Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr3
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 100348136
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 3062571 characters in sequence are not A, C, G, or T
File 90 of 290
Found at i:30251637 original size:3 final size:3
Alignment explanation
Indices: 30251629--30251656 Score: 56
Period size: 3 Copynumber: 9.3 Consensus size: 3
30251619 AATGCATAAC
30251629 ATA ATA ATA ATA ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA A
30251657 CAAAACAAAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
ATA
Found at i:30257967 original size:19 final size:19
Alignment explanation
Indices: 30257943--30257989 Score: 85
Period size: 19 Copynumber: 2.5 Consensus size: 19
30257933 AATGTACTTG
30257943 TGTCTTTAAGTGACATTTA
1 TGTCTTTAAGTGACATTTA
*
30257962 TGTCTTTAAGTGACTTTTA
1 TGTCTTTAAGTGACATTTA
30257981 TGTCTTTAA
1 TGTCTTTAA
30257990 ATGTTGAATT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
19 27 1.00
ACGTcount: A:0.23, C:0.11, G:0.15, T:0.51
Consensus pattern (19 bp):
TGTCTTTAAGTGACATTTA
Found at i:30259619 original size:30 final size:29
Alignment explanation
Indices: 30259585--30259644 Score: 77
Period size: 29 Copynumber: 2.0 Consensus size: 29
30259575 GATAATAATT
30259585 AAATAAGTA-TTCAAAATTTTTAAAATTTAA
1 AAATAAGTACTT-AAAA-TTTTAAAATTTAA
* *
30259615 AAATAATTACTTAATATTTTAAAATTTAA
1 AAATAAGTACTTAAAATTTTAAAATTTAA
30259644 A
1 A
30259645 TTTTGATGAA
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
29 14 0.52
30 11 0.41
31 2 0.07
ACGTcount: A:0.53, C:0.03, G:0.02, T:0.42
Consensus pattern (29 bp):
AAATAAGTACTTAAAATTTTAAAATTTAA
Found at i:30259856 original size:17 final size:18
Alignment explanation
Indices: 30259834--30259872 Score: 53
Period size: 19 Copynumber: 2.2 Consensus size: 18
30259824 TTTAGTCATC
30259834 AAATT-ATAATTTTTTTA
1 AAATTAATAATTTTTTTA
*
30259851 AAATTAAATGATTTTTTTA
1 AAATT-AATAATTTTTTTA
30259870 AAA
1 AAA
30259873 AAATTAAATA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
17 5 0.26
19 14 0.74
ACGTcount: A:0.46, C:0.00, G:0.03, T:0.51
Consensus pattern (18 bp):
AAATTAATAATTTTTTTA
Found at i:30261677 original size:74 final size:74
Alignment explanation
Indices: 30261556--30261704 Score: 289
Period size: 74 Copynumber: 2.0 Consensus size: 74
30261546 TGAAGAAAAA
30261556 TATTTTGATTTAAGGAGGTGATTAAAAACTAAGATTTTCAACTAAGTAAAATAAATAAATAAATA
1 TATTTTGATTTAAGGAGGTGATTAAAAACTAAGATTTTCAACTAAGTAAAATAAATAAATAAATA
30261621 ATAAAAATT
66 ATAAAAATT
*
30261630 TATTTTGATTTAAGGAGGTGATTAAAAACTAAGATTTTTAACTAAGTAAAATAAATAAATAAATA
1 TATTTTGATTTAAGGAGGTGATTAAAAACTAAGATTTTCAACTAAGTAAAATAAATAAATAAATA
30261695 ATAAAAATT
66 ATAAAAATT
30261704 T
1 T
30261705 CAACGCACGA
Statistics
Matches: 74, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
74 74 1.00
ACGTcount: A:0.51, C:0.03, G:0.11, T:0.35
Consensus pattern (74 bp):
TATTTTGATTTAAGGAGGTGATTAAAAACTAAGATTTTCAACTAAGTAAAATAAATAAATAAATA
ATAAAAATT
Found at i:30265413 original size:22 final size:22
Alignment explanation
Indices: 30265385--30265427 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
30265375 TATTTAACCC
30265385 AAATTAAATTAGATTA-AAATTA
1 AAATT-AATTAGATTATAAATTA
*
30265407 AAATTAATTATATTATAAATT
1 AAATTAATTAGATTATAAATT
30265428 GATACACATA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 9 0.47
22 10 0.53
ACGTcount: A:0.56, C:0.00, G:0.02, T:0.42
Consensus pattern (22 bp):
AAATTAATTAGATTATAAATTA
Found at i:30265643 original size:27 final size:27
Alignment explanation
Indices: 30265591--30265644 Score: 65
Period size: 27 Copynumber: 2.0 Consensus size: 27
30265581 TATTATAAAA
*
30265591 TTAAGTAAAATTCATTATGTTAATAAT
1 TTAAGTAAAATTAATTATGTTAATAAT
* *
30265618 TTAAGTACAATTTAATTAT-TTTATAAT
1 TTAAGTA-AAATTAATTATGTTAATAAT
30265645 AATTATATAT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
27 14 0.61
28 9 0.39
ACGTcount: A:0.43, C:0.04, G:0.06, T:0.48
Consensus pattern (27 bp):
TTAAGTAAAATTAATTATGTTAATAAT
Found at i:30272874 original size:2 final size:2
Alignment explanation
Indices: 30272867--30273668 Score: 1586
Period size: 2 Copynumber: 401.0 Consensus size: 2
30272857 ACGTGTGAAA
* *
30272867 AG AG AG AG AG AG AT AG AG AG AG TG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
30272909 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
30272951 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
30272993 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
30273035 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
30273077 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
30273119 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
30273161 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
30273203 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
30273245 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
30273287 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
30273329 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
30273371 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
30273413 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
30273455 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
30273497 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
30273539 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
30273581 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
30273623 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
30273665 AG AG
1 AG AG
30273669 TGTGTGTGTG
Statistics
Matches: 796, Mismatches: 4, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 796 1.00
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (2 bp):
AG
Found at i:30273673 original size:2 final size:2
Alignment explanation
Indices: 30273668--30273956 Score: 398
Period size: 2 Copynumber: 144.5 Consensus size: 2
30273658 GAGAGAGAGA
30273668 GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT
1 GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT
30273710 GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT
1 GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT
* * * * * * * *
30273752 GT GA GA GA GA GA GA GA GA GT GT GT GT GT GT GT GT GT GT GT GT
1 GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT
* * * *
30273794 GT GT GT GT GT GT GT GT GT GT GT GT GG GA GA GA GT GT GT GT GT
1 GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT
30273836 GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT
1 GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT
* * * * * *
30273878 GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GA GA GA GA GA GA
1 GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT
* *
30273920 GA GA GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT G
1 GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT G
30273957 GTGAGACATT
Statistics
Matches: 280, Mismatches: 7, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
2 280 1.00
ACGTcount: A:0.07, C:0.00, G:0.51, T:0.43
Consensus pattern (2 bp):
GT
Found at i:30276981 original size:18 final size:19
Alignment explanation
Indices: 30276948--30276983 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
30276938 TAATTATCAA
*
30276948 TAAAATAAAAATAAATAAT
1 TAAAACAAAAATAAATAAT
30276967 TAAAACAAAAA-AAATAA
1 TAAAACAAAAATAAATAA
30276984 CTAATTTAGT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 6 0.38
19 10 0.62
ACGTcount: A:0.78, C:0.03, G:0.00, T:0.19
Consensus pattern (19 bp):
TAAAACAAAAATAAATAAT
Found at i:30277014 original size:17 final size:17
Alignment explanation
Indices: 30276994--30277029 Score: 63
Period size: 17 Copynumber: 2.1 Consensus size: 17
30276984 CTAATTTAGT
*
30276994 AATTGAACTTACGATAC
1 AATTGAACCTACGATAC
30277011 AATTGAACCTACGATAC
1 AATTGAACCTACGATAC
30277028 AA
1 AA
30277030 AATAAGTCGT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.44, C:0.19, G:0.11, T:0.25
Consensus pattern (17 bp):
AATTGAACCTACGATAC
Found at i:30277059 original size:17 final size:17
Alignment explanation
Indices: 30277037--30277070 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
30277027 CAAAATAAGT
30277037 CGTAGTGGTGAAGTTTA
1 CGTAGTGGTGAAGTTTA
30277054 CGTAGTGGTGAAGTTTA
1 CGTAGTGGTGAAGTTTA
30277071 TCTTTAGTTA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.24, C:0.06, G:0.35, T:0.35
Consensus pattern (17 bp):
CGTAGTGGTGAAGTTTA
Found at i:30279764 original size:68 final size:68
Alignment explanation
Indices: 30279615--30279742 Score: 166
Period size: 68 Copynumber: 1.9 Consensus size: 68
30279605 TAGCTAAGCT
* * * * * * *
30279615 ATGGTCTTAAACAATATGGTCCCATGTTTAATGTCCTGGCGAACTCCCTTTATTACCATATCCGA
1 ATGGTCTTACATATTATGGTCCCATATTGAACGTCCTGACGAACTCCCTTTATTACCATATCCGA
30279680 GTA
66 GTA
* * *
30279683 ATGGTCTTACATATTATGGTCCCATATTGAACGTCCTGACGGACTTCCTTTGTTACCATA
1 ATGGTCTTACATATTATGGTCCCATATTGAACGTCCTGACGAACTCCCTTTATTACCATA
30279743 GTCGAGCTCT
Statistics
Matches: 50, Mismatches: 10, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
68 50 1.00
ACGTcount: A:0.25, C:0.23, G:0.16, T:0.35
Consensus pattern (68 bp):
ATGGTCTTACATATTATGGTCCCATATTGAACGTCCTGACGAACTCCCTTTATTACCATATCCGA
GTA
Found at i:30285778 original size:42 final size:42
Alignment explanation
Indices: 30285731--30285812 Score: 146
Period size: 42 Copynumber: 2.0 Consensus size: 42
30285721 ATATATTTTT
* *
30285731 AAATTTTATAATAATTTATTTTCATAAATGAAACAACTATTG
1 AAATTTTATAATAATTTATTTTCAAAAATAAAACAACTATTG
30285773 AAATTTTATAATAATTTATTTTCAAAAATAAAACAACTAT
1 AAATTTTATAATAATTTATTTTCAAAAATAAAACAACTAT
30285813 ATAATTATAT
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
42 38 1.00
ACGTcount: A:0.49, C:0.07, G:0.02, T:0.41
Consensus pattern (42 bp):
AAATTTTATAATAATTTATTTTCAAAAATAAAACAACTATTG
Found at i:30288391 original size:40 final size:40
Alignment explanation
Indices: 30288347--30288423 Score: 127
Period size: 40 Copynumber: 1.9 Consensus size: 40
30288337 ACACATCATG
*
30288347 TGGGGATAGAATCGACCCACCCAACCCTACACACCAAGTA
1 TGGGGATAGAATCAACCCACCCAACCCTACACACCAAGTA
* *
30288387 TGGGGATATAATCAACCCATCCAACCCTACACACCAA
1 TGGGGATAGAATCAACCCACCCAACCCTACACACCAA
30288424 AAGGTACCGT
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
40 34 1.00
ACGTcount: A:0.36, C:0.35, G:0.14, T:0.14
Consensus pattern (40 bp):
TGGGGATAGAATCAACCCACCCAACCCTACACACCAAGTA
Found at i:30288825 original size:18 final size:18
Alignment explanation
Indices: 30288787--30288821 Score: 63
Period size: 17 Copynumber: 2.0 Consensus size: 18
30288777 GTGTGCCTTA
30288787 CCCGTGTAGGCCCACACG
1 CCCGTGTAGGCCCACACG
30288805 CCCGTGTA-GCCCACACG
1 CCCGTGTAGGCCCACACG
30288822 GCCCAACTTG
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 9 0.53
18 8 0.47
ACGTcount: A:0.17, C:0.46, G:0.26, T:0.11
Consensus pattern (18 bp):
CCCGTGTAGGCCCACACG
Found at i:30289067 original size:144 final size:145
Alignment explanation
Indices: 30288813--30289096 Score: 489
Period size: 144 Copynumber: 2.0 Consensus size: 145
