Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr3
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 100348136
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 3062571 characters in sequence are not A, C, G, or T
File 9 of 290
Found at i:2579361 original size:216 final size:216
Alignment explanation
Indices: 2579021--2579421 Score: 601
Period size: 216 Copynumber: 1.9 Consensus size: 216
2579011 ATCTGTTTCC
* * ** * *
2579021 CTACTGCTTAGGGTGTTAAGATCTGTAAATTTAGCCTGTTACCCTACTGCTTAGGGGTTTAAGGC
1 CTACTGCTTAGGGGGATAAGATCTGTAAATCCAGCCTGTTACCCTACTACTTAGGGGTTTAAGCC
* * *
2579086 CATCGCCTTCGATCTGTTTCCCTACTGCTTAGGGTGTTAAGATCTGTAAATTTAGCCTGTTACCC
66 CATCGCCTTCGATCTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGGAAATTCAGCCTGTTACCC
*
2579151 TACTGCTTAGGGGTTTAAGG-CCATCGCCTTCGATCTGTTTCC-CTACTGCTTAGGGGGTTAATA
131 TACTGCTTAGGGG-TTAAGGCCCATCGCCTTCGATCTG-CTCCACTACTGCTTAGGGGGTTAATA
2579214 TCTTTCGTCTTTGATTTGCCCCA
194 TCTTTCGTCTTTGATTTGCCCCA
* *
2579237 CTACTGCTTAGGGGGATAAGATCTGT-AATCCGGTCTGTTACCCTACTACTTAGGGGTTTAAGAC
1 CTACTGCTTAGGGGGATAAGATCTGTAAATCCAGCCTGTTACCCTACTACTTAGGGGTTTAAG-C
* * *
2579301 CCTTCGTCTTCGATCTGTTTCCCTACTGTTTAGGGGGTTAAGATCTGGAAATTCAGCCTGTTACC
65 CCATCGCCTTCGATCTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGGAAATTCAGCCTGTTACC
* *
2579366 CTACTGCTTAGGGGTTAAGGCCCTTCGTCTTCGATCTGCTCCACTACTGCTTAGGG
130 CTACTGCTTAGGGGTTAAGGCCCATCGCCTTCGATCTGCTCCACTACTGCTTAGGG
2579422 AAATAAGATC
Statistics
Matches: 165, Mismatches: 17, Indels: 6
0.88 0.09 0.03
Matches are distributed among these distances:
215 40 0.24
216 125 0.76
ACGTcount: A:0.18, C:0.24, G:0.23, T:0.35
Consensus pattern (216 bp):
CTACTGCTTAGGGGGATAAGATCTGTAAATCCAGCCTGTTACCCTACTACTTAGGGGTTTAAGCC
CATCGCCTTCGATCTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGGAAATTCAGCCTGTTACCC
TACTGCTTAGGGGTTAAGGCCCATCGCCTTCGATCTGCTCCACTACTGCTTAGGGGGTTAATATC
TTTCGTCTTTGATTTGCCCCA
Found at i:2579377 original size:173 final size:174
Alignment explanation
Indices: 2579185--2579558 Score: 563
Period size: 173 Copynumber: 2.2 Consensus size: 174
2579175 CGCCTTCGAT
* * * * * *
2579185 CTGTTTCCCTACTGCTTAGGGGGTTAATATCTTTCGTCTTTGATTTGCCCCACTACTGCTTAGGG
1 CTGTTACCCTACTGCTTAGGGGGTTAAGACCCTTCGTCTTCGATCTGCCCCACTACTGCTTAGGG
** * *
2579250 GGATAAGATCTGTAATCCGGTCTGTTACCCTACTACTTA-GGGGTTTAAGACCCTTCGTCTTCGA
66 AAATAAGATCTGCAATCCGGTCTGTTACCCTACTACTTAGGGGGTTTAAGACCCTTCATCTTCGA
* *
2579314 TCTGTTTCCCTACTGTTTAGGGGGTTAAGATCTGGAAATTCAGC
131 TCTATTTCCCTACTGCTTAGGGGGTTAAGATCTGGAAATTCAGC
* *
2579358 CTGTTACCCTACTGCTTA-GGGGTTAAGGCCCTTCGTCTTCGATCTGCTCCACTACTGCTTAGGG
1 CTGTTACCCTACTGCTTAGGGGGTTAAGACCCTTCGTCTTCGATCTGCCCCACTACTGCTTAGGG
* *
2579422 AAATAAGATCTGCAATTCGGTCTGTTACCCTACTGCTTAGGGGGTTTAAGACCCTTCATCTTCGA
66 AAATAAGATCTGCAATCCGGTCTGTTACCCTACTACTTAGGGGGTTTAAGACCCTTCATCTTCGA
*
2579487 TCTATTTCCCTACTGCTTAGGGGGTTAAGATCTGGAACTTCAGC
131 TCTATTTCCCTACTGCTTAGGGGGTTAAGATCTGGAAATTCAGC
* *
2579531 CCGTTACCCTACTGTTTAGGGGGTTAAG
1 CTGTTACCCTACTGCTTAGGGGGTTAAG
2579559 GCTTGTGAAT
Statistics
Matches: 180, Mismatches: 19, Indels: 3
0.89 0.09 0.01
Matches are distributed among these distances:
172 73 0.41
173 98 0.54
174 9 0.05
ACGTcount: A:0.19, C:0.24, G:0.23, T:0.34
Consensus pattern (174 bp):
CTGTTACCCTACTGCTTAGGGGGTTAAGACCCTTCGTCTTCGATCTGCCCCACTACTGCTTAGGG
AAATAAGATCTGCAATCCGGTCTGTTACCCTACTACTTAGGGGGTTTAAGACCCTTCATCTTCGA
TCTATTTCCCTACTGCTTAGGGGGTTAAGATCTGGAAATTCAGC
Found at i:2579463 original size:42 final size:42
Alignment explanation
Indices: 2578749--2579558 Score: 404
Period size: 43 Copynumber: 18.8 Consensus size: 42
2578739 GGCCATCGCC
* * * *
2578749 TTCGATCTGTTTCCCTACTGCTTAGGGTGTTAAGATCTGTAAA
1 TTCGGTCTGTTACCCTACTGCTTAGGGGGTTAAGATCTG-CAA
** * * *
2578792 TTTAGCCTGTTACCCTACTGCTTAGGGGTTTAAGGCCATC-GC-C
1 TTCGGTCTGTTACCCTACTGCTTAGGGGGTTAA-G--ATCTGCAA
* * * *
2578835 TTCGATCTGTTTCCCTACTGCTTAGGGTGTTAAGATCTGTAAA
1 TTCGGTCTGTTACCCTACTGCTTAGGGGGTTAAGATCTG-CAA
** * * *
2578878 TTTAGCCTGTTACCCTACTGCTTAGGGGTTTAAGGCCATC-GC-C
1 TTCGGTCTGTTACCCTACTGCTTAGGGGGTTAA-G--ATCTGCAA
* * * *
2578921 TTCGATCTGTTTCCCTACTGCTTAGGGTGTTAAGATCTGTAAA
1 TTCGGTCTGTTACCCTACTGCTTAGGGGGTTAAGATCTG-CAA
** * * *
2578964 TTTAGCCTGTTACCCTACTGCTTAGGGGTTTAAGGCCATC-GC-C
1 TTCGGTCTGTTACCCTACTGCTTAGGGGGTTAA-G--ATCTGCAA
* * * *
2579007 TTCGATCTGTTTCCCTACTGCTTAGGGTGTTAAGATCTGTAAA
1 TTCGGTCTGTTACCCTACTGCTTAGGGGGTTAAGATCTG-CAA
** * * *
2579050 TTTAGCCTGTTACCCTACTGCTTAGGGGTTTAAGGCCATC-GC-C
1 TTCGGTCTGTTACCCTACTGCTTAGGGGGTTAA-G--ATCTGCAA
* * * *
2579093 TTCGATCTGTTTCCCTACTGCTTAGGGTGTTAAGATCTGTAAA
1 TTCGGTCTGTTACCCTACTGCTTAGGGGGTTAAGATCTG-CAA
** * * *
2579136 TTTAGCCTGTTACCCTACTGCTTAGGGGTTTAAGGCCATC-GC-C
1 TTCGGTCTGTTACCCTACTGCTTAGGGGGTTAA-G--ATCTGCAA
* * * * **
2579179 TTCGATCTGTTTCCCTACTGCTTAGGGGGTTAATATCTTTCGTC
1 TTCGGTCTGTTACCCTACTGCTTAGGGGGTTAAGATC-TGC-AA
* * * ** * *
2579223 TTTGATTTG-CCCCACTACTGCTTAGGGGGATAAGATCTGTAA
1 TTCGGTCTGTTACC-CTACTGCTTAGGGGGTTAAGATCTGCAA
* * * * * **
2579265 TCCGGTCTGTTACCCTACTACTTAGGGGTTTAAGACCCTTCGTC
1 TTCGGTCTGTTACCCTACTGCTTAGGGGGTTAAGA-TCTGC-AA
* * * *
2579309 TTCGATCTGTTTCCCTACTGTTTAGGGGGTTAAGATCTGGAAA
1 TTCGGTCTGTTACCCTACTGCTTAGGGGGTTAAGATCT-GCAA
* * ** * **
2579352 TTCAGCCTGTTACCCTACTGCTTA-GGGGTTAAGGCCCTTCGTC
1 TTCGGTCTGTTACCCTACTGCTTAGGGGGTTAA-GATCTGC-AA
* * ***
2579395 TTCGATCTGCT-CCACTACTGCTTAGGGAAATAAGATCTGCAA
1 TTCGGTCTGTTACC-CTACTGCTTAGGGGGTTAAGATCTGCAA
* * *
2579437 TTCGGTCTGTTACCCTACTGCTTAGGGGGTTTAAGACCCTTCATC
1 TTCGGTCTGTTACCCTACTGCTTAGGGGG-TTAAGA-TCTGCA-A
* * * *
2579482 TTCGATCTATTTCCCTACTGCTTAGGGGGTTAAGATCTGGAA
1 TTCGGTCTGTTACCCTACTGCTTAGGGGGTTAAGATCTGCAA
* * * *
2579524 CTTCAGCCCGTTACCCTACTGTTTAGGGGGTTAAG
1 -TTCGGTCTGTTACCCTACTGCTTAGGGGGTTAAG
2579559 GCTTGTGAAT
Statistics
Matches: 553, Mismatches: 169, Indels: 90
0.68 0.21 0.11
Matches are distributed among these distances:
40 15 0.03
41 4 0.01
42 60 0.11
43 350 0.63
44 78 0.14
45 31 0.06
46 15 0.03
ACGTcount: A:0.19, C:0.23, G:0.22, T:0.35
Consensus pattern (42 bp):
TTCGGTCTGTTACCCTACTGCTTAGGGGGTTAAGATCTGCAA
Found at i:2579697 original size:64 final size:64
Alignment explanation
Indices: 2579619--2579742 Score: 178
Period size: 64 Copynumber: 1.9 Consensus size: 64
2579609 GCATCTATGT
* * *
2579619 TTATGCCAAATAATTAGGAT-TCTATGATTGAAATGATTCATATGCTCCTAAATAAATGTGATGC
1 TTATGCCAAATAATTAGGATGT-TATGATCGAAATGAATCAAATGCTCCTAAATAAATGTGATGC
* * *
2579683 TTATGTCAAATAATTAGGATGTTATGATCGAAATGAATCAAATGCTCCTAATTAGATGTG
1 TTATGCCAAATAATTAGGATGTTATGATCGAAATGAATCAAATGCTCCTAAATAAATGTG
2579743 TTATTATATG
Statistics
Matches: 53, Mismatches: 6, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
64 52 0.98
65 1 0.02
ACGTcount: A:0.36, C:0.11, G:0.17, T:0.35
Consensus pattern (64 bp):
TTATGCCAAATAATTAGGATGTTATGATCGAAATGAATCAAATGCTCCTAAATAAATGTGATGC
Found at i:2582130 original size:29 final size:29
Alignment explanation
Indices: 2582097--2582154 Score: 116
Period size: 29 Copynumber: 2.0 Consensus size: 29
2582087 GATAGGCTAC
2582097 ATCTATGTCATCTTCAAAGTGCTGAGATT
1 ATCTATGTCATCTTCAAAGTGCTGAGATT
2582126 ATCTATGTCATCTTCAAAGTGCTGAGATT
1 ATCTATGTCATCTTCAAAGTGCTGAGATT
2582155 CCTTTAGGCT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.28, C:0.17, G:0.17, T:0.38
Consensus pattern (29 bp):
ATCTATGTCATCTTCAAAGTGCTGAGATT
Found at i:2583598 original size:19 final size:19
Alignment explanation
Indices: 2583574--2583619 Score: 60
Period size: 19 Copynumber: 2.4 Consensus size: 19
2583564 ATGAAAGTTT
2583574 AATGCAAATG-AT-GTAATG
1 AATGCAAATGCATAG-AATG
2583592 CAATGCAAATGCATAGAATG
1 -AATGCAAATGCATAGAATG
2583612 AATGCAAA
1 AATGCAAA
2583620 AGAAAGGAAG
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
19 18 0.72
20 6 0.24
21 1 0.04
ACGTcount: A:0.48, C:0.11, G:0.20, T:0.22
Consensus pattern (19 bp):
AATGCAAATGCATAGAATG
Found at i:2586778 original size:27 final size:26
Alignment explanation
Indices: 2586730--2586809 Score: 88
Period size: 26 Copynumber: 3.0 Consensus size: 26
2586720 AAAGTAAACA
*
2586730 ATAAAACAATTTAAAATGAATAATAC
1 ATAAAACAATTTAAAATAAATAATAC
**
2586756 ATAAAACAAGTTTAAAATAAATAATGT
1 ATAAAACAA-TTTAAAATAAATAATAC
* * **
2586783 ATAAAGCATTTTAAAATCTATAATAC
1 ATAAAACAATTTAAAATAAATAATAC
2586809 A
1 A
2586810 CAAAGCAAAA
Statistics
Matches: 44, Mismatches: 9, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
26 23 0.52
27 21 0.48
ACGTcount: A:0.57, C:0.07, G:0.05, T:0.30
Consensus pattern (26 bp):
ATAAAACAATTTAAAATAAATAATAC
Found at i:2587020 original size:17 final size:17
Alignment explanation
Indices: 2586998--2587037 Score: 53
Period size: 17 Copynumber: 2.4 Consensus size: 17
2586988 TGAAATATAT
*
2586998 AATATACAATAACTTAA
1 AATATAAAATAACTTAA
* *
2587015 AATATAAAATAATTTGA
1 AATATAAAATAACTTAA
2587032 AATATA
1 AATATA
2587038 TATATATAAC
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.60, C:0.05, G:0.03, T:0.33
Consensus pattern (17 bp):
AATATAAAATAACTTAA
Found at i:2587263 original size:36 final size:36
Alignment explanation
Indices: 2587219--2587291 Score: 89
Period size: 36 Copynumber: 2.0 Consensus size: 36
2587209 AATAAATAGT
*
2587219 ACATTAAAATAAGTTAG-AAT-AGATATAAAT-AAACA
1 ACATTAAAAT-A-TTAGAAATAACATATAAATGAAACA
2587254 ACATATAAAATATTAGAAATAACATATAAATGAAACA
1 ACAT-TAAAATATTAGAAATAACATATAAATGAAACA
2587291 A
1 A
2587292 AAAAAATAGT
Statistics
Matches: 33, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
34 4 0.12
35 8 0.24
36 15 0.45
37 6 0.18
ACGTcount: A:0.62, C:0.07, G:0.07, T:0.25
Consensus pattern (36 bp):
ACATTAAAATATTAGAAATAACATATAAATGAAACA
Found at i:2588213 original size:33 final size:33
Alignment explanation
Indices: 2588169--2588270 Score: 159
Period size: 33 Copynumber: 3.1 Consensus size: 33
2588159 AGTGTCAGAC
* *
2588169 GCGTGGAGCGTGGTGACCAAGGCTGAGGGGCAT
1 GCGTGGGGCGTGGTGGCCAAGGCTGAGGGGCAT
*
2588202 GCGTGGGGCGTGGTGGCCAAGGCTGTGGGGCAT
1 GCGTGGGGCGTGGTGGCCAAGGCTGAGGGGCAT
* *
2588235 GCGTGGGGCGTGGTGGCCAAGACTGAGGGGTAT
1 GCGTGGGGCGTGGTGGCCAAGGCTGAGGGGCAT
2588268 GCG
1 GCG
2588271 GCGGCTGAAG
Statistics
Matches: 63, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
33 63 1.00
ACGTcount: A:0.14, C:0.18, G:0.52, T:0.17
Consensus pattern (33 bp):
GCGTGGGGCGTGGTGGCCAAGGCTGAGGGGCAT
Found at i:2591990 original size:25 final size:25
Alignment explanation
Indices: 2591960--2592010 Score: 102
Period size: 25 Copynumber: 2.0 Consensus size: 25
2591950 AGTCTCCAAG
2591960 ATAGACTATTTCTTCTCTTTTCTCC
1 ATAGACTATTTCTTCTCTTTTCTCC
2591985 ATAGACTATTTCTTCTCTTTTCTCC
1 ATAGACTATTTCTTCTCTTTTCTCC
2592010 A
1 A
2592011 CTTGGGAGTA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.18, C:0.27, G:0.04, T:0.51
Consensus pattern (25 bp):
ATAGACTATTTCTTCTCTTTTCTCC
Found at i:2592205 original size:21 final size:21
Alignment explanation
Indices: 2592179--2592223 Score: 90
Period size: 21 Copynumber: 2.1 Consensus size: 21
2592169 CTCTCTAAAA
2592179 GTATGTATTTATTAGAAATAT
1 GTATGTATTTATTAGAAATAT
2592200 GTATGTATTTATTAGAAATAT
1 GTATGTATTTATTAGAAATAT
2592221 GTA
1 GTA
2592224 CAACTATATA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.38, C:0.00, G:0.16, T:0.47
Consensus pattern (21 bp):
GTATGTATTTATTAGAAATAT
Found at i:2595244 original size:43 final size:44
Alignment explanation
Indices: 2595187--2595344 Score: 168
Period size: 43 Copynumber: 3.7 Consensus size: 44
2595177 CACATATCAT
*
2595187 TCAATG-CCAATGTCCCAGACGTGGTCTTACATGTAATCACATA
1 TCAATGACCACTGTCCCAGACGTGGTCTTACATGTAATCACATA
* *
2595230 TCGATG-CCACTGTCCCAGACAG-GGTCTTACATG-AATCAAATA
1 TCAATGACCACTGTCCCAGAC-GTGGTCTTACATGTAATCACATA
* * * **
2595272 -CAATGTCGA-TGTCCCAGACATGGTCTTACACATAATCACATA
1 TCAATGACCACTGTCCCAGACGTGGTCTTACATGTAATCACATA
* *
2595314 TCTATGACAAC-GTCCCAGACGTGGTCTTACA
1 TCAATGACCACTGTCCCAGACGTGGTCTTACA
2595345 CAAAAACACA
Statistics
Matches: 96, Mismatches: 13, Indels: 12
0.79 0.11 0.10
Matches are distributed among these distances:
41 23 0.24
42 18 0.19
43 54 0.56
44 1 0.01
ACGTcount: A:0.30, C:0.27, G:0.17, T:0.26
Consensus pattern (44 bp):
TCAATGACCACTGTCCCAGACGTGGTCTTACATGTAATCACATA
Found at i:2596500 original size:15 final size:15
Alignment explanation
Indices: 2596486--2596514 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
2596476 CACAAAAAAT
2596486 TTCACACA-TATAAA
1 TTCACACATTATAAA
2596500 TTCACACATTATAAA
1 TTCACACATTATAAA
2596515 CACAGAAAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 8 0.57
15 6 0.43
ACGTcount: A:0.48, C:0.21, G:0.00, T:0.31
Consensus pattern (15 bp):
TTCACACATTATAAA
Found at i:2608184 original size:12 final size:12
Alignment explanation
Indices: 2608169--2608214 Score: 53
Period size: 12 Copynumber: 4.1 Consensus size: 12
2608159 GGGTGATTCC
2608169 TATAAGGATTGT
1 TATAAGGATTGT
2608181 TATAAGGATTG-
1 TATAAGGATTGT
* *
2608192 --TAAGTATTGC
1 TATAAGGATTGT
2608202 TATAAGGATTGT
1 TATAAGGATTGT
2608214 T
1 T
2608215 TTGAGATCGA
Statistics
Matches: 28, Mismatches: 3, Indels: 6
0.76 0.08 0.16
Matches are distributed among these distances:
9 8 0.29
12 20 0.71
ACGTcount: A:0.33, C:0.02, G:0.24, T:0.41
Consensus pattern (12 bp):
TATAAGGATTGT
Found at i:2608195 original size:21 final size:21
Alignment explanation
Indices: 2608171--2608213 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 21
2608161 GTGATTCCTA
*
2608171 TAAGGATTGTTATAAGGATTG
1 TAAGGATTGCTATAAGGATTG
*
2608192 TAAGTATTGCTATAAGGATTG
1 TAAGGATTGCTATAAGGATTG
