Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: scaffold476.1
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 1033605
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 27032 characters in sequence are not A, C, G, or T
File 4 of 4
Found at i:854913 original size:24 final size:25
Alignment explanation
Indices: 854818--854913 Score: 92
Period size: 25 Copynumber: 3.9 Consensus size: 25
854808 AAGGGCTATG
* *
854818 CCCCAGTTTACCGAAAAG-GGCTTTG
1 CCCCAGTTTATC-AAAAGAGGCTTTA
* *
854843 CCCCAGTTTACCGAAAAG-GGCTTTG
1 CCCCAGTTTATC-AAAAGAGGCTTTA
854868 CCCCAGTTTATCAAAA-AGGGCTTTA
1 CCCCAGTTTATCAAAAGA-GGCTTTA
*
854893 CCCCAG-TTATTAAAAGAGGCT
1 CCCCAGTTTATCAAAAGAGGCT
854914 AGGCCTCCAG
Statistics
Matches: 65, Mismatches: 3, Indels: 7
0.87 0.04 0.09
Matches are distributed among these distances:
24 16 0.25
25 49 0.75
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.25
Consensus pattern (25 bp):
CCCCAGTTTATCAAAAGAGGCTTTA
Found at i:854924 original size:50 final size:50
Alignment explanation
Indices: 854804--854925 Score: 149
Period size: 50 Copynumber: 2.4 Consensus size: 50
854794 GGAGGAAGTG
* *
854804 CTAAAAGGGCTATGCCCCAGTTTACCGAAAAGGGCTTTGCCCCAGTTTAC
1 CTAAAAGGGCTATGCCCCAGTTTACCAAAAAGGGCTTTACCCCAGTTTAC
* * *
854854 CGAAAAGGGCTTTGCCCCAGTTTATCAAAAAGGGCTTTACCCCAG-TTA-
1 CTAAAAGGGCTATGCCCCAGTTTACCAAAAAGGGCTTTACCCCAGTTTAC
* *
854902 TTAAAAGAGGCTAGGCCTCCAGTT
1 CTAAAAG-GGCTATGCC-CCAGTT
854926 ATATGATAAA
Statistics
Matches: 61, Mismatches: 9, Indels: 4
0.82 0.12 0.05
Matches are distributed among these distances:
48 5 0.08
49 10 0.16
50 46 0.75
ACGTcount: A:0.28, C:0.25, G:0.22, T:0.25
Consensus pattern (50 bp):
CTAAAAGGGCTATGCCCCAGTTTACCAAAAAGGGCTTTACCCCAGTTTAC
Found at i:855107 original size:42 final size:42
Alignment explanation
Indices: 855048--855139 Score: 157
Period size: 42 Copynumber: 2.2 Consensus size: 42
855038 TAGTCTCCCC
* *
855048 AAATGGGCTTGCATACATTCATTGGTATTTCATGTGATATTG
1 AAATGGGCTTGCATACATTCAATGATATTTCATGTGATATTG
*
855090 AAATGGGCTTGCATACATTCAATGATATTTCATGTGTTATTG
1 AAATGGGCTTGCATACATTCAATGATATTTCATGTGATATTG
855132 AAATGGGC
1 AAATGGGC
855140 CTATAGGCCA
Statistics
Matches: 47, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
42 47 1.00
ACGTcount: A:0.28, C:0.12, G:0.22, T:0.38
Consensus pattern (42 bp):
AAATGGGCTTGCATACATTCAATGATATTTCATGTGATATTG
Found at i:859991 original size:12 final size:12
Alignment explanation
Indices: 859965--860013 Score: 55
Period size: 12 Copynumber: 4.2 Consensus size: 12
859955 CGGCAAAGGC
*
859965 AAAAAAAATAA-
1 AAAAAGAATAAG
859976 AAAAAGAATAAG
1 AAAAAGAATAAG
*
859988 AAAAAGAAAAAG
1 AAAAAGAATAAG
* *
860000 AAGAAGAAGAAG
1 AAAAAGAATAAG
860012 AA
1 AA
860014 GAAAAACCCA
Statistics
Matches: 33, Mismatches: 4, Indels: 1
0.87 0.11 0.03
Matches are distributed among these distances:
11 10 0.30
12 23 0.70
ACGTcount: A:0.80, C:0.00, G:0.16, T:0.04
Consensus pattern (12 bp):
AAAAAGAATAAG
Found at i:859999 original size:18 final size:18
Alignment explanation
Indices: 859976--860013 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
859966 AAAAAAATAA
*
859976 AAAAAGAATAAGAAAAAG
1 AAAAAGAAGAAGAAAAAG
*
859994 AAAAAGAAGAAGAAGAAG
1 AAAAAGAAGAAGAAAAAG
860012 AA
1 AA
860014 GAAAAACCCA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.76, C:0.00, G:0.21, T:0.03
Consensus pattern (18 bp):
AAAAAGAAGAAGAAAAAG
Found at i:861809 original size:64 final size:64
Alignment explanation
Indices: 861725--861852 Score: 202
Period size: 64 Copynumber: 2.0 Consensus size: 64
861715 TCATTCATGA
* * * *
861725 CACATTTAGTTAGGAGCATTTGATCCATTTCGATCATAGCATTCTAATTATTTGACATAAGCAT
1 CACATCTAGTTAGGAACATTTGATCCATTTCAATCATAGCATCCTAATTATTTGACATAAGCAT
* *
861789 CACATCTAGTTAGGAACATTTGATTCATTTCAATCATAGCATCCTAATTATTTGGCATAAGCAT
1 CACATCTAGTTAGGAACATTTGATCCATTTCAATCATAGCATCCTAATTATTTGACATAAGCAT
861853 AGGCCTATGA
Statistics
Matches: 58, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
64 58 1.00
ACGTcount: A:0.32, C:0.18, G:0.13, T:0.37
Consensus pattern (64 bp):
CACATCTAGTTAGGAACATTTGATCCATTTCAATCATAGCATCCTAATTATTTGACATAAGCAT
Found at i:862113 original size:133 final size:133
Alignment explanation
Indices: 861875--862520 Score: 882
Period size: 133 Copynumber: 4.9 Consensus size: 133
861865 CCGATTCTAA
** * * *
861875 AGATCTTGTCTCTTTGAAGTTGCAGTGGAGCAGATCGAAGATGGTGAATCTTGTCTTCCTGGAGT
1 AGATCTTGTCTCCCTGAAGTTGCAGTGGAGCAGATCGAAGACGGCGAATCTTGTCTTCCTGAAGT
* * *
861940 TACAGTGAAGCAAATTTAAGCCACTATCCTATCTCCCTAAAGTTGTAGTGGAGTAGGCTGAAGAT
66 TGCAGTGAAGCAGATTTAAGCCACCATCCTATCTCCCTAAAGTTGTAGTGGAGTAGGCTGAAGAT
*
862005 TTT
131 TGT
* * *
862008 AGATCTTGTCTCCCTGAAGTTGCAGTGGAGCAGATCAAAAACGGCAAATCTTGTCTTCCTGAAGT
1 AGATCTTGTCTCCCTGAAGTTGCAGTGGAGCAGATCGAAGACGGCGAATCTTGTCTTCCTGAAGT
* * * *
862073 TGTAGTGAAGCAGATTTAAGCCACCATCCTATCTCTCTAAATTTGTAGTGAAGTAGGCTGAAGAT
66 TGCAGTGAAGCAGATTTAAGCCACCATCCTATCTCCCTAAAGTTGTAGTGGAGTAGGCTGAAGAT
862138 TGT
131 TGT
* * * * ** *
862141 AGATCTTGTCTCCCTAAAGTTGTAGTGCAGCAAATCGAAGACAACGAATCTTGTCTTCCTTAAGT
1 AGATCTTGTCTCCCTGAAGTTGCAGTGGAGCAGATCGAAGACGGCGAATCTTGTCTTCCTGAAGT
* * *
862206 TGCAGTGAAGCAGATTTAAGCCACCATCCTATCTCTCTAAATTTGTAGTGAAGTAGGCTGAAGAT
66 TGCAGTGAAGCAGATTTAAGCCACCATCCTATCTCCCTAAAGTTGTAGTGGAGTAGGCTGAAGAT
862271 TGT
131 TGT
* * * * ** *
862274 AGATCTTGTCTCCCTAAAGTTGTAGTGCAGCAAATCGAAGACAACGAATCTTGTCTTCCTTAAGT
1 AGATCTTGTCTCCCTGAAGTTGCAGTGGAGCAGATCGAAGACGGCGAATCTTGTCTTCCTGAAGT
* *
862339 TGCAGTGAAGCAGATTTAAGCCACCATCCTATCTCCCT-AAGTTGTAGTGGACTAGACTGAAGAT
66 TGCAGTGAAGCAGATTTAAGCCACCATCCTATCTCCCTAAAGTTGTAGTGGAGTAGGCTGAAGAT
*
862403 CGT
131 TGT
* * * *
