Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr3
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 100348136
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 3062571 characters in sequence are not A, C, G, or T
File 96 of 290
Found at i:32419969 original size:31 final size:32
Alignment explanation
Indices: 32419931--32419998 Score: 102
Period size: 31 Copynumber: 2.2 Consensus size: 32
32419921 TTTAAAACCC
*
32419931 TAAAACCCCAAACAACCTAAAACCCT-AGTAA
1 TAAAACCCCAAAAAACCTAAAACCCTAAGTAA
* *
32419962 TAAAACCCTAAAAAACCTAAAACCCTAATTAA
1 TAAAACCCCAAAAAACCTAAAACCCTAAGTAA
32419994 TAAAA
1 TAAAA
32419999 ACCTAAACCA
Statistics
Matches: 33, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
31 24 0.73
32 9 0.27
ACGTcount: A:0.56, C:0.26, G:0.01, T:0.16
Consensus pattern (32 bp):
TAAAACCCCAAAAAACCTAAAACCCTAAGTAA
Found at i:32420004 original size:32 final size:31
Alignment explanation
Indices: 32419944--32420005 Score: 97
Period size: 32 Copynumber: 2.0 Consensus size: 31
32419934 AACCCCAAAC
*
32419944 AACCTAAAACCCTAGTAATAAAACCCTAAAA
1 AACCTAAAACCCTAGTAATAAAAACCTAAAA
*
32419975 AACCTAAAACCCTAATTAATAAAAACCTAAA
1 AACCTAAAACCCT-AGTAATAAAAACCTAAA
32420006 CCACTAGAAA
Statistics
Matches: 28, Mismatches: 2, Indels: 1
0.90 0.06 0.03
Matches are distributed among these distances:
31 13 0.46
32 15 0.54
ACGTcount: A:0.56, C:0.24, G:0.02, T:0.18
Consensus pattern (31 bp):
AACCTAAAACCCTAGTAATAAAAACCTAAAA
Found at i:32420005 original size:8 final size:8
Alignment explanation
Indices: 32419923--32419989 Score: 50
Period size: 8 Copynumber: 8.4 Consensus size: 8
32419913 TTTATCAATT
32419923 TAAAACCC
1 TAAAACCC
32419931 TAAAACCC
1 TAAAACCC
* *
32419939 CAAACAACC
1 TAAA-ACCC
32419948 TAAAACCC
1 TAAAACCC
*
32419956 TAGTAA---
1 TA-AAACCC
32419962 TAAAACCC
1 TAAAACCC
*
32419970 TAAAAAACC
1 T-AAAACCC
32419979 TAAAACCC
1 TAAAACCC
32419987 TAA
1 TAA
32419990 TTAATAAAAA
Statistics
Matches: 45, Mismatches: 8, Indels: 12
0.69 0.12 0.18
Matches are distributed among these distances:
5 2 0.04
6 2 0.04
8 26 0.58
9 15 0.33
ACGTcount: A:0.54, C:0.31, G:0.01, T:0.13
Consensus pattern (8 bp):
TAAAACCC
Found at i:32435111 original size:22 final size:23
Alignment explanation
Indices: 32435056--32435104 Score: 73
Period size: 23 Copynumber: 2.2 Consensus size: 23
32435046 AGTTAGGGGC
* *
32435056 AAATGTATAATTTTTGTAAATAG
1 AAATGTATAATTTTTGTAAAAAA
32435079 AAATGTATAATTTTT-TAAAAAA
1 AAATGTATAATTTTTGTAAAAAA
32435101 AAAT
1 AAAT
32435105 TATTAATAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
22 9 0.38
23 15 0.62
ACGTcount: A:0.51, C:0.00, G:0.08, T:0.41
Consensus pattern (23 bp):
AAATGTATAATTTTTGTAAAAAA
Found at i:32435432 original size:40 final size:40
Alignment explanation
Indices: 32435388--32435556 Score: 212
Period size: 40 Copynumber: 4.2 Consensus size: 40
32435378 AGGTTATATA
* *
32435388 TGAATGCACATACATGCCCCCGTTTGTACTTCGGTACCCT
1 TGAATGCACATACGTGCCCCTGTTTGTACTTCGGTACCCT
* * *
32435428 TGAATGCACATACGTGCCCTTGTTTGTACTTCGATACCCC
1 TGAATGCACATACGTGCCCCTGTTTGTACTTCGGTACCCT
* * * ** *
32435468 TGAATGCATATATGTGTCGTTGTTTGTACTTCAGTACCCT
1 TGAATGCACATACGTGCCCCTGTTTGTACTTCGGTACCCT
*
32435508 TGAATGCACATACGTGCCCCTGTTTGTACTTTGGTACCCT
1 TGAATGCACATACGTGCCCCTGTTTGTACTTCGGTACCCT
*
32435548 CTAAATGCA
1 -TGAATGCA
32435557 TTTTAATGTC
Statistics
Matches: 108, Mismatches: 20, Indels: 1
0.84 0.16 0.01
Matches are distributed among these distances:
40 101 0.94
41 7 0.06
ACGTcount: A:0.21, C:0.27, G:0.18, T:0.34
Consensus pattern (40 bp):
TGAATGCACATACGTGCCCCTGTTTGTACTTCGGTACCCT
Found at i:32435505 original size:80 final size:81
Alignment explanation
Indices: 32435409--32435557 Score: 246
Period size: 80 Copynumber: 1.9 Consensus size: 81
32435399 ACATGCCCCC
* * *
32435409 GTTTGTACTTCGGTACCCTTGAATGCACATACGTGCCCTTGTTTGTACTTCGATACCC-CTGAAT
1 GTTTGTACTTCAGTACCCTTGAATGCACATACGTGCCCCTGTTTGTACTTCGATACCCTCTAAAT
32435473 GCATATATGTGTCGTT
66 GCATATATGTGTCGTT
* *
32435489 GTTTGTACTTCAGTACCCTTGAATGCACATACGTGCCCCTGTTTGTACTTTGGTACCCTCTAAAT
1 GTTTGTACTTCAGTACCCTTGAATGCACATACGTGCCCCTGTTTGTACTTCGATACCCTCTAAAT
32435554 GCAT
66 GCAT
32435558 TTTAATGTCT
Statistics
Matches: 63, Mismatches: 5, Indels: 1
0.91 0.07 0.01
Matches are distributed among these distances:
80 54 0.86
81 9 0.14
ACGTcount: A:0.19, C:0.25, G:0.19, T:0.37
Consensus pattern (81 bp):
GTTTGTACTTCAGTACCCTTGAATGCACATACGTGCCCCTGTTTGTACTTCGATACCCTCTAAAT
GCATATATGTGTCGTT
Found at i:32436735 original size:19 final size:19
Alignment explanation
Indices: 32436711--32436754 Score: 54
Period size: 19 Copynumber: 2.3 Consensus size: 19
32436701 GACCCCTACA
* *
32436711 TCTCAAATTTTCATG-TTTT
1 TCTCAAAATTT-ATGATTTG
32436730 TCTCAAAATTTATGATTTG
1 TCTCAAAATTTATGATTTG
32436749 TCTCAA
1 TCTCAA
32436755 TTTGATCCCT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
18 3 0.14
19 19 0.86
ACGTcount: A:0.27, C:0.16, G:0.07, T:0.50
Consensus pattern (19 bp):
TCTCAAAATTTATGATTTG
Found at i:32437291 original size:86 final size:86
Alignment explanation
Indices: 32437134--32437294 Score: 209
Period size: 86 Copynumber: 1.9 Consensus size: 86
32437124 TTTAAATTTG
* * * *
32437134 GTGAATTCATCAAGTCCGTCTCACTAGGACCACCTAAACTATGGATATGAACTCATTAAGAGTAA
1 GTGAATTCATCAAGTCCGTCTCAATAGGACCACCCAAACTATGGACATGAACTAATTAAGAGTAA
32437199 TAAACTCAACCTCACATGTTA
66 TAAACTCAACCTCACATGTTA
** * *
32437220 GTGAATTCATCAAGTTTGTCTCAATAGGACCACCCAAACCT-TGGGCCATGAATTAATTAAGAGT
1 GTGAATTCATCAAGTCCGTCTCAATAGGACCACCCAAA-CTAT-GGACATGAACTAATTAAGAGT
*
32437284 AA-GAACTCAAC
64 AATAAACTCAAC
32437295 TGTAACACCC
Statistics
Matches: 64, Mismatches: 9, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
86 43 0.67
87 21 0.33
ACGTcount: A:0.36, C:0.22, G:0.16, T:0.26
Consensus pattern (86 bp):
GTGAATTCATCAAGTCCGTCTCAATAGGACCACCCAAACTATGGACATGAACTAATTAAGAGTAA
TAAACTCAACCTCACATGTTA
Found at i:32445244 original size:93 final size:93
Alignment explanation
Indices: 32445137--32445307 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
32445127 GCCCCTAAGT
* *
32445137 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
32445202 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
32445230 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
32445295 CGAGTTCGGATGC
66 CGAGTTCGGATGC
32445308 TCAACCATCC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:32445304 original size:46 final size:46
Alignment explanation
Indices: 32445132--32445304 Score: 219
Period size: 46 Copynumber: 3.7 Consensus size: 46
32445122 AACCCGCCCC
* * *
32445132 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
*
32445178 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCATCCA
* *
32445226 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
32445271 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
32445305 TGCTCAACCA
Statistics
Matches: 109, Mismatches: 9, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 61 0.56
47 29 0.27
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.21
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
Found at i:32445761 original size:30 final size:30
Alignment explanation
Indices: 32445727--32445786 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
32445717 ATTTAATACG
32445727 AACTTTGGAAAAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
* * *
32445757 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
32445787 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.30, C:0.25, G:0.08, T:0.37
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Found at i:32452834 original size:93 final size:93
Alignment explanation
Indices: 32452727--32452897 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
32452717 GCCCCTAAGT
* *
32452727 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
32452792 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
32452820 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
32452885 CGAGTTCGGATGC
66 CGAGTTCGGATGC
32452898 TCAACCATCC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:32452894 original size:46 final size:46
Alignment explanation
Indices: 32452722--32452894 Score: 219
Period size: 46 Copynumber: 3.7 Consensus size: 46
32452712 AACCCGCCCC
* * *
32452722 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
*
32452768 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCATCCA
* *
32452816 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
32452861 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
32452895 TGCTCAACCA
Statistics
Matches: 109, Mismatches: 9, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 61 0.56
47 29 0.27
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.21
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
Found at i:32453351 original size:30 final size:30
Alignment explanation
Indices: 32453317--32453376 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
32453307 ATTTAATACG
32453317 AACTTTGGAAAAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
* * *
32453347 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
32453377 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.30, C:0.25, G:0.08, T:0.37
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Found at i:32457886 original size:236 final size:236
Alignment explanation
Indices: 32457473--32457945 Score: 946
Period size: 236 Copynumber: 2.0 Consensus size: 236
32457463 ATTGAGATCA
32457473 CGAATTACCCGTCCGGGCTAAATCCTTACTGTAACACATGTAGGATCTCAAATCACATGTAATTA
1 CGAATTACCCGTCCGGGCTAAATCCTTACTGTAACACATGTAGGATCTCAAATCACATGTAATTA
32457538 CGGGTTACCATCGAATTCCCTTTGTCAACCTCAACCGAGACATTTTTCACATGTTACCGTCAAAT
66 CGGGTTACCATCGAATTCCCTTTGTCAACCTCAACCGAGACATTTTTCACATGTTACCGTCAAAT
32457603 GTGCATTTCTATAGTATTTCATGCCAATAATAAATGCAATCATTATGCATTCATAAATCATACAA
131 GTGCATTTCTATAGTATTTCATGCCAATAATAAATGCAATCATTATGCATTCATAAATCATACAA
32457668 TTATGCATATTAGGGGTTTACTTTAAGTTATTTGAACTTAC
196 TTATGCATATTAGGGGTTTACTTTAAGTTATTTGAACTTAC
32457709 CGAATTACCCGTCCGGGCTAAATCCTTACTGTAACACATGTAGGATCTCAAATCACATGTAATTA
1 CGAATTACCCGTCCGGGCTAAATCCTTACTGTAACACATGTAGGATCTCAAATCACATGTAATTA
32457774 CGGGTTACCATCGAATTCCCTTTGTCAACCTCAACCGAGACATTTTTCACATGTTACCGTCAAAT
66 CGGGTTACCATCGAATTCCCTTTGTCAACCTCAACCGAGACATTTTTCACATGTTACCGTCAAAT
32457839 GTGCATTTCTATAGTATTTCATGCCAATAATAAATGCAATCATTATGCATTCATAAATCATACAA
131 GTGCATTTCTATAGTATTTCATGCCAATAATAAATGCAATCATTATGCATTCATAAATCATACAA
32457904 TTATGCATATTAGGGGTTTACTTTAAGTTATTTGAACTTAC
196 TTATGCATATTAGGGGTTTACTTTAAGTTATTTGAACTTAC
32457945 C
1 C
32457946 TGGTAATTGT
Statistics
Matches: 237, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
236 237 1.00
ACGTcount: A:0.31, C:0.21, G:0.14, T:0.34
Consensus pattern (236 bp):
CGAATTACCCGTCCGGGCTAAATCCTTACTGTAACACATGTAGGATCTCAAATCACATGTAATTA
CGGGTTACCATCGAATTCCCTTTGTCAACCTCAACCGAGACATTTTTCACATGTTACCGTCAAAT
GTGCATTTCTATAGTATTTCATGCCAATAATAAATGCAATCATTATGCATTCATAAATCATACAA
TTATGCATATTAGGGGTTTACTTTAAGTTATTTGAACTTAC
Found at i:32463672 original size:22 final size:20
Alignment explanation
Indices: 32463647--32463692 Score: 56
Period size: 20 Copynumber: 2.2 Consensus size: 20
32463637 TGGGCTTAGT
32463647 AAAACACAAAGGAACGATAAAA
1 AAAACACAAA--AACGATAAAA
* *
32463669 AAAACATAAAAATGATAAAA
1 AAAACACAAAAACGATAAAA
32463689 AAAA
1 AAAA
32463693 TCGAACTGAA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
20 13 0.59
22 9 0.41
ACGTcount: A:0.74, C:0.09, G:0.09, T:0.09
Consensus pattern (20 bp):
AAAACACAAAAACGATAAAA
Found at i:32466183 original size:14 final size:14
Alignment explanation
Indices: 32466164--32466194 Score: 62
Period size: 14 Copynumber: 2.2 Consensus size: 14
32466154 TCCTTTAAAA
32466164 ATTATTATATATAT
1 ATTATTATATATAT
32466178 ATTATTATATATAT
1 ATTATTATATATAT
32466192 ATT
1 ATT
32466195 TTAAGTTATT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (14 bp):
