Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: scaffold477.1
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 1033125
ACGTcount: A:0.33, C:0.15, G:0.16, T:0.33
Warning! 34335 characters in sequence are not A, C, G, or T
File 2 of 3
Found at i:352164 original size:116 final size:116
Alignment explanation
Indices: 351960--352185 Score: 346
Period size: 116 Copynumber: 1.9 Consensus size: 116
351950 GGTACATGAA
* * * **
351960 CTTAGGTTCAAGGTTCAAATCGGCACCTAAGATTTTTTCTCAATTAGGTACTTGAACTTGGTTTT
1 CTTAGCTTCAAGGTTCAAATCAGCACCTAAGATTTTTTCTCAATTAGGCACTTGAACTTGACTTT
*
352025 AAGGGTCAATTTGGTAACAAAAGTTTATTTTGGTTCAATTAGGTAATTAAG
66 AAGGGTCAATTTGGTAACAAAAGTTTATTTTGGTCCAATTAGGTAATTAAG
*
352076 CTTAGCTTCAAGGTTCAAATCAGTACCTAAGAGTTTTTTC-CAATTAGGCACTTGAACTTGACTT
1 CTTAGCTTCAAGGTTCAAATCAGCACCTAAGA-TTTTTTCTCAATTAGGCACTTGAACTTGACTT
* * *
352140 TAAGGTTCAATTTGGTACCCAAAGTTTATTTTGGTCCAATTAGGTA
65 TAAGGGTCAATTTGGTAACAAAAGTTTATTTTGGTCCAATTAGGTA
352186 CCTAAAACTT
Statistics
Matches: 99, Mismatches: 10, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
116 92 0.93
117 7 0.07
ACGTcount: A:0.29, C:0.15, G:0.19, T:0.38
Consensus pattern (116 bp):
CTTAGCTTCAAGGTTCAAATCAGCACCTAAGATTTTTTCTCAATTAGGCACTTGAACTTGACTTT
AAGGGTCAATTTGGTAACAAAAGTTTATTTTGGTCCAATTAGGTAATTAAG
Found at i:361046 original size:3 final size:3
Alignment explanation
Indices: 361038--361073 Score: 63
Period size: 3 Copynumber: 12.0 Consensus size: 3
361028 TTCATGGCCT
*
361038 ATG ATG ATG ATG ATG ATG ATG ATG ATG TTG ATG ATG
1 ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG
361074 TTAGTAACTA
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 31 1.00
ACGTcount: A:0.31, C:0.00, G:0.33, T:0.36
Consensus pattern (3 bp):
ATG
Found at i:370715 original size:19 final size:17
Alignment explanation
Indices: 370681--370730 Score: 50
Period size: 19 Copynumber: 2.9 Consensus size: 17
370671 TATTTATTAT
370681 ATATTATAAATATAAAA
1 ATATTATAAATATAAAA
*
370698 ATATTTTAAATAATTAAAA
1 ATATTATAAAT-A-TAAAA
370717 ATGA-TATAAA-ATAA
1 AT-ATTATAAATATAA
370731 GTCAGGTTTT
Statistics
Matches: 28, Mismatches: 2, Indels: 7
0.76 0.05 0.19
Matches are distributed among these distances:
16 3 0.11
17 11 0.39
18 1 0.04
19 12 0.43
20 1 0.04
ACGTcount: A:0.62, C:0.00, G:0.02, T:0.36
Consensus pattern (17 bp):
ATATTATAAATATAAAA
Found at i:371548 original size:21 final size:23
Alignment explanation
Indices: 371514--371558 Score: 58
Period size: 21 Copynumber: 2.0 Consensus size: 23
371504 ATTTTTATAA
371514 TTTTTAAAAATAAA-T-TAATTT
1 TTTTTAAAAATAAACTATAATTT
**
371535 TTTTTAAAGTTAAACTATAATTT
1 TTTTTAAAAATAAACTATAATTT
371558 T
1 T
371559 ACCATACATT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
21 12 0.60
22 1 0.05
23 7 0.35
ACGTcount: A:0.42, C:0.02, G:0.02, T:0.53
Consensus pattern (23 bp):
TTTTTAAAAATAAACTATAATTT
Found at i:373051 original size:95 final size:95
Alignment explanation
Indices: 372925--373138 Score: 297
Period size: 95 Copynumber: 2.3 Consensus size: 95
372915 ATAAATCTCA
* *
372925 AAAT-TATACATAAACTTTAATTTTATGTGTAATTTTATATATGAATTTTAATTTAGTGCAATAA
1 AAATATATACATAAACTTTAATTTAATATGTAATTTTATATATGAATTTTAATTTAGTGCAATAA
*
372989 TATATACACATAAAACTTTTATTGTTGA-C
66 TATATACACATAAAACTTTTATTGTAGATC
* * * * *
373018 TAAATATATAAATAAACTTTGATTTAATATGTAATTTTATATATGAATTTTGATTTAGTGTAATT
1 -AAATATATACATAAACTTTAATTTAATATGTAATTTTATATATGAATTTTAATTTAGTGCAATA
* *
373083 ATATATACACGTAAAATTTTTATTGTAGATC
65 ATATATACACATAAAACTTTTATTGTAGATC
*
373114 AAATATATACATAAAACTTCAATTT
1 AAATATATACAT-AAACTTTAATTT
373139 TCATTTAACC
Statistics
Matches: 104, Mismatches: 13, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
94 4 0.04
95 89 0.86
96 11 0.11
ACGTcount: A:0.41, C:0.07, G:0.07, T:0.45
Consensus pattern (95 bp):
AAATATATACATAAACTTTAATTTAATATGTAATTTTATATATGAATTTTAATTTAGTGCAATAA
TATATACACATAAAACTTTTATTGTAGATC
Found at i:377876 original size:14 final size:14
Alignment explanation
Indices: 377857--377886 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
377847 TGTATTGTTC
*
377857 AAAAATATATAAAT
1 AAAAATATAAAAAT
377871 AAAAATATAAAAAT
1 AAAAATATAAAAAT
377885 AA
1 AA
377887 TTATAAAATT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (14 bp):
AAAAATATAAAAAT
Found at i:380773 original size:22 final size:23
Alignment explanation
Indices: 380725--380781 Score: 71
Period size: 22 Copynumber: 2.5 Consensus size: 23
380715 AACCCCCTCT
**
380725 AATACAATCTCTTCTCTCCCCAA
1 AATACAATCGATTCTCTCCCCAA
*
380748 AATACAATCGATTCT-TCCTCAA
1 AATACAATCGATTCTCTCCCCAA
*
380770 AATACCATCGAT
1 AATACAATCGAT
380782 CCCCCCCTTT
Statistics
Matches: 30, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
22 17 0.57
23 13 0.43
ACGTcount: A:0.35, C:0.32, G:0.04, T:0.30
Consensus pattern (23 bp):
AATACAATCGATTCTCTCCCCAA
Found at i:392156 original size:126 final size:129
Alignment explanation
Indices: 392012--392261 Score: 362
Period size: 133 Copynumber: 1.9 Consensus size: 129
392002 AAAGATTTTA
*
392012 ATAATAGTTAAACTGAGAATTAAACCCTAAACCC-TA-AAACTAAGTAGTAAGCATCAAACAAGA
1 ATAATAGTTAAACTGAGAATTAAAACCTAAACCCATATAAACTAAGTAGTAAGCATCAAACAAGA
* *
392075 GT-AAAATAACGCAATAAAAACAATCATAATAATATTATAGTTAAAAATTAACCAGTGAATTGG
66 GTAAAAATAACGAAATAAAAACAATCATAATAATAATATAGTTAAAAATTAACCAGTGAATTGG
* * * *
392138 ATAATAGTTAAGCTGAGAATTAAAACCTAAACCCTAATACTTAAATTAAGTAGTAGGCGTCAAAC
1 ATAATAGTTAAACTGAGAATTAAAACCTAAACCC--ATA--TAAACTAAGTAGTAAGCATCAAAC
* *
392203 AAGAGTAAAAATAACGAAATAACAACAATCATAATCATAATATAGTTAAAAATTAACCA
62 AAGAGTAAAAATAACGAAATAAAAACAATCATAATAATAATATAGTTAAAAATTAACCA
392262 ATCAGTTCAA
Statistics
Matches: 108, Mismatches: 9, Indels: 7
0.87 0.07 0.06
Matches are distributed among these distances:
126 32 0.30
129 2 0.02
132 26 0.24
133 48 0.44
ACGTcount: A:0.52, C:0.14, G:0.11, T:0.24
Consensus pattern (129 bp):
ATAATAGTTAAACTGAGAATTAAAACCTAAACCCATATAAACTAAGTAGTAAGCATCAAACAAGA
GTAAAAATAACGAAATAAAAACAATCATAATAATAATATAGTTAAAAATTAACCAGTGAATTGG
Found at i:392280 original size:133 final size:132
Alignment explanation
Indices: 391961--392312 Score: 380
Period size: 126 Copynumber: 2.7 Consensus size: 132
391951 AAAACAAAAC
* * * * * * * *
391961 AATAACAACAGTCACAATCATAATAAAGCTAAACATTAACCAAAGATTTTAATAATAGTTAAACT
1 AATAACAACAATCATAATCATAATATAGTTAAAAATTAACCAATGAATTCAATAATAGTTAAACT
*
392026 GAGAATTAAACCCTAAACCC---TA---AAACTAAGTAGTAAGCATCAAACAAGAGTAAAATAAC
66 GAGAATTAAAACCTAAACCCTAATACTTAAACTAAGTAGTAAGCATCAAACAAGAGTAAAATAAC
*
392085 GC
131 GA
* * * * ** *
392087 AATAAAAACAATCATAATAATATTATAGTTAAAAATTAACCAGTGAATTGGATAATAGTTAAGCT
1 AATAACAACAATCATAATCATAATATAGTTAAAAATTAACCAATGAATTCAATAATAGTTAAACT
* * *
392152 GAGAATTAAAACCTAAACCCTAATACTTAAATTAAGTAGTAGGCGTCAAACAAGAGTAAAAATAA
66 GAGAATTAAAACCTAAACCCTAATACTTAAACTAAGTAGTAAGCATCAAACAAGAGT-AAAATAA
392217 CGA
130 CGA
* * *
392220 AATAACAACAATCATAATCATAATATAGTTAAAAATTAACCAATCAGTTCAATCGA-AGTTAAAA
1 AATAACAACAATCATAATCATAATATAGTTAAAAATTAACCAATGAATTCAAT-AATAGTT-AAA
* * *
392284 CTAAGAATT-AAA-CGAAACCCTAACACTTA
64 CTGAGAATTAAAACCTAAACCCTAATACTTA
392313 TGAAAAAAAT
Statistics
Matches: 185, Mismatches: 32, Indels: 12
0.81 0.14 0.05
Matches are distributed among these distances:
126 70 0.38
129 2 0.01
132 41 0.22
133 61 0.33
134 11 0.06
ACGTcount: A:0.51, C:0.15, G:0.10, T:0.24
Consensus pattern (132 bp):
AATAACAACAATCATAATCATAATATAGTTAAAAATTAACCAATGAATTCAATAATAGTTAAACT
GAGAATTAAAACCTAAACCCTAATACTTAAACTAAGTAGTAAGCATCAAACAAGAGTAAAATAAC
GA
Found at i:393152 original size:6 final size:6
Alignment explanation
Indices: 393141--393173 Score: 66
Period size: 6 Copynumber: 5.5 Consensus size: 6
393131 AAATAAAATC
393141 ATTGAA ATTGAA ATTGAA ATTGAA ATTGAA ATT
1 ATTGAA ATTGAA ATTGAA ATTGAA ATTGAA ATT
393174 TTGACATGTG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.15, T:0.36
Consensus pattern (6 bp):
ATTGAA
Found at i:406362 original size:51 final size:51
Alignment explanation
Indices: 406286--406387 Score: 204
Period size: 51 Copynumber: 2.0 Consensus size: 51
406276 GTAAAAAAGA
406286 AGGTAGAATATTGAGTTGCTGCTGCATGAGATATGTAGTGATAATTTGATC
1 AGGTAGAATATTGAGTTGCTGCTGCATGAGATATGTAGTGATAATTTGATC
406337 AGGTAGAATATTGAGTTGCTGCTGCATGAGATATGTAGTGATAATTTGATC
1 AGGTAGAATATTGAGTTGCTGCTGCATGAGATATGTAGTGATAATTTGATC
406388 TTCATATTCA
Statistics
Matches: 51, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
51 51 1.00
ACGTcount: A:0.29, C:0.08, G:0.27, T:0.35
Consensus pattern (51 bp):
AGGTAGAATATTGAGTTGCTGCTGCATGAGATATGTAGTGATAATTTGATC
Found at i:408171 original size:24 final size:25
Alignment explanation
Indices: 408144--408216 Score: 69
Period size: 23 Copynumber: 2.8 Consensus size: 25
408134 CTCAAAATTG
*
408144 AATTAAATTTTATTTTTAATA-AAT
1 AATTAAATTTTATTTTTAATATAAA
408168 AATT-AATTTTAATTTTTTATTATATAAA
1 AATTAAATTTT-A-TTTTTA--ATATAAA
408196 AATTAAATATTTTATTTTTAA
1 AATT-AA-ATTTTATTTTTAA
408217 AATAGTGAAA
Statistics
Matches: 40, Mismatches: 1, Indels: 13
0.74 0.02 0.24
Matches are distributed among these distances:
23 6 0.15
24 5 0.12
25 6 0.15
27 4 0.10
28 6 0.15
29 6 0.15
30 2 0.05
31 5 0.12
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (25 bp):
AATTAAATTTTATTTTTAATATAAA
Found at i:408171 original size:29 final size:27
Alignment explanation
Indices: 408137--408216 Score: 76
Period size: 29 Copynumber: 2.9 Consensus size: 27
408127 CTGGTTACTC
408137 AAAATTGAATTAAATTTTATTTTTAATA
1 AAAATT-AATTAAATTTTATTTTTAATA
* *
408165 AATAATTAATTTTAATTTT-TTATTATATA
1 AA-AATTAA-TTAAATTTTATTTTTA-ATA
*
408194 AAAATTAA--ATATTTTATTTTTAA
1 AAAATTAATTAAATTTTATTTTTAA
408217 AATAGTGAAA
Statistics
Matches: 43, Mismatches: 5, Indels: 11
0.73 0.08 0.19