862406 AGATCTTGCCTCCCTGAAGTTGCAGTGGAGCAGATCAAAGACGGTGAATCTTGTCTTCCTGAAAT
1 AGATCTTGTCTCCCTGAAGTTGCAGTGGAGCAGATCGAAGACGGCGAATCTTGTCTTCCTGAAGT
* * * *
862471 TGCAGTGAAGCAGATTTAAGCCATCATTCTATCTCACTAAA-TAGTAGTGG
66 TGCAGTGAAGCAGATTTAAGCCACCATCCTATCTCCCTAAAGTTGTAGTGG
862521 GGCCGGTTGA
Statistics
Matches: 464, Mismatches: 48, Indels: 3
0.90 0.09 0.01
Matches are distributed among these distances:
132 121 0.26
133 343 0.74
ACGTcount: A:0.28, C:0.19, G:0.22, T:0.30
Consensus pattern (133 bp):
AGATCTTGTCTCCCTGAAGTTGCAGTGGAGCAGATCGAAGACGGCGAATCTTGTCTTCCTGAAGT
TGCAGTGAAGCAGATTTAAGCCACCATCCTATCTCCCTAAAGTTGTAGTGGAGTAGGCTGAAGAT
TGT
Found at i:862165 original size:45 final size:44
Alignment explanation
Indices: 861971--862439 Score: 188
Period size: 45 Copynumber: 10.6 Consensus size: 44
861961 CACTATCCTA
* * * *
861971 TCTCCCTAAAGTTGTAGTGGAGTAGGCTGAAGATTTTA-GATCTTG
1 TCTCCCTAAAGTTGTAGTGAAGCAGACTGAAGA--CTACGATCTTG
* * * * * ** *
862016 TCTCCCTGAAGTTGCAGTGGAGCAGA-TCAAAAACGGCAAATCTTG
1 TCTCCCTAAAGTTGTAGTGAAGCAGACT-GAAGACTAC-GATCTTG
* * * * * * * *
862061 TCTTCCTGAAGTTGTAGTGAAGCAGATTTAAG-CCACCATCCTA
1 TCTCCCTAAAGTTGTAGTGAAGCAGACTGAAGACTACGATCTTG
* * * * *
862104 TCTCTCTAAATTTGTAGTGAAGTAGGCTGAAGATTGTA-GATCTTG
1 TCTCCCTAAAGTTGTAGTGAAGCAGACTGAAGA--CTACGATCTTG
* * *
862149 TCTCCCTAAAGTTGTAGTGCAGCA-AATCGAAGACAACGAATCTTG
1 TCTCCCTAAAGTTGTAGTGAAGCAGACT-GAAGACTACG-ATCTTG
* * * * * * * * *
862194 TCTTCCTTAAGTTGCAGTGAAGCAGATTTAAG-CCACCATCCTA
1 TCTCCCTAAAGTTGTAGTGAAGCAGACTGAAGACTACGATCTTG
* * * * *
862237 TCTCTCTAAATTTGTAGTGAAGTAGGCTGAAGATTGTA-GATCTTG
1 TCTCCCTAAAGTTGTAGTGAAGCAGACTGAAGA--CTACGATCTTG
* * *
862282 TCTCCCTAAAGTTGTAGTGCAGCA-AATCGAAGACAACGAATCTTG
1 TCTCCCTAAAGTTGTAGTGAAGCAGACT-GAAGACTACG-ATCTTG
* * * * * * * * *
862327 TCTTCCTTAAGTTGCAGTGAAGCAGATTTAAG-CCACCATCCTA
1 TCTCCCTAAAGTTGTAGTGAAGCAGACTGAAGACTACGATCTTG
*
862370 TCTCCCT-AAGTTGTAGTGGA-CTAGACTGAAGATCGTA-GATCTTG
1 TCTCCCTAAAGTTGTAGTGAAGC-AGACTGAAGA-C-TACGATCTTG
* * * *
862414 CCTCCCTGAAGTTGCAGTGGAGCAGA
1 TCTCCCTAAAGTTGTAGTGAAGCAGA
862440 TCAAAGACGG
Statistics
Matches: 306, Mismatches: 94, Indels: 48
0.68 0.21 0.11
Matches are distributed among these distances:
41 1 0.00
42 18 0.06
43 67 0.22
44 24 0.08
45 188 0.61
46 8 0.03
ACGTcount: A:0.28, C:0.20, G:0.22, T:0.30
Consensus pattern (44 bp):
TCTCCCTAAAGTTGTAGTGAAGCAGACTGAAGACTACGATCTTG
Found at i:862840 original size:45 final size:43
Alignment explanation
Indices: 862725--862854 Score: 120
Period size: 45 Copynumber: 3.0 Consensus size: 43
862715 ACCTTATCCC
* * * * * *
862725 CCTGAAATTGCAGTGGGGCAGGTTAAAGTTATGAGTCCTATCT
1 CCTGAAATTGCAGTGGAGCAGGTTGAAGATACGAATCTTATCT
*
862768 CCTTGAAATTGCAGTGGAAC-GGATTGAAGATAGCGAATCTTATCT
1 CC-TGAAATTGCAGTGGAGCAGG-TTGAAGATA-CGAATCTTATCT
* *
862813 CTCTGAAATTGCAGTAGAGCAGGTTGAAGTTAC-AAGTCTTAT
1 C-CTGAAATTGCAGTGGAGCAGGTTGAAGATACGAA-TCTTAT
862855 GTCCCTAAAG
Statistics
Matches: 71, Mismatches: 10, Indels: 11
0.77 0.11 0.12
Matches are distributed among these distances:
43 6 0.08
44 29 0.41
45 33 0.46
46 3 0.04
ACGTcount: A:0.29, C:0.15, G:0.25, T:0.30
Consensus pattern (43 bp):
CCTGAAATTGCAGTGGAGCAGGTTGAAGATACGAATCTTATCT
Found at i:862873 original size:89 final size:89
Alignment explanation
Indices: 862717--862914 Score: 202
Period size: 89 Copynumber: 2.2 Consensus size: 89
862707 AGCTATAAAC
* * * * ** * *
862717 CTTATCCCCCTGAAATTGCAGTGGGGCAGGTTAAAGTTATGAGTCCTATCTCCTTGAAATTGCAG
1 CTTATCTCTCTGAAATTGCAGTAGAGCAGGTTAAAGTTACAAGTCCTATCTCCCTGAAATGGCAG
* * *
862782 TGGAACGGATTGAAGATAGC-GAAT
66 TGGAACAGACTGAAGAAAGCAG-AT
* * * *
862806 CTTATCTCTCTGAAATTGCAGTAGAGCAGGTTGAAGTTACAAGTCTTATGTCCCT-AAAGTGGTA
1 CTTATCTCTCTGAAATTGCAGTAGAGCAGGTTAAAGTTACAAGTCCTATCTCCCTGAAA-TGGCA
* *
862870 GTGGAGCAGACTGAAGAAAGCAGGT
65 GTGGAACAGACTGAAGAAAGCAGAT
*
862895 CTTATCTCTTTGAAATTGCA
1 CTTATCTCTCTGAAATTGCA
862915 ATGGAACAAA
Statistics
Matches: 89, Mismatches: 18, Indels: 4
0.80 0.16 0.04
Matches are distributed among these distances:
88 3 0.03
89 85 0.96
90 1 0.01
ACGTcount: A:0.29, C:0.17, G:0.25, T:0.29
Consensus pattern (89 bp):
CTTATCTCTCTGAAATTGCAGTAGAGCAGGTTAAAGTTACAAGTCCTATCTCCCTGAAATGGCAG
TGGAACAGACTGAAGAAAGCAGAT
Found at i:866495 original size:18 final size:18
Alignment explanation
Indices: 866474--866518 Score: 63
Period size: 18 Copynumber: 2.5 Consensus size: 18
866464 TGGGCATATA
*
866474 GGCCACATGGGCGTGTGG
1 GGCCACACGGGCGTGTGG
*
866492 GGCCACACGGGTGTGTGG
1 GGCCACACGGGCGTGTGG
*
866510 GTCCACACG
1 GGCCACACG
866519 AGCATGTGAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.13, C:0.27, G:0.44, T:0.16
Consensus pattern (18 bp):
GGCCACACGGGCGTGTGG
Found at i:870009 original size:6 final size:6
Alignment explanation
Indices: 869998--870025 Score: 56
Period size: 6 Copynumber: 4.7 Consensus size: 6
869988 TAATTTAGCC
869998 ATTTTT ATTTTT ATTTTT ATTTTT ATTT
1 ATTTTT ATTTTT ATTTTT ATTTTT ATTT
870026 ACTAATTTTT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.18, C:0.00, G:0.00, T:0.82
Consensus pattern (6 bp):
ATTTTT
Found at i:873785 original size:11 final size:10
Alignment explanation
Indices: 873726--873789 Score: 56
Period size: 11 Copynumber: 6.0 Consensus size: 10
873716 TACTTTTCCA
873726 TTCTTTTTCT
1 TTCTTTTTCT
873736 TTCCCTTTTTCT
1 TT--CTTTTTCT
* *
873748 TTCATTTCTAT
1 TTC-TTTTTCT
* *
873759 TTCGTTTTCA
1 TTCTTTTTCT
873769 TTCTTTGTTCT
1 TTCTTT-TTCT
873780 TTCTTTTTCT
1 TTCTTTTTCT
873790 ATTTTGTTTC
Statistics
Matches: 42, Mismatches: 8, Indels: 8
0.72 0.14 0.14
Matches are distributed among these distances:
10 15 0.36
11 17 0.40
12 10 0.24
ACGTcount: A:0.05, C:0.22, G:0.03, T:0.70
Consensus pattern (10 bp):
TTCTTTTTCT