2608213 T
1 T
2608214 TTTGAGATCG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.33, C:0.02, G:0.26, T:0.40
Consensus pattern (21 bp):
TAAGGATTGCTATAAGGATTG
Found at i:2612031 original size:28 final size:29
Alignment explanation
Indices: 2611996--2612068 Score: 98
Period size: 28 Copynumber: 2.6 Consensus size: 29
2611986 TGTAAAAATT
*
2611996 GCACTAAGTGTGCGAATC-TAATTAT-TGA
1 GCACTAAGTGTGCGAATCTTAAGTATCT-A
*
2612024 GCACTAAGTGTGC-AAGCTTAAGTATCTA
1 GCACTAAGTGTGCGAATCTTAAGTATCTA
2612052 GCACTAAGTGTGCGAAT
1 GCACTAAGTGTGCGAAT
2612069 TCGATATATA
Statistics
Matches: 39, Mismatches: 3, Indels: 5
0.83 0.06 0.11
Matches are distributed among these distances:
27 3 0.08
28 33 0.85
29 3 0.08
ACGTcount: A:0.32, C:0.16, G:0.23, T:0.29
Consensus pattern (29 bp):
GCACTAAGTGTGCGAATCTTAAGTATCTA
Found at i:2614704 original size:41 final size:41
Alignment explanation
Indices: 2614635--2614716 Score: 101
Period size: 41 Copynumber: 2.0 Consensus size: 41
2614625 AATCTGATTC
* * *
2614635 AATACAATAAGATTTCGTCTGCAATTTACAATAGCGTCGTG
1 AATACAATAAGATTTCGTCTACAATTTACAACAACGTCGTG
* * * *
2614676 AATACAATAAGCTTTTGTCTATAGTTTACAACAACGTCGTG
1 AATACAATAAGATTTCGTCTACAATTTACAACAACGTCGTG
2614717 TAAAGTTAGC
Statistics
Matches: 34, Mismatches: 7, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
41 34 1.00
ACGTcount: A:0.34, C:0.17, G:0.16, T:0.33
Consensus pattern (41 bp):
AATACAATAAGATTTCGTCTACAATTTACAACAACGTCGTG
Found at i:2626060 original size:11 final size:12
Alignment explanation
Indices: 2626035--2626063 Score: 51
Period size: 11 Copynumber: 2.5 Consensus size: 12
2626025 GGACCAAATT
2626035 GAAATTGAGATA
1 GAAATTGAGATA
2626047 GAAATTGA-ATA
1 GAAATTGAGATA
2626058 GAAATT
1 GAAATT
2626064 AAATTATTTA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
11 9 0.53
12 8 0.47
ACGTcount: A:0.52, C:0.00, G:0.21, T:0.28
Consensus pattern (12 bp):
GAAATTGAGATA
Found at i:2626426 original size:16 final size:16
Alignment explanation
Indices: 2626366--2626426 Score: 50
Period size: 16 Copynumber: 3.6 Consensus size: 16
2626356 TGGAAAATGT
* *
2626366 ATTTAATTGAATTGTG
1 ATTTAATTGAAATGAG
* *
2626382 ATTAAATTGAAAGGTATG
1 ATTTAATTGAAATG-A-G
*
2626400 TTTTGAATTGAAATGAG
1 ATTT-AATTGAAATGAG
2626417 ATTTAATTGA
1 ATTTAATTGA
2626427 GAAATGATTT
Statistics
Matches: 34, Mismatches: 8, Indels: 6
0.71 0.17 0.12
Matches are distributed among these distances:
16 17 0.50
17 4 0.12
18 4 0.12
19 9 0.26
ACGTcount: A:0.38, C:0.00, G:0.20, T:0.43
Consensus pattern (16 bp):
ATTTAATTGAAATGAG
Found at i:2626873 original size:9 final size:9
Alignment explanation
Indices: 2626859--2626944 Score: 129
Period size: 9 Copynumber: 9.6 Consensus size: 9
2626849 TTAAGTATAA
2626859 AATTAACCG
1 AATTAACCG
2626868 AATTAACCG
1 AATTAACCG
2626877 AATTAACCG
1 AATTAACCG
*
2626886 AATTAATCG
1 AATTAACCG
*
2626895 AATTAATCG
1 AATTAACCG
2626904 AATTAACCG
1 AATTAACCG
2626913 AATT-ACTCG
1 AATTAAC-CG
*
2626922 AATTACCCG
1 AATTAACCG
2626931 AATTAACCG
1 AATTAACCG
2626940 AATTA
1 AATTA
2626945 TTTGTATAAA
Statistics
Matches: 71, Mismatches: 4, Indels: 4
0.90 0.05 0.05
Matches are distributed among these distances:
8 2 0.03
9 68 0.96
10 1 0.01
ACGTcount: A:0.43, C:0.20, G:0.10, T:0.27
Consensus pattern (9 bp):
AATTAACCG
Found at i:2627060 original size:18 final size:18
Alignment explanation
Indices: 2627023--2627057 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
2627013 ATTTTTATGA
2627023 TTGGGTTGGGTAATTTGG
1 TTGGGTTGGGTAATTTGG
2627041 TTGGGTTGGGT-ATTTGG
1 TTGGGTTGGGTAATTTGG
2627058 GTTAATATAT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 6 0.35
18 11 0.65
ACGTcount: A:0.09, C:0.00, G:0.46, T:0.46
Consensus pattern (18 bp):
TTGGGTTGGGTAATTTGG
Found at i:2629842 original size:59 final size:59
Alignment explanation
Indices: 2629770--2629944 Score: 350
Period size: 59 Copynumber: 3.0 Consensus size: 59
2629760 CCAAGTGACT
2629770 AAGTTTCCTCCCACAAGAGTACAATAACCCGTTGTAGACCTTCTATCATCAAGAGAGTA
1 AAGTTTCCTCCCACAAGAGTACAATAACCCGTTGTAGACCTTCTATCATCAAGAGAGTA
2629829 AAGTTTCCTCCCACAAGAGTACAATAACCCGTTGTAGACCTTCTATCATCAAGAGAGTA
1 AAGTTTCCTCCCACAAGAGTACAATAACCCGTTGTAGACCTTCTATCATCAAGAGAGTA
2629888 AAGTTTCCTCCCACAAGAGTACAATAACCCGTTGTAGACCTTCTATCATCAAGAGAG
1 AAGTTTCCTCCCACAAGAGTACAATAACCCGTTGTAGACCTTCTATCATCAAGAGAG
2629945 CCAACCCAAT
Statistics
Matches: 116, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
59 116 1.00
ACGTcount: A:0.34, C:0.26, G:0.15, T:0.25
Consensus pattern (59 bp):
AAGTTTCCTCCCACAAGAGTACAATAACCCGTTGTAGACCTTCTATCATCAAGAGAGTA
Found at i:2637105 original size:17 final size:17
Alignment explanation
Indices: 2637083--2637115 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
2637073 TAACATTTTA
2637083 AATTTATATT-TATATTT
1 AATTTA-ATTGTATATTT
2637100 AATTTAATTGTATATT
1 AATTTAATTGTATATT
2637116 AACGTTGACT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 3 0.20
17 12 0.80
ACGTcount: A:0.36, C:0.00, G:0.03, T:0.61
Consensus pattern (17 bp):
AATTTAATTGTATATTT
Found at i:2638703 original size:40 final size:38
Alignment explanation
Indices: 2638580--2638718 Score: 113
Period size: 40 Copynumber: 3.6 Consensus size: 38
2638570 CCTTTGGTGG
* * * *
2638580 CTTTAGCGGTGCTTTCTAAAAACGCCGCTAAAGATCGAGT
1 CTTTAGCGGCGCTTTTTAAAAACGCCGCTAATG-TAGA-T
* * * *
2638620 -ATTAGCGGCGCTGTTTTAAAAACGCCACTATATGTACAC
1 CTTTAGCGGCGCT-TTTTAAAAACGCCGCTA-ATGTAGAT
*
2638659 CTTTAGCGGCGCTTTTTAGAAAACGCCGCTAATGCTTGAT
1 CTTTAGCGGCGCTTTTTA-AAAACGCCGCTAATG-TAGAT
*
2638699 CTTTAGTGGCG--TTTTAAAAA
1 CTTTAGCGGCGCTTTTTAAAAA
2638719 TACGTCGCAA
Statistics
Matches: 80, Mismatches: 14, Indels: 13
0.75 0.13 0.12
Matches are distributed among these distances:
37 4 0.05
38 5 0.06
39 18 0.22
40 51 0.64
41 2 0.03
ACGTcount: A:0.27, C:0.21, G:0.21, T:0.31
Consensus pattern (38 bp):
CTTTAGCGGCGCTTTTTAAAAACGCCGCTAATGTAGAT
Found at i:2639049 original size:49 final size:49
Alignment explanation
Indices: 2638996--2639094 Score: 198
Period size: 49 Copynumber: 2.0 Consensus size: 49
2638986 AATTGTAAAT
2638996 GAGATAGTATTAATTTTAAAATATTGAATTAATTATCATTATATTTTAG
1 GAGATAGTATTAATTTTAAAATATTGAATTAATTATCATTATATTTTAG
2639045 GAGATAGTATTAATTTTAAAATATTGAATTAATTATCATTATATTTTAG
1 GAGATAGTATTAATTTTAAAATATTGAATTAATTATCATTATATTTTAG
2639094 G
1 G
2639095 GTTTACGATA
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
49 50 1.00
ACGTcount: A:0.40, C:0.02, G:0.11, T:0.46
Consensus pattern (49 bp):
GAGATAGTATTAATTTTAAAATATTGAATTAATTATCATTATATTTTAG
Found at i:2639209 original size:28 final size:29
Alignment explanation
Indices: 2639173--2639312 Score: 127
Period size: 28 Copynumber: 5.1 Consensus size: 29
2639163 TAGAGATTAT
**
2639173 GGTTTATGGTTTATGGGTTAAAAGTT-AG
1 GGTTTATGGTTTATGGGTTAAGGGTTAAG
2639201 GGTTTATGGTTTAT--G----GGGTT-AG
1 GGTTTATGGTTTATGGGTTAAGGGTTAAG
* *
2639223 GGTTTAAGGTTTAGGGGTTAAGGGTTAAG
1 GGTTTATGGTTTATGGGTTAAGGGTTAAG
*
2639252 GGTTTAT-GTTTAGGGGTTAAGGGTTAAG
1 GGTTTATGGTTTATGGGTTAAGGGTTAAG
* * * * *
2639280 GGTTTATGTTTTATTGTTTAAGGTTTAGG
1 GGTTTATGGTTTATGGGTTAAGGGTTAAG
2639309 GGTT
1 GGTT
2639313 AGGGGCTAGG
Statistics
Matches: 93, Mismatches: 11, Indels: 15
0.78 0.09 0.13
Matches are distributed among these distances:
22 17 0.18
24 1 0.01
26 1 0.01
28 47 0.51
29 27 0.29
ACGTcount: A:0.20, C:0.00, G:0.36, T:0.44
Consensus pattern (29 bp):
GGTTTATGGTTTATGGGTTAAGGGTTAAG
Found at i:2639224 original size:22 final size:22
Alignment explanation
Indices: 2639196--2639259 Score: 87
Period size: 22 Copynumber: 2.9 Consensus size: 22
2639186 TGGGTTAAAA
*
2639196 GTTAGGGTTTATGGTTTATGGG
1 GTTAGGGTTTAAGGTTTATGGG
2639218 GTTAGGGTTTAAGGTTTA-GGG
1 GTTAGGGTTTAAGGTTTATGGG
2639239 GTTAAGGG-TTAAGGGTTTATG
1 GTT-AGGGTTTAA-GGTTTATG
2639260 TTTAGGGGTT
Statistics
Matches: 38, Mismatches: 1, Indels: 5
0.86 0.02 0.11
Matches are distributed among these distances:
21 10 0.26
22 27 0.71
23 1 0.03
ACGTcount: A:0.19, C:0.00, G:0.41, T:0.41
Consensus pattern (22 bp):
GTTAGGGTTTAAGGTTTATGGG
Found at i:2639233 original size:29 final size:30
Alignment explanation
Indices: 2639141--2639257 Score: 84
Period size: 29 Copynumber: 4.1 Consensus size: 30
2639131 GTTACTATTG
* * *
2639141 TAAGGTTTAT-GTATTAT-GGATTTAGAGAT
1 TAAGGTTTATGGT-TTATGGGGTTAAGAGTT
* *
2639170 TATGGTTTATGGTTTAT-GGGTTAAAAG-T
1 TAAGGTTTATGGTTTATGGGGTTAAGAGTT
* *
2639198 TAGGGTTTATGGTTTATGGGGTT-AGGGTT
1 TAAGGTTTATGGTTTATGGGGTTAAGAGTT
* * * *
2639227 TAAGGTTTAGGGGTTA-AGGGTTAAGGGTT
1 TAAGGTTTATGGTTTATGGGGTTAAGAGTT
2639256 TA
1 TA
2639258 TGTTTAGGGG
Statistics
Matches: 73, Mismatches: 11, Indels: 8
0.79 0.12 0.09
Matches are distributed among these distances:
28 24 0.33
29 47 0.64
30 2 0.03
ACGTcount: A:0.24, C:0.00, G:0.33, T:0.43
Consensus pattern (30 bp):
TAAGGTTTATGGTTTATGGGGTTAAGAGTT
Found at i:2639335 original size:7 final size:7
Alignment explanation
Indices: 2639197--2639336 Score: 84
Period size: 7 Copynumber: 19.6 Consensus size: 7
2639187 GGGTTAAAAG
2639197 TTAGGGT
1 TTAGGGT
*
2639204 TTATGGT
1 TTAGGGT
*
2639211 TTATGGGG
1 TTA-GGGT
2639219 TTAGGGT
1 TTAGGGT
*
2639226 TTAAGGT
1 TTAGGGT
2639233 TTAGGGGT
1 TTA-GGGT
*
2639241 TAAGGGT
1 TTAGGGT
*
2639248 TAAGGGT
1 TTAGGGT
*
2639255 TTA-TGT
1 TTAGGGT
2639261 TTAGGGGT
1 TTA-GGGT
*
2639269 TAAGGGT
1 TTAGGGT
*
2639276 TAAGGGT
1 TTAGGGT
* *
2639283 TTATGTT
1 TTAGGGT
**
2639290 TTATTGT
1 TTAGGGT
*
2639297 TTAAGGT
1 TTAGGGT
*
2639304 TTAGGGG
1 TTAGGGT
*
2639311 TTAGGGG
1 TTAGGGT
* *
2639318 CTAGGAAT
1 TTAGG-GT
2639326 TTAGGGT
1 TTAGGGT
2639333 TTAG
1 TTAG
2639337 ATTAATTAGT
Statistics
Matches: 103, Mismatches: 25, Indels: 10
0.75 0.18 0.07
Matches are distributed among these distances:
6 5 0.05
7 80 0.78
8 18 0.17
ACGTcount: A:0.20, C:0.01, G:0.38, T:0.41
Consensus pattern (7 bp):
TTAGGGT
Found at i:2646407 original size:43 final size:43
Alignment explanation
Indices: 2646360--2646458 Score: 162
Period size: 43 Copynumber: 2.3 Consensus size: 43
2646350 GGTCATAATT
*
2646360 TTTAGCGGCGTTTGTAGGAAAAGCGCCGCTAAAAGTCATGACC
1 TTTAGCGGCGTTTGTAGGAAAAGCGCCGCTAAAAGCCATGACC
* * *
2646403 TTTAGCGGCGTTTGTGGGATAAGCGCCGCTAAAGGCCATGACC
1 TTTAGCGGCGTTTGTAGGAAAAGCGCCGCTAAAAGCCATGACC
2646446 TTTAGCGGCGTTT
1 TTTAGCGGCGTTT
2646459 TTTTTCATAA
Statistics
Matches: 52, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
43 52 1.00
ACGTcount: A:0.22, C:0.21, G:0.30, T:0.26
Consensus pattern (43 bp):
TTTAGCGGCGTTTGTAGGAAAAGCGCCGCTAAAAGCCATGACC
Found at i:2648621 original size:177 final size:177
Alignment explanation
Indices: 2648300--2648647 Score: 491
Period size: 177 Copynumber: 2.0 Consensus size: 177
2648290 AGCCAGTGAT
*
2648300 TAAAACCTGCTCCATAGCCGATACTTAGAGATAAGACTCACCATCTTCGATCTGCTCCATAGCCG
1 TAAAACCTGCTCCATAGCCGATACATAGAGATAAGACTCACCATCTTCGATCTGCTCCATAGCCG
** * * * *
2648365 ATACATGGAGATAAGATCTGTAATTTCAGTCTACTTCCTTGCTACCTCAGGAAGATAAAACTTGT
66 ATACATAAAAATAAGATCTATAATTTCAATCTACTTCCTTGCTACCTCAGGAAGATAAAACTTGC
* * * *
2648430 ATCTTCAACCTGCTCTC-TTGCTACCTCAAAGAGATAAGGCTGGTGGC
131 ATATACAACCTGCTC-CACTGCAACCTCAAAGAGATAAGGCTGGTGGC
* * * *
2648477 TAAAATCTGCTCCATAGCCGATACATGGAGATAAGATTCGCCATCTTCGATCTGCTCCATAGCCG
1 TAAAACCTGCTCCATAGCCGATACATAGAGATAAGACTCACCATCTTCGATCTGCTCCATAGCCG
* *
2648542 ATACTTAAAAATAAGATCTATAATTTCAATCTACTTCCTTGCTACCTCAGGAAGATAAGACTTGC
66 ATACATAAAAATAAGATCTATAATTTCAATCTACTTCCTTGCTACCTCAGGAAGATAAAACTTGC
* * * *
2648607 ATATAGAGCCTGCTCCACTGCAACTTCAAGGAGATAAGGCT
131 ATATACAACCTGCTCCACTGCAACCTCAAAGAGATAAGGCT
2648648 TGTCATTTGA
Statistics
Matches: 149, Mismatches: 21, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
176 1 0.01
177 148 0.99
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (177 bp):
TAAAACCTGCTCCATAGCCGATACATAGAGATAAGACTCACCATCTTCGATCTGCTCCATAGCCG
ATACATAAAAATAAGATCTATAATTTCAATCTACTTCCTTGCTACCTCAGGAAGATAAAACTTGC
ATATACAACCTGCTCCACTGCAACCTCAAAGAGATAAGGCTGGTGGC
Found at i:2648643 original size:44 final size:42
Alignment explanation
Indices: 2648594--2648730 Score: 116
Period size: 44 Copynumber: 3.2 Consensus size: 42
2648584 TACCTCAGGA
2648594 AGATAAGACTTGCATATAGAGCCTGCTCCACTGCAACTTCAAGG
1 AGATAAGACTTGCATAT-GA-CCTGCTCCACTGCAACTTCAAGG
* * * ** * *
2648638 AGATAAGGCTTGTCATTTGAACCTACTCCACTATAACTTTATGG
1 AGATAAGACTTG-CATATG-ACCTGCTCCACTGCAACTTCAAGG
** * *
2648682 AGATAAGGTTTGC-TATGATCTGCTCTACTGCAACTTC-AGAG
1 AGATAAGACTTGCATATGACCTGCTCCACTGCAACTTCAAG-G
2648723 AGATAAGA
1 AGATAAGA
2648731 TCTATTTACT
Statistics
Matches: 73, Mismatches: 17, Indels: 9
0.74 0.17 0.09
Matches are distributed among these distances:
40 1 0.01
41 22 0.30
42 3 0.04
43 1 0.01
44 41 0.56
45 5 0.07
ACGTcount: A:0.31, C:0.20, G:0.20, T:0.28
Consensus pattern (42 bp):
AGATAAGACTTGCATATGACCTGCTCCACTGCAACTTCAAGG
Found at i:2654229 original size:16 final size:17
Alignment explanation
Indices: 2654193--2654229 Score: 74
Period size: 17 Copynumber: 2.2 Consensus size: 17
2654183 CTTTCCAAGT
2654193 CCCCTTCCAGGCAATGC
1 CCCCTTCCAGGCAATGC
2654210 CCCCTTCCAGGCAATGC
1 CCCCTTCCAGGCAATGC
2654227 CCC
1 CCC
2654230 ATTTCCTACT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.16, C:0.51, G:0.16, T:0.16
Consensus pattern (17 bp):
CCCCTTCCAGGCAATGC
Found at i:2661074 original size:57 final size:57
Alignment explanation
Indices: 2660986--2661100 Score: 212
Period size: 57 Copynumber: 2.0 Consensus size: 57
2660976 TACATCATGC
* *
2660986 CAATGCTGACATTAATATTCAAAGGCTAATAAATTAAAAGCAAATTTGAATGAAATA