Matches are distributed among these distances:
25 6 0.14
26 5 0.12
28 15 0.35
29 17 0.40
ACGTcount: A:0.45, C:0.00, G:0.01, T:0.54
Consensus pattern (27 bp):
AAAATTAATTAAATTTTATTTTTAATA
Found at i:410234 original size:17 final size:17
Alignment explanation
Indices: 410208--410247 Score: 53
Period size: 17 Copynumber: 2.4 Consensus size: 17
410198 CTTACTCCTT
* *
410208 TAAAAATAATAAAATTA
1 TAAAATTAATAAAATGA
*
410225 TAAAATTAATATAATGA
1 TAAAATTAATAAAATGA
410242 TAAAAT
1 TAAAAT
410248 AGTCTTTTTC
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.65, C:0.00, G:0.03, T:0.33
Consensus pattern (17 bp):
TAAAATTAATAAAATGA
Found at i:410778 original size:14 final size:14
Alignment explanation
Indices: 410761--410787 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
410751 ATGTTAAAAT
410761 TTGTAATTTAATTC
1 TTGTAATTTAATTC
410775 TTGTAATTTAATT
1 TTGTAATTTAATT
410788 TGACATAATT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.30, C:0.04, G:0.07, T:0.59
Consensus pattern (14 bp):
TTGTAATTTAATTC
Found at i:413529 original size:18 final size:18
Alignment explanation
Indices: 413506--413542 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
413496 GTGTGAGTAT
413506 TATGTAGTAATACTAAGC
1 TATGTAGTAATACTAAGC
413524 TATGTAGTAATACTAAGC
1 TATGTAGTAATACTAAGC
413542 T
1 T
413543 GAGATGATAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.38, C:0.11, G:0.16, T:0.35
Consensus pattern (18 bp):
TATGTAGTAATACTAAGC
Found at i:414740 original size:24 final size:25
Alignment explanation
Indices: 414698--414748 Score: 68
Period size: 24 Copynumber: 2.1 Consensus size: 25
414688 ACGATAGATC
* * *
414698 AAAATAAAATTTTAGATATTAAATT
1 AAAATAAAATTATAAATATCAAATT
414723 AAAA-AAAATTATAAATATCAAATT
1 AAAATAAAATTATAAATATCAAATT
414747 AA
1 AA
414749 GAGAATGTGC
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
24 19 0.83
25 4 0.17
ACGTcount: A:0.63, C:0.02, G:0.02, T:0.33
Consensus pattern (25 bp):
AAAATAAAATTATAAATATCAAATT
Found at i:415145 original size:21 final size:22
Alignment explanation
Indices: 415102--415146 Score: 67
Period size: 22 Copynumber: 2.1 Consensus size: 22
415092 AAAATAAGAT
415102 AATACAAAGATTAATACTTACA
1 AATACAAAGATTAATACTTACA
415124 AATACAAA-ATCTAATA-TTACA
1 AATACAAAGAT-TAATACTTACA
415145 AA
1 AA
415147 CAGTGAAGAA
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
21 9 0.41
22 13 0.59
ACGTcount: A:0.58, C:0.13, G:0.02, T:0.27
Consensus pattern (22 bp):
AATACAAAGATTAATACTTACA
Found at i:424006 original size:85 final size:85
Alignment explanation
Indices: 423812--424239 Score: 429
Period size: 85 Copynumber: 5.0 Consensus size: 85
423802 CACAAAAACG
*
423812 ATATATATGCAATTTCCAAAAGAACATTTTAGGTTTCAATAAATCATA-TTC---CACTCCTATA
1 ATATATATG-AATTTCCAAAAGAACATTTTAGGTTTCAATAAATCGTATTTCGTTC-CTCCTATA
*
423873 CAAACCGGAGTAGACTATCCCCT
64 CAAACCGGAGAAGACTAT-CCCT
* * * *
423896 AGATATA-GAATTTCCAAAAGAACATTTTATGTTTCAATAGATTGTATTTCGTTCCTCCTATACA
1 ATATATATGAATTTCCAAAAGAACATTTTAGGTTTCAATAAATCGTATTTCGTTCCTCCTATACA
*
423960 AACCAGAGAAGACTATCCCT
66 AACCGGAGAAGACTATCCCT
* * *
423980 ATATATATG-ATTTCCAAAAAGAACATTTTAGGTTCCAATAAATCATATTTCGTTCCTCCCATAC
1 ATATATATGAATTTCC-AAAAGAACATTTTAGGTTTCAATAAATCGTATTTCGTTCCTCCTATAC
* *
424044 AAACTGGAGTAGACTATCCCT
65 AAACCGGAGAAGACTATCCCT
* * * * * * * * **
424065 ATATATGT-AATTCCCAAAAGAACAGTTTAGGTTCCAATAAATCGTACTCCTTTCCTCCTAAATG
1 ATATATATGAATTTCCAAAAGAACATTTTAGGTTTCAATAAATCGTATTTCGTTCCTCCTATACA
*
424129 AACCGGAGAAGACCATCCCTAT
66 AACCGGAGAAGACTATCCC--T
* * *
424151 ATATATATGTATATAATTTCAAAAAAGAACATTTTAAGTTTCAATAAATCGTATTTTGTTCCTCC
1 ATATATATG-----AATTTC-CAAAAGAACATTTTAGGTTTCAATAAATCGTATTTCGTTCCTCC
* ***
424216 TATACGAACAACAGAAGACTATCC
60 TATACAAACCGGAGAAGACTATCC
424240 TAATCGAATA
Statistics
Matches: 281, Mismatches: 47, Indels: 23
0.80 0.13 0.07
Matches are distributed among these distances:
82 34 0.12
83 4 0.01
84 78 0.28
85 97 0.35
86 9 0.03
92 5 0.02
93 54 0.19
ACGTcount: A:0.37, C:0.21, G:0.11, T:0.32
Consensus pattern (85 bp):
ATATATATGAATTTCCAAAAGAACATTTTAGGTTTCAATAAATCGTATTTCGTTCCTCCTATACA
AACCGGAGAAGACTATCCCT
Found at i:424149 original size:169 final size:172
Alignment explanation
Indices: 423812--424220 Score: 476
Period size: 169 Copynumber: 2.4 Consensus size: 172
423802 CACAAAAACG
423812 ATATATATGCAATTTCC-AAAAGAACATTTTAGGTTTCAATAAATCATA-TTC---CACTCCTAT
1 ATATATATG-AATTTCCAAAAAGAACATTTTAGGTTTCAATAAATCATATTTCGTTC-CTCCTAT
* * * * *
423872 ACAAACCGGAGTAGACTATCCCCTAGATATAGAATTTCCAAAAGAACATTTTATGTTTCAATAGA
64 ACAAACCGGAGTAGACTATCCCCTAGATATAGAATTCCCAAAAGAACAGTTTAGGTTCCAATAAA
* * * * *
423937 TTGTATTTCGTTCCTCCTATACAAACCAGAGAAGACTATCCC-T
129 TCGTACTCCGTTCCTCCTAAACAAACCAGAGAAGACCATCCCAT
* *
423980 ATATATATG-ATTTCCAAAAAGAACATTTTAGGTTCCAATAAATCATATTTCGTTCCTCCCATAC
1 ATATATATGAATTTCCAAAAAGAACATTTTAGGTTTCAATAAATCATATTTCGTTCCTCCTATAC
* *
424044 AAACTGGAGTAGACTAT-CCCTATATAT-GTAATTCCCAAAAGAACAGTTTAGGTTCCAATAAAT
66 AAACCGGAGTAGACTATCCCCTAGATATAG-AATTCCCAAAAGAACAGTTTAGGTTCCAATAAAT
* ** *
424107 CGTACTCCTTTCCTCCTAAATGAACCGGAGAAGACCATCCCTAT
130 CGTACTCCGTTCCTCCTAAACAAACCAGAGAAGACCATCCC-AT
* * * *
424151 ATATATATGTATATAATTTCAAAAAAGAACATTTTAAGTTTCAATAAATCGTATTTTGTTCCTCC
1 ATATATATG-----AATTTCCAAAAAGAACATTTTAGGTTTCAATAAATCATATTTCGTTCCTCC
424216 TATAC
61 TATAC
424221 GAACAACAGA
Statistics
Matches: 203, Mismatches: 24, Indels: 19
0.83 0.10 0.08
Matches are distributed among these distances:
166 6 0.03
167 30 0.15
168 13 0.06
169 70 0.34
170 24 0.12
171 11 0.05
177 49 0.24
ACGTcount: A:0.36, C:0.20, G:0.11, T:0.33
Consensus pattern (172 bp):
ATATATATGAATTTCCAAAAAGAACATTTTAGGTTTCAATAAATCATATTTCGTTCCTCCTATAC
AAACCGGAGTAGACTATCCCCTAGATATAGAATTCCCAAAAGAACAGTTTAGGTTCCAATAAATC
GTACTCCGTTCCTCCTAAACAAACCAGAGAAGACCATCCCAT
Found at i:425327 original size:15 final size:17
Alignment explanation
Indices: 425307--425339 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
425297 TGATATTATA
425307 ATAATTT-T-TTATTTG
1 ATAATTTATGTTATTTG
425322 ATAATTTATGTTATTTG
1 ATAATTTATGTTATTTG
425339 A
1 A
425340 ACGAATAAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 7 0.44
16 1 0.06
17 8 0.50
ACGTcount: A:0.30, C:0.00, G:0.09, T:0.61
Consensus pattern (17 bp):
ATAATTTATGTTATTTG
Found at i:426666 original size:44 final size:45
Alignment explanation
Indices: 426602--426722 Score: 172
Period size: 44 Copynumber: 2.7 Consensus size: 45
426592 ACCAAAAACA
* *
426602 AGTAAGACCATAGTTGAAAGACGTTATGGCATCCCAATTTTAACG
1 AGTAAGACCATAGTTGAAAGACGTTATGGCATCACAATTCTAACG
* * *
426647 AGTAA-ATCATAGTTGAAAGACGTTATGGCATCACGATTCTAGCG
1 AGTAAGACCATAGTTGAAAGACGTTATGGCATCACAATTCTAACG
* *
426691 AGTAAGACCATAGCTGAAAGACGCTATGGCAT
1 AGTAAGACCATAGTTGAAAGACGTTATGGCAT
426723 TATGAATCAG
Statistics
Matches: 67, Mismatches: 8, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
44 39 0.58
45 28 0.42
ACGTcount: A:0.36, C:0.17, G:0.22, T:0.25
Consensus pattern (45 bp):
AGTAAGACCATAGTTGAAAGACGTTATGGCATCACAATTCTAACG
Found at i:426742 original size:45 final size:45
Alignment explanation
Indices: 426602--426772 Score: 161
Period size: 45 Copynumber: 3.8 Consensus size: 45
426592 ACCAAAAACA
* * * *
426602 AGTAAGACCATAGTTGAAAGACGTTATGGCATC-CCAATTTTAACG
1 AGTAAGACCATAGTTGAAAGACGCTATGGCATCACGAA-TCTAGCG
* * *
426647 AGTAA-ATCATAGTTGAAAGACGTTATGGCATCACGATTCTAGCG
1 AGTAAGACCATAGTTGAAAGACGCTATGGCATCACGAATCTAGCG
* * *
426691 AGTAAGACCATAGCTGAAAGACGCTATGGCATTATGAATC-AGACG
1 AGTAAGACCATAGTTGAAAGACGCTATGGCATCACGAATCTAG-CG
** * *
426736 -GATAAGACCACGGTTGAAAGACACTATGGCAACACGA
1 AG-TAAGACCATAGTTGAAAGACGCTATGGCATCACGA
426773 TATAAAATGA
Statistics
Matches: 104, Mismatches: 18, Indels: 8
0.80 0.14 0.06
Matches are distributed among these distances:
44 39 0.38
45 65 0.62
ACGTcount: A:0.37, C:0.18, G:0.23, T:0.22
Consensus pattern (45 bp):
AGTAAGACCATAGTTGAAAGACGCTATGGCATCACGAATCTAGCG
Found at i:426802 original size:46 final size:45
Alignment explanation
Indices: 426737--426850 Score: 131
Period size: 46 Copynumber: 2.5 Consensus size: 45
426727 AATCAGACGG
* * *
426737 ATAAGACCACGGTTGAAAGACACTATGGCAACACGATAT-AAAATGA
1 ATAAGACCATGGTTGAAAGACACTATGACAACAAG-T-TGAAAATGA
* * * **
426783 ATAAGATCATGGTTGAAAGACACTCTGACATCAAGTTGGGAATGA
1 ATAAGACCATGGTTGAAAGACACTATGACAACAAGTTGAAAATGA
426828 ATAAGACCATGGTTGAAAGACAC
1 ATAAGACCATGGTTGAAAGACAC
426851 CATAACATTC
Statistics
Matches: 58, Mismatches: 9, Indels: 3
0.83 0.13 0.04
Matches are distributed among these distances:
44 1 0.02
45 28 0.48
46 29 0.50
ACGTcount: A:0.42, C:0.16, G:0.22, T:0.20
Consensus pattern (45 bp):
ATAAGACCATGGTTGAAAGACACTATGACAACAAGTTGAAAATGA
Found at i:436683 original size:12 final size:12
Alignment explanation
Indices: 436666--436690 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
436656 TTACAATTGA
436666 AAAATATTTTTT
1 AAAATATTTTTT
436678 AAAATATTTTTT
1 AAAATATTTTTT
436690 A
1 A
436691 TACAGTAAAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (12 bp):
AAAATATTTTTT
Found at i:440183 original size:16 final size:15
Alignment explanation
Indices: 440150--440188 Score: 53
Period size: 15 Copynumber: 2.5 Consensus size: 15
440140 TAGTCTTCCA
440150 TTTTAAAAAATAATT
1 TTTTAAAAAATAATT
440165 TTTTAAAAAAGTTAA-T
1 TTTTAAAAAA--TAATT
440181 TTTTAAAA
1 TTTTAAAA
440189 GATTAATGAT
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
15 10 0.45
16 9 0.41
17 3 0.14
ACGTcount: A:0.51, C:0.00, G:0.03, T:0.46
Consensus pattern (15 bp):
TTTTAAAAAATAATT
Found at i:440229 original size:15 final size:16
Alignment explanation
Indices: 440209--440238 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
440199 TAAATTTAAC
440209 TTAAAAA-TAAAAAAT
1 TTAAAAATTAAAAAAT
440224 TTAAAAATTAAAAAA