Found at i:879382 original size:25 final size:25
Alignment explanation
Indices: 879353--879402 Score: 82
Period size: 25 Copynumber: 2.0 Consensus size: 25
879343 GAAAAAGAAA
*
879353 GAATATGGTGAGAGGGGAAGAAGAT
1 GAATATAGTGAGAGGGGAAGAAGAT
*
879378 GAATATAGTGAGAGGGGAGGAAGAT
1 GAATATAGTGAGAGGGGAAGAAGAT
879403 TTTTTGGAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.40, C:0.00, G:0.44, T:0.16
Consensus pattern (25 bp):
GAATATAGTGAGAGGGGAAGAAGAT
Found at i:884173 original size:17 final size:17
Alignment explanation
Indices: 884140--884188 Score: 50
Period size: 17 Copynumber: 2.9 Consensus size: 17
884130 ATATTTGAGC
*
884140 ATTGATTTTG-AATTTAA
1 ATTGAATTTGTAA-TTAA
884157 ATTGAATTTGTAATT-A
1 ATTGAATTTGTAATTAA
884173 ATCTGAATTT-TAATTA
1 AT-TGAATTTGTAATTA
884189 TTAACTGTTA
Statistics
Matches: 28, Mismatches: 1, Indels: 6
0.80 0.03 0.17
Matches are distributed among these distances:
16 8 0.29
17 18 0.64
18 2 0.07
ACGTcount: A:0.37, C:0.02, G:0.10, T:0.51
Consensus pattern (17 bp):
ATTGAATTTGTAATTAA
Found at i:884777 original size:18 final size:17
Alignment explanation
Indices: 884754--884865 Score: 71
Period size: 18 Copynumber: 6.2 Consensus size: 17
884744 TAAATAAAAG
*
884754 TACTGAATGACTGACTGT
1 TACTGAATAACTGA-TGT
*
884772 TACTGAATAAATGATCGT
1 TACTGAATAACTGAT-GT
*
884790 TACTGAATAACTGATTGC
1 TACTGAATAACTGA-TGT
** * *
884808 TACTGAGCAAATGATTAT
1 TACTGAATAACTGA-TGT
* * *
884826 TACTGAATAAATAATTGG
1 TACTGAATAACTGA-TGT
*
884844 TACTGAATAATTGAATGT
1 TACTGAATAACTG-ATGT
884862 TACT
1 TACT
884866 AAATGAAACT
Statistics
Matches: 74, Mismatches: 17, Indels: 6
0.76 0.18 0.06
Matches are distributed among these distances:
17 1 0.01
18 71 0.96
19 2 0.03
ACGTcount: A:0.37, C:0.12, G:0.17, T:0.35
Consensus pattern (17 bp):
TACTGAATAACTGATGT
Found at i:884794 original size:36 final size:36
Alignment explanation
Indices: 884754--884835 Score: 101
Period size: 36 Copynumber: 2.3 Consensus size: 36
884744 TAAATAAAAG
* * * *
884754 TACTGAATGACTGACTGTTACTGAATAAATGATCGT
1 TACTGAATAACTGACTGCTACTGAACAAATGATCAT
* * *
884790 TACTGAATAACTGATTGCTACTGAGCAAATGATTAT
1 TACTGAATAACTGACTGCTACTGAACAAATGATCAT
884826 TACTGAATAA
1 TACTGAATAA
884836 ATAATTGGTA
Statistics
Matches: 39, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
36 39 1.00
ACGTcount: A:0.37, C:0.13, G:0.17, T:0.33
Consensus pattern (36 bp):
TACTGAATAACTGACTGCTACTGAACAAATGATCAT
Found at i:884865 original size:36 final size:36
Alignment explanation
Indices: 884772--884865 Score: 100
Period size: 36 Copynumber: 2.6 Consensus size: 36
884762 GACTGACTGT
* *
884772 TACTGAATAAATG-ATCGTTACTGAATAACTGATTGC
1 TACTGAATAAATGAAT-GTTACTGAATAAATAATTGC
** * * *
884808 TACTGAGCAAATGATTATTACTGAATAAATAATTGG
1 TACTGAATAAATGAATGTTACTGAATAAATAATTGC
*
884844 TACTGAATAATTGAATGTTACT
1 TACTGAATAAATGAATGTTACT
884866 AAATGAAACT
Statistics
Matches: 45, Mismatches: 12, Indels: 2
0.76 0.20 0.03
Matches are distributed among these distances:
36 44 0.98
37 1 0.02
ACGTcount: A:0.38, C:0.11, G:0.16, T:0.35
Consensus pattern (36 bp):
TACTGAATAAATGAATGTTACTGAATAAATAATTGC
Found at i:894597 original size:24 final size:24
Alignment explanation
Indices: 894546--894665 Score: 179
Period size: 24 Copynumber: 5.0 Consensus size: 24
894536 GCTTTATCAT
*
894546 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
* *
894571 ATAACTGGGACAAAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
894595 ATAACTGGGGCATAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
*
894619 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
894643 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
894666 TCACTTCCTC
Statistics
Matches: 88, Mismatches: 6, Indels: 3
0.91 0.06 0.03
Matches are distributed among these distances:
24 76 0.86
25 12 0.14
ACGTcount: A:0.28, C:0.22, G:0.21, T:0.29
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:894748 original size:20 final size:20
Alignment explanation
Indices: 894725--894781 Score: 96
Period size: 20 Copynumber: 2.9 Consensus size: 20
894715 ATCATTTTCC
894725 TATCATACATATCATGTGCA
1 TATCATACATATCATGTGCA
*
894745 TATCATACATGTCATGTGCA
1 TATCATACATATCATGTGCA
*
894765 TATCATACATACCATGT
1 TATCATACATATCATGT
894782 TTATCAAAAT
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 34 1.00
ACGTcount: A:0.33, C:0.21, G:0.11, T:0.35
Consensus pattern (20 bp):
TATCATACATATCATGTGCA
Found at i:894850 original size:25 final size:25
Alignment explanation
Indices: 894818--894865 Score: 78
Period size: 25 Copynumber: 1.9 Consensus size: 25
894808 ATATATAAAC
* *
894818 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGTAAAACGGTCATTTTTA
894843 CCTAGGGGTAAAACGGTCATTTT
1 CCTAGGGGTAAAACGGTCATTTT
894866 CATGTTATAA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.25, C:0.15, G:0.25, T:0.35
Consensus pattern (25 bp):
CCTAGGGGTAAAACGGTCATTTTTA
Found at i:895301 original size:8 final size:8
Alignment explanation
Indices: 895288--895323 Score: 54
Period size: 8 Copynumber: 4.5 Consensus size: 8
895278 AAATGCCAGA
895288 ATTTCGGC
1 ATTTCGGC
895296 ATTTCGGC
1 ATTTCGGC
895304 ATTTCGGC
1 ATTTCGGC
* *
895312 TTTTCGGT
1 ATTTCGGC
895320 ATTT
1 ATTT
895324 AGTGCTTTAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
8 25 1.00
ACGTcount: A:0.11, C:0.19, G:0.22, T:0.47
Consensus pattern (8 bp):
ATTTCGGC
Found at i:902895 original size:24 final size:24
Alignment explanation
Indices: 902858--903011 Score: 227
Period size: 24 Copynumber: 6.4 Consensus size: 24
902848 CTGTAGGCCT
*
902858 AGCCTCTTTTAATAACTGGGGCAAA
1 AGCC-CTTTTAATAACTGGGGCATA
*
902883 AGCCCTTTTAATAACTAGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
*