1 CAATGCCGACATTAATATTCAAAGGCTAATAAATTAAAACCAAATTTGAATGAAATA
2661043 CAATGCCGACATTAATATTCAAAGGCTAATAAATTAAAACCAAATTTGAATGAAATA
1 CAATGCCGACATTAATATTCAAAGGCTAATAAATTAAAACCAAATTTGAATGAAATA
2661100 C
1 C
2661101 CAAGCATAAA
Statistics
Matches: 56, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
57 56 1.00
ACGTcount: A:0.49, C:0.13, G:0.11, T:0.27
Consensus pattern (57 bp):
CAATGCCGACATTAATATTCAAAGGCTAATAAATTAAAACCAAATTTGAATGAAATA
Found at i:2662325 original size:201 final size:201
Alignment explanation
Indices: 2662000--2662385 Score: 772
Period size: 201 Copynumber: 1.9 Consensus size: 201
2661990 AATTCCCCCC
2662000 CCCCCCTAATGAGTAGTGGCCGGCCATGACAAGGAAGGATGGGTAAAACATGTCATGAAACATGT
1 CCCCCCTAATGAGTAGTGGCCGGCCATGACAAGGAAGGATGGGTAAAACATGTCATGAAACATGT
2662065 TTTGTTAGTGGAAGAATAAAATAAGGAGTATGGGTAATAAAGAAATGGAAAACAAAAGAAAAAAA
66 TTTGTTAGTGGAAGAATAAAATAAGGAGTATGGGTAATAAAGAAATGGAAAACAAAAGAAAAAAA
2662130 AATGTGTGTGTAGTGTTTGTCCCCCCATTGCCGTGAGCTAAAGAAGAGAAAGGGGACTTGCATGT
131 AATGTGTGTGTAGTGTTTGTCCCCCCATTGCCGTGAGCTAAAGAAGAGAAAGGGGACTTGCATGT
2662195 CAAATT
196 CAAATT
2662201 CCCCCCTAATGAGTAGTGGCCGGCCATGACAAGGAAGGATGGGTAAAACATGTCATGAAACATGT
1 CCCCCCTAATGAGTAGTGGCCGGCCATGACAAGGAAGGATGGGTAAAACATGTCATGAAACATGT
2662266 TTTGTTAGTGGAAGAATAAAATAAGGAGTATGGGTAATAAAGAAATGGAAAACAAAAGAAAAAAA
66 TTTGTTAGTGGAAGAATAAAATAAGGAGTATGGGTAATAAAGAAATGGAAAACAAAAGAAAAAAA
2662331 AATGTGTGTGTAGTGTTTGTCCCCCCATTGCCGTGAGCTAAAGAAGAGAAAGGGG
131 AATGTGTGTGTAGTGTTTGTCCCCCCATTGCCGTGAGCTAAAGAAGAGAAAGGGG
2662386 GGATTTTGTT
Statistics
Matches: 185, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
201 185 1.00
ACGTcount: A:0.38, C:0.13, G:0.27, T:0.22
Consensus pattern (201 bp):
CCCCCCTAATGAGTAGTGGCCGGCCATGACAAGGAAGGATGGGTAAAACATGTCATGAAACATGT
TTTGTTAGTGGAAGAATAAAATAAGGAGTATGGGTAATAAAGAAATGGAAAACAAAAGAAAAAAA
AATGTGTGTGTAGTGTTTGTCCCCCCATTGCCGTGAGCTAAAGAAGAGAAAGGGGACTTGCATGT
CAAATT
Found at i:2663645 original size:39 final size:40
Alignment explanation
Indices: 2663494--2663663 Score: 198
Period size: 40 Copynumber: 4.3 Consensus size: 40
2663484 GGACTAAGAT
* * *
2663494 CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTACTAAATCCGGGTTAAGTC
* * *
2663534 CCGAGGGCATTCGTGCGAGTTATTAAAGCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTACTAAATCCGGGTTAAGTC
** * *
2663574 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTACGAC
1 CCGAAGGCATTCGTGCGAGTTACTAAATCCGGGTTAAGTC
* * * * *
2663614 CCGAAGGCA-TGGTGTGAGTTACTAAAACCGGGCTATGTC
1 CCGAAGGCATTCGTGCGAGTTACTAAATCCGGGTTAAGTC
2663653 CCGAAGGCATT
1 CCGAAGGCATT
2663664 TGAACGAGGA
Statistics
Matches: 110, Mismatches: 19, Indels: 2
0.84 0.15 0.02
Matches are distributed among these distances:
39 31 0.28
40 79 0.72
ACGTcount: A:0.24, C:0.22, G:0.30, T:0.24
Consensus pattern (40 bp):
CCGAAGGCATTCGTGCGAGTTACTAAATCCGGGTTAAGTC
Found at i:2663683 original size:79 final size:80
Alignment explanation
Indices: 2663516--2663698 Score: 192
Period size: 79 Copynumber: 2.3 Consensus size: 80
2663506 GTGCGAGATA
* * * * *
2663516 CTAAATCCGGGTTAAGTCCCGAGGGCATTCGTGCGAGTTATTAAAGCCGGGTTAAGTCCCGAAGG
1 CTAAATCCGGGTTAAGACCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGG
** **
2663581 CATTCGTGCGAGTTG
66 CATTCGAACGAGGAG
* * * * *
2663596 TTAAATCCGGGTTACGACCCGAAGGCA-TGGTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGG
1 CTAAATCCGGGTTAAGACCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGG
*
2663660 CATTTGAACGAGGAG
66 CATTCGAACGAGGAG
*
2663675 CTATATCC-GGTTAA-ATCCCGAAGG
1 CTAAATCCGGGTTAAGA-CCCGAAGG
2663699 TACGTGAATT
Statistics
Matches: 84, Mismatches: 18, Indels: 4
0.79 0.17 0.04
Matches are distributed among these distances:
77 1 0.01
78 13 0.15
79 47 0.56
80 23 0.27
ACGTcount: A:0.26, C:0.21, G:0.30, T:0.23
Consensus pattern (80 bp):
CTAAATCCGGGTTAAGACCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGG
CATTCGAACGAGGAG
Found at i:2669812 original size:12 final size:12
Alignment explanation
Indices: 2669795--2669822 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
2669785 ACCACTAGCA
2669795 CACTCCACACGC
1 CACTCCACACGC
2669807 CACTCCACACGC
1 CACTCCACACGC
2669819 CACT
1 CACT
2669823 ACCCAGTAGA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.25, C:0.57, G:0.07, T:0.11
Consensus pattern (12 bp):
CACTCCACACGC
Found at i:2677633 original size:41 final size:41
Alignment explanation
Indices: 2677575--2677801 Score: 314
Period size: 41 Copynumber: 5.5 Consensus size: 41
2677565 TCAGTGATAT
* *
2677575 TCAGGCTTTATTTCCTAGCAGGCTTTGTGCCGGTGTATTAAA
1 TCAGGC-TTATTGCCTAGCAGGCTTTGTGCCGGTGTATTATA
* *
2677617 TCAGGCTTATTGCCTAGCAGGCTTTGTGCCAGTGTATTAAA
1 TCAGGCTTATTGCCTAGCAGGCTTTGTGCCGGTGTATTATA
*
2677658 TCAAGCTTATTGCCTAGCAGGCTTTGTGCCGGTGTATTATA
1 TCAGGCTTATTGCCTAGCAGGCTTTGTGCCGGTGTATTATA
* *
2677699 TCATGCTTATTGCCTAGCAGGCTTTATATGCCGGTGTATTATA
1 TCAGGCTTATTGCCTAGCAGGC-TT-TGTGCCGGTGTATTATA
* *
2677742 TCAGGCTTATTGCCTAGCAGCCTCTGTGCCGGTGTATTATA
1 TCAGGCTTATTGCCTAGCAGGCTTTGTGCCGGTGTATTATA
2677783 -CTAGGCTT-TATGCCTAGCA
1 TC-AGGCTTAT-TGCCTAGCA
2677802 AATTTTATGT
Statistics
Matches: 170, Mismatches: 11, Indels: 9
0.89 0.06 0.05
Matches are distributed among these distances:
40 2 0.01
41 123 0.72
42 9 0.05
43 36 0.21
ACGTcount: A:0.20, C:0.21, G:0.23, T:0.36
Consensus pattern (41 bp):
TCAGGCTTATTGCCTAGCAGGCTTTGTGCCGGTGTATTATA
Found at i:2677778 original size:84 final size:82
Alignment explanation
Indices: 2677575--2677801 Score: 314
Period size: 84 Copynumber: 2.7 Consensus size: 82
2677565 TCAGTGATAT
* *
2677575 TCAGGCTTTATTTCCTAGCAGGCTTTGTGCCGGTGTATTAAATCAGGCTTATTGCCTAGCAGGCT
1 TCAGGC-TTATTGCCTAGCAGGCTTTGTGCCGGTGTATTATATCAGGCTTATTGCCTAGCAGGCT
*
2677640 TTGTGCCAGTGTATTAAA
65 TTATGCCAGTGTATTAAA
* *
2677658 TCAAGCTTATTGCCTAGCAGGCTTTGTGCCGGTGTATTATATCATGCTTATTGCCTAGCAGGCTT
1 TCAGGCTTATTGCCTAGCAGGCTTTGTGCCGGTGTATTATATCAGGCTTATTGCCTAGCAGGC-T
* *
2677723 TATATGCCGGTGTATTATA
65 T-TATGCCAGTGTATTAAA
* *
2677742 TCAGGCTTATTGCCTAGCAGCCTCTGTGCCGGTGTATTATA-CTAGGCTT-TATGCCTAGCA
1 TCAGGCTTATTGCCTAGCAGGCTTTGTGCCGGTGTATTATATC-AGGCTTAT-TGCCTAGCA
2677802 AATTTTATGT
Statistics
Matches: 129, Mismatches: 11, Indels: 7
0.88 0.07 0.05
Matches are distributed among these distances:
82 54 0.42
83 9 0.07
84 66 0.51
ACGTcount: A:0.20, C:0.21, G:0.23, T:0.36
Consensus pattern (82 bp):
TCAGGCTTATTGCCTAGCAGGCTTTGTGCCGGTGTATTATATCAGGCTTATTGCCTAGCAGGCTT
TATGCCAGTGTATTAAA
Found at i:2681247 original size:31 final size:31
Alignment explanation
Indices: 2681209--2681289 Score: 126
Period size: 31 Copynumber: 2.6 Consensus size: 31
2681199 CGTTTAACGG
*
2681209 TCACTGGGCCGAAGCCTTTTCATAAATTATA
1 TCACTGGGCCGAAGCCTTTTCATAAATCATA
2681240 TCACTGGGCCGAAGCCTTTTCATAAATCATA
1 TCACTGGGCCGAAGCCTTTTCATAAATCATA
* * *
2681271 TCATTGGGCCAAATCCTTT
1 TCACTGGGCCGAAGCCTTT
2681290 ACTGTAAACG
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
31 46 1.00
ACGTcount: A:0.27, C:0.25, G:0.16, T:0.32
Consensus pattern (31 bp):
TCACTGGGCCGAAGCCTTTTCATAAATCATA
Found at i:2681360 original size:42 final size:42
Alignment explanation
Indices: 2681313--2681404 Score: 132
Period size: 42 Copynumber: 2.2 Consensus size: 42
2681303 TGGCCCTTAG
* * * *
2681313 GCCCATTTCAATATCACATGTAATGTC-AATGGATGTATGCAA
1 GCCCATTTCAATATCACATGAAAT-ACGAATGAATATATGCAA
2681355 GCCCATTTCAATATCACATGAAATACGAATGAATATATGCAA
1 GCCCATTTCAATATCACATGAAATACGAATGAATATATGCAA
2681397 GCCCATTT
1 GCCCATTT
2681405 GGGGAGACTA
Statistics
Matches: 45, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
41 1 0.02
42 44 0.98
ACGTcount: A:0.36, C:0.21, G:0.14, T:0.29
Consensus pattern (42 bp):
GCCCATTTCAATATCACATGAAATACGAATGAATATATGCAA
Found at i:2681619 original size:26 final size:26
Alignment explanation
Indices: 2681549--2681748 Score: 307
Period size: 26 Copynumber: 7.8 Consensus size: 26
2681539 CCTCTTTAAT
**
2681549 AACTGGGGCA-AAGCCCTTTTCGGTA
1 AACTGGGGCATAAGCCCTTTTCAATA
*
2681574 AACTGGGGTA-AAGCCCTTTTCAATA
1 AACTGGGGCATAAGCCCTTTTCAATA
2681599 AACTGGGGCATAAGCCCTTTTCAATA
1 AACTGGGGCATAAGCCCTTTTCAATA
**
2681625 AACTGGGGCATAAGCCC-TTTCGGTA
1 AACTGGGGCATAAGCCCTTTTCAATA
*
2681650 AACTAGGGCATAAGCCCTTTTCAATA
1 AACTGGGGCATAAGCCCTTTTCAATA
**
2681676 AACTGGGGCATAAGCCCTTTTCGGTA
1 AACTGGGGCATAAGCCCTTTTCAATA
2681702 AACTGGGGCATAAGCCCTTTTCAATA
1 AACTGGGGCATAAGCCCTTTTCAATA
2681728 AACTGGGGCATAAGCCCTTTT
1 AACTGGGGCATAAGCCCTTTT
2681749 GCACTTCCTC
Statistics
Matches: 159, Mismatches: 14, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
25 53 0.33
26 106 0.67
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.27
Consensus pattern (26 bp):
AACTGGGGCATAAGCCCTTTTCAATA
Found at i:2681720 original size:52 final size:52
Alignment explanation
Indices: 2681549--2681748 Score: 325
Period size: 51 Copynumber: 3.9 Consensus size: 52
2681539 CCTCTTTAAT
** * **
2681549 AACTGGGGCA-AAGCCCTTTTCGGTAAACTGGGGTA-AAGCCCTTTTCAATA
1 AACTGGGGCATAAGCCCTTTTCAATAAACTGGGGCATAAGCCCTTTTCGGTA
2681599 AACTGGGGCATAAGCCCTTTTCAATAAACTGGGGCATAAGCCC-TTTCGGTA
1 AACTGGGGCATAAGCCCTTTTCAATAAACTGGGGCATAAGCCCTTTTCGGTA
*
2681650 AACTAGGGCATAAGCCCTTTTCAATAAACTGGGGCATAAGCCCTTTTCGGTA
1 AACTGGGGCATAAGCCCTTTTCAATAAACTGGGGCATAAGCCCTTTTCGGTA
2681702 AACTGGGGCATAAGCCCTTTTCAATAAACTGGGGCATAAGCCCTTTT
1 AACTGGGGCATAAGCCCTTTTCAATAAACTGGGGCATAAGCCCTTTT
2681749 GCACTTCCTC
Statistics
Matches: 140, Mismatches: 7, Indels: 4
0.93 0.05 0.03
Matches are distributed among these distances:
50 10 0.07
51 70 0.50
52 60 0.43
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.27
Consensus pattern (52 bp):
AACTGGGGCATAAGCCCTTTTCAATAAACTGGGGCATAAGCCCTTTTCGGTA
Found at i:2682580 original size:27 final size:27
Alignment explanation
Indices: 2682550--2682614 Score: 69
Period size: 27 Copynumber: 2.4 Consensus size: 27
2682540 GGGCATATTC
2682550 GTCATTTTACCATACAAGGG-TATTACA
1 GTCATTTTACCATACAAGGGCT-TTACA
* * * *
2682577 GTCACTTTACCCTACAGGGGCTTTACG
1 GTCATTTTACCATACAAGGGCTTTACA
*
2682604 GTCTTTTTACC
1 GTCATTTTACC
2682615 TATTAGGGGT
Statistics
Matches: 31, Mismatches: 6, Indels: 2
0.79 0.15 0.05
Matches are distributed among these distances:
27 30 0.97
28 1 0.03
ACGTcount: A:0.23, C:0.25, G:0.17, T:0.35
Consensus pattern (27 bp):
GTCATTTTACCATACAAGGGCTTTACA
Found at i:2682698 original size:27 final size:27
Alignment explanation
Indices: 2682645--2683004 Score: 280
Period size: 27 Copynumber: 13.3 Consensus size: 27
2682635 TTTCATTCTA
* * * *
2682645 CAAGGGTGTTTTGGTAAATCTACAAAC
1 CAAGGGTATTTTGGTAATTTTACAAAT
* ** *
2682672 CAAGGGTATTTTAGTAATTTTGTAAAC
1 CAAGGGTATTTTGGTAATTTTACAAAT
* * *
2682699 CAATGGTATTTCT-ATAAATTTTAGAAAGT
1 CAAGGGTATTT-TGGT-AATTTTACAAA-T
* * **
2682728 CAAGAGTATTTTTGTAATTTTGTAAAT
1 CAAGGGTATTTTGGTAATTTTACAAAT
* * ** *
2682755 TAGGGGTATTTCAGTAATTTTACCAAT
1 CAAGGGTATTTTGGTAATTTTACAAAT
** *
2682782 TGAGGGTATTTCGGTAATTTTACAAA-
1 CAAGGGTATTTTGGTAATTTTACAAAT
*
2682808 CTAGTGGTATTTTGGTAATTTTACAAA-
1 CAAG-GGTATTTTGGTAATTTTACAAAT
*
2682835 CTAGGGGTATTTTGGTAATTTTACAAAT
1 C-AAGGGTATTTTGGTAATTTTACAAAT
** *
2682863 TGAGGGTATTTCGGTAATTTTACAAA-
1 CAAGGGTATTTTGGTAATTTTACAAAT
* * * *
2682889 CTAGGGGTATTTTAGCAATTTTACAGA-
1 C-AAGGGTATTTTGGTAATTTTACAAAT
* **
2682916 CTAGGGTATTTTGGTAATTTTACTGAT
1 CAAGGGTATTTTGGTAATTTTACAAAT
* *
2682943 CAAGGGTATTTTGGTAATTTTGCAAAC
1 CAAGGGTATTTTGGTAATTTTACAAAT
* *
2682970 CAAGGGTATTTTAGTAATTTTATAAAT
1 CAAGGGTATTTTGGTAATTTTACAAAT
2682997 CAAGGGTA
1 CAAGGGTA
2683005 AAACAGTAAT
Statistics
Matches: 266, Mismatches: 58, Indels: 18
0.78 0.17 0.05
Matches are distributed among these distances:
26 22 0.08
27 213 0.80
28 21 0.08
29 10 0.04
ACGTcount: A:0.31, C:0.08, G:0.20, T:0.40
Consensus pattern (27 bp):
CAAGGGTATTTTGGTAATTTTACAAAT
Found at i:2682845 original size:81 final size:80
Alignment explanation
Indices: 2682733--2682991 Score: 331
Period size: 81 Copynumber: 3.2 Consensus size: 80
2682723 AAAGTCAAGA
* ** * ** *
2682733 GTATTTTTGTAATTTTGTAAATTAGGGGTATTTCAGTAATTTTACCAATTGAGGGTATTTCGGTA
1 GTATTTTAGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCGGTA
2682798 ATTTTACAAACTAGTG
66 ATTTTACAAACTAG-G
*
2682814 GTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCGGTA
1 GTATTTTAGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCGGTA
2682879 ATTTTACAAACTAGGG
66 ATTTTACAAACTA-GG
* * ** ** *
2682895 GTATTTTAGCAATTTTACAGACTA-GGGTATTTTGGTAATTTTACTGATCAAGGGTATTTTGGTA
1 GTATTTTAGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCGGTA
* *
2682959 ATTTTGCAAACCAAGG
66 ATTTTACAAA-CTAGG
2682975 GTATTTTAGTAATTTTA
1 GTATTTTAGTAATTTTA
2682992 TAAATCAAGG
Statistics
Matches: 158, Mismatches: 18, Indels: 5
0.87 0.10 0.03
Matches are distributed among these distances:
80 62 0.39
81 95 0.60
82 1 0.01
ACGTcount: A:0.29, C:0.08, G:0.20, T:0.43
Consensus pattern (80 bp):
GTATTTTAGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCGGTA
ATTTTACAAACTAGG
Found at i:2682977 original size:80 final size:81
Alignment explanation
Indices: 2682645--2682991 Score: 320
Period size: 81 Copynumber: 4.3 Consensus size: 81
2682635 TTTCATTCTA
* * * * * * * ** * *
2682645 CAAGGGTGTTTTGGTAAATCTACAAACCAAGGGTATTTTAGTAATTTTGTAAACCAATGGTATTT
1 CAAGGGTATTTTAGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTACAAATCAAGGGTATTT
** * *
2682710 CTATAAATTTTAGAAAGT
66 CGGT-AATTTTACAAA-C
* * ** * ** * **
2682728 CAAGAGTATTTTTGTAATTTTGTAAATTAGGGGTATTTCAGTAATTTTACCAATTGAGGGTATTT
1 CAAGGGTATTTTAGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTACAAATCAAGGGTATTT
2682793 CGGTAATTTTACAAA-
66 CGGTAATTTTACAAAC
* * **
2682808 CTAGTGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTACAAATTGAGGGTATT
1 CAAG-GGTATTTTAGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTACAAATCAAGGGTATT
2682873 TCGGTAATTTTACAAAC
65 TCGGTAATTTTACAAAC
* * * * **
2682890 TAGGGGTATTTTAGCAATTTTACAGACTA-GGGTATTTTGGTAATTTTACTGATCAAGGGTATTT
1 CAAGGGTATTTTAGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTACAAATCAAGGGTATTT
* *
2682954 TGGTAATTTTGCAAAC
66 CGGTAATTTTACAAAC
2682970 CAAGGGTATTTTAGTAATTTTA
1 CAAGGGTATTTTAGTAATTTTA
2682992 TAAATCAAGG
Statistics
Matches: 217, Mismatches: 45, Indels: 7
0.81 0.17 0.03
Matches are distributed among these distances:
80 67 0.31
81 90 0.41
82 11 0.05
83 49 0.23
ACGTcount: A:0.31, C:0.08, G:0.20, T:0.41
Consensus pattern (81 bp):
CAAGGGTATTTTAGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTACAAATCAAGGGTATTT
CGGTAATTTTACAAAC
Found at i:2683012 original size:27 final size:27
Alignment explanation
Indices: 2682982--2683112 Score: 156
Period size: 27 Copynumber: 4.9 Consensus size: 27
2682972 AGGGTATTTT
*
2682982 AGTAATTTTATAAATCAAGGGTAAAAC
1 AGTAATTCTATAAATCAAGGGTAAAAC
* *
2683009 AGTAATTCTGTAAATTAAGGGTAAAAC
1 AGTAATTCTATAAATCAAGGGTAAAAC
*
2683036 AGTAATTCTATAAATCGAGGGTAAAA-
1 AGTAATTCTATAAATCAAGGGTAAAAC
* * * * *
2683062 TGATAATTTTGTAAATCGAGTGTAAAAC
1 AG-TAATTCTATAAATCAAGGGTAAAAC
*
2683090 GGTAATTCTATAAATCAAGGGTA
1 AGTAATTCTATAAATCAAGGGTA
2683113 CTTTGGTAAT
Statistics
Matches: 87, Mismatches: 15, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
26 1 0.01
27 85 0.98
28 1 0.01
ACGTcount: A:0.44, C:0.08, G:0.18, T:0.31
Consensus pattern (27 bp):
AGTAATTCTATAAATCAAGGGTAAAAC
Found at i:2683125 original size:54 final size:54
Alignment explanation
Indices: 2682954--2683112 Score: 174
Period size: 54 Copynumber: 2.9 Consensus size: 54
2682944 AAGGGTATTT
* * **** *
2682954 TGGTAATTTTGCAAACCAAGGGTATTTTAGTAATTTTATAAATCAAGGGTAAAA
1 TGGTAATTTTGTAAATCAAGGGTAAAACAGTAATTCTATAAATCAAGGGTAAAA
** * * *
2683008 CAGTAATTCTGTAAATTAAGGGTAAAACAGTAATTCTATAAATCGAGGGTAAAA
1 TGGTAATTTTGTAAATCAAGGGTAAAACAGTAATTCTATAAATCAAGGGTAAAA
* * * *
2683062 TGATAATTTTGTAAATCGAGTGTAAAACGGTAATTCTATAAATCAAGGGTA
1 TGGTAATTTTGTAAATCAAGGGTAAAACAGTAATTCTATAAATCAAGGGTA
2683113 CTTTGGTAAT
Statistics
Matches: 84, Mismatches: 21, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
54 84 1.00
ACGTcount: A:0.41, C:0.08, G:0.19, T:0.32
Consensus pattern (54 bp):
TGGTAATTTTGTAAATCAAGGGTAAAACAGTAATTCTATAAATCAAGGGTAAAA
Found at i:2689735 original size:40 final size:40
Alignment explanation
Indices: 2689644--2689863 Score: 214
Period size: 40 Copynumber: 5.5 Consensus size: 40
2689634 ACCCAAGTAT
* * ** * *
2689644 CTTCGGGATTTAG-TCGGATATAACCACTCGCAC-AAGGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
* * * *
2689682 CTTCGGGTCTTAGCCCGAATATGGTCACTAGCATAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
* * *
2689722 CTTCGGGACTTAGCCCGGACATAGCCGCTAGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
* *
2689762 CTTCGGGTCTTAGCCCGGATATAG-CAACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATGC
* * * * *
2689802 CTTC-GGATCTTAGTCTGGATATAGTCATTAGCATAAAAGC
1 CTTCGGGA-CTTAGCCCGGATATAGTCACTAGCACAAATGC
2689842 CTTCGGGACTTAGCCCGGATAT
1 CTTCGGGACTTAGCCCGGATAT
2689864 CATTCGAATA
Statistics
Matches: 146, Mismatches: 30, Indels: 10
0.78 0.16 0.05
Matches are distributed among these distances:
38 11 0.08
39 16 0.11
40 115 0.79
41 4 0.03
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.25
Consensus pattern (40 bp):
CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
Found at i:2691835 original size:50 final size:50
Alignment explanation
Indices: 2691721--2691944 Score: 256
Period size: 50 Copynumber: 4.5 Consensus size: 50
2691711 GATATGCATC
* * * * *
2691721 GTAGCCTGCACTTAGTACTACACATGCGACC-AACAATCCGGTACACGTA
1 GTAGCCTGCACTTAGTACTACACATGTGACCTAACAGTCTGATACACATA
* * ** *
2691770 GTAGCCTGCACTTAGTACTACACACGTGACCTCACCTTCTGATACACGTA
1 GTAGCCTGCACTTAGTACTACACATGTGACCTAACAGTCTGATACACATA
* *
2691820 GTAGCCTGCACTTAGTACTACACATGTGATC-AA-AGTCATTGAGTACGCATA
1 GTAGCCTGCACTTAGTACTACACATGTGACCTAACAGTC--TGA-TACACATA
* * * *
2691871 GTAGCCTGCACTTAGTACTACACATGCGACTTAACAGTATGGTACACATA
1 GTAGCCTGCACTTAGTACTACACATGTGACCTAACAGTCTGATACACATA
2691921 GTAGCCTGCACTTAGTACTACACA
1 GTAGCCTGCACTTAGTACTACACA
2691945 CGTGTATTCA
Statistics
Matches: 149, Mismatches: 20, Indels: 11
0.83 0.11 0.06
Matches are distributed among these distances:
48 2 0.01
49 30 0.20
50 76 0.51
51 36 0.24
52 2 0.01
53 3 0.02
ACGTcount: A:0.30, C:0.27, G:0.18, T:0.25
Consensus pattern (50 bp):
GTAGCCTGCACTTAGTACTACACATGTGACCTAACAGTCTGATACACATA
Found at i:2691917 original size:101 final size:99
Alignment explanation
Indices: 2691721--2691944 Score: 279
Period size: 101 Copynumber: 2.2 Consensus size: 99
2691711 GATATGCATC
*
2691721 GTAGCCTGCACTTAGTACTACACATGCGACCAACAATCCGGTACACGTAGTAGCCTGCACTTAGT
1 GTAGCCTGCACTTAGTACTACACATGCGACCAACAATCCGGTACACATAGTAGCCTGCACTTAGT
* * ** * *
2691786 ACTACACACGTGACCTCACCTTCTGATACACGTA
66 ACTACACACGCGACCTAACAGTATGATACACATA
* * * * *
2691820 GTAGCCTGCACTTAGTACTACACATGTGATCAA-AGTCATTGAGTACGCATAGTAGCCTGCACTT
1 GTAGCCTGCACTTAGTACTACACATGCGACCAACAATC--CG-GTACACATAGTAGCCTGCACTT
* * *
2691884 AGTACTACACATGCGACTTAACAGTATGGTACACATA
63 AGTACTACACACGCGACCTAACAGTATGATACACATA
2691921 GTAGCCTGCACTTAGTACTACACA
1 GTAGCCTGCACTTAGTACTACACA
2691945 CGTGTATTCA
Statistics
Matches: 107, Mismatches: 15, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
98 3 0.03
99 31 0.29
100 1 0.01
101 72 0.67
ACGTcount: A:0.30, C:0.27, G:0.18, T:0.25
Consensus pattern (99 bp):
GTAGCCTGCACTTAGTACTACACATGCGACCAACAATCCGGTACACATAGTAGCCTGCACTTAGT
ACTACACACGCGACCTAACAGTATGATACACATA
Found at i:2694768 original size:58 final size:58
Alignment explanation
Indices: 2694678--2694787 Score: 211
Period size: 58 Copynumber: 1.9 Consensus size: 58
2694668 TGTGTTCATG
2694678 GAGTTCTAGTTTCAATTATTTCAGATAGGGATCAATGTTTTACTTTGAGGTTTTGGAA
1 GAGTTCTAGTTTCAATTATTTCAGATAGGGATCAATGTTTTACTTTGAGGTTTTGGAA
*
2694736 GAGTTCTAGTTTCAATTATTTCAGATAGGGATCAATGTTTTACTTTGGGGTT
1 GAGTTCTAGTTTCAATTATTTCAGATAGGGATCAATGTTTTACTTTGAGGTT
2694788 AAAGCTTAGT
Statistics
Matches: 51, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
58 51 1.00
ACGTcount: A:0.25, C:0.09, G:0.23, T:0.44
Consensus pattern (58 bp):
GAGTTCTAGTTTCAATTATTTCAGATAGGGATCAATGTTTTACTTTGAGGTTTTGGAA
Found at i:2699229 original size:37 final size:37
Alignment explanation
Indices: 2699167--2699246 Score: 99
Period size: 37 Copynumber: 2.2 Consensus size: 37
2699157 CTTATTACGA
* *
2699167 AGTCTTACCCGGACATAACCTCCACACGAAGTTATCG
1 AGTCTTACCCGGACAAAACCTCCACACGAAGTCATCG
* *
2699204 AGTCTTACCCGGACAAAA-TTCCCACACGCAGTCATCG
1 AGTCTTACCCGGACAAAACCT-CCACACGAAGTCATCG
*
2699241 GGTCTT
1 AGTCTT
2699247 TAGAGCCCGG
Statistics
Matches: 37, Mismatches: 5, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
36 1 0.03
37 36 0.97
ACGTcount: A:0.28, C:0.33, G:0.17, T:0.23
Consensus pattern (37 bp):
AGTCTTACCCGGACAAAACCTCCACACGAAGTCATCG
Found at i:2699470 original size:47 final size:47
Alignment explanation
Indices: 2699377--2699753 Score: 553
Period size: 47 Copynumber: 8.1 Consensus size: 47
2699367 TATCACATTT
* * * *
2699377 ATACAC-T-TTCACATTCATCACA-TCGCCATTAGGCCTTATCTCAC
1 ATACACATGTTCACTTTCATCACATTGGCCATTCGGCCTTATCACAC
* * *
2699421 ATACACATGCTCACATTCATCACATTGGCCACTCGGCCTTATCACAC
1 ATACACATGTTCACTTTCATCACATTGGCCATTCGGCCTTATCACAC
* *
2699468 ATACACCTGTTCACTTTCATCACATTGGCCATTCGGCTTTATCACAC
1 ATACACATGTTCACTTTCATCACATTGGCCATTCGGCCTTATCACAC
* *
2699515 ATATACATGTTCACTTTCATCACATTGGCCATTCGGTCTTATCACAC
1 ATACACATGTTCACTTTCATCACATTGGCCATTCGGCCTTATCACAC
2699562 ATACACATGTTCACTTTCATCACATTGGCCATTCGGCCTTATCACAC
1 ATACACATGTTCACTTTCATCACATTGGCCATTCGGCCTTATCACAC
*
2699609 ATATACATGTTCACTTTCATCACATTGGCCATTCGGCCTTATCACAC
1 ATACACATGTTCACTTTCATCACATTGGCCATTCGGCCTTATCACAC
* * * *
2699656 ATACACATGTTTACATTCATCACATTGGCCATTCGGCCTTATCTCAT
1 ATACACATGTTCACTTTCATCACATTGGCCATTCGGCCTTATCACAC
** *
2699703 ATATGCATGTTCACTTTCATCACATTGGCCATTCGGCCCTATTCACAC
1 ATACACATGTTCACTTTCATCACATTGGCCATTCGGCCTTA-TCACAC
2699751 ATA
1 ATA
2699754 TACACTTTCA
Statistics
Matches: 300, Mismatches: 29, Indels: 4
0.90 0.09 0.01
Matches are distributed among these distances:
44 6 0.02
45 1 0.00
46 14 0.05
47 272 0.91
48 7 0.02
ACGTcount: A:0.26, C:0.31, G:0.10, T:0.33
Consensus pattern (47 bp):
ATACACATGTTCACTTTCATCACATTGGCCATTCGGCCTTATCACAC
Found at i:2701365 original size:13 final size:13
Alignment explanation
Indices: 2701347--2701371 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
2701337 TACTAAATTT
2701347 TCATGGATTCAAG
1 TCATGGATTCAAG
2701360 TCATGGATTCAA
1 TCATGGATTCAA
2701372 TATACCATTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.20, T:0.32
Consensus pattern (13 bp):
TCATGGATTCAAG
Found at i:2702800 original size:29 final size:29
Alignment explanation
Indices: 2702755--2702873 Score: 118
Period size: 29 Copynumber: 4.2 Consensus size: 29
2702745 GTGAGCATGA
*
2702755 ATAT-AATATGATTTGGGCCTAATGGGCC
1 ATATGAATATGAATTGGGCCTAATGGGCC
* * *
2702783 ATATGAATGTGAATTGGGCTTAGTGGGCC
1 ATATGAATATGAATTGGGCCTAATGGGCC
* *
2702812 ATAAGAATATGAATTAGG-CTAGATGGGCC
1 ATATGAATATGAATTGGGCCTA-ATGGGCC
* * * *
2702841 ATTTGAATAAG-ATTGGGCTTAGTGGGCC
1 ATATGAATATGAATTGGGCCTAATGGGCC
2702869 ATATG
1 ATATG
2702874 CATGTTTGTA
Statistics
Matches: 72, Mismatches: 16, Indels: 6
0.77 0.17 0.06
Matches are distributed among these distances:
28 21 0.29
29 51 0.71
ACGTcount: A:0.29, C:0.11, G:0.29, T:0.30
Consensus pattern (29 bp):
ATATGAATATGAATTGGGCCTAATGGGCC
Found at i:2702848 original size:58 final size:57
Alignment explanation
Indices: 2702759--2702871 Score: 156
Period size: 58 Copynumber: 2.0 Consensus size: 57
2702749 GCATGAATAT
* * **
2702759 AATATGATTTGGGCCTAATGGGCCATATGAATGTGAATTGGGCTTAGTGGGCCATAAG
1 AATATGAATTAGGCCTAATGGGCCATATGAATAAG-ATTGGGCTTAGTGGGCCATAAG
*
2702817 AATATGAATTAGG-CTAGATGGGCCATTTGAATAAGATTGGGCTTAGTGGGCCATA
1 AATATGAATTAGGCCTA-ATGGGCCATATGAATAAGATTGGGCTTAGTGGGCCATA
2702872 TGCATGTTTG
Statistics
Matches: 49, Mismatches: 5, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
57 23 0.47
58 26 0.53
ACGTcount: A:0.29, C:0.12, G:0.30, T:0.29
Consensus pattern (57 bp):
AATATGAATTAGGCCTAATGGGCCATATGAATAAGATTGGGCTTAGTGGGCCATAAG
Found at i:2711239 original size:45 final size:45
Alignment explanation
Indices: 2711176--2711299 Score: 153
Period size: 45 Copynumber: 2.8 Consensus size: 45
2711166 TAGGATTTTG
* **
2711176 ATATG-TATTTCCGAGTAAGACCACGTCTGGGACGTTGGCATCGAT
1 ATATGTTATTT-CGTGTAAGACCACGTCTGGGACACTGGCATCGAT
* *
2711221 ATATGTGT-TTTTGTGTAAGACCACGTCTGGGACACTGGCATTGAT
1 ATATGT-TATTTCGTGTAAGACCACGTCTGGGACACTGGCATCGAT
**
2711266 ATATGTTATTTCGTGTAAGACCATATCTGGGACA
1 ATATGTTATTTCGTGTAAGACCACGTCTGGGACA
2711300 TCAACATCGT
Statistics
Matches: 68, Mismatches: 8, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
44 1 0.01
45 63 0.93
46 3 0.04
47 1 0.01
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (45 bp):
ATATGTTATTTCGTGTAAGACCACGTCTGGGACACTGGCATCGAT
Found at i:2712651 original size:28 final size:28
Alignment explanation
Indices: 2712618--2712679 Score: 117
Period size: 28 Copynumber: 2.2 Consensus size: 28
2712608 ATAACATATA
2712618 TGATCATGACTAAATTCATATATTCACT
1 TGATCATGACTAAATTCATATATTCACT
2712646 TGATCATGACTAAATTCATATATTCACT
1 TGATCATGACTAAATTCATATATTCACT
2712674 T-ATCAT
1 TGATCAT
2712680 ATTAGCCATT
Statistics
Matches: 34, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
27 5 0.15
28 29 0.85
ACGTcount: A:0.35, C:0.18, G:0.06, T:0.40
Consensus pattern (28 bp):
TGATCATGACTAAATTCATATATTCACT
Found at i:2714456 original size:37 final size:37
Alignment explanation
Indices: 2714393--2714464 Score: 117
Period size: 37 Copynumber: 1.9 Consensus size: 37
2714383 AGCTCAGACG
*
2714393 AAATCTCCACACGAAGTTATCAGGTCTTACCCGGACA
1 AAATCTCCACACGAAGTCATCAGGTCTTACCCGGACA
* *
2714430 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
1 AAATCTCCACACGAAGTCATCAGGTCTTACCCGGA
2714465 ATATATTTCC
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
37 32 1.00
ACGTcount: A:0.29, C:0.31, G:0.18, T:0.22
Consensus pattern (37 bp):
AAATCTCCACACGAAGTCATCAGGTCTTACCCGGACA
Found at i:2714749 original size:50 final size:50
Alignment explanation
Indices: 2714614--2714760 Score: 244
Period size: 50 Copynumber: 3.0 Consensus size: 50
2714604 CATCACCTAC
* *
2714614 ATATTTCACACT-AGCCATTCGGCTTTACCACATATACATATCTCATATAT
1 ATATTTCACATTGA-CCATTCGGCTTTACCACATATGCATATCTCATATAT
2714664 ATATTTCACATTGACCATTCGGCTTTACCACATATGCATATCTCATATAT
1 ATATTTCACATTGACCATTCGGCTTTACCACATATGCATATCTCATATAT
*
2714714 ATATTTCACATTGACCATTCGGCTTTACCACATATGCATGT-TCATAT
1 ATATTTCACATTGACCATTCGGCTTTACCACATATGCATATCTCATAT
2714761 TCACCACATT
Statistics
Matches: 93, Mismatches: 3, Indels: 3
0.94 0.03 0.03
Matches are distributed among these distances:
49 6 0.06
50 86 0.92
51 1 0.01
ACGTcount: A:0.30, C:0.24, G:0.08, T:0.37
Consensus pattern (50 bp):
ATATTTCACATTGACCATTCGGCTTTACCACATATGCATATCTCATATAT
Found at i:2714810 original size:47 final size:47
Alignment explanation
Indices: 2714719--2714910 Score: 271
Period size: 47 Copynumber: 4.1 Consensus size: 47
