Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold10837.1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3263
ACGTcount: A:0.33, C:0.19, G:0.15, T:0.32


Found at i:2111 original size:15 final size:15

Alignment explanation


    Indices: 2091--2130  Score: 73
    Period size: 14  Copynumber: 2.7  Consensus size: 15

       2081 TAGCTTCTTC

                           
       2091 TTTTTTTTTCACGAA
          1 TTTTTTTTTCACGAA

                           
       2106 -TTTTTTTTCACGAA
          1 TTTTTTTTTCACGAA

                       
       2120 TTTTTTTTTCA
          1 TTTTTTTTTCA

       2131 ACTTGATATC


Statistics
Matches: 24,  Mismatches: 0, Indels: 2
        0.92            0.00        0.08

Matches are distributed among these distances:
  14   14  0.58
  15   10  0.42

ACGTcount: A:0.17, C:0.12, G:0.05, T:0.65


Consensus pattern (15 bp):   
TTTTTTTTTCACGAA
Done.