902907 AGCCCTCTTAATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
*
902931 AGCCCTCTTAATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
*
902955 AGCCCTTTTAATAACTAGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
* * *
902979 AGCCCTTTTGATAATTGAGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
903003 AGCCCTTTT
1 AGCCCTTTT
903012 TCACTTCCTC
Statistics
Matches: 119, Mismatches: 10, Indels: 1
0.92 0.08 0.01
Matches are distributed among these distances:
24 115 0.97
25 4 0.03
ACGTcount: A:0.30, C:0.22, G:0.19, T:0.29
Consensus pattern (24 bp):
AGCCCTTTTAATAACTGGGGCATA
Found at i:903086 original size:20 final size:20
Alignment explanation
Indices: 903061--903127 Score: 98
Period size: 20 Copynumber: 3.4 Consensus size: 20
903051 TTATGAACAC
* *
903061 ATCATGTGCCTTTCATACAT
1 ATCATGTGCATATCATACAT
903081 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
903101 GTCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
903121 ACCATGT
1 ATCATGT
903128 TTATCAAAAC
Statistics
Matches: 42, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 42 1.00
ACGTcount: A:0.30, C:0.22, G:0.12, T:0.36
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:905602 original size:143 final size:143
Alignment explanation
Indices: 905415--905781 Score: 450
Period size: 143 Copynumber: 2.6 Consensus size: 143
905405 CCTCCATCTA
* * * * * *
905415 TTTGAGTTAGTTGAGTTAAGCACGTAACTCTAAAATAGCTCATGGATCTACGTTCCCAACTGATA
1 TTTGAGTTTGTTGAGTTAAGCTCGCAACTCCAAAATAGCTCATGGACCTACGTTCCCAGCTGATA
* * *
905480 AACTCCCACACAACTCATGGAAATACATTCCCAATTGATGTTCAAAGGTTAGCTAAATTAAGCTC
66 AACTCCAACACAACTCACGGAAATACATTCCCAATTGATGTTCAAAAGTTAGCTAAATTAAGCTC
*
905545 GCAACCT-AGATTC
131 ACAACCTGA-ATTC
* *
905558 TTTGAGTTTGTTGAGTTAAGCTCGCAACTCCAAAATAGCTCATGGACCTACATTCCCAGCTAATA
1 TTTGAGTTTGTTGAGTTAAGCTCGCAACTCCAAAATAGCTCATGGACCTACGTTCCCAGCTGATA
* ** ** * * * *
905623 AACTCTAACACAACTCACGGACCTATGTTCCCAATTGCTGTTTAAAAGTTAGCTAAGTTAAGCTT
66 AACTCCAACACAACTCACGGAAATACATTCCCAATTGATGTTCAAAAGTTAGCTAAATTAAGCTC
905688 ACAACCTGAATTC
131 ACAACCTGAATTC
* * * * * *
905701 TTTGAGTTTGCTGA-TATAAGCTGGCAACTCCGAAATAGCTTATAGACCTATGTTCCCAGCTGAT
1 TTTGAGTTTGTTGAGT-TAAGCTCGCAACTCCAAAATAGCTCATGGACCTACGTTCCCAGCTGAT
*
905765 AAACTCCGACACAACTC
65 AAACTCCAACACAACTC
905782 GCTGACCTAC
Statistics
Matches: 191, Mismatches: 31, Indels: 4
0.85 0.14 0.02
Matches are distributed among these distances:
142 1 0.01
143 189 0.99
144 1 0.01
ACGTcount: A:0.32, C:0.23, G:0.16, T:0.29
Consensus pattern (143 bp):
TTTGAGTTTGTTGAGTTAAGCTCGCAACTCCAAAATAGCTCATGGACCTACGTTCCCAGCTGATA
AACTCCAACACAACTCACGGAAATACATTCCCAATTGATGTTCAAAAGTTAGCTAAATTAAGCTC
ACAACCTGAATTC
Found at i:905810 original size:143 final size:143
Alignment explanation
Indices: 905415--905907 Score: 429
Period size: 143 Copynumber: 3.4 Consensus size: 143
905405 CCTCCATCTA
* * * * * * * * * *
905415 TTTGAGTTAGTTGAGTTAAGCACGTAACTCTAAAATAGCTCATGGATCTACGTTCCCAACTGATA
1 TTTGAGTTTGCTGAGTTAAGCTCGCAACTCCAAAATAGCTCATAGACCTACATTCCCAGCTAATA
* * ** * * * * * * *
905480 AACTCCCACACAACTCATGGAAATACATTCCCAATTGATGTTCAAAGGTTAGCTAAATTAAGCTC
66 AACTCCAACACAACTCACGGACCTACGTTCCCAACTAATGTTTAAAAGTTAGCTAAGTTAAGCTT
*
905545 GCAACCT-AGATTC
131 ACAACCTGA-ATTC
* *
905558 TTTGAGTTTGTTGAGTTAAGCTCGCAACTCCAAAATAGCTCATGGACCTACATTCCCAGCTAATA
1 TTTGAGTTTGCTGAGTTAAGCTCGCAACTCCAAAATAGCTCATAGACCTACATTCCCAGCTAATA
* * * **
905623 AACTCTAACACAACTCACGGACCTATGTTCCCAATTGCTGTTTAAAAGTTAGCTAAGTTAAGCTT
66 AACTCCAACACAACTCACGGACCTACGTTCCCAACTAATGTTTAAAAGTTAGCTAAGTTAAGCTT
905688 ACAACCTGAATTC
131 ACAACCTGAATTC
* * * ** *
905701 TTTGAGTTTGCTGA-TATAAGCTGGCAACTCCGAAATAGCTTATAGACCTATGTTCCCAGCTGAT
1 TTTGAGTTTGCTGAGT-TAAGCTCGCAACTCCAAAATAGCTCATAGACCTACATTCCCAGCTAAT
* * * * * * * * **
905765 AAACTCCGACACAACTCGCTGACCTACGTTTCGC-ACTAATTTTTAAAGGTTAACTGAGTTATTC
65 AAACTCCAACACAACTCACGGACCTACG-TTCCCAACTAATGTTTAAAAGTTAGCTAAGTTAAGC
* *
905829 TTACAAACTGAATTT
129 TTACAACCTGAATTC
* * * * * *
905844 TTTGAGTTTGCTAAGTTAA-CTTCACAACTCCGAAACAACTCGT-GAACCTACATTCCCAGCTAA
1 TTTGAGTTTGCTGAGTTAAGC-TCGCAACTCCAAAATAGCTCATAG-ACCTACATTCCCAGCTAA
905907 T
64 T
905908 GTTTAAAGGT
Statistics
Matches: 288, Mismatches: 56, Indels: 12
0.81 0.16 0.03
Matches are distributed among these distances:
142 3 0.01
143 279 0.97
144 6 0.02
ACGTcount: A:0.31, C:0.23, G:0.15, T:0.30
Consensus pattern (143 bp):
TTTGAGTTTGCTGAGTTAAGCTCGCAACTCCAAAATAGCTCATAGACCTACATTCCCAGCTAATA
AACTCCAACACAACTCACGGACCTACGTTCCCAACTAATGTTTAAAAGTTAGCTAAGTTAAGCTT
ACAACCTGAATTC
Found at i:907827 original size:41 final size:43
Alignment explanation
Indices: 907729--907830 Score: 120
Period size: 41 Copynumber: 2.4 Consensus size: 43
907719 AATGCCAACA
* * *
907729 TCCCAGACGTGGTCTTACATGAAATCACATATCGATACCATTG
1 TCCCAGACATGGTCTTACACGAAATCAAATATCGATACCATTG
* * *
907772 TCCCAGACAGGGTCTTATACGAAA-CAAATA-CGATGCCGA-TG
1 TCCCAGACATGGTCTTACACGAAATCAAATATCGATACC-ATTG
907813 TCCCAGACATGGTCTTAC
1 TCCCAGACATGGTCTTAC
907831 TCATAACCAT
Statistics
Matches: 50, Mismatches: 8, Indels: 4
0.81 0.13 0.06
Matches are distributed among these distances:
41 24 0.48
42 6 0.12
43 20 0.40
ACGTcount: A:0.30, C:0.26, G:0.19, T:0.25
Consensus pattern (43 bp):
TCCCAGACATGGTCTTACACGAAATCAAATATCGATACCATTG
Found at i:916198 original size:17 final size:18
Alignment explanation
Indices: 916172--916205 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
916162 CTTAGTCAAT
916172 TTTTTCTTT-CCCTTAGC
1 TTTTTCTTTCCCCTTAGC
*
916189 TTTTTGTTTCCCCTTAG
1 TTTTTCTTTCCCCTTAG
916206 AGGATGAGGG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 8 0.53
18 7 0.47
ACGTcount: A:0.06, C:0.26, G:0.09, T:0.59