2714709 TATATATATT
* * * *
2714719 TCACATTGACCATTCGGCTTTA-C-CACATATGCATGTTCATATTCA
1 TCACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCA
*
2714764 CCACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCA
* * * *
2714811 TCGCACTGGCCATTCGGCCTTATCACATATATGCATGCTCACATTTA
1 TCACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCA
* *
2714858 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCA
2714905 TCACAT
1 TCACAT
2714911 AAAATCCTAA
Statistics
Matches: 131, Mismatches: 14, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
45 19 0.15
46 1 0.01
47 111 0.85
ACGTcount: A:0.26, C:0.30, G:0.12, T:0.32
Consensus pattern (47 bp):
TCACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCA
Found at i:2734650 original size:45 final size:45
Alignment explanation
Indices: 2734587--2734758 Score: 150
Period size: 45 Copynumber: 4.0 Consensus size: 45
2734577 TATGATTTTG
* ** * *
2734587 ATATGTATTTTCGAGTAAGACCATTTTTGGGACGTTGGCATCGAT
1 ATATGTGTTTTCGAGTAAGACCACGTCTGGGACATTGGCATCGAT
*
2734632 ATATGTGTTTTCGTGTAAGACCACGTCTGGGACATTGGCATCGAT
1 ATATGTGTTTTCGAGTAAGACCACGTCTGGGACATTGGCATCGAT
* *
2734677 ATA--TG---T-GAGTAAGACCATGTCTGGGACATCGGCATCG-T
1 ATATGTGTTTTCGAGTAAGACCACGTCTGGGACATTGGCATCGAT
* * * *
2734715 AT-T-AG-ATTCGAGTAAGACC-CTGTATGGGACAGTGGCATCGAT
1 ATATGTGTTTTCGAGTAAGACCAC-GTCTGGGACATTGGCATCGAT
2734757 AT
1 AT
2734759 GAGATAGCAT
Statistics
Matches: 107, Mismatches: 14, Indels: 15
0.79 0.10 0.11
Matches are distributed among these distances:
38 4 0.04
39 28 0.26
40 2 0.02
41 26 0.24
42 3 0.03
43 2 0.02
45 42 0.39
ACGTcount: A:0.26, C:0.16, G:0.27, T:0.31
Consensus pattern (45 bp):
ATATGTGTTTTCGAGTAAGACCACGTCTGGGACATTGGCATCGAT
Found at i:2734743 original size:41 final size:40
Alignment explanation
Indices: 2734641--2734763 Score: 119
Period size: 41 Copynumber: 3.0 Consensus size: 40
2734631 TATATGTGTT
* *
2734641 TTCGTGTAAGACCAC-GTCTGGGACATTGGCATCG-A-TATA
1 TTCGAGTAAGACC-CTGTCTGGGACA-TGGCATCGTATTAGA
*
2734680 TGT-GAGTAAGACCATGTCTGGGACATCGGCATCGTATTAGA
1 T-TCGAGTAAGACCCTGTCTGGGACAT-GGCATCGTATTAGA
* *
2734721 TTCGAGTAAGACCCTGTATGGGACAGTGGCATCGATATGAGA
1 TTCGAGTAAGACCCTGTCTGGGACA-TGGCATCG-TATTAGA
2734763 T
1 T
2734764 AGCATGTAAG
Statistics
Matches: 70, Mismatches: 6, Indels: 13
0.79 0.07 0.15
Matches are distributed among these distances:
38 1 0.01
39 27 0.39
40 3 0.04
41 31 0.44
42 8 0.11
ACGTcount: A:0.27, C:0.18, G:0.28, T:0.27
Consensus pattern (40 bp):
TTCGAGTAAGACCCTGTCTGGGACATGGCATCGTATTAGA
Found at i:2737346 original size:54 final size:54
Alignment explanation
Indices: 2737278--2737384 Score: 205
Period size: 54 Copynumber: 2.0 Consensus size: 54
2737268 GTAAATTCAA
2737278 CTATAATAGGATATAATGAGTTGATTTAATAAGATATGATGTGGCCATGATATT
1 CTATAATAGGATATAATGAGTTGATTTAATAAGATATGATGTGGCCATGATATT
*
2737332 CTATAATAGTATATAATGAGTTGATTTAATAAGATATGATGTGGCCATGATAT
1 CTATAATAGGATATAATGAGTTGATTTAATAAGATATGATGTGGCCATGATAT
2737385 GTCTTAAACT
Statistics
Matches: 52, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
54 52 1.00
ACGTcount: A:0.37, C:0.06, G:0.20, T:0.37
Consensus pattern (54 bp):
CTATAATAGGATATAATGAGTTGATTTAATAAGATATGATGTGGCCATGATATT
Found at i:2738297 original size:47 final size:47
Alignment explanation
Indices: 2738243--2738745 Score: 772
Period size: 47 Copynumber: 10.6 Consensus size: 47
2738233 TATTTGAATA
*
2738243 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCGATGTGATG
* *
2738290 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTAATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCGATGTGATG
*
2738337 AATGTGAAAGTGTATACATGTGATAAGGCCGAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCGATGTGATG
*
2738384 AATGTGAAAGTGTATATATGTGATAAGGCCGAAAATGGCCGATGTAATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCG--AATGGCCGATGTGATG
*
2738433 AATGTGAAAGTGTATACATGTGATAAGGCCGAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCGATGTGATG
* *
2738480 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTAATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCGATGTGATG
*
2738529 AATGTGAAAGTGTATACATGTGATAAGGCCGAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCGATGTGATG
* *
2738576 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTAATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCGATGTGATG
*
2738625 AATGTGAAAGTGTATACATGTGATAAGGCCGAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCGATGTGATG
* * * * *
2738672 AATGTGAAAGTGTATATATGTGATAGGGTCGAGTGGCCAACGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCGATGTGATG
* * *
2738719 GATGTCAAAGTGTATAAATGTGATAAG
1 AATGTGAAAGTGTATATATGTGATAAG
2738746 TCCCGAAGGG
Statistics
Matches: 420, Mismatches: 30, Indels: 12
0.91 0.06 0.03
Matches are distributed among these distances:
47 287 0.68
49 133 0.32
ACGTcount: A:0.33, C:0.09, G:0.30, T:0.28
Consensus pattern (47 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCGATGTGATG
Found at i:2738460 original size:96 final size:94
Alignment explanation
Indices: 2738243--2738745 Score: 835
Period size: 96 Copynumber: 5.3 Consensus size: 94
2738233 TATTTGAATA
* *
2738243 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATACATGTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAAGTGTATATA
2738308 TGTGATAAGGCCTAATGGCCGATGTAATG
66 TGTGATAAGGCCTAATGGCCGATGTAATG
2738337 AATGTGAAAGTGTATACATGTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATACATGTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAAGTGTATATA
*
2738402 TGTGATAAGGCCGAAAATGGCCGATGTAATG
66 TGTGATAAGGCC--TAATGGCCGATGTAATG
2738433 AATGTGAAAGTGTATACATGTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATACATGTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAAGTG--TATA
2738498 TATGTGATAAGGCCTAATGGCCGATGTAATG
64 TATGTGATAAGGCCTAATGGCCGATGTAATG
2738529 AATGTGAAAGTGTATACATGTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATACATGTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAAGTG--TATA
2738594 TATGTGATAAGGCCTAATGGCCGATGTAATG
64 TATGTGATAAGGCCTAATGGCCGATGTAATG
2738625 AATGTGAAAGTGTATACATGTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATACATGTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAAGTGTATATA
* * * * * * *
2738690 TGTGATAGGGTCGAGTGGCCAACGTGATG
66 TGTGATAAGGCCTAATGGCCGATGTAATG
* * *
2738719 GATGTCAAAGTGTATAAATGTGATAAG
1 AATGTGAAAGTGTATACATGTGATAAG
2738746 TCCCGAAGGG
Statistics
Matches: 391, Mismatches: 14, Indels: 8
0.95 0.03 0.02
Matches are distributed among these distances:
94 127 0.32
96 246 0.63
98 18 0.05
ACGTcount: A:0.33, C:0.09, G:0.30, T:0.28
Consensus pattern (94 bp):
AATGTGAAAGTGTATACATGTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAAGTGTATATA
TGTGATAAGGCCTAATGGCCGATGTAATG
Found at i:2740642 original size:40 final size:40
Alignment explanation
Indices: 2740159--2740630 Score: 764
Period size: 40 Copynumber: 11.8 Consensus size: 40
2740149 GAGAATTGAG
2740159 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* *
2740199 AGTGATGTATCCGGGCTAAGTCTCAAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
2740239 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* *
2740279 AGTGATGTATCCGGGCTAAGTCTCGAAGAGCATTCGTACT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
*
2740319 AGTGATGTATCCGGGCTAAGTCCCAAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
2740359 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* *
2740399 AGTGATGTATCCGGGCTAAGTCTCAAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
2740439 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* *
2740479 AGTGATGTATCCGGGCTAAGTCTCAAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* *
2740519 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * ** *
2740559 AGTGATATATCCGTGCTAAACCCCGAAGAGCATTTGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * * *
2740599 GGTGTTATATCCGGGCTAGGTCCCGAAGAGCA
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCA
2740631 ATCATGCTGG
Statistics
Matches: 399, Mismatches: 33, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
40 399 1.00
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.26
Consensus pattern (40 bp):
AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
Found at i:2744712 original size:47 final size:47
Alignment explanation
Indices: 2744658--2745434 Score: 1286
Period size: 47 Copynumber: 16.5 Consensus size: 47
2744648 TTTGAATAAC
2744658 TGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
1 TGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
*
2744705 TGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAA
1 TGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
* *
2744752 TGTGAAAGTATATATATGTGATAAGGCCTAACGGCCGATGTGATGAA
1 TGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
*
2744799 TGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAA
1 TGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
* *
2744846 TGTGAAAGTATATATATGTGATAAGGCCTAACGGCCGATGTGATGAA
1 TGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
*
2744893 TGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAA
1 TGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
* *
2744940 TGTGAAAGTATATATATGTGATAAGGCCTAACGGCCGATGTGATGAA
1 TGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
*
2744987 TGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAA
1 TGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
* *
2745034 TGTGAAAGTATATATATGTGATAAGGCCTAACGGCCGATGTGATGAA
1 TGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
*
2745081 TGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAA
1 TGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
* *
2745128 TGTGAAAGTATATATATGTGATAAGGCCTAACGGCCGATGTGATGAA
1 TGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
*
2745175 TGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAA
1 TGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
* *
2745222 TGTGAAAGTATATATATGTGATAAGGCCTAACGGCCGATGTGATGAA
1 TGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
*
2745269 TGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAA
1 TGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
* *
2745316 TGTGAAAGTATATATATGTGATAAGGCCTAACGGCCGATGTGATGAA
1 TGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
* * * * *
2745363 TGTGAAAGTGTATATATGTGAT-AGGGCTGAGTGGCCAACGTGATGGA
1 TGTGAAAGTGTATATATGTGATAAGGCCT-AATGGCCGATGTGATGAA
* *
2745410 TGTGAAAGTCTATAAATGTGATAAG
1 TGTGAAAGTGTATATATGTGATAAG
2745435 TCCCGAAGGG
Statistics
Matches: 679, Mismatches: 49, Indels: 3
0.93 0.07 0.00
Matches are distributed among these distances:
46 5 0.01
47 672 0.99
48 2 0.00
ACGTcount: A:0.34, C:0.09, G:0.28, T:0.29
Consensus pattern (47 bp):
TGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
Found at i:2744766 original size:94 final size:94
Alignment explanation
Indices: 2744658--2745434 Score: 1448
Period size: 94 Copynumber: 8.3 Consensus size: 94
2744648 TTTGAATAAC
* *
2744658 TGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATG
1 TGTGAAAGTATATATATGTGATAAGGCCTAACGGCCGATGTGATGAATGTGAAAGTGTATATATG
2744723 TGATAAGGCCTAATAGCCGATGTGATGAA
66 TGATAAGGCCTAATAGCCGATGTGATGAA
2744752 TGTGAAAGTATATATATGTGATAAGGCCTAACGGCCGATGTGATGAATGTGAAAGTGTATATATG
1 TGTGAAAGTATATATATGTGATAAGGCCTAACGGCCGATGTGATGAATGTGAAAGTGTATATATG
2744817 TGATAAGGCCTAATAGCCGATGTGATGAA
66 TGATAAGGCCTAATAGCCGATGTGATGAA
2744846 TGTGAAAGTATATATATGTGATAAGGCCTAACGGCCGATGTGATGAATGTGAAAGTGTATATATG
1 TGTGAAAGTATATATATGTGATAAGGCCTAACGGCCGATGTGATGAATGTGAAAGTGTATATATG
2744911 TGATAAGGCCTAATAGCCGATGTGATGAA
66 TGATAAGGCCTAATAGCCGATGTGATGAA
2744940 TGTGAAAGTATATATATGTGATAAGGCCTAACGGCCGATGTGATGAATGTGAAAGTGTATATATG
1 TGTGAAAGTATATATATGTGATAAGGCCTAACGGCCGATGTGATGAATGTGAAAGTGTATATATG
2745005 TGATAAGGCCTAATAGCCGATGTGATGAA
66 TGATAAGGCCTAATAGCCGATGTGATGAA
2745034 TGTGAAAGTATATATATGTGATAAGGCCTAACGGCCGATGTGATGAATGTGAAAGTGTATATATG
1 TGTGAAAGTATATATATGTGATAAGGCCTAACGGCCGATGTGATGAATGTGAAAGTGTATATATG
2745099 TGATAAGGCCTAATAGCCGATGTGATGAA
66 TGATAAGGCCTAATAGCCGATGTGATGAA
2745128 TGTGAAAGTATATATATGTGATAAGGCCTAACGGCCGATGTGATGAATGTGAAAGTGTATATATG
1 TGTGAAAGTATATATATGTGATAAGGCCTAACGGCCGATGTGATGAATGTGAAAGTGTATATATG
2745193 TGATAAGGCCTAATAGCCGATGTGATGAA
66 TGATAAGGCCTAATAGCCGATGTGATGAA
2745222 TGTGAAAGTATATATATGTGATAAGGCCTAACGGCCGATGTGATGAATGTGAAAGTGTATATATG
1 TGTGAAAGTATATATATGTGATAAGGCCTAACGGCCGATGTGATGAATGTGAAAGTGTATATATG
2745287 TGATAAGGCCTAATAGCCGATGTGATGAA
66 TGATAAGGCCTAATAGCCGATGTGATGAA
2745316 TGTGAAAGTATATATATGTGATAAGGCCTAACGGCCGATGTGATGAATGTGAAAGTGTATATATG
1 TGTGAAAGTATATATATGTGATAAGGCCTAACGGCCGATGTGATGAATGTGAAAGTGTATATATG
* * * * * *
2745381 TGAT-AGGGCTGAGTGGCCAACGTGATGGA
66 TGATAAGGCCT-AATAGCCGATGTGATGAA
* *
2745410 TGTGAAAGTCTATAAATGTGATAAG
1 TGTGAAAGTATATATATGTGATAAG
2745435 TCCCGAAGGG
Statistics
Matches: 672, Mismatches: 10, Indels: 2
0.98 0.01 0.00
Matches are distributed among these distances:
93 5 0.01
94 667 0.99
ACGTcount: A:0.34, C:0.09, G:0.28, T:0.29
Consensus pattern (94 bp):
TGTGAAAGTATATATATGTGATAAGGCCTAACGGCCGATGTGATGAATGTGAAAGTGTATATATG
TGATAAGGCCTAATAGCCGATGTGATGAA
Found at i:2745643 original size:25 final size:25
Alignment explanation
Indices: 2745601--2745657 Score: 89
Period size: 25 Copynumber: 2.3 Consensus size: 25
2745591 AGCCCCAAAC
2745601 TAAAG-GTTTTGCTAAAGATTCAAG
1 TAAAGCGTTTTGCTAAAGATTCAAG
* *
2745625 TAATGCGTTTTGCTGAAGATTCAAG
