTTCACTTAGATGCCATGGACTTATT
*
26780337 TCACTTAACACAATG
1 TCACTTAGCACAATG
26780352 TCATATCCTA
Statistics
Matches: 63, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
52 63 1.00
ACGTcount: A:0.27, C:0.24, G:0.14, T:0.35
Consensus pattern (52 bp):
TCACTTAGCACAATGCCATGGACTTATTTCACTTAGATGCCATGGACTTATT
Found at i:26780310 original size:28 final size:27
Alignment explanation
Indices: 26780233--26780348 Score: 154
Period size: 24 Copynumber: 4.4 Consensus size: 27
26780223 AAAAAATTTC
26780233 TCACTTAGCACAATGCCATGGACTTATT
1 TCACTTAGCAC-ATGCCATGGACTTATT
26780261 TCACTTAG---ATGCCATGGACTTATT
1 TCACTTAGCACATGCCATGGACTTATT
26780285 TCACTTAGCACATTGCCATGGACTTATT
1 TCACTTAGCACA-TGCCATGGACTTATT
*
26780313 TCACTTAG---ATGCCATGGTCTTATT
1 TCACTTAGCACATGCCATGGACTTATT
*
26780337 TCACTTAACACA
1 TCACTTAGCACA
26780349 ATGTCATATC
Statistics
Matches: 79, Mismatches: 2, Indels: 15
0.82 0.02 0.16
Matches are distributed among these distances:
24 45 0.57
25 1 0.01
27 2 0.03
28 31 0.39
ACGTcount: A:0.27, C:0.24, G:0.14, T:0.35
Consensus pattern (27 bp):
TCACTTAGCACATGCCATGGACTTATT
Found at i:26783544 original size:64 final size:66
Alignment explanation
Indices: 26783463--26783618 Score: 176
Period size: 67 Copynumber: 2.4 Consensus size: 66
26783453 AGACATTATG
* * * *
26783463 ATGTAGCTAGGTCGCATGGGTGAG-ACTA-TG-TGTACACCATGTAGACAAGAGAGCTACGGGAT
1 ATGTAGCTAGGTCGCATGGGTG-GTACCAGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
*
26783525 AT
65 AA
* * *
26783527 ATGTAGCTAGGTTGCATGCGTGGTTCCAGGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGTGGTACCA-GTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
26783592 AA
65 AA
* *
26783594 AT-TGGCTAGGTCACATGGGTGGTAC
1 ATGTAGCTAGGTCGCATGGGTGGTAC
26783619 TGAGTGTTCA
Statistics
Matches: 75, Mismatches: 13, Indels: 6
0.80 0.14 0.06
Matches are distributed among these distances:
63 1 0.01
64 22 0.29
66 20 0.27
67 32 0.43
ACGTcount: A:0.29, C:0.16, G:0.32, T:0.23
Consensus pattern (66 bp):
ATGTAGCTAGGTCGCATGGGTGGTACCAGTGAAGGACACCATGTAGACAAGAGAGCTACGAGATA
A
Found at i:26793454 original size:48 final size:48
Alignment explanation
Indices: 26793397--26793492 Score: 183
Period size: 48 Copynumber: 2.0 Consensus size: 48
26793387 TAAAAGGGTA
*
26793397 TTATATATGGCAGGGGTAAAAACCCTAAAAAGATAATATATAAATAAG
1 TTATATATGGCAAGGGTAAAAACCCTAAAAAGATAATATATAAATAAG
26793445 TTATATATGGCAAGGGTAAAAACCCTAAAAAGATAATATATAAATAAG
1 TTATATATGGCAAGGGTAAAAACCCTAAAAAGATAATATATAAATAAG
26793493 CCCGAAACTA
Statistics
Matches: 47, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
48 47 1.00
ACGTcount: A:0.51, C:0.08, G:0.16, T:0.25
Consensus pattern (48 bp):
TTATATATGGCAAGGGTAAAAACCCTAAAAAGATAATATATAAATAAG
Found at i:26796059 original size:28 final size:27
Alignment explanation
Indices: 26796003--26796054 Score: 70
Period size: 28 Copynumber: 1.9 Consensus size: 27
26795993 CATTTCATTT
* *
26796003 ATTTCACATTTTAGTCCCTCATTTACAA
1 ATTTCACAATTTAGTCCAT-ATTTACAA
26796031 ATTTCACAATTTAGTCCAT-TTTAC
1 ATTTCACAATTTAGTCCATATTTAC
26796055 TCAAAATCAT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 5 0.23
28 17 0.77
ACGTcount: A:0.29, C:0.23, G:0.04, T:0.44
Consensus pattern (27 bp):
ATTTCACAATTTAGTCCATATTTACAA
Found at i:26797687 original size:27 final size:27
Alignment explanation
Indices: 26797657--26797759 Score: 100
Period size: 27 Copynumber: 3.8 Consensus size: 27
26797647 TATTCTATTA
* *
26797657 AGTGGCTTTGCCACATTATCTGTTTCT
1 AGTGGCTATGCCACAATATCTGTTTCT
26797684 AGTGGCTATGCCACAAATATCTG-TTCT
1 AGTGGCTATGCCAC-AATATCTGTTTCT
* * * *
26797711 GGTGGCTCTACCACAATATCTGTATCT
1 AGTGGCTATGCCACAATATCTGTTTCT
* * * *
26797738 GGTGACTCTGTCACAATATCTG
1 AGTGGCTATGCCACAATATCTG
26797760 ATAACTGAGC
Statistics
Matches: 65, Mismatches: 9, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
26 8 0.12
27 50 0.77
28 7 0.11
ACGTcount: A:0.21, C:0.23, G:0.19, T:0.36
Consensus pattern (27 bp):
AGTGGCTATGCCACAATATCTGTTTCT
Found at i:26797717 original size:54 final size:53