Consensus pattern (18 bp):
TTTTTCTTTCCCCTTAGC
Found at i:916994 original size:17 final size:18
Alignment explanation
Indices: 916958--916996 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
916948 AAAATTATTT
*
916958 TTTTTACGAAAACCTTAG
1 TTTTTACGAAAACCTAAG
*
916976 TTTTTAGGAAAACC-AAG
1 TTTTTACGAAAACCTAAG
916993 TTTT
1 TTTT
916997 GATGAGTTAC
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
17 6 0.32
18 13 0.68
ACGTcount: A:0.33, C:0.13, G:0.13, T:0.41
Consensus pattern (18 bp):
TTTTTACGAAAACCTAAG
Found at i:921422 original size:147 final size:147
Alignment explanation
Indices: 921148--921422 Score: 444
Period size: 147 Copynumber: 1.9 Consensus size: 147
921138 AACGAGAAGG
*
921148 TGGTGGAGAAAAGAAAGGAATAGAGGGAACTGCAGTCGGGATTGTGGGGACTAAGGGAATGCTTG
1 TGGTGGAGAAAAGAAAGGAATAGAGGGAACTGCAATCGGGATTGTGGGGACTAAGGGAATGCTTG
**
921213 GCAGAGGGGGCAGTCCTCTTGGCAATGTGGTAGGAAGTGGAGGAAGCGCCCCAGGGTTTGGGAGA
66 GCAGAGGGGGCAGTCCTCTTGGCAATGTGGTAGGAAGTGGAGGAAGCGCCCCAGGGCATGGGAGA
921278 TTACGGAAAGATGGCAA
131 TTACGGAAAGATGGCAA
* * * * * *
921295 TGGTGGAGAAGAGAAAGGAATAGGGGGGATTGCAATTGGGATTGTGGGGACTGAGGGAATGCTTG
1 TGGTGGAGAAAAGAAAGGAATAGAGGGAACTGCAATCGGGATTGTGGGGACTAAGGGAATGCTTG
*
921360 GCAGAGGGGGCAGTCCTGTTGGCAATGTGGTAGGAAGTGGAGGAAGCGCCCC-GGGCCATGGGA
66 GCAGAGGGGGCAGTCCTCTTGGCAATGTGGTAGGAAGTGGAGGAAGCGCCCCAGGG-CATGGGA
921423 ATGATGGTCG
Statistics
Matches: 117, Mismatches: 10, Indels: 2
0.91 0.08 0.02
Matches are distributed among these distances:
146 3 0.03
147 114 0.97
ACGTcount: A:0.27, C:0.12, G:0.44, T:0.18
Consensus pattern (147 bp):
TGGTGGAGAAAAGAAAGGAATAGAGGGAACTGCAATCGGGATTGTGGGGACTAAGGGAATGCTTG
GCAGAGGGGGCAGTCCTCTTGGCAATGTGGTAGGAAGTGGAGGAAGCGCCCCAGGGCATGGGAGA
TTACGGAAAGATGGCAA
Found at i:934274 original size:22 final size:21
Alignment explanation
Indices: 934230--934275 Score: 67
Period size: 21 Copynumber: 2.1 Consensus size: 21
934220 TATTTACTAA
934230 TTAATTCCTATAATAGATGTT
1 TTAATTCCTATAATAGATGTT
934251 TTAATTCCTTTATAATA-ATGTT
1 TTAATTCC--TATAATAGATGTT
934273 TTA
1 TTA
934276 GTTAAGTAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
21 8 0.35
22 8 0.35
23 7 0.30
ACGTcount: A:0.33, C:0.09, G:0.07, T:0.52
Consensus pattern (21 bp):
TTAATTCCTATAATAGATGTT
Found at i:934441 original size:13 final size:13
Alignment explanation
Indices: 934405--934431 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
934395 TACCAAACAC
934405 TCAAATCAATTAA
1 TCAAATCAATTAA
934418 TCAAATCAATTAA
1 TCAAATCAATTAA
934431 T
1 T
934432 AGAATTAATT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.52, C:0.15, G:0.00, T:0.33
Consensus pattern (13 bp):
TCAAATCAATTAA
Found at i:935448 original size:15 final size:15
Alignment explanation
Indices: 935428--935457 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
935418 TGTAATACCA
*
935428 AAGAAATTGGGTTAG
1 AAGAAATTGAGTTAG
935443 AAGAAATTGAGTTAG
1 AAGAAATTGAGTTAG
935458 TAAAATTAAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.43, C:0.00, G:0.30, T:0.27
Consensus pattern (15 bp):
AAGAAATTGAGTTAG
Found at i:936531 original size:63 final size:63
Alignment explanation
Indices: 936461--936591 Score: 172
Period size: 63 Copynumber: 2.1 Consensus size: 63
936451 TGGTAAGTCG
* * *
936461 TGTAACTCACTGTTTGGGAAATAGAGTCACATGAGCCAAAGGCATAGGCATGTGTCCAAACCA
1 TGTAACTCACTGTTTGGGAAATAGAGTCACACGAGCCAAAGACATAGGCATCTGTCCAAACCA
* * * * * * *
936524 TGTAACTCACTGTTTTGGAATTAGATTCATACGGGCCAGAGACATAGGCATCTGTCCAAGCCA
1 TGTAACTCACTGTTTGGGAAATAGAGTCACACGAGCCAAAGACATAGGCATCTGTCCAAACCA
936587 TGTAA
1 TGTAA
936592 GAGAATTTTT
Statistics
Matches: 58, Mismatches: 10, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
63 58 1.00
ACGTcount: A:0.31, C:0.21, G:0.23, T:0.25
Consensus pattern (63 bp):
TGTAACTCACTGTTTGGGAAATAGAGTCACACGAGCCAAAGACATAGGCATCTGTCCAAACCA
Found at i:938408 original size:15 final size:15
Alignment explanation
Indices: 938384--938413 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
938374 ATACTGCAAT
938384 GCACTACACCGCACC
1 GCACTACACCGCACC
*
938399 GCACTGCACCGCACC
1 GCACTACACCGCACC
938414 CCACCAACCA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.23, C:0.53, G:0.17, T:0.07
Consensus pattern (15 bp):
GCACTACACCGCACC
Found at i:940819 original size:17 final size:16
Alignment explanation
Indices: 940799--940832 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
940789 ATATATATAT
940799 ATATAACAAAAGAAAGA
1 ATATAA-AAAAGAAAGA
*
940816 ATATAAATAAGAAAGA
1 ATATAAAAAAGAAAGA
940832 A
1 A
940833 ACAGATCGAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 10 0.62
17 6 0.38
ACGTcount: A:0.71, C:0.03, G:0.12, T:0.15
Consensus pattern (16 bp):
ATATAAAAAAGAAAGA
Found at i:940825 original size:21 final size:20
Alignment explanation
Indices: 940795--940833 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 20
940785 TTTTATATAT
*
940795 ATATATATAACAAAAGAAAGA
1 ATATAAATAA-AAAAGAAAGA
*
940816 ATATAAATAAGAAAGAAA
1 ATATAAATAAAAAAGAAA
940834 CAGATCGAAA
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 7 0.44
21 9 0.56
ACGTcount: A:0.69, C:0.03, G:0.10, T:0.18
Consensus pattern (20 bp):
ATATAAATAAAAAAGAAAGA
Found at i:941625 original size:8 final size:8
Alignment explanation
Indices: 941612--941639 Score: 56
Period size: 8 Copynumber: 3.5 Consensus size: 8
941602 TGAATATATA
941612 TGTGGAAT
1 TGTGGAAT
941620 TGTGGAAT
1 TGTGGAAT
941628 TGTGGAAT
1 TGTGGAAT
941636 TGTG
1 TGTG
941640 CAAATATGAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 20 1.00
ACGTcount: A:0.21, C:0.00, G:0.39, T:0.39
Consensus pattern (8 bp):
TGTGGAAT
Found at i:941796 original size:25 final size:23
Alignment explanation