30288803 CGCCCGTGTA
*
30288813 GCCCACACGGCCCAACTTGTCTTTGCCCGTGTGGATCACACGGTTTGGACCAAAGTCCCACACGC
1 GCCCACACGGCCCAACTTGTCTTTGCCCGTGTGGATCACACGGTCTGGACCAAAGTCCCACACGC
* * *
30288878 CCGTGTGGCTTACCCACACGCCCGTGCAGCCTACACGGCCCAATTGGTCGAGCCTGTGCCTAGCA
66 CCGTGTAGCTTACCCACACGCCCGTACAGCCTACACGGCCCAATTGGTAGAGCCTGTGCCTAGCA
30288943 CACGGCCTCGTGTGG
131 CACGGCCTCGTGTGG
* *
30288958 GCCCACACGGCCGAACTTGTCTTTGCCCGTGTGGATTACAC-GTCTGGACCAAAGTCCCACACGC
1 GCCCACACGGCCCAACTTGTCTTTGCCCGTGTGGATCACACGGTCTGGACCAAAGTCCCACACGC
* *
30289022 CCGTGTAGCTTACCCACATGCCCGTACGGCCTACACGGCCCAATTGGTAGAGCCTGTGCCTAGCA
66 CCGTGTAGCTTACCCACACGCCCGTACAGCCTACACGGCCCAATTGGTAGAGCCTGTGCCTAGCA
30289087 CACGGCCTCG
131 CACGGCCTCG
30289097 CCAGCCACAC
Statistics
Matches: 131, Mismatches: 8, Indels: 1
0.94 0.06 0.01
Matches are distributed among these distances:
144 92 0.70
145 39 0.30
ACGTcount: A:0.18, C:0.37, G:0.25, T:0.19
Consensus pattern (145 bp):
GCCCACACGGCCCAACTTGTCTTTGCCCGTGTGGATCACACGGTCTGGACCAAAGTCCCACACGC
CCGTGTAGCTTACCCACACGCCCGTACAGCCTACACGGCCCAATTGGTAGAGCCTGTGCCTAGCA
CACGGCCTCGTGTGG
Found at i:30289171 original size:144 final size:142
Alignment explanation
Indices: 30288812--30289133 Score: 382
Period size: 144 Copynumber: 2.2 Consensus size: 142
30288802 ACGCCCGTGT
* ** **
30288812 AGCCCACACGGCCCAACTTGTCTTTGCCCGTGTGGA-TCACACGGTTTGGACCAAAGTCCCACAC
1 AGCCCACACGGCCGAACTTGTCTGCGCCCGTGTGGACT-ACAC-GCCTGGA-CAAAGTCCCACAC
* * *
30288876 GCCCGTGTGGCTTACCCACACGCCCGTGCAGCCTACACGGCCCAATTGGTCGAGCCTGTGCCTAG
63 GCCCGTGTAGCTTACCCACACGCCCGTACAGCCTACACGGCCCAATTGGTAGAGCCTGTGCCTAG
**
30288941 CACACGGCCTCGTGTG
128 CACACGGCCTCG-GCC
* ** * *
30288957 GGCCCACACGGCCGAACTTGTCTTTGCCCGTGTGGATTACACGTCTGGACCAAAGTCCCACACGC
1 AGCCCACACGGCCGAACTTGTCTGCGCCCGTGTGGACTACACGCCTGGA-CAAAGTCCCACACGC
* *
30289022 CCGTGTAGCTTACCCACATGCCCGTACGGCCTACACGGCCCAATTGGTAGAGCCTGTGCCTAGCA
65 CCGTGTAGCTTACCCACACGCCCGTACAGCCTACACGGCCCAATTGGTAGAGCCTGTGCCTAGCA
30289087 CACGGCCTC-GCC
130 CACGGCCTCGGCC
**
30289099 AGCCACACACGGCC-ATGTCTGTC-GCGCCCGTGTGG
1 AGCC-CACACGGCCGAACT-TGTCTGCGCCCGTGTGG
30289134 CTAGCGTACG
Statistics
Matches: 159, Mismatches: 15, Indels: 9
0.87 0.08 0.05
Matches are distributed among these distances:
142 16 0.10
143 13 0.08
144 91 0.57
145 38 0.24
146 1 0.01
ACGTcount: A:0.18, C:0.37, G:0.26, T:0.19
Consensus pattern (142 bp):
AGCCCACACGGCCGAACTTGTCTGCGCCCGTGTGGACTACACGCCTGGACAAAGTCCCACACGCC
CGTGTAGCTTACCCACACGCCCGTACAGCCTACACGGCCCAATTGGTAGAGCCTGTGCCTAGCAC
ACGGCCTCGGCC
Found at i:30295680 original size:38 final size:40
Alignment explanation
Indices: 30295638--30295732 Score: 113
Period size: 40 Copynumber: 2.4 Consensus size: 40
30295628 CCATCTTCGA
* *
30295638 CCAACCCAACACACCATGTA-GG-GATAGAATCGACCCAC
1 CCAACCCAACACACCAAGTATGGAGATAGAATCAACCCAC
* * *
30295676 CCAACCCTACACACCAAGTATGGAGATATAATCAACCCAT
1 CCAACCCAACACACCAAGTATGGAGATAGAATCAACCCAC
* *
30295716 CTAACCCCACACACCAA
1 CCAACCCAACACACCAA
30295733 AAGGTACCGT
Statistics
Matches: 48, Mismatches: 7, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
38 18 0.38
39 2 0.04
40 28 0.58
ACGTcount: A:0.39, C:0.38, G:0.11, T:0.13
Consensus pattern (40 bp):
CCAACCCAACACACCAAGTATGGAGATAGAATCAACCCAC
Found at i:30296189 original size:21 final size:21
Alignment explanation
Indices: 30296165--30296204 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
30296155 ACACCCGTAT
*
30296165 GGCTAACCCACACGCTCATGC
1 GGCTAACCCACACACTCATGC
*
30296186 GGCTCACCCACACACTCAT
1 GGCTAACCCACACACTCAT
30296205 ACGACCTACA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.25, C:0.45, G:0.15, T:0.15
Consensus pattern (21 bp):
GGCTAACCCACACACTCATGC
Found at i:30304252 original size:23 final size:25
Alignment explanation
Indices: 30304217--30304267 Score: 79
Period size: 24 Copynumber: 2.1 Consensus size: 25
30304207 CAAAAAATCA
*
30304217 TAAACCCTAAAAA-ATTTAAAACCC
1 TAAACCCTAAAAATATTAAAAACCC
30304241 TAAA-CCTAAAAATATTAAAAACCC
1 TAAACCCTAAAAATATTAAAAACCC
30304265 TAA
1 TAA
30304268 CCTTGGGAGA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
23 8 0.32
24 17 0.68
ACGTcount: A:0.57, C:0.22, G:0.00, T:0.22
Consensus pattern (25 bp):
TAAACCCTAAAAATATTAAAAACCC
Found at i:30311985 original size:16 final size:18
Alignment explanation
Indices: 30311950--30311987 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
30311940 ATCCTTATTT
*
30311950 AAATGAAATACAATAGTA
1 AAATAAAATACAATAGTA
30311968 AAATAAAATA-AA-AGTA
1 AAATAAAATACAATAGTA
30311984 AAAT
1 AAAT
30311988 CCATATAGAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
16 8 0.42
17 2 0.11
18 9 0.47
ACGTcount: A:0.68, C:0.03, G:0.08, T:0.21
Consensus pattern (18 bp):
AAATAAAATACAATAGTA
Found at i:30318142 original size:42 final size:42
Alignment explanation
Indices: 30318096--30318217 Score: 156
Period size: 43 Copynumber: 2.9 Consensus size: 42
30318086 TACTATACTA
* ** *
30318096 ATGCCATATCCTAGATATGGTCTTACATGGGATTTCATATCG
1 ATGCCATATCCCAGATATGGTCTTACATGAAATCTCATATCG
*
30318138 ATGCCGATAGCCCAGCA-ATGGTCTTACATGAAATCTCATATCG
1 ATGCC-ATATCCCAG-ATATGGTCTTACATGAAATCTCATATCG
* *
30318181 ATGCCATATCCCAGATATGGTCTTACACGTAATCTCA
1 ATGCCATATCCCAGATATGGTCTTACATGAAATCTCA
30318218 ACTAACCCTA
Statistics
Matches: 69, Mismatches: 8, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
41 1 0.01
42 32 0.46
43 35 0.51
44 1 0.01
ACGTcount: A:0.29, C:0.24, G:0.17, T:0.30
Consensus pattern (42 bp):
ATGCCATATCCCAGATATGGTCTTACATGAAATCTCATATCG
Found at i:30324578 original size:12 final size:12
Alignment explanation
Indices: 30324561--30324587 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
30324551 TGGTTATTGT
30324561 TGTAGCAGCTTC
1 TGTAGCAGCTTC
30324573 TGTAGCAGCTTC
1 TGTAGCAGCTTC
30324585 TGT
1 TGT
30324588 TTTTTGTATG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.15, C:0.22, G:0.26, T:0.37
Consensus pattern (12 bp):
TGTAGCAGCTTC
Found at i:30327067 original size:93 final size:92
Alignment explanation
Indices: 30326935--30327129 Score: 286
Period size: 93 Copynumber: 2.1 Consensus size: 92
30326925 TTGATTTTAG
* *
30326935 TAAATTCATATAAGAACATTTTATTATTAAGAATTTTATGAAATTATATATCACTA-TATAATTA
1 TAAATTCATATAAGAAAATTTTATTATCAAGAATTTTATGAAATTATATATCACTATTA-AATTA
* *
30326999 TATTTAAT-ATTAATTATTTTAAATTGTA
65 TATGTAATAATT-ATTATTTTAAATTATA
* *
30327027 TAAATTCATATAAGAAAATTTTTATTATCAAGAATTTTATGAAATTATATATTATTATTAAATTA
1 TAAATTCATATAAGAAAA-TTTTATTATCAAGAATTTTATGAAATTATATATCACTATTAAATTA
30327092 TATGTAATAATTATTATTTTAAATTATA
65 TATGTAATAATTATTATTTTAAATTATA
*
30327120 CAAATTCATA
1 TAAATTCATA
30327130 AACTATAATC
Statistics
Matches: 93, Mismatches: 7, Indels: 5
0.89 0.07 0.05
Matches are distributed among these distances:
92 17 0.18
93 71 0.76
94 5 0.05
ACGTcount: A:0.45, C:0.04, G:0.04, T:0.47
Consensus pattern (92 bp):
TAAATTCATATAAGAAAATTTTATTATCAAGAATTTTATGAAATTATATATCACTATTAAATTAT
ATGTAATAATTATTATTTTAAATTATA
Found at i:30327177 original size:48 final size:52
Alignment explanation
Indices: 30327107--30327205 Score: 118
Period size: 52 Copynumber: 2.0 Consensus size: 52
30327097 AATAATTATT
30327107 ATTTTAAATTATACAAATTCATA-AACT-A-T-AATCATATTAGTTATAATA
1 ATTTTAAATTATACAAATTCATATAACTAATTAAATCATATTAGTTATAATA
* * **
30327155 ATTTTAAATTTTATTAAA-TCATATATTTAATTAAATCATATTAGTTATAAT
1 ATTTTAAATTATA-CAAATTCATATAACTAATTAAATCATATTAGTTATAAT
30327206 CATATATTAT
Statistics
Matches: 42, Mismatches: 4, Indels: 6
0.81 0.08 0.12
Matches are distributed among these distances:
48 17 0.40
49 5 0.12
50 1 0.02
51 1 0.02
52 18 0.43
ACGTcount: A:0.45, C:0.06, G:0.02, T:0.46
Consensus pattern (52 bp):
ATTTTAAATTATACAAATTCATATAACTAATTAAATCATATTAGTTATAATA
Found at i:30327187 original size:17 final size:17
Alignment explanation
Indices: 30327162--30327195 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
30327152 ATAATTTTAA
*
30327162 ATTTTATTAAATCATAT
1 ATTTAATTAAATCATAT
30327179 ATTTAATTAAATCATAT
1 ATTTAATTAAATCATAT
30327196 TAGTTATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.44, C:0.06, G:0.00, T:0.50
Consensus pattern (17 bp):
ATTTAATTAAATCATAT
Found at i:30327212 original size:17 final size:16
Alignment explanation
Indices: 30327167--30327214 Score: 55
Period size: 17 Copynumber: 3.0 Consensus size: 16
30327157 TTTAAATTTT
30327167 ATTAAATCATATATTTA
1 ATTAAATCATATA-TTA
30327184 ATTAAATC--ATATTA
1 ATTAAATCATATATTA
*
30327198 GTTATAATCATATATTA
1 ATTA-AATCATATATTA
30327215 TGATTTGAGT
Statistics
Matches: 27, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
14 6 0.22
15 7 0.26
17 14 0.52
ACGTcount: A:0.46, C:0.06, G:0.02, T:0.46
Consensus pattern (16 bp):
ATTAAATCATATATTA
Found at i:30327283 original size:18 final size:17
Alignment explanation
Indices: 30327255--30327289 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
30327245 ATTATTAAGA
*
30327255 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
30327272 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
30327290 TAAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:30327291 original size:28 final size:27
Alignment explanation
Indices: 30327259--30327331 Score: 76
Period size: 28 Copynumber: 2.7 Consensus size: 27
30327249 TTAAGAATTT
30327259 TATTAAATTATATATTTTAATTAAAATA
1 TATTAAATTATATATTTT-ATTAAAATA
* * * *
30327287 TATTAAATAATA-ATTATGTTTAAATA
1 TATTAAATTATATATTTTATTAAAATA
*
30327313 TGATTAAATTATTTATTTT
1 T-ATTAAATTATATATTTT
30327332 TGATAATAAA
Statistics
Matches: 36, Mismatches: 7, Indels: 4
0.77 0.15 0.09
Matches are distributed among these distances:
26 8 0.22
27 13 0.36
28 15 0.42
ACGTcount: A:0.45, C:0.00, G:0.03, T:0.52
Consensus pattern (27 bp):
TATTAAATTATATATTTTATTAAAATA
Found at i:30327500 original size:44 final size:45
Alignment explanation
Indices: 30327451--30327545 Score: 138
Period size: 45 Copynumber: 2.1 Consensus size: 45
30327441 TTACACCTCT
* *
30327451 ATTACATTCAACCAAACA-CAGTTTTACTATTACGCCTCTATTCC
1 ATTACATTCAACCAAACAGCAGATTTACTATTACACCTCTATTCC
** *
30327495 ATTACATTCAACCAAACAGTTGATTTGCTATTACACCTCTATTCC
1 ATTACATTCAACCAAACAGCAGATTTACTATTACACCTCTATTCC
30327540 ATTACA
1 ATTACA
30327546 CCTCTAATCC
Statistics
Matches: 45, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
44 18 0.40
45 27 0.60
ACGTcount: A:0.33, C:0.27, G:0.05, T:0.35
Consensus pattern (45 bp):
ATTACATTCAACCAAACAGCAGATTTACTATTACACCTCTATTCC
Found at i:30327545 original size:16 final size:16
Alignment explanation
Indices: 30327524--30327556 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
30327514 TTGATTTGCT
*
30327524 ATTACACCTCTATTCC
1 ATTACACCTCTAATCC
30327540 ATTACACCTCTAATCC
1 ATTACACCTCTAATCC
30327556 A
1 A
30327557 ATCCAATACA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.30, C:0.36, G:0.00, T:0.33
Consensus pattern (16 bp):
ATTACACCTCTAATCC
Found at i:30327566 original size:21 final size:21
Alignment explanation
Indices: 30327537--30327579 Score: 77
Period size: 21 Copynumber: 2.0 Consensus size: 21
30327527 ACACCTCTAT
*
30327537 TCCATTACACCTCTAATCCAA
1 TCCAATACACCTCTAATCCAA