ATTATTATATATAT
Found at i:32466374 original size:25 final size:25
Alignment explanation
Indices: 32466340--32466387 Score: 62
Period size: 25 Copynumber: 1.9 Consensus size: 25
32466330 TTAAATTAAC
32466340 TATTATATATTA-CTTAATTTAAAAT
1 TATTATATA-TACCTTAATTTAAAAT
* *
32466365 TATTTTATATACCTTATTTTAAA
1 TATTATATATACCTTAATTTAAA
32466388 CCCATTTTAC
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
24 2 0.10
25 18 0.90
ACGTcount: A:0.40, C:0.06, G:0.00, T:0.54
Consensus pattern (25 bp):
TATTATATATACCTTAATTTAAAAT
Found at i:32472496 original size:524 final size:524
Alignment explanation
Indices: 32471508--32472558 Score: 2084
Period size: 524 Copynumber: 2.0 Consensus size: 524
32471498 ATCAGTTGAG
32471508 TTGTGCAAGAATCAGTTCATGGAGAGATCTTGCACAGGCTTTCATGCAACAGTATAACCATGTGA
1 TTGTGCAAGAATCAGTTCATGGAGAGATCTTGCACAGGCTTTCATGCAACAGTATAACCATGTGA
32471573 CTGATATGACGCCAGATGGGATCACACTTCAAAACATGGAGAAAAAACCTAATGAAAGTTTTAGG
66 CTGATATGACGCCAGATGGGATCACACTTCAAAACATGGAGAAAAAACCTAATGAAAGTTTTAGG
32471638 CAATATGCACAACGATGGAGGGAGGTGGCAATGCAAGTACAACCACCATTGTTGGAAAAGGAAAC
131 CAATATGCACAACGATGGAGGGAGGTGGCAATGCAAGTACAACCACCATTGTTGGAAAAGGAAAC
32471703 CACAATGTTATTTATTAATACTTTGAAGGCGCCATTCATCACACATATGATTGGAAGTACCACAA
196 CACAATGTTATTTATTAATACTTTGAAGGCGCCATTCATCACACATATGATTGGAAGTACCACAA
32471768 AAAGTTTCACGGATATAGTTATGGCGGGTGAGATGATTGAGAATGCCGTGAGAGGCGGTAAAATA
261 AAAGTTTCACGGATATAGTTATGGCGGGTGAGATGATTGAGAATGCCGTGAGAGGCGGTAAAATA
32471833 GAGGGAGAAGTGACTAAAAGATCGGCTCCAAGGAGAAAAGACAATGAGGTAAACAACATGAATAG
326 GAGGGAGAAGTGACTAAAAGATCGGCTCCAAGGAGAAAAGACAATGAGGTAAACAACATGAATAG
32471898 CTTCAATTCCAGGGCAATCACAGTTGGACAACCTAAAGCAGCTACGGGTGAGCAACAAAATACTC
391 CTTCAATTCCAGGGCAATCACAGTTGGACAACCTAAAGCAGCTACGGGTGAGCAACAAAATACTC
32471963 AAAGATAGGAATCTGGTACGAGACAGAATTCGGAGAGGATGCAATTCACTCCTATCCCTGTGACA
456 AAAGATAGGAATCTGGTACGAGACAGAATTCGGAGAGGATGCAATTCACTCCTATCCCTGTGACA
32472028 TATC
521 TATC
32472032 TTGTGCAAGAATCAGTTCATGGAGAGATCTTGCACAGGCTTTCATGCAACAGTATAACCATGTGA
1 TTGTGCAAGAATCAGTTCATGGAGAGATCTTGCACAGGCTTTCATGCAACAGTATAACCATGTGA
*
32472097 CTGATATGACGCCAGATGGGATCACACTTCAAAACATGGAGAAAAAACCTAATGAGAGTTTTAGG
66 CTGATATGACGCCAGATGGGATCACACTTCAAAACATGGAGAAAAAACCTAATGAAAGTTTTAGG
32472162 CAATATGCACAACGATGGAGGGAGGTGGCAATGCAAGTACAACCACCATTGTTGGAAAAGGAAAC
131 CAATATGCACAACGATGGAGGGAGGTGGCAATGCAAGTACAACCACCATTGTTGGAAAAGGAAAC
*
32472227 CACCATGTTATTTATTAATACTTTGAAGGCGCCATTCATCACACATATGATTGGAAGTACCACAA
196 CACAATGTTATTTATTAATACTTTGAAGGCGCCATTCATCACACATATGATTGGAAGTACCACAA
32472292 AAAGTTTCACGGATATAGTTATGGCGGGTGAGATGATTGAGAATGCCGTGAGAGGCGGTAAAATA
261 AAAGTTTCACGGATATAGTTATGGCGGGTGAGATGATTGAGAATGCCGTGAGAGGCGGTAAAATA
32472357 GAGGGAGAAGTGACTAAAAGATCGGCTCCAAGGAGAAAAGACAATGAGGTAAACAACATGAATAG
326 GAGGGAGAAGTGACTAAAAGATCGGCTCCAAGGAGAAAAGACAATGAGGTAAACAACATGAATAG
32472422 CTTCAATTCCAGGGCAATCACAGTTGGACAACCTAAAGCAGCTACGGGTGAGCAACAAAATACTC
391 CTTCAATTCCAGGGCAATCACAGTTGGACAACCTAAAGCAGCTACGGGTGAGCAACAAAATACTC
32472487 AAAGATAGGAATCTGGTACGAGACAGAATTCGGAGAGGATGCAATTCACTCCTATCCCTGTGACA
456 AAAGATAGGAATCTGGTACGAGACAGAATTCGGAGAGGATGCAATTCACTCCTATCCCTGTGACA
32472552 TATC
521 TATC
32472556 TTG
1 TTG
32472559 AGCTTTATCA
Statistics
Matches: 525, Mismatches: 2, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
524 525 1.00
ACGTcount: A:0.36, C:0.18, G:0.24, T:0.22
Consensus pattern (524 bp):
TTGTGCAAGAATCAGTTCATGGAGAGATCTTGCACAGGCTTTCATGCAACAGTATAACCATGTGA
CTGATATGACGCCAGATGGGATCACACTTCAAAACATGGAGAAAAAACCTAATGAAAGTTTTAGG
CAATATGCACAACGATGGAGGGAGGTGGCAATGCAAGTACAACCACCATTGTTGGAAAAGGAAAC
CACAATGTTATTTATTAATACTTTGAAGGCGCCATTCATCACACATATGATTGGAAGTACCACAA
AAAGTTTCACGGATATAGTTATGGCGGGTGAGATGATTGAGAATGCCGTGAGAGGCGGTAAAATA
GAGGGAGAAGTGACTAAAAGATCGGCTCCAAGGAGAAAAGACAATGAGGTAAACAACATGAATAG
CTTCAATTCCAGGGCAATCACAGTTGGACAACCTAAAGCAGCTACGGGTGAGCAACAAAATACTC
AAAGATAGGAATCTGGTACGAGACAGAATTCGGAGAGGATGCAATTCACTCCTATCCCTGTGACA
TATC
Found at i:32476424 original size:40 final size:40
Alignment explanation
Indices: 32476379--32476882 Score: 909
Period size: 40 Copynumber: 12.6 Consensus size: 40
32476369 CAAGCTCAAT
* * *
32476379 TGCCTTCGGGTCTTAACCCGGGTATAGCAACTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCACAAA
*
32476419 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCACAAA
* *
32476459 TGCCTTCGGGTCTTATCCCGGATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCACAAA
* *
32476499 TGCCTTCGGGTCTTATCCCGGATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCACAAA
32476539 TGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCACAAA
32476579 TGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCACAAA
32476619 TGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCACAAA
32476659 TGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCACAAA
32476699 TGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCACAAA
32476739 TGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCACAAA
32476779 TGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCACAAA
* *
32476819 TGCCTTCGGGTCTTAGCCCGGATATATCAACTTGCACAAT
1 TGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCACAAA
*
32476859 TGCCTTCGGGACTTAGCCCGGATA
1 TGCCTTCGGGTCTTAGCCCGGATA
32476883 AAATTCAAAT
Statistics
Matches: 454, Mismatches: 10, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
40 454 1.00
ACGTcount: A:0.24, C:0.29, G:0.20, T:0.26
Consensus pattern (40 bp):
TGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCACAAA
Found at i:32483439 original size:204 final size:204
Alignment explanation
Indices: 32482969--32483679 Score: 1036
Period size: 205 Copynumber: 3.5 Consensus size: 204
32482959 AGCATAACAA
* *
32482969 ATCTGGCCTTCAGATG-TTATATGAAGCAGATCCAAGATGGTTTGGCATCCTTGTGTTTACAAGG
1 ATCTCGCCTTCAGATGTTTATCTGAAGCAGATCCAAGATGGTTTGGCATCCTTGTGTTTACAAGG
*
32483033 AGCAAATCGAAGACATAGCTGATTTGGCTTTCACGTGATTACGATGAAGCAAATCTAAGATGATT
66 AACAAATCGAAGACATAGCTGATTTGGCTTTCACGTGATTACGATGAAGCAAATCTAAGATGATT
*
32483098 TGTCGTCTCTGTATTGTCAGAGAACGAATCGAAGTTTGGCATCTTCACTTTGATGGAGAGCAGAC
131 TGTCGTCTCTGTATTGTCAGAGAACGAATCAAAGTTTGGCATCTTCACTTTGATGGAGAGCAGAC
32483163 ACATAGCAG
196 ACATAGCAG
* * *
32483172 ATCTCACCTTCAGATGATTTCA-CTGAAGTAGATCCAAGATGGTTTGGCATCTTTGTGTTTACAA
1 ATCTCGCCTTCAGATG-TTT-ATCTGAAGCAGATCCAAGATGGTTTGGCATCCTTGTGTTTACAA
* *
32483236 GGAACAAATCGAAGACATAGCTGATTTGGCTTTCACGTGATTACAATGAAGCAAACCTAAGATGA
64 GGAACAAATCGAAGACATAGCTGATTTGGCTTTCACGTGATTACGATGAAGCAAATCTAAGATGA
32483301 TTTGTCGTCTCTGTATT-TCAGAGAACGAATCAAAGTTTGGCATCTTCACTTTGATGGAGAGCAG
129 TTTGTCGTCTCTGTATTGTCAGAGAACGAATCAAAGTTTGGCATCTTCACTTTGATGGAGAGCAG
32483365 ACACATAGCAG
194 ACACATAGCAG
* * *
32483376 ATCTCGCCTTCGGATGTTTATGCTGAAGCGGATCCAAGATGGTTTGGAATCCTTGTGTTTACAAG
1 ATCTCGCCTTCAGATGTTTAT-CTGAAGCAGATCCAAGATGGTTTGGCATCCTTGTGTTTACAAG
* * * *
32483441 GAACAAATCGAAGACATAGCTGATTTGGTTTTCACGTGTTTACGTTGAAACAAATCTAAGATGAT
65 GAACAAATCGAAGACATAGCTGATTTGGCTTTCACGTGATTACGATGAAGCAAATCTAAGATGAT
** * * * * *
32483506 TTGTCGTCTCTGTATTGTCAGAGAAAAAATCAAAGTCTGGCATCTCCA-TTTCAATAGAGAGCAA
130 TTGTCGTCTCTGTATTGTCAGAGAACGAATCAAAGTTTGGCATCTTCACTTT-GATGGAGAGCAG
*
32483570 ATACATAGCAG
194 ACACATAGCAG
* * *
32483581 ATCT-GATCTTCAGATGTTTATACTGAAGCAAGATCCAAGATGATTTGGCATCCTTGTGCTTACA
1 ATCTCG-CCTTCAGATGTTTAT-CTGAAGC-AGATCCAAGATGGTTTGGCATCCTTGTGTTTACA
* ** * *
32483645 AAGAACAAATTAAAGACATAGCAGATTTGACTTTC
63 AGGAACAAATCGAAGACATAGCTGATTTGGCTTTC
32483680 GGATGTTCCC
Statistics
Matches: 457, Mismatches: 42, Indels: 15
0.89 0.08 0.03
Matches are distributed among these distances:
202 1 0.00
203 17 0.04
204 189 0.41
205 190 0.42
206 60 0.13
ACGTcount: A:0.31, C:0.17, G:0.22, T:0.30
Consensus pattern (204 bp):
ATCTCGCCTTCAGATGTTTATCTGAAGCAGATCCAAGATGGTTTGGCATCCTTGTGTTTACAAGG
AACAAATCGAAGACATAGCTGATTTGGCTTTCACGTGATTACGATGAAGCAAATCTAAGATGATT
TGTCGTCTCTGTATTGTCAGAGAACGAATCAAAGTTTGGCATCTTCACTTTGATGGAGAGCAGAC
ACATAGCAG
Found at i:32485516 original size:14 final size:14
Alignment explanation
Indices: 32485497--32485523 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
32485487 TTAAAAATTG
32485497 TTATATATATATTT
1 TTATATATATATTT
32485511 TTATATATATATT
1 TTATATATATATT
32485524 AAGTTATTGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (14 bp):
TTATATATATATTT
Found at i:32485699 original size:25 final size:25
Alignment explanation
Indices: 32485666--32485713 Score: 62
Period size: 25 Copynumber: 1.9 Consensus size: 25
32485656 CTAAATTAAC
*
32485666 TATTATATATTA-TTTATTTTAAAAT
1 TATTATATA-TACCTTATTTTAAAAT
*
32485691 TATTTTATATACCTTATTTTAAA
1 TATTATATATACCTTATTTTAAA
32485714 CCCATTTTAC
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
24 2 0.10
25 18 0.90
ACGTcount: A:0.38, C:0.04, G:0.00, T:0.58
Consensus pattern (25 bp):
TATTATATATACCTTATTTTAAAAT
Found at i:32488412 original size:46 final size:46
Alignment explanation
Indices: 32488362--32488630 Score: 275
Period size: 46 Copynumber: 5.8 Consensus size: 46
32488352 TGGTTGAGCA
32488362 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
32488408 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
32488453 CATCCGAACTCGTTGTGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * *
32488501 TCTGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
32488546 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * *
32488594 CCCGAGCTCGTTGAGTTGAGTCTGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
32488631 GCGGGTTACA
Statistics
Matches: 184, Mismatches: 21, Indels: 36
0.76 0.09 0.15
Matches are distributed among these distances:
42 4 0.02
43 10 0.05
45 6 0.03
46 89 0.48
47 56 0.30
48 6 0.03
50 9 0.05
51 4 0.02
ACGTcount: A:0.21, C:0.20, G:0.29, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:32488518 original size:93 final size:93
Alignment explanation
Indices: 32488359--32488623 Score: 476
Period size: 93 Copynumber: 2.8 Consensus size: 93
32488349 GGATGGTTGA
32488359 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
32488424 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* *
32488452 GCATCCGAACTCGTTGTGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCTGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
32488517 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* * *
32488545 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
*
32488610 TGAGTCTGAGTTCG
66 TGAGTCCGAGTTCG
32488624 CTTATGGGCG
Statistics
Matches: 164, Mismatches: 8, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 164 1.00
ACGTcount: A:0.21, C:0.20, G:0.29, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:32490771 original size:40 final size:40
Alignment explanation
Indices: 32490682--32490945 Score: 360
Period size: 40 Copynumber: 6.7 Consensus size: 40
32490672 TTGAATGATG
* *
32490682 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTAAGTGAC-AATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAA-A
* * *
32490721 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
32490761 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
32490800 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
32490840 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
32490880 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAATTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
32490921 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
32490946 AACGAGGAGC
Statistics
Matches: 206, Mismatches: 12, Indels: 13
0.89 0.05 0.06
Matches are distributed among these distances:
39 53 0.26
40 143 0.69
41 10 0.05
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:32490963 original size:120 final size:118
Alignment explanation
Indices: 32490682--32490978 Score: 338
Period size: 119 Copynumber: 2.5 Consensus size: 118
32490672 TTGAATGATG
* *
32490682 TCCGGGCTAAGTCCCGAAGGC-TTGTG--CTAAGTGAC-AATATCCGGACTAAGAT-CCGAAGGC