1 TTAAAAATTAAAAAA
440239 AATTAAAATA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 7 0.50
16 7 0.50
ACGTcount: A:0.73, C:0.00, G:0.00, T:0.27
Consensus pattern (16 bp):
TTAAAAATTAAAAAAT
Found at i:451778 original size:20 final size:20
Alignment explanation
Indices: 451753--451812 Score: 67
Period size: 20 Copynumber: 3.2 Consensus size: 20
451743 AAACTTCAAA
451753 AGTAAAATATTATTCTAGAT
1 AGTAAAATATTATTCTAGAT
* *
451773 AGTAAAA-A--CTTC-A-AA
1 AGTAAAATATTATTCTAGAT
451788 AGTAAAATATTATTCTAGAT
1 AGTAAAATATTATTCTAGAT
451808 AGTAA
1 AGTAA
451813 TTGGAATGAA
Statistics
Matches: 31, Mismatches: 4, Indels: 10
0.69 0.09 0.22
Matches are distributed among these distances:
15 8 0.26
16 2 0.06
17 3 0.10
18 3 0.10
19 2 0.06
20 13 0.42
ACGTcount: A:0.50, C:0.07, G:0.10, T:0.33
Consensus pattern (20 bp):
AGTAAAATATTATTCTAGAT
Found at i:451780 original size:35 final size:35
Alignment explanation
Indices: 451741--451812 Score: 144
Period size: 35 Copynumber: 2.1 Consensus size: 35
451731 TCAAGATAAG
451741 AAAAACTTCAAAAGTAAAATATTATTCTAGATAGT
1 AAAAACTTCAAAAGTAAAATATTATTCTAGATAGT
451776 AAAAACTTCAAAAGTAAAATATTATTCTAGATAGT
1 AAAAACTTCAAAAGTAAAATATTATTCTAGATAGT
451811 AA
1 AA
451813 TTGGAATGAA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 37 1.00
ACGTcount: A:0.53, C:0.08, G:0.08, T:0.31
Consensus pattern (35 bp):
AAAAACTTCAAAAGTAAAATATTATTCTAGATAGT
Found at i:469343 original size:20 final size:20
Alignment explanation
Indices: 469299--469345 Score: 67
Period size: 20 Copynumber: 2.4 Consensus size: 20
469289 TCAACATTTG
* *
469299 AGCTCAAGTTAGCTCATTCG
1 AGCTCAAGTCAGCTCATTCA
*
469319 TGCTCAAGTCAGCTCATTCA
1 AGCTCAAGTCAGCTCATTCA
469339 AGCTCAA
1 AGCTCAA
469346 TTTAACTCGT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.28
Consensus pattern (20 bp):
AGCTCAAGTCAGCTCATTCA
Found at i:469720 original size:45 final size:45
Alignment explanation
Indices: 469670--469863 Score: 289
Period size: 45 Copynumber: 4.3 Consensus size: 45
469660 GAACGGCATG
*
469670 AAATTAAGGAAGCATTTGACCAACATCATGCATAATTTATGGAAC
1 AAATTAAGGAAGCATTTGACCAACATCATGCATAATTCATGGAAC
* *
469715 AAATTAAGGAAGCACTTGACCAACATCATGCATAATTCATGGAAG
1 AAATTAAGGAAGCATTTGACCAACATCATGCATAATTCATGGAAC
* * *
469760 AATTTGAGGAAGCATTTGACCAACATCATGCATAATTCATGGAAG
1 AAATTAAGGAAGCATTTGACCAACATCATGCATAATTCATGGAAC
* * * *
469805 AATTTAAGGAAGCATTTGGCCAACATCATGCATAATTTAAGGAAC
1 AAATTAAGGAAGCATTTGACCAACATCATGCATAATTCATGGAAC
*
469850 AAATTGAGGAAGCA
1 AAATTAAGGAAGCA
469864 CCATGGCCGA
Statistics
Matches: 136, Mismatches: 13, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
45 136 1.00
ACGTcount: A:0.41, C:0.15, G:0.19, T:0.25
Consensus pattern (45 bp):
AAATTAAGGAAGCATTTGACCAACATCATGCATAATTCATGGAAC
Found at i:474276 original size:13 final size:15
Alignment explanation
Indices: 474244--474273 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
474234 TAATCCCTCC
474244 AATTTAATCTATCAA
1 AATTTAATCTATCAA
474259 AATTTAATCT-TCAA
1 AATTTAATCTATCAA
474273 A
1 A
474274 TTTTGTGAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 5 0.33
15 10 0.67
ACGTcount: A:0.47, C:0.13, G:0.00, T:0.40
Consensus pattern (15 bp):
AATTTAATCTATCAA
Found at i:475677 original size:3 final size:3
Alignment explanation
Indices: 475671--475698 Score: 56
Period size: 3 Copynumber: 9.3 Consensus size: 3
475661 CTGTAACAAC
475671 ATA ATA ATA ATA ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA A
475699 AGTATGTTAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
ATA
Found at i:477297 original size:14 final size:14
Alignment explanation
Indices: 477278--477311 Score: 59
Period size: 14 Copynumber: 2.4 Consensus size: 14
477268 CACTCAACCT
477278 GAACCAATTAGGAC
1 GAACCAATTAGGAC
477292 GAACCAATTAGGAC
1 GAACCAATTAGGAC
*
477306 AAACCA
1 GAACCA
477312 CTAGGCTATC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.47, C:0.24, G:0.18, T:0.12
Consensus pattern (14 bp):
GAACCAATTAGGAC
Found at i:478409 original size:14 final size:14
Alignment explanation
Indices: 478390--478416 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
478380 GATAAAATTA
478390 TAAATTCATTTAAT
1 TAAATTCATTTAAT
478404 TAAATTCATTTAA
1 TAAATTCATTTAA
478417 ACCAACAAAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.44, C:0.07, G:0.00, T:0.48
Consensus pattern (14 bp):
TAAATTCATTTAAT
Found at i:481845 original size:48 final size:48
Alignment explanation
Indices: 481793--481902 Score: 121
Period size: 48 Copynumber: 2.3 Consensus size: 48
481783 TATTCCACAA
* *
481793 TCACCACCTCCGCCGCCGCCACCGCCAGTATACTCTCCCCCTCCCCCT
1 TCACCACCTCCACCGCCGCCACCACCAGTATACTCTCCCCCTCCCCCT
* * * * * * *
481841 TCACCACCTCCACCTCCGCCGCCACCTGTGTACTCTCCTCCTCCACCG
1 TCACCACCTCCACCGCCGCCACCACCAGTATACTCTCCCCCTCCCCCT
* *
481889 CCACCATCTCCACC
1 TCACCACCTCCACC
481903 TCCACCTGTT
Statistics
Matches: 51, Mismatches: 11, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
48 51 1.00
ACGTcount: A:0.14, C:0.59, G:0.09, T:0.18
Consensus pattern (48 bp):
TCACCACCTCCACCGCCGCCACCACCAGTATACTCTCCCCCTCCCCCT
Found at i:481905 original size:27 final size:26
Alignment explanation
Indices: 481844--481909 Score: 69
Period size: 27 Copynumber: 2.5 Consensus size: 26
481834 TCCCCCTTCA
* *
481844 CCACCTCCACCTCCGCCGCCACCTGT
1 CCACCTCCACCTCCACCGCCACCTCT
** *
481870 GTACTCTCCTCCTCCACCGCCACCATCT
1 CCAC-CTCCACCTCCACCGCCACC-TCT
481898 CCACCTCCACCT
1 CCACCTCCACCT
481910 GTTTATTCAC
Statistics
Matches: 30, Mismatches: 8, Indels: 3
0.73 0.20 0.07
Matches are distributed among these distances:
26 2 0.07
27 24 0.80
28 4 0.13
ACGTcount: A:0.14, C:0.59, G:0.08, T:0.20
Consensus pattern (26 bp):
CCACCTCCACCTCCACCGCCACCTCT
Found at i:481935 original size:42 final size:42
Alignment explanation
Indices: 481883--481993 Score: 114
Period size: 42 Copynumber: 2.6 Consensus size: 42
481873 CTCTCCTCCT
* * * * * *
481883 CCACCGCCACCATCTCCACCTCCACCTGTTTATTCACCTCGA
1 CCACCACCACCATCACCACCTCCACCAGTTTACTCACCACCA
* * * *
481925 CCTCCACCACCACCACCACCACCACCAGTTTACTCTCCACCA
1 CCACCACCACCATCACCACCTCCACCAGTTTACTCACCACCA
* *
481967 CCACCACCTCCATCCCCACCTCCACCA
1 CCACCACCACCATCACCACCTCCACCA
481994 TCACCCCCGC
Statistics
Matches: 54, Mismatches: 15, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
42 54 1.00
ACGTcount: A:0.23, C:0.57, G:0.04, T:0.17
Consensus pattern (42 bp):
CCACCACCACCATCACCACCTCCACCAGTTTACTCACCACCA
Found at i:481977 original size:15 final size:15
Alignment explanation
Indices: 481924--481998 Score: 57
Period size: 15 Copynumber: 5.0 Consensus size: 15
481914 ATTCACCTCG
481924 ACCTCCACCACCACC
1 ACCTCCACCACCACC
* **
481939 ACCACCACCACCAGTTT
1 ACCTCCACCACCA--CC
481956 ACTCTCCACCACCACC
1 AC-CTCCACCACCACC
*
481972 ACCTCCA--TCC-CC
1 ACCTCCACCACCACC
*
481984 ACCTCCACCATCACC
1 ACCTCCACCACCACC
481999 CCCGCNNNNN
Statistics
Matches: 45, Mismatches: 9, Indels: 12
0.68 0.14 0.18
Matches are distributed among these distances:
12 9 0.20
13 2 0.04
14 1 0.02
15 19 0.42
16 2 0.04
17 2 0.04
18 10 0.22
ACGTcount: A:0.25, C:0.60, G:0.01, T:0.13
Consensus pattern (15 bp):
ACCTCCACCACCACC
Found at i:482101 original size:42 final size:42
Alignment explanation
Indices: 482049--482159 Score: 114
Period size: 42 Copynumber: 2.6 Consensus size: 42
482039 CTCTCCTCCT
* * * * * *
482049 CCACCGCCACCATCTCCACCTCCACCTGTTTATTCACCTCGA
1 CCACCACCACCATCCCCACCTCCACCAGTTTACTCACCACCA
* * * * *
482091 CCTCCACCACCACCCCCCCCACCACCAGTTTACTCTCCACCA
1 CCACCACCACCATCCCCACCTCCACCAGTTTACTCACCACCA
*
482133 CCACCACCTCCATCCCCACCTCCACCA
1 CCACCACCACCATCCCCACCTCCACCA
482160 TCACCCCCGC
Statistics
Matches: 53, Mismatches: 16, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
42 53 1.00
ACGTcount: A:0.21, C:0.59, G:0.04, T:0.17
Consensus pattern (42 bp):
CCACCACCACCATCCCCACCTCCACCAGTTTACTCACCACCA
Found at i:482164 original size:12 final size:12
Alignment explanation
Indices: 482130--482212 Score: 60
Period size: 12 Copynumber: 6.7 Consensus size: 12
482120 TTACTCTCCA
482130 CCACCACCACCT
1 CCACCACCACCT
482142 CCATCC-CCACCT
1 CCA-CCACCACCT
* *
482154 CCACCATCACCC
1 CCACCACCACCT
* *
482166 CCGCCACCTACTTAT
1 CCACCACC-AC--CT
*
482181 CCATCACCACCT
1 CCACCACCACCT
* *
482193 CCACCATCTCCT
1 CCACCACCACCT
482205 CCACCACC
1 CCACCACC
482213 TTCACCAGTA
Statistics
Matches: 53, Mismatches: 13, Indels: 10
0.70 0.17 0.13
Matches are distributed among these distances:
11 2 0.04
12 39 0.74
13 4 0.08
14 2 0.04
15 6 0.11
ACGTcount: A:0.22, C:0.61, G:0.01, T:0.16
Consensus pattern (12 bp):
CCACCACCACCT
Found at i:482469 original size:21 final size:21
Alignment explanation
Indices: 482422--482473 Score: 59
Period size: 21 Copynumber: 2.5 Consensus size: 21
482412 TCTCCACCAC
* * *
482422 CACCACCACCTCCTGTTTATT
1 CACCACCACCTCCAGTTCACT
* *
482443 CCCCACCTCCTCCAGTTCACT
1 CACCACCACCTCCAGTTCACT
482464 CACCACCACC
1 CACCACCACC
482474 ACCATCCCCT
Statistics
Matches: 24, Mismatches: 7, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.19, C:0.54, G:0.04, T:0.23
Consensus pattern (21 bp):
CACCACCACCTCCAGTTCACT
Found at i:482639 original size:45 final size:44
Alignment explanation
Indices: 482553--482659 Score: 121
Period size: 45 Copynumber: 2.5 Consensus size: 44
482543 ACCGCCGCCA
*
482553 CCATCACCATCACCCCCA--CCCCCAATTCATTACAAACCACCT
1 CCATCACCATCACCCCCACCCCCCCAATCCATTACAAACCACCT
* **
482595 CCATCACCTTCACCCCCACCCCCACCAATCCATTATC-ATTCACCT
1 CCATCACCATCACCCCCACCCCC-CCAATCCATTA-CAAACCACCT
* *
482640 CCACCACCATCACCTCCACC
1 CCATCACCATCACCCCCACC
482660 GGCTCCCGTA
Statistics
Matches: 54, Mismatches: 7, Indels: 5
0.82 0.11 0.08
Matches are distributed among these distances:
42 17 0.31
44 3 0.06