Alignment explanation
Indices: 26797658--26797759 Score: 123
Period size: 54 Copynumber: 1.9 Consensus size: 53
26797648 ATTCTATTAA
* * * * *
26797658 GTGGCTTTGCCACATTATCTGTTTCTAGTGGCTATGCCACAAATATCTGTTCTG
1 GTGGCTCTACCACAATATCTGTATCTAGTGACTATGCCAC-AATATCTGTTCTG
* * *
26797712 GTGGCTCTACCACAATATCTGTATCTGGTGACTCTGTCACAATATCTG
1 GTGGCTCTACCACAATATCTGTATCTAGTGACTATGCCACAATATCTG
26797760 ATAACTGAGC
Statistics
Matches: 40, Mismatches: 8, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
53 8 0.20
54 32 0.80
ACGTcount: A:0.21, C:0.24, G:0.20, T:0.36
Consensus pattern (53 bp):
GTGGCTCTACCACAATATCTGTATCTAGTGACTATGCCACAATATCTGTTCTG
Found at i:26797934 original size:6 final size:6
Alignment explanation
Indices: 26797896--26798015 Score: 59
Period size: 6 Copynumber: 19.3 Consensus size: 6
26797886 TTGCATTCAC
* * *
26797896 ATTCTG ATTTTTG ATTCT- ATTACCTG ATACTG ATTCTG ATTTTG ATTCTG
1 ATTCTG A-TTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG
* * * * *
26797946 -TTACCTG ATACTG ATTCTG GTTCTA ATTCTG -TCACCTA ATTCTG ATTCTG
1 ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG AT--TCTG ATTCTG ATTCTG
*
26797996 ATTTTG ATTCT- AGTTCTG AT
1 ATTCTG ATTCTG A-TTCTG AT
26798016 AATGTTTCTT
Statistics
Matches: 84, Mismatches: 18, Indels: 24
0.67 0.14 0.19
Matches are distributed among these distances:
5 7 0.08
6 60 0.71
7 13 0.15
8 4 0.05
ACGTcount: A:0.20, C:0.17, G:0.14, T:0.49
Consensus pattern (6 bp):
ATTCTG
Found at i:26797942 original size:31 final size:31
Alignment explanation
Indices: 26797896--26798007 Score: 143
Period size: 31 Copynumber: 3.6 Consensus size: 31
26797886 TTGCATTCAC
26797896 ATTCTGATTTTTGATTCTATTACCTGATACTG
1 ATTCTGA-TTTTGATTCTATTACCTGATACTG
*
26797928 ATTCTGATTTTGATTCTGTTACCTGATACTG
1 ATTCTGATTTTGATTCTATTACCTGATACTG
* * * * * * *
26797959 ATTCTGGTTCTAATTCTGTCACCTAATTCTG
1 ATTCTGATTTTGATTCTATTACCTGATACTG
26797990 ATTCTGATTTTGATTCTA
1 ATTCTGATTTTGATTCTA
26798008 GTTCTGATAA
Statistics
Matches: 69, Mismatches: 11, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
31 62 0.90
32 7 0.10
ACGTcount: A:0.21, C:0.17, G:0.13, T:0.49
Consensus pattern (31 bp):
ATTCTGATTTTGATTCTATTACCTGATACTG
Found at i:26804061 original size:28 final size:28
Alignment explanation
Indices: 26804015--26804095 Score: 110
Period size: 28 Copynumber: 2.9 Consensus size: 28
26804005 ATGTCGTTGA
** *
26804015 ATACTCAATGCCTCACACACTAAGTTCC
1 ATACTCAATATCTCTCACACTAAGTTCC
26804043 ATACTCAATATCTCTCACACTAAGTTCC
1 ATACTCAATATCTCTCACACTAAGTTCC
*
26804071 ACACTCAATATCTCGT-ACACTAAGT
1 ATACTCAATATCTC-TCACACTAAGT
26804096 GTCGTACACA
Statistics
Matches: 48, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
28 47 0.98
29 1 0.02
ACGTcount: A:0.33, C:0.32, G:0.06, T:0.28
Consensus pattern (28 bp):
ATACTCAATATCTCTCACACTAAGTTCC
Found at i:26804133 original size:40 final size:40
Alignment explanation
Indices: 26804087--26804179 Score: 123
Period size: 40 Copynumber: 2.3 Consensus size: 40
26804077 AATATCTCGT
* *
26804087 ACACTAAGTGTCGTACACAGCCGAAGCTATCTCAAATCGC
1 ACACTAAGTGCCATACACAGCCGAAGCTATCTCAAATCGC
* * * * *
26804127 AGACTAAGTGCCATATATAGCCGAAGCTATGTCGAATCGC
1 ACACTAAGTGCCATACACAGCCGAAGCTATCTCAAATCGC
26804167 ACACTAAGTGCCA
1 ACACTAAGTGCCA
26804180 CAAATAGTCA
Statistics
Matches: 45, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
40 45 1.00
ACGTcount: A:0.33, C:0.27, G:0.19, T:0.20
Consensus pattern (40 bp):
ACACTAAGTGCCATACACAGCCGAAGCTATCTCAAATCGC
Found at i:26806294 original size:21 final size:22
Alignment explanation
Indices: 26806268--26806309 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 22
26806258 AGCACGGACG
*
26806268 TGTCCCATGG-TCACATGGGCA
1 TGTCCCATGGACCACATGGGCA
*
26806289 TGTCCCTTGGACCACATGGGC
1 TGTCCCATGGACCACATGGGC
26806310 GTGTGAGCCC
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
21 9 0.50
22 9 0.50
ACGTcount: A:0.17, C:0.31, G:0.29, T:0.24
Consensus pattern (22 bp):
TGTCCCATGGACCACATGGGCA