1 TAAAGCGTTTTGCTAAAGATTCAAG
2745650 TAAAGCGT
1 TAAAGCGT
2745658 AAGATTATAC
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
24 4 0.14
25 25 0.86
ACGTcount: A:0.33, C:0.11, G:0.23, T:0.33
Consensus pattern (25 bp):
TAAAGCGTTTTGCTAAAGATTCAAG
Found at i:2752336 original size:27 final size:26
Alignment explanation
Indices: 2752299--2752410 Score: 143
Period size: 27 Copynumber: 4.2 Consensus size: 26
2752289 AGCATGGCTG
* *
2752299 CCAGAACAGATAATGTGACAGAGTCA
1 CCAGAACAGATAATGTGGCAGAGCCA
2752325 CCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGA-ACAGATAAT-GTGGCAGAGCCA
*
2752353 CCAGAACAGAAATATGTGGCAGAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
* *
2752380 CCAGATCAGATAATTGTGGCATAGCCA
1 CCAGAACAGATAA-TGTGGCAGAGCCA
2752407 CCAG
1 CCAG
2752411 GACACATCCT
Statistics
Matches: 76, Mismatches: 6, Indels: 7
0.85 0.07 0.08
Matches are distributed among these distances:
26 6 0.08
27 53 0.70
28 17 0.22
ACGTcount: A:0.38, C:0.23, G:0.24, T:0.15
Consensus pattern (26 bp):
CCAGAACAGATAATGTGGCAGAGCCA
Found at i:2752391 original size:54 final size:54
Alignment explanation
Indices: 2752299--2752410 Score: 163
Period size: 54 Copynumber: 2.1 Consensus size: 54
2752289 AGCATGGCTG
* *
2752299 CCAGAACAGATAATGTGACAGAGTCACCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGAACAGAAAATGTGACAGAGCCACCAGATACAGATAATCGTGGCAGAGCCA
* * *
2752353 CCAGAACAGAAATATGTGGCAGAGCCACCAGAT-CAGATAATTGTGGCATAGCCA
1 CCAGAACAGAAA-ATGTGACAGAGCCACCAGATACAGATAATCGTGGCAGAGCCA
2752407 CCAG
1 CCAG
2752411 GACACATCCT
Statistics
Matches: 52, Mismatches: 5, Indels: 2
0.88 0.08 0.03
Matches are distributed among these distances:
54 34 0.65
55 18 0.35
ACGTcount: A:0.38, C:0.23, G:0.24, T:0.15
Consensus pattern (54 bp):
CCAGAACAGAAAATGTGACAGAGCCACCAGATACAGATAATCGTGGCAGAGCCA
Found at i:2753824 original size:24 final size:24
Alignment explanation
Indices: 2753797--2753867 Score: 115
Period size: 24 Copynumber: 3.0 Consensus size: 24
2753787 CTAGATTTCC
**
2753797 TCCCTTATCTGCTCCTAAATCCTA
1 TCCCTTATCAACTCCTAAATCCTA
*
2753821 TCCCTTATCAACTCTTAAATCCTA
1 TCCCTTATCAACTCCTAAATCCTA
2753845 TCCCTTATCAACTCCTAAATCCT
1 TCCCTTATCAACTCCTAAATCCT
2753868 CTCCTGACAG
Statistics
Matches: 43, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 43 1.00
ACGTcount: A:0.25, C:0.37, G:0.01, T:0.37
Consensus pattern (24 bp):
TCCCTTATCAACTCCTAAATCCTA
Found at i:2754718 original size:22 final size:26
Alignment explanation
Indices: 2754686--2754737 Score: 67
Period size: 26 Copynumber: 2.1 Consensus size: 26
2754676 TTTCAAGCCA
2754686 TATTTCTCACC-CA-TTTAAT-CATT
1 TATTTCTCACCACATTTTAATACATT
2754709 TATTT-TCACCAACATTTTAATACATT
1 TATTTCTCACC-ACATTTTAATACATT
2754735 TAT
1 TAT
2754738 GAATCAATTT
Statistics
Matches: 25, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
22 5 0.20
23 5 0.20
24 2 0.08
25 6 0.24
26 7 0.28
ACGTcount: A:0.31, C:0.21, G:0.00, T:0.48
Consensus pattern (26 bp):
TATTTCTCACCACATTTTAATACATT
Found at i:2755569 original size:48 final size:48
Alignment explanation
Indices: 2755462--2755751 Score: 255
Period size: 48 Copynumber: 5.9 Consensus size: 48
2755452 TTCACACAAT
* *
2755462 GATGCCATAGCCCAGCTATTGTCTTACACGTATTCACATATCACATATC
1 GATGCCATAGCCCAGCTATGGTCTTACACGGA-TCACATATCACATATC
*
2755511 AATGCCATAGCCCAGCTATGGTCTTACACGGATCACATATCACATATC
1 GATGCCATAGCCCAGCTATGGTCTTACACGGATCACATATCACATATC
* * * * * *
2755559 GATGCTATAGCCCATCTATGGTCTTACACGAATCAAATATCTCA-CT-
1 GATGCCATAGCCCAGCTATGGTCTTACACGGATCACATATCACATATC
* * * * * * * *
2755605 GGTGCCATATCCCAGATATGGTCTTATACAGTAGCATATATCAC--ACC
1 GATGCCATAGCCCAGCTATGGTCTTACAC-GGATCACATATCACATATC
* * * * *
2755652 GATGCCATATCCCAGATATGGTCTTATACGGAAGCACATAATCACATCTCTCC
1 GATGCCATAGCCCAGCTATGGTCTTACACGG-ATCACAT-ATCACA--TAT-C
* *
2755705 GATGCCATAGCCCAACTATGGTCTTATACGGAAATCACATATCACAT
1 GATGCCATAGCCCAGCTATGGTCTTACACGG--ATCACATATCACAT
2755752 GTTGCTATGG
Statistics
Matches: 200, Mismatches: 31, Indels: 18
0.80 0.12 0.07
Matches are distributed among these distances:
46 24 0.12
47 45 0.22
48 59 0.29
49 29 0.14
51 1 0.00
53 35 0.17
54 7 0.04
ACGTcount: A:0.31, C:0.27, G:0.14, T:0.28
Consensus pattern (48 bp):
GATGCCATAGCCCAGCTATGGTCTTACACGGATCACATATCACATATC
Found at i:2755646 original size:143 final size:145
Alignment explanation
Indices: 2755464--2755730 Score: 328
Period size: 143 Copynumber: 1.8 Consensus size: 145
2755454 CACACAATGA
* * * * *
2755464 TGCCATAGCCCAGCTATTGTCTTACACGTATTCACATATCACATATCAATGCCATAGCCCAGCTA
1 TGCCATAGCCCAGATATGGTCTTACACGTATGCACATATCAC--ACCAATGCCATAGCCCAGATA
* * *
2755529 TGGTCTTACACGG-ATCACAT-ATCACA-TAT-CGATGCTATAGCCCATCTATGGTCTTACACGA
64 TGGTCTTACACGGAAGCACATAATCACACTATCCGATGCCATAGCCCAACTATGGTCTTACACGA
2755590 ATCAAATATCTCACTGG
129 ATCAAATATCTCACTGG
* * * * *
2755607 TGCCATATCCCAGATATGGTCTTATACAGTA-GCATATATCACACCGATGCCATATCCCAGATAT
1 TGCCATAGCCCAGATATGGTCTTACAC-GTATGCACATATCACACCAATGCCATAGCCCAGATAT
* *
2755671 GGTCTTATACGGAAGCACATAATCACATCTCTCCGATGCCATAGCCCAACTATGGTCTTA
65 GGTCTTACACGGAAGCACATAATCACA-CTATCCGATGCCATAGCCCAACTATGGTCTTA
2755731 TACGGAAATC
Statistics
Matches: 103, Mismatches: 15, Indels: 9
0.81 0.12 0.07
Matches are distributed among these distances:
141 29 0.28
142 6 0.06
143 38 0.37
144 3 0.03
145 2 0.02
146 25 0.24
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.28
Consensus pattern (145 bp):
TGCCATAGCCCAGATATGGTCTTACACGTATGCACATATCACACCAATGCCATAGCCCAGATATG
GTCTTACACGGAAGCACATAATCACACTATCCGATGCCATAGCCCAACTATGGTCTTACACGAAT
CAAATATCTCACTGG
Found at i:2755658 original size:47 final size:49
Alignment explanation
Indices: 2755512--2755751 Score: 156
Period size: 47 Copynumber: 4.9 Consensus size: 49
2755502 TCACATATCA
* * * * * *
2755512 ATGCCATAGCCCAGCTATGGTCTTACAC-GGATCACAT-ATCACATATCG
1 ATGCCATATCCCAGATATGGTCTTATACAGAAGCACATAATCACAT-CCG
* * ** * * * * *
2755560 ATGCTATAGCCCATCTATGGTCTTACAC-GAATCAAAT-ATCTCA-CTG
1 ATGCCATATCCCAGATATGGTCTTATACAGAAGCACATAATCACATCCG
* * *
2755606 GTGCCATATCCCAGATATGGTCTTATACAGTAGCATAT-ATCACA-CCG
1 ATGCCATATCCCAGATATGGTCTTATACAGAAGCACATAATCACATCCG
*
2755653 ATGCCATATCCCAGATATGGTCTTATACGGAAGCACATAATCACATCTCTCCG
1 ATGCCATATCCCAGATATGGTCTTATACAGAAGCACATAATCACA----TCCG
* * *
2755706 ATGCCATAGCCCA-ACTATGGTCTTATACGGAAATCACAT-ATCACAT
1 ATGCCATATCCCAGA-TATGGTCTTATACAG-AAGCACATAATCACAT
2755752 GTTGCTATGG
Statistics
Matches: 159, Mismatches: 24, Indels: 17
0.80 0.12 0.09
Matches are distributed among these distances:
46 23 0.14
47 47 0.30
48 44 0.28
49 1 0.01
52 1 0.01
53 36 0.23
54 7 0.04
ACGTcount: A:0.31, C:0.27, G:0.15, T:0.27
Consensus pattern (49 bp):
ATGCCATATCCCAGATATGGTCTTATACAGAAGCACATAATCACATCCG
Found at i:2755730 original size:53 final size:53
Alignment explanation
Indices: 2755607--2755751 Score: 162
Period size: 53 Copynumber: 2.8 Consensus size: 53
2755597 ATCTCACTGG
* * * *
2755607 TGCCATATCCCAGATATGGTCTTATACAG-TAGCATATATCACA-----CCGA
1 TGCCATAGCCCAGATATGGTCTTATACGGAAAGCACATATCACATCTCTCCGA
*
2755654 TGCCATATCCCAGATATGGTCTTATACGG-AAGCACATAATCACATCTCTCCGA
1 TGCCATAGCCCAGATATGGTCTTATACGGAAAGCACAT-ATCACATCTCTCCGA
*
2755707 TGCCATAGCCCA-ACTATGGTCTTATACGGAAATCACATATCACAT
1 TGCCATAGCCCAGA-TATGGTCTTATACGGAAAGCACATATCACAT
2755752 GTTGCTATGG
Statistics
Matches: 85, Mismatches: 5, Indels: 10
0.85 0.05 0.10
Matches are distributed among these distances:
47 34 0.40
48 6 0.07
52 1 0.01
53 37 0.44
54 7 0.08
ACGTcount: A:0.32, C:0.27, G:0.14, T:0.27
Consensus pattern (53 bp):
TGCCATAGCCCAGATATGGTCTTATACGGAAAGCACATATCACATCTCTCCGA
Found at i:2759080 original size:50 final size:50
Alignment explanation
Indices: 2758969--2759082 Score: 131
Period size: 50 Copynumber: 2.3 Consensus size: 50
2758959 TGAGCTAGAT
* * *
2758969 GAATTTGTATATTCGGCCACAAAGGTATGTACATATGTGATGTTATATTG
1 GAATTTATATATTCGGCCACAAAGGTATGCACATATGTGATATTATATTG
* * * * * *
2759019 GAATTTGTATATTCGGCTATATAGGTATGCACATATGTGATATTTTATTT
1 GAATTTATATATTCGGCCACAAAGGTATGCACATATGTGATATTATATTG
2759069 G-ATCTTATATATTC
1 GAAT-TTATATATTC
2759083 AACAAAATGA
Statistics
Matches: 55, Mismatches: 8, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
49 2 0.04
50 53 0.96
ACGTcount: A:0.29, C:0.10, G:0.18, T:0.43
Consensus pattern (50 bp):
GAATTTATATATTCGGCCACAAAGGTATGCACATATGTGATATTATATTG
Found at i:2767704 original size:23 final size:24
Alignment explanation
Indices: 2767678--2767722 Score: 56
Period size: 23 Copynumber: 1.9 Consensus size: 24
2767668 AAACATATAT
* *
2767678 ATATTTAAGTGCATAAT-TTCTAG
1 ATATATAAGTACATAATATTCTAG
*
2767701 ATATATATGTACATAATATTCT
1 ATATATAAGTACATAATATTCT
2767723 TTGAGCATAT
Statistics
Matches: 18, Mismatches: 3, Indels: 1
0.82 0.14 0.05
Matches are distributed among these distances:
23 14 0.78
24 4 0.22
ACGTcount: A:0.38, C:0.09, G:0.09, T:0.44
Consensus pattern (24 bp):
ATATATAAGTACATAATATTCTAG
Found at i:2772792 original size:36 final size:35
Alignment explanation
Indices: 2772713--2772792 Score: 108
Period size: 36 Copynumber: 2.3 Consensus size: 35
2772703 CATTATAATC
* *
2772713 ACTGTCACATGGTATGGAAACATACCCACATATTT
1 ACTGTCACATGGCATGAAAACATACCCACATATTT
*
2772748 ACTATCACATGGCATGAATAACATACCCACATATTCT
1 ACTGTCACATGGCATGAA-AACATACCCACATATT-T
2772785 -CTGTCACA
1 ACTGTCACA
2772793 ACAATCATTA
Statistics
Matches: 39, Mismatches: 4, Indels: 3
0.85 0.09 0.07
Matches are distributed among these distances:
35 15 0.38
36 23 0.59
37 1 0.03
ACGTcount: A:0.35, C:0.26, G:0.11, T:0.28
Consensus pattern (35 bp):
ACTGTCACATGGCATGAAAACATACCCACATATTT
Found at i:2777174 original size:9 final size:9
Alignment explanation
Indices: 2777160--2777189 Score: 60
Period size: 9 Copynumber: 3.3 Consensus size: 9
2777150 TGTATTAACC
2777160 AATACACAA
1 AATACACAA
2777169 AATACACAA
1 AATACACAA
2777178 AATACACAA
1 AATACACAA
2777187 AAT
1 AAT
2777190 TCCTCAAAAC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 21 1.00
ACGTcount: A:0.67, C:0.20, G:0.00, T:0.13
Consensus pattern (9 bp):
AATACACAA
Found at i:2783758 original size:93 final size:93
Alignment explanation
Indices: 2783650--2783822 Score: 265
Period size: 93 Copynumber: 1.9 Consensus size: 93
2783640 CGCCCATAAG
* *
2783650 CGAACTCAGACTCAACTCAATGAGCTCGGGCATTCACATCCATAAGTGAACTCGGAATCAACTCA
1 CGAACTCAGACTCAACTCAACGAGCTCGGACATTCACATCCATAAGTGAACTCGGAATCAACTCA
*
2783715 AAGAGCTCGGATGCCTAGTTACATCTCA
66 AAGAGCTCAGATGCCTAGTTACATCTCA
* * * *
2783743 CGAACTCAGACTCAACTCAACGAGTTCGGACGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCAGACTCAACTCAACGAGCTCGGACATTCACATCCATAAGTGAACTCGGAATCAACTCA
* *
2783808 ACGAGTTCAGATGCC
66 AAGAGCTCAGATGCC
2783823 CAAATATCCG
Statistics
Matches: 71, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.31, C:0.29, G:0.19, T:0.21
Consensus pattern (93 bp):
CGAACTCAGACTCAACTCAACGAGCTCGGACATTCACATCCATAAGTGAACTCGGAATCAACTCA
AAGAGCTCAGATGCCTAGTTACATCTCA
Found at i:2783815 original size:46 final size:46
Alignment explanation
Indices: 2783643--2783812 Score: 159
Period size: 46 Copynumber: 3.7 Consensus size: 46
2783633 TGTAACCCGC
* * *
2783643 CCATAAGCGAACTCAGACTCAACTCAATGAGCTCGGGCATTCACAT
1 CCATAAGCGAACTCAGACTCAACTCAACGAGCTCGGACGTTCACAT
* * * *
2783689 CCATAAGTGAACTCGGAATCAACTCAAAGAGCTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCAGACTCAACTCAACGAGCTCGGA---C--GTTCACAT
* * *
2783739 -C-TCA-CGAACTCAGACTCAACTCAACGAGTTCGGACGTTCGCAT
1 CCATAAGCGAACTCAGACTCAACTCAACGAGCTCGGACGTTCACAT
* *
2783782 CCATAAGTGAACTCGGACTCAACTCAACGAG
1 CCATAAGCGAACTCAGACTCAACTCAACGAG
2783813 TTCAGATGCC
Statistics
Matches: 99, Mismatches: 16, Indels: 18
0.74 0.12 0.14
Matches are distributed among these distances:
42 3 0.03
43 3 0.03
44 2 0.02
45 2 0.02
46 54 0.55
47 25 0.25
48 2 0.02
49 2 0.02
50 4 0.04
51 2 0.02
ACGTcount: A:0.32, C:0.29, G:0.19, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCAGACTCAACTCAACGAGCTCGGACGTTCACAT
Found at i:2785677 original size:30 final size:30
Alignment explanation
Indices: 2785641--2785704 Score: 92
Period size: 30 Copynumber: 2.1 Consensus size: 30
2785631 ATCCCAAAGT
*
2785641 TACTTGGTGCTCGGCCTTAACTCGCTGACA
1 TACTTGGTGCTCAGCCTTAACTCGCTGACA
* * *
2785671 TACTTGGTGCTCAGCCTTCACTTGCTGGCA
1 TACTTGGTGCTCAGCCTTAACTCGCTGACA
2785701 TACT
1 TACT
2785705 AGGCATTTGG
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.16, C:0.30, G:0.22, T:0.33
Consensus pattern (30 bp):
TACTTGGTGCTCAGCCTTAACTCGCTGACA
Found at i:2788167 original size:45 final size:45
Alignment explanation
Indices: 2788111--2788243 Score: 196
Period size: 45 Copynumber: 3.0 Consensus size: 45
2788101 TGATATCATT
* *
2788111 TCACCGACATTATAGCCTGCCAGGCTCGAAA-GCCCGAATAGTATC
1 TCACCGGCATTATAGCCTGCTAGGCTC-AAAGGCCCGAATAGTATC
* *
2788156 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCTAATAGTTTC
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATC
* *
2788201 TCACCGGCATTATATCCTACTAGGCTCAAAGGCCCGAATAGTA
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTA
2788244 CTGTACGATA
Statistics
Matches: 79, Mismatches: 8, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
44 3 0.04
45 76 0.96
ACGTcount: A:0.28, C:0.29, G:0.20, T:0.23
Consensus pattern (45 bp):
TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATC
Found at i:2797232 original size:32 final size:32
Alignment explanation
Indices: 2797191--2797252 Score: 124
Period size: 32 Copynumber: 1.9 Consensus size: 32
2797181 CAAGGTAAGC
2797191 CGGTATACAAATAAGCTTGGTTGAATTGAAGT