30327558 TCCAATACACCTCTAATCCAA
1 TCCAATACACCTCTAATCCAA
30327579 T
1 T
30327580 ACAGCGAACC
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.35, C:0.37, G:0.00, T:0.28
Consensus pattern (21 bp):
TCCAATACACCTCTAATCCAA
Found at i:30332872 original size:47 final size:47
Alignment explanation
Indices: 30332819--30332913 Score: 181
Period size: 47 Copynumber: 2.0 Consensus size: 47
30332809 GAATATAACA
*
30332819 GGGGAGCTAGTTGACAGTCGTTATGCGGACATGAGCTCAAAATTTTG
1 GGGGAGCGAGTTGACAGTCGTTATGCGGACATGAGCTCAAAATTTTG
30332866 GGGGAGCGAGTTGACAGTCGTTATGCGGACATGAGCTCAAAATTTTG
1 GGGGAGCGAGTTGACAGTCGTTATGCGGACATGAGCTCAAAATTTTG
30332913 G
1 G
30332914 ATACTCGGAG
Statistics
Matches: 47, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
47 47 1.00
ACGTcount: A:0.25, C:0.15, G:0.34, T:0.26
Consensus pattern (47 bp):
GGGGAGCGAGTTGACAGTCGTTATGCGGACATGAGCTCAAAATTTTG
Found at i:30335025 original size:28 final size:29
Alignment explanation
Indices: 30334994--30335077 Score: 79
Period size: 28 Copynumber: 3.0 Consensus size: 29
30334984 CTCTTCTGTT
30334994 CTTCTACATCTATTCTGCCTGATCTTG-A
1 CTTCTACATCTATTCTGCCTGATCTTGTA
* * *
30335022 CTTCTATGC-TCTAATCTTCTCT--TC-TGTT
1 CTTCTA--CATCTATTCTGC-CTGATCTTGTA
30335050 CTTCTACATCTATTCTGCCTGATCTTGT
1 CTTCTACATCTATTCTGCCTGATCTTGT
30335078 TTCAAACCAA
Statistics
Matches: 43, Mismatches: 5, Indels: 15
0.68 0.08 0.24
Matches are distributed among these distances:
26 3 0.07
27 10 0.23
28 16 0.37
29 11 0.26
30 3 0.07
ACGTcount: A:0.14, C:0.29, G:0.10, T:0.48
Consensus pattern (29 bp):
CTTCTACATCTATTCTGCCTGATCTTGTA
Found at i:30335037 original size:56 final size:56
Alignment explanation
Indices: 30334965--30335076 Score: 206
Period size: 56 Copynumber: 2.0 Consensus size: 56
30334955 CTCAAAGGTA
*
30334965 ACTTCTTTGCCCTAATCTTCTCTTCTGTTCTTCTACATCTATTCTGCCTGATCTTG
1 ACTTCTATGCCCTAATCTTCTCTTCTGTTCTTCTACATCTATTCTGCCTGATCTTG
*
30335021 ACTTCTATGCTCTAATCTTCTCTTCTGTTCTTCTACATCTATTCTGCCTGATCTTG
1 ACTTCTATGCCCTAATCTTCTCTTCTGTTCTTCTACATCTATTCTGCCTGATCTTG
30335077 TTTCAAACCA
Statistics
Matches: 54, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
56 54 1.00
ACGTcount: A:0.13, C:0.29, G:0.09, T:0.48
Consensus pattern (56 bp):
ACTTCTATGCCCTAATCTTCTCTTCTGTTCTTCTACATCTATTCTGCCTGATCTTG
Found at i:30337682 original size:44 final size:45
Alignment explanation
Indices: 30337618--30337712 Score: 174
Period size: 44 Copynumber: 2.1 Consensus size: 45
30337608 CCATAGAATT
30337618 AAGCCAAGGAAGACAAGACTGATGGGGGATGTATATGCTACTGCC
1 AAGCCAAGGAAGACAAGACTGATGGGGGATGTATATGCTACTGCC
*
30337663 -AGCCAAGGAAGACAAGACTGATGGTGGATGTATATGCTACTGCC
1 AAGCCAAGGAAGACAAGACTGATGGGGGATGTATATGCTACTGCC
30337707 AAGCCA
1 AAGCCA
30337713 TGCACTTTGG
Statistics
Matches: 48, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
44 43 0.90
45 5 0.10
ACGTcount: A:0.34, C:0.19, G:0.29, T:0.18
Consensus pattern (45 bp):
AAGCCAAGGAAGACAAGACTGATGGGGGATGTATATGCTACTGCC
Found at i:30342993 original size:25 final size:24
Alignment explanation
Indices: 30342947--30343047 Score: 82
Period size: 25 Copynumber: 4.2 Consensus size: 24
30342937 AAATGTTTTT
* * *
30342947 TTTAATTTATTAAATAATATATTA
1 TTTATTTTAATAATTAATATATTA
*
30342971 TTTATTTTAAGTAATTAATATATGA
1 TTTATTTTAA-TAATTAATATATTA
** * *
30342996 TTTAAATTATTAAAT-ATA-ATTA
1 TTTATTTTAATAATTAATATATTA
30343018 TTTATTTTAATAATTAA-ATTATTA
1 TTTATTTTAATAATTAATA-TATTA
30343042 TATTAT
1 T-TTAT
30343048 ATTCCATGAC
Statistics
Matches: 59, Mismatches: 13, Indels: 9
0.73 0.16 0.11
Matches are distributed among these distances:
22 15 0.25
23 4 0.07
24 17 0.29
25 23 0.39
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (24 bp):
TTTATTTTAATAATTAATATATTA
Found at i:30347116 original size:27 final size:27
Alignment explanation
Indices: 30347086--30347140 Score: 74
Period size: 27 Copynumber: 2.0 Consensus size: 27
30347076 AAAAAAATAA
*
30347086 TTTTATAATTCTTTTTAAAACTTTTATT
1 TTTTATAAAT-TTTTTAAAACTTTTATT
* *
30347114 TTTTATAAATTTTTTAATATTTTTATT
1 TTTTATAAATTTTTTAAAACTTTTATT
30347141 GATGAATTTT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
27 15 0.62
28 9 0.38
ACGTcount: A:0.29, C:0.04, G:0.00, T:0.67
Consensus pattern (27 bp):
TTTTATAAATTTTTTAAAACTTTTATT
Found at i:30347324 original size:6 final size:6
Alignment explanation
Indices: 30347314--30347365 Score: 86
Period size: 6 Copynumber: 8.7 Consensus size: 6
30347304 CCCATAAAAA
* *
30347314 CACATA CACATA CACATG CACATG CACATG CACATG CACATG CACATG
1 CACATG CACATG CACATG CACATG CACATG CACATG CACATG CACATG
30347362 CACA
1 CACA
30347366 CAACGCACAG
Statistics
Matches: 45, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
6 45 1.00
ACGTcount: A:0.38, C:0.35, G:0.12, T:0.15
Consensus pattern (6 bp):
CACATG
Found at i:30351445 original size:23 final size:22
Alignment explanation
Indices: 30351407--30351462 Score: 71
Period size: 23 Copynumber: 2.5 Consensus size: 22
30351397 TATAAAACCT
30351407 AATAAAAATAAGCTTAAAGA-AA
1 AATAAAAATAAGCTTAAA-ATAA
30351429 AATAAAAAGT-AGTCTTAAAATAA
1 AATAAAAA-TAAG-CTTAAAATAA
30351452 AATAAAAATAA
1 AATAAAAATAA
30351463 CAACATAAAA
Statistics
Matches: 30, Mismatches: 0, Indels: 7
0.81 0.00 0.19
Matches are distributed among these distances:
22 12 0.40
23 18 0.60
ACGTcount: A:0.68, C:0.04, G:0.07, T:0.21
Consensus pattern (22 bp):
AATAAAAATAAGCTTAAAATAA
Found at i:30372425 original size:24 final size:26
Alignment explanation
Indices: 30372375--30372427 Score: 74
Period size: 24 Copynumber: 2.1 Consensus size: 26
30372365 TTTTTGGAGA
*
30372375 AAAAAGGAGAGAGATTCGAATACAAG
1 AAAAAGGAGAGACATTCGAATACAAG
*
30372401 AAAAA-GAGAGACTTTC-AATACAAG
1 AAAAAGGAGAGACATTCGAATACAAG
30372425 AAA
1 AAA
30372428 TACACGAGAT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
24 11 0.44
25 9 0.36
26 5 0.20
ACGTcount: A:0.57, C:0.09, G:0.21, T:0.13
Consensus pattern (26 bp):
AAAAAGGAGAGACATTCGAATACAAG
Found at i:30372733 original size:3 final size:3
Alignment explanation
Indices: 30372725--30372807 Score: 112
Period size: 3 Copynumber: 27.7 Consensus size: 3
30372715 AATATAGTTG
*
30372725 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA CTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
* * * * *
30372773 TTA TTA TTT TTA TTT TTA TTA CTC TTA CTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
30372808 CTATCTACTA
Statistics
Matches: 68, Mismatches: 12, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
3 68 1.00
ACGTcount: A:0.29, C:0.05, G:0.00, T:0.66
Consensus pattern (3 bp):
TTA
Found at i:30373093 original size:25 final size:23
Alignment explanation
Indices: 30373065--30373123 Score: 55
Period size: 25 Copynumber: 2.4 Consensus size: 23
30373055 TTCTTCCTCT
*
30373065 ATTATTATCATTATTTTCTATTATC
1 ATTATTATCATT-TGTT-TATTATC
* *
30373090 ATTAATATGTCATTTGTTTATTATT
1 ATT-AT-TATCATTTGTTTATTATC
30373115 ATTATTATC
1 ATTATTATC
30373124 TTTAACACAA
Statistics
Matches: 28, Mismatches: 4, Indels: 6
0.74 0.11 0.16
Matches are distributed among these distances:
23 3 0.11
24 2 0.07
25 12 0.43
26 5 0.18
27 6 0.21
ACGTcount: A:0.29, C:0.08, G:0.03, T:0.59
Consensus pattern (23 bp):
ATTATTATCATTTGTTTATTATC
Found at i:30373180 original size:22 final size:24
Alignment explanation
Indices: 30373154--30373206 Score: 72
Period size: 25 Copynumber: 2.2 Consensus size: 24
30373144 TATATTTACT
*
30373154 TTTTTTTAA-TATTATTACCATTA
1 TTTTTTAAATTATTATTACCATTA
*
30373177 TTTTTTAAAATTATTATTACTATTA
1 TTTTTT-AAATTATTATTACCATTA
30373202 TTTTT
1 TTTTT
30373207 ATTATCCGTC
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
23 6 0.23
24 2 0.08
25 18 0.69
ACGTcount: A:0.30, C:0.06, G:0.00, T:0.64
Consensus pattern (24 bp):
TTTTTTAAATTATTATTACCATTA
Found at i:30373554 original size:125 final size:127
Alignment explanation
Indices: 30373372--30373633 Score: 347
Period size: 125 Copynumber: 2.1 Consensus size: 127
30373362 ATTTTTCAAG
* *
30373372 TAAAGGCAATATTCAGTACTTGAAAATTTGAGAAATCGTGTCCTAACGTACTGGGTTTCGATTTT
1 TAAAGGCAATATTCAGTACTTGAAAATTCGAGAAATCGTGTCCTAACGTACTGGGTTTCAATTTT
* * *
30373437 -TCGTTTGATCTAAGTAACCGATTATCC-TTTT-AAATTAAAATACATGAGTTTTAAATTAAA
66 CT-GTTTGATCTAAATAACCGAATATCCTTTTTAAAATTAAAATACATGAGTTTTAAATGAAA
* *
30373497 TAAAGGCAATATTTC-GTACTT-AGAAATTCGAGTAGTCGTG-CCTTAACGTACTGGGTTTCAAT
1 TAAAGGCAATA-TTCAGTACTTGA-AAATTCGAGAAATCGTGTCC-TAACGTACTGGGTTTCAAT
* * *
30373559 TTTCTGTTTGATCTAAATATCCGAATATCCTTTTTAAAATTTACATACATGAGTTTTAAATGAAA
63 TTTCTGTTTGATCTAAATAACCGAATATCCTTTTTAAAATTAAAATACATGAGTTTTAAATGAAA
30373624 TAGAAGGCAA
1 TA-AAGGCAA
30373634 GCTCATACTC
Statistics
Matches: 120, Mismatches: 10, Indels: 11
0.85 0.07 0.08
Matches are distributed among these distances:
124 3 0.03
125 74 0.62
126 8 0.07
127 28 0.23
128 7 0.06
ACGTcount: A:0.34, C:0.13, G:0.16, T:0.37
Consensus pattern (127 bp):
TAAAGGCAATATTCAGTACTTGAAAATTCGAGAAATCGTGTCCTAACGTACTGGGTTTCAATTTT
CTGTTTGATCTAAATAACCGAATATCCTTTTTAAAATTAAAATACATGAGTTTTAAATGAAA
Found at i:30373653 original size:125 final size:125
Alignment explanation
Indices: 30373407--30373675 Score: 307
Period size: 125 Copynumber: 2.2 Consensus size: 125
30373397 ATTTGAGAAA
* * *
30373407 TCGTGTCCTAACGTACTGGGTTTCGATTTTTCGTTTGATCTAAGTAACCGATTATCCTTTTAAAT
1 TCGTGTCCTAACGTACTGGGTTTCAATTTTTCGTTTGATCTAAATAACCGAATATCCTTTTAAAT
* ** * *
30373472 TAAAATACATGAGTTTTAAATTAAATAAAGGCAATATTTCGTACTTAGAAATTCGA-GTAG
66 TAAAATACATGAGTTTTAAATGAAATAAAGGCAATAGCTCATACTTAGAAAGTCGAGGT-G
*
30373532 TCGTG-CCTTAACGTACTGGGTTTCAA-TTTTCTGTTTGATCTAAATATCCGAATATCCTTTTTA
1 TCGTGTCC-TAACGTACTGGGTTTCAATTTTTC-GTTTGATCTAAATAACCGAATATCC-TTTT-
* * * **
30373595 AAATTTACATACATGAGTTTTAAATGAAATAGAAGGC-A-AGCTCATAC-TCGAGGGTCGAGGTG
62 AAATTAAAATACATGAGTTTTAAATGAAATA-AAGGCAATAGCTCATACTTAGAAAGTCGAGGTG
*
30373657 TTGTGTCCTAACGTACTGG
1 TCGTGTCCTAACGTACTGG
30373676 ATATAACATT
Statistics
Matches: 122, Mismatches: 15, Indels: 14
0.81 0.10 0.09
Matches are distributed among these distances:
124 7 0.06
125 67 0.55
126 14 0.11
127 29 0.24
128 5 0.04
ACGTcount: A:0.30, C:0.15, G:0.18, T:0.37
Consensus pattern (125 bp):
TCGTGTCCTAACGTACTGGGTTTCAATTTTTCGTTTGATCTAAATAACCGAATATCCTTTTAAAT
TAAAATACATGAGTTTTAAATGAAATAAAGGCAATAGCTCATACTTAGAAAGTCGAGGTG
Found at i:30374586 original size:13 final size:13
Alignment explanation
Indices: 30374568--30374606 Score: 51
Period size: 13 Copynumber: 2.9 Consensus size: 13
30374558 AATAAATATT
30374568 AAATTAAATTAAA
1 AAATTAAATTAAA
30374581 AAATTAAATTTAAA
1 AAATTAAA-TTAAA
* *
30374595 TATTTAAATTAA
1 AAATTAAATTAA
30374607 GGCTCCATTG
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
13 12 0.52
14 11 0.48
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (13 bp):
AAATTAAATTAAA
Found at i:30376167 original size:10 final size:10
Alignment explanation
Indices: 30376152--30376200 Score: 52
Period size: 10 Copynumber: 5.2 Consensus size: 10
30376142 TGTAGAGCAT
30376152 AATCAGTATG
1 AATCAGTATG
30376162 AATCAGTATG
1 AATCAGTATG
30376172 -A--AGTGAT-
1 AATCAGT-ATG