1 TCCGGGCTAAGTCCCGAAGGCATT-TGAAC-GAGTGACTAA-ATCCGG-TTAA-ATCCCGAAGGC
* *
32490742 ATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAA
61 ATTTGTGCGAGATACTAAATCCGGGCTAAGCCCGAAGGCATTTGTGCGAATTACTAAA
* ** * *
32490800 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCATTTGAACGAGTGACTAAATCC-GGTTAAATCCCGAAGGCATTT
* *
32490865 GTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAATTACTATAA
65 GTGCGAGATACTAAATCCGGGCTAAG-CCCGAAGGCATTTGTGCGAATTACTA-AA
* * *
32490921 -CCGGGCTATGTCCCGAAGGCATTTGAACGAG-GAGCTATATCCGGTTAAATTCCGAAGG
1 TCCGGGCTAAGTCCCGAAGGCATTTGAACGAGTGA-CTAAATCCGGTTAAATCCCGAAGG
32490979 TACGTGATTT
Statistics
Matches: 153, Mismatches: 17, Indels: 17
0.82 0.09 0.09
Matches are distributed among these distances:
118 23 0.15
119 64 0.42
120 64 0.42
121 2 0.01
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.25
Consensus pattern (118 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGAACGAGTGACTAAATCCGGTTAAATCCCGAAGGCATTTG
TGCGAGATACTAAATCCGGGCTAAGCCCGAAGGCATTTGTGCGAATTACTAAA
Found at i:32498274 original size:40 final size:40
Alignment explanation
Indices: 32498185--32498448 Score: 360
Period size: 40 Copynumber: 6.7 Consensus size: 40
32498175 TTGAATGATG
* *
32498185 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTAAGTGAC-AATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAA-A
* * *
32498224 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
32498264 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
32498303 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
32498343 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
32498383 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAATTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
32498424 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
32498449 AACGAGGAGC
Statistics
Matches: 206, Mismatches: 12, Indels: 13
0.89 0.05 0.06
Matches are distributed among these distances:
39 53 0.26
40 143 0.69
41 10 0.05
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:32498466 original size:120 final size:118
Alignment explanation
Indices: 32498185--32498481 Score: 338
Period size: 119 Copynumber: 2.5 Consensus size: 118
32498175 TTGAATGATG
* *
32498185 TCCGGGCTAAGTCCCGAAGGC-TTGTG--CTAAGTGAC-AATATCCGGACTAAGAT-CCGAAGGC
1 TCCGGGCTAAGTCCCGAAGGCATT-TGAAC-GAGTGACTAA-ATCCGG-TTAA-ATCCCGAAGGC
* *
32498245 ATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAA
61 ATTTGTGCGAGATACTAAATCCGGGCTAAGCCCGAAGGCATTTGTGCGAATTACTAAA
* ** * *
32498303 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCATTTGAACGAGTGACTAAATCC-GGTTAAATCCCGAAGGCATTT
* *
32498368 GTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAATTACTATAA
65 GTGCGAGATACTAAATCCGGGCTAAG-CCCGAAGGCATTTGTGCGAATTACTA-AA
* * *
32498424 -CCGGGCTATGTCCCGAAGGCATTTGAACGAG-GAGCTATATCCGGTTAAATTCCGAAGG
1 TCCGGGCTAAGTCCCGAAGGCATTTGAACGAGTGA-CTAAATCCGGTTAAATCCCGAAGG
32498482 TACGTGATTT
Statistics
Matches: 153, Mismatches: 17, Indels: 17
0.82 0.09 0.09
Matches are distributed among these distances:
118 23 0.15
119 64 0.42
120 64 0.42
121 2 0.01
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.25
Consensus pattern (118 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGAACGAGTGACTAAATCCGGTTAAATCCCGAAGGCATTTG
TGCGAGATACTAAATCCGGGCTAAGCCCGAAGGCATTTGTGCGAATTACTAAA
Found at i:32505930 original size:46 final size:46
Alignment explanation
Indices: 32505880--32506148 Score: 275
Period size: 46 Copynumber: 5.8 Consensus size: 46
32505870 TGGTTGAGCA
32505880 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
32505926 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
32505971 CATCCGAACTCGTTGTGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * *
32506019 TCTGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
32506064 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * *
32506112 CCCGAGCTCGTTGAGTTGAGTCTGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
32506149 GCGGGTTACA
Statistics
Matches: 184, Mismatches: 21, Indels: 36
0.76 0.09 0.15
Matches are distributed among these distances:
42 4 0.02
43 10 0.05
45 6 0.03
46 89 0.48
47 56 0.30
48 6 0.03
50 9 0.05
51 4 0.02
ACGTcount: A:0.21, C:0.20, G:0.29, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:32506036 original size:93 final size:93
Alignment explanation
Indices: 32505877--32506141 Score: 476
Period size: 93 Copynumber: 2.8 Consensus size: 93
32505867 GGATGGTTGA
32505877 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
32505942 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* *
32505970 GCATCCGAACTCGTTGTGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCTGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
32506035 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* * *
32506063 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
*
32506128 TGAGTCTGAGTTCG
66 TGAGTCCGAGTTCG
32506142 CTTATGGGCG
Statistics
Matches: 164, Mismatches: 8, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 164 1.00
ACGTcount: A:0.21, C:0.20, G:0.29, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:32511518 original size:40 final size:40
Alignment explanation
Indices: 32511420--32511589 Score: 207
Period size: 40 Copynumber: 4.3 Consensus size: 40
32511410 TCCTCGTTCA
* * *
32511420 AATGCCTTCGGGACATAGCCCAGATTTAGTAACTCACAC-
1 AATGCCTTCGGGACATAACCCAGATTTAATAACTCGCACG
*
32511459 AATGCCTTCGGGACATAACCCAGATTTAACAACTCGCACG
1 AATGCCTTCGGGACATAACCCAGATTTAATAACTCGCACG
* * * *
32511499 AATGCCTTCGGGGCTTAACCCGGCTTTAATAACTCGCACG
1 AATGCCTTCGGGACATAACCCAGATTTAATAACTCGCACG
* * * * *
32511539 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACATAACCCAGATTTAATAACTCGCACG
*
32511579 AAGGCCTTCGG
1 AATGCCTTCGG
32511590 ATCTTAGTCC
Statistics
Matches: 115, Mismatches: 15, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
39 35 0.30
40 80 0.70
ACGTcount: A:0.27, C:0.29, G:0.21, T:0.24
Consensus pattern (40 bp):
AATGCCTTCGGGACATAACCCAGATTTAATAACTCGCACG
Found at i:32514406 original size:23 final size:25
Alignment explanation
Indices: 32514380--32514436 Score: 66
Period size: 27 Copynumber: 2.3 Consensus size: 25
32514370 ATAATAATGA
32514380 ATTGATATTT-TT-TTA-AGTAGTTT
1 ATTGATATTTATTATTATA-TAGTTT
32514403 ATTGATATATTTATTATTATATAGTTT
1 ATTG--ATATTTATTATTATATAGTTT
32514430 ATTGATA
1 ATTGATA
32514437 AAATAAAATA
Statistics
Matches: 29, Mismatches: 0, Indels: 8
0.78 0.00 0.22
Matches are distributed among these distances:
23 4 0.14
25 9 0.31
26 2 0.07
27 13 0.45
28 1 0.03
ACGTcount: A:0.32, C:0.00, G:0.11, T:0.58
Consensus pattern (25 bp):
ATTGATATTTATTATTATATAGTTT
Found at i:32523748 original size:14 final size:14
Alignment explanation
Indices: 32523721--32523761 Score: 50
Period size: 13 Copynumber: 3.0 Consensus size: 14
32523711 ATAATTATAT
*
32523721 ATTTATATATTAAA
1 ATTTATATTTTAAA
32523735 ATTT-TA-TTTATAA
1 ATTTATATTTTA-AA
32523748 ATTTATATTTTAAA
1 ATTTATATTTTAAA
32523762 TATAAAACAT
Statistics
Matches: 23, Mismatches: 1, Indels: 6
0.77 0.03 0.20
Matches are distributed among these distances:
12 3 0.13
13 8 0.35
14 8 0.35
15 4 0.17
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (14 bp):
ATTTATATTTTAAA
Found at i:32523949 original size:45 final size:40
Alignment explanation
Indices: 32523923--32524016 Score: 108
Period size: 35 Copynumber: 2.5 Consensus size: 40
32523913 TATTGTTAAC
* *
32523923 ATTATTAATTTATTCAACTACTATTGCAATTAATATAATAA
1 ATTATCAATTTATTCAA-TACTATTGCAAGTAATATAATAA
*
32523964 ATTATCAATTTATTCAATACTATT--AA-TAATCTAAT--
1 ATTATCAATTTATTCAATACTATTGCAAGTAATATAATAA
*
32523999 ATTATAAATTTATTCAAT
1 ATTATCAATTTATTCAAT
32524017 TAGCATTATA
Statistics
Matches: 50, Mismatches: 3, Indels: 6
0.85 0.05 0.10
Matches are distributed among these distances:
35 17 0.34
37 8 0.16
38 2 0.04
40 7 0.14
41 16 0.32
ACGTcount: A:0.44, C:0.10, G:0.01, T:0.46
Consensus pattern (40 bp):
ATTATCAATTTATTCAATACTATTGCAAGTAATATAATAA
Found at i:32525174 original size:13 final size:13
Alignment explanation
Indices: 32525156--32525208 Score: 56
Period size: 13 Copynumber: 4.2 Consensus size: 13
32525146 AAGTGAGATA
32525156 AAATAATTAAAAT
1 AAATAATTAAAAT
*
32525169 AAATAACTAAAAT
1 AAATAATTAAAAT
32525182 AAAATAA-T-AAAT
1 -AAATAATTAAAAT
* *
32525194 AAAAAATTAGAAT
1 AAATAATTAAAAT
32525207 AA
1 AA
32525209 TAAGGAAACA
Statistics
Matches: 34, Mismatches: 3, Indels: 6
0.79 0.07 0.14
Matches are distributed among these distances:
11 5 0.15
12 5 0.15
13 18 0.53
14 6 0.18
ACGTcount: A:0.72, C:0.02, G:0.02, T:0.25
Consensus pattern (13 bp):
AAATAATTAAAAT
Found at i:32525198 original size:18 final size:18
Alignment explanation
Indices: 32525163--32525197 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
32525153 ATAAAATAAT
*
32525163 TAAAATAAATAACTAAAA
1 TAAAATAAATAAATAAAA
32525181 TAAAAT-AATAAATAAAA
1 TAAAATAAATAAATAAAA
32525198 AATTAGAATA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 10 0.62
18 6 0.38
ACGTcount: A:0.74, C:0.03, G:0.00, T:0.23
Consensus pattern (18 bp):
TAAAATAAATAAATAAAA
Found at i:32527626 original size:27 final size:26
Alignment explanation
Indices: 32527604--32527656 Score: 97
Period size: 27 Copynumber: 2.0 Consensus size: 26
32527594 GTTTTTGGAT
32527604 ATTTCATCTTCTTAAAACATTTTATCC
1 ATTTCATCTTCTTAAAACATTTTAT-C
32527631 ATTTCATCTTCTTAAAACATTTTATC
1 ATTTCATCTTCTTAAAACATTTTATC
32527657 TTATAAAAAT
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
26 1 0.04
27 25 0.96
ACGTcount: A:0.30, C:0.21, G:0.00, T:0.49
Consensus pattern (26 bp):
ATTTCATCTTCTTAAAACATTTTATC
Found at i:32531054 original size:43 final size:47
Alignment explanation
Indices: 32530990--32531114 Score: 132
Period size: 51 Copynumber: 2.7 Consensus size: 47
32530980 GGAGTCTGAA
* *
32530990 CTCGTTGAGTGGTCCGGGTTCATTATGGATGC-A-A-G-CATCCAAG
1 CTCGTTGAGAGGTCCGAGTTCATTATGGATGCGATATGACATCCAAG
* *
32531033 CTCGTTGAGAGGTCCGAGTTCATAATGGATGCGATTCATGTAACATCCGAG
1 CTCGTTGAGAGGTCCGAGTTCATTATGGATGCGA-T-ATG--ACATCCAAG
* *
32531084 CTCGTTGAGAGGTCTGAGTTTATTATGGATG
1 CTCGTTGAGAGGTCCGAGTTCATTATGGATG
32531115 TGTTACATGT
Statistics
Matches: 67, Mismatches: 7, Indels: 8
0.82 0.09 0.10
Matches are distributed among these distances:
43 29 0.43
44 1 0.01
47 1 0.01
48 1 0.01
51 35 0.52
ACGTcount: A:0.22, C:0.18, G:0.30, T:0.30
Consensus pattern (47 bp):
CTCGTTGAGAGGTCCGAGTTCATTATGGATGCGATATGACATCCAAG
Found at i:32535100 original size:20 final size:20
Alignment explanation
Indices: 32535075--32535117 Score: 86
Period size: 20 Copynumber: 2.1 Consensus size: 20
32535065 CATTCCTCTA
32535075 GGAATTTCGCAAATGGTCCT
1 GGAATTTCGCAAATGGTCCT
32535095 GGAATTTCGCAAATGGTCCT
1 GGAATTTCGCAAATGGTCCT
32535115 GGA
1 GGA
32535118 CATTGTTCAC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.26, C:0.19, G:0.28, T:0.28
Consensus pattern (20 bp):
GGAATTTCGCAAATGGTCCT
Found at i:32535524 original size:43 final size:43
Alignment explanation
Indices: 32535463--32535545 Score: 148
Period size: 43 Copynumber: 1.9 Consensus size: 43
32535453 GAAGTCAAGA
32535463 GACTCTAAAATACTGTCAGACACAACACGTTCAACTCTAAAGG
1 GACTCTAAAATACTGTCAGACACAACACGTTCAACTCTAAAGG
**
32535506 GACTCTAAAATACTGTCAGACACAAGGCGTTCAACTCTAA
1 GACTCTAAAATACTGTCAGACACAACACGTTCAACTCTAA
32535546 CTTTTGAGAT
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
43 38 1.00
ACGTcount: A:0.39, C:0.25, G:0.14, T:0.22
Consensus pattern (43 bp):
GACTCTAAAATACTGTCAGACACAACACGTTCAACTCTAAAGG
Found at i:32542494 original size:15 final size:15
Alignment explanation
Indices: 32542474--32542511 Score: 53
Period size: 15 Copynumber: 2.6 Consensus size: 15
32542464 GAAATGAGAA
32542474 AAATTAA-AAGATAAT
1 AAATTAATAAG-TAAT
32542489 AAATTAATAAGTAAT
1 AAATTAATAAGTAAT
32542504 AAA-TAATA
1 AAATTAATA
32542512 TCATTTTATA