Indices: 941768--941858 Score: 105
Period size: 22 Copynumber: 4.0 Consensus size: 23
941758 CTCTGATAAT
*
941768 TAGCACGTTAGTGCTCTCTGATTA
1 TAGCACATTAGTGCTCTCTG-TTA
*
941792 CTAGCACATTAGTGCTTTCTGTT-
1 -TAGCACATTAGTGCTCTCTGTTA
*
941815 TAGCACATTCGTGCTCTCTG-TA
1 TAGCACATTAGTGCTCTCTGTTA
* *
941837 TAGCACTTTAGTGTTCTCTGTT
1 TAGCACATTAGTGCTCTCTGTT
941859 CATTAGTGCA
Statistics
Matches: 57, Mismatches: 7, Indels: 6
0.81 0.10 0.09
Matches are distributed among these distances:
21 1 0.02
22 35 0.61
23 1 0.02
24 2 0.04
25 18 0.32
ACGTcount: A:0.18, C:0.22, G:0.19, T:0.42
Consensus pattern (23 bp):
TAGCACATTAGTGCTCTCTGTTA
Found at i:941820 original size:47 final size:44
Alignment explanation
Indices: 941767--941858 Score: 114
Period size: 47 Copynumber: 2.0 Consensus size: 44
941757 TCTCTGATAA
*
941767 TTAGCACGTTAGTGCTCTCTGATTACTAGCACATTAGTGCTT-TCTGT
1 TTAGCACATTAGTGCTCTCTG--TA-TAGCACATTAGTG-TTCTCTGT
* *
941814 TTAGCACATTCGTGCTCTCTGTATAGCACTTTAGTGTTCTCTGT
1 TTAGCACATTAGTGCTCTCTGTATAGCACATTAGTGTTCTCTGT
941858 T
1 T
941859 CATTAGTGCA
Statistics
Matches: 41, Mismatches: 3, Indels: 5
0.84 0.06 0.10
Matches are distributed among these distances:
43 2 0.05
44 18 0.44
45 2 0.05
47 19 0.46
ACGTcount: A:0.17, C:0.22, G:0.18, T:0.42
Consensus pattern (44 bp):
TTAGCACATTAGTGCTCTCTGTATAGCACATTAGTGTTCTCTGT
Found at i:945428 original size:25 final size:26
Alignment explanation
Indices: 945391--945441 Score: 77
Period size: 25 Copynumber: 2.0 Consensus size: 26
945381 ATTAAGGCAG
*
945391 TTTAACATTAAAATATCTAATATATT
1 TTTAACATTAAAATATATAATATATT
*
945417 TTTAAC-TTAAAATATATATTATATT
1 TTTAACATTAAAATATATAATATATT
945442 ATATTTACTT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 17 0.74
26 6 0.26
ACGTcount: A:0.45, C:0.06, G:0.00, T:0.49
Consensus pattern (26 bp):
TTTAACATTAAAATATATAATATATT
Found at i:946834 original size:31 final size:31
Alignment explanation
Indices: 946799--946863 Score: 94
Period size: 31 Copynumber: 2.1 Consensus size: 31
946789 AAAGCTCGTT
* *
946799 TGGTTCACCCATGTGGGCCTACACACCCGTG
1 TGGTTCACCCATGTGCGCCCACACACCCGTG
* *
946830 TGGTTCACCCGTGTGCGCCCACACTCCCGTG
1 TGGTTCACCCATGTGCGCCCACACACCCGTG
946861 TGG
1 TGG
946864 CCCACACGAC
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.12, C:0.37, G:0.28, T:0.23
Consensus pattern (31 bp):
TGGTTCACCCATGTGCGCCCACACACCCGTG
Found at i:946868 original size:17 final size:18
Alignment explanation
Indices: 946837--946870 Score: 61
Period size: 17 Copynumber: 1.9 Consensus size: 18
946827 GTGTGGTTCA
946837 CCCGTGTGCGCCCACACT
1 CCCGTGTGCGCCCACACT
946855 CCCGTGTG-GCCCACAC
1 CCCGTGTGCGCCCACAC
946871 GACCCATTTG
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 8 0.50
18 8 0.50
ACGTcount: A:0.12, C:0.50, G:0.24, T:0.15
Consensus pattern (18 bp):
CCCGTGTGCGCCCACACT
Found at i:955020 original size:22 final size:22
Alignment explanation
Indices: 954995--955060 Score: 96
Period size: 22 Copynumber: 3.0 Consensus size: 22
954985 CACCGATTAC
*
954995 TAGCACATTAGTGCTCTTTGTT
1 TAGCACATTAGTGCTCTCTGTT
* *
955017 TAGCACATTCGTGCTCTCTGTA
1 TAGCACATTAGTGCTCTCTGTT
*
955039 TAGCACTTTAGTGCTCTCTGTT
1 TAGCACATTAGTGCTCTCTGTT
955061 CATTAGATCA
Statistics
Matches: 38, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 38 1.00
ACGTcount: A:0.17, C:0.23, G:0.18, T:0.42
Consensus pattern (22 bp):
TAGCACATTAGTGCTCTCTGTT
Found at i:960417 original size:15 final size:15
Alignment explanation
Indices: 960397--960426 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
960387 CCTTGTTTAG
960397 AATACATATATTCAA
1 AATACATATATTCAA
*
960412 AATACATATGTTCAA
1 AATACATATATTCAA
960427 TGTTAATATA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.50, C:0.13, G:0.03, T:0.33
Consensus pattern (15 bp):
AATACATATATTCAA
Found at i:962908 original size:21 final size:21
Alignment explanation
Indices: 962878--962919 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
962868 TTCAAATATT
962878 ATAATAAAAAAATTTTAAATA
1 ATAATAAAAAAATTTTAAATA
* * *
962899 ATAATTAAAACATTTTTAATA
1 ATAATAAAAAAATTTTAAATA
962920 TATTCAATAT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.60, C:0.02, G:0.00, T:0.38
Consensus pattern (21 bp):
ATAATAAAAAAATTTTAAATA
Found at i:967440 original size:26 final size:26
Alignment explanation
Indices: 967404--967456 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
967394 TGTTAAATCC
967404 GAGTATGAGCCTCACAAGTAGAACGG
1 GAGTATGAGCCTCACAAGTAGAACGG
967430 GAGTATGAGCCTCACAAGTAGAACGG
1 GAGTATGAGCCTCACAAGTAGAACGG
967456 G
1 G
967457 TGTACCAAAT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.34, C:0.19, G:0.32, T:0.15
Consensus pattern (26 bp):
GAGTATGAGCCTCACAAGTAGAACGG
Found at i:968096 original size:17 final size:17
Alignment explanation
Indices: 968074--968107 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
968064 CATTTCGAAA
*
968074 CATCCAATGGTGGATAC
1 CATCCAATAGTGGATAC
*
968091 CATCCACTAGTGGATAC
1 CATCCAATAGTGGATAC
968108 AGTTCAATAG
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.29, C:0.26, G:0.21, T:0.24
Consensus pattern (17 bp):
CATCCAATAGTGGATAC
Found at i:968740 original size:27 final size:27
Alignment explanation
Indices: 968710--968763 Score: 108
Period size: 27 Copynumber: 2.0 Consensus size: 27
968700 AGTTAGGATA
968710 ATGAAAAGGTCCAAAGAGTATCACGTG
1 ATGAAAAGGTCCAAAGAGTATCACGTG
968737 ATGAAAAGGTCCAAAGAGTATCACGTG
1 ATGAAAAGGTCCAAAGAGTATCACGTG
968764 GACTAAATTA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.41, C:0.15, G:0.26, T:0.19
Consensus pattern (27 bp):
ATGAAAAGGTCCAAAGAGTATCACGTG
Found at i:990425 original size:75 final size:74
Alignment explanation