*
30376179 AATCAATATG
1 AATCAGTATG
30376189 AATCAGTATG
1 AATCAGTATG
30376199 AA
1 AA
30376201 GTGAGCGGTC
Statistics
Matches: 32, Mismatches: 2, Indels: 10
0.73 0.05 0.23
Matches are distributed among these distances:
7 3 0.09
8 3 0.09
9 3 0.09
10 23 0.72
ACGTcount: A:0.45, C:0.08, G:0.18, T:0.29
Consensus pattern (10 bp):
AATCAGTATG
Found at i:30376188 original size:27 final size:27
Alignment explanation
Indices: 30376150--30376204 Score: 101
Period size: 27 Copynumber: 2.0 Consensus size: 27
30376140 TTTGTAGAGC
*
30376150 ATAATCAGTATGAATCAGTATGAAGTG
1 ATAATCAATATGAATCAGTATGAAGTG
30376177 ATAATCAATATGAATCAGTATGAAGTG
1 ATAATCAATATGAATCAGTATGAAGTG
30376204 A
1 A
30376205 GCGGTCTTGG
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.44, C:0.07, G:0.20, T:0.29
Consensus pattern (27 bp):
ATAATCAATATGAATCAGTATGAAGTG
Found at i:30385425 original size:22 final size:23
Alignment explanation
Indices: 30385390--30385440 Score: 63
Period size: 23 Copynumber: 2.3 Consensus size: 23
30385380 TGTGTTTTCA
30385390 ATTTTTTCT-AAAAATA-AAAACT
1 ATTTTTTCTAAAAAATAGAAAA-T
30385412 ATTTTTT-TAAAAAAATAGAAAAT
1 ATTTTTTCT-AAAAAATAGAAAAT
30385435 ATTTTT
1 ATTTTT
30385441 AAAAATCAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
21 1 0.04
22 7 0.27
23 14 0.54
24 4 0.15
ACGTcount: A:0.49, C:0.04, G:0.02, T:0.45
Consensus pattern (23 bp):
ATTTTTTCTAAAAAATAGAAAAT
Found at i:30389110 original size:21 final size:21
Alignment explanation
Indices: 30389086--30389125 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
30389076 AGAAGATTCA
30389086 GCCTAGTAGAGGTATTATTTG
1 GCCTAGTAGAGGTATTATTTG
*
30389107 GCCTAGTGGAGGTATTATT
1 GCCTAGTAGAGGTATTATT
30389126 CGACAAGCTC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.23, C:0.10, G:0.30, T:0.38
Consensus pattern (21 bp):
GCCTAGTAGAGGTATTATTTG
Found at i:30395133 original size:2 final size:2
Alignment explanation
Indices: 30395126--30395173 Score: 60
Period size: 2 Copynumber: 24.0 Consensus size: 2
30395116 ATTCAAACTG
* * * *
30395126 CA CA CA CA CA CA CA CA CA CA TA CA AA CG CA GA CA CA CA CA CA
1 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA
30395168 CA CA CA
1 CA CA CA
30395174 TACATACAAA
Statistics
Matches: 38, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
2 38 1.00
ACGTcount: A:0.50, C:0.44, G:0.04, T:0.02
Consensus pattern (2 bp):
CA
Found at i:30395162 original size:18 final size:18
Alignment explanation
Indices: 30395139--30395191 Score: 51
Period size: 18 Copynumber: 3.2 Consensus size: 18
30395129 ACACACACAC
30395139 ACACACATACAAACGCAG
1 ACACACATACAAACGCAG
* *
30395157 ACACAC--AC--ACACAC
1 ACACACATACAAACGCAG
*
30395171 ACATACATACAAACGCAG
1 ACACACATACAAACGCAG
30395189 ACA
1 ACA
30395192 AAGGAATGCT
Statistics
Matches: 26, Mismatches: 5, Indels: 8
0.67 0.13 0.21
Matches are distributed among these distances:
14 9 0.35
16 4 0.15
18 13 0.50
ACGTcount: A:0.51, C:0.36, G:0.08, T:0.06
Consensus pattern (18 bp):
ACACACATACAAACGCAG
Found at i:30395167 original size:32 final size:32
Alignment explanation
Indices: 30395126--30395191 Score: 123
Period size: 32 Copynumber: 2.1 Consensus size: 32
30395116 ATTCAAACTG
30395126 CACACACACACACACACACATACAAACGCAGA
1 CACACACACACACACACACATACAAACGCAGA
*
30395158 CACACACACACACACATACATACAAACGCAGA
1 CACACACACACACACACACATACAAACGCAGA
30395190 CA
1 CA
30395192 AAGGAATGCT
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.50, C:0.39, G:0.06, T:0.05
Consensus pattern (32 bp):
CACACACACACACACACACATACAAACGCAGA
Found at i:30397928 original size:14 final size:15
Alignment explanation
Indices: 30397909--30397937 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
30397899 TGATTTTCGA
30397909 TTTTTTTCTT-TTTT
1 TTTTTTTCTTCTTTT
30397923 TTTTTTTCTTCTTTT
1 TTTTTTTCTTCTTTT
30397938 GGCTATTCAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 10 0.71
15 4 0.29
ACGTcount: A:0.00, C:0.10, G:0.00, T:0.90
Consensus pattern (15 bp):
TTTTTTTCTTCTTTT
Found at i:30400873 original size:9 final size:9
Alignment explanation
Indices: 30400844--30400874 Score: 53
Period size: 9 Copynumber: 3.4 Consensus size: 9
30400834 TAAAATTTAC
30400844 AATTCGAAT
1 AATTCGAAT
*
30400853 AACTCGAAT
1 AATTCGAAT
30400862 AATTCGAAT
1 AATTCGAAT
30400871 AATT
1 AATT
30400875 AAAAAACAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.45, C:0.13, G:0.10, T:0.32
Consensus pattern (9 bp):
AATTCGAAT
Found at i:30400927 original size:9 final size:10
Alignment explanation
Indices: 30400894--30400928 Score: 54
Period size: 10 Copynumber: 3.6 Consensus size: 10
30400884 ATTTTATGTG
*
30400894 TAAAAA-TTA
1 TAAAAATTTC
30400903 TAAAAATTTC
1 TAAAAATTTC
30400913 TAAAAATTTC
1 TAAAAATTTC
30400923 TAAAAA
1 TAAAAA
30400929 ATATATAAAG
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
9 6 0.25
10 18 0.75
ACGTcount: A:0.60, C:0.06, G:0.00, T:0.34
Consensus pattern (10 bp):
TAAAAATTTC
Found at i:30400928 original size:11 final size:11
Alignment explanation
Indices: 30400904--30400953 Score: 50
Period size: 11 Copynumber: 4.6 Consensus size: 11
30400894 TAAAAATTAT
30400904 AAAAATTTCT-
1 AAAAATTTCTA
30400914 AAAAATTTCTA
1 AAAAATTTCTA
* *
30400925 AAAAATATATA
1 AAAAATTTCTA
*
30400936 AAGAAAGTT-TA
1 AA-AAATTTCTA
30400947 AAAAATT
1 AAAAATT
30400954 AAAATCTTTG
Statistics
Matches: 33, Mismatches: 5, Indels: 4
0.79 0.12 0.10
Matches are distributed among these distances:
10 14 0.42
11 15 0.45
12 4 0.12
ACGTcount: A:0.60, C:0.04, G:0.04, T:0.32
Consensus pattern (11 bp):
AAAAATTTCTA
Found at i:30403030 original size:26 final size:25
Alignment explanation
Indices: 30402989--30403040 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 25
30402979 CACTTCTTAT
30402989 AAAATATTTATCATTTCAAA-AATTA
1 AAAATATTTATCATTT-AAATAATTA
30403014 AAAATTATTCTAT-ATTTAAATAATTA
1 AAAA-TATT-TATCATTTAAATAATTA
30403040 A
1 A
30403041 TTGGTGCAAT
Statistics
Matches: 24, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
25 7 0.29
26 14 0.58
27 3 0.12
ACGTcount: A:0.52, C:0.06, G:0.00, T:0.42
Consensus pattern (25 bp):
AAAATATTTATCATTTAAATAATTA
Found at i:30403296 original size:20 final size:19
Alignment explanation
Indices: 30403263--30403308 Score: 56
Period size: 20 Copynumber: 2.4 Consensus size: 19
30403253 TGGGTTCTGA
* *
30403263 AAAAATTATTAAAAGTTCT
1 AAAAATTATAAAAAATTCT
30403282 AAAAATATATAAAAAATTCT
1 AAAAAT-TATAAAAAATTCT
*
30403302 TAAAATT
1 AAAAATT
30403309 CATTATTTAT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
19 7 0.30
20 16 0.70
ACGTcount: A:0.59, C:0.04, G:0.02, T:0.35
Consensus pattern (19 bp):
AAAAATTATAAAAAATTCT
Found at i:30411001 original size:74 final size:74
Alignment explanation
Indices: 30410821--30411007 Score: 230
Period size: 74 Copynumber: 2.5 Consensus size: 74
30410811 CTAACGGAAG
* * * *
30410821 TTGCGCCTAGCACTAGTCGGATGAACCGACAAATAAATAGTGAGCCCAACTCTAGTTGTATATAC
1 TTGCGCCTAGCGCTAGTCGGATAAACCGACGAATAAATAGTGAGCCCAACTCTAGTTGGATATAC
30410886 CAAAGATAT
66 CAAAGATAT
** * * * *
30410895 TTGCGCCTAATGCTAGTCGAATAAGCCGACGAATAAATAGTGAGCCTAGCTCTAGTTGGATATAC
1 TTGCGCCTAGCGCTAGTCGGATAAACCGACGAATAAATAGTGAGCCCAACTCTAGTTGGATATAC
* *
30410960 TAACGATAT
66 CAAAGATAT
* * * *
30410969 TTGTGCCTAGCGCTAATCGGATAAACCAACGAAAAAATA
1 TTGCGCCTAGCGCTAGTCGGATAAACCGACGAATAAATA
30411008 ATTATTTATT
Statistics
Matches: 93, Mismatches: 20, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
74 93 1.00
ACGTcount: A:0.35, C:0.20, G:0.20, T:0.25
Consensus pattern (74 bp):
TTGCGCCTAGCGCTAGTCGGATAAACCGACGAATAAATAGTGAGCCCAACTCTAGTTGGATATAC
CAAAGATAT
Found at i:30412950 original size:18 final size:20
Alignment explanation
Indices: 30412909--30412952 Score: 56
Period size: 20 Copynumber: 2.3 Consensus size: 20
30412899 TATTCCAAGC
* *
30412909 TCAATATCAGTCAATATTTT
1 TCAATATCAATCAATATTTA
30412929 TCAATATCAATC-A-ATTTA
1 TCAATATCAATCAATATTTA
30412947 TCAATA
1 TCAATA
30412953 CCATTCAGTA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
18 10 0.45
19 1 0.05
20 11 0.50
ACGTcount: A:0.41, C:0.16, G:0.02, T:0.41
Consensus pattern (20 bp):
TCAATATCAATCAATATTTA
Found at i:30415878 original size:37 final size:37
Alignment explanation
Indices: 30415827--30415902 Score: 95
Period size: 37 Copynumber: 2.1 Consensus size: 37
30415817 ATGATCGATG
*
30415827 TTGTTGTGATTAGCCA-AATG-TATTGGCTTATAATGAT
1 TTGTTGTGATTAGCCATGA-GATA-TGGCTTATAATGAT
30415864 TTGTTGT-ATGTAGCCATGAGATATGGCTTATAATGAT
1 TTGTTGTGAT-TAGCCATGAGATATGGCTTATAATGAT
30415901 TT
1 TT
30415903 TGGCTTGTAA
Statistics
Matches: 35, Mismatches: 1, Indels: 6
0.83 0.02 0.14
Matches are distributed among these distances:
36 2 0.06
37 30 0.86
38 3 0.09
ACGTcount: A:0.26, C:0.08, G:0.22, T:0.43
Consensus pattern (37 bp):
TTGTTGTGATTAGCCATGAGATATGGCTTATAATGAT
Found at i:30416989 original size:13 final size:13
Alignment explanation
Indices: 30416971--30416995 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
30416961 AATTCCAATT
30416971 TAGTCCCTAAACC
1 TAGTCCCTAAACC
30416984 TAGTCCCTAAAC
1 TAGTCCCTAAAC
30416996 AAAGACTAAC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.36, G:0.08, T:0.24
Consensus pattern (13 bp):
TAGTCCCTAAACC
Found at i:30417414 original size:25 final size:25
Alignment explanation
Indices: 30417364--30417416 Score: 65
Period size: 25 Copynumber: 2.1 Consensus size: 25
30417354 AAAACCCCAA
*
30417364 TTTCTCCTTCTTTTTTCTTTCTTTC
1 TTTCTCCTTCTTTTTTCTTTCGTTC
30417389 TTTC-CCTTCTTTGTTTCGTTT-GTTC
1 TTTCTCCTTCTTT-TTTC-TTTCGTTC
30417414 TTT
1 TTT
30417417 TTTTTATTAA
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
24 8 0.32
25 14 0.56
26 3 0.12
ACGTcount: A:0.00, C:0.25, G:0.06, T:0.70
Consensus pattern (25 bp):
TTTCTCCTTCTTTTTTCTTTCGTTC
Found at i:30420039 original size:11 final size:11
Alignment explanation
Indices: 30420023--30420051 Score: 58
Period size: 11 Copynumber: 2.6 Consensus size: 11
30420013 AGGCATTTTT
30420023 GGCCCGAGCCC
1 GGCCCGAGCCC
30420034 GGCCCGAGCCC
1 GGCCCGAGCCC
30420045 GGCCCGA
1 GGCCCGA
30420052 ATTTACTAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.10, C:0.52, G:0.38, T:0.00
Consensus pattern (11 bp):
GGCCCGAGCCC
Found at i:30420221 original size:30 final size:30
Alignment explanation
Indices: 30420187--30420249 Score: 108
Period size: 30 Copynumber: 2.1 Consensus size: 30
30420177 ACTTATTTTA
30420187 TTGTTAATTTTGTTATTATTTTAAAGACAT
1 TTGTTAATTTTGTTATTATTTTAAAGACAT
* *
30420217 TTGTTAATTTTGTTATTATTTTAGAGGCAT
1 TTGTTAATTTTGTTATTATTTTAAAGACAT
30420247 TTG
1 TTG
30420250 CTTGTTAAGT
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.25, C:0.03, G:0.14, T:0.57
Consensus pattern (30 bp):
TTGTTAATTTTGTTATTATTTTAAAGACAT
Found at i:30439377 original size:20 final size:19
Alignment explanation
Indices: 30439340--30439378 Score: 51
Period size: 20 Copynumber: 2.0 Consensus size: 19
30439330 ATTTTTTAGA
* *
30439340 ATTTTTTATAAAATAAATT
1 ATTTTATATAAAACAAATT
30439359 ATTTTATATCAAAACAAATT
1 ATTTTATAT-AAAACAAATT
30439379 CACTTCCCAC