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
14 5 0.23
15 14 0.64
16 3 0.14
ACGTcount: A:0.66, C:0.00, G:0.05, T:0.29
Consensus pattern (15 bp):
AAATTAATAAGTAAT
Found at i:32548625 original size:43 final size:44
Alignment explanation
Indices: 32548568--32548651 Score: 116
Period size: 43 Copynumber: 1.9 Consensus size: 44
32548558 ACTCAATCAC
* ** * *
32548568 ATGCATCGTATCCATTCTGAACTTGGACCACTCAACGAGCTAGG
1 ATGCATCGCATCCATAATGAACTCGGACCACTCAACAAGCTAGG
32548612 ATGC-TCGCATCCATAATGAACTCGGACCACTCAACAAGCT
1 ATGCATCGCATCCATAATGAACTCGGACCACTCAACAAGCT
32548652 CGAATGCCAC
Statistics
Matches: 35, Mismatches: 5, Indels: 1
0.85 0.12 0.02
Matches are distributed among these distances:
43 31 0.89
44 4 0.11
ACGTcount: A:0.30, C:0.30, G:0.18, T:0.23
Consensus pattern (44 bp):
ATGCATCGCATCCATAATGAACTCGGACCACTCAACAAGCTAGG
Found at i:32562827 original size:21 final size:22
Alignment explanation
Indices: 32562785--32562832 Score: 55
Period size: 21 Copynumber: 2.2 Consensus size: 22
32562775 ATGGTAAAAT
*
32562785 TAAAATATTTTATTATTGTATA
1 TAAAATATTTTATAATTGTATA
*
32562807 -AAAATCTTTTATAAATT-TATA
1 TAAAATATTTTAT-AATTGTATA
32562828 TAAAA
1 TAAAA
32562833 ATAATTTTTT
Statistics
Matches: 22, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
21 15 0.68
22 7 0.32
ACGTcount: A:0.48, C:0.02, G:0.02, T:0.48
Consensus pattern (22 bp):
TAAAATATTTTATAATTGTATA
Found at i:32564300 original size:18 final size:18
Alignment explanation
Indices: 32564273--32564312 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
32564263 AAAATTACTT
* *
32564273 TTTTTTAAAATATAATTA
1 TTTTTCAAAAAATAATTA
*
32564291 TTTTTCAAAAAATTATTA
1 TTTTTCAAAAAATAATTA
32564309 TTTT
1 TTTT
32564313 GTTTCAATTT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.40, C:0.03, G:0.00, T:0.57
Consensus pattern (18 bp):
TTTTTCAAAAAATAATTA
Found at i:32564349 original size:14 final size:15
Alignment explanation
Indices: 32564327--32564365 Score: 55
Period size: 14 Copynumber: 2.7 Consensus size: 15
32564317 CAATTTATAT
32564327 ATATATATTTTAA-AA
1 ATAT-TATTTTAAGAA
32564342 ATATTATTTTAAGAA
1 ATATTATTTTAAGAA
32564357 A-ATTATTTT
1 ATATTATTTT
32564366 CCACTCATAT
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
14 16 0.70
15 7 0.30
ACGTcount: A:0.46, C:0.00, G:0.03, T:0.51
Consensus pattern (15 bp):
ATATTATTTTAAGAA
Found at i:32572392 original size:28 final size:27
Alignment explanation
Indices: 32572355--32572419 Score: 121
Period size: 28 Copynumber: 2.4 Consensus size: 27
32572345 ATTTATTAGA
32572355 ATGTAAGATTTATGTTTGGTTGATGAG
1 ATGTAAGATTTATGTTTGGTTGATGAG
32572382 ATGTTAAGATTTATGTTTGGTTGATGAG
1 ATG-TAAGATTTATGTTTGGTTGATGAG
32572410 ATGTAAGATT
1 ATGTAAGATT
32572420 ATTTAGAAAT
Statistics
Matches: 37, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
27 10 0.27
28 27 0.73
ACGTcount: A:0.28, C:0.00, G:0.28, T:0.45
Consensus pattern (27 bp):
ATGTAAGATTTATGTTTGGTTGATGAG
Found at i:32574843 original size:48 final size:47
Alignment explanation
Indices: 32574716--32574884 Score: 154
Period size: 48 Copynumber: 3.6 Consensus size: 47
32574706 TATCAGAGCT
* * *
32574716 AGTGTAAGAC-ATGTCTAGGACAT-GCATCGGCTAC-A-AGATGTGTT
1 AGTGTAAGACTATGTCTAGGACATGGCATCTGC-ACGATAGAGGTGTC
*
32574760 AGTGTAAGACTATGTCCAGGACATGGCAT-TGGCACGTATAGAGGTGTC
1 AGTGTAAGACTATGTCTAGGACATGGCATCT-GCACG-ATAGAGGTGTC
* * *
32574808 AGTGTAAGACTATGTCTGGGACATGGCATCTGCACGA-ATGTGAGAG-C
1 AGTGTAAGACTATGTCTAGGACATGGCATCTGCACGATA-GAG-GTGTC
* *
32574855 TAGTGTAAGACCATGTCTGGGACATGGCAT
1 -AGTGTAAGACTATGTCTAGGACATGGCAT
32574885 TGACTTGATG
Statistics
Matches: 106, Mismatches: 9, Indels: 16
0.81 0.07 0.12
Matches are distributed among these distances:
44 10 0.09
45 14 0.13
46 7 0.07
47 5 0.05
48 69 0.65
49 1 0.01
ACGTcount: A:0.28, C:0.17, G:0.30, T:0.25
Consensus pattern (47 bp):
AGTGTAAGACTATGTCTAGGACATGGCATCTGCACGATAGAGGTGTC
Found at i:32574926 original size:143 final size:138
Alignment explanation
Indices: 32574670--32574936 Score: 302
Period size: 143 Copynumber: 1.9 Consensus size: 138
32574660 TTTGTGTGCT
*
32574670 AGTGTAAGATATGTCTGGGACATGCACCGGCCACATTATCAGAGCTAGTGTAAGACATGTCTAGG
1 AGTGTAAGATATGTCTGGGACATGCACCGGCCACAATATCAGAGCTAGTGTAAGACATGTCTAGG
* * ** * *
32574735 ACATGCATCGGCTACAAGATGTGTTAGTGTAAGACTATGTCCAGGACATGGCATTGGCACGTATA
66 ACATGCATCGACTACAAGATGAGCCAGTGCAAGACTATGTCCAGGACATAGCATTGGCACGTATA
32574800 GAGGTGTC
131 GAGGTGTC
* * * *
32574808 AGTGTAAGACTATGTCTGGGACATGGCATCTG-CACGAATGTGAGAGCTAGTGTAAGACCATGTC
1 AGTGTAAGA-TATGTCTGGGACAT-GCACCGGCCAC-AATATCAGAGCTAGTGTAAGA-CATGTC
* * ** * ***
32574872 TGGGACATGGCATTGACTTGATGGATGAGCCAGTGCAAGACTATGTTTGGGACATAGCATTGGCA
62 TAGGACAT-GCATCGACTACA-AGATGAGCCAGTGCAAGACTATGTCCAGGACATAGCATTGGCA
32574937 TTATACCCTA
Statistics
Matches: 104, Mismatches: 19, Indels: 7
0.80 0.15 0.05
Matches are distributed among these distances:
138 9 0.09
139 17 0.16
140 23 0.22
141 13 0.12
142 8 0.08
143 34 0.33
ACGTcount: A:0.28, C:0.17, G:0.30, T:0.25
Consensus pattern (138 bp):
AGTGTAAGATATGTCTGGGACATGCACCGGCCACAATATCAGAGCTAGTGTAAGACATGTCTAGG
ACATGCATCGACTACAAGATGAGCCAGTGCAAGACTATGTCCAGGACATAGCATTGGCACGTATA
GAGGTGTC
Found at i:32574932 original size:47 final size:47
Alignment explanation
Indices: 32574760--32574933 Score: 167
Period size: 48 Copynumber: 3.7 Consensus size: 47
32574750 AAGATGTGTT
** * * * *
32574760 AGTGTAAGACTATGTCCAGGACATGGCATTGGCACGTAT-AGAGGTGTC
1 AGTGTAAGACTATGTCTGGGACATGGCATT-GCACGAATGTGA-GAGCC
*
32574808 AGTGTAAGACTATGTCTGGGACATGGCATCTGCACGAATGTGAGAGCT
1 AGTGTAAGACTATGTCTGGGACATGGCAT-TGCACGAATGTGAGAGCC
*
32574856 AGTGTAAGACCATGTCTGGGACATGGCATTG-ACTTG-ATG-GATGAGCC
1 AGTGTAAGACTATGTCTGGGACATGGCATTGCAC--GAATGTGA-GAGCC
* * *
32574903 AGTGCAAGACTATGTTTGGGACATAGCATTG
1 AGTGTAAGACTATGTCTGGGACATGGCATTG
32574934 GCATTATACC
Statistics
Matches: 108, Mismatches: 13, Indels: 11
0.82 0.10 0.08
Matches are distributed among these distances:
46 4 0.04
47 36 0.33
48 65 0.60
49 3 0.03
ACGTcount: A:0.27, C:0.16, G:0.31, T:0.26
Consensus pattern (47 bp):
AGTGTAAGACTATGTCTGGGACATGGCATTGCACGAATGTGAGAGCC
Found at i:32574980 original size:60 final size:60
Alignment explanation
Indices: 32574887--32575006 Score: 240
Period size: 60 Copynumber: 2.0 Consensus size: 60
32574877 CATGGCATTG
32574887 ACTTGATGGATGAGCCAGTGCAAGACTATGTTTGGGACATAGCATTGGCATTATACCCTA
1 ACTTGATGGATGAGCCAGTGCAAGACTATGTTTGGGACATAGCATTGGCATTATACCCTA
32574947 ACTTGATGGATGAGCCAGTGCAAGACTATGTTTGGGACATAGCATTGGCATTATACCCTA
1 ACTTGATGGATGAGCCAGTGCAAGACTATGTTTGGGACATAGCATTGGCATTATACCCTA
32575007 TGTTTGAGGC
Statistics
Matches: 60, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
60 60 1.00
ACGTcount: A:0.28, C:0.18, G:0.25, T:0.28
Consensus pattern (60 bp):
ACTTGATGGATGAGCCAGTGCAAGACTATGTTTGGGACATAGCATTGGCATTATACCCTA
Found at i:32594467 original size:34 final size:34
Alignment explanation
Indices: 32594424--32594507 Score: 107
Period size: 34 Copynumber: 2.5 Consensus size: 34
32594414 TCTATCGTAT
32594424 TGATATGTTATAAGCATATCTACTGCTACTGTAC
1 TGATATGTTATAAGCATATCTACTGCTACTGTAC
* * * * * *
32594458 TGATCTGTTATTAGCATGTTTATTGCTACTGTAT
1 TGATATGTTATAAGCATATCTACTGCTACTGTAC
32594492 TGATATG-TATAAGCAT
1 TGATATGTTATAAGCAT
32594508 GCCATATTGC
Statistics
Matches: 42, Mismatches: 8, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
33 8 0.19
34 34 0.81
ACGTcount: A:0.27, C:0.13, G:0.17, T:0.43
Consensus pattern (34 bp):
TGATATGTTATAAGCATATCTACTGCTACTGTAC
Found at i:32594641 original size:45 final size:45
Alignment explanation
Indices: 32594578--32594734 Score: 226
Period size: 45 Copynumber: 3.5 Consensus size: 45
32594568 GTAGCTTGTT
32594578 TGCACCGATTAGTGGTTTATCCATATCGTATTAGCATCTTTTATC
1 TGCACCGATTAGTGGTTTATCCATATCGTATTAGCATCTTTTATC
* * * * *
32594623 TGCACCGATTACTAGTTTATCCACACCGTATTAGCAACTTTTATC
1 TGCACCGATTAGTGGTTTATCCATATCGTATTAGCATCTTTTATC
** *
32594668 TGCATTGATTAGTGGTTTATCCATATCGTATTAGCAGT-TTTTATT
1 TGCACCGATTAGTGGTTTATCCATATCGTATTAGCA-TCTTTTATC
32594713 TGCACCGATTAGTGGTTTATCC
1 TGCACCGATTAGTGGTTTATCC
32594735 CCACCGTATT
Statistics
Matches: 96, Mismatches: 15, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
45 96 1.00
ACGTcount: A:0.23, C:0.20, G:0.16, T:0.41
Consensus pattern (45 bp):
TGCACCGATTAGTGGTTTATCCATATCGTATTAGCATCTTTTATC
Found at i:32594666 original size:24 final size:24
Alignment explanation
Indices: 32594593--32594667 Score: 66
Period size: 24 Copynumber: 3.2 Consensus size: 24
32594583 CGATTAGTGG
* * *
32594593 TTTATCCATATCGTATTAGCATCT
1 TTTATCCACACCGTATTAGCAACT
** * *
32594617 TTTATCTGCACCG-ATTA-CTA-G
1 TTTATCCACACCGTATTAGCAACT
32594638 TTTATCCACACCGTATTAGCAACT
1 TTTATCCACACCGTATTAGCAACT
32594662 TTTATC
1 TTTATC
32594668 TGCATTGATT
Statistics
Matches: 37, Mismatches: 11, Indels: 6
0.69 0.20 0.11
Matches are distributed among these distances:
21 11 0.30
22 5 0.14
23 6 0.16
24 15 0.41
ACGTcount: A:0.25, C:0.24, G:0.09, T:0.41
Consensus pattern (24 bp):
TTTATCCACACCGTATTAGCAACT
Found at i:32600405 original size:17 final size:17
Alignment explanation
Indices: 32600383--32600423 Score: 73
Period size: 17 Copynumber: 2.4 Consensus size: 17
32600373 AATAAACAAT
32600383 GTAAGCTATAAAGCTTA
1 GTAAGCTATAAAGCTTA
*
32600400 GTAAGCTCTAAAGCTTA
1 GTAAGCTATAAAGCTTA
32600417 GTAAGCT
1 GTAAGCT
32600424 TGTATGAAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
17 23 1.00
ACGTcount: A:0.37, C:0.15, G:0.20, T:0.29
Consensus pattern (17 bp):
GTAAGCTATAAAGCTTA
Found at i:32628628 original size:20 final size:20
Alignment explanation
Indices: 32628603--32628644 Score: 84
Period size: 20 Copynumber: 2.1 Consensus size: 20
32628593 AAAAGCTAAA
32628603 CTGAAATTAAAAGTAGAATT
1 CTGAAATTAAAAGTAGAATT
32628623 CTGAAATTAAAAGTAGAATT
1 CTGAAATTAAAAGTAGAATT
32628643 CT
1 CT
32628645 AAACTAAGTA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.48, C:0.07, G:0.14, T:0.31
Consensus pattern (20 bp):
CTGAAATTAAAAGTAGAATT
Found at i:32636366 original size:25 final size:24
Alignment explanation
Indices: 32636331--32636379 Score: 80
Period size: 25 Copynumber: 2.0 Consensus size: 24
32636321 ATGAATATTG
32636331 TCTAAGGCATTATTATCGGCATTC
1 TCTAAGGCATTATTATCGGCATTC
*
32636355 NTCTAAGTCATTATTATCGGCATTC
1 -TCTAAGGCATTATTATCGGCATTC
32636380 CCATCTAATA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.24, C:0.20, G:0.14, T:0.39
Consensus pattern (24 bp):
TCTAAGGCATTATTATCGGCATTC
Found at i:32638870 original size:18 final size:18
Alignment explanation
Indices: 32638847--32638890 Score: 81
Period size: 18 Copynumber: 2.5 Consensus size: 18
32638837 AATAACAAGG
32638847 TAGAGTTAATAATAATCT
1 TAGAGTTAATAATAATCT
32638865 TAGAGTTAATAATAATCT
1 TAGAGTTAATAATAATCT
32638883 TAGA-TTAA
1 TAGAGTTAA
32638891 GTCCACGAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
17 4 0.15
18 22 0.85
ACGTcount: A:0.45, C:0.05, G:0.11, T:0.39
Consensus pattern (18 bp):
TAGAGTTAATAATAATCT
Found at i:32641855 original size:51 final size:51
Alignment explanation
Indices: 32641795--32642000 Score: 342
Period size: 51 Copynumber: 4.0 Consensus size: 51
32641785 TTCCGGTTGA
* *
32641795 ACTTTGTGAATATAATAGCTTT-GAGCACAAGCGTGGTACTATGTGAAGGCC
1 ACTTTGTGAATAAAATAGCTTTGGA-CACAAGTGTGGTACTATGTGAAGGCC
*
32641846 ACTTTGTGAATATAATAGCTTTGGACACAAGTGTGGTACTATGTGAAGGCC
1 ACTTTGTGAATAAAATAGCTTTGGACACAAGTGTGGTACTATGTGAAGGCC
*
32641897 ACTTTGTGAATAAAATAGCTTTGGACACAAGTGTGGTCCTATGTGAAGGCC
1 ACTTTGTGAATAAAATAGCTTTGGACACAAGTGTGGTACTATGTGAAGGCC
* *
32641948 ACTTTGTGAATAAAATAGCTTTGGATACAAGGGTGGTACTATGTGAAGGCC
1 ACTTTGTGAATAAAATAGCTTTGGACACAAGTGTGGTACTATGTGAAGGCC
32641999 AC
1 AC
32642001 CGTGTATCCG
Statistics
Matches: 148, Mismatches: 6, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
51 146 0.99
52 2 0.01
ACGTcount: A:0.30, C:0.15, G:0.26, T:0.30
Consensus pattern (51 bp):
ACTTTGTGAATAAAATAGCTTTGGACACAAGTGTGGTACTATGTGAAGGCC