Found at i:26818348 original size:40 final size:40
Alignment explanation
Indices: 26818102--26818351 Score: 224
Period size: 40 Copynumber: 6.3 Consensus size: 40
26818092 ACCCAAGTAT
* * *
26818102 CTTCGGGATTTAG-CCGG-ATATAACCACTCGCAC-AAGGC
1 CTTCGGGACTTAGCCCGGAAT-TAATCACTCGCACAAATGC
* *** * *
26818140 CTTCGGGTCTTAGCCCGG-ATATGGCCACTAGCATAAATGC
1 CTTCGGGACTTAGCCCGGAAT-TAATCACTCGCACAAATGC
* *
26818180 CTTCGGGTCTTAGCCCGG-ATATAA-CAACTCGCACAGATGC
1 CTTCGGGACTTAGCCCGGAAT-TAATC-ACTCGCACAAATGC
* * * *
26818220 CTTCGGGACTTAGCCCGGAATTAGTAACTCGTACCAATGC
1 CTTCGGGACTTAGCCCGGAATTAATCACTCGCACAAATGC
* * *
26818260 CTTCGGGACTTAGCCCGAAATTTATAACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGAATTAATCACTCGCACAAATGC
* * *
26818300 CTTCGGGACTTAGCCCGGAATTAATCACTAGCACACATGT
1 CTTCGGGACTTAGCCCGGAATTAATCACTCGCACAAATGC
*
26818340 CTTTGGGACTTA
1 CTTCGGGACTTA
26818352 ACCCCGTTAG
Statistics
Matches: 177, Mismatches: 30, Indels: 8
0.82 0.14 0.04
Matches are distributed among these distances:
38 11 0.06
39 17 0.10
40 147 0.83
41 2 0.01
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CTTCGGGACTTAGCCCGGAATTAATCACTCGCACAAATGC
Found at i:26818348 original size:80 final size:80
Alignment explanation
Indices: 26818102--26818351 Score: 258
Period size: 80 Copynumber: 3.1 Consensus size: 80
26818092 ACCCAAGTAT
* * * * * *
26818102 CTTCGGGATTTAG-CCGGATATAACCACTCGCAC-AAGGCCTTCGGGTCTTAGCCCGG-ATATGG
1 CTTCGGGACTTAGCCCGAATATAACAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAAT-TAG
* * *
26818164 CCACTAGCATAAATGC
65 TCACTAGCACACATGC
* * *
26818180 CTTCGGGTCTTAGCCCGGATATAACAACTCGCACAGATGCCTTCGGGACTTAGCCCGGAATTAGT
1 CTTCGGGACTTAGCCCGAATATAACAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGT
* * *
26818245 AACTCGTAC-CAATGC
66 CACTAGCACAC-ATGC
* * *
26818260 CTTCGGGACTTAGCCCGAA-ATTTATAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAA
1 CTTCGGGACTTAGCCCGAATA-TAACAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAG
*
26818324 TCACTAGCACACATGT
65 TCACTAGCACACATGC
*
26818340 CTTTGGGACTTA
1 CTTCGGGACTTA
26818352 ACCCCGTTAG
Statistics
Matches: 142, Mismatches: 24, Indels: 10
0.81 0.14 0.06
Matches are distributed among these distances:
78 11 0.08
79 20 0.14
80 108 0.76
81 3 0.02
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.25
Consensus pattern (80 bp):
CTTCGGGACTTAGCCCGAATATAACAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGT
CACTAGCACACATGC
Found at i:26831396 original size:51 final size:49
Alignment explanation
Indices: 26831291--26831573 Score: 276
Period size: 51 Copynumber: 5.8 Consensus size: 49
26831281 GGTGCCGACA
* * * * * * *
26831291 CCATGTCCCGGACATGGTCTTACACTGGCTCAC-ACATCAAAGTCGATG
1 CCATGTCCCAGACATGGTCTTACACTAGCTCTCTATATCGAGGCCGATG
*
26831339 CCATGTCCCAAACATGGGTCTTACACT-GACTCTCGTATATCGAGGCCGATG
1 CCATGTCCCAGACAT-GGTCTTACACTAG-CTCTC-TATATCGAGGCCGATG
* * **
26831390 CCATGTCCCAGACATGGTCTTACACTAAC-C-C-ATATC-AAGTTGATG
1 CCATGTCCCAGACATGGTCTTACACTAGCTCTCTATATCGAGGCCGATG
* * * *
26831435 CCATGTCTCAGACATGGTCTTACACTAGCTCTCAAATCTCGAGGCTGATG
1 CCATGTCCCAGACATGGTCTTACACTAGCTCTC-TATATCGAGGCCGATG
*
26831485 CCATGTCCCAGACACGGTCTTACACTAGCTCT-TATATCTTGAGGCCGGATG
1 CCATGTCCCAGACATGGTCTTACACTAGCTCTCTATATC--GAGGCC-GATG
* *
26831536 CCATGTCCCAAACATGGTCTTACACTAGTTCTC-ATATC
1 CCATGTCCCAGACATGGTCTTACACTAGCTCTCTATATC
26831574 TCCCTAGCAT
Statistics
Matches: 196, Mismatches: 25, Indels: 25
0.80 0.10 0.10
Matches are distributed among these distances:
45 33 0.17
46 6 0.03
47 1 0.01
48 19 0.10
49 20 0.10
50 54 0.28
51 63 0.32
ACGTcount: A:0.25, C:0.30, G:0.19, T:0.27
Consensus pattern (49 bp):
CCATGTCCCAGACATGGTCTTACACTAGCTCTCTATATCGAGGCCGATG
Found at i:26831486 original size:95 final size:99
Alignment explanation
Indices: 26831291--26831561 Score: 293
Period size: 95 Copynumber: 2.8 Consensus size: 99
26831281 GGTGCCGACA
* **
26831291 CCATGTCCCGGACATGGTCTTACACTGGCTCACACATCAAAGTCGATGCCATGTCCCAAACATGG
1 CCATGTCCCAGACATGGTCTTACACTAACTCACACATCAAAGTCGATGCCATGTCCCAAACATGG