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
19 8 0.47
20 9 0.53
ACGTcount: A:0.49, C:0.05, G:0.00, T:0.46
Consensus pattern (19 bp):
ATTTTATATAAAACAAATT
Found at i:30439872 original size:12 final size:12
Alignment explanation
Indices: 30439855--30439881 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
30439845 TTAAAAGTAA
30439855 AAACAAATCTAG
1 AAACAAATCTAG
30439867 AAACAAATCTAG
1 AAACAAATCTAG
30439879 AAA
1 AAA
30439882 TTATAAATTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.63, C:0.15, G:0.07, T:0.15
Consensus pattern (12 bp):
AAACAAATCTAG
Found at i:30470939 original size:13 final size:13
Alignment explanation
Indices: 30470898--30470977 Score: 63
Period size: 13 Copynumber: 6.1 Consensus size: 13
30470888 AAATGGTAAA
*
30470898 ATGAAATGTTTAG
1 ATGAAATGTTTAT
*
30470911 ATGAAATGGTTAT
1 ATGAAATGTTTAT
*
30470924 ATGAAATGTTTTT
1 ATGAAATGTTTAT
*
30470937 ATGAATATAG-ATAT
1 ATGAA-AT-GTTTAT
* **
30470951 ATGAAACGAATAT
1 ATGAAATGTTTAT
*
30470964 ATGAAGTGTTTAT
1 ATGAAATGTTTAT
30470977 A
1 A
30470978 CAAAATACTA
Statistics
Matches: 53, Mismatches: 11, Indels: 6
0.76 0.16 0.09
Matches are distributed among these distances:
12 1 0.02
13 42 0.79
14 9 0.17
15 1 0.02
ACGTcount: A:0.41, C:0.01, G:0.19, T:0.39
Consensus pattern (13 bp):
ATGAAATGTTTAT
Found at i:30480083 original size:40 final size:40
Alignment explanation
Indices: 30479122--30480071 Score: 1769
Period size: 40 Copynumber: 23.8 Consensus size: 40
30479112 GATGATAATG
* *
30479122 GGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAATTCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCC
*
30479162 GGGCTAAGTCCCGAAGGCATTTGTTCGAGTTACTAATTCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCC
30479202 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCC
30479242 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCC
30479282 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCC
30479322 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCC
30479362 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCC
30479402 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCC
30479442 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCC
30479482 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCC
30479522 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCC
30479562 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCC
30479602 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCC
30479642 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCC
30479682 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCC
30479722 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCC
30479762 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCC
30479802 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCC
* *
30479842 GGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAATTCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCC
30479882 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCC
* *
30479922 GGGCTAAGTACCGAAGGCATTTGTGCGAGTTACTAATTCT
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCC
30479962 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT-ATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT-TCC
* **
30480002 GGGCTAAGTCCCGAAGGCATTTGTGCAAACTACT-ATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT-TCC
*
30480042 GGGCTAAGTCCCGAAGGCATTTGAGCGAGT
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGT
30480072 AGCTATATCC
Statistics
Matches: 890, Mismatches: 19, Indels: 2
0.98 0.02 0.00
Matches are distributed among these distances:
39 2 0.00
40 888 1.00
ACGTcount: A:0.23, C:0.22, G:0.27, T:0.27
Consensus pattern (40 bp):
GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCC
Found at i:30486159 original size:47 final size:47
Alignment explanation
Indices: 30486090--30486184 Score: 190
Period size: 47 Copynumber: 2.0 Consensus size: 47
30486080 GCTTATTATA
30486090 TGTATATAGGCATGTGTGAAAATTTCATGTTTGAATTTTGTTAATTG
1 TGTATATAGGCATGTGTGAAAATTTCATGTTTGAATTTTGTTAATTG
30486137 TGTATATAGGCATGTGTGAAAATTTCATGTTTGAATTTTGTTAATTG
1 TGTATATAGGCATGTGTGAAAATTTCATGTTTGAATTTTGTTAATTG
30486184 T
1 T
30486185 AAGTGAATTT
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
47 48 1.00
ACGTcount: A:0.27, C:0.04, G:0.21, T:0.47
Consensus pattern (47 bp):
TGTATATAGGCATGTGTGAAAATTTCATGTTTGAATTTTGTTAATTG
Found at i:30487230 original size:26 final size:26
Alignment explanation
Indices: 30487199--30487277 Score: 82
Period size: 26 Copynumber: 3.3 Consensus size: 26
30487189 CATGATTTCA
30487199 TATATATGTGACTCTAATGTCTAATG
1 TATATATGTGACTCTAATGTCTAATG
* * *
30487225 TATATATGT--C-ATGAT-T-TCA--
1 TATATATGTGACTCTAATGTCTAATG
30487244 TATATATGTGACTCTAATGTCTAATG
1 TATATATGTGACTCTAATGTCTAATG
30487270 TATATATG
1 TATATATG
30487278 GGTTAAGTAC
Statistics
Matches: 40, Mismatches: 6, Indels: 14
0.67 0.10 0.23
Matches are distributed among these distances:
19 9 0.22
21 3 0.08
22 4 0.10
23 4 0.10
24 3 0.08
26 17 0.43
ACGTcount: A:0.32, C:0.10, G:0.14, T:0.44
Consensus pattern (26 bp):
TATATATGTGACTCTAATGTCTAATG
Found at i:30487240 original size:45 final size:45
Alignment explanation
Indices: 30487189--30487277 Score: 178
Period size: 45 Copynumber: 2.0 Consensus size: 45
30487179 TGAGTTGATG
30487189 CATGATTTCATATATATGTGACTCTAATGTCTAATGTATATATGT
1 CATGATTTCATATATATGTGACTCTAATGTCTAATGTATATATGT
30487234 CATGATTTCATATATATGTGACTCTAATGTCTAATGTATATATG
1 CATGATTTCATATATATGTGACTCTAATGTCTAATGTATATATG
30487278 GGTTAAGTAC
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
45 44 1.00
ACGTcount: A:0.31, C:0.11, G:0.13, T:0.44
Consensus pattern (45 bp):
CATGATTTCATATATATGTGACTCTAATGTCTAATGTATATATGT
Found at i:30488017 original size:40 final size:40
Alignment explanation
Indices: 30487741--30488036 Score: 431
Period size: 40 Copynumber: 7.4 Consensus size: 40
30487731 GATGATAACG
* **
30487741 GGGCTAAGTCCCGAAGGCATTTGTGCAAACTACTATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC
*
30487781 GGGCTAAGTCCCGAAGGCATTTGTTCGAGTTACTA-ATTCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-TCC
30487821 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-ATTCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-TCC
30487861 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-ATTCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-TCC
30487901 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC
* **
30487941 GAGCTAAGTCCCGAAGGCATTTGTGCGAACTACTATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC
*
30487981 GGGCTAAGTCCCGAAGGCATTTGAGCGAG-TAGCTATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATATCC
* *
30488021 -GGTTAAATCCCGAAGG
1 GGGCTAAGTCCCGAAGG
30488037 TACTTGGTTT
Statistics
Matches: 240, Mismatches: 13, Indels: 7
0.92 0.05 0.03
Matches are distributed among these distances:
39 17 0.07
40 222 0.93
41 1 0.00
ACGTcount: A:0.25, C:0.23, G:0.26, T:0.26
Consensus pattern (40 bp):
GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC
Found at i:30491402 original size:47 final size:46
Alignment explanation
Indices: 30491252--30491421 Score: 159
Period size: 46 Copynumber: 3.7 Consensus size: 46
30491242 CATCTTGTAA
* * ** ** *
30491252 CCGATGCATGTCCCAAACATGTCTTACACTGGCTTATGTCTCGA-GG
1 CCGATGCATGTCCCAGACATGTCTTACACTAGC-CCTCACTCAATGG
*
30491298 CCGATGCATGTCCCAGACATGTCTTACACTAGCCCTCATCTCAAT-A
1 CCGATGCATGTCCCAGACATGTCTTACACTAGCCCTCA-CTCAATGG
* *
30491344 CCGATGTCATGTCCCAGACATGGTCTTACACTATCTCTCA-T-AATGTGG
1 CCGATG-CATGTCCCAGACAT-GTCTTACACTAGCCCTCACTCAA--TGG
*
30491392 CCGATGCATGTCCCCGACATGTCTTACACT
1 CCGATGCATGTCCCAGACATGTCTTACACT
30491422 TGCTCAAACA
Statistics
Matches: 105, Mismatches: 12, Indels: 14
0.80 0.09 0.11
Matches are distributed among these distances:
45 3 0.03
46 52 0.50
47 28 0.27
48 22 0.21
ACGTcount: A:0.23, C:0.31, G:0.18, T:0.28
Consensus pattern (46 bp):
CCGATGCATGTCCCAGACATGTCTTACACTAGCCCTCACTCAATGG
Found at i:30495317 original size:8 final size:8
Alignment explanation
Indices: 30495304--30495328 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
30495294 ACATCATTAG
30495304 TAAGAGGC
1 TAAGAGGC
30495312 TAAGAGGC
1 TAAGAGGC
30495320 TAAGAGGC
1 TAAGAGGC
30495328 T
1 T
30495329 GGGTCCTCCT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.36, C:0.12, G:0.36, T:0.16
Consensus pattern (8 bp):
TAAGAGGC
Found at i:30496860 original size:29 final size:29
Alignment explanation
Indices: 30496818--30496875 Score: 107
Period size: 29 Copynumber: 2.0 Consensus size: 29
30496808 TGATAAATAG
*
30496818 TGAGGGGTTTATATAGATATTGGGGCACA
1 TGAGGGGTTTATATAGATATTAGGGCACA
30496847 TGAGGGGTTTATATAGATATTAGGGCACA
1 TGAGGGGTTTATATAGATATTAGGGCACA
30496876 CGATCGTGGG
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.29, C:0.07, G:0.33, T:0.31
Consensus pattern (29 bp):
TGAGGGGTTTATATAGATATTAGGGCACA
Found at i:30499659 original size:40 final size:40
Alignment explanation
Indices: 30499599--30499833 Score: 187
Period size: 39 Copynumber: 6.0 Consensus size: 40
30499589 ATTTGATGTG
*
30499599 TATCTGGGCTTAAAGACCCGCAGGCTATATGCTGGAATTA
1 TATCCGGGCTTAAAGACCCGCAGGCTATATGCTGGAATTA
30499639 TATCCGGGCTTAAAGACCCGCAGGCTATATGCTGGAATTA
1 TATCCGGGCTTAAAGACCCGCAGGCTATATGCTGGAATTA
* * ** * *
30499679 TACCCGGACTT-AAGGTCCGCAGGCTATGTGCTGAAATTA
1 TATCCGGGCTTAAAGACCCGCAGGCTATATGCTGGAATTA
* * ** ** *
30499718 TAACCGGACTT-AAGGTCCGCAGGCTACGTGCTGGAAATA
1 TATCCGGGCTTAAAGACCCGCAGGCTATATGCTGGAATTA
* * * * *
30499757 TGTCTGGGC-AAAAGTCCCGCAGGCT-TCGA-GCTGGTATTA
1 TATCCGGGCTTAAAGACCCGCAGGCTAT--ATGCTGGAATTA
* ** *
30499796 TA-CCGGGTTTAAATTCCCGCAGGCT-TGTGCTGGTAATT
1 TATCCGGGCTTAAAGACCCGCAGGCTATATGCTGG-AATT
30499834 GGTTTCAAGT
Statistics
Matches: 160, Mismatches: 29, Indels: 13
0.79 0.14 0.06
Matches are distributed among these distances:
38 9 0.06
39 103 0.64
40 48 0.30
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
TATCCGGGCTTAAAGACCCGCAGGCTATATGCTGGAATTA
Found at i:30506823 original size:45 final size:46
Alignment explanation
Indices: 30506758--30506850 Score: 161
Period size: 45 Copynumber: 2.0 Consensus size: 46
30506748 AAAAAGAGTT
30506758 CTCATGTTGTTCAACTTGGCCGAATAGAAGAAAGAAAAAGAAGGGAAA
1 CTCATGTTGTT--ACTTGGCCGAATAGAAGAAAGAAAAAGAAGGGAAA
30506806 CTCATGTTGTT-CTTGGCCGAATAGAAGAAAGAAAAAGAAGGGAAA
1 CTCATGTTGTTACTTGGCCGAATAGAAGAAAGAAAAAGAAGGGAAA
30506851 GAGCTTGGAG
Statistics
Matches: 45, Mismatches: 0, Indels: 3
0.94 0.00 0.06
Matches are distributed among these distances:
45 34 0.76
48 11 0.24
ACGTcount: A:0.43, C:0.12, G:0.26, T:0.19
Consensus pattern (46 bp):
CTCATGTTGTTACTTGGCCGAATAGAAGAAAGAAAAAGAAGGGAAA
Found at i:30508824 original size:47 final size:47
Alignment explanation
Indices: 30508765--30509252 Score: 778
Period size: 47 Copynumber: 10.4 Consensus size: 47
30508755 GATGTACAAG
*
30508765 GTGTATATATGTGATAAGGCCAAATGGCCAATGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
* *
30508812 GTGTGTATATGTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
* *