Found at i:32644423 original size:56 final size:56
Alignment explanation
Indices: 32644256--32644448 Score: 260
Period size: 56 Copynumber: 3.4 Consensus size: 56
32644246 GACCATGGCA
* * *
32644256 TCGATATATGTGTGCGAGTAAGACCACGTTGAATACGTTAGCATCGATATGTGATA
1 TCGATATATGTGTGCGAGTAAGACCACGTTTAATACGTTGGCATCGATATGTGATT
* * * *
32644312 CCGATATATGTGTGCGAGTAAGACCATGTTTAATATGTTGGCATCGATATATGATT
1 TCGATATATGTGTGCGAGTAAGACCACGTTTAATACGTTGGCATCGATATGTGATT
* * *
32644368 TCAATATATGTGTGCGAGTAAGACCACGTTTAATGCATTGGCATCGATATGTGATT
1 TCGATATATGTGTGCGAGTAAGACCACGTTTAATACGTTGGCATCGATATGTGATT
* * * *
32644424 TTGATTTACGAGTGCGAGTAAGACC
1 TCGATATATGTGTGCGAGTAAGACC
32644449 CTGTCTGGGG
Statistics
Matches: 118, Mismatches: 19, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
56 118 1.00
ACGTcount: A:0.29, C:0.14, G:0.24, T:0.33
Consensus pattern (56 bp):
TCGATATATGTGTGCGAGTAAGACCACGTTTAATACGTTGGCATCGATATGTGATT
Found at i:32650663 original size:110 final size:110
Alignment explanation
Indices: 32650470--32650804 Score: 661
Period size: 110 Copynumber: 3.0 Consensus size: 110
32650460 TGAACAAATA
*
32650470 CATGGATGTTTTATTATAATACACATTATTTTACATTTTACTAATTTAACCTTTATAATATAATT
1 CATGGATGTTTTATTATAATACATATTATTTTACATTTTACTAATTTAACCTTTATAATATAATT
32650535 AGAAAATCATATAATGGTTGTTTTTTACTGTCCATCATATTATAT
66 AGAAAATCATATAATGGTTGTTTTTTACTGTCCATCATATTATAT
32650580 CATGGATGTTTTATTATAATACATATTATTTTACATTTTACTAATTTAACCTTTATAATATAATT
1 CATGGATGTTTTATTATAATACATATTATTTTACATTTTACTAATTTAACCTTTATAATATAATT
32650645 AGAAAATCATATAATGGTTGTTTTTTACTGTCCATCATATTATAT
66 AGAAAATCATATAATGGTTGTTTTTTACTGTCCATCATATTATAT
32650690 CATGGATGTTTTATTATAATACATATTATTTTACATTTTACTAATTTAACCTTTATAATATAATT
1 CATGGATGTTTTATTATAATACATATTATTTTACATTTTACTAATTTAACCTTTATAATATAATT
32650755 AGAAAATCATATAATGGTTGTTTTTTACTGTCCATCATATTATAT
66 AGAAAATCATATAATGGTTGTTTTTTACTGTCCATCATATTATAT
32650800 CATGG
1 CATGG
32650805 GCAAGTTTCA
Statistics
Matches: 224, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
110 224 1.00
ACGTcount: A:0.34, C:0.10, G:0.08, T:0.47
Consensus pattern (110 bp):
CATGGATGTTTTATTATAATACATATTATTTTACATTTTACTAATTTAACCTTTATAATATAATT
AGAAAATCATATAATGGTTGTTTTTTACTGTCCATCATATTATAT
Found at i:32652820 original size:28 final size:27
Alignment explanation
Indices: 32652758--32652909 Score: 223
Period size: 27 Copynumber: 5.6 Consensus size: 27
32652748 TAAATTGTGC
* *
32652758 AGCACTAAGTGTGCGAATTGAATATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
*
32652785 AGCACTAAGTGTGCGAGTTTTACTATGT
1 AGCACTAAGTGTGCGAG-TTGACTATGT
32652813 AGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
*
32652840 AGCACTAAGTGTGCGAGTATGATTATGT
1 AGCACTAAGTGTGCGAGT-TGACTATGT
* *
32652868 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGTTGACTATGT
*
32652895 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
32652910 GACTTAATAT
Statistics
Matches: 116, Mismatches: 7, Indels: 4
0.91 0.06 0.03
Matches are distributed among these distances:
27 65 0.56
28 51 0.44
ACGTcount: A:0.28, C:0.13, G:0.28, T:0.31
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGTTGACTATGT
Found at i:32652823 original size:55 final size:55
Alignment explanation
Indices: 32652758--32652909 Score: 232
Period size: 55 Copynumber: 2.8 Consensus size: 55
32652748 TAAATTGTGC
* * *
32652758 AGCACTAAGTGTGCGAATTGAATATGTAGCACTAAGTGTGCGAGTTTTACTATGT
1 AGCACTAAGTGTGCGAGTTGAATATGTAGCACTAAGTGTGCGAGTATGACTATGT
* *
32652813 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTATGATTATGT
1 AGCACTAAGTGTGCGAGTTGAATATGTAGCACTAAGTGTGCGAGTATGACTATGT
* * *
32652868 AGCACTAAGTGTGCGAGTTGATTATATAGCACTGAGTGTGCG
1 AGCACTAAGTGTGCGAGTTGAATATGTAGCACTAAGTGTGCG
32652910 GACTTAATAT
Statistics
Matches: 89, Mismatches: 8, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
55 89 1.00
ACGTcount: A:0.28, C:0.13, G:0.28, T:0.31
Consensus pattern (55 bp):
AGCACTAAGTGTGCGAGTTGAATATGTAGCACTAAGTGTGCGAGTATGACTATGT
Found at i:32655085 original size:17 final size:17
Alignment explanation
Indices: 32655063--32655096 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
32655053 AGACTTAACC
*
32655063 CTTTATCACCATTTCAA
1 CTTTATCACCAGTTCAA
32655080 CTTTATCACCAGTTCAA
1 CTTTATCACCAGTTCAA
32655097 GCATGTATCA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.29, C:0.29, G:0.03, T:0.38
Consensus pattern (17 bp):
CTTTATCACCAGTTCAA
Found at i:32656346 original size:74 final size:74
Alignment explanation
Indices: 32656222--32656366 Score: 191
Period size: 74 Copynumber: 2.0 Consensus size: 74
32656212 TGTTACACAG
* * * *
32656222 GTCGTGTGCGATGCGTAGGGGTGAAGGTGCAAGGGACACACGGCCATGTGACCAGCCCCTGTGTG
1 GTCGTGTGCGATGCGTAAGGGTGAAGGTGCAAGGGACACACAGCCATGTGACAAGCCCCTGTGTA
32656287 AAGCCCTAA
66 AAGCCCTAA
* * * * * * *
32656296 GTCGTGTGTGATGTGTAAGGTTGAAGGTGCAAGGGCCACACAGTCGTGTGACAAGCCCGTGTGTA
1 GTCGTGTGCGATGCGTAAGGGTGAAGGTGCAAGGGACACACAGCCATGTGACAAGCCCCTGTGTA
32656361 AAGCCC
66 AAGCCC
32656367 CTGGCTGTGT
Statistics
Matches: 60, Mismatches: 11, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
74 60 1.00
ACGTcount: A:0.22, C:0.22, G:0.36, T:0.20
Consensus pattern (74 bp):
GTCGTGTGCGATGCGTAAGGGTGAAGGTGCAAGGGACACACAGCCATGTGACAAGCCCCTGTGTA
AAGCCCTAA
Found at i:32659795 original size:13 final size:13
Alignment explanation
Indices: 32659777--32659801 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
32659767 ACTCATCCAA
32659777 CATCCAGCCAAAG
1 CATCCAGCCAAAG
32659790 CATCCAGCCAAA
1 CATCCAGCCAAA
32659802 TATCTACAAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.40, G:0.12, T:0.08
Consensus pattern (13 bp):
CATCCAGCCAAAG
Found at i:32663302 original size:29 final size:29
Alignment explanation
Indices: 32663270--32663328 Score: 118
Period size: 29 Copynumber: 2.0 Consensus size: 29
32663260 TATGAAAATT
32663270 TTTGTGACTAACATGTTTGATTGAATGCA
1 TTTGTGACTAACATGTTTGATTGAATGCA
32663299 TTTGTGACTAACATGTTTGATTGAATGCA
1 TTTGTGACTAACATGTTTGATTGAATGCA
32663328 T
1 T
32663329 GTGTTTCGAC
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.27, C:0.10, G:0.20, T:0.42
Consensus pattern (29 bp):
TTTGTGACTAACATGTTTGATTGAATGCA
Found at i:32666465 original size:49 final size:49
Alignment explanation
Indices: 32666359--32666470 Score: 127
Period size: 49 Copynumber: 2.3 Consensus size: 49
32666349 TTGTTGTGTC
** * * *
32666359 CCAGTGTAAGACCTGTCTGGGACATGGCATCGACACTGATAGATGAGAG
1 CCAGTGTAAGACCTACCTGGGACACGGCATCGACACTAATAGATGAAAG
* * *
32666408 CCAATGTAAGACCTACCTGGGACACGGCATCGGC-CTCAATATATGAAAG
1 CCAGTGTAAGACCTACCTGGGACACGGCATCGACACT-AATAGATGAAAG
*
32666457 TCAGTGTAAGACCT
1 CCAGTGTAAGACCT
32666471 GTCTAGAACA
Statistics
Matches: 52, Mismatches: 10, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
48 2 0.04
49 50 0.96
ACGTcount: A:0.30, C:0.23, G:0.26, T:0.21
Consensus pattern (49 bp):
CCAGTGTAAGACCTACCTGGGACACGGCATCGACACTAATAGATGAAAG
Found at i:32666469 original size:142 final size:142
Alignment explanation
Indices: 32666225--32666532 Score: 349
Period size: 142 Copynumber: 2.2 Consensus size: 142
32666215 TGAGAGCCAA
* * * * * **
32666225 TGTAAGACATGTCTGGGACAT-GCATCGGCATTGAGACGAGAGCTAGTGTAAGACATGTCTGGGA
1 TGTAAGACCTGTCTGGGACATGGCATCGACACTGAGACGAGAGCCAATGTAAGACATACCTGGGA
* * * * * * *
32666289 TATGCATCGGCCTTAAGATATACAAGCTAGTGTAAGACCTGTCTGGGACATGGCGTCAAC-TTGT
66 CAGGCATCGGCCTCAAGATATACAAGCTAGTGTAAGACCTGTCTAGAACATGGCATCAACTTTGA
32666353 TGTG-T-CCCAG
131 TGTGCTACCCAG
* *
32666363 TGTAAGACCTGTCTGGGACATGGCATCGACACTGATAGATGAGAGCCAATGTAAGACCTACCTGG
1 TGTAAGACCTGTCTGGGACATGGCATCGACACTG--AGACGAGAGCCAATGTAAGACATACCTGG
* *
32666428 GACACGGCATCGGCCTCAATATATGA-AAG-TCAGTGTAAGACCTGTCTAGAACATGGCATCGAC
64 GACA-GGCATCGGCCTCAAGATAT-ACAAGCT-AGTGTAAGACCTGTCTAGAACATGGCATCAAC
*
32666491 TTTGATGTGCTAGCCAG
126 TTTGATGTGCTACCCAG
32666508 TGTAAGACCATGTCTGGGACATGGC
1 TGTAAGACC-TGTCTGGGACATGGC
32666533 GTCGGCATCT
Statistics
Matches: 141, Mismatches: 19, Indels: 12
0.82 0.11 0.07
Matches are distributed among these distances:
138 20 0.14
139 10 0.07
141 27 0.19
142 47 0.33
143 8 0.06
144 1 0.01
145 13 0.09
146 15 0.11
ACGTcount: A:0.27, C:0.20, G:0.28, T:0.24
Consensus pattern (142 bp):
TGTAAGACCTGTCTGGGACATGGCATCGACACTGAGACGAGAGCCAATGTAAGACATACCTGGGA
CAGGCATCGGCCTCAAGATATACAAGCTAGTGTAAGACCTGTCTAGAACATGGCATCAACTTTGA
TGTGCTACCCAG
Found at i:32666486 original size:49 final size:49
Alignment explanation
Indices: 32666177--32666532 Score: 174
Period size: 46 Copynumber: 7.5 Consensus size: 49
32666167 TATGTGTTCT
* * * * *
32666177 AGTGTAAAACATGTCTGGGACAT-GCATCGGC-C-ACAT-TATGAGAGCC
1 AGTGTAAGACCTGTCTGGGACATGGCATCGACACTA-ATAGATGAAAGCC
* * * * * *
32666223 AATGTAAGACATGTCTGGGACAT-GCATCGGCA-T--TGAGACGAGAGCT
1 AGTGTAAGACCTGTCTGGGACATGGCATCGACACTAAT-AGATGAAAGCC
* * * * * *
32666269 AGTGTAAGACATGTCTGGGATAT-GCATCGGC-CTTA-AGATATACAAGCT
1 AGTGTAAGACCTGTCTGGGACATGGCATCGACACTAATAGAT-GA-AAGCC
* * ****
32666317 AGTGTAAGACCTGTCTGGGACATGGCGTC-A-ACT--T-GTTGTGTCCC
1 AGTGTAAGACCTGTCTGGGACATGGCATCGACACTAATAGATGAAAGCC
* *
32666361 AGTGTAAGACCTGTCTGGGACATGGCATCGACACTGATAGATGAGAGCC
1 AGTGTAAGACCTGTCTGGGACATGGCATCGACACTAATAGATGAAAGCC
* ** * * * *
32666410 AATGTAAGACCTACCTGGGACACGGCATCGGC-CTCAATATATGAAAGTC
1 AGTGTAAGACCTGTCTGGGACATGGCATCGACACT-AATAGATGAAAGCC
* * ** * **
32666459 AGTGTAAGACCTGTCTAGAACATGGCATCGACTTTGAT-G-TGCTAGCC
1 AGTGTAAGACCTGTCTGGGACATGGCATCGACACTAATAGATGAAAGCC
32666506 AGTGTAAGACCATGTCTGGGACATGGC
1 AGTGTAAGACC-TGTCTGGGACATGGC
32666533 GTCGGCATCT
Statistics
Matches: 240, Mismatches: 50, Indels: 38
0.73 0.15 0.12
Matches are distributed among these distances:
44 30 0.12
45 1 0.00
46 74 0.31
47 17 0.07
48 43 0.18
49 74 0.31
50 1 0.00
ACGTcount: A:0.28, C:0.21, G:0.28, T:0.24
Consensus pattern (49 bp):
AGTGTAAGACCTGTCTGGGACATGGCATCGACACTAATAGATGAAAGCC
Found at i:32671956 original size:18 final size:18
Alignment explanation
Indices: 32671942--32671977 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
32671932 GTACCAAATG
32671942 ACCAAATTTTACCAAAAA
1 ACCAAATTTTACCAAAAA
32671960 ACCAAATTTTACCAAAAA
1 ACCAAATTTTACCAAAAA
32671978 TAGTGTTCTC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.56, C:0.22, G:0.00, T:0.22
Consensus pattern (18 bp):
ACCAAATTTTACCAAAAA
Found at i:32686554 original size:29 final size:29
Alignment explanation
Indices: 32686512--32686570 Score: 109
Period size: 29 Copynumber: 2.0 Consensus size: 29
32686502 CCAAGAACAT
*
32686512 AGACAACGTGTATGTTGGAATGGATTGTA
1 AGACAACATGTATGTTGGAATGGATTGTA
32686541 AGACAACATGTATGTTGGAATGGATTGTA
1 AGACAACATGTATGTTGGAATGGATTGTA
32686570 A
1 A
32686571 CACCGCCTTA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.34, C:0.07, G:0.29, T:0.31
Consensus pattern (29 bp):
AGACAACATGTATGTTGGAATGGATTGTA
Found at i:32689614 original size:48 final size:48
Alignment explanation
Indices: 32689547--32689774 Score: 243
Period size: 48 Copynumber: 4.9 Consensus size: 48
32689537 AACATAGTAG
* * *
32689547 GATGCCAATCCCATATCCCAGATATGGTCTTACATGGGATCACATATC
1 GATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATC
* * * *
32689595 GATGCCAATGCCATGTCCCAAACATGGTCTTACGTGGGATCATAGATC
1 GATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATC
* * *
32689643 GATACCAATGCCATGTCCCAGACATGGTCTTACATGGCATCTCATATC
1 GATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATC
* * * ** *
32689691 GATGCCGAT---A-G-CCTAG-CTATGGTCTTACACGAAATTACATATC
1 GATGCCAATGCCATGTCCCAGAC-ATGGTCTTACATGGGATCACATATC
* *
32689734 GATGCCAAAGCCATGTCCTAGACATGGTCTTACATGGGATC
1 GATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATC
32689775 GTTCATAACC
Statistics
Matches: 145, Mismatches: 28, Indels: 14
0.78 0.15 0.07
Matches are distributed among these distances:
42 1 0.01
43 31 0.21
44 1 0.01
45 1 0.01
46 1 0.01
47 1 0.01
48 108 0.74
49 1 0.01
ACGTcount: A:0.28, C:0.26, G:0.20, T:0.26