**
26831356 GTCTTACACTGACTCTCGTATATCGAGGCCGATG
66 GTCTTACACTGACTCTCAAATATCGAGGCCGATG
* * * *
26831390 CCATGTCCCAGACATGGTCTTACACTAAC-C-CATATC-AAGTTGATGCCATGTCTCAGACAT-G
1 CCATGTCCCAGACATGGTCTTACACTAACTCACACATCAAAGTCGATGCCATGTCCCAAACATGG
* *
26831451 GTCTTACACT-AGCTCTCAAATCTCGAGGCTGATG
66 GTCTTACACTGA-CTCTCAAATATCGAGGCCGATG
* * ** * * * *
26831485 CCATGTCCCAGACACGGTCTTACACTAGCTCTTATATCTTGAGGCCGGATGCCATGTCCCAAACA
1 CCATGTCCCAGACATGGTCTTACACTAACTCACACATC--AAAGTC-GATGCCATGTCCCAAACA
26831550 T-GGTCTTACACT
63 TGGGTCTTACACT
26831562 AGTTCTCATA
Statistics
Matches: 146, Mismatches: 19, Indels: 12
0.82 0.11 0.07
Matches are distributed among these distances:
94 1 0.01
95 56 0.38
96 22 0.15
97 10 0.07
98 1 0.01
99 26 0.18
100 2 0.01
101 28 0.19
ACGTcount: A:0.25, C:0.30, G:0.19, T:0.26
Consensus pattern (99 bp):
CCATGTCCCAGACATGGTCTTACACTAACTCACACATCAAAGTCGATGCCATGTCCCAAACATGG
GTCTTACACTGACTCTCAAATATCGAGGCCGATG
Found at i:26831553 original size:146 final size:143
Alignment explanation
Indices: 26831291--26831562 Score: 361
Period size: 146 Copynumber: 1.9 Consensus size: 143
26831281 GGTGCCGACA
* * * * *
26831291 CCATGTCCCGGACATGGTCTTACACTGGCTCACACATCAAAGTCGATGCCATGTCCCAAACATGG
1 CCATGTCCCAGACATGGTCTTACACTAGCTCACAAATCAAAGGCGATGCCATGTCCCAAACATCG
*
26831356 GTCTTACACTGACTCTCGTATATCGAGGCCGATGCCATGTCCCAGACATGGTCTTACACTAACCC
66 GTCTTACACTGACTCTC-TATATCGAGGCCGATGCCATGTCCCAAACATGGTCTTACACTAACCC
26831421 ATATCAAGTTGATG
130 ATATCAAGTTGATG
* * ** *
26831435 CCATGTCTCAGACATGGTCTTACACTAGCTCTCAAATCTCGAGGCTGATGCCATGTCCCAGACA-
1 CCATGTCCCAGACATGGTCTTACACTAGCTCACAAATC-AAAGGC-GATGCCATGTCCCAAACAT
26831499 CGGTCTTACACT-AGCTCT-TATATCTTGAGGCCGGATGCCATGTCCCAAACATGGTCTTACACT
64 CGGTCTTACACTGA-CTCTCTATATC--GAGGCC-GATGCCATGTCCCAAACATGGTCTTACACT
26831562 A
125 A
26831563 GTTCTCATAT
Statistics
Matches: 111, Mismatches: 11, Indels: 10
0.84 0.08 0.08
Matches are distributed among these distances:
143 6 0.05
144 34 0.31
145 24 0.22
146 47 0.42
ACGTcount: A:0.25, C:0.30, G:0.19, T:0.26
Consensus pattern (143 bp):
CCATGTCCCAGACATGGTCTTACACTAGCTCACAAATCAAAGGCGATGCCATGTCCCAAACATCG
GTCTTACACTGACTCTCTATATCGAGGCCGATGCCATGTCCCAAACATGGTCTTACACTAACCCA
TATCAAGTTGATG
Found at i:26831574 original size:51 final size:50
Alignment explanation
Indices: 26831291--26831575 Score: 289
Period size: 50 Copynumber: 5.8 Consensus size: 50
26831281 GGTGCCGACA
* * * * ** *
26831291 CCATGTCCCGGACATGGTCTTACACTGGCTCACACATC-AAAGTC-GATG
1 CCATGTCCCAGACATGGTCTTACACTAGCTCTCATATCTCGAGGCTGATG
* * * *
26831339 CCATGTCCCAAACATGGGTCTTACACT-GACTCTCGTATATCGAGGCCGATG
1 CCATGTCCCAGACAT-GGTCTTACACTAG-CTCTCATATCTCGAGGCTGATG
* * *
26831390 CCATGTCCCAGACATGGTCTTACACTAAC-C-CATA--TC-AAGTTGATG
1 CCATGTCCCAGACATGGTCTTACACTAGCTCTCATATCTCGAGGCTGATG
* *
26831435 CCATGTCTCAGACATGGTCTTACACTAGCTCTCAAATCTCGAGGCTGATG
1 CCATGTCCCAGACATGGTCTTACACTAGCTCTCATATCTCGAGGCTGATG
* * * *
26831485 CCATGTCCCAGACACGGTCTTACACTAGCTCTTATATCTTGAGGCCGGATG
1 CCATGTCCCAGACATGGTCTTACACTAGCTCTCATATCTCGAGG-CTGATG
* *
26831536 CCATGTCCCAAACATGGTCTTACACTAGTTCTCATATCTC
1 CCATGTCCCAGACATGGTCTTACACTAGCTCTCATATCTC
26831576 CCTAGCATTA
Statistics
Matches: 195, Mismatches: 31, Indels: 19
0.80 0.13 0.08
Matches are distributed among these distances:
45 33 0.17
46 3 0.02
47 3 0.02
48 17 0.09
49 20 0.10
50 61 0.31
51 58 0.30
ACGTcount: A:0.25, C:0.30, G:0.19, T:0.27
Consensus pattern (50 bp):
CCATGTCCCAGACATGGTCTTACACTAGCTCTCATATCTCGAGGCTGATG
Found at i:26833143 original size:46 final size:48
Alignment explanation
Indices: 26832961--26833232 Score: 235
Period size: 46 Copynumber: 5.8 Consensus size: 48
26832951 AGGGTATAAT
* * *
26832961 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACA-CGTCAA
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTTACATCTTCTA
* * * ** * *
26833008 GTCAATGCCATGTCCCAGACATAGTCTTACACTGAATTTAACATATCCGT-
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTG-GCTT-ACATCTTC-TA
* * *