30508859 GTGTATATATGTGATAAGGCCTAATGGCCAATGTGATTAATGTGAAA
1 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
* *
30508906 GTGTGTATATGTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
*
30508953 GTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
*
30509000 GTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
* *
30509047 GTGTATATATGTGATAAGGCCGAGTGGCCAACGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
* *
30509094 GTGTATATATGTGATCAGGCCGAATGGCCAACGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
* * * * * *
30509141 GTGTATATATGAGATAAGACCTAATGGCCGATGTGATGGATGTGAAG
1 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
* *
30509188 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGGATATGAAA
1 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
*
30509235 GTGTATAAATGTGATAAG
1 GTGTATATATGTGATAAG
30509253 TCCCGAAGGG
Statistics
Matches: 407, Mismatches: 34, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
47 407 1.00
ACGTcount: A:0.33, C:0.09, G:0.30, T:0.28
Consensus pattern (47 bp):
GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
Found at i:30527695 original size:27 final size:27
Alignment explanation
Indices: 30527664--30527841 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
30527654 TAAATTGTAC
30527664 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
30527691 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
30527717 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
30527745 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
30527773 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
30527800 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
30527827 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
30527842 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:30527778 original size:82 final size:81
Alignment explanation
Indices: 30527665--30527820 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
30527655 AAATTGTACA
* *
30527665 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
30527729 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
30527746 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
30527811 TGCGAGTTGA
65 TGCGAATTGA
30527821 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:30527832 original size:82 final size:81
Alignment explanation
Indices: 30527661--30527841 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
30527651 GATTAAATTG
* *
30527661 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
30527726 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
30527742 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
30527806 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
30527824 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
30527842 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:30531948 original size:16 final size:17
Alignment explanation
Indices: 30531927--30531965 Score: 53
Period size: 17 Copynumber: 2.4 Consensus size: 17
30531917 TGTGTCACTA
30531927 TCAAAAAG-TATTTACT
1 TCAAAAAGTTATTTACT
* *
30531943 TCAAAAGGTTATTTATT
1 TCAAAAAGTTATTTACT
30531960 TCAAAA
1 TCAAAA
30531966 TCTCGTTTAT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
16 7 0.35
17 13 0.65
ACGTcount: A:0.44, C:0.10, G:0.08, T:0.38
Consensus pattern (17 bp):
TCAAAAAGTTATTTACT
Found at i:30532425 original size:18 final size:18
Alignment explanation
Indices: 30532402--30532455 Score: 72
Period size: 18 Copynumber: 3.0 Consensus size: 18
30532392 TGGCCCATTG
30532402 CAGTAACAGTAAACAGTA
1 CAGTAACAGTAAACAGTA
* *
30532420 CAGTAACAGTAATCAGTG
1 CAGTAACAGTAAACAGTA
* *
30532438 GAATAACAGTAAACAGTA
1 CAGTAACAGTAAACAGTA
30532456 TGCAAATCCT
Statistics
Matches: 30, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
18 30 1.00
ACGTcount: A:0.48, C:0.15, G:0.19, T:0.19
Consensus pattern (18 bp):
CAGTAACAGTAAACAGTA
Found at i:30532811 original size:27 final size:27
Alignment explanation
Indices: 30532781--30532896 Score: 119
Period size: 27 Copynumber: 4.3 Consensus size: 27
30532771 ACATACATCA
30532781 CATAAGGGCAAAA-CAGTCATTTTACCT
1 CATAAGGGCAAAACCA-TCATTTTACCT
*
30532808 CATAAGGGTAAAACCATCATTTTACCT
1 CATAAGGGCAAAACCATCATTTTACCT
* * * * * * *
30532835 TAGAAGGGCAAAATCATTATTTCATCA
1 CATAAGGGCAAAACCATCATTTTACCT
*
30532862 CATAAGGGCAAAA-CAGTCATTTTATCT
1 CATAAGGGCAAAACCA-TCATTTTACCT
30532889 CATAAGGG
1 CATAAGGG
30532897 TTCAGGTACG
Statistics
Matches: 73, Mismatches: 14, Indels: 4
0.80 0.15 0.04
Matches are distributed among these distances:
26 2 0.03
27 69 0.95
28 2 0.03
ACGTcount: A:0.38, C:0.19, G:0.16, T:0.28
Consensus pattern (27 bp):
CATAAGGGCAAAACCATCATTTTACCT
Found at i:30536022 original size:25 final size:25
Alignment explanation
Indices: 30535994--30536063 Score: 113
Period size: 25 Copynumber: 2.8 Consensus size: 25
30535984 CTCTTTTAAT
*
30535994 AACTGGGGCAAAGCCCTTTTTGATA
1 AACTGGGGCAAAGCCCTTTTCGATA
*
30536019 AACTGGGGCAAAGCCCTTTTCGGTA
1 AACTGGGGCAAAGCCCTTTTCGATA
*
30536044 AACTGGGGCATAGCCCTTTT
1 AACTGGGGCAAAGCCCTTTT
30536064 AGCACTTCCT
Statistics
Matches: 42, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
25 42 1.00
ACGTcount: A:0.24, C:0.23, G:0.26, T:0.27
Consensus pattern (25 bp):
AACTGGGGCAAAGCCCTTTTCGATA
Found at i:30537019 original size:27 final size:27
Alignment explanation
Indices: 30536966--30537218 Score: 172
Period size: 27 Copynumber: 9.3 Consensus size: 27
30536956 TTTCATCCTA
* * * **
30536966 CAAGGGTGTTTTGGTAAATCTACAAAC
1 CAAGGGTATTTTGGTAATTTTGTAAAC
**
30536993 CAAGGGTATTTCAGTAATTTTGTAAAC
1 CAAGGGTATTTTGGTAATTTTGTAAAC
* * *
30537020 CAATGGTATTTCT-ATAATTTT-TAGAAAGT
1 CAAGGGTATTT-TGGTAATTTTGT--AAA-C
* *
30537049 CAAGGGTATTTTTGTAATTTTGTAAAT
1 CAAGGGTATTTTGGTAATTTTGTAAAC
* * ** *
30537076 CAGGGGTAGTTTGGTAATTTTACAAAT
1 CAAGGGTATTTTGGTAATTTTGTAAAC
** * ***
30537103 TGAGGGTATTTCGGTAATTTCACAAAC
1 CAAGGGTATTTTGGTAATTTTGTAAAC
30537130 C-AGTGGTATTTTGGTAATTTTAG-AAAC
1 CAAG-GGTATTTTGGTAATTTT-GTAAAC
* *
30537157 TAGGGGTATTTTGGTAATTTTGTAAAC
1 CAAGGGTATTTTGGTAATTTTGTAAAC
* * *
30537184 TAAGGGTATTTTAGTAATTTTGTAAAT
1 CAAGGGTATTTTGGTAATTTTGTAAAC
30537211 CAAGGGTA
1 CAAGGGTA
30537219 AAACGGTAAT
Statistics
Matches: 181, Mismatches: 35, Indels: 20
0.77 0.15 0.08
Matches are distributed among these distances:
26 4 0.02
27 151 0.83
28 8 0.04
29 17 0.09
30 1 0.01
ACGTcount: A:0.31, C:0.08, G:0.21, T:0.40
Consensus pattern (27 bp):
CAAGGGTATTTTGGTAATTTTGTAAAC
Found at i:30537190 original size:81 final size:81
Alignment explanation
Indices: 30537053--30537203 Score: 198
Period size: 81 Copynumber: 1.9 Consensus size: 81
30537043 GAAAGTCAAG
* * * *
30537053 GGTATTTTTGTAATTTTGTAAATCAGGGGTAGTTTGGTAATTTTACAAATTGAGGGTATTTCGGT
1 GGTATTTTGGTAATTTTGTAAATCAGGGGTAGTTTGGTAATTTTACAAACTAAGGGTATTTCAGT
30537118 AATTTCACAAACCAGT
66 AATTTCACAAACCAGT
* ** *
30537134 GGTATTTTGGTAATTTTAG-AAA-CTAGGGGTATTTTGGTAATTTTGTAAACTAAGGGTATTTTA
1 GGTATTTTGGTAATTTT-GTAAATC-AGGGGTAGTTTGGTAATTTTACAAACTAAGGGTATTTCA
30537197 GTAATTT
64 GTAATTT
30537204 TGTAAATCAA
Statistics
Matches: 60, Mismatches: 8, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
80 1 0.02
81 58 0.97
82 1 0.02
ACGTcount: A:0.28, C:0.06, G:0.23, T:0.43
Consensus pattern (81 bp):
GGTATTTTGGTAATTTTGTAAATCAGGGGTAGTTTGGTAATTTTACAAACTAAGGGTATTTCAGT
AATTTCACAAACCAGT
Found at i:30537192 original size:54 final size:54
Alignment explanation
Indices: 30536967--30537204 Score: 194
Period size: 54 Copynumber: 4.4 Consensus size: 54
30536957 TTCATCCTAC
* * * * * *
30536967 AAGGGTGTTTTGGTAAATCTACAAACCAAGGGTATTTCAGTAATTTTGTAAACC
1 AAGGGTATTTTGGTAATTTTACAAACTAAGGGTATTTCGGTAATTTTGTAAACT
* * * * **
30537021 AATGGTATTTCT-ATAATTTTTAGAAAGTCAAGGGTATTTTTGTAATTTTGTAAA-T
1 AAGGGTATTT-TGGTAA-TTTTACAAACT-AAGGGTATTTCGGTAATTTTGTAAACT
* * * * ***
30537076 CAGGGGTAGTTTGGTAATTTTACAAATTGAGGGTATTTCGGTAATTTCACAAAC-
1 -AAGGGTATTTTGGTAATTTTACAAACTAAGGGTATTTCGGTAATTTTGTAAACT
* * * *
30537130 CAGTGGTATTTTGGTAATTTTAGAAACTAGGGGTATTTTGGTAATTTTGTAAACT
1 AAG-GGTATTTTGGTAATTTTACAAACTAAGGGTATTTCGGTAATTTTGTAAACT
*
30537185 AAGGGTATTTTAGTAATTTT
1 AAGGGTATTTTGGTAATTTT
30537205 GTAAATCAAG
Statistics
Matches: 140, Mismatches: 36, Indels: 16
0.73 0.19 0.08
Matches are distributed among these distances:
53 1 0.01
54 87 0.62
55 19 0.14
56 33 0.24
ACGTcount: A:0.31, C:0.08, G:0.21, T:0.41
Consensus pattern (54 bp):
AAGGGTATTTTGGTAATTTTACAAACTAAGGGTATTTCGGTAATTTTGTAAACT
Found at i:30537227 original size:27 final size:27
Alignment explanation
Indices: 30537197--30537351 Score: 166
Period size: 27 Copynumber: 5.7 Consensus size: 27
30537187 GGGTATTTTA
* *
30537197 GTAATTTTGTAAATCAAGGGTAAAACG
1 GTAATTCTATAAATCAAGGGTAAAACG
* *
30537224 GTAATTCTATAAATCGAGGGTAAAATG
1 GTAATTCTATAAATCAAGGGTAAAACG
* * * *
30537251 GTAATTTTGTAAATTAAGGGTAAAACT
1 GTAATTCTATAAATCAAGGGTAAAACG
* * * * *
30537278 GTAATTTTGTAAATCGAGGGTGAAACA
1 GTAATTCTATAAATCAAGGGTAAAACG
* *
30537305 GTAATTCTATAAATCTAGGGTAAAATG
1 GTAATTCTATAAATCAAGGGTAAAACG
*
30537332 GTAATTCTACAAATCAAGGG
1 GTAATTCTATAAATCAAGGG
30537352 CATTTCAGTA
Statistics
Matches: 106, Mismatches: 22, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 106 1.00
ACGTcount: A:0.40, C:0.08, G:0.21, T:0.31
Consensus pattern (27 bp):
GTAATTCTATAAATCAAGGGTAAAACG
Found at i:30537227 original size:54 final size:54
Alignment explanation
Indices: 30537169--30537351 Score: 179
Period size: 54 Copynumber: 3.4 Consensus size: 54
30537159 GGGGTATTTT
***
30537169 GGTAATTTTGTAAA-CTAAGGGTATTTTAGTAATTTTGTAAATCAAGGGTAAAAC
1 GGTAATTTTGTAAATC-AAGGGTAAAATAGTAATTTTGTAAATCAAGGGTAAAAC
* * * * *
30537223 GGTAATTCTATAAATCGAGGGTAAAATGGTAATTTTGTAAATTAAGGGTAAAAC
1 GGTAATTTTGTAAATCAAGGGTAAAATAGTAATTTTGTAAATCAAGGGTAAAAC
* * * * * * * *
30537277 TGTAATTTTGTAAATCGAGGGTGAAACAGTAATTCTATAAATCTAGGGTAAAAT
1 GGTAATTTTGTAAATCAAGGGTAAAATAGTAATTTTGTAAATCAAGGGTAAAAC
* **
30537331 GGTAATTCTACAAATCAAGGG
1 GGTAATTTTGTAAATCAAGGG
30537352 CATTTCAGTA
Statistics
Matches: 104, Mismatches: 24, Indels: 2
0.80 0.18 0.02
Matches are distributed among these distances:
54 103 0.99
55 1 0.01
ACGTcount: A:0.39, C:0.07, G:0.21, T:0.33
Consensus pattern (54 bp):
GGTAATTTTGTAAATCAAGGGTAAAATAGTAATTTTGTAAATCAAGGGTAAAAC
Found at i:30537227 original size:81 final size:81
Alignment explanation
Indices: 30537142--30537337 Score: 227
Period size: 81 Copynumber: 2.4 Consensus size: 81
30537132 GTGGTATTTT
* * *** ***
30537142 GGTAATTTTAGAAACTAGGGGTATTTTGGTAATTTTGTAAACTAAGGGT-ATTTTAGTAATTTTG
1 GGTAATTCTATAAACTAGGGGTAAAATGGTAATTTTGTAAACTAAGGGTAAAACT-GTAATTTTG
30537206 TAAATCAAGGGTAAAAC
65 TAAATCAAGGGTAAAAC
* *
30537223 GGTAATTCTATAAA-TCGAGGGTAAAATGGTAATTTTGTAAATTAAGGGTAAAACTGTAATTTTG
1 GGTAATTCTATAAACTAG-GGGTAAAATGGTAATTTTGTAAACTAAGGGTAAAACTGTAATTTTG
* *
30537287 TAAATCGAGGGTGAAAC
65 TAAATCAAGGGTAAAAC
*
30537304 AGTAATTCTATAAATCTA-GGGTAAAATGGTAATT
1 GGTAATTCTATAAA-CTAGGGGTAAAATGGTAATT
30537338 CTACAAATCA
Statistics
Matches: 97, Mismatches: 14, Indels: 8
0.82 0.12 0.07