Indices: 990334--990485 Score: 204
Period size: 70 Copynumber: 2.0 Consensus size: 74
990324 TTTATTTCGG
*
990334 TTTTCAAACAAAAATCAATTCATATTGCTAGAGGTGAATTGAGCCTCGGGTCACATGCCGAGGTA
1 TTTTCAAACAAAAATCAATT--TA---CGAGAGGTGAATTGAGCCTCGGGTCACATGCCGAGGTA
990399 TTTTC-AATT-TAT
61 TTTTCAAATTCTAT
* *
990411 TTTTC-AA-AAAAATCAATTTACGAGGGGTGAGTTGAGCCTCGGGTCACATGCCGAGGTATTTTC
1 TTTTCAAACAAAAATCAATTTACGAGAGGTGAATTGAGCCTCGGGTCACATGCCGAGGTATTTTC
990474 AAATTCTAT
66 AAATTCTAT
990483 TTT
1 TTT
990486 AATTTCTCTT
Statistics
Matches: 70, Mismatches: 3, Indels: 9
0.85 0.04 0.11
Matches are distributed among these distances:
70 40 0.57
71 4 0.06
72 6 0.09
73 2 0.03
75 11 0.16
76 2 0.03
77 5 0.07
ACGTcount: A:0.30, C:0.16, G:0.20, T:0.34
Consensus pattern (74 bp):
TTTTCAAACAAAAATCAATTTACGAGAGGTGAATTGAGCCTCGGGTCACATGCCGAGGTATTTTC
AAATTCTAT
Found at i:990679 original size:162 final size:161
Alignment explanation
Indices: 990495--990990 Score: 545
Period size: 178 Copynumber: 3.0 Consensus size: 161
990485 TAATTTCTCT
* * * **
990495 TTTCAAAAATCAACTCATATTGCGAGAGGTGGGTTGAGCCTC-AGGACATG-CTGAGGTATTTGC
1 TTTCAAAAATCAACTCATATTGCGAGAAGTGAGTTAAGCCTCAACCACATGTC-GAGGTATTTGC
* *
990558 -AAAT-TATGCTTTTCAATTTATGTGTTTCAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTT
65 AAAATCTATGATTTTCAATTTA--TGTTTC----AAAAATCAACTCATATTGCGAGAAGTGAGTT
* * *
990621 GAGCCTC-AA-GACACGTTGAGGTATTTTCAATTTATG
124 AAGCCTCGAACCACACGTCGAGGTATTTTCAATTTATG
*
990657 TTTCAAAAATCAACTCATATTGCGAGAAGTGAGTTAAGCCTCGAACCACATGTCGAGGTATTTTC
1 TTTCAAAAATCAACTCATATTGCGAGAAGTGAGTTAAGCCTC-AACCACATGTCGAGGTATTTGC
* *
990722 AAAATCTGTTATTTTCAATTTATGTTTCAAAAATCAACTCATATTGCGAGAAGTGAGTTAAGCCT
65 AAAATCTATGATTTTCAATTTATGTTTCAAAAATCAACTCATATTGCGAGAAGTGAGTTAAGCCT
*
990787 CGAACCACATGTCGAGGTATTTTCAAAATCTGTTATTTTCAATTTATG
130 CGAACCACACGTCGA-G--------------G-TATTTTCAATTTATG
* *
990835 TTTCAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGAACCACATGTCGAGGTATTTTC
1 TTTCAAAAATCAACTCATATTGCGAGAAGTGAGTTAAGCCTC-AACCACATGTCGAGGTATTTGC
* * *
990900 AAAATCTGTTATTTTCAATTTATGTTTCAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCT
65 AAAATCTATGATTTTCAATTTATGTTTCAAAAATCAACTCATATTGCGAGAAGTGAGTTAAGCCT
*
990965 CGAACCACATGTCGAGGTATTTTCAA
130 CGAACCACACGTCGAGGTATTTTCAA
990991 AATTTTTTTT
Statistics
Matches: 295, Mismatches: 16, Indels: 46
0.83 0.04 0.13
Matches are distributed among these distances:
160 36 0.12
161 2 0.01
162 55 0.19
163 2 0.01
164 22 0.07
165 5 0.02
166 13 0.04
177 2 0.01
178 158 0.54
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33
Consensus pattern (161 bp):
TTTCAAAAATCAACTCATATTGCGAGAAGTGAGTTAAGCCTCAACCACATGTCGAGGTATTTGCA
AAATCTATGATTTTCAATTTATGTTTCAAAAATCAACTCATATTGCGAGAAGTGAGTTAAGCCTC
GAACCACACGTCGAGGTATTTTCAATTTATG
Found at i:990689 original size:71 final size:73
Alignment explanation
Indices: 990590--990990 Score: 266
Period size: 89 Copynumber: 4.9 Consensus size: 73
990580 TGTTTCAAAA
* * * *
990590 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-AA-GACACGTTGAGGTATTTTCAATT
1 AAAAATCAACTCATATTGCGAGAAGTGAGTTAAGCCTCGAACCACACGTCGAGGTATTTTCAATT
990653 TATGTTTC
66 TATGTTTC
*
990661 AAAAATCAACTCATATTGCGAGAAGTGAGTTAAGCCTCGAACCACATGTCGAGGTATTTTCAAAA
1 AAAAATCAACTCATATTGCGAGAAGTGAGTTAAGCCTCGAACCACACGTCGAGGTATTTTC---A
990726 TCTGTTATTTTCAATTTATGTTTC
63 ------A-TTT------ATGTTTC
*
990750 AAAAATCAACTCATATTGCGAGAAGTGAGTTAAGCCTCGAACCACATGTCGAGGTATTTTCAAAA
1 AAAAATCAACTCATATTGCGAGAAGTGAGTTAAGCCTCGAACCACACGTCGAGGTATTTTC---A
990815 TCTGTTATTTTCAATTTATGTTTC
63 ------A-TTT------ATGTTTC
* *
990839 AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGAACCACATGTCGAGGTATTTTCAAAA
1 AAAAATCAACTCATATTGCGAGAAGTGAGTTAAGCCTCGAACCACACGTCGAGGTATTTTC---A
990904 TCTGTTATTTTCAATTTATGTTTC
63 ------A-TTT------ATGTTTC
* *
990928 AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGAACCACATGTCGAGGTATTTTCAA
1 AAAAATCAACTCATATTGCGAGAAGTGAGTTAAGCCTCGAACCACACGTCGAGGTATTTTCAA
990991 AATTTTTTTT
Statistics
Matches: 306, Mismatches: 6, Indels: 27
0.90 0.02 0.08
Matches are distributed among these distances:
71 36 0.12
72 2 0.01
73 16 0.05
76 1 0.00
80 1 0.00
82 1 0.00
83 3 0.01
86 1 0.00
89 245 0.80
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33
Consensus pattern (73 bp):
AAAAATCAACTCATATTGCGAGAAGTGAGTTAAGCCTCGAACCACACGTCGAGGTATTTTCAATT
TATGTTTC
Found at i:990793 original size:89 final size:89
Alignment explanation
Indices: 990642--991236 Score: 787
Period size: 89 Copynumber: 6.6 Consensus size: 89
990632 CACGTTGAGG
*
990642 TATTTTCAATTTATGTTTCAAAAATCAACTCATATTGCGAGAAGTGAGTTAAGCCTCGAACCACA
1 TATTTTCAATTTATGTTTCAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGAACCACA
990707 TGTCGAGGTATTTTCAAAATCTGT
66 TGTCGAGGTATTTTCAAAATCTGT
*
990731 TATTTTCAATTTATGTTTCAAAAATCAACTCATATTGCGAGAAGTGAGTTAAGCCTCGAACCACA
1 TATTTTCAATTTATGTTTCAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGAACCACA
990796 TGTCGAGGTATTTTCAAAATCTGT
66 TGTCGAGGTATTTTCAAAATCTGT
990820 TATTTTCAATTTATGTTTCAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGAACCACA
1 TATTTTCAATTTATGTTTCAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGAACCACA
990885 TGTCGAGGTATTTTCAAAATCTGT
66 TGTCGAGGTATTTTCAAAATCTGT
990909 TATTTTCAATTTATGTTTCAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGAACCACA
1 TATTTTCAATTTATGTTTCAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGAACCACA
990974 TGTCGAGGTATTTTCAAAAT-T-T
66 TGTCGAGGTATTTTCAAAATCTGT
* * *
990996 TTTTTTCAAATTTCTGTTTGTCAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCG-GCT
1 TATTTTC-AATTTATG-TT-TCAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGAAC-
*
991060 CACATG-CTGAGG-AGTTTTC-AATTCCTGTTTT