Consensus pattern (48 bp):
GATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATC
Found at i:32702113 original size:19 final size:17
Alignment explanation
Indices: 32702089--32702133 Score: 54
Period size: 17 Copynumber: 2.5 Consensus size: 17
32702079 TGAAGAATTA
32702089 ATTATAAATATAACAGTTT
1 ATTATAAA-ATAA-AGTTT
*
32702108 ATTATAAAATAAATTTT
1 ATTATAAAATAAAGTTT
*
32702125 AATATAAAA
1 ATTATAAAA
32702134 AAGAAGTTAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
17 12 0.50
18 4 0.17
19 8 0.33
ACGTcount: A:0.56, C:0.02, G:0.02, T:0.40
Consensus pattern (17 bp):
ATTATAAAATAAAGTTT
Found at i:32708051 original size:33 final size:33
Alignment explanation
Indices: 32708009--32708089 Score: 99
Period size: 33 Copynumber: 2.5 Consensus size: 33
32707999 GGGAATGGAG
* * *
32708009 TACTACGGTGGATACGGGCCGGGGGTAGTGCTA
1 TACTGCGGTGGATACGGGCCGGGAGAAGTGCTA
* * *
32708042 TACTGCGGTGGATATGGGCCGGGAGAAGTGTTG
1 TACTGCGGTGGATACGGGCCGGGAGAAGTGCTA
*
32708075 TGCTGCGGTGGATAC
1 TACTGCGGTGGATAC
32708090 AACCCAAAGA
Statistics
Matches: 40, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
33 40 1.00
ACGTcount: A:0.17, C:0.16, G:0.43, T:0.23
Consensus pattern (33 bp):
TACTGCGGTGGATACGGGCCGGGAGAAGTGCTA
Found at i:32710100 original size:276 final size:276
Alignment explanation
Indices: 32709607--32710449 Score: 1686
Period size: 276 Copynumber: 3.1 Consensus size: 276
32709597 TCAGTCGTGC
32709607 TTTTAACCCAACTAAATGACTAAAATGATGAAATTTTACTTAAATCAGGCGACTGGCTGTTTTTT
1 TTTTAACCCAACTAAATGACTAAAATGATGAAATTTTACTTAAATCAGGCGACTGGCTGTTTTTT
32709672 AAAGCAATTTAATTCCCAAATTCCATTAGAAATAAATGTATAAGGTCGTATTCGGAAAAAAAAAT
66 AAAGCAATTTAATTCCCAAATTCCATTAGAAATAAATGTATAAGGTCGTATTCGGAAAAAAAAAT
32709737 ATAATAAACAATAAATTTACAATCCAAATCAATAATATATAAATAAACGCTGGCTTTTAAATAAA
131 ATAATAAACAATAAATTTACAATCCAAATCAATAATATATAAATAAACGCTGGCTTTTAAATAAA
32709802 ATTATTTTTTTATACAATATTAAAGACACGAGGTAAAAATAATACGAATTAAATTCATATCAAAT
196 ATTATTTTTTTATACAATATTAAAGACACGAGGTAAAAATAATACGAATTAAATTCATATCAAAT
32709867 AAGTCTCTGACAAGAG
261 AAGTCTCTGACAAGAG
32709883 TTTTAACCCAACTAAATGACTAAAATGATGAAATTTTACTTAAATCAGGCGACTGGCTGTTTTTT
1 TTTTAACCCAACTAAATGACTAAAATGATGAAATTTTACTTAAATCAGGCGACTGGCTGTTTTTT
32709948 AAAGCAATTTAATTCCCAAATTCCATTAGAAATAAATGTATAAGGTCGTATTCGGAAAAAAAAAT
66 AAAGCAATTTAATTCCCAAATTCCATTAGAAATAAATGTATAAGGTCGTATTCGGAAAAAAAAAT
32710013 ATAATAAACAATAAATTTACAATCCAAATCAATAATATATAAATAAACGCTGGCTTTTAAATAAA
131 ATAATAAACAATAAATTTACAATCCAAATCAATAATATATAAATAAACGCTGGCTTTTAAATAAA
32710078 ATTATTTTTTTATACAATATTAAAGACACGAGGTAAAAATAATACGAATTAAATTCATATCAAAT
196 ATTATTTTTTTATACAATATTAAAGACACGAGGTAAAAATAATACGAATTAAATTCATATCAAAT
32710143 AAGTCTCTGACAAGAG
261 AAGTCTCTGACAAGAG
32710159 TTTTAACCCAACTAAATGACTAAAATGATGAAATTTTACTTAAATCAGGCGACTGGCTGTTTTTT
1 TTTTAACCCAACTAAATGACTAAAATGATGAAATTTTACTTAAATCAGGCGACTGGCTGTTTTTT
32710224 AAAGCAATTTAATTCCCAAATTCCATTAGAAATAAATGTATAAGGTCGTATTCGGAAAAAAAAAT
66 AAAGCAATTTAATTCCCAAATTCCATTAGAAATAAATGTATAAGGTCGTATTCGGAAAAAAAAAT
32710289 ATAATAAACAATAAATTTACAATCCAAATCAATAATATATAAATAAACGCTGGCTTTTAAATAAA
131 ATAATAAACAATAAATTTACAATCCAAATCAATAATATATAAATAAACGCTGGCTTTTAAATAAA
32710354 ATTATTTTTTTATACAATATTAAAGACACGAGGTAAAAATAATACGAATTAAATTCATATCAAAT
196 ATTATTTTTTTATACAATATTAAAGACACGAGGTAAAAATAATACGAATTAAATTCATATCAAAT
32710419 AAGTCTCTGACAAGAG
261 AAGTCTCTGACAAGAG
32710435 TTTTAACCCAACTAA
1 TTTTAACCCAACTAA
32710450 TCAATAATAC
Statistics
Matches: 567, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
276 567 1.00
ACGTcount: A:0.45, C:0.13, G:0.10, T:0.32
Consensus pattern (276 bp):
TTTTAACCCAACTAAATGACTAAAATGATGAAATTTTACTTAAATCAGGCGACTGGCTGTTTTTT
AAAGCAATTTAATTCCCAAATTCCATTAGAAATAAATGTATAAGGTCGTATTCGGAAAAAAAAAT
ATAATAAACAATAAATTTACAATCCAAATCAATAATATATAAATAAACGCTGGCTTTTAAATAAA
ATTATTTTTTTATACAATATTAAAGACACGAGGTAAAAATAATACGAATTAAATTCATATCAAAT
AAGTCTCTGACAAGAG
Found at i:32712652 original size:21 final size:21
Alignment explanation
Indices: 32712616--32712718 Score: 65
Period size: 21 Copynumber: 4.9 Consensus size: 21
32712606 TTTAAGTACT
*
32712616 AAAATATATATAAATGTATATA
1 AAAATA-ATAAAAATGTATATA
*
32712638 TAAATAATAAAAATG-AT-T-
1 AAAATAATAAAAATGTATATA
*
32712656 AAAATAA-AAAGAAAGTATA-A
1 AAAATAATAAA-AATGTATATA
*
32712676 AAAATCAAATATAAAATATATATA
1 AAAAT--AATA-AAAATGTATATA
*
32712700 CAAAATAAT-TAAATGTATA
1 -AAAATAATAAAAATGTATA
32712719 AAATTTAGAA
Statistics
Matches: 63, Mismatches: 8, Indels: 21
0.68 0.09 0.23
Matches are distributed among these distances:
17 3 0.05
18 9 0.14
19 3 0.05
20 7 0.11
21 16 0.25
22 7 0.11
23 10 0.16
24 3 0.05
25 5 0.08
ACGTcount: A:0.64, C:0.02, G:0.05, T:0.29
Consensus pattern (21 bp):
AAAATAATAAAAATGTATATA
Found at i:32712975 original size:20 final size:19
Alignment explanation
Indices: 32712950--32713017 Score: 75
Period size: 19 Copynumber: 3.5 Consensus size: 19
32712940 GTAATTTATA
32712950 TTTTATATATTTTTCTATTT
1 TTTTATATATTTTT-TATTT
*
32712970 TTTTATATATTTAATTA-TT
1 TTTTATATATTT-TTTATTT
* **
32712989 TTTTATATATGTTTTAAAT
1 TTTTATATATTTTTTATTT
32713008 TTTTATATAT
1 TTTTATATAT
32713018 GATTTTGTAT
Statistics
Matches: 42, Mismatches: 4, Indels: 5
0.82 0.08 0.10
Matches are distributed among these distances:
18 3 0.07
19 24 0.57
20 14 0.33
21 1 0.02
ACGTcount: A:0.28, C:0.01, G:0.01, T:0.69
Consensus pattern (19 bp):
TTTTATATATTTTTTATTT
Found at i:32714402 original size:3 final size:3
Alignment explanation
Indices: 32714394--32714420 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
32714384 TGTTAAACAC
32714394 ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT
32714421 TTGGTGATAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
ATT
Found at i:32716779 original size:7 final size:7
Alignment explanation
Indices: 32716767--32716816 Score: 59
Period size: 7 Copynumber: 7.1 Consensus size: 7
32716757 AAAAGGCACG
32716767 AGAAAGA
1 AGAAAGA
32716774 AGAAAGA
1 AGAAAGA
32716781 AGAAAGA
1 AGAAAGA
32716788 AGAAA-A
1 AGAAAGA
*
32716794 ATTGAAACA
1 A--GAAAGA
32716803 AGAAAGA
1 AGAAAGA
32716810 A-AAAGA
1 AGAAAGA
32716816 A
1 A
32716817 AAAAAAACAG
Statistics
Matches: 39, Mismatches: 1, Indels: 7
0.83 0.02 0.15
Matches are distributed among these distances:
6 8 0.21
7 25 0.64
8 4 0.10
9 2 0.05
ACGTcount: A:0.72, C:0.02, G:0.22, T:0.04
Consensus pattern (7 bp):
AGAAAGA
Found at i:32716823 original size:29 final size:29
Alignment explanation
Indices: 32716768--32716822 Score: 85
Period size: 29 Copynumber: 1.9 Consensus size: 29
32716758 AAAGGCACGA
* *
32716768 GAAAGAAGAAAGAAGAAAGAAGAAAAATT
1 GAAACAAGAAAGAAGAAAGAAAAAAAATT
32716797 GAAACAAGAAAGAA-AAAGAAAAAAAA
1 GAAACAAGAAAGAAGAAAGAAAAAAAA
32716823 ACAGATGTGA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
28 11 0.46
29 13 0.54
ACGTcount: A:0.75, C:0.02, G:0.20, T:0.04
Consensus pattern (29 bp):
GAAACAAGAAAGAAGAAAGAAAAAAAATT
Found at i:32720248 original size:40 final size:40
Alignment explanation
Indices: 32720187--32720422 Score: 154
Period size: 40 Copynumber: 5.9 Consensus size: 40
32720177 TTATATTATA
* *
32720187 TACTAAAATGTATGTGCTTTCGAGCCATACATTCTAAATC
1 TACTGAAATGTATGTGCTTTCGAGCCATACATACTAAATC
* * * *
32720227 TACTGAAATGTATGCGTTTTCGAGCCATACCTACTGAATC
1 TACTGAAATGTATGTGCTTTCGAGCCATACATACTAAATC
* * * * * *
32720267 TACCGAAATGTATATGCTTTCGAGCCATTCCTATTGAATC
1 TACTGAAATGTATGTGCTTTCGAGCCATACATACTAAATC
** * * * * * *
32720307 TACCAAAAAGCATGTGCTTTCAAGCCATACCTATTGAATC
1 TACTGAAATGTATGTGCTTTCGAGCCATACATACTAAATC
* ** * * * *
32720347 TACT-AAA-GTATATGCGATTTTAAGCCATACCTACTGATTT
1 TACTGAAATGTATGTGC--TTTCGAGCCATACATACTAAATC
** * *
32720387 TACTGAAA-GTATGCCCTATCGAGCCATACCTACTAA
1 TACTGAAATGTATGTGCTTTCGAGCCATACATACTAA
32720423 TTATATTAAA
Statistics
Matches: 161, Mismatches: 32, Indels: 7
0.81 0.16 0.04
Matches are distributed among these distances:
38 6 0.04
39 19 0.12
40 128 0.80
41 8 0.05
ACGTcount: A:0.31, C:0.22, G:0.14, T:0.32
Consensus pattern (40 bp):
TACTGAAATGTATGTGCTTTCGAGCCATACATACTAAATC
Found at i:32724839 original size:16 final size:16
Alignment explanation
Indices: 32724818--32724849 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
32724808 ATTGTTTCAA
32724818 TATAAATTAACCTATG
1 TATAAATTAACCTATG
*
32724834 TATAAATTAATCTATG
1 TATAAATTAACCTATG
32724850 CTATGATGTA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.44, C:0.09, G:0.06, T:0.41
Consensus pattern (16 bp):
TATAAATTAACCTATG
Found at i:32728094 original size:14 final size:14
Alignment explanation
Indices: 32728077--32728103 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
32728067 CGACCTAAAC
32728077 ATTATGACCAAATA
1 ATTATGACCAAATA
32728091 ATTATGACCAAAT
1 ATTATGACCAAAT
32728104 CTAGAGAAGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.48, C:0.15, G:0.07, T:0.30
Consensus pattern (14 bp):
ATTATGACCAAATA
Found at i:32731158 original size:16 final size:16
Alignment explanation
Indices: 32731137--32731168 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
32731127 TTCACCCGTT
32731137 TGGGCCCACACGTCCA
1 TGGGCCCACACGTCCA
*
32731153 TGGGCCCACTCGTCCA
1 TGGGCCCACACGTCCA
32731169 CGAATCGTAC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.16, C:0.44, G:0.25, T:0.16
Consensus pattern (16 bp):
TGGGCCCACACGTCCA
Found at i:32733484 original size:55 final size:55
Alignment explanation
Indices: 32733390--32733493 Score: 122
Period size: 55 Copynumber: 1.9 Consensus size: 55
32733380 AGGATAGAAT
* *
32733390 ACAGTACGGGCGTGCAACACGCCCGTGTGGAAGAACCGTGGGT-GAACCTTGTAAA
1 ACAGCACGGGCGTGCAACACGCCCGTGTGCAAGAACCGT-GGTCGAACCTTGTAAA
* * * *
32733445 ACAGCACGGGTGTGCGACACGCCCGTGT-CTAGCACCCGTGGTCGAACCT
1 ACAGCACGGGCGTGCAACACGCCCGTGTGCAAG-AACCGTGGTCGAACCT
32733494 GTTAGATTGA
Statistics
Matches: 41, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
54 5 0.12
55 36 0.88
ACGTcount: A:0.23, C:0.29, G:0.32, T:0.16
Consensus pattern (55 bp):
ACAGCACGGGCGTGCAACACGCCCGTGTGCAAGAACCGTGGTCGAACCTTGTAAA
Found at i:32751821 original size:20 final size:20
Alignment explanation
Indices: 32751796--32751835 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
32751786 ACAAGTATAA
32751796 GAATTGATTGTTGCATGTAT
1 GAATTGATTGTTGCATGTAT
32751816 GAATTGATTGTTGCATGTAT
1 GAATTGATTGTTGCATGTAT
32751836 ATGGCTTAGG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.25, C:0.05, G:0.25, T:0.45
Consensus pattern (20 bp):
GAATTGATTGTTGCATGTAT
Found at i:32755801 original size:40 final size:40
Alignment explanation
Indices: 32755677--32755901 Score: 242
Period size: 40 Copynumber: 5.6 Consensus size: 40
32755667 TATTCGAATG
* *
32755677 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAGGTGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTA-GTGACT
* * *
32755718 ATAAT-CGGACTAAGATCCGAAGGCATTCGAATG--AGTTG-CT
1 AT-ATCCGGGCTAAGACCCGAAGGCATTTG--TGCTAG-TGACT
* *
32755758 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGACT
* *
32755798 ATATCCGGGCTAAAACCCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGACT
* * * *
32755838 ATATCCGGGCTAAGTCCTGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGACT
* *
32755878 ACATCCGGGCTAAGACCTGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGC
32755902 CTTGCGCAAG
Statistics
Matches: 156, Mismatches: 20, Indels: 17
0.81 0.10 0.09
Matches are distributed among these distances:
38 2 0.01
39 3 0.02
40 123 0.79
41 24 0.15
42 2 0.01
43 2 0.01
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.24
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGACT
Found at i:32755891 original size:120 final size:120
Alignment explanation
Indices: 32755677--32755901 Score: 280
Period size: 120 Copynumber: 1.9 Consensus size: 120
32755667 TATTCGAATG
** * *
32755677 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAGGTGACTATAATCGGACTAAGATCCGAAGGC
1 ATATCCGGGCTAAAACCCGAAGGCATTTGTGCTAGGCGACTATAATCGGACTAAGATCCGAAGGC