26833058 GCCGATGCCGTGTCCCAGACATGGTCTTACACT-G-ATACATCTTGTA
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTTACATCTTCTA
*
26833104 GCCGATG-CATGTCCCAGACAT-GTCTTACACTGGCTTACATC-TCCA
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTTACATCTTCTA
* * *
26833149 GGCCGATG-CATG-CCCTAGACAT-GCCTTACACTAGCTCT-CAT-TTCAA
1 -GCCGATGCCATGTCCC-AGACATGGTCTTACACTGGCT-TACATCTTCTA
*
26833195 TGCTGATGCCATGTCCCAGACATGGTCTTACACTGGCT
1 -GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCT
26833233 CTCGTAATGT
Statistics
Matches: 181, Mismatches: 30, Indels: 27
0.76 0.13 0.11
Matches are distributed among these distances:
44 10 0.06
45 20 0.11
46 59 0.33
47 43 0.24
48 16 0.09
49 3 0.02
50 30 0.17
ACGTcount: A:0.24, C:0.31, G:0.19, T:0.27
Consensus pattern (48 bp):
GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTTACATCTTCTA
Found at i:26833249 original size:94 final size:92
Alignment explanation
Indices: 26833107--26833277 Score: 219
Period size: 94 Copynumber: 1.8 Consensus size: 92
26833097 TCTTGTAGCC
*
26833107 GATGCATGTCCCAGACATGTCTTACACTGGCTTACATCTCCAGGCCGATGCATG-CCCTAGACAT
1 GATGCATGTCCCAGACATGTCTTACACTGGCTTACATCTCAAGGCCGATGCATGTCCC-AGACAT
26833171 GC-CTTACACTAGCTCTCATTTCAATGCT
65 -CTCTTACACTAGCTCTCATTTCAATGCT
26833199 GATGCCATGTCCCAGACATGGTCTTACACTGGC-T-C-TCGT-AATGTGTCCGATGCATGTCCCA
1 GATG-CATGTCCCAGACAT-GTCTTACACTGGCTTACATC-TCAA-G-G-CCGATGCATGTCCCA
26833260 GACATCTCTTACACTAGC
60 GACATCTCTTACACTAGC
26833278 ACACAATTAG
Statistics
Matches: 70, Mismatches: 1, Indels: 14
0.82 0.01 0.16
Matches are distributed among these distances:
91 3 0.04
92 7 0.10
93 17 0.24
94 40 0.57
95 3 0.04
ACGTcount: A:0.22, C:0.31, G:0.19, T:0.28
Consensus pattern (92 bp):
GATGCATGTCCCAGACATGTCTTACACTGGCTTACATCTCAAGGCCGATGCATGTCCCAGACATC
TCTTACACTAGCTCTCATTTCAATGCT
Found at i:26833256 original size:47 final size:46
Alignment explanation
Indices: 26832960--26833274 Score: 210
Period size: 46 Copynumber: 6.7 Consensus size: 46
26832950 TAGGGTATAA
*
26832960 TGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACACGTCAAG
1 TGCCGATGCCATGTCCCAGACAT-GTCTTACACTGGCT-ACTC-TCAAG
* ** * *
26833009 T--CAATGCCATGTCCCAGACATAGTCTTACACTGAATTTAACATATC-CG
1 TGCCGATGCCATGTCCCAGACAT-GTCTTACACTG--GCT-AC-TCTCAAG
* * *
26833057 TGCCGATGCCGTGTCCCAGACATGGTCTTACACT-GATACATCT--TG
1 TGCCGATGCCATGTCCCAGACAT-GTCTTACACTGGCTAC-TCTCAAG
*
26833102 TAGCCGATG-CATGTCCCAGACATGTCTTACACTGGCTTACATCTCCAG
1 T-GCCGATGCCATGTCCCAGACATGTCTTACACTGGC-TAC-TCTCAAG
* *
26833150 -GCCGATG-CATG-CCCTAGACATGCCTTACACTAGCT-CTCATTTCAA-
1 TGCCGATGCCATGTCCC-AGACATGTCTTACACTGGCTACTC---TCAAG
*
26833195 TGCTGATGCCATGTCCCAGACATGGTCTTACACTGGCT-CTCGT-AATG
1 TGCCGATGCCATGTCCCAGACAT-GTCTTACACTGGCTACTC-TCAA-G
*
26833242 TGTCCGATG-CATGTCCCAGACATCTCTTACACT
1 TG-CCGATGCCATGTCCCAGACATGTCTTACACT
26833275 AGCACACAAT
Statistics
Matches: 218, Mismatches: 27, Indels: 45
0.75 0.09 0.16
Matches are distributed among these distances:
43 2 0.01
44 11 0.05
45 22 0.10
46 66 0.30
47 57 0.26
48 26 0.12
49 6 0.03
50 28 0.13
ACGTcount: A:0.23, C:0.30, G:0.19, T:0.28
Consensus pattern (46 bp):
TGCCGATGCCATGTCCCAGACATGTCTTACACTGGCTACTCTCAAG
Found at i:26840153 original size:47 final size:47
Alignment explanation
Indices: 26840099--26840331 Score: 340
Period size: 47 Copynumber: 5.0 Consensus size: 47
26840089 TTAGGATTTT
** * *
26840099 ATGTGATGAATGTGAATGTGTATATATGAGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
*
26840146 ATGTGATGAATGTGAACATGCATACATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
26840193 ATGTGATGAATGTGAACGTGCATATATGTGATAAGGCTGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * *
26840240 ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGTCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * * *
26840287 ATGTGGTGAATATGAACATGCATATATGTGGTAAAGCCGAATGGC
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGC
26840332 TAATATGAAA
Statistics
Matches: 166, Mismatches: 20, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