1 CGGTATACAAATAAGCTTGGTTGAATTGAAGT
2797223 CGGTATACAAATAAGCTTGGTTGAATTGAA
1 CGGTATACAAATAAGCTTGGTTGAATTGAA
2797253 TTATTATTGT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 30 1.00
ACGTcount: A:0.35, C:0.10, G:0.24, T:0.31
Consensus pattern (32 bp):
CGGTATACAAATAAGCTTGGTTGAATTGAAGT
Found at i:2797525 original size:42 final size:43
Alignment explanation
Indices: 2797466--2797569 Score: 138
Period size: 43 Copynumber: 2.4 Consensus size: 43
2797456 TGTTTTATGC
* **
2797466 GTAAGACCATGTCTGGGACATTGGCATC-ATATCTAATTTTAT
1 GTAAGACCATGTCTGGGACAGTGGCATCGATATCTAATTACAT
* * *
2797508 GTAAGACCTTGTCTGGGACAGTGGCATCGATATTTGATTACAT
1 GTAAGACCATGTCTGGGACAGTGGCATCGATATCTAATTACAT
*
2797551 GTAAGACCACGTCTGGGAC
1 GTAAGACCATGTCTGGGAC
2797570 GACGACATTA
Statistics
Matches: 53, Mismatches: 8, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
42 26 0.49
43 27 0.51
ACGTcount: A:0.27, C:0.18, G:0.24, T:0.31
Consensus pattern (43 bp):
GTAAGACCATGTCTGGGACAGTGGCATCGATATCTAATTACAT
Found at i:2801823 original size:42 final size:43
Alignment explanation
Indices: 2801775--2801879 Score: 133
Period size: 42 Copynumber: 2.5 Consensus size: 43
2801765 TATCACATAT
* *
2801775 CAATGCCAATGTCCCAGACAGGGTCTTAAATGAAA--TCATTAA
1 CAATGCCAATGTCCCAGACAGGGTCTTAAACGAAATCTCAAT-A
* * * *
2801817 CGATGCCAATGTCCCAGACATGGTCTTACACGTAATCTCAATA
1 CAATGCCAATGTCCCAGACAGGGTCTTAAACGAAATCTCAATA
2801860 CAATGCCAATGTCCCAGACA
1 CAATGCCAATGTCCCAGACA
2801880 TGAACATGCA
Statistics
Matches: 54, Mismatches: 7, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
42 30 0.56
43 20 0.37
44 4 0.07
ACGTcount: A:0.34, C:0.27, G:0.16, T:0.23
Consensus pattern (43 bp):
CAATGCCAATGTCCCAGACAGGGTCTTAAACGAAATCTCAATA
Found at i:2801878 original size:43 final size:43
Alignment explanation
Indices: 2801731--2801881 Score: 157
Period size: 43 Copynumber: 3.6 Consensus size: 43
2801721 CATAAGCTCG
* * * * *
2801731 TACAATGCC-ATATCCTAGATATGGTCTTACATGTTATCAC-A
1 TACAATGCCAATGTCCCAGACATGGTCTTACATGTAATCTCAA
* * * *
2801772 TATCAATGCCAATGTCCCAGACAGGGTCTTAAATG-AA-ATCAT
1 TA-CAATGCCAATGTCCCAGACATGGTCTTACATGTAATCTCAA
* *
2801814 TAACGATGCCAATGTCCCAGACATGGTCTTACACGTAATCTCAA
1 T-ACAATGCCAATGTCCCAGACATGGTCTTACATGTAATCTCAA
2801858 TACAATGCCAATGTCCCAGACATG
1 TACAATGCCAATGTCCCAGACATG
2801882 AACATGCATG
Statistics
Matches: 88, Mismatches: 16, Indels: 10
0.77 0.14 0.09
Matches are distributed among these distances:
41 3 0.03
42 37 0.42
43 44 0.50
44 4 0.05
ACGTcount: A:0.33, C:0.25, G:0.15, T:0.27
Consensus pattern (43 bp):
TACAATGCCAATGTCCCAGACATGGTCTTACATGTAATCTCAA
Found at i:2809638 original size:24 final size:23
Alignment explanation
Indices: 2809595--2809640 Score: 58
Period size: 24 Copynumber: 1.9 Consensus size: 23
2809585 ATTCAGCATT
2809595 CATAGTAATTCAATCATAAATAAA
1 CATAGTAATTCAA-CATAAATAAA
2809619 CATATGTAATTCAA-AGTAAATA
1 CATA-GTAATTCAACA-TAAATA
2809641 CATTTATTTG
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
23 1 0.05
24 10 0.50
25 9 0.45
ACGTcount: A:0.52, C:0.11, G:0.07, T:0.30
Consensus pattern (23 bp):
CATAGTAATTCAACATAAATAAA
Found at i:2810190 original size:17 final size:18
Alignment explanation
Indices: 2810165--2810198 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
2810155 AGTACTCAAA
*
2810165 GTAATAATCA-CAAAAAT
1 GTAAAAATCATCAAAAAT
2810182 GTAAAAATCATCAAAAA
1 GTAAAAATCATCAAAAA
2810199 CAGAGCAAAG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 9 0.60
18 6 0.40
ACGTcount: A:0.62, C:0.12, G:0.06, T:0.21
Consensus pattern (18 bp):
GTAAAAATCATCAAAAAT
Found at i:2815817 original size:6 final size:6
Alignment explanation
Indices: 2815806--2815893 Score: 63
Period size: 6 Copynumber: 14.3 Consensus size: 6
2815796 TATCAAAACT
* * *
2815806 AGAATC AGAATC AAAATC AGAATT AG-GTGAC AGAATC AGAATC AGAATC
1 AGAATC AGAATC AGAATC AGAATC AGAAT--C AGAATC AGAATC AGAATC
* * * *
2815855 AGTATC AGGTAA-C AGAATC AAAATC AGAAAC AGTATC AG
1 AGAATC A-G-AATC AGAATC AGAATC AGAATC AGAATC AG
2815894 GTAACTGAAT
Statistics
Matches: 63, Mismatches: 13, Indels: 12
0.72 0.15 0.14
Matches are distributed among these distances:
5 3 0.05
6 53 0.84
7 5 0.08
8 2 0.03
ACGTcount: A:0.49, C:0.15, G:0.18, T:0.18
Consensus pattern (6 bp):
AGAATC
Found at i:2815906 original size:31 final size:31
Alignment explanation
Indices: 2815806--2815915 Score: 132
Period size: 31 Copynumber: 3.5 Consensus size: 31
2815796 TATCAAAACT
* * * *
2815806 AGAATCAGAATCA-AAATCAGAATTAGGTGAC
1 AGAATCAAAATCAGAAA-CAGTATCAGGTAAC
* *
2815837 AGAATCAGAATCAGAATCAGTATCAGGTAAC
1 AGAATCAAAATCAGAAACAGTATCAGGTAAC
2815868 AGAATCAAAATCAGAAACAGTATCAGGTAAC
1 AGAATCAAAATCAGAAACAGTATCAGGTAAC
*
2815899 TGAATCAAAAATCAGAA
1 AGAATC-AAAATCAGAA
2815916 TATGAATGCA
Statistics
Matches: 70, Mismatches: 7, Indels: 3
0.88 0.09 0.04
Matches are distributed among these distances:
31 58 0.83
32 12 0.17
ACGTcount: A:0.50, C:0.15, G:0.17, T:0.18
Consensus pattern (31 bp):
AGAATCAAAATCAGAAACAGTATCAGGTAAC
Found at i:2817457 original size:40 final size:40
Alignment explanation
Indices: 2817364--2817620 Score: 315
Period size: 40 Copynumber: 6.5 Consensus size: 40
2817354 AAGCCAAGTA
* * *
2817364 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCTC-AATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* * *
2817402 CCTTTGGGACATAGCCCGGATATAGTAACTCGCACCAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
2817442 CCTTTGGGACTTAGCCCGGATATAGTAGCTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * *
2817482 CCTTCGGGACTTAGCCCGGATGTAATAACTCGTACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
2817522 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * * *
2817562 CCTTCGGGACTTAGCCTGGA-ACTAGTCACTAGCGCAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
* *
2817602 CCTTCGGGAGTTAGTCCGG
1 CCTTCGGGACTTAGCCCGG
2817621 TTATCATCTG
Statistics
Matches: 192, Mismatches: 23, Indels: 6
0.87 0.10 0.03
Matches are distributed among these distances:
38 11 0.06
39 18 0.09
40 163 0.85
ACGTcount: A:0.25, C:0.26, G:0.24, T:0.25
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:2825344 original size:40 final size:40
Alignment explanation
Indices: 2825251--2825427 Score: 191
Period size: 40 Copynumber: 4.5 Consensus size: 40
2825241 AAGCCAAGTA
* * *
2825251 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCGC-TCAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACCAATG
*
2825289 CCTTCGGGACATAGCCCGGATATAGTAACTCGCACCAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACCAATG
* * *
2825329 CCTTCGGAACTTAGCCCGGATATAGTAGCTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACCAATG
* * * *
2825369 CCTTCGGGACTTAGCCCGGA-ACTAGTCACTAGCGCAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACCAATG
* *
2825409 GCTTCGGGAGTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
2825428 TTATCATCCG
Statistics
Matches: 120, Mismatches: 15, Indels: 6
0.85 0.11 0.04
Matches are distributed among these distances:
38 12 0.10
39 17 0.14
40 91 0.76
ACGTcount: A:0.24, C:0.28, G:0.25, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACCAATG
Found at i:2827531 original size:27 final size:27
Alignment explanation
Indices: 2827474--2827848 Score: 466
Period size: 27 Copynumber: 14.3 Consensus size: 27
2827464 GGGGCAAAAT
* * * *
2827474 GGTAATTTTACCCCACA-AGGTATCTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * *
2827500 GGTAATTCCACCCTATAGGGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
2827527 AGTAATTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
2827554 GGTAATTCTACCCTACAAGGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTC
*
2827581 GGTAATTCTACCCTACAGGGGTATTCC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
2827608 GGTAATTCTACCCTACAGGGGCATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
2827635 GATAATTCTACCCTACAGGGGTATTGC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
2827662 GATAAGTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
2827689 GGTAATTCTACCCTATAGGGGTA-TTC
1 GGTAATTCTACCCTACAGGGGTATTTC
2827715 TGGTAATTCTACCCTACAGGGGTATTTC
1 -GGTAATTCTACCCTACAGGGGTATTTC
2827743 GGTAATTCTA--C--C-----TATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
2827761 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
2827788 GATAATTCTACCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
2827815 AGTAATTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
2827842 GGTAATT
1 GGTAATT
2827849 TCACAAATCA
Statistics
Matches: 302, Mismatches: 35, Indels: 23
0.84 0.10 0.06
Matches are distributed among these distances:
18 16 0.05
20 1 0.00
22 1 0.00
23 1 0.00
25 1 0.00
26 16 0.05
27 263 0.87
28 3 0.01
ACGTcount: A:0.25, C:0.22, G:0.20, T:0.34
Consensus pattern (27 bp):
GGTAATTCTACCCTACAGGGGTATTTC
Found at i:2827760 original size:18 final size:18
Alignment explanation
Indices: 2827737--2827772 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
2827727 CCTACAGGGG
2827737 TATTTCGGTAATTCTACC
1 TATTTCGGTAATTCTACC
2827755 TATTTCGGTAATTCTACC
1 TATTTCGGTAATTCTACC
2827773 CTACAGGGGT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.22, C:0.22, G:0.11, T:0.44
Consensus pattern (18 bp):
TATTTCGGTAATTCTACC
Found at i:2827774 original size:72 final size:72
Alignment explanation
Indices: 2827683--2827826 Score: 236
Period size: 72 Copynumber: 2.0 Consensus size: 72
2827673 CCTACAGGGG
* * *
2827683 TATTTCGGTAATTCTACCCTATAGGGGTA-TTCTGGTAATTCTACCCTACAGGGGTATTTCGGTA
1 TATTTCGGTAATTCTACCCTACAGGGGTATTTC-GATAATTCTACCCTACAGGGGTATTTCAGTA
2827747 ATTCTACC
65 ATTCTACC
*
2827755 TATTTCGGTAATTCTACCCTACAGGGGTATTTCGATAATTCTACCCTATAGGGGTATTTCAGTAA
1 TATTTCGGTAATTCTACCCTACAGGGGTATTTCGATAATTCTACCCTACAGGGGTATTTCAGTAA
2827820 TTCTACC
66 TTCTACC
2827827 CTACAAGGGT
Statistics
Matches: 67, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
72 64 0.96
73 3 0.04
ACGTcount: A:0.24, C:0.21, G:0.18, T:0.38
Consensus pattern (72 bp):
TATTTCGGTAATTCTACCCTACAGGGGTATTTCGATAATTCTACCCTACAGGGGTATTTCAGTAA
TTCTACC
Found at i:2827800 original size:99 final size:99
Alignment explanation
Indices: 2827668--2827848 Score: 319
Period size: 99 Copynumber: 1.8 Consensus size: 99
2827658 TTGCGATAAG
* *
2827668 TCTACCCTACAGGGGTATTTCGGTAATTCTACCCTATAGGGGTA-TTCTGGTAATTCTACCCTAC
1 TCTACCCTACAGGGGTATTTCGATAATTCTACCCTATAGGGGTATTTC-AGTAATTCTACCCTAC
*
2827732 AGGGGTATTTCGGTAATTCTACCTATTTCGGTAAT
65 AAGGGTATTTCGGTAATTCTACCTATTTCGGTAAT
2827767 TCTACCCTACAGGGGTATTTCGATAATTCTACCCTATAGGGGTATTTCAGTAATTCTACCCTACA
1 TCTACCCTACAGGGGTATTTCGATAATTCTACCCTATAGGGGTATTTCAGTAATTCTACCCTACA
2827832 AGGGTATTTCGGTAATT
66 AGGGTATTTCGGTAATT
2827849 TCACAAATCA
Statistics
Matches: 78, Mismatches: 3, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
99 75 0.96
100 3 0.04
ACGTcount: A:0.24, C:0.21, G:0.19, T:0.36
Consensus pattern (99 bp):
TCTACCCTACAGGGGTATTTCGATAATTCTACCCTATAGGGGTATTTCAGTAATTCTACCCTACA
AGGGTATTTCGGTAATTCTACCTATTTCGGTAAT
Found at i:2827864 original size:54 final size:55
Alignment explanation
Indices: 2827755--2827903 Score: 153
Period size: 54 Copynumber: 2.7 Consensus size: 55
2827745 TAATTCTACC
* * ** *
2827755 TATTTCGGTAATTCTACCCTACAGGGGTATTTCGATAA-TTCTACCCTATAGGGG
1 TATTTCGGTAATTCTACCCTACAAGGGTATTTCGGTAATTTCTACCAAATACGGG
*
2827809 TATTTCAGTAATTCTACCCTACAAGGGTATTTCGGTAATTTC-A-CAAATCACGGG
1 TATTTCGGTAATTCTACCCTACAAGGGTATTTCGGTAATTTCTACCAAAT-ACGGG
* * ** *
2827863 TATTTTGGTAATTTTA-CAAACCAAGGGTATTTTGGTAATTT
1 TATTTCGGTAATTCTACCCTA-CAAGGGTATTTCGGTAATTT
2827904 TATTGATCGA
Statistics
Matches: 80, Mismatches: 12, Indels: 6
0.82 0.12 0.06
Matches are distributed among these distances:
53 5 0.06
54 72 0.90
55 3 0.04
ACGTcount: A:0.28, C:0.17, G:0.18, T:0.38
Consensus pattern (55 bp):
TATTTCGGTAATTCTACCCTACAAGGGTATTTCGGTAATTTCTACCAAATACGGG
Found at i:2827864 original size:126 final size:126
Alignment explanation
Indices: 2827630--2827875 Score: 345
Period size: 126 Copynumber: 2.0 Consensus size: 126
2827620 CTACAGGGGC
*
2827630 ATTTCGATAATTCTACCCTACAGGGGTATTGCGATAAGTCTACCCTACAGGGGTATTTCGGTAAT
1 ATTTCGATAATTCTACCCTACAGGGGTATTGCGATAAGTCTACCCTACAGGGGTATTTCAGTAAT
* * ** *
2827695 TCTACCCTATAGGGGTATTCTGGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCT
66 TCTACCCTACAAGGGTATTCTGGTAATTCTACAATACACGGGTATTTCGGTAATTCTACCT
* * * *
2827756 ATTTCGGTAATTCTACCCTACAGGGGTATTTCGATAATTCTACCCTATAGGGGTATTTCAGTAAT
1 ATTTCGATAATTCTACCCTACAGGGGTATTGCGATAAGTCTACCCTACAGGGGTATTTCAGTAAT
*
2827821 TCTACCCTACAAGGGTATT-TCGGTAATT-TCACAA-ATCACGGGTATTTTGGTAATT
66 TCTACCCTACAAGGGTATTCT-GGTAATTCT-ACAATA-CACGGGTATTTCGGTAATT
2827876 TTACAAACCA
Statistics
Matches: 106, Mismatches: 11, Indels: 6
0.86 0.09 0.05
Matches are distributed among these distances:
125 3 0.03
126 103 0.97
ACGTcount: A:0.25, C:0.20, G:0.20, T:0.35
Consensus pattern (126 bp):
ATTTCGATAATTCTACCCTACAGGGGTATTGCGATAAGTCTACCCTACAGGGGTATTTCAGTAAT
TCTACCCTACAAGGGTATTCTGGTAATTCTACAATACACGGGTATTTCGGTAATTCTACCT
Found at i:2827891 original size:153 final size:153
Alignment explanation
Indices: 2827602--2827902 Score: 403
Period size: 153 Copynumber: 2.0 Consensus size: 153
2827592 CCTACAGGGG
2827602 TATTCCGGTAATTCTACCCTACAGGGGCATTTCGATAATTCTACCCTACAGGGGTATTGCGATAA
1 TATTCCGGTAATTCTACCCTACAGGGGCATTTCGATAATTCTACCCTACAGGGGTATTGCGATAA
* ** * **
2827667 GTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTATAGGGGTATTCTGGTAATTCTACCCTAC
66 GTCTACCCTACAAGGGTATTTCGGTAATTCTACCAAATACGGGTATTCTGGTAATTCTACCAAAC