45 33 0.61
46 1 0.02
ACGTcount: A:0.27, C:0.55, G:0.00, T:0.18
Consensus pattern (44 bp):
CCATCACCATCACCCCCACCCCCCCAATCCATTACAAACCACCT
Found at i:483794 original size:18 final size:18
Alignment explanation
Indices: 483767--483812 Score: 51
Period size: 18 Copynumber: 2.6 Consensus size: 18
483757 TATTCGTCCA
483767 ATATAT-ATTTCAA-ATT
1 ATATATAATTTCAATATT
* *
483783 ATATATGAATTTTAATTTT
1 ATATAT-AATTTCAATATT
483802 ATATATAATTT
1 ATATATAATTT
483813 GATCAATAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
16 6 0.24
18 11 0.44
19 8 0.32
ACGTcount: A:0.41, C:0.02, G:0.02, T:0.54
Consensus pattern (18 bp):
ATATATAATTTCAATATT
Found at i:484213 original size:19 final size:21
Alignment explanation
Indices: 484179--484221 Score: 63
Period size: 19 Copynumber: 2.1 Consensus size: 21
484169 TATGTTCTTG
484179 TAATATTAATATTTTAAAATT
1 TAATATTAATATTTTAAAATT
*
484200 TAAT-TTAA-ATTTTAAATTT
1 TAATATTAATATTTTAAAATT
484219 TAA
1 TAA
484222 ACTTAAATTC
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 13 0.62
20 4 0.19
21 4 0.19
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (21 bp):
TAATATTAATATTTTAAAATT
Found at i:484229 original size:20 final size:19
Alignment explanation
Indices: 484184--484230 Score: 58
Period size: 20 Copynumber: 2.4 Consensus size: 19
484174 TCTTGTAATA
*
484184 TTAATATTTTAAAATTTAAT
1 TTAA-ATTTTAAAATTTAAC
*
484204 TTAAATTTTAAATTTTAAAC
1 TTAAATTTTAAAATTT-AAC
484224 TTAAATT
1 TTAAATT
484231 CGAGATTAAT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
19 11 0.46
20 13 0.54
ACGTcount: A:0.45, C:0.02, G:0.00, T:0.53
Consensus pattern (19 bp):
TTAAATTTTAAAATTTAAC
Found at i:497514 original size:33 final size:33
Alignment explanation
Indices: 497477--497539 Score: 76
Period size: 33 Copynumber: 1.9 Consensus size: 33
497467 CGTATAACAT
497477 TTGAACTACTA-C-AATCAAAATTTCATGTATCGA
1 TTGAACTA-TACCAAATCAAAATTT-ATGTATCGA
* *
497510 TTGAATTATACCAAATTAAAATTTATGTAT
1 TTGAACTATACCAAATCAAAATTTATGTAT
497540 TAAATTATAC
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
32 2 0.08
33 14 0.54
34 10 0.38
ACGTcount: A:0.41, C:0.13, G:0.08, T:0.38
Consensus pattern (33 bp):
TTGAACTATACCAAATCAAAATTTATGTATCGA
Found at i:498922 original size:20 final size:20
Alignment explanation
Indices: 498897--498936 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
498887 CATGACGGAA
498897 GCAGC-AACAGAAACAGAAAC
1 GCAGCAAACAGAAACA-AAAC
*
498917 GCAGCAAACAGTAACAAAAC
1 GCAGCAAACAGAAACAAAAC
498937 AACAATAGGA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 9 0.50
21 9 0.50
ACGTcount: A:0.55, C:0.25, G:0.17, T:0.03
Consensus pattern (20 bp):
GCAGCAAACAGAAACAAAAC
Found at i:499963 original size:9 final size:10
Alignment explanation
Indices: 499947--499993 Score: 51
Period size: 9 Copynumber: 4.5 Consensus size: 10
499937 TATATAGGAG
499947 TATATATTTT
1 TATATATTTT
499957 T-TATATTTT
1 TATATATTTT
499966 TATATATTTAT
1 TATATATTT-T
*
499977 ATACATACTTTT
1 -TATATA-TTTT
499989 TATAT
1 TATAT
499994 TTTATGATAG
Statistics
Matches: 31, Mismatches: 2, Indels: 7
0.77 0.05 0.17
Matches are distributed among these distances:
9 9 0.29
10 8 0.26
11 5 0.16
12 6 0.19
13 3 0.10
ACGTcount: A:0.32, C:0.04, G:0.00, T:0.64
Consensus pattern (10 bp):
TATATATTTT
Found at i:509480 original size:26 final size:23
Alignment explanation
Indices: 509416--509480 Score: 60
Period size: 28 Copynumber: 2.7 Consensus size: 23
509406 ATATTTCTTT
*
509416 TATATATAAATATA-TTTTTCTA
1 TATATATACATATACTTTTTCTA
*
509438 TATATTTACATGCATACTTTTTGTACTA
1 TATATATACAT--ATAC-TTTT-T-CTA
509466 TATATATACATATAC
1 TATATATACATATAC
509481 ACTTATTTTT
Statistics
Matches: 34, Mismatches: 3, Indels: 8
0.76 0.07 0.18
Matches are distributed among these distances:
22 9 0.26
24 3 0.09
26 8 0.24
27 1 0.03
28 13 0.38
ACGTcount: A:0.37, C:0.11, G:0.03, T:0.49
Consensus pattern (23 bp):
TATATATACATATACTTTTTCTA
Found at i:509904 original size:5 final size:5
Alignment explanation
Indices: 509890--509918 Score: 51
Period size: 5 Copynumber: 6.0 Consensus size: 5
509880 ACATAAGTGC
509890 TTTA- TTTAT TTTAT TTTAT TTTAT TTTAT
1 TTTAT TTTAT TTTAT TTTAT TTTAT TTTAT
509919 ATTGTTTCAC
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
4 4 0.17
5 20 0.83
ACGTcount: A:0.21, C:0.00, G:0.00, T:0.79
Consensus pattern (5 bp):
TTTAT
Found at i:511677 original size:31 final size:31
Alignment explanation
Indices: 511631--511690 Score: 84
Period size: 31 Copynumber: 1.9 Consensus size: 31
511621 CTAAATTAGT
* **
511631 CTTGAACTTGATAATTGTTCTTATATTGGTG
1 CTTGAACATGATAATTGTTCCCATATTGGTG
*
511662 CTTGAACATGGTAATTGTTCCCATATTGG
1 CTTGAACATGATAATTGTTCCCATATTGG
511691 GGTCTAAAAT
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
31 25 1.00
ACGTcount: A:0.23, C:0.13, G:0.20, T:0.43
Consensus pattern (31 bp):
CTTGAACATGATAATTGTTCCCATATTGGTG
Found at i:517453 original size:11 final size:12
Alignment explanation
Indices: 517437--517497 Score: 52
Period size: 13 Copynumber: 4.8 Consensus size: 12
517427 AATAATATTC
517437 AAAAATTATATA
1 AAAAATTATATA
517449 AAAATATTATATA
1 AAAA-ATTATATA
** *
517462 AACTAAAAAAT-TT
1 AA--AAATTATATA
517475 AAAAATTATATA
1 AAAAATTATATA
517487 AAAATATTATA
1 AAAA-ATTATA
517498 ATATTTAAAA
Statistics
Matches: 38, Mismatches: 6, Indels: 9
0.72 0.11 0.17
Matches are distributed among these distances:
11 5 0.13
12 9 0.24
13 19 0.50
14 3 0.08
15 2 0.05
ACGTcount: A:0.64, C:0.02, G:0.00, T:0.34
Consensus pattern (12 bp):
AAAAATTATATA
Found at i:532850 original size:20 final size:20
Alignment explanation
Indices: 532825--532864 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
532815 ATTTAAGTAT
532825 TAAAAGATATTTATTAATTA
1 TAAAAGATATTTATTAATTA
532845 TAAAAGATATTTATTAATTA
1 TAAAAGATATTTATTAATTA
532865 AATAATTATA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.50, C:0.00, G:0.05, T:0.45
Consensus pattern (20 bp):
TAAAAGATATTTATTAATTA
Found at i:533108 original size:19 final size:19
Alignment explanation
Indices: 533078--533118 Score: 66
Period size: 19 Copynumber: 2.2 Consensus size: 19
533068 GAAAAGCAGG
533078 AAAGAAAGGAAGAAAGGAGA
1 AAAGAAAGGAAGAAAGG-GA
533098 AAAGAAA-GAAGAAAGGGA
1 AAAGAAAGGAAGAAAGGGA
533116 AAA
1 AAA
533119 TTTGAAGGTT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
18 5 0.24
19 9 0.43
20 7 0.33
ACGTcount: A:0.68, C:0.00, G:0.32, T:0.00
Consensus pattern (19 bp):
AAAGAAAGGAAGAAAGGGA
Found at i:552354 original size:31 final size:31
Alignment explanation
Indices: 552319--552385 Score: 75
Period size: 31 Copynumber: 2.2 Consensus size: 31
552309 AAAAAAAAAA
* *
552319 TTAAG-CTCCAATGTGGGAA-AACTTGCCTAGT
1 TTAAGTCT-CAATGTGGGAACAA-TTACCAAGT
*
552350 TTAAGTCTTAATGTGGGAACAATTACCAAGT
1 TTAAGTCTCAATGTGGGAACAATTACCAAGT
552381 TTAAG
1 TTAAG
552386 GTTTAACTTA
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
31 27 0.87
32 4 0.13
ACGTcount: A:0.33, C:0.15, G:0.21, T:0.31
Consensus pattern (31 bp):
TTAAGTCTCAATGTGGGAACAATTACCAAGT
Found at i:552815 original size:16 final size:16
Alignment explanation
Indices: 552793--552861 Score: 111
Period size: 16 Copynumber: 4.2 Consensus size: 16
552783 TTTGGTTCGC
552793 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
* *
552809 CGTATTGGATTAGAGA
1 TGTATTGGATTAGAGG
552825 TGTATTGGGATTAGAGG
1 TGTATT-GGATTAGAGG
552842 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
552858 TGTA
1 TGTA
552862 ATAGCTAATC
Statistics
Matches: 48, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
16 33 0.69
17 15 0.31
ACGTcount: A:0.26, C:0.01, G:0.36, T:0.36
Consensus pattern (16 bp):
TGTATTGGATTAGAGG
Found at i:552839 original size:33 final size:32
Alignment explanation
Indices: 552793--552861 Score: 111
Period size: 33 Copynumber: 2.1 Consensus size: 32
552783 TTTGGTTCGC
552793 TGTATTGGATTAGAGGCGTATTGGATTAGAGA
1 TGTATTGGATTAGAGGCGTATTGGATTAGAGA
* *
552825 TGTATTGGGATTAGAGGTGTATTGGATTAGAGG
1 TGTATT-GGATTAGAGGCGTATTGGATTAGAGA
552858 TGTA
1 TGTA
552862 ATAGCTAATC
Statistics
Matches: 34, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
32 6 0.18
33 28 0.82
ACGTcount: A:0.26, C:0.01, G:0.36, T:0.36
Consensus pattern (32 bp):
TGTATTGGATTAGAGGCGTATTGGATTAGAGA
Found at i:552926 original size:44 final size:45
Alignment explanation
Indices: 552842--552932 Score: 121
Period size: 45 Copynumber: 2.0 Consensus size: 45
552832 GGATTAGAGG
* * *
552842 TGTATTGGATTAGAGGTGTAATAGCTAATCCACTGTTTGGTTGAA
1 TGTAATGGAATAGAGGCGTAATAGCTAATCCACTGTTTGGTTGAA
***
552887 TGTAATGGAATAGAGGCGTAATAG-TAATCTTGTGTTTGGTTGAA
1 TGTAATGGAATAGAGGCGTAATAGCTAATCCACTGTTTGGTTGAA
552931 TG
1 TG
552933 GAATAGAGGT
Statistics
Matches: 40, Mismatches: 6, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
44 19 0.47
45 21 0.52
ACGTcount: A:0.27, C:0.07, G:0.29, T:0.37
Consensus pattern (45 bp):
TGTAATGGAATAGAGGCGTAATAGCTAATCCACTGTTTGGTTGAA
Found at i:553131 original size:17 final size:18
Alignment explanation
Indices: 553098--553131 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
553088 TATTATTAAC
*
553098 TATATTTTAATTAAAATA
1 TATAATTTAATTAAAATA
553116 TATAATTTAA-TAAAAT
1 TATAATTTAATTAAAAT
553132 TCTTAATAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (18 bp):
TATAATTTAATTAAAATA
Found at i:556290 original size:33 final size:33
Alignment explanation
Indices: 556251--556360 Score: 159
Period size: 33 Copynumber: 3.3 Consensus size: 33
556241 ATTATAAAGC
556251 ATGTATAATTGACCTAAAATTAATTGTTGGTGT
1 ATGTATAATTGACCTAAAATTAATTGTTGGTGT
* *
556284 ATGTATAATTGACCTAAAATTAATTCTTGGTTT
1 ATGTATAATTGACCTAAAATTAATTGTTGGTGT
* * *
556317 AT-TTTTATTTACCCTAAAATTAATTGTTGGTGT
1 ATGTATAATTGA-CCTAAAATTAATTGTTGGTGT
556350 ATGTATAATTG
