Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold11351.1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2885
ACGTcount: A:0.29, C:0.25, G:0.19, T:0.27


Found at i:1316 original size:49 final size:49

Alignment explanation


    Indices: 1260--1356  Score: 158
    Period size: 49  Copynumber: 2.0  Consensus size: 49

       1250 GGTGTGGCTA

                            *                      *         
       1260 TCATCGAGAAACCTTTTACAAATCATCGGTAATAACCAGTGAGCCCCAG
          1 TCATCGAGAAACCTTTGACAAATCATCGGTAATAACCAGCGAGCCCCAG

                                    *            *          
       1309 TCATCGAGAAACCTTTGACAAATCGTCGGTAATAACCGGCGAGCCCCA
          1 TCATCGAGAAACCTTTGACAAATCATCGGTAATAACCAGCGAGCCCCA

       1357 AGAAGCTCCG


Statistics
Matches: 44,  Mismatches: 4, Indels: 0
        0.92            0.08        0.00

Matches are distributed among these distances:
  49   44  1.00

ACGTcount: A:0.33, C:0.28, G:0.19, T:0.21


Consensus pattern (49 bp):   
TCATCGAGAAACCTTTGACAAATCATCGGTAATAACCAGCGAGCCCCAG
Done.