62 CACATGTC-GAGGTA-TTTTCAAAAT-CTG---T
* * * * * ***
991091 TTTTTTCAATTTGTATTTTTCAAAAAATCAACTCATATTGCGAGAGGTGATTTGGGCCTCGGGTC
1 TATTTTCAA-TT-TATGTTTC-AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGAACC
*
991156 ACATGAC-AGGGTATTTTCAAAATC---
63 ACATGTCGA-GGTATTTTCAAAATCTGT
* * * * *
991180 TACTTTTCAAATTAAGTTTCAAAAAGACCAACTCATATGGCGAGAGGTGAGTTGAGC
1 TA-TTTTCAATTTATGTTTC-AAAA-ATCAACTCATATTGCGAGAAGTGAGTTGAGC
991237 TTTGGCTCAC
Statistics
Matches: 464, Mismatches: 20, Indels: 44
0.88 0.04 0.08
Matches are distributed among these distances:
87 7 0.02
88 19 0.04
89 299 0.64
90 63 0.14
91 1 0.00
94 5 0.01
95 62 0.13
96 8 0.02
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.35
Consensus pattern (89 bp):
TATTTTCAATTTATGTTTCAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGAACCACA
TGTCGAGGTATTTTCAAAATCTGT
Found at i:994663 original size:15 final size:15
Alignment explanation
Indices: 994641--994678 Score: 58
Period size: 15 Copynumber: 2.5 Consensus size: 15
994631 TTTGATATTC
*
994641 ATAAATATTATATAT
1 ATAAATATTAAATAT
*
994656 ATATATATTAAATAT
1 ATAAATATTAAATAT
994671 ATAAATAT
1 ATAAATAT
994679 CGATAAATTT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (15 bp):
ATAAATATTAAATAT
Found at i:996750 original size:22 final size:22
Alignment explanation
Indices: 996725--996768 Score: 88
Period size: 22 Copynumber: 2.0 Consensus size: 22
996715 TATACCAATT
996725 CACTTATCATTAAGGTTTCATC
1 CACTTATCATTAAGGTTTCATC
996747 CACTTATCATTAAGGTTTCATC
1 CACTTATCATTAAGGTTTCATC
996769 AAACCAAATT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.27, C:0.23, G:0.09, T:0.41
Consensus pattern (22 bp):
CACTTATCATTAAGGTTTCATC
Found at i:998801 original size:21 final size:20
Alignment explanation
Indices: 998763--998808 Score: 56
Period size: 21 Copynumber: 2.2 Consensus size: 20
998753 AAATTGTGTG
* *
998763 TTTTGGATGAAATTGATTGA
1 TTTTGGATGAAATGGATTAA
*
998783 TTTTGTGATTAAATGGATTAA
1 TTTTG-GATGAAATGGATTAA
998804 TTTTG
1 TTTTG
998809 AATATATATA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
20 5 0.23
21 17 0.77
ACGTcount: A:0.28, C:0.00, G:0.22, T:0.50
Consensus pattern (20 bp):
TTTTGGATGAAATGGATTAA
Found at i:999137 original size:43 final size:43
Alignment explanation
Indices: 999089--999281 Score: 210
Period size: 43 Copynumber: 4.5 Consensus size: 43
999079 GATATCGAAA
* *
999089 TGTGATTACATGAAAGACCATGTCTGGGACATTGGCATTGTAT
1 TGTGATTACGTGTAAGACCATGTCTGGGACATTGGCATTGTAT
* *
999132 TGTGATTACGTGTAAGACCATATCTGGGATATTGGCATTGTAT
1 TGTGATTACGTGTAAGACCATGTCTGGGACATTGGCATTGTAT
*
999175 TGTGATTACGTGTAAGACCATGTCTGGGACATTGGTATTGT-T
1 TGTGATTACGTGTAAGACCATGTCTGGGACATTGGCATTGTAT
* ** * * * * *
999217 ATATGATTTTGTGTAAAATCTTGTCTGGGACAGTGGCATCG-AT
1 -TGTGATTACGTGTAAGACCATGTCTGGGACATTGGCATTGTAT
* * *
999260 ATATGATAACATGTAAGACCAT
1 -TGTGATTACGTGTAAGACCAT
999282 ATATGGTATA
Statistics
Matches: 125, Mismatches: 23, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
42 1 0.01
43 124 0.99
ACGTcount: A:0.27, C:0.12, G:0.25, T:0.35
Consensus pattern (43 bp):
TGTGATTACGTGTAAGACCATGTCTGGGACATTGGCATTGTAT
Found at i:1012090 original size:43 final size:43
Alignment explanation
Indices: 1012023--1012188 Score: 194
Period size: 43 Copynumber: 3.9 Consensus size: 43
1012013 AAAACTCGTA
* * * *
1012023 CAATGCC-ATATCCCAGATATGGTCTTACATGTTATCACATAT
1 CAATGCCAATGTCCCAGACATGGTCTTACACGTAATCACATAT
* * * * * *
1012065 CGATGCCACTGTCCCAGATAGGGTCTTACACGAAATCGA-ATAA
1 CAATGCCAATGTCCCAGACATGGTCTTACACGTAATC-ACATAT
1012108 CAATGCCAATGTCCCAGACATGGTCTTACACGTAATCACA-AT
1 CAATGCCAATGTCCCAGACATGGTCTTACACGTAATCACATAT
*
1012150 ACAATGCCAATGTCCCAGACATGGTCTTACATGTAATCA
1 -CAATGCCAATGTCCCAGACATGGTCTTACACGTAATCA
1012189 TATCTCGGTA
Statistics
Matches: 105, Mismatches: 15, Indels: 7
0.83 0.12 0.06
Matches are distributed among these distances:
42 8 0.08
43 96 0.91
44 1 0.01
ACGTcount: A:0.33, C:0.26, G:0.16, T:0.26
Consensus pattern (43 bp):
CAATGCCAATGTCCCAGACATGGTCTTACACGTAATCACATAT
Found at i:1012178 original size:86 final size:85
Alignment explanation
Indices: 1012022--1012180 Score: 221
Period size: 86 Copynumber: 1.9 Consensus size: 85
1012012 TAAAACTCGT
* * * * * *
1012022 ACAATGCCATATCCCAGATATGGTCTTACATGTTATCACATATCGATGCCACTGTCCCAGATAGG
1 ACAATGCCATATCCCAGACATGGTCTTACACGTAATCACATATCAATGCCAATGTCCCAGACAGG
1012087 GTCTTACACGAAATCGAATA
66 GTCTTACACGAAATCGAATA
*
1012107 ACAATGCCAATGTCCCAGACATGGTCTTACACGTAATCACA-ATACAATGCCAATGTCCCAGACA
1 ACAATGCC-ATATCCCAGACATGGTCTTACACGTAATCACATAT-CAATGCCAATGTCCCAGACA
*
1012171 TGGTCTTACA
64 GGGTCTTACA
1012181 TGTAATCATA
Statistics
Matches: 64, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
85 10 0.16
86 54 0.84
ACGTcount: A:0.33, C:0.26, G:0.16, T:0.25
Consensus pattern (85 bp):
ACAATGCCATATCCCAGACATGGTCTTACACGTAATCACATATCAATGCCAATGTCCCAGACAGG
GTCTTACACGAAATCGAATA
Found at i:1017079 original size:39 final size:39
Alignment explanation
Indices: 1017015--1017154 Score: 208
Period size: 39 Copynumber: 3.6 Consensus size: 39
1017005 ATCGTAATCT
* * *
1017015 GAAGCCCAAAGTCTAGCTGAAGCACATAAGTGCTAAACG
1 GAAGCCCAAAGGCTAACTGAAGCACACAAGTGCTAAACG
* * *
1017054 GAAGCCCGAAGGCTAACTGAGGCACACAAGTGTTAAACG
1 GAAGCCCAAAGGCTAACTGAAGCACACAAGTGCTAAACG
* *
1017093 GAAGCCCGAAGGCTTACTGAAGCACACAAGTGCTAAACG
1 GAAGCCCAAAGGCTAACTGAAGCACACAAGTGCTAAACG
1017132 GAAGCCCAAAGGCTAACTGAAGC
1 GAAGCCCAAAGGCTAACTGAAGC
1017155 TCATCAGAGC
Statistics
Matches: 90, Mismatches: 11, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
39 90 1.00
ACGTcount: A:0.37, C:0.24, G:0.26, T:0.13
Consensus pattern (39 bp):
GAAGCCCAAAGGCTAACTGAAGCACACAAGTGCTAAACG
Done.