* *
32755742 ATTCGAATGAGTTGCTATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGATT
66 ATTC-AATGAGTTGCCACATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGATT
*
32755798 ATATCCGGGCTAAAACCCGAAGGCATTTGTGCTA-GCGACTAT-ATCCGGGCTAAG-TCCTGAAG
1 ATATCCGGGCTAAAACCCGAAGGCATTTGTGCTAGGCGACTATAAT-CGGACTAAGATCC-GAAG
* *
32755860 GCATT-TATGCTAG-TGACCACATCCGGGCTAAGACCTGAAGGC
64 GCATTCAATG--AGTTG-CCACATCCGGGCTAAGACCCGAAGGC
32755902 CTTGCGCAAG
Statistics
Matches: 90, Mismatches: 9, Indels: 11
0.82 0.08 0.10
Matches are distributed among these distances:
118 3 0.03
119 7 0.08
120 49 0.54
121 31 0.34
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.24
Consensus pattern (120 bp):
ATATCCGGGCTAAAACCCGAAGGCATTTGTGCTAGGCGACTATAATCGGACTAAGATCCGAAGGC
ATTCAATGAGTTGCCACATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGATT
Found at i:32763421 original size:40 final size:40
Alignment explanation
Indices: 32763361--32763506 Score: 229
Period size: 40 Copynumber: 3.6 Consensus size: 40
32763351 NNNNGAGTTG
32763361 CTATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGA
1 CTATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGA
* *
32763401 TTATATCCGGGCTAAAACCCGAAGGCATTTGTGCTAGCGA
1 CTATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGA
* * *
32763441 CTATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGA
1 CTATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGA
* *
32763481 CCACATCCGGGCTAAGACCCGAAGGC
1 CTATATCCGGGCTAAGACCCGAAGGC
32763507 CTTCGCAAGT
Statistics
Matches: 96, Mismatches: 10, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
40 96 1.00
ACGTcount: A:0.26, C:0.26, G:0.26, T:0.22
Consensus pattern (40 bp):
CTATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGA
Found at i:32763652 original size:50 final size:50
Alignment explanation
Indices: 32763577--32763676 Score: 191
Period size: 50 Copynumber: 2.0 Consensus size: 50
32763567 TCTGCTGTAA
*
32763577 TAATTTCAATTAATACGCTCGTAAAATCTCAACAACGAGGTATGTGTTGT
1 TAATTTCAATTAATACGCTCGTAAAATATCAACAACGAGGTATGTGTTGT
32763627 TAATTTCAATTAATACGCTCGTAAAATATCAACAACGAGGTATGTGTTGT
1 TAATTTCAATTAATACGCTCGTAAAATATCAACAACGAGGTATGTGTTGT
32763677 ACATGCATTG
Statistics
Matches: 49, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
50 49 1.00
ACGTcount: A:0.35, C:0.15, G:0.16, T:0.34
Consensus pattern (50 bp):
TAATTTCAATTAATACGCTCGTAAAATATCAACAACGAGGTATGTGTTGT
Found at i:32767410 original size:25 final size:25
Alignment explanation
Indices: 32767363--32767422 Score: 70
Period size: 25 Copynumber: 2.3 Consensus size: 25
32767353 CTAGGCACCC
32767363 ATTTTATTATTCATATAATATAAAAAT
1 ATTTTATTATT-ATATAATAT-AAAAT
32767390 ATTTTATTATT-TATACA-ATAAAAT
1 ATTTTATTATTATATA-ATATAAAAT
32767414 ATGTTTATT
1 AT-TTTATT
32767423 GGTGACTTCT
Statistics
Matches: 31, Mismatches: 0, Indels: 6
0.84 0.00 0.16
Matches are distributed among these distances:
24 7 0.23
25 12 0.39
26 1 0.03
27 11 0.35
ACGTcount: A:0.43, C:0.03, G:0.02, T:0.52
Consensus pattern (25 bp):
ATTTTATTATTATATAATATAAAAT
Found at i:32769363 original size:10 final size:10
Alignment explanation
Indices: 32769348--32769376 Score: 58
Period size: 10 Copynumber: 2.9 Consensus size: 10
32769338 TACATTGGGT
32769348 TTTCTTTTTA
1 TTTCTTTTTA
32769358 TTTCTTTTTA
1 TTTCTTTTTA
32769368 TTTCTTTTT
1 TTTCTTTTT
32769377 TGAAAAAAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 19 1.00
ACGTcount: A:0.07, C:0.10, G:0.00, T:0.83
Consensus pattern (10 bp):
TTTCTTTTTA
Found at i:32774257 original size:8 final size:8
Alignment explanation
Indices: 32774231--32774279 Score: 55
Period size: 8 Copynumber: 6.1 Consensus size: 8
32774221 TTATTTCTTT
32774231 TATTATTA
1 TATTATTA
**
32774239 TAACA-TA
1 TATTATTA
32774246 TATTATTA
1 TATTATTA
32774254 TATTATTA
1 TATTATTA
*
32774262 AATTATTA
1 TATTATTA
32774270 TAATTATTA
1 T-ATTATTA
32774279 T
1 T
32774280 TTCTTAAATA
Statistics
Matches: 33, Mismatches: 6, Indels: 3
0.79 0.14 0.07
Matches are distributed among these distances:
7 5 0.15
8 20 0.61
9 8 0.24
ACGTcount: A:0.43, C:0.02, G:0.00, T:0.55
Consensus pattern (8 bp):
TATTATTA
Found at i:32781564 original size:46 final size:45
Alignment explanation
Indices: 32781510--32781685 Score: 187
Period size: 46 Copynumber: 3.8 Consensus size: 45
32781500 TGTTTGGGCA
32781510 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* ** * *
32781556 TCCAAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATAT-AACTAG-GCA-
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC---ACTTATGGA-T-GCGAAG
*
32781603 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* * *
32781649 CCCGAGCTCATTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
32781686 GCGGGTTACA
Statistics
Matches: 108, Mismatches: 13, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
43 1 0.01
44 7 0.06
45 1 0.01
46 63 0.58
47 27 0.25
48 1 0.01
49 7 0.06
50 1 0.01
ACGTcount: A:0.23, C:0.21, G:0.28, T:0.28
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAG
Found at i:32781665 original size:93 final size:93
Alignment explanation
Indices: 32781506--32781677 Score: 290
Period size: 93 Copynumber: 1.8 Consensus size: 93
32781496 AGGATGTTTG
* * *
32781506 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCAAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCAAACTCATTGAG
32781571 TTGAGTCCGAGTTCGAGAGATATAACTA
66 TTGAGTCCGAGTTCGAGAGATATAACTA
* * *
32781599 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCATTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCAAACTCATTGAG
32781664 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
32781678 ACTTATGGGC
Statistics
Matches: 73, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.27
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCAAACTCATTGAG
TTGAGTCCGAGTTCGAGAGATATAACTA
Found at i:32783947 original size:72 final size:72
Alignment explanation
Indices: 32783830--32783970 Score: 255
Period size: 72 Copynumber: 2.0 Consensus size: 72
32783820 TCTACACCTA
32783830 CTTTTAACAAGTTTCAACTCTTAATATTCAATATAAAACATCAATTCTACAATTTAAACAACTTA
1 CTTTTAACAAGTTTCAACTCTTAATATTCAATATAAAACATCAATTCTACAATTTAAACAACTTA
32783895 GTCCTTG
66 GTCCTTG
* * *
32783902 CTTTTAATAAGTTTCAACTCTTAATATTCAATATAAAACCTCAATTCTATAATTTAAACAACTTA
1 CTTTTAACAAGTTTCAACTCTTAATATTCAATATAAAACATCAATTCTACAATTTAAACAACTTA
32783967 GTCC
66 GTCC
32783971 CTACTATAAT
Statistics
Matches: 66, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
72 66 1.00
ACGTcount: A:0.39, C:0.19, G:0.04, T:0.38
Consensus pattern (72 bp):
CTTTTAACAAGTTTCAACTCTTAATATTCAATATAAAACATCAATTCTACAATTTAAACAACTTA
GTCCTTG
Found at i:32784254 original size:48 final size:48
Alignment explanation
Indices: 32784183--32784278 Score: 174
Period size: 48 Copynumber: 2.0 Consensus size: 48
32784173 GATTAAATTG
*
32784183 ACTTACCAATCAAGCTTGAAATCTTAAAACCCAAATTTTCCCTTTTCT
1 ACTTACCAATCAAGCTTAAAATCTTAAAACCCAAATTTTCCCTTTTCT
*
32784231 ACTTACCAATCAAGCTTAAAATCTTAAAACCCTAATTTTCCCTTTTCT
1 ACTTACCAATCAAGCTTAAAATCTTAAAACCCAAATTTTCCCTTTTCT
32784279 TTTTCTTTCC
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
48 46 1.00
ACGTcount: A:0.33, C:0.27, G:0.03, T:0.36
Consensus pattern (48 bp):
ACTTACCAATCAAGCTTAAAATCTTAAAACCCAAATTTTCCCTTTTCT
Found at i:32784388 original size:8 final size:8
Alignment explanation
Indices: 32784362--32784410 Score: 55
Period size: 8 Copynumber: 6.1 Consensus size: 8
32784352 TTATTTCTTT
32784362 TATTATTA
1 TATTATTA
**
32784370 TAACA-TA
1 TATTATTA
32784377 TATTATTA
1 TATTATTA
32784385 TATTATTA
1 TATTATTA
*
32784393 AATTATTA
1 TATTATTA
32784401 TAATTATTA
1 T-ATTATTA
32784410 T
1 T
32784411 TTCTTAAATA
Statistics
Matches: 33, Mismatches: 6, Indels: 3
0.79 0.14 0.07
Matches are distributed among these distances:
7 5 0.15
8 20 0.61
9 8 0.24
ACGTcount: A:0.43, C:0.02, G:0.00, T:0.55
Consensus pattern (8 bp):
TATTATTA
Found at i:32784636 original size:40 final size:40
Alignment explanation
Indices: 32784591--32784676 Score: 163
Period size: 40 Copynumber: 2.1 Consensus size: 40
32784581 CCTTACACTA
*
32784591 AATTAACCTTAATTAAGCTAAATTTACTTAACTAAAATCT
1 AATTAACCTTAATTAAACTAAATTTACTTAACTAAAATCT
32784631 AATTAACCTTAATTAAACTAAATTTACTTAACTAAAATCT
1 AATTAACCTTAATTAAACTAAATTTACTTAACTAAAATCT
32784671 AATTAA
1 AATTAA
32784677 TCTCTCACTT
Statistics
Matches: 45, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
40 45 1.00
ACGTcount: A:0.48, C:0.14, G:0.01, T:0.37
Consensus pattern (40 bp):
AATTAACCTTAATTAAACTAAATTTACTTAACTAAAATCT
Found at i:32785126 original size:25 final size:25
Alignment explanation
Indices: 32785064--32785129 Score: 73
Period size: 25 Copynumber: 2.6 Consensus size: 25
32785054 CTTCCGAGTC
32785064 ATATAACGGGAAGCTCATGTAAGCG
1 ATATAACGGGAAGCTCATGTAAGCG
* *
32785089 A-AGTAACGAGAAGCTCATGTGAA-CT
1 ATA-TAACGGGAAGCTCATGT-AAGCG
*
32785114 ATATATCGGGAAGCTC
1 ATATAACGGGAAGCTC
32785130 TTACGAGCCA
Statistics
Matches: 34, Mismatches: 4, Indels: 6
0.77 0.09 0.14
Matches are distributed among these distances:
24 1 0.03
25 30 0.88
26 3 0.09
ACGTcount: A:0.36, C:0.17, G:0.26, T:0.21
Consensus pattern (25 bp):
ATATAACGGGAAGCTCATGTAAGCG
Found at i:32786474 original size:32 final size:32
Alignment explanation
Indices: 32786437--32786499 Score: 83
Period size: 32 Copynumber: 2.0 Consensus size: 32
32786427 TAATAAATTT
*
32786437 ATTAA-TAGATTACTTGAATTTAATAACTCATG
1 ATTAATTA-ATTAATTGAATTTAATAACTCATG
* *
32786469 ATTAATTAATTAATTTAATTTGATAACTCAT
1 ATTAATTAATTAATTGAATTTAATAACTCAT
32786500 ACTAATTTTT
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
32 25 0.93
33 2 0.07
ACGTcount: A:0.41, C:0.08, G:0.06, T:0.44
Consensus pattern (32 bp):
ATTAATTAATTAATTGAATTTAATAACTCATG
Found at i:32791103 original size:44 final size:43
Alignment explanation
Indices: 32790971--32791129 Score: 137
Period size: 43 Copynumber: 3.7 Consensus size: 43
32790961 AGCTTGTACA
* * * *
32790971 ATGCCAACATCCCAGACGTGGTCTTAGATGT-AATCAAATATCG
1 ATGCCAACATCCCAGACATGGTCTTACACGTAAATCAAA-ATTG
* * * * *
32791014 ATGCC-ACTATCCCCGGCAGGGTCTTTCACG-AAATC-ATATATG
1 ATGCCAAC-ATCCCAGACATGGTCTTACACGTAAATCAAAAT-TG
**
32791056 ATGCCAATGTCCCAGACATGGTCTTACACGTAAATCACAAATTG
1 ATGCCAACATCCCAGACATGGTCTTACACGTAAATCA-AAATTG
* *
32791100 ATGCCAACGTCCCAGACGTGGTCTTACACG
1 ATGCCAACATCCCAGACATGGTCTTACACG
32791130 ATAACACATA
Statistics
Matches: 91, Mismatches: 18, Indels: 13
0.75 0.15 0.11
Matches are distributed among these distances:
41 2 0.02
42 26 0.29
43 30 0.33
44 30 0.33
45 3 0.03
ACGTcount: A:0.30, C:0.27, G:0.19, T:0.25
Consensus pattern (43 bp):
ATGCCAACATCCCAGACATGGTCTTACACGTAAATCAAAATTG
Found at i:32802822 original size:40 final size:40
Alignment explanation
Indices: 32802767--32803638 Score: 1604
Period size: 40 Copynumber: 21.8 Consensus size: 40
32802757 ATAACCACAA
* * * *
32802767 GCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTC
1 GCACAAATGCCTTCGGGTCTTACCCCGGATATATCAACTC
32802807 GCACAAATGCCTTCGGGTCTTACCCCGGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTACCCCGGATATATCAACTC
* *
32802847 GCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATC-ACTC
1 GCACAAATGCCTTCGGGTCTTACCCCGGAT-ATATCAACTC
32802887 GCACAAATGCCTTCGGGTCTTACCCCGGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTACCCCGGATATATCAACTC
32802927 GCACAAATGCCTTCGGGTCTTACCCCGGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTACCCCGGATATATCAACTC
32802967 GCACAAATGCCTTCGGGTCTTACCCCGGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTACCCCGGATATATCAACTC
32803007 GCACAAATGCCTTCGGGTCTTACCCCGGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTACCCCGGATATATCAACTC
32803047 GCACAAATGCCTTCGGGTCTTACCCCGGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTACCCCGGATATATCAACTC
32803087 GCACAAATGCCTTCGGGTCTTACCCCGGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTACCCCGGATATATCAACTC
32803127 GCACAAATGCCTTCGGGTCTTACCCCGGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTACCCCGGATATATCAACTC
32803167 GCACAAATGCCTTCGGGTCTTACCCCGGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTACCCCGGATATATCAACTC
32803207 GCACAAATGCCTTCGGGTCTTACCCCGGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTACCCCGGATATATCAACTC
32803247 GCACAAATGCCTTCGGGTCTTACCCCGGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTACCCCGGATATATCAACTC
32803287 GCACAAATGCCTTCGGGTCTTACCCCGGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTACCCCGGATATATCAACTC
32803327 GCACAAATGCCTTCGGGTCTTACCCCGGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTACCCCGGATATATCAACTC
32803367 GCACAAATGCCTTCGGGTCTTACCCCGGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTACCCCGGATATATCAACTC
32803407 GCACAAATGCCTTCGGGTCTTACCCCGGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTACCCCGGATATATCAACTC
32803447 GCACAAATGCCTTCGGGTCTTACCCCGGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTACCCCGGATATATCAACTC
32803487 GCACAAATGCCTTCGGGTCTTACCCCGGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTACCCCGGATATATCAACTC
32803527 GCACAAATGCCTTCGGGTCTTACCCCGGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTACCCCGGATATATCAACTC
* * *
32803567 GCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATC-ACTA
1 GCACAAATGCCTTCGGGTCTTACCCCGGAT-ATATCAACTC
* * *
32803607 GCATAAATGCCTTCGGGACTTAGCCCGGATAT
1 GCACAAATGCCTTCGGGTCTTACCCCGGATAT
32803639 CATTCAAATG
Statistics
Matches: 815, Mismatches: 14, Indels: 7
0.97 0.02 0.01
Matches are distributed among these distances:
39 5 0.01
40 802 0.98
41 8 0.01
ACGTcount: A:0.25, C:0.32, G:0.18, T:0.25
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTACCCCGGATATATCAACTC
Found at i:32806591 original size:21 final size:21
Alignment explanation
Indices: 32806553--32806592 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
32806543 ATTACTCCAA
*
32806553 AGAAGCTGATTGATTCATCTC
1 AGAAGCTGATTCATTCATCTC
32806574 AGAAGCTGGATTCA-TCATC
1 AGAAGCT-GATTCATTCATC
32806593 AAGATTGAAG
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
21 12 0.71
22 5 0.29
ACGTcount: A:0.30, C:0.20, G:0.20, T:0.30
Consensus pattern (21 bp):
AGAAGCTGATTCATTCATCTC
Found at i:32819182 original size:47 final size:47
Alignment explanation
Indices: 32819106--32819235 Score: 131
Period size: 47 Copynumber: 2.8 Consensus size: 47
32819096 AGGGTAAGGT
* * *
32819106 GTCGATGCCATGTCCTAGACACGGGCTTACACTGGCTCAT-ATCTC-AA
1 GTCGATG-CATGTCCCAGACATGGTCTTACACTGGCT-ATCATCTCGAA
* *
32819153 GTCGATGTCATGTCCCAGACATGGTCTTACACTGACTATCATCTCGTA
1 GTCGATG-CATGTCCCAGACATGGTCTTACACTGGCTATCATCTCGAA
* * * *
32819201 GCCGATGCATATCCCAAACAT-GTCTTACAATGGCT
1 GTCGATGCATGTCCCAGACATGGTCTTACACTGGCT
32819236 TACGTCTCGA
Statistics
Matches: 70, Mismatches: 11, Indels: 5
0.81 0.13 0.06
Matches are distributed among these distances:
46 14 0.20
47 49 0.70
48 7 0.10
ACGTcount: A:0.25, C:0.28, G:0.19, T:0.28
Consensus pattern (47 bp):
GTCGATGCATGTCCCAGACATGGTCTTACACTGGCTATCATCTCGAA
Found at i:32824162 original size:126 final size:127
Alignment explanation
Indices: 32824022--32824268 Score: 379
Period size: 126 Copynumber: 2.0 Consensus size: 127
32824012 AAAACGCCGC
* ** * *
32824022 AAAAAAATCATTTTACTTTGTACAAAATGGTGCCATTTTGTATTGCACTTTTAGTGGCGTTAGC-
1 AAAAAAATCATTTTACTTTATACAAAACAGTGCCATTTTGTATGGCACTTTTACTGGCGTTAGCG
* * *
32824086 GCGCTACTTTAAAAAGGCCGCAATAGGTCGATCTTTAGCGGCGCTATGTGAAAAACATCGCA
66 GCGCTACTTTAAAAAGGCCGCAATAGGTCAATCTTTAGCGGCACTAGGTGAAAAACATCGCA
* * *
32824148 AAAAAAATCGTTTTACTTTATACAAAACAGTGTCGTTTTGTATGGCACTTTTACTGGCGTTAGCG
1 AAAAAAATCATTTTACTTTATACAAAACAGTGCCATTTTGTATGGCACTTTTACTGGCGTTAGCG
*
32824213 GCGCTACTTTAAAAATGCCGCAATAGGTCAATCTTTAGCGGCACTAGGTGAAAAAC
66 GCGCTACTTTAAAAAGGCCGCAATAGGTCAATCTTTAGCGGCACTAGGTGAAAAAC
32824269 GCCTTAAAAA
Statistics
Matches: 108, Mismatches: 12, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
126 56 0.52
127 52 0.48
ACGTcount: A:0.31, C:0.18, G:0.20, T:0.31
Consensus pattern (127 bp):
AAAAAAATCATTTTACTTTATACAAAACAGTGCCATTTTGTATGGCACTTTTACTGGCGTTAGCG
GCGCTACTTTAAAAAGGCCGCAATAGGTCAATCTTTAGCGGCACTAGGTGAAAAACATCGCA
Found at i:32824575 original size:34 final size:35
Alignment explanation
Indices: 32824526--32824592 Score: 109
Period size: 34 Copynumber: 1.9 Consensus size: 35
32824516 CCCTAACATT
*
32824526 TCCCCAAATATTTTTTTCCCAAATCAGTTCCCCCC
1 TCCCCAAATATTTTTTCCCCAAATCAGTTCCCCCC
*
32824561 TCCCGAAATA-TTTTTCCCCAAATCAGTTCCCC
1 TCCCCAAATATTTTTTCCCCAAATCAGTTCCCC
32824593 AAATCACCGT
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
34 21 0.70
35 9 0.30
ACGTcount: A:0.24, C:0.39, G:0.04, T:0.33
Consensus pattern (35 bp):
TCCCCAAATATTTTTTCCCCAAATCAGTTCCCCCC
Found at i:32824592 original size:13 final size:13
Alignment explanation
Indices: 32824574--32824598 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
32824564 CGAAATATTT
32824574 TTCCCCAAATCAG
1 TTCCCCAAATCAG
32824587 TTCCCCAAATCA
1 TTCCCCAAATCA
32824599 CCGTCGACAG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.40, G:0.04, T:0.24
Consensus pattern (13 bp):
TTCCCCAAATCAG
Found at i:32827729 original size:44 final size:42
Alignment explanation
Indices: 32827591--32827734 Score: 171
Period size: 43 Copynumber: 3.3 Consensus size: 42
32827581 TTGTATAAAT
* * *
32827591 GCTGCTAAAAGTCATGTTCTTTAGCGGCGTTTATGGTAAAAGC
1 GCTGCTAAAGGTCATGTTCTATAGCGGCGTTTGTGG-AAAAGC
32827634 GCTGCTAAAGGTCATGTTCTATAGCGGCGTTTGTAGGAAAAGC
1 GCTGCTAAAGGTCATGTTCTATAGCGGCGTTTGT-GGAAAAGC
* ** *
32827677 GCTACTAAAAGGTCATGTTCTATAGTAGCATTTGTGGAAAAAGC
1 GCTGCT-AAAGGTCATGTTCTATAGCGGCGTTTGTGG-AAAAGC
* *
32827721 ACCGCTAAAGGTCA
1 GCTGCTAAAGGTCA
32827735 CATTAAATGT
Statistics
Matches: 88, Mismatches: 10, Indels: 6
0.85 0.10 0.06
Matches are distributed among these distances:
43 52 0.59
44 36 0.41
ACGTcount: A:0.29, C:0.17, G:0.26, T:0.28
Consensus pattern (42 bp):
GCTGCTAAAGGTCATGTTCTATAGCGGCGTTTGTGGAAAAGC
Found at i:32836101 original size:2 final size:2
Alignment explanation
Indices: 32836094--32836122 Score: 51
Period size: 2 Copynumber: 15.0 Consensus size: 2
32836084 AGACCTTATT
32836094 TA TA TA TA TA TA TA TA TA TA TA TA T- TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
32836123 AACTAAAATT
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
1 1 0.04
2 25 0.96
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:32840469 original size:8 final size:7
Alignment explanation
Indices: 32840449--32840483 Score: 52
Period size: 7 Copynumber: 4.7 Consensus size: 7
32840439 GGTATTCTAC
32840449 TTTTTCT
1 TTTTTCT
32840456 TTTTTCT
1 TTTTTCT
32840463 TTGTTTCTT
1 TT-TTTC-T
32840472 TTTTTCT
1 TTTTTCT
32840479 TTTTT
1 TTTTT
32840484 AGAATCTTTA
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
7 15 0.58
8 8 0.31
9 3 0.12
ACGTcount: A:0.00, C:0.11, G:0.03, T:0.86
Consensus pattern (7 bp):
TTTTTCT
Found at i:32840471 original size:15 final size:16
Alignment explanation
Indices: 32840451--32840480 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
32840441 TATTCTACTT
32840451 TTTC-TTTTTTCTTTG
1 TTTCTTTTTTTCTTTG
32840466 TTTCTTTTTTTCTTT
1 TTTCTTTTTTTCTTT
32840481 TTTAGAATCT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 4 0.29
16 10 0.71
ACGTcount: A:0.00, C:0.13, G:0.03, T:0.83
Consensus pattern (16 bp):
TTTCTTTTTTTCTTTG
Found at i:32843531 original size:39 final size:37
Alignment explanation
Indices: 32843402--32843542 Score: 101
Period size: 39 Copynumber: 3.7 Consensus size: 37
32843392 ATAGTATCAT
* *
32843402 ATATTATG-ATTTGAGTAAATTCATATAAGAATA-TTA
1 ATATTAAGAATTTTAGTAAATT-ATATAAGAATATTTA
* ** *
32843438 ATTATTAAGAATTTTATTAAATTATATATTTTAAT-TATAA
1 A-TATTAAGAATTTTAGTAAATTATATA--AGAATAT-TTA
* *
32843478 TATATTTA-ANTTTTAGTAAATTCATATAAGAATATTTTA
1 -ATATTAAGAATTTTAGTAAATT-ATATAAGAATA-TTTA
*
32843517 ATATTAAGAATTTTATTAAATTATAT
1 ATATTAAGAATTTTAGTAAATTATAT
32843543 TTTTTTATTA
Statistics
Matches: 79, Mismatches: 15, Indels: 20
0.69 0.13 0.18
Matches are distributed among these distances:
36 1 0.01
37 11 0.14
38 24 0.30
39 29 0.37
40 13 0.16
41 1 0.01
ACGTcount: A:0.44, C:0.01, G:0.06, T:0.48
Consensus pattern (37 bp):
ATATTAAGAATTTTAGTAAATTATATAAGAATATTTA
Found at i:32843540 original size:78 final size:76
Alignment explanation
Indices: 32843401--32843565 Score: 235
Period size: 78 Copynumber: 2.1 Consensus size: 76
32843391 TATAGTATCA
* *
32843401 TATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAATTATATA
1 TATATT-TAATTTTAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAATTATATA
32843466 TTTTAATTATAA-
65 TTTTAATTA-AAT
32843478 TATATTTAANTTTTAGTAAATTCATATAAGAATATTTTAA-TATTAAGAATTTTATTAAATTATA
1 TATATTTAA-TTTTAGTAAATTCATATAAGAATA--TTAATTATTAAGAATTTTATTAAATTATA
* *
32843542 TTTTTTTATTAAAT
63 TATTTTAATTAAAT
32843556 TATATTTAAT
1 TATATTTAAT
32843566 AATTATTATT
Statistics
Matches: 80, Mismatches: 4, Indels: 8
0.87 0.04 0.09
Matches are distributed among these distances:
76 2 0.03
77 32 0.40
78 42 0.52
79 4 0.05
ACGTcount: A:0.42, C:0.01, G:0.05, T:0.51
Consensus pattern (76 bp):
TATATTTAATTTTAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAATTATATAT
TTTAATTAAAT
Found at i:32843548 original size:18 final size:18
Alignment explanation
Indices: 32843527--32843562 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
32843517 ATATTAAGAA
32843527 TTTTATTAAATTATATTT
1 TTTTATTAAATTATATTT
32843545 TTTTATTAAATTATATTT
1 TTTTATTAAATTATATTT
32843563 AATAATTATT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (18 bp):
TTTTATTAAATTATATTT
Found at i:32843569 original size:13 final size:13
Alignment explanation
Indices: 32843553--32843610 Score: 64
Period size: 13 Copynumber: 4.3 Consensus size: 13
32843543 TTTTTTATTA
*
32843553 AATTATATTTAAT
1 AATTATATTTTAT
32843566 AATTATTATTTTA-
1 AATTA-TATTTTAT
32843579 AATTATATTTTAT
1 AATTATATTTTAT
*
32843592 ACTATTATATATTAT
1 A--ATTATATTTTAT
32843607 AATT
1 AATT
32843611 TTAGTAAATT
Statistics
Matches: 39, Mismatches: 2, Indels: 8
0.80 0.04 0.16
Matches are distributed among these distances:
12 7 0.18
13 14 0.36
14 6 0.15
15 12 0.31
ACGTcount: A:0.41, C:0.02, G:0.00, T:0.57
Consensus pattern (13 bp):
AATTATATTTTAT
Found at i:32843570 original size:18 final size:18
Alignment explanation
Indices: 32843531--32843570 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
32843521 TAAGAATTTT
** *
32843531 ATTAAATTATATTTTTTT
1 ATTAAATTATATTTAATA
32843549 ATTAAATTATATTTAATA
1 ATTAAATTATATTTAATA
32843567 ATTA
1 ATTA
32843571 TTATTTTAAA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.57
Consensus pattern (18 bp):
ATTAAATTATATTTAATA
Found at i:32843625 original size:22 final size:21
Alignment explanation
Indices: 32843599--32843665 Score: 64
Period size: 22 Copynumber: 3.1 Consensus size: 21
32843589 TATACTATTA
32843599 TATATTATAATTTTAGTAAAT
1 TATATTATAATTTTAGTAAAT
* * *
32843620 TCATATAAGAATTTTATTAAAT
1 T-ATATTATAATTTTAGTAAAT
* *
32843642 TATAATAT-ATTTTAATATAAT
1 TATATTATAATTTTAGTA-AAT
32843663 TAT
1 TAT
32843666 GTTTAAATAT
Statistics
Matches: 37, Mismatches: 7, Indels: 4
0.77 0.15 0.08
Matches are distributed among these distances:
20 8 0.22
21 11 0.30
22 18 0.49
ACGTcount: A:0.45, C:0.01, G:0.03, T:0.51
Consensus pattern (21 bp):
TATATTATAATTTTAGTAAAT
Found at i:32843908 original size:16 final size:16
Alignment explanation
Indices: 32843887--32843922 Score: 72
Period size: 16 Copynumber: 2.2 Consensus size: 16
32843877 AATTTACTAT
32843887 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
32843903 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
32843919 TACA
1 TACA
32843923 GCGAAACAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.39, C:0.36, G:0.00, T:0.25
Consensus pattern (16 bp):
TACACCTCTAATCCAA
Done.