47 166 1.00
ACGTcount: A:0.33, C:0.11, G:0.30, T:0.27
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
Found at i:26840199 original size:22 final size:22
Alignment explanation
Indices: 26840128--26840246 Score: 73
Period size: 22 Copynumber: 5.1 Consensus size: 22
26840118 GTATATATGA
*
26840128 GATAAGGCCGAATGGCCAATGT
1 GATAAGGCTGAATGGCCAATGT
* *
26840150 GATGAATG-TGAACAT-GCATACATGT
1 GAT-AAGGCTG-A-ATGGC-CA-ATGT
*
26840175 GATAAGGCCGAATGGCCAATGT
1 GATAAGGCTGAATGGCCAATGT
* * *
26840197 GATGAATG-TGAACGTGCATATATGT
1 GAT-AAGGCTGAATG-GC-CA-ATGT
26840222 GATAAGGCTGAATGGCCAATGT
1 GATAAGGCTGAATGGCCAATGT
26840244 GAT
1 GAT
26840247 GAATGTGAGC
Statistics
Matches: 72, Mismatches: 13, Indels: 24
0.66 0.12 0.22
Matches are distributed among these distances:
22 22 0.31
23 15 0.21
24 15 0.21
25 20 0.28
ACGTcount: A:0.33, C:0.13, G:0.29, T:0.24
Consensus pattern (22 bp):
GATAAGGCTGAATGGCCAATGT
Found at i:26840233 original size:25 final size:24
Alignment explanation
Indices: 26840145--26840233 Score: 60
Period size: 25 Copynumber: 3.7 Consensus size: 24
26840135 CCGAATGGCC
* *
26840145 AATGTGATGAATG-TGAACATGCAT
1 AATGTGAT-AAGGCTGAACGTGCAT
* * *
26840169 ACATGTGATAAGGCCGAATG-GC-C
1 A-ATGTGATAAGGCTGAACGTGCAT
*
26840192 AATGTGATGAATG-TGAACGTGCAT
1 AATGTGAT-AAGGCTGAACGTGCAT
26840216 ATATGTGATAAGGCTGAA
1 A-ATGTGATAAGGCTGAA
26840234 TGGCCAATGT
Statistics
Matches: 48, Mismatches: 10, Indels: 13
0.68 0.14 0.18
Matches are distributed among these distances:
22 11 0.23
23 6 0.12
24 10 0.21
25 21 0.44
ACGTcount: A:0.35, C:0.11, G:0.28, T:0.26
Consensus pattern (24 bp):
AATGTGATAAGGCTGAACGTGCAT
Found at i:26840464 original size:98 final size:96
Alignment explanation
Indices: 26840310--26840493 Score: 307
Period size: 98 Copynumber: 1.9 Consensus size: 96
26840300 GAACATGCAT
*
26840310 ATATGTGGTAAAGCCGAATGGCTAATATGAAATATGTATGAGATATGTATATGTGGTAAAGCCGA
1 ATATGTGGTAAAGCCGAATGGCTAATATGAAATATATATGAGATATGTATATGTGGTAAAGCCGA
26840375 ATGGCTAATGTGAAATATGTATGAGATATGC
66 ATGGCTAATGTGAAATATGTATGAGATATGC
*
26840406 ATATGTGGTAAAGCCGAATGG-TCAATGTGAAATATATATATGAGATATGTATATGTGGTAAAGC
1 ATATGTGGTAAAGCCGAATGGCT-AATATG-AA-ATATATATGAGATATGTATATGTGGTAAAGC
*
26840470 CGAATGGCTAGTGTGAAATATGTA
63 CGAATGGCTAATGTGAAATATGTA
26840494 GGCGATGTGC
Statistics
Matches: 82, Mismatches: 3, Indels: 4
0.92 0.03 0.04
Matches are distributed among these distances:
95 1 0.01
96 26 0.32
97 2 0.02
98 53 0.65
ACGTcount: A:0.36, C:0.07, G:0.26, T:0.30
Consensus pattern (96 bp):
ATATGTGGTAAAGCCGAATGGCTAATATGAAATATATATGAGATATGTATATGTGGTAAAGCCGA
ATGGCTAATGTGAAATATGTATGAGATATGC
Found at i:26840509 original size:50 final size:48
Alignment explanation
Indices: 26840309--26840493 Score: 300
Period size: 48 Copynumber: 3.8 Consensus size: 48
26840299 TGAACATGCA
*
26840309 TATATGTGGTAAAGCCGAATGGCTAATATGAAATATGTATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
26840357 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
* *
26840405 CATATGTGGTAAAGCCGAATGG-TCAATGTGAAATATATATATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCT-AATGTG-AA-ATATGTATGAGATATG
*
26840455 TATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTA
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTA
26840494 GGCGATGTGC
Statistics
Matches: 127, Mismatches: 6, Indels: 8
0.90 0.04 0.06
Matches are distributed among these distances:
47 1 0.01
48 80 0.63
49 4 0.03
50 41 0.32
51 1 0.01
ACGTcount: A:0.36, C:0.07, G:0.26, T:0.31
Consensus pattern (48 bp):
TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
Found at i:26840678 original size:37 final size:37
Alignment explanation
Indices: 26840628--26840703 Score: 143
Period size: 37 Copynumber: 2.1 Consensus size: 37
26840618 ACATGAAACT
26840628 TGGAAATATATTCCGGGTAAGACCCAATGACTACGTG
1 TGGAAATATATTCCGGGTAAGACCCAATGACTACGTG
*
26840665 TGGAAATATATTCCGGGTAAGACCCGATGACTACGTG
1 TGGAAATATATTCCGGGTAAGACCCAATGACTACGTG
26840702 TG
1 TG