1 ATGTATAATTG
556361 TTGGTGTATG
Statistics
Matches: 65, Mismatches: 10, Indels: 3
0.83 0.13 0.04
Matches are distributed among these distances:
32 6 0.09
33 54 0.83
34 5 0.08
ACGTcount: A:0.32, C:0.07, G:0.15, T:0.46
Consensus pattern (33 bp):
ATGTATAATTGACCTAAAATTAATTGTTGGTGT
Found at i:556360 original size:18 final size:18
Alignment explanation
Indices: 556337--556378 Score: 84
Period size: 18 Copynumber: 2.3 Consensus size: 18
556327 ACCCTAAAAT
556337 TAATTGTTGGTGTATGTA
1 TAATTGTTGGTGTATGTA
556355 TAATTGTTGGTGTATGTA
1 TAATTGTTGGTGTATGTA
556373 TAATTG
1 TAATTG
556379 ACCTAAAATT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.24, C:0.00, G:0.26, T:0.50
Consensus pattern (18 bp):
TAATTGTTGGTGTATGTA
Found at i:557762 original size:28 final size:28
Alignment explanation
Indices: 557729--557841 Score: 75
Period size: 28 Copynumber: 3.6 Consensus size: 28
557719 TTTTTATTAT
557729 AATATTTTATTATTTCAGTTTATTTCAC
1 AATATTTTATTATTTCAGTTTATTTCAC
* * *
557757 AATATTTATTTTAAGTATT-AGATATATTATACATT
1 AATATTT-TATT-A-T-TTCAG-TTTATT-T-CA-C
*
557792 AATATTTATTTTATTATTTCAGTTCATTTCAC
1 AATA--T--TTTATTATTTCAGTTTATTTCAC
557824 AATATTTTATTATTTCAG
1 AATATTTTATTATTTCAG
557842 CTTTTATTAT
Statistics
Matches: 65, Mismatches: 7, Indels: 26
0.66 0.07 0.27
Matches are distributed among these distances:
28 20 0.31
29 3 0.05
30 2 0.03
31 3 0.05
32 11 0.17
33 3 0.05
34 3 0.05
35 10 0.15
36 3 0.05
37 2 0.03
38 3 0.05
39 2 0.03
ACGTcount: A:0.33, C:0.08, G:0.04, T:0.55
Consensus pattern (28 bp):
AATATTTTATTATTTCAGTTTATTTCAC
Found at i:557767 original size:32 final size:32
Alignment explanation
Indices: 557731--557830 Score: 105
Period size: 32 Copynumber: 3.0 Consensus size: 32
557721 TTTATTATAA
557731 TATTTTATTATTTCAGTTTATTTCACAATATT
1 TATTTTATTATTTCAGTTTATTTCACAATATT
* * *
557763 TATTTTAAGTA-TT-AGATATATTATACATTAATATT
1 TATTTT-ATTATTTCAG-TTTATT-T-CA-CAATATT
*
557798 TATTTTATTATTTCAGTTCATTTCACAATATT
1 TATTTTATTATTTCAGTTTATTTCACAATATT
557830 T
1 T
557831 TATTATTTCA
Statistics
Matches: 54, Mismatches: 7, Indels: 14
0.72 0.09 0.19
Matches are distributed among these distances:
31 2 0.04
32 20 0.37
33 6 0.11
34 6 0.11
35 18 0.33
36 2 0.04
ACGTcount: A:0.32, C:0.08, G:0.04, T:0.56
Consensus pattern (32 bp):
TATTTTATTATTTCAGTTTATTTCACAATATT
Found at i:557848 original size:15 final size:15
Alignment explanation
Indices: 557828--557856 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
557818 TTTCACAATA
557828 TTTTATTATTTCAGC
1 TTTTATTATTTCAGC
557843 TTTTATTATTTCAG
1 TTTTATTATTTCAG
557857 TTTATTTCAC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.21, C:0.10, G:0.07, T:0.62
Consensus pattern (15 bp):
TTTTATTATTTCAGC
Found at i:563082 original size:15 final size:15
Alignment explanation
Indices: 563062--563090 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
563052 TAAACCTGTC
563062 TCAGCATGCTTCACG
1 TCAGCATGCTTCACG
563077 TCAGCATGCTTCAC
1 TCAGCATGCTTCAC
563091 CCAAAAACCA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.21, C:0.34, G:0.17, T:0.28
Consensus pattern (15 bp):
TCAGCATGCTTCACG
Found at i:564510 original size:19 final size:19
Alignment explanation
Indices: 564484--564521 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
564474 TTTATCAGAG
*
564484 CAAAAATAACTTA-TATTT
1 CAAAAATAAATTATTATTT
564502 CAAACAATAAATTATTATTT
1 CAAA-AATAAATTATTATTT
564522 AAATTTTATT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
18 4 0.24
19 8 0.47
20 5 0.29
ACGTcount: A:0.50, C:0.11, G:0.00, T:0.39
Consensus pattern (19 bp):
CAAAAATAAATTATTATTT
Found at i:564934 original size:3 final size:3
Alignment explanation
Indices: 564928--564959 Score: 64
Period size: 3 Copynumber: 10.7 Consensus size: 3
564918 ATATGTAAAT
564928 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
564960 TTACAAGTAC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
TTA
Found at i:575261 original size:73 final size:73
Alignment explanation
Indices: 575142--575287 Score: 283
Period size: 73 Copynumber: 2.0 Consensus size: 73
575132 TATTAAAATG
575142 TTTATTGTACTTTCAATAAGAATAACAGTAACAATGAACATAAAAGATGTTCATATGAACCTAGG
1 TTTATTGTACTTTCAATAAGAATAACAGTAACAATGAACATAAAAGATGTTCATATGAACCTAGG
575207 AATGGTAA
66 AATGGTAA
*
575215 TTTATTGTACTTTCATTAAGAATAACAGTAACAATGAACATAAAAGATGTTCATATGAACCTAGG
1 TTTATTGTACTTTCAATAAGAATAACAGTAACAATGAACATAAAAGATGTTCATATGAACCTAGG
575280 AATGGTAA
66 AATGGTAA
575288 AAGTAACATG
Statistics
Matches: 72, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
73 72 1.00
ACGTcount: A:0.43, C:0.11, G:0.15, T:0.31
Consensus pattern (73 bp):
TTTATTGTACTTTCAATAAGAATAACAGTAACAATGAACATAAAAGATGTTCATATGAACCTAGG
AATGGTAA
Found at i:585571 original size:21 final size:21
Alignment explanation
Indices: 585545--585585 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
585535 ATCTGCTCAA
* *
585545 ACTCCACCTGTTTTGGAGTAC
1 ACTCCACCTGCTGTGGAGTAC
585566 ACTCCACCTGCTGTGGAGTA
1 ACTCCACCTGCTGTGGAGTA
585586 TTGCTCGTCT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.20, C:0.29, G:0.22, T:0.29
Consensus pattern (21 bp):
ACTCCACCTGCTGTGGAGTAC
Found at i:594874 original size:18 final size:18
Alignment explanation
Indices: 594851--594885 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
594841 GAGTATCAAA
*
594851 TTAAATGTTAAAATAAAT
1 TTAAATGCTAAAATAAAT
*
594869 TTAAATGCTAAATTAAA
1 TTAAATGCTAAAATAAA
594886 AAAAAATTCA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.54, C:0.03, G:0.06, T:0.37
Consensus pattern (18 bp):
TTAAATGCTAAAATAAAT
Found at i:610857 original size:70 final size:70
Alignment explanation
Indices: 610736--610871 Score: 213
Period size: 70 Copynumber: 1.9 Consensus size: 70
610726 AATACTAAAT
* *
610736 ATGTTAGATAAAAGAGCAAATTAACCTTTCTGTTAAAAATTTTATCTATTTCTATTGTTAAAAAT
1 ATGTTAGATAAAAGAGCAAATTAACCCTTCTGTTAAAAATTTCATCTATTTCTATTGTTAAAAAT
610801 TAGGC
66 TAGGC
*
610806 ATGTTAGATAAAAGAGTAAA-TAAGCCCTTCTGTTAAAAATTTCAT-TAATTTCTATTGTTAAAA
1 ATGTTAGATAAAAGAGCAAATTAA-CCCTTCTGTTAAAAATTTCATCT-ATTTCTATTGTTAAAA
610869 ATT
64 ATT
610872 GCTCATTGTA
Statistics
Matches: 61, Mismatches: 3, Indels: 4
0.90 0.04 0.06
Matches are distributed among these distances:
69 4 0.07
70 57 0.93
ACGTcount: A:0.40, C:0.10, G:0.11, T:0.40
Consensus pattern (70 bp):
ATGTTAGATAAAAGAGCAAATTAACCCTTCTGTTAAAAATTTCATCTATTTCTATTGTTAAAAAT
TAGGC
Found at i:618135 original size:13 final size:15
Alignment explanation
Indices: 618108--618139 Score: 50
Period size: 13 Copynumber: 2.3 Consensus size: 15
618098 AGTAGAAAAC
618108 AAAAAGAAACAATGA
1 AAAAAGAAACAATGA
618123 AAAAAG-AAC-ATGA
1 AAAAAGAAACAATGA
618136 AAAA
1 AAAA
618140 TAGGGAGAAG
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
13 8 0.47
14 3 0.18
15 6 0.35
ACGTcount: A:0.75, C:0.06, G:0.12, T:0.06
Consensus pattern (15 bp):
AAAAAGAAACAATGA
Found at i:618616 original size:18 final size:18
Alignment explanation
Indices: 618593--618629 Score: 65
Period size: 18 Copynumber: 2.1 Consensus size: 18
618583 GTGTGGCTCA
618593 CATGGCCTGACACACAAG
1 CATGGCCTGACACACAAG
*
618611 CATGGCCTGGCACACAAG
1 CATGGCCTGACACACAAG
618629 C
1 C
618630 GTGTGACTCA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.30, C:0.35, G:0.24, T:0.11
Consensus pattern (18 bp):
CATGGCCTGACACACAAG
Found at i:627069 original size:18 final size:18
Alignment explanation
Indices: 627042--627134 Score: 150
Period size: 18 Copynumber: 5.2 Consensus size: 18
627032 CCCAACTACT
*
627042 GTATACGTGAACAGTACC
1 GTATACGTGAATAGTACC
* *
627060 GTATATGTGAATAGTGCC
1 GTATACGTGAATAGTACC
627078 GTATACGTGAATAGTACC
1 GTATACGTGAATAGTACC
*
627096 GTATACGTGAATAGTGCC
1 GTATACGTGAATAGTACC
627114 GTATACGTGAATAGTACC
1 GTATACGTGAATAGTACC
627132 GTA
1 GTA
627135 AACGGTCGTA
Statistics
Matches: 68, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
18 68 1.00
ACGTcount: A:0.31, C:0.16, G:0.25, T:0.28
Consensus pattern (18 bp):
GTATACGTGAATAGTACC
Found at i:627094 original size:36 final size:36
Alignment explanation
Indices: 627042--627134 Score: 168
Period size: 36 Copynumber: 2.6 Consensus size: 36
627032 CCCAACTACT
* *
627042 GTATACGTGAACAGTACCGTATATGTGAATAGTGCC
1 GTATACGTGAATAGTACCGTATACGTGAATAGTGCC
627078 GTATACGTGAATAGTACCGTATACGTGAATAGTGCC
1 GTATACGTGAATAGTACCGTATACGTGAATAGTGCC
627114 GTATACGTGAATAGTACCGTA
1 GTATACGTGAATAGTACCGTA
627135 AACGGTCGTA
Statistics
Matches: 55, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
36 55 1.00
ACGTcount: A:0.31, C:0.16, G:0.25, T:0.28
Consensus pattern (36 bp):
GTATACGTGAATAGTACCGTATACGTGAATAGTGCC
Found at i:628794 original size:32 final size:33
Alignment explanation
Indices: 628729--628796 Score: 95
Period size: 33 Copynumber: 2.1 Consensus size: 33
628719 AGAATAGTTG
628729 ATATTTTCTGATGTTTAGATGATTTTATATAAA
1 ATATTTTCTGATGTTTAGATGATTTTATATAAA
* *
628762 ATATTTTCTGTTGTTT-GATGAATTTTCT-TAAA
1 ATATTTTCTGATGTTTAGATG-ATTTTATATAAA
628794 ATA
1 ATA
628797 AATTTCTAAA
Statistics
Matches: 32, Mismatches: 2, Indels: 3
0.86 0.05 0.08
Matches are distributed among these distances:
32 11 0.34
33 21 0.66
ACGTcount: A:0.31, C:0.04, G:0.12, T:0.53
Consensus pattern (33 bp):
ATATTTTCTGATGTTTAGATGATTTTATATAAA
Found at i:629422 original size:19 final size:19
Alignment explanation
Indices: 629384--629423 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
629374 AAAATTATTA
**
629384 ATATATTTATAATTGTAAT
1 ATATATTTATAATTAAAAT
*
629403 ATATATTTATTATTAAAAT
1 ATATATTTATAATTAAAAT
629422 AT
1 AT
629424 TAATATTAAA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.45, C:0.00, G:0.03, T:0.53
Consensus pattern (19 bp):
ATATATTTATAATTAAAAT
Found at i:640577 original size:13 final size:14