Matches are distributed among these distances:
80 2 0.02
81 92 0.95
82 2 0.02
83 1 0.01
ACGTcount: A:0.37, C:0.06, G:0.22, T:0.35
Consensus pattern (81 bp):
GGTAATTCTATAAACTAGGGGTAAAATGGTAATTTTGTAAACTAAGGGTAAAACTGTAATTTTGT
AAATCAAGGGTAAAAC
Found at i:30537351 original size:81 final size:81
Alignment explanation
Indices: 30537197--30537351 Score: 238
Period size: 81 Copynumber: 1.9 Consensus size: 81
30537187 GGGTATTTTA
* * **
30537197 GTAATTTTGTAAATCAAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAATGGTAATTTTGTA
1 GTAATTTTGTAAATCAAGGGTAAAACAGTAATTCTATAAATCGAGGGTAAAATGGTAATTCTACA
*
30537262 AATTAAGGGTAAAACT
66 AATCAAGGGTAAAACT
* * *
30537278 GTAATTTTGTAAATCGAGGGTGAAACAGTAATTCTATAAATCTAGGGTAAAATGGTAATTCTACA
1 GTAATTTTGTAAATCAAGGGTAAAACAGTAATTCTATAAATCGAGGGTAAAATGGTAATTCTACA
30537343 AATCAAGGG
66 AATCAAGGG
30537352 CATTTCAGTA
Statistics
Matches: 66, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
81 66 1.00
ACGTcount: A:0.40, C:0.08, G:0.21, T:0.31
Consensus pattern (81 bp):
GTAATTTTGTAAATCAAGGGTAAAACAGTAATTCTATAAATCGAGGGTAAAATGGTAATTCTACA
AATCAAGGGTAAAACT
Found at i:30537363 original size:81 final size:81
Alignment explanation
Indices: 30537185--30537365 Score: 236
Period size: 81 Copynumber: 2.2 Consensus size: 81
30537175 TTTGTAAACT
* *
30537185 AAGGGTATTTTAGTAATTTTGTAAATCAAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAAT
1 AAGGGTATTTCAGTAATTTTGTAAATCAAGGGTAAAACAGTAATTCTATAAATCGAGGGTAAAAT
* ** *
30537250 GGTAATTTTGTAAATT
66 GGTAATTCTACAAATC
*** * * * *
30537266 AAGGGTAAAACTGTAATTTTGTAAATCGAGGGTGAAACAGTAATTCTATAAATCTAGGGTAAAAT
1 AAGGGTATTTCAGTAATTTTGTAAATCAAGGGTAAAACAGTAATTCTATAAATCGAGGGTAAAAT
30537331 GGTAATTCTACAAATC
66 GGTAATTCTACAAATC
*
30537347 AAGGGCATTTCAGTAATTT
1 AAGGGTATTTCAGTAATTT
30537366 GGTGAACTAA
Statistics
Matches: 82, Mismatches: 18, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
81 82 1.00
ACGTcount: A:0.39, C:0.08, G:0.20, T:0.33
Consensus pattern (81 bp):
AAGGGTATTTCAGTAATTTTGTAAATCAAGGGTAAAACAGTAATTCTATAAATCGAGGGTAAAAT
GGTAATTCTACAAATC
Found at i:30538593 original size:24 final size:24
Alignment explanation
Indices: 30538562--30538631 Score: 99
Period size: 23 Copynumber: 3.0 Consensus size: 24
30538552 ATCCTCCTTT
30538562 TTCTTCTCAAGAACTTACCTTTTA
1 TTCTTCTCAAGAACTTACCTTTTA
* *
30538586 TTCTTCTCAAGCAAC-CA-TTTTTA
1 TTCTTCTCAAG-AACTTACCTTTTA
30538609 TTCTTCTCAAGAACTTACCTTTT
1 TTCTTCTCAAGAACTTACCTTTT
30538632 TCACTTAAAA
Statistics
Matches: 39, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
22 3 0.08
23 17 0.44
24 16 0.41
25 3 0.08
ACGTcount: A:0.24, C:0.26, G:0.04, T:0.46
Consensus pattern (24 bp):
TTCTTCTCAAGAACTTACCTTTTA
Found at i:30544974 original size:42 final size:42
Alignment explanation
Indices: 30544922--30545173 Score: 368
Period size: 42 Copynumber: 6.1 Consensus size: 42
30544912 CTAAGTCCGG
* * * * *
30544922 ATATAGTACCAACACTAAGCCTACGGGATTTTACCCAGATAT
1 ATATATTACCAGCACGAAGCCTGCGGGATTTAACCCAGATAT
*
30544964 ATATATTACCAGCACGAAGCCTGCGGGATTTAACCCGGATAT
1 ATATATTACCAGCACGAAGCCTGCGGGATTTAACCCAGATAT
*
30545006 ATATATTACCAGCATGAAGCCTGCGGGATTTAACCCAG--AT
1 ATATATTACCAGCACGAAGCCTGCGGGATTTAACCCAGATAT
*
30545046 ATATATTACCAGCACGAAGCCTGCGGGATTTAACCCGGATAT
1 ATATATTACCAGCACGAAGCCTGCGGGATTTAACCCAGATAT
*
30545088 ATATATTACCAGCATGAAGCCTGCGGGATTTAACCCAG--AT
1 ATATATTACCAGCACGAAGCCTGCGGGATTTAACCCAGATAT
** *
30545128 ATATATTACCAGCACGAAGCCTGCAAGATTTAACCCGGATAT
1 ATATATTACCAGCACGAAGCCTGCGGGATTTAACCCAGATAT
30545170 ATAT
1 ATAT
30545174 TATATCGAGA
Statistics
Matches: 190, Mismatches: 16, Indels: 8
0.89 0.07 0.04
Matches are distributed among these distances:
40 74 0.39
42 116 0.61
ACGTcount: A:0.33, C:0.23, G:0.19, T:0.25
Consensus pattern (42 bp):
ATATATTACCAGCACGAAGCCTGCGGGATTTAACCCAGATAT
Found at i:30545061 original size:82 final size:82
Alignment explanation
Indices: 30544938--30545173 Score: 418
Period size: 82 Copynumber: 2.9 Consensus size: 82
30544928 TACCAACACT
* *
30544938 AAGCCTACGGGATTTTACCCAGATATATATATTACCAGCACGAAGCCTGCGGGATTTAACCCGGA
1 AAGCCTGCGGGATTTAACCCAG--ATATATATTACCAGCACGAAGCCTGCGGGATTTAACCCGGA
30545003 TATATATATTACCAGCATG
64 TATATATATTACCAGCATG
30545022 AAGCCTGCGGGATTTAACCCAGATATATATTACCAGCACGAAGCCTGCGGGATTTAACCCGGATA
1 AAGCCTGCGGGATTTAACCCAGATATATATTACCAGCACGAAGCCTGCGGGATTTAACCCGGATA
30545087 TATATATTACCAGCATG
66 TATATATTACCAGCATG
**
30545104 AAGCCTGCGGGATTTAACCCAGATATATATTACCAGCACGAAGCCTGCAAGATTTAACCCGGATA
1 AAGCCTGCGGGATTTAACCCAGATATATATTACCAGCACGAAGCCTGCGGGATTTAACCCGGATA
30545169 TATAT
66 TATAT
30545174 TATATCGAGA
Statistics
Matches: 148, Mismatches: 4, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
82 128 0.86
84 20 0.14
ACGTcount: A:0.33, C:0.23, G:0.19, T:0.25
Consensus pattern (82 bp):
AAGCCTGCGGGATTTAACCCAGATATATATTACCAGCACGAAGCCTGCGGGATTTAACCCGGATA
TATATATTACCAGCATG
Found at i:30552802 original size:42 final size:42
Alignment explanation
Indices: 30552740--30552827 Score: 158
Period size: 42 Copynumber: 2.1 Consensus size: 42
30552730 CTAAGTCCGG
*
30552740 ATATAGTACCAGCACTAAGCCTGCGGGATTTAACCCGGATAT
1 ATATAGTACCAGCACGAAGCCTGCGGGATTTAACCCGGATAT
*
30552782 ATATATTACCAGCACGAAGCCTGCGGGATTTAACCCGGATAT
1 ATATAGTACCAGCACGAAGCCTGCGGGATTTAACCCGGATAT
30552824 ATAT
1 ATAT
30552828 TATATCGAGA
Statistics
Matches: 44, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
42 44 1.00
ACGTcount: A:0.32, C:0.23, G:0.20, T:0.25
Consensus pattern (42 bp):
ATATAGTACCAGCACGAAGCCTGCGGGATTTAACCCGGATAT
Found at i:30556365 original size:27 final size:27
Alignment explanation
Indices: 30556335--30556512 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
30556325 ATATTGAGTC
* * * *
30556335 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
30556362 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
30556389 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
30556417 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
30556444 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
30556471 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
30556498 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
30556513 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:30556474 original size:82 final size:81
Alignment explanation
Indices: 30556356--30556511 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
30556346 TGCTATATAA
* *
30556356 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
30556421 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
30556438 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
30556502 CACTTAGTGC
65 CACTTAGTGC
30556512 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:30565649 original size:27 final size:27
Alignment explanation
Indices: 30565632--30566111 Score: 474
Period size: 27 Copynumber: 17.6 Consensus size: 27
30565622 ATATTAAGTC
30565632 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTCAGTGCTATATAATCAACT
* *
30565659 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTCAGTGCTATATAATC-AACT
* * *
30565687 CGCACACTTAGTGCTACATAGTCAACT
1 CGCACACTCAGTGCTATATAATCAACT
* * *
30565714 CGCACACTTAGTGCTACATAGTCAACT
1 CGCACACTCAGTGCTATATAATCAACT
* * *
30565741 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTCAGTGCTATATAATC-AACT
* * *
30565769 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTCAGTGCTATATAATC-AACT
* * *
30565797 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTCAGTGCTATATAATC-AACT
* * *
30565825 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTCAGTGCTATATAATC-AACT
* * *
30565853 CGCACACTTAGTGCTACATAGTCAACT
1 CGCACACTCAGTGCTATATAATCAACT
* * *
30565880 CGCACACTTAGTGCTACATAGTCAACT
1 CGCACACTCAGTGCTATATAATCAACT
* *
30565907 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTCAGTGCTATATAATC-AACT
* * *
30565935 CGCACACTTAGTGCTACATAGTCAACT
1 CGCACACTCAGTGCTATATAATCAACT
* * *
30565962 CGCACACTTAGTGCTACATAGTCAACT
1 CGCACACTCAGTGCTATATAATCAACT
* * *
30565989 CGCACACTTAGTGCTACATAGTCAACT
1 CGCACACTCAGTGCTATATAATCAACT
* * *
30566016 CGCACACTTAGTGCTACATAGTCAACT
1 CGCACACTCAGTGCTATATAATCAACT
* * *
30566043 CGCACACTTAGTGCTACATAGTCAACT
1 CGCACACTCAGTGCTATATAATCAACT
* * * *
30566070 CGCACACTTAGTGCTACATAGTCAATT
1 CGCACACTCAGTGCTATATAATCAACT
*
30566097 CGCACACTTAGTGCT
1 CGCACACTCAGTGCT
30566112 GCACAATTTA
Statistics
Matches: 444, Mismatches: 6, Indels: 6
0.97 0.01 0.01
Matches are distributed among these distances:
27 281 0.63
28 163 0.37
ACGTcount: A:0.31, C:0.29, G:0.14, T:0.26
Consensus pattern (27 bp):
CGCACACTCAGTGCTATATAATCAACT
Found at i:30565762 original size:54 final size:54
Alignment explanation
Indices: 30565632--30566111 Score: 852
Period size: 54 Copynumber: 8.8 Consensus size: 54
30565622 ATATTAAGTC
* * * *
30565632 CGCACACTCAGTGCTATATAATCAACTCGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAGTC-AACT
30565687 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAGTCAACT
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAGTCAACT
30565741 CGCACACTTAGTGCTACATAGTCAAACTCGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTC-AACTCGCACACTTAGTGCTACATAGTC-AACT
30565797 CGCACACTTAGTGCTACATAGTCAAACTCGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTC-AACTCGCACACTTAGTGCTACATAGTC-AACT
30565853 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAGTCAACT
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAGTCAACT
*
30565907 CGCACACTTAGTGCTACATAATCAAACTCGCACACTTAGTGCTACATAGTCAACT
1 CGCACACTTAGTGCTACATAGTC-AACTCGCACACTTAGTGCTACATAGTCAACT
30565962 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAGTCAACT
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAGTCAACT
30566016 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAGTCAACT
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAGTCAACT
*
30566070 CGCACACTTAGTGCTACATAGTCAATTCGCACACTTAGTGCT
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCT
30566112 GCACAATTTA
Statistics
Matches: 415, Mismatches: 7, Indels: 7
0.97 0.02 0.02
Matches are distributed among these distances:
54 179 0.43
55 153 0.37
56 83 0.20
ACGTcount: A:0.31, C:0.29, G:0.14, T:0.26
Consensus pattern (54 bp):
CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAGTCAACT
Found at i:30565769 original size:82 final size:82
Alignment explanation
Indices: 30565632--30566111 Score: 874
Period size: 82 Copynumber: 5.9 Consensus size: 82
30565622 ATATTAAGTC
* * * *
30565632 CGCACACTCAGTGCTATATAATCAACTCGCACACTTAGTGCTACATAATCAAACTCGCACACTTA
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAGTCAAACTCGCACACTTA
30565697 GTGCTACATAGTCAACT
66 GTGCTACATAGTCAACT
30565714 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAGTCAAACTCGCACACTTA
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAGTCAAACTCGCACACTTA
30565779 GTGCTACATAGTCAAACT
66 GTGCTACATAGTC-AACT
30565797 CGCACACTTAGTGCTACATAGTCAAACTCGCACACTTAGTGCTACATAGTCAAACTCGCACACTT
1 CGCACACTTAGTGCTACATAGTC-AACTCGCACACTTAGTGCTACATAGTCAAACTCGCACACTT
30565862 AGTGCTACATAGTCAACT
