Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr9
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 91122320
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2661692 characters in sequence are not A, C, G, or T
File 103 of 279
Found at i:32835937 original size:42 final size:43
Alignment explanation
Indices: 32835828--32835938 Score: 129
Period size: 43 Copynumber: 2.6 Consensus size: 43
32835818 ATCAAGTACA
* *
32835828 ATACCGACGTCCCAGACGTGGTCTTACATGAAATTCAATATCG
1 ATACCGATGTCCCAGACATGGTCTTACATGAAATTCAATATCG
** *
32835871 ATACCTCTGTCCCAGACAGGGTCTTACATGAAA-TCAGATA-CG
1 ATACCGATGTCCCAGACATGGTCTTACATGAAATTCA-ATATCG
*
32835913 ATGCCGATGTCCCATG-CATGGTCTTA
1 ATACCGATGTCCCA-GACATGGTCTTA
32835939 TACATAAATC
Statistics
Matches: 57, Mismatches: 9, Indels: 5
0.80 0.13 0.07
Matches are distributed among these distances:
42 25 0.44
43 32 0.56
ACGTcount: A:0.28, C:0.26, G:0.20, T:0.26
Consensus pattern (43 bp):
ATACCGATGTCCCAGACATGGTCTTACATGAAATTCAATATCG
Found at i:32841267 original size:3 final size:3
Alignment explanation
Indices: 32841259--32841301 Score: 68
Period size: 3 Copynumber: 14.3 Consensus size: 3
32841249 AGTTACTATC
* *
32841259 ATA ATA ATA ATA ATA ATA ATA ACA ATA ATA ACA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
32841302 GGGTGAAAAA
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
3 36 1.00
ACGTcount: A:0.67, C:0.05, G:0.00, T:0.28
Consensus pattern (3 bp):
ATA
Found at i:32841549 original size:60 final size:60
Alignment explanation
Indices: 32841474--32841596 Score: 194
Period size: 60 Copynumber: 2.0 Consensus size: 60
32841464 ATAAAAAAGT
* *
32841474 AAATAAAGGACTAAAATATAACATGTGAAAAATAACAGGGGCTAAAT-GGAGAATATTCCC
1 AAATAAAGGACTAAAATATAACATGTGAAAAATAACAGGGGATAAATGGGAAAATA-TCCC
* *
32841534 AAATAAAGTACTAAAATATAATATGTGAAAAATAACAGGGGATAAATGGGAAAATATCCC
1 AAATAAAGGACTAAAATATAACATGTGAAAAATAACAGGGGATAAATGGGAAAATATCCC
32841594 AAA
1 AAA
32841597 ACCTAGGACA
Statistics
Matches: 58, Mismatches: 4, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
60 51 0.88
61 7 0.12
ACGTcount: A:0.53, C:0.10, G:0.17, T:0.20
Consensus pattern (60 bp):
AAATAAAGGACTAAAATATAACATGTGAAAAATAACAGGGGATAAATGGGAAAATATCCC
Found at i:32843766 original size:34 final size:34
Alignment explanation
Indices: 32843723--32843853 Score: 217
Period size: 34 Copynumber: 3.9 Consensus size: 34
32843713 GCATGACTGC
*
32843723 TACTGATACTGTGATGGGCTAAGGCCCTAATGCG
1 TACTGATACTGTGATGGGCTAAGACCCTAATGCG
*
32843757 TACTGATACTGTGGTGGGCTAAGACCCTAATGCG
1 TACTGATACTGTGATGGGCTAAGACCCTAATGCG
*
32843791 TACTAATACTGTGATGGGCTAAGACCCTAATGCG
1 TACTGATACTGTGATGGGCTAAGACCCTAATGCG
* *
32843825 TACTGATACTATGATGGGCTAAGGCCCTA
1 TACTGATACTGTGATGGGCTAAGACCCTA
32843854 CTGCATATTT
Statistics
Matches: 90, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
34 90 1.00
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.27
Consensus pattern (34 bp):
TACTGATACTGTGATGGGCTAAGACCCTAATGCG
Found at i:32844256 original size:19 final size:19
Alignment explanation
Indices: 32844232--32844270 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
32844222 CAAACTCAAC
32844232 AAACAAA-CGGTTTTCTCTA
1 AAACAAAGCGGTTTT-TCTA
*
32844251 AAACAAAGGGGTTTTTCTA
1 AAACAAAGCGGTTTTTCTA
32844270 A
1 A
32844271 GATGGATGAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 12 0.67
20 6 0.33
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (19 bp):
AAACAAAGCGGTTTTTCTA
Found at i:32844853 original size:24 final size:23
Alignment explanation
Indices: 32844826--32844883 Score: 57
Period size: 24 Copynumber: 2.5 Consensus size: 23