26840704 ACAGCCCAAA
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.30, C:0.18, G:0.26, T:0.25
Consensus pattern (37 bp):
TGGAAATATATTCCGGGTAAGACCCAATGACTACGTG
Found at i:26842792 original size:40 final size:40
Alignment explanation
Indices: 26842708--26842891 Score: 196
Period size: 40 Copynumber: 4.6 Consensus size: 40
26842698 TTGAATGCTG
* * * *
26842708 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACT-AT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTATTAAT
** *
26842747 ATCCGGACTAAGAT-CCGAAGGTATTTGTGCGAGTTATTAAT
1 -TCCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTTATTAAT
* * *
26842788 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAGATACTAAT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATTAAT
* *
26842828 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTT-TTAAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATT-AAT
26842868 TCCGGGTTAAGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
26842892 GAATGAGTTA
Statistics
Matches: 123, Mismatches: 16, Indels: 10
0.83 0.11 0.07
Matches are distributed among these distances:
39 2 0.02
40 111 0.90
41 10 0.08
ACGTcount: A:0.24, C:0.21, G:0.27, T:0.28
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATTAAT
Found at i:26842845 original size:80 final size:81
Alignment explanation
Indices: 26842708--26842888 Score: 221
Period size: 80 Copynumber: 2.3 Consensus size: 81
26842698 TTGAATGCTG
* * *
26842708 TCCGGGCTAAGTCCCGAAGG-CTTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGTATT
1 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
* *
26842772 TGTGCGAGTTATT-AAT
66 CGTGCGAGTT-TTAAAA
**
26842788 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCG-AGAT-ACTA-ATTCCGGGTTAAG-TCCCGAAGGC
1 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAAG-TGACTATA-TCCGGACTAAGAT-CCGAAGGC
26842849 ATTCGTGCGAGTTTTAAAA
63 ATTCGTGCGAGTTTTAAAA
26842868 TCCGGGTTAAGTCCCGAAGGC
1 TCCGGGTTAAGTCCCGAAGGC
26842889 ATTGAATGAG
Statistics
Matches: 89, Mismatches: 7, Indels: 10
0.84 0.07 0.09
Matches are distributed among these distances:
79 4 0.04
80 76 0.85
81 9 0.10
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.28
Consensus pattern (81 bp):
TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
CGTGCGAGTTTTAAAA
Found at i:26842912 original size:39 final size:38
Alignment explanation
Indices: 26842789--26842938 Score: 131
Period size: 40 Copynumber: 3.8 Consensus size: 38
26842779 GTTATTAATT
* ** * *
26842789 CCGGGTTAAGTCCCGAAGGCCTTTGTGCGAGATACTAATT
1 CCGGGTTAAGTCCCGAAGG-CATTGAACGAGTTACTAA-A
** *
26842829 CCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTT-TTAAAA
1 CCGGGTTAAGTCCCGAAGGCATT-GAACGAGTTACT-AAA
*
26842868 TCCGGGTTAAGTCCCGAAGGCATTGAATGAGTTACTATAA
1 -CCGGGTTAAGTCCCGAAGGCATTGAACGAGTTACTA-AA
* *
26842908 CCGGGCTATGTCCCGAAGGCACTTGAACGAG
1 CCGGGTTAAGTCCCGAAGGCA-TTGAACGAG
26842939 GAGCTAAATC
Statistics
Matches: 93, Mismatches: 11, Indels: 12
0.80 0.09 0.10
Matches are distributed among these distances:
39 30 0.32
40 63 0.68
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (38 bp):
CCGGGTTAAGTCCCGAAGGCATTGAACGAGTTACTAAA
Found at i:26850695 original size:40 final size:39
Alignment explanation
Indices: 26850664--26850873 Score: 242
Period size: 40 Copynumber: 5.3 Consensus size: 39
26850654 GGACTAAGAT
* *
26850664 CCGAAGGCATTTGTGCGAGATACAAATTCCGGGTTAAGCC
1 CCGAAGGCATTCGTGCGAGATACAAA-TCCGGGTTAAGTC
* *
26850704 CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGATAC-AAATCCGGGTTAAGTC
* *
26850744 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGATA-CAAATCCGGGTTAAGTC
* * *
26850784 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTATGTC
1 CCGAAGGCATTCGTGCGAGATA-CAAATCCGGGTTAAGTC
* * * * *
26850824 CCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTC
1 CCGAAGGCATTCGTGCGAGATAC-AAATCCGGGTTAAGTC
26850863 CCGAAGGCATT
1 CCGAAGGCATT
26850874 TGAACGAGGA
Statistics
Matches: 156, Mismatches: 11, Indels: 7
0.90 0.06 0.04