Alignment explanation
Indices: 640561--640596 Score: 51
Period size: 13 Copynumber: 2.8 Consensus size: 14
640551 CAATCTCATA
640561 TCTCAATTTCAA-T
1 TCTCAATTTCAATT
640574 TCTCAA-TTCAATT
1 TCTCAATTTCAATT
640587 TCTC-ATTTCA
1 TCTCAATTTCA
640597 TTCCAATAGC
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
12 6 0.29
13 15 0.71
ACGTcount: A:0.28, C:0.25, G:0.00, T:0.47
Consensus pattern (14 bp):
TCTCAATTTCAATT
Found at i:640586 original size:18 final size:19
Alignment explanation
Indices: 640548--640588 Score: 59
Period size: 18 Copynumber: 2.2 Consensus size: 19
640538 TGGTTCATGT
640548 TTTCAATCTCATATCTCAA
1 TTTCAATCTCATATCTCAA
640567 TTTCAATTCTCA-AT-TCAA
1 TTTCAA-TCTCATATCTCAA
640585 TTTC
1 TTTC
640589 TCATTTCATT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
18 8 0.38
19 8 0.38
20 5 0.24
ACGTcount: A:0.29, C:0.24, G:0.00, T:0.46
Consensus pattern (19 bp):
TTTCAATCTCATATCTCAA
Found at i:640778 original size:39 final size:38
Alignment explanation
Indices: 640711--640845 Score: 101
Period size: 39 Copynumber: 3.4 Consensus size: 38
640701 ACCAATATGG
* * *
640711 CACCCAGTGCCTCATCGGATAGTTCGAAGCAATATTTGA
1 CACCCAGTGCCTCATCGGCTAG-CCGAAGAAATATTTGA
* * * *
640750 CACCCAGTGTCTCATCGGCCTAGCCGAAGTAA-AGTTGG
1 CACCCAGTGCCTCATCGG-CTAGCCGAAGAAATATTTGA
* * * * *
640788 TACCCAGTACCTCATCGAATCTATCCGAAGAAATATAGTGA
1 CACCCAGTGCCTCATCG--GCTAGCCGAAGAAATAT-TTGA
*
640829 CACCCAGTGTCTCATCG
1 CACCCAGTGCCTCATCG
640846 ACTCGAGGTC
Statistics
Matches: 73, Mismatches: 18, Indels: 8
0.74 0.18 0.08
Matches are distributed among these distances:
38 18 0.25
39 35 0.48
40 4 0.05
41 16 0.22
ACGTcount: A:0.28, C:0.28, G:0.20, T:0.24
Consensus pattern (38 bp):
CACCCAGTGCCTCATCGGCTAGCCGAAGAAATATTTGA
Found at i:641111 original size:18 final size:19
Alignment explanation
Indices: 641085--641123 Score: 62
Period size: 18 Copynumber: 2.1 Consensus size: 19
641075 TTTCAATTCA
641085 ATTCAAATAATCAATATAT
1 ATTCAAATAATCAATATAT
*
641104 ATTC-AATATTCAATATAT
1 ATTCAAATAATCAATATAT
641122 AT
1 AT
641124 ATCTATATAT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 15 0.79
19 4 0.21
ACGTcount: A:0.49, C:0.10, G:0.00, T:0.41
Consensus pattern (19 bp):
ATTCAAATAATCAATATAT
Found at i:642449 original size:5 final size:5
Alignment explanation
Indices: 642439--642495 Score: 62
Period size: 5 Copynumber: 11.0 Consensus size: 5
642429 TTACTTATTT
* *
642439 ATATA ATATAA TATATA ATATA ATATA CTATA ATATA ATAATA ATTTA
1 ATATA ATAT-A -ATATA ATATA ATATA ATATA ATATA AT-ATA ATATA
642487 ATAT- ATATA
1 ATATA ATATA
642496 TTTTAACACA
Statistics
Matches: 44, Mismatches: 4, Indels: 8
0.79 0.07 0.14
Matches are distributed among these distances:
4 4 0.09
5 29 0.66
6 7 0.16
7 4 0.09
ACGTcount: A:0.56, C:0.02, G:0.00, T:0.42
Consensus pattern (5 bp):
ATATA
Found at i:642455 original size:12 final size:12
Alignment explanation
Indices: 642438--642493 Score: 69
Period size: 12 Copynumber: 4.5 Consensus size: 12
642428 TTTACTTATT
642438 TATATAATATAA
1 TATATAATATAA
642450 TATATAATATAATA
1 TATATAATAT-A-A
642464 TACTATAATATAA
1 TA-TATAATATAA
*
642477 TA-ATAATTTAA
1 TATATAATATAA
642488 TATATA
1 TATATA
642494 TATTTTAACA
Statistics
Matches: 39, Mismatches: 1, Indels: 8
0.81 0.02 0.17
Matches are distributed among these distances:
11 10 0.26
12 13 0.33
13 4 0.10
14 4 0.10
15 8 0.21
ACGTcount: A:0.55, C:0.02, G:0.00, T:0.43
Consensus pattern (12 bp):
TATATAATATAA
Found at i:642508 original size:26 final size:26
Alignment explanation
Indices: 642440--642495 Score: 69
Period size: 26 Copynumber: 2.2 Consensus size: 26
642430 TACTTATTTA
*
642440 TATAATATAATATATAATATAATATAC
1 TATAATATAACA-ATAATATAATATAC
* *
642467 TATAATATAATAATAATTTAATATA-
1 TATAATATAACAATAATATAATATAC
642492 TATA
1 TATA
642496 TTTTAACACA
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
25 4 0.14
26 12 0.43
27 12 0.43
ACGTcount: A:0.55, C:0.02, G:0.00, T:0.43
Consensus pattern (26 bp):
TATAATATAACAATAATATAATATAC
Found at i:643493 original size:15 final size:15
Alignment explanation
Indices: 643448--643555 Score: 87
Period size: 15 Copynumber: 7.2 Consensus size: 15
643438 CCAATATCTC
643448 GATACCCATATCTTT
1 GATACCCATATCTTT
** *
643463 GACTTTCCA-ATATTT
1 GA-TACCCATATCTTT
643478 GATACCCATATCTTT
1 GATACCCATATCTTT
** *
643493 GACTTTCCA-ATATTT
1 GA-TACCCATATCTTT
643508 GATACCCATATCTTT
1 GATACCCATATCTTT
** *
643523 GACTTTCCAT-TATTT
1 GA-TACCCATATCTTT
643538 GATACCCATATCTTT
1 GATACCCATATCTTT
643553 GAT
1 GAT
643556 TTTCCATAAA
Statistics
Matches: 69, Mismatches: 18, Indels: 12
0.70 0.18 0.12
Matches are distributed among these distances:
14 13 0.19
15 43 0.62
16 13 0.19
ACGTcount: A:0.26, C:0.23, G:0.07, T:0.44
Consensus pattern (15 bp):
GATACCCATATCTTT
Found at i:643562 original size:30 final size:30
Alignment explanation
Indices: 643438--643561 Score: 212
Period size: 30 Copynumber: 4.1 Consensus size: 30
643428 TTTTATTATG
*
643438 CCAATATCTCGATACCCATATCTTTGACTTT
1 CCAATAT-TTGATACCCATATCTTTGACTTT
643469 CCAATATTTGATACCCATATCTTTGACTTT
1 CCAATATTTGATACCCATATCTTTGACTTT
643499 CCAATATTTGATACCCATATCTTTGACTTT
1 CCAATATTTGATACCCATATCTTTGACTTT
* *
643529 CCATTATTTGATACCCATATCTTTGATTTT
1 CCAATATTTGATACCCATATCTTTGACTTT
643559 CCA
1 CCA
643562 TAAATATGGA
Statistics
Matches: 90, Mismatches: 3, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
30 83 0.92
31 7 0.08
ACGTcount: A:0.26, C:0.25, G:0.06, T:0.43
Consensus pattern (30 bp):
CCAATATTTGATACCCATATCTTTGACTTT
Found at i:648186 original size:15 final size:15
Alignment explanation
Indices: 648144--648251 Score: 78
Period size: 15 Copynumber: 7.2 Consensus size: 15
648134 CCAATATCTC
*
648144 GATACCCATATCTTT
1 GATACCCATATATTT
**
648159 GACTTTCCA-ATATTT
1 GA-TACCCATATATTT
648174 GATACCCATATATTT
1 GATACCCATATATTT
***
648189 GACTTTTCA-ATATTT
1 GA-TACCCATATATTT
*
648204 GATACCCATATCTTT
1 GATACCCATATATTT
**
648219 GACTTTCCAT-TATTT
1 GA-TACCCATATATTT
*
648234 GATACCCATATCTTT
1 GATACCCATATATTT
648249 GAT
1 GAT
648252 TTTCCATAAA
Statistics
Matches: 69, Mismatches: 18, Indels: 12
0.70 0.18 0.12
Matches are distributed among these distances:
14 12 0.17
15 45 0.65
16 12 0.17
ACGTcount: A:0.27, C:0.21, G:0.07, T:0.44
Consensus pattern (15 bp):
GATACCCATATATTT
Found at i:648258 original size:30 final size:30
Alignment explanation
Indices: 648134--648257 Score: 194
Period size: 30 Copynumber: 4.1 Consensus size: 30
648124 TTTTATTATG
*
648134 CCAATATCTCGATACCCATATCTTTGACTTT
1 CCAATAT-TTGATACCCATATCTTTGACTTT
*
648165 CCAATATTTGATACCCATATATTTGACTTT
1 CCAATATTTGATACCCATATCTTTGACTTT
*
648195 TCAATATTTGATACCCATATCTTTGACTTT
1 CCAATATTTGATACCCATATCTTTGACTTT
* *
648225 CCATTATTTGATACCCATATCTTTGATTTT
1 CCAATATTTGATACCCATATCTTTGACTTT
648255 CCA
1 CCA
648258 TAAATATGGA
Statistics
Matches: 86, Mismatches: 7, Indels: 1
0.91 0.07 0.01
Matches are distributed among these distances:
30 79 0.92
31 7 0.08
ACGTcount: A:0.27, C:0.23, G:0.06, T:0.44
Consensus pattern (30 bp):
CCAATATTTGATACCCATATCTTTGACTTT
Found at i:662051 original size:18 final size:18
Alignment explanation
Indices: 662024--662116 Score: 150
Period size: 18 Copynumber: 5.2 Consensus size: 18
662014 TACGACCGTT
662024 TACGGTACTATTCACGTA
1 TACGGTACTATTCACGTA
*
662042 TACGGCACTATTCACGTA
1 TACGGTACTATTCACGTA
*
662060 TACAGTACTATTCACGTA
1 TACGGTACTATTCACGTA
*
662078 TACGGCACTATTCACGTA
1 TACGGTACTATTCACGTA
*
662096 TACGGTACTGTTCACGTA
1 TACGGTACTATTCACGTA
662114 TAC
1 TAC
662117 AGTAGTTGGG
Statistics
Matches: 68, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
18 68 1.00
ACGTcount: A:0.28, C:0.25, G:0.16, T:0.31
Consensus pattern (18 bp):
TACGGTACTATTCACGTA
Found at i:667101 original size:22 final size:22
Alignment explanation
Indices: 667072--667122 Score: 95
Period size: 22 Copynumber: 2.4 Consensus size: 22
667062 TAGTTCCATA
667072 CAAG-TTAAGATATCAATATTT
1 CAAGATTAAGATATCAATATTT
667093 CAAGATTAAGATATCAATATTT
1 CAAGATTAAGATATCAATATTT
667115 CAAGATTA
1 CAAGATTA
667123 TAACCTTTTA
Statistics
Matches: 29, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
21 4 0.14
22 25 0.86
ACGTcount: A:0.45, C:0.10, G:0.10, T:0.35
Consensus pattern (22 bp):
CAAGATTAAGATATCAATATTT
Found at i:667530 original size:23 final size:22
Alignment explanation
Indices: 667493--667536 Score: 61
Period size: 23 Copynumber: 2.0 Consensus size: 22
667483 ATTTTAGCTC
*
667493 TAATAAAAATGTTAAATTTGGT
1 TAATAAAAATGTTAAAGTTGGT
*
667515 TAATAAAAAATTTTAAAGTTGG
1 TAAT-AAAAATGTTAAAGTTGG
667537 GAAAAAAATA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
22 4 0.21
23 15 0.79
ACGTcount: A:0.48, C:0.00, G:0.14, T:0.39
Consensus pattern (22 bp):
TAATAAAAATGTTAAAGTTGGT
Found at i:672051 original size:28 final size:26
Alignment explanation
Indices: 672020--672084 Score: 67
Period size: 27 Copynumber: 2.4 Consensus size: 26
672010 ATGAACTTTT
* * *
672020 TTTTAAAAAAATTAAGGTTTAATCAAAA
1 TTTTAAAAAAA--AAAGTATAATAAAAA
672048 TTTTCAAAAAAAAAAGTATAATAAAAA
1 TTTT-AAAAAAAAAAGTATAATAAAAA
*
672075 TTTTTAAAAA
1 TTTTAAAAAA
672085 TTTTAGAGAC
Statistics
Matches: 32, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
26 5 0.16
27 16 0.50
28 4 0.12
29 7 0.22
ACGTcount: A:0.58, C:0.03, G:0.05, T:0.34
Consensus pattern (26 bp):
TTTTAAAAAAAAAAGTATAATAAAAA
Found at i:677919 original size:17 final size:17
Alignment explanation
Indices: 677897--677930 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
677887 AATAAATTAG
*
677897 ATTATTACATACTTATA
1 ATTATTACAAACTTATA
*
677914 ATTATTAGAAACTTATA
1 ATTATTACAAACTTATA
677931 TAAAATTTAA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.44, C:0.09, G:0.03, T:0.44