32844816 TTATCCTTTT
*
32844826 TTTTTGTCTTTTCTATTATTTTGC-
1 TTTTTGTCTTTGCTA-T-TTTTGCA
32844850 -TTTTGTTCTTTGCTATTTTTGCA
1 TTTTTG-TCTTTGCTATTTTTGCA
*
32844873 TTTTTTTCTTT
1 TTTTTGTCTTT
32844884 ATAGGTAGTG
Statistics
Matches: 29, Mismatches: 2, Indels: 7
0.76 0.05 0.18
Matches are distributed among these distances:
22 6 0.21
23 11 0.38
24 12 0.41
ACGTcount: A:0.07, C:0.12, G:0.09, T:0.72
Consensus pattern (23 bp):
TTTTTGTCTTTGCTATTTTTGCA
Found at i:32844876 original size:23 final size:24
Alignment explanation
Indices: 32844827--32844883 Score: 66
Period size: 23 Copynumber: 2.5 Consensus size: 24
32844817 TATCCTTTTT
*
32844827 TTTTG-TCTTTTCTATTATTTTGC
1 TTTTGTTCTTTGCTATTATTTTGC
32844850 TTTTGTTCTTTGCTA-T-TTTTGC
1 TTTTGTTCTTTGCTATTATTTTGC
*
32844872 ATTTTTTTCTTT
1 -TTTTGTTCTTT
32844884 ATAGGTAGTG
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
22 6 0.20
23 16 0.53
24 8 0.27
ACGTcount: A:0.07, C:0.12, G:0.09, T:0.72
Consensus pattern (24 bp):
TTTTGTTCTTTGCTATTATTTTGC
Found at i:32845183 original size:13 final size:13
Alignment explanation
Indices: 32845157--32845202 Score: 51
Period size: 13 Copynumber: 3.7 Consensus size: 13
32845147 GGACTTGGGT
* *
32845157 TTTATTATTATTA
1 TTTATTTTTTTTA
32845170 TTTATTTTTTTTA
1 TTTATTTTTTTTA
*
32845183 --TATTTTGTTTA
1 TTTATTTTTTTTA
32845194 TTTATTTTT
1 TTTATTTTT
32845203 GGTTTTGGGC
Statistics
Matches: 27, Mismatches: 4, Indels: 4
0.77 0.11 0.11
Matches are distributed among these distances:
11 10 0.37
13 17 0.63
ACGTcount: A:0.20, C:0.00, G:0.02, T:0.78
Consensus pattern (13 bp):
TTTATTTTTTTTA
Found at i:32845513 original size:51 final size:53
Alignment explanation
Indices: 32845381--32845517 Score: 135
Period size: 51 Copynumber: 2.7 Consensus size: 53
32845371 ATGTGTCGTA
* *
32845381 ATTATTTTTTTTCTAATTAATTTAAAT--TAAATAAGAGATAAGTATTAAAATT
1 ATTATTTTATCTCTAATTAA-TTAAATAATAAATAAGAGATAAGTATTAAAATT
* * * * *
32845433 A-TATATTAACACTAATTAA--AAATAAAATAATTAAGTGATAA-TATT-AAATT
1 ATTATTTTATCTCTAATTAATTAAAT--AATAAATAAGAGATAAGTATTAAAATT
32845483 ATTATTTTATCTCTAATTAATTAAATAATAAATAA
1 ATTATTTTATCTCTAATTAATTAAATAATAAATAA
32845518 AATAGTTTGA
Statistics
Matches: 67, Mismatches: 11, Indels: 15
0.72 0.12 0.16
Matches are distributed among these distances:
48 4 0.06
50 6 0.09
51 40 0.60
52 13 0.19
53 4 0.06
ACGTcount: A:0.50, C:0.04, G:0.04, T:0.43
Consensus pattern (53 bp):
ATTATTTTATCTCTAATTAATTAAATAATAAATAAGAGATAAGTATTAAAATT
Found at i:32847156 original size:24 final size:23
Alignment explanation
Indices: 32847128--32847179 Score: 61
Period size: 23 Copynumber: 2.3 Consensus size: 23
32847118 CGTAGGGCAA
* *
32847128 TTTTTCAACTTTATTGGT-AGAGT
1 TTTTTTAACCTTATTGGTGA-AGT
*
32847151 TTTTTTTACCTTATTGGTGAAGT
1 TTTTTTAACCTTATTGGTGAAGT
32847174 TTTTTT
1 TTTTTT
32847180 TTAAATTTTG
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
23 24 0.96
24 1 0.04
ACGTcount: A:0.17, C:0.08, G:0.15, T:0.60
Consensus pattern (23 bp):
TTTTTTAACCTTATTGGTGAAGT
Found at i:32847236 original size:15 final size:16
Alignment explanation
Indices: 32847208--32847241 Score: 52
Period size: 15 Copynumber: 2.1 Consensus size: 16
32847198 AATAATTTTT
32847208 TATATTATGATATATAA
1 TATATTAT-ATATATAA
32847225 TATATTAT-TATATAA
1 TATATTATATATATAA
32847240 TA
1 TA
32847242 AGATATAAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 9 0.53
17 8 0.47
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (16 bp):
TATATTATATATATAA
Found at i:32847877 original size:18 final size:17
Alignment explanation
Indices: 32847854--32847889 Score: 54