65 AGTGCTACATAGTCAACT
*
30565880 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAATCAAACTCGCACACTTA
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAGTCAAACTCGCACACTTA
30565945 GTGCTACATAGTCAACT
66 GTGCTACATAGTCAACT
30565962 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAGTC-AACTCGCACACTTA
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAGTCAAACTCGCACACTTA
30566026 GTGCTACATAGTCAACT
66 GTGCTACATAGTCAACT
*
30566043 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAGTC-AATTCGCACACTTA
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAGTCAAACTCGCACACTTA
30566107 GTGCT
66 GTGCT
30566112 GCACAATTTA
Statistics
Matches: 389, Mismatches: 7, Indels: 5
0.97 0.02 0.01
Matches are distributed among these distances:
81 99 0.25
82 181 0.47
83 54 0.14
84 55 0.14
ACGTcount: A:0.31, C:0.29, G:0.14, T:0.26
Consensus pattern (82 bp):
CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAGTCAAACTCGCACACTTA
GTGCTACATAGTCAACT
Found at i:30570776 original size:24 final size:24
Alignment explanation
Indices: 30570749--30570883 Score: 147
Period size: 24 Copynumber: 5.8 Consensus size: 24
30570739 GAGTCATGGT
30570749 CGGTAAGCTCTATTGAGCTGAAAA
1 CGGTAAGCTCTATTGAGCTGAAAA
30570773 CGGTAAGCTCTATTGAGCTGAAAA
1 CGGTAAGCTCTATTGAGCTGAAAA
30570797 CGGTAAGCTCTATTGAGCT-AAATA
1 CGGTAAGCTCTATTGAGCTGAAA-A
* * *
30570821 --GTAAGCTCTTTTGAGTTG-AAT
1 CGGTAAGCTCTATTGAGCTGAAAA
* *
30570842 CGGTAAGGTAC-AATGAGCT-AAAA
1 CGGTAAGCT-CTATTGAGCTGAAAA
* *
30570865 CAGTAAGCTCTTTTGAGCT
1 CGGTAAGCTCTATTGAGCT
30570884 ATGGTGAGTC
Statistics
Matches: 92, Mismatches: 12, Indels: 15
0.77 0.10 0.13
Matches are distributed among these distances:
22 18 0.20
23 29 0.32
24 45 0.49
ACGTcount: A:0.32, C:0.16, G:0.24, T:0.29
Consensus pattern (24 bp):
CGGTAAGCTCTATTGAGCTGAAAA
Found at i:30570870 original size:46 final size:47
Alignment explanation
Indices: 30570749--30570883 Score: 159
Period size: 46 Copynumber: 2.9 Consensus size: 47
30570739 GAGTCATGGT
* * *
30570749 CGGTAAGCTCTATTGAGCTGAAAACGGTAAGCTCTATTGAGCTGAAAA
1 CGGTAAGCTCTAATGAGCT-AAAACAGTAAGCTCTTTTGAGCTGAAAA
* * * *
30570797 CGGTAAGCTCTATTGAGCT-AAATAGTAAGCTCTTTTGAGTTG-AAT
1 CGGTAAGCTCTAATGAGCTAAAACAGTAAGCTCTTTTGAGCTGAAAA
*
30570842 CGGTAAGGTAC-AATGAGCTAAAACAGTAAGCTCTTTTGAGCT
1 CGGTAAGCT-CTAATGAGCTAAAACAGTAAGCTCTTTTGAGCT
30570884 ATGGTGAGTC
Statistics
Matches: 76, Mismatches: 9, Indels: 6
0.84 0.10 0.07
Matches are distributed among these distances:
45 17 0.22
46 40 0.53
48 19 0.25
ACGTcount: A:0.32, C:0.16, G:0.24, T:0.29
Consensus pattern (47 bp):
CGGTAAGCTCTAATGAGCTAAAACAGTAAGCTCTTTTGAGCTGAAAA
Found at i:30570875 original size:68 final size:70
Alignment explanation
Indices: 30570751--30570884 Score: 175
Period size: 68 Copynumber: 1.9 Consensus size: 70
30570741 GTCATGGTCG
* *
30570751 GTAAGCTCTATTGAGCTGAAAACGGTAAGCTCTATTGAGCTGAAAACGGTAAGCTCTATTGAGCT
1 GTAAGCTCTATTGAGCTGAAAACGGTAAGCTCTAATGAGCTGAAAACAGTAAGCTCTATTGAGCT
30570816 AAATA
66 AAATA
* * * * *
30570821 GTAAGCTCTTTTGAGTTG-AATCGGTAAGGTAC-AATGAGCT-AAAACAGTAAGCTCTTTTGAGC
1 GTAAGCTCTATTGAGCTGAAAACGGTAAGCT-CTAATGAGCTGAAAACAGTAAGCTCTATTGAGC
30570883 TA
65 TA
30570885 TGGTGAGTCC
Statistics
Matches: 56, Mismatches: 7, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
68 22 0.39
69 17 0.30
70 17 0.30
ACGTcount: A:0.33, C:0.15, G:0.23, T:0.29
Consensus pattern (70 bp):
GTAAGCTCTATTGAGCTGAAAACGGTAAGCTCTAATGAGCTGAAAACAGTAAGCTCTATTGAGCT
AAATA
Found at i:30574339 original size:43 final size:43
Alignment explanation
Indices: 30574289--30574404 Score: 148
Period size: 42 Copynumber: 2.7 Consensus size: 43
30574279 TCCCAAATGT
*
30574289 GGTCTTACATGTAATCACATATCGATGCCACTGTCCCAGACAG
1 GGTCTTACATGTAATCACATATCGATGCCAATGTCCCAGACAG
* * *
30574332 GGTCTTACATG-AA-CTCATATACAATGCCAATGTCCCAGACAT
1 GGTCTTACATGTAATCACATAT-CGATGCCAATGTCCCAGACAG
*
30574374 GGTCTTACACGTAAATCACA-ATCGATGCCAA
1 GGTCTTACATGT-AATCACATATCGATGCCAA
30574405 CATCCCTGAT
Statistics
Matches: 62, Mismatches: 7, Indels: 8
0.81 0.09 0.10
Matches are distributed among these distances:
41 6 0.10
42 30 0.48
43 19 0.31
44 4 0.06
45 3 0.05
ACGTcount: A:0.32, C:0.27, G:0.16, T:0.25
Consensus pattern (43 bp):
GGTCTTACATGTAATCACATATCGATGCCAATGTCCCAGACAG
Found at i:30580972 original size:43 final size:43
Alignment explanation
Indices: 30580925--30581033 Score: 191
Period size: 43 Copynumber: 2.5 Consensus size: 43
30580915 GCATTACGCT
30580925 TGCTAGGCACGAAGGCCCGAATACACATCACCGGCACAAAGCC
1 TGCTAGGCACGAAGGCCCGAATACACATCACCGGCACAAAGCC
* *
30580968 TGCTAGGCACGAAGGCCCGAATACACATCACTGGCACGAAGCC
1 TGCTAGGCACGAAGGCCCGAATACACATCACCGGCACAAAGCC
*
30581011 TGCTAGGCACGAAGGCTCGAATA
1 TGCTAGGCACGAAGGCCCGAATA
30581034 TGATACCAGC
Statistics
Matches: 63, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
43 63 1.00
ACGTcount: A:0.31, C:0.31, G:0.26, T:0.12
Consensus pattern (43 bp):
TGCTAGGCACGAAGGCCCGAATACACATCACCGGCACAAAGCC
Found at i:30581099 original size:38 final size:38
Alignment explanation
Indices: 30581031--30581128 Score: 90
Period size: 38 Copynumber: 2.6 Consensus size: 38
30581021 GAAGGCTCGA
* * * * **
30581031 ATATGATACCAGCACTAGGCCTGCGAGATTTATTCCGG
1 ATATAATACCAGCACGAAGCCTACGAGATTTAACCCGG
30581069 ATATAATACCAGCACGAAGCCTAC-AGGATTTAACCCGG
1 ATATAATACCAGCACGAAGCCTACGA-GATTTAACCCGG
** **
30581107 ATATTTTACCAGCTTGAAGCCT
1 ATATAATACCAGCACGAAGCCT
30581129 GCGGGTCTTT
Statistics
Matches: 49, Mismatches: 10, Indels: 2
0.80 0.16 0.03
Matches are distributed among these distances:
37 1 0.02
38 48 0.98
ACGTcount: A:0.31, C:0.24, G:0.19, T:0.26
Consensus pattern (38 bp):
ATATAATACCAGCACGAAGCCTACGAGATTTAACCCGG
Found at i:30592602 original size:40 final size:39
Alignment explanation
Indices: 30592543--30592674 Score: 151
Period size: 40 Copynumber: 3.3 Consensus size: 39
30592533 TATTTGAATG
*
30592543 ATATCCGGGCTAAGTCCCGAAGGCAATTGT-CTAAGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCT-AGTG-TT
* * * *
30592583 TTATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAG-TGTT
* *
30592623 ATACCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGT-GTT
30592663 ATATCC-GGCTAA
1 ATATCCGGGCTAA
30592675 ATTCCGAAGA
Statistics
Matches: 76, Mismatches: 13, Indels: 7
0.79 0.14 0.07
Matches are distributed among these distances:
39 6 0.08
40 67 0.88
41 3 0.04
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGTT
Found at i:30592950 original size:46 final size:45
Alignment explanation
Indices: 30592883--30592971 Score: 135
Period size: 46 Copynumber: 2.0 Consensus size: 45
30592873 GAAGTGTGAA
*
30592883 GTAAGTATGATTATGAGAATGTGAATTAATAAAGTGATTCATTNAC
1 GTAAGTATGATTATGAGAATGTGAATTAATAAAGTGATCCATT-AC
*
30592929 GTAAGTATG-TGTATGAGAATGTGTATTAATAAAGTGATCCATT
1 GTAAGTATGAT-TATGAGAATGTGAATTAATAAAGTGATCCATT
30592972 TAGCTATGTG
Statistics
Matches: 40, Mismatches: 2, Indels: 2
0.91 0.05 0.05
Matches are distributed among these distances:
45 1 0.03
46 39 0.98
ACGTcount: A:0.37, C:0.04, G:0.21, T:0.36
Consensus pattern (45 bp):
GTAAGTATGATTATGAGAATGTGAATTAATAAAGTGATCCATTAC
Found at i:30603560 original size:93 final size:93
Alignment explanation
Indices: 30603448--30603618 Score: 306
Period size: 93 Copynumber: 1.8 Consensus size: 93
30603438 GCCCATAAGT
* *
30603448 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
30603513 CGAGCTCGGATGCCTAGTTACATCTCTC
66 CGAGCTCGGATGCCTAGTTACATCTCTC
*
30603541 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
30603606 CGAGTTCGGATGC
66 CGAGCTCGGATGC
30603619 TCAACCATCC
Statistics
Matches: 74, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCTC
Found at i:30603615 original size:46 final size:46
Alignment explanation
Indices: 30603440--30603615 Score: 214
Period size: 46 Copynumber: 3.8 Consensus size: 46
30603430 TGTAACCCGC
* *
30603440 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
*
30603486 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG--ATGC-CTAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGC-A--T
* *** *
30603532 ACATCTCTCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
*
30603579 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
30603616 TGCTCAACCA
Statistics
Matches: 111, Mismatches: 12, Indels: 14
0.81 0.09 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
46 70 0.63
47 32 0.29
49 4 0.04
50 1 0.01
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
Found at i:30606050 original size:30 final size:30
Alignment explanation
Indices: 30606015--30606094 Score: 99
Period size: 30 Copynumber: 2.7 Consensus size: 30
30606005 CAAGGAAACC
*
30606015 GAATAAAGAAATCCAAGATAGAGAAACCCA
1 GAATAAAGAAATCCAAGATAAAGAAACCCA
* *
30606045 GAATAAAGAAATCC-AGAATAAAGAGATCCA
1 GAATAAAGAAATCCAAG-ATAAAGAAACCCA
* *
30606075 GGATAAAGAAACCCAAGATA
1 GAATAAAGAAATCCAAGATA
30606095 CGATACTATG
Statistics
Matches: 43, Mismatches: 5, Indels: 4
0.83 0.10 0.08
Matches are distributed among these distances:
29 2 0.05
30 39 0.91
31 2 0.05
ACGTcount: A:0.56, C:0.15, G:0.17, T:0.11
Consensus pattern (30 bp):
GAATAAAGAAATCCAAGATAAAGAAACCCA
Found at i:30606054 original size:15 final size:15
Alignment explanation
Indices: 30606015--30606085 Score: 90
Period size: 15 Copynumber: 4.7 Consensus size: 15
30606005 CAAGGAAACC
30606015 GAATAAAGAAATCCA
1 GAATAAAGAAATCCA
* *
30606030 -AGATAGAGAAACCCA
1 GA-ATAAAGAAATCCA
30606045 GAATAAAGAAATCCA
1 GAATAAAGAAATCCA
*
30606060 GAATAAAGAGATCCA
1 GAATAAAGAAATCCA
*
30606075 GGATAAAGAAA
1 GAATAAAGAAA
30606086 CCCAAGATAC
Statistics
Matches: 47, Mismatches: 7, Indels: 4
0.81 0.12 0.07
Matches are distributed among these distances:
14 1 0.02
15 45 0.96
16 1 0.02
ACGTcount: A:0.58, C:0.13, G:0.18, T:0.11
Consensus pattern (15 bp):
GAATAAAGAAATCCA
Found at i:30606094 original size:15 final size:15
Alignment explanation
Indices: 30606017--30606094 Score: 79
Period size: 15 Copynumber: 5.2 Consensus size: 15
30606007 AGGAAACCGA
30606017 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* *
30606032 ATAGAGAAA-CCCAG
1 ATAAAGAAATCCAAG
30606046 AATAAAGAAATCC-AG
1 -ATAAAGAAATCCAAG
* *
30606061 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
30606077 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
30606092 ATA
1 ATA
30606095 CGATACTATG
Statistics
Matches: 52, Mismatches: 8, Indels: 6
0.79 0.12 0.09
Matches are distributed among these distances:
14 4 0.08
15 45 0.87
16 3 0.06
ACGTcount: A:0.56, C:0.15, G:0.17, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:30609145 original size:93 final size:93
Alignment explanation
Indices: 30609033--30609203 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
30609023 GCCCATAAGT
* *
30609033 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
30609098 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
30609126 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
30609191 CGAGTTCGGATGC
66 CGAGTTCGGATGC
30609204 TCAACCATCC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Done.