Consensus pattern (17 bp):
ATTATTACAAACTTATA
Found at i:686137 original size:24 final size:24
Alignment explanation
Indices: 686109--686160 Score: 68
Period size: 24 Copynumber: 2.2 Consensus size: 24
686099 TTAGCAAGTC
* *
686109 AAATAAACTATGCTAATAAATGCT
1 AAATAAACTATACTAATAAATACT
* *
686133 AAATATATTATACTAATAAATACT
1 AAATAAACTATACTAATAAATACT
686157 AAAT
1 AAAT
686161 CTTCTAAAAA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.54, C:0.10, G:0.04, T:0.33
Consensus pattern (24 bp):
AAATAAACTATACTAATAAATACT
Found at i:693310 original size:3 final size:3
Alignment explanation
Indices: 693302--693332 Score: 53
Period size: 3 Copynumber: 10.0 Consensus size: 3
693292 ACCATAACAT
693302 TTA TTA TTA TTA TTA TTA TTA TTA TTGA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TT-A TTA
693333 AATGGATGAT
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
3 24 0.89
4 3 0.11
ACGTcount: A:0.32, C:0.00, G:0.03, T:0.65
Consensus pattern (3 bp):
TTA
Found at i:694342 original size:3 final size:3
Alignment explanation
Indices: 694334--694363 Score: 60
Period size: 3 Copynumber: 10.0 Consensus size: 3
694324 CTAAATCCAA
694334 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
694364 GTGATTTGGA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
ATT
Found at i:703860 original size:26 final size:28
Alignment explanation
Indices: 703830--703882 Score: 74
Period size: 27 Copynumber: 2.0 Consensus size: 28
703820 TAACTCTCAA
703830 TCTTTA-TATTTTTTTAATT-AATTTGG
1 TCTTTATTATTTTTTTAATTAAATTTGG
* *
703856 TCTTTATTCTTTTTTTAGTTAAATTTG
1 TCTTTATTATTTTTTTAATTAAATTTG
703883 ACTATTAACA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
26 6 0.26
27 11 0.48
28 6 0.26
ACGTcount: A:0.21, C:0.06, G:0.08, T:0.66
Consensus pattern (28 bp):
TCTTTATTATTTTTTTAATTAAATTTGG
Found at i:706044 original size:3 final size:3
Alignment explanation
Indices: 706036--706064 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
706026 TTGAGGGGGT
706036 TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
706065 TAATTGGCAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
TTA
Found at i:706475 original size:14 final size:14
Alignment explanation
Indices: 706456--706486 Score: 62
Period size: 14 Copynumber: 2.2 Consensus size: 14
706446 TAGCATAAGG
706456 CACACATGATAGAT
1 CACACATGATAGAT
706470 CACACATGATAGAT
1 CACACATGATAGAT
706484 CAC
1 CAC
706487 GTGTCATTGT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.42, C:0.26, G:0.13, T:0.19
Consensus pattern (14 bp):
CACACATGATAGAT
Found at i:724424 original size:30 final size:30
Alignment explanation
Indices: 724388--724476 Score: 169
Period size: 30 Copynumber: 3.0 Consensus size: 30
724378 CGGGACTTTA
724388 GCCCGGATACATTTCCAGCACGAAGCCTGC
1 GCCCGGATACATTTCCAGCACGAAGCCTGC
*
724418 GCCCGGATACATTTCCAACACGAAGCCTGC
1 GCCCGGATACATTTCCAGCACGAAGCCTGC
724448 GCCCGGATACATTTCCAGCACGAAGCCTG
1 GCCCGGATACATTTCCAGCACGAAGCCTG
724477 TGGGACTTTA
Statistics
Matches: 57, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 57 1.00
ACGTcount: A:0.25, C:0.36, G:0.22, T:0.17
Consensus pattern (30 bp):
GCCCGGATACATTTCCAGCACGAAGCCTGC
Found at i:726033 original size:53 final size:53
Alignment explanation
Indices: 725877--726042 Score: 221
Period size: 53 Copynumber: 3.1 Consensus size: 53
725867 GACGAAAAAT
* **
725877 ATGTGATAAGTGTG-C-CCGTTTAAGACCATAGCTGGGCTATGGCATCGGTGCA
1 ATGTGATAA-TGTGACTCCGTATAAGACCATAGCTGGGCTATGGCATCGGTATA
725929 ATGTGATAATGTGACTCCGTATAAGACCATAGCTGGGCTATGGCATCGGTATA
1 ATGTGATAATGTGACTCCGTATAAGACCATAGCTGGGCTATGGCATCGGTATA
* * *
725982 ATGTGATAATGTGATTCCGTATAAGACCAT-GTCTGGGATATGGCTTCGGTATGA
1 ATGTGATAATGTGACTCCGTATAAGACCATAG-CTGGGCTATGGCATCGGTAT-A
726036 TATGTGA
1 -ATGTGA
726043 ACCGTGTAAG
Statistics
Matches: 103, Mismatches: 6, Indels: 7
0.89 0.05 0.06
Matches are distributed among these distances:
51 4 0.04
52 11 0.11
53 81 0.79
54 1 0.01
55 6 0.06
ACGTcount: A:0.26, C:0.16, G:0.28, T:0.30
Consensus pattern (53 bp):
ATGTGATAATGTGACTCCGTATAAGACCATAGCTGGGCTATGGCATCGGTATA
Found at i:730954 original size:34 final size:34
Alignment explanation
Indices: 730888--730966 Score: 86
Period size: 34 Copynumber: 2.3 Consensus size: 34
730878 GCTAGATCAA
* *
730888 ATATATATATATTCACCTTCGGTGATATCAAACC
1 ATATATATATATTCACCTTCGATGATACCAAACC
* * * * *
730922 ATATATATGTATTCACTTTTGATTATACCAAACT
1 ATATATATATATTCACCTTCGATGATACCAAACC
*
730956 ATACATATATA
1 ATATATATATA
730967 ATTATGTGCT
Statistics
Matches: 36, Mismatches: 9, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
34 36 1.00
ACGTcount: A:0.38, C:0.16, G:0.06, T:0.39
Consensus pattern (34 bp):
ATATATATATATTCACCTTCGATGATACCAAACC
Found at i:735916 original size:18 final size:18
Alignment explanation
Indices: 735893--735929 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
735883 TGATTTCATC
735893 TTACTTTCAT-TAAGTACT
1 TTACTTTCATATAA-TACT
735911 TTACTTTCATATAATACT
1 TTACTTTCATATAATACT
735929 T
1 T
735930 CATTTAAATA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
18 15 0.83
19 3 0.17
ACGTcount: A:0.30, C:0.16, G:0.03, T:0.51
Consensus pattern (18 bp):
TTACTTTCATATAATACT
Found at i:738724 original size:49 final size:49
Alignment explanation
Indices: 738671--738771 Score: 184
Period size: 49 Copynumber: 2.1 Consensus size: 49
738661 AAGAACAAGC
* *
738671 AACCATGATATTTGAAGCAATCTGTATTCATCCGAGATCAAGATTAGAT
1 AACCATGATACTTGAAGCAATCTGTATTCATCCGAGATCAAAATTAGAT
738720 AACCATGATACTTGAAGCAATCTGTATTCATCCGAGATCAAAATTAGAT
1 AACCATGATACTTGAAGCAATCTGTATTCATCCGAGATCAAAATTAGAT
738769 AAC
1 AAC
738772 TCTTGGATCC
Statistics
Matches: 50, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
49 50 1.00
ACGTcount: A:0.39, C:0.18, G:0.15, T:0.29
Consensus pattern (49 bp):
AACCATGATACTTGAAGCAATCTGTATTCATCCGAGATCAAAATTAGAT
Found at i:742262 original size:14 final size:14
Alignment explanation
Indices: 742214--742265 Score: 50
Period size: 14 Copynumber: 3.5 Consensus size: 14
742204 TATTAGGTAG
* *
742214 ATTTCAATTATTAA
1 ATTTTAATTATTTA
*
742228 ATTATTAATAAATTTA
1 ATT-TTAAT-TATTTA
742244 TATTTTAATTATTTA
1 -ATTTTAATTATTTA
742259 ATTTTAA
1 ATTTTAA
742266 AAAGTTATAA
Statistics
Matches: 31, Mismatches: 4, Indels: 6
0.76 0.10 0.15
Matches are distributed among these distances:
14 10 0.32
15 9 0.29
16 9 0.29
17 3 0.10
ACGTcount: A:0.42, C:0.02, G:0.00, T:0.56
Consensus pattern (14 bp):
ATTTTAATTATTTA
Found at i:749782 original size:75 final size:75
Alignment explanation
Indices: 749329--749771 Score: 769
Period size: 75 Copynumber: 5.9 Consensus size: 75
749319 GGTGTTGCGA
749329 TTTCCTTTTCCCCATGCAGCGCTTCTTCTTGTACTTGGTTTGTGGCAATTACCACATTTGCTTCC
1 TTTCCTTTTCCCCATGCAGCGCTTCTTCTTGTACTTGGTTTGTGGCAATTACCACATTTGCTTCC
749394 TCTTCAATGG
66 TCTTCAATGG
749404 TTTCCTTTTCCCCATGCAGCGCTTCTTCTTGTACTTGGTTTGTGGCAATTACCACATTTGCTTCC
1 TTTCCTTTTCCCCATGCAGCGCTTCTTCTTGTACTTGGTTTGTGGCAATTACCACATTTGCTTCC
749469 TCTTCAATGG
66 TCTTCAATGG
* * * *
749479 TTTCCTTTTCCCCATGCAGCGCTTCTTCTTGTTCTCGGTTTGTTGCAATGACCACATTTGCTTCC
1 TTTCCTTTTCCCCATGCAGCGCTTCTTCTTGTACTTGGTTTGTGGCAATTACCACATTTGCTTCC
*
749544 TTTTCAATGG
66 TCTTCAATGG
* * * *
749554 TTTCCTTTTCGCCATGCAGCGCTTCTTTTTGTTCTTGGTTTGTGGCAATTACCACAGTTGCTTCC
1 TTTCCTTTTCCCCATGCAGCGCTTCTTCTTGTACTTGGTTTGTGGCAATTACCACATTTGCTTCC
749619 TCTTCAATGG
66 TCTTCAATGG
*
749629 TTTCCTTTTCCCCATGCAGCGCTTCTTCTTGTTCTTGGTTTGTGGCAATTACCACATTTGCTTCC
1 TTTCCTTTTCCCCATGCAGCGCTTCTTCTTGTACTTGGTTTGTGGCAATTACCACATTTGCTTCC
749694 TCTTCAATGG
66 TCTTCAATGG
* * *
749704 TTTCCTTTACCCCATGCTGCGCTTCTTCTTGTACTTGGCTTGTGGCAATTACCACATTTGCTTCC
1 TTTCCTTTTCCCCATGCAGCGCTTCTTCTTGTACTTGGTTTGTGGCAATTACCACATTTGCTTCC
749769 TCT
66 TCT
749772 ACTATTGTTT
Statistics
Matches: 349, Mismatches: 19, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
75 349 1.00
ACGTcount: A:0.12, C:0.28, G:0.16, T:0.43
Consensus pattern (75 bp):
TTTCCTTTTCCCCATGCAGCGCTTCTTCTTGTACTTGGTTTGTGGCAATTACCACATTTGCTTCC
TCTTCAATGG
Found at i:759148 original size:10 final size:10
Alignment explanation
Indices: 759120--759158 Score: 51
Period size: 10 Copynumber: 3.8 Consensus size: 10
759110 GGCCTCTCTT
*
759120 TTCTCTTTCTC
1 TTCTC-TTCCC
759131 TTCTCTTCCC
1 TTCTCTTCCC
*
759141 TTCCCTTCCC
1 TTCTCTTCCC
759151 TTCTCTTC
1 TTCTCTTC
759159 ATTATTTTGT
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
10 20 0.80
11 5 0.20
ACGTcount: A:0.00, C:0.46, G:0.00, T:0.54
Consensus pattern (10 bp):
TTCTCTTCCC
Found at i:775448 original size:78 final size:78
Alignment explanation
Indices: 775315--775466 Score: 214
Period size: 78 Copynumber: 1.9 Consensus size: 78
775305 GAGTCACATC
* * * * *
775315 TCATGTAACTGTAGTGAATCAAGATTATCTTTTCAAGTCAAATCCTATCCACCTTAGGTTACCAT
1 TCATGTAACTGTAGCGAATCAAGATTACCGTTTCAAGTCAAATCCGATCCACCTTAAGTTACCAT
775380 AATGAATCATATA
66 AATGAATCATATA
* * * *
775393 TCATGTAACTGTAGCGAATCAGGATTACCGTTTCAGGTCAAATCCGATCCGCCTTAAGTTTCCAT
1 TCATGTAACTGTAGCGAATCAAGATTACCGTTTCAAGTCAAATCCGATCCACCTTAAGTTACCAT
*
775458 AGTGAATCA
66 AATGAATCA
775467 GGAACAAATC
Statistics
Matches: 64, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
78 64 1.00
ACGTcount: A:0.32, C:0.21, G:0.15, T:0.32
Consensus pattern (78 bp):
TCATGTAACTGTAGCGAATCAAGATTACCGTTTCAAGTCAAATCCGATCCACCTTAAGTTACCAT
AATGAATCATATA
Found at i:783847 original size:10 final size:11
Alignment explanation
Indices: 783826--783866 Score: 52
Period size: 10 Copynumber: 3.9 Consensus size: 11
783816 GCAAACTATA
783826 TTAATATATTT
1 TTAATATATTT
783837 TTAAT-TATTT
1 TTAATATATTT
783847 TTAA-AT-TTT
1 TTAATATATTT
783856 TTATATATATT
1 TTA-ATATATT
783867 ACTGCAATGT
Statistics
Matches: 26, Mismatches: 0, Indels: 7
0.79 0.00 0.21