Matches are distributed among these distances:
39 34 0.22
40 119 0.76
41 3 0.02
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (39 bp):
CCGAAGGCATTCGTGCGAGATACAAATCCGGGTTAAGTC
Found at i:26850827 original size:120 final size:120
Alignment explanation
Indices: 26850611--26850873 Score: 309
Period size: 120 Copynumber: 2.2 Consensus size: 120
26850601 TTGAATGCTG
* *
26850611 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGAATAAATCCGGACTAAGATCCGAAGGCATT
* *
26850675 TGTGCGAGATACAAATTCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACTAAA
66 CGTGCGAGATACAAATTCCGGGTTAAGCCCCGAAGG-CATTGTGCGAGATACTAAA
* * * * **
26850731 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTATTAAATCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGAATAAATCCGGACTAAGAT-CCGAAGGCAT
* * * * * *
26850794 TCGTGCGAGTTATTAAA-TCCGGGTTATGTCCCGAAGGCATTGTGTGAGTTACTAAA
65 TCGTGCGAGATA-CAAATTCCGGGTTAAGCCCCGAAGGCATTGTGCGAGATACTAAA
* *
26850850 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
26850874 TGAACGAGGA
Statistics
Matches: 121, Mismatches: 19, Indels: 7
0.82 0.13 0.05
Matches are distributed among these distances:
119 38 0.31
120 74 0.61
121 9 0.07
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.26
Consensus pattern (120 bp):
TCCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGAATAAATCCGGACTAAGATCCGAAGGCATT
CGTGCGAGATACAAATTCCGGGTTAAGCCCCGAAGGCATTGTGCGAGATACTAAA
Found at i:26850893 original size:79 final size:80
Alignment explanation
Indices: 26850612--26850908 Score: 230
Period size: 80 Copynumber: 3.7 Consensus size: 80
26850602 TGAATGCTGT
* ** * * * **
26850612 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATATCCGGACTAAGAT-CCGAAGGCATT
1 CCGGGCTAAGTCCCGAAGGCATTCGAAC-GAGTGACTAAATCCGGGTTAAG-TCCCGAAGGCATT
* * *
26850675 TGTGCGAGATAC-AAATT
64 CGTGCGAGTTACTAAA-A
* * * * **
26850692 CCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGAT-ACTAAATCCGGGTTAAGTCCCGAAGGCATTC
1 CCGGGCTAAGTCCCGAAGGCATTCGAACGAG-TGACTAAATCCGGGTTAAGTCCCGAAGGCATTC
* *
26850756 GTGCGAGTTATTAAAT
65 GTGCGAGTTACTAAAA
* ** * * *
26850772 CCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTATGTCCCGAAGGCATT-G
1 CCGGGCTAAGTCCCGAAGGCATTCGAACGAGTGACTAAATCCGGGTTAAGTCCCGAAGGCATTCG
*
26850836 TGTGAGTTACTAAAA
66 TGCGAGTTACTAAAA
* * * *
26850851 CCGGGCTATGTCCCGAAGGCATTTGAACGAG-GAGCTATATCC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGGCATTCGAACGAGTGA-CTAAATCCGGGTTAAGTCCCGAAGG
26850909 TACGTGATTT
Statistics
Matches: 183, Mismatches: 28, Indels: 14
0.81 0.12 0.06
Matches are distributed among these distances:
78 15 0.08
79 47 0.26
80 110 0.60
81 11 0.06
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (80 bp):
CCGGGCTAAGTCCCGAAGGCATTCGAACGAGTGACTAAATCCGGGTTAAGTCCCGAAGGCATTCG
TGCGAGTTACTAAAA
Found at i:26856860 original size:3 final size:3
Alignment explanation
Indices: 26856852--26856906 Score: 56
Period size: 3 Copynumber: 18.0 Consensus size: 3
26856842 ACAACGGGTT
* * ** *
26856852 TTA TTA TTA TTA TTA ATA TTA TTT TTA TTA TTA TATA GCA TTA TTT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T-TA TTA TTA TTA
26856898 TTA TTA TTA
1 TTA TTA TTA
26856907 AACCAACATA
Statistics
Matches: 41, Mismatches: 10, Indels: 2
0.77 0.19 0.04
Matches are distributed among these distances:
3 39 0.95
4 2 0.05
ACGTcount: A:0.33, C:0.02, G:0.02, T:0.64
Consensus pattern (3 bp):
TTA
Found at i:26856897 original size:22 final size:21
Alignment explanation
Indices: 26856855--26856906 Score: 77
Period size: 22 Copynumber: 2.4 Consensus size: 21
26856845 ACGGGTTTTA
*
26856855 TTATTATTATTAATATTATTT
1 TTATTATTATTAACATTATTT
*
26856876 TTATTATTATATAGCATTATTT
1 TTATTATTAT-TAACATTATTT
26856898 TTATTATTA
1 TTATTATTA
26856907 AACCAACATA
Statistics
Matches: 28, Mismatches: 2, Indels: 1
0.90 0.06 0.03
Matches are distributed among these distances:
21 10 0.36
22 18 0.64
ACGTcount: A:0.33, C:0.02, G:0.02, T:0.63
Consensus pattern (21 bp):
TTATTATTATTAACATTATTT
Done.