*
2827732 AGGGGTATTTCGGTAATTCTACC
131 AAGGGTATTTCGGTAATTCTACC
* * * *
2827755 TATTTCGGTAATTCTACCCTACAGGGGTATTTCGATAATTCTACCCTATAGGGGTATTTC-AGTA
1 TATTCCGGTAATTCTACCCTACAGGGGCATTTCGATAATTCTACCCTACAGGGGTATTGCGA-TA
* * *
2827819 ATTCTACCCTACAAGGGTATTTCGGTAATT-T-CACAAATCACGGGTATTTTGGTAATTTTA-CA
65 AGTCTACCCTACAAGGGTATTTCGGTAATTCTAC-CAAAT-ACGGGTATTCTGGTAATTCTACCA
*
2827881 AACCAAGGGTATTTTGGTAATT
128 AA-CAAGGGTATTTCGGTAATT
2827903 TTATTGATCG
Statistics
Matches: 129, Mismatches: 15, Indels: 8
0.85 0.10 0.05
Matches are distributed among these distances:
151 1 0.01
152 7 0.05
153 121 0.94
ACGTcount: A:0.26, C:0.20, G:0.20, T:0.35
Consensus pattern (153 bp):
TATTCCGGTAATTCTACCCTACAGGGGCATTTCGATAATTCTACCCTACAGGGGTATTGCGATAA
GTCTACCCTACAAGGGTATTTCGGTAATTCTACCAAATACGGGTATTCTGGTAATTCTACCAAAC
AAGGGTATTTCGGTAATTCTACC
Found at i:2827958 original size:27 final size:27
Alignment explanation
Indices: 2827830--2827963 Score: 142
Period size: 27 Copynumber: 5.0 Consensus size: 27
2827820 TTCTACCCTA
* * * *
2827830 CAAGGGTATTTCGGTAATTTCACAAAT
1 CAAGGGTATTTTGGTAATTTTATAAAC
* *
2827857 CACGGGTATTTTGGTAATTTTACAAAC
1 CAAGGGTATTTTGGTAATTTTATAAAC
** *
2827884 CAAGGGTATTTTGGTAATTTTATTGAT
1 CAAGGGTATTTTGGTAATTTTATAAAC
* *
2827911 CGAGGGTATTTTGGTAATTTTGTAAAC
1 CAAGGGTATTTTGGTAATTTTATAAAC
** *
2827938 CAAGGGTATTTCAGTAATTTTGTAAA
1 CAAGGGTATTTTGGTAATTTTATAAA
2827964 TTGAGGGTAA
Statistics
Matches: 90, Mismatches: 17, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 90 1.00
ACGTcount: A:0.30, C:0.10, G:0.21, T:0.40
Consensus pattern (27 bp):
CAAGGGTATTTTGGTAATTTTATAAAC
Found at i:2827970 original size:54 final size:54
Alignment explanation
Indices: 2827830--2828332 Score: 203
Period size: 54 Copynumber: 9.4 Consensus size: 54
2827820 TTCTACCCTA
* * * **
2827830 CAAGGGTATTTCGGTAATTTCACAAATC-ACGGGTATTTTGGTAATTTTACAAAC
1 CAAGGGTATTTCAGTAATTTTATAAATCGA-GGGTATTTTGGTAATTTTGTAAAC
** **
2827884 CAAGGGTATTTTGGTAATTTTATTGATCGAGGGTATTTTGGTAATTTTGTAAAC
1 CAAGGGTATTTCAGTAATTTTATAAATCGAGGGTATTTTGGTAATTTTGTAAAC
* * *** * *
2827938 CAAGGGTATTTCAGTAATTTTGTAAATTGAGGGTAAAATGGTAATTCTGTAAAT
1 CAAGGGTATTTCAGTAATTTTATAAATCGAGGGTATTTTGGTAATTTTGTAAAC
* ** * * **** * *
2827992 CAAAGGTAAAAT-GGTAATTCTATAAATCGAGGGTAAGACGGTAATTCTGTAAAT
1 CAAGGGT-ATTTCAGTAATTTTATAAATCGAGGGTATTTTGGTAATTTTGTAAAC
* ** * * *** * * *
2828046 CGAGGGTAAAAAT-A-TAATTCTATAAATCGAAGGTAAAATGGTAATTCTATAAAT
1 CAAGGGT--ATTTCAGTAATTTTATAAATCGAGGGTATTTTGGTAATTTTGTAAAC
* *** * *** * *
2828100 CGAGGGTAAAAC-GATAATTCTATAAATCGAGGGTAAAATGGTAATTCTATCT-TA-
1 CAAGGGTATTTCAG-TAATTTTATAAATCGAGGGTATTTTGGTAATT-T-TGTAAAC
* * *
2828154 C-AGGAGTATTTCAGTAATTTTACAAATCGAGGGTATTTTAGTAATTTTGCAAAC
1 CAAGG-GTATTTCAGTAATTTTATAAATCGAGGGTATTTTGGTAATTTTGTAAAC
* * ** *
2828208 TGAA-GGTATTTC-GATAATTTTACAAATTC-AGGGTATTTCAGTAA-TTT-TACAAT
1 -CAAGGGTATTTCAG-TAATTTTATAAA-TCGAGGGTATTTTGGTAATTTTGTA-AAC
* * * *
2828261 CGACGGTATTGCAGTAATTTTATAAA-CTGAGGGTACTTTGGTAA-TTT-TACAA-
1 CAAGGGTATTTCAGTAATTTTATAAATC-GAGGGTATTTTGGTAATTTTGTA-AAC
**
2828313 CTGGGGTATTTCAGTAATTT
1 CAAGGGTATTTCAGTAATTT
2828333 GGTAATCTAA
Statistics
Matches: 362, Mismatches: 66, Indels: 44
0.77 0.14 0.09
Matches are distributed among these distances:
51 1 0.00
52 22 0.06
53 49 0.14
54 274 0.76
55 13 0.04
56 3 0.01
ACGTcount: A:0.35, C:0.10, G:0.20, T:0.36
Consensus pattern (54 bp):
CAAGGGTATTTCAGTAATTTTATAAATCGAGGGTATTTTGGTAATTTTGTAAAC
Found at i:2827981 original size:27 final size:27
Alignment explanation
Indices: 2827951--2828149 Score: 265
Period size: 27 Copynumber: 7.4 Consensus size: 27
2827941 GGGTATTTCA
* * *
2827951 GTAATTTTGTAAATTGAGGGTAAAATG
1 GTAATTCTATAAATCGAGGGTAAAATG
* * *
2827978 GTAATTCTGTAAATCAAAGGTAAAATG
1 GTAATTCTATAAATCGAGGGTAAAATG
* *
2828005 GTAATTCTATAAATCGAGGGTAAGACG
1 GTAATTCTATAAATCGAGGGTAAAATG
*
2828032 GTAATTCTGTAAATCGAGGGTAAAAAT-
1 GTAATTCTATAAATCGAGGGT-AAAATG
* *
2828059 ATAATTCTATAAATCGAAGGTAAAATG
1 GTAATTCTATAAATCGAGGGTAAAATG
*
2828086 GTAATTCTATAAATCGAGGGTAAAACG
1 GTAATTCTATAAATCGAGGGTAAAATG
*
2828113 ATAATTCTATAAATCGAGGGTAAAATG
1 GTAATTCTATAAATCGAGGGTAAAATG
2828140 GTAATTCTAT
1 GTAATTCTAT
2828150 CTTACAGGAG
Statistics
Matches: 149, Mismatches: 21, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
26 5 0.03
27 141 0.95
28 3 0.02
ACGTcount: A:0.41, C:0.08, G:0.21, T:0.31
Consensus pattern (27 bp):
GTAATTCTATAAATCGAGGGTAAAATG
Found at i:2828007 original size:81 final size:80
Alignment explanation
Indices: 2827951--2828149 Score: 301
Period size: 81 Copynumber: 2.5 Consensus size: 80
2827941 GGGTATTTCA
* * *
2827951 GTAATTTTGTAAATTGAGGGTAAAATGGTAATTCTGTAAATCAAAGGTAAAATGGTAATTCTATA
1 GTAATTCTGTAAATCGAGGGTAAAATGGTAATTCTATAAATCAAAGGTAAAATGGTAATTCTATA
*
2828016 AATCGAGGGTAAGAC
66 AATCGAGGGTAAAAC
* *
2828031 GGTAATTCTGTAAATCGAGGGTAAAAAT-ATAATTCTATAAATCGAAGGTAAAATGGTAATTCTA
1 -GTAATTCTGTAAATCGAGGGT-AAAATGGTAATTCTATAAATCAAAGGTAAAATGGTAATTCTA
2828095 TAAATCGAGGGTAAAAC
64 TAAATCGAGGGTAAAAC
*
2828112 GATAATTCTATAAATCGAGGGTAAAATGGTAATTCTAT
1 G-TAATTCTGTAAATCGAGGGTAAAATGGTAATTCTAT
2828150 CTTACAGGAG
Statistics
Matches: 107, Mismatches: 8, Indels: 6
0.88 0.07 0.05
Matches are distributed among these distances:
80 6 0.06
81 96 0.90
82 5 0.05
ACGTcount: A:0.41, C:0.08, G:0.21, T:0.31
Consensus pattern (80 bp):
GTAATTCTGTAAATCGAGGGTAAAATGGTAATTCTATAAATCAAAGGTAAAATGGTAATTCTATA
AATCGAGGGTAAAAC
Found at i:2828275 original size:26 final size:27
Alignment explanation
Indices: 2828159--2828332 Score: 175
Period size: 27 Copynumber: 6.6 Consensus size: 27
2828149 TCTTACAGGA
2828159 GTATTTCAGTAATTTTACAAATCGAGG
1 GTATTTCAGTAATTTTACAAATCGAGG
* * *
2828186 GTATTTTAGTAATTTTGCAAA-CTGAAG
1 GTATTTCAGTAATTTTACAAATC-GAGG
2828213 GTATTTC-GATAATTTTACAAATTC-AGG
1 GTATTTCAG-TAATTTTACAAA-TCGAGG
*
2828240 GTATTTCAGTAATTTTAC-AATCGACG
1 GTATTTCAGTAATTTTACAAATCGAGG
* *
2828266 GTATTGCAGTAATTTTATAAA-CTGAGG
1 GTATTTCAGTAATTTTACAAATC-GAGG
* *
2828293 GTACTTT-GGTAATTTTACAACT-G-GG
1 GTA-TTTCAGTAATTTTACAAATCGAGG
2828318 GTATTTCAGTAATTT
1 GTATTTCAGTAATTT
2828333 GGTAATCTAA
Statistics
Matches: 121, Mismatches: 15, Indels: 24
0.76 0.09 0.15
Matches are distributed among these distances:
24 3 0.02
25 14 0.12
26 24 0.20
27 76 0.63
28 3 0.02
29 1 0.01
ACGTcount: A:0.31, C:0.10, G:0.18, T:0.40
Consensus pattern (27 bp):
GTATTTCAGTAATTTTACAAATCGAGG
Found at i:2839864 original size:40 final size:40
Alignment explanation
Indices: 2839804--2840028 Score: 263
Period size: 40 Copynumber: 5.6 Consensus size: 40
2839794 TATTCGGATG
*
2839804 ATATCCGGGCTAAGTTCCGAAGGCATTTGTGCAAGTTACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
*
2839844 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGC-A--AGTTACT
* * *
2839887 ATACCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
* * * * **
2839927 ATTTCCGAGCTAAGACCCGAAGGCATGTGTGTGAGTTACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
* * * * *
2839967 ATATCCGGGTTAAGTTCCGAAGGCATTTGTGCGAGTTGCG
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
*
2840007 ATATCC-GGCTAAATCCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGG
2840029 TACTTGGTTT
Statistics
Matches: 156, Mismatches: 26, Indels: 7
0.83 0.14 0.04
Matches are distributed among these distances:
39 13 0.08
40 105 0.67
41 1 0.01
43 37 0.24
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
Found at i:2839947 original size:83 final size:80
Alignment explanation
Indices: 2839808--2840028 Score: 259
Period size: 83 Copynumber: 2.7 Consensus size: 80
2839798 CGGATGATAT
* * *
2839808 CCGGGCTAAGTTCCGAAGGCATTTGTGCAAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTTCCGAAGGCATTTGTGCAAGTGACTATATCCGAGCTAAGACCCGAAGGCA--TG
*
2839873 TGCGAGTAGTTGCTATAC
64 TGCGAG-AGTTACTATAC
* * *
2839891 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATTTCCGAGCTAAGACCCGAAGGCATGTG
1 CCGGGCTAAGTTCCGAAGGCATTTGTGCAAGTGACTATATCCGAGCTAAGACCCGAAGGCATGTG
* * *
2839956 TGTGAGTTACTATAT
66 CGAGAGTTACTATAC
* * *
2839971 CCGGGTTAAGTTCCGAAGGCATTTGTGCGAGTTG-CGATATCCG-GCTAA-ATCCCGAAGG
1 CCGGGCTAAGTTCCGAAGGCATTTGTGCAAG-TGACTATATCCGAGCTAAGA-CCCGAAGG
2840029 TACTTGGTTT
Statistics
Matches: 121, Mismatches: 15, Indels: 8
0.84 0.10 0.06
Matches are distributed among these distances:
78 1 0.01
79 13 0.11
80 44 0.36
81 8 0.07
83 55 0.45
ACGTcount: A:0.23, C:0.22, G:0.29, T:0.27
Consensus pattern (80 bp):
CCGGGCTAAGTTCCGAAGGCATTTGTGCAAGTGACTATATCCGAGCTAAGACCCGAAGGCATGTG
CGAGAGTTACTATAC
Found at i:2842053 original size:27 final size:27
Alignment explanation
Indices: 2842022--2842181 Score: 196
Period size: 27 Copynumber: 6.0 Consensus size: 27
2842012 TAGGGAAAAT
* * *
2842022 CAGTCACTTTACCTTATAGGGGTATTA
1 CAGTCAGTTTACCCTATGGGGGTATTA
* *
2842049 CAGTCATTTTACCCTATGGGGGTATTT
1 CAGTCAGTTTACCCTATGGGGGTATTA
*
2842076 CGGTCAGTTTACCCTATGGGGGTATTA
1 CAGTCAGTTTACCCTATGGGGGTATTA
* *
2842103 CAGTCATTTTACCCTATGGGGGTATTT
1 CAGTCAGTTTACCCTATGGGGGTATTA
*
2842130 CGGTCAGTTTACCCTATGGGGGTATT-
1 CAGTCAGTTTACCCTATGGGGGTATTA
** * *
2842156 TTGTCATTTTACCCAATGGGGGTATT
1 CAGTCAGTTTACCCTATGGGGGTATT
2842182 TCGGTTATCA
Statistics
Matches: 117, Mismatches: 16, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
26 22 0.19
27 95 0.81
ACGTcount: A:0.19, C:0.18, G:0.24, T:0.38
Consensus pattern (27 bp):
CAGTCAGTTTACCCTATGGGGGTATTA
Found at i:2842098 original size:54 final size:54
Alignment explanation
Indices: 2842024--2842186 Score: 265
Period size: 54 Copynumber: 3.0 Consensus size: 54
2842014 GGGAAAATCA
* * *
2842024 GTCACTTTACCTTATAGGGGTATTACAGTCATTTTACCCTATGGGGGTATTTCG
1 GTCAGTTTACCCTATGGGGGTATTACAGTCATTTTACCCTATGGGGGTATTTCG
2842078 GTCAGTTTACCCTATGGGGGTATTACAGTCATTTTACCCTATGGGGGTATTTCG
1 GTCAGTTTACCCTATGGGGGTATTACAGTCATTTTACCCTATGGGGGTATTTCG
** *
2842132 GTCAGTTTACCCTATGGGGGTATT-TTGTCATTTTACCCAATGGGGGTATTTCG
1 GTCAGTTTACCCTATGGGGGTATTACAGTCATTTTACCCTATGGGGGTATTTCG
2842185 GT
1 GT
2842187 TATCATTTAG
Statistics
Matches: 103, Mismatches: 6, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
53 28 0.27
54 75 0.73
ACGTcount: A:0.18, C:0.18, G:0.25, T:0.39
Consensus pattern (54 bp):
GTCAGTTTACCCTATGGGGGTATTACAGTCATTTTACCCTATGGGGGTATTTCG
Found at i:2846864 original size:27 final size:27
Alignment explanation
Indices: 2846814--2846894 Score: 90
Period size: 27 Copynumber: 3.0 Consensus size: 27
2846804 CGTAGGGCAA
* * *
2846814 ACAGTCATTTTACCTTACAAGGGTATT
1 ACAGTCATTTTACCCTATAGGGGTATT
*
2846841 ACATTCATTTTACCCTATAGGGGTATT
1 ACAGTCATTTTACCCTATAGGGGTATT
** * *
2846868 TTAGTAATTTTACCCTATAGAGGTATT
1 ACAGTCATTTTACCCTATAGGGGTATT
2846895 TTGGTCATCA
Statistics
Matches: 45, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 45 1.00
ACGTcount: A:0.28, C:0.16, G:0.15, T:0.41
Consensus pattern (27 bp):
ACAGTCATTTTACCCTATAGGGGTATT
Found at i:2850602 original size:40 final size:40
Alignment explanation
Indices: 2850504--2851006 Score: 805
Period size: 40 Copynumber: 12.6 Consensus size: 40
2850494 TCCTCGTTCA
* * * * *
2850504 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
*
2850543 AATGCCTTCGGGACATAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
2850583 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
2850623 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
2850663 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
2850703 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
2850743 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
2850783 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
2850823 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
2850863 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * *
2850903 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* ** * * * *
2850943 AAGGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCAC-
1 AATGCCTTCGGGA-CTTAACCCGGATTTAATAAC-TCGCACG
* *
2850983 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
2851007 CAGCATTCAA
Statistics
Matches: 442, Mismatches: 18, Indels: 7
0.95 0.04 0.01
Matches are distributed among these distances:
39 38 0.09
40 396 0.90
41 8 0.02
ACGTcount: A:0.27, C:0.27, G:0.20, T:0.25
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:2851015 original size:41 final size:41
Alignment explanation
Indices: 2850938--2851015 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
2850928 TTAGTATCTC
* * *
2850938 GCACAAAGGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAAGGCCTTCGGATCTTAGCCCGGACACATTCACTTA
2850979 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAAGGCCTTC-GGATCTTAGCCCGGACA-CATTCA
2851016 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.23
Consensus pattern (41 bp):
GCACAAAGGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:2857422 original size:27 final size:27
Alignment explanation
Indices: 2857391--2857473 Score: 114
Period size: 27 Copynumber: 3.1 Consensus size: 27
2857381 CAAATTAGTT
* *
2857391 ATTTTACCTTATAGGGGTATTACAGTC
1 ATTTTACCCTATGGGGGTATTACAGTC
*
2857418 ATTTTACCCTATGGGGGTATTTCCA-TC
1 ATTTTACCCTATGGGGGTA-TTACAGTC
*
2857445 ATTTTACCCTATGGGGGTATTTCAGTC
1 ATTTTACCCTATGGGGGTATTACAGTC
2857472 AT
1 AT
2857474 AATTTCGGCC
Statistics
Matches: 50, Mismatches: 4, Indels: 4
0.86 0.07 0.07
Matches are distributed among these distances:
26 4 0.08
27 42 0.84
28 4 0.08
ACGTcount: A:0.22, C:0.18, G:0.19, T:0.41
Consensus pattern (27 bp):
ATTTTACCCTATGGGGGTATTACAGTC
Done.