Matches are distributed among these distances:
9 6 0.23
10 11 0.42
11 7 0.27
12 2 0.08
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (11 bp):
TTAATATATTT
Found at i:792447 original size:12 final size:12
Alignment explanation
Indices: 792430--792460 Score: 62
Period size: 12 Copynumber: 2.6 Consensus size: 12
792420 TGACAATGTT
792430 AAATGAAACTAG
1 AAATGAAACTAG
792442 AAATGAAACTAG
1 AAATGAAACTAG
792454 AAATGAA
1 AAATGAA
792461 CGCCAAGAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.61, C:0.06, G:0.16, T:0.16
Consensus pattern (12 bp):
AAATGAAACTAG
Found at i:798637 original size:133 final size:133
Alignment explanation
Indices: 798399--798660 Score: 506
Period size: 133 Copynumber: 2.0 Consensus size: 133
798389 CAAAGCGTAA
798399 AGAAAGTTCTATATTATGACGAGAACCTTTAAAGAAACCTCAAAAGAATATAGAATCAAAAGCAA
1 AGAAAGTTCTATATTATGACGAGAACCTTTAAAGAAACCTCAAAAGAATATAGAATCAAAAGCAA
798464 AGAAGATGCAAAAACAGAAAATAGCAGAACCTTAGACAGCAGGATTTACTCCCTAACATAATCCC
66 AGAAGATGCAAAAACAGAAAATAGCAGAACCTTAGACAGCAGGATTTACTCCCTAACATAATCCC
798529 CGT
131 CGT
* *
798532 AGAAAGTTCTATATTATGACGAGAACTTTTAAAGAAACCTCAAAAGAATATAGAATCAAAAGCTA
1 AGAAAGTTCTATATTATGACGAGAACCTTTAAAGAAACCTCAAAAGAATATAGAATCAAAAGCAA
798597 AGAAGATGCAAAAACAGAAAATAGCAGAACCTTAGACAGCAGGATTTACTCCCTAACATAATCC
66 AGAAGATGCAAAAACAGAAAATAGCAGAACCTTAGACAGCAGGATTTACTCCCTAACATAATCC
798661 ACTACGGGTA
Statistics
Matches: 127, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
133 127 1.00
ACGTcount: A:0.47, C:0.18, G:0.15, T:0.20
Consensus pattern (133 bp):
AGAAAGTTCTATATTATGACGAGAACCTTTAAAGAAACCTCAAAAGAATATAGAATCAAAAGCAA
AGAAGATGCAAAAACAGAAAATAGCAGAACCTTAGACAGCAGGATTTACTCCCTAACATAATCCC
CGT
Found at i:801092 original size:31 final size:31
Alignment explanation
Indices: 801030--801098 Score: 95
Period size: 33 Copynumber: 2.2 Consensus size: 31
801020 AAATCTCAAA
*
801030 TTTATATATAAATTTTAATTTAATCTGTAATT
1 TTTATATAAAAATTTTAATTTAATC-GTAATT
*
801062 TTATATATAAAAATTTTAATTTGATC-TAATT
1 TT-TATATAAAAATTTTAATTTAATCGTAATT
801093 TTTATA
1 TTTATA
801099 AATTATTAAC
Statistics
Matches: 34, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
30 4 0.12
31 7 0.21
32 2 0.06
33 21 0.62
ACGTcount: A:0.39, C:0.03, G:0.03, T:0.55
Consensus pattern (31 bp):
TTTATATAAAAATTTTAATTTAATCGTAATT
Found at i:802143 original size:167 final size:167
Alignment explanation
Indices: 801807--802125 Score: 358
Period size: 167 Copynumber: 1.9 Consensus size: 167
801797 TTACAAATCT
** * * * * *
801807 CACATTGAAATACATTTGGATCATACTTTAACTTAGTTTAAATTAGACTCTACTAAGAAGCCAAT
1 CACATTGAAATACATTAAGATCATACTCTAACTTAGTCTAAATTACACTCTACTAAAAAGACAAT
* * * * * *
801872 CATGTTATTAGGACCTCACTGCAAACTGTCCTTTTCTTGTAAATAGCCTTCTTCCAATATCAAAA
66 CATGCTATTAGGACCTCACTCCAAACTATCCTTTTCCTGTAAATACCCTTCTTCCAAGATCAAAA
* **
801937 TGATAAGAATAAAGACATAAAACTAGTTTACGAACCC
131 TGACAAGAATAAAGACATAAAACTAGTAGACGAACCC
* * * *
801974 CACATTGAAATACATTCAAG-TCATACTCTATCTTGGTCTAAATTTCACTTTACTAAAAAGACAA
1 CACATTGAAATACATT-AAGATCATACTCTAACTTAGTCTAAATTACACTCTACTAAAAAGACAA
* * *
802038 TCATGCTA-TAGAGGCCTCTCTCCAAACTAT-CTTTTCCT-TAACTACCCTTCTTCCAAGATCAA
65 TCATGCTATTAG-GACCTCACTCCAAACTATCCTTTTCCTGTAAATACCCTTCTTCCAAGATCAA
* *
802100 AGTGGCAAGAATAAAGACATAGAAAC
129 AATGACAAGAATAAAGACATA-AAAC
802126 AGGTGAGACA
Statistics
Matches: 126, Mismatches: 23, Indels: 7
0.81 0.15 0.04
Matches are distributed among these distances:
165 39 0.31
166 14 0.11
167 72 0.57
168 1 0.01
ACGTcount: A:0.37, C:0.22, G:0.11, T:0.31
Consensus pattern (167 bp):
CACATTGAAATACATTAAGATCATACTCTAACTTAGTCTAAATTACACTCTACTAAAAAGACAAT
CATGCTATTAGGACCTCACTCCAAACTATCCTTTTCCTGTAAATACCCTTCTTCCAAGATCAAAA
TGACAAGAATAAAGACATAAAACTAGTAGACGAACCC
Found at i:804026 original size:15 final size:15
Alignment explanation
Indices: 804006--804049 Score: 88
Period size: 15 Copynumber: 2.9 Consensus size: 15
803996 CAGTGATAAA
804006 GAAATAAGCATAGTT
1 GAAATAAGCATAGTT
804021 GAAATAAGCATAGTT
1 GAAATAAGCATAGTT
804036 GAAATAAGCATAGT
1 GAAATAAGCATAGT
804050 AAGGGCATGA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 29 1.00
ACGTcount: A:0.48, C:0.07, G:0.20, T:0.25
Consensus pattern (15 bp):
GAAATAAGCATAGTT
Found at i:820775 original size:30 final size:30
Alignment explanation
Indices: 820739--820802 Score: 92
Period size: 30 Copynumber: 2.1 Consensus size: 30
820729 TAACAAAAAA
*
820739 CTCTCAAATTTCTCCCTAAATTTCTCAAAG
1 CTCTCAAATTTCTCACTAAATTTCTCAAAG
* * *
820769 CTCTCAAATTTCTCATTAATTTTCTCATAG
1 CTCTCAAATTTCTCACTAAATTTCTCAAAG
820799 CTCT
1 CTCT
820803 ATTTAATTAA
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.27, C:0.28, G:0.03, T:0.42
Consensus pattern (30 bp):
CTCTCAAATTTCTCACTAAATTTCTCAAAG
Found at i:824962 original size:126 final size:126
Alignment explanation
Indices: 824737--825147 Score: 590
Period size: 126 Copynumber: 3.3 Consensus size: 126
824727 GGCTGAACAT
* * *
824737 GAACTACTATAGAGAAAGAGCATCTATC-TGGGAGCTTTTTTCATCAATTTTGCTGACAGTGCAT
1 GAACTACTATAGAAAAAGAGCGTCCA-CGTGGGAGCTTTTTTCATCAATTTTGCTGACAGTGCAT
* * * ** * *
824801 CCTGCTTGAAGCATTTTTGACACTATTTGTTCAGAATATTCTTCTTAAAATTATTTGTTCAG
65 CCTACTTAAAGCGTTTTTGACACTATTTGTTCAGAATCGTCTTCTCAAAATTATTTTTTCAG
* * *
824863 GAACTACTTTAGAAAAAGAGCGTCTACGTGGGAGCTTTTTTCATCAATTTTGCTGACAATGCATC
1 GAACTACTATAGAAAAAGAGCGTCCACGTGGGAGCTTTTTTCATCAATTTTGCTGACAGTGCATC
*
824928 CTACTTAAAGCGTTTTTGACACTAGTTGTTCAGAATCGTCTTCTCAAAATTATTTTTTCAG
66 CTACTTAAAGCGTTTTTGACACTATTTGTTCAGAATCGTCTTCTCAAAATTATTTTTTCAG
* * * * *
824989 AAACTACTATAGAGAAAGAGCGTCCACATGGGAGCTCTTTTCATCAATTTTGCTGATAGTGCATC
1 GAACTACTATAGAAAAAGAGCGTCCACGTGGGAGCTTTTTTCATCAATTTTGCTGACAGTGCATC
* * * *
825054 CTATTTAAAGCGTTTTTGACACTATTTGTTTAGAACCGTCTTCTCAATATTATTTTTTCAG
66 CTACTTAAAGCGTTTTTGACACTATTTGTTCAGAATCGTCTTCTCAAAATTATTTTTTCAG
*
825115 GAACTATTATAGAAAAAGAGCGTCCACGTGGGA
1 GAACTACTATAGAAAAAGAGCGTCCACGTGGGA
825148 ATTTTTTGTA
Statistics
Matches: 255, Mismatches: 29, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
125 1 0.00
126 254 1.00
ACGTcount: A:0.29, C:0.18, G:0.17, T:0.36
Consensus pattern (126 bp):
GAACTACTATAGAAAAAGAGCGTCCACGTGGGAGCTTTTTTCATCAATTTTGCTGACAGTGCATC
CTACTTAAAGCGTTTTTGACACTATTTGTTCAGAATCGTCTTCTCAAAATTATTTTTTCAG
Found at i:827104 original size:28 final size:28
Alignment explanation
Indices: 827067--827173 Score: 160
Period size: 28 Copynumber: 3.8 Consensus size: 28
827057 GCAATCAAAT
*
827067 ATGGTACTTAGTGTACGAAATATTGAGA
1 ATGGCACTTAGTGTACGAAATATTGAGA
827095 ATGGCACTTAGTGTACGAAATATTGAGA
1 ATGGCACTTAGTGTACGAAATATTGAGA
* *
827123 ATGGCACTTAGTGTGCGAGATATTGAGA
1 ATGGCACTTAGTGTACGAAATATTGAGA
* * *
827151 ATGACACTTAGTGTGCAAAATAT
1 ATGGCACTTAGTGTACGAAATAT
827174 CGAATGATTC
Statistics
Matches: 73, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
28 73 1.00
ACGTcount: A:0.35, C:0.10, G:0.25, T:0.30
Consensus pattern (28 bp):
ATGGCACTTAGTGTACGAAATATTGAGA
Found at i:834730 original size:39 final size:39
Alignment explanation
Indices: 834684--834862 Score: 259
Period size: 39 Copynumber: 4.6 Consensus size: 39
834674 GCTCTGATGA
*
834684 GCTTCAGTTAGCCTCCGGGCTTCCGTTTAGCACTTATGT
1 GCTTCAGTTAGCCTTCGGGCTTCCGTTTAGCACTTATGT
*
834723 GCTTCAGTTAGCCTTCGGGTTTCCGTTTAGCACTTATGT
1 GCTTCAGTTAGCCTTCGGGCTTCCGTTTAGCACTTATGT
* * * **
834762 ACTTCAGTTAGCCTCCGGGCTTCCATTTAGCTGTTATGT
1 GCTTCAGTTAGCCTTCGGGCTTCCGTTTAGCACTTATGT
*
834801 GCTTCAGTTAGCCTTCGGGCTTCCGTTTAACACTTATGT
1 GCTTCAGTTAGCCTTCGGGCTTCCGTTTAGCACTTATGT
* * *
834840 GCTTTAGCTAGACTTCGGGCTTC
1 GCTTCAGTTAGCCTTCGGGCTTC
834863 AGATCACGAT
Statistics
Matches: 123, Mismatches: 17, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
39 123 1.00
ACGTcount: A:0.14, C:0.26, G:0.22, T:0.38
Consensus pattern (39 bp):
GCTTCAGTTAGCCTTCGGGCTTCCGTTTAGCACTTATGT
Found at i:835336 original size:271 final size:271
Alignment explanation
Indices: 834846--835387 Score: 1021
Period size: 271 Copynumber: 2.0 Consensus size: 271
834836 ATGTGCTTTA
834846 GCTAGACTTCGGGCTTCAGATCACGATGTACTCAAATCCGTAAGCCATTCCTTGAATCGACAAGT
1 GCTAGACTTCGGGCTTCAGATCACGATGTACTCAAATCCGTAAGCCATTCCTTGAATCGACAAGT
*
834911 TGGTAAGTCGTAAATGTAACGTGCGGAAAAAGAAATGTAAGTAATGTTATCGTTATTATTATTGA
66 TGGTAAGTCGTAAATGTAACATGCGGAAAAAGAAATGTAAGTAATGTTATCGTTATTATTATTGA
834976 GCTCAATTATGTGATTTTGTCATTCAGAGATTATGTTTGACAGGATATGTTAGTAAATTATGAGT
131 GCTCAATTATGTGATTTTGTCATTCAGAGATTATGTTTGACAGGATATGTTAGTAAATTATGAGT
835041 ATGTGAATCAAAGTGACAGAATTTAAACACCTAATGAGGTTGAGCTCATTCACATGAATTTGTTA
196 ATGTGAATCAAAGTGACAGAATTTAAACACCTAATGAGGTTGAGCTCATTCACATGAATTTGTTA
835106 TTTGAAAATTG
261 TTTGAAAATTG
* ** * *
835117 GCTAGATTTCGGGCTTCAGATCACGATGTACTCAAATCCGTAAGCTGTTCCTTGGATGGACAAGT
1 GCTAGACTTCGGGCTTCAGATCACGATGTACTCAAATCCGTAAGCCATTCCTTGAATCGACAAGT
*
835182 TGGTAAGTCGTAAATGTAACATGTGGAAAAAGAAATGTAAGTAATGTTATCGTTATTATTATTGA
66 TGGTAAGTCGTAAATGTAACATGCGGAAAAAGAAATGTAAGTAATGTTATCGTTATTATTATTGA
835247 GCTCAATTATGTGATTTTGTCATTCAGAGATTATGTTTGACAGGATATGTTAGTAAATTATGAGT
131 GCTCAATTATGTGATTTTGTCATTCAGAGATTATGTTTGACAGGATATGTTAGTAAATTATGAGT
835312 ATGTGAATCAAAGTGACAGAATTTAAACACCTAATGAGGTTGAGCTCATTCACATGAATTTGTTA
196 ATGTGAATCAAAGTGACAGAATTTAAACACCTAATGAGGTTGAGCTCATTCACATGAATTTGTTA
835377 TTTGAAAATTG
261 TTTGAAAATTG
835388 TGATTAACAG
Statistics
Matches: 264, Mismatches: 7, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
271 264 1.00
ACGTcount: A:0.33, C:0.12, G:0.21, T:0.34
Consensus pattern (271 bp):
GCTAGACTTCGGGCTTCAGATCACGATGTACTCAAATCCGTAAGCCATTCCTTGAATCGACAAGT
TGGTAAGTCGTAAATGTAACATGCGGAAAAAGAAATGTAAGTAATGTTATCGTTATTATTATTGA
GCTCAATTATGTGATTTTGTCATTCAGAGATTATGTTTGACAGGATATGTTAGTAAATTATGAGT
ATGTGAATCAAAGTGACAGAATTTAAACACCTAATGAGGTTGAGCTCATTCACATGAATTTGTTA
TTTGAAAATTG
Done.