Period size: 18 Copynumber: 2.1 Consensus size: 17
32847844 CGTAATTTGA
32847854 TTGTTTTAATAAAATATT
1 TTGTTTTAATAAAA-ATT
*
32847872 TTGTTTTACTAAAAATT
1 TTGTTTTAATAAAAATT
32847889 T
1 T
32847890 GACATTGGTC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 4 0.24
18 13 0.76
ACGTcount: A:0.36, C:0.03, G:0.06, T:0.56
Consensus pattern (17 bp):
TTGTTTTAATAAAAATT
Found at i:32848735 original size:12 final size:12
Alignment explanation
Indices: 32848718--32848743 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
32848708 AAAATAGGGC
32848718 TTTAGCGGCGTT
1 TTTAGCGGCGTT
32848730 TTTAGCGGCGTT
1 TTTAGCGGCGTT
32848742 TT
1 TT
32848744 ATGAAAAACG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.08, C:0.15, G:0.31, T:0.46
Consensus pattern (12 bp):
TTTAGCGGCGTT
Found at i:32848824 original size:41 final size:41
Alignment explanation
Indices: 32848779--32848883 Score: 140
Period size: 41 Copynumber: 2.6 Consensus size: 41
32848769 ATTAGCGGCG
* *
32848779 TTTTTGGAAAAGCGCCGCTAAAAAACAGAGCAATAGCAGCA
1 TTTTTGTAAAAGCGCCGCTAAAAAACAGAACAATAGCAGCA
* ** *
32848820 TTTTTGTCAAAGCGCCGCTAAAAAACAGAACAATAGTGGCG
1 TTTTTGTAAAAGCGCCGCTAAAAAACAGAACAATAGCAGCA
32848861 TTTTTAGTAAAA-CGCCGCTAAAA
1 TTTTT-GTAAAAGCGCCGCTAAAA
32848884 GTCATATAAC
Statistics
Matches: 56, Mismatches: 7, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
41 51 0.91
42 5 0.09
ACGTcount: A:0.39, C:0.19, G:0.20, T:0.22
Consensus pattern (41 bp):
TTTTTGTAAAAGCGCCGCTAAAAAACAGAACAATAGCAGCA
Found at i:32849657 original size:19 final size:20
Alignment explanation
Indices: 32849628--32849665 Score: 69
Period size: 19 Copynumber: 1.9 Consensus size: 20
32849618 TAAAAAATAT
32849628 ATTGATAAATAAATAAAAAC
1 ATTGATAAATAAATAAAAAC
32849648 ATTGAT-AATAAATAAAAA
1 ATTGATAAATAAATAAAAA
32849666 TGAAATATAA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 12 0.67
20 6 0.33
ACGTcount: A:0.66, C:0.03, G:0.05, T:0.26
Consensus pattern (20 bp):
ATTGATAAATAAATAAAAAC
Found at i:32850535 original size:7 final size:7
Alignment explanation
Indices: 32850523--32850575 Score: 106
Period size: 7 Copynumber: 7.6 Consensus size: 7
32850513 AGTCTTTAAA
32850523 AAAATTG
1 AAAATTG
32850530 AAAATTG
1 AAAATTG
32850537 AAAATTG
1 AAAATTG
32850544 AAAATTG
1 AAAATTG
32850551 AAAATTG
1 AAAATTG
32850558 AAAATTG
1 AAAATTG
32850565 AAAATTG
1 AAAATTG
32850572 AAAA
1 AAAA
32850576 ATAAAAAATT
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 46 1.00
ACGTcount: A:0.60, C:0.00, G:0.13, T:0.26
Consensus pattern (7 bp):
AAAATTG
Found at i:32850582 original size:7 final size:7
Alignment explanation
Indices: 32850522--32850620 Score: 99
Period size: 7 Copynumber: 13.6 Consensus size: 7
32850512 AAGTCTTTAA
32850522 AAAAATT
1 AAAAATT
*
32850529 GAAAATT
1 AAAAATT
*
32850536 GAAAATT
1 AAAAATT
*
32850543 GAAAATT
1 AAAAATT
*
32850550 GAAAATT
1 AAAAATT
*
32850557 GAAAATT
1 AAAAATT
*
32850564 GAAAATT
1 AAAAATT
*
32850571 GAAAAATA
1 -AAAAATT
32850579 AAAAATT
1 AAAAATT
32850586 AAAAATT
1 AAAAATT
32850593 AAAAACTT
1 AAAAA-TT
32850601 AAAAACTT
1 AAAAA-TT
32850609 AAAAACTT
1 AAAAA-TT
32850617 AAAA
1 AAAA
32850621 TTTTAATATT
Statistics
Matches: 86, Mismatches: 4, Indels: 3
0.92 0.04 0.03
Matches are distributed among these distances:
7 59 0.69
8 27 0.31
ACGTcount: A:0.65, C:0.03, G:0.07, T:0.25
Consensus pattern (7 bp):
AAAAATT
Found at i:32850597 original size:8 final size:8
Alignment explanation
Indices: 32850565--32850620 Score: 62
Period size: 8 Copynumber: 7.2 Consensus size: 8
32850555 TTGAAAATTG
*
32850565 AAAATTGA
1 AAAATTAA
32850573 AAAA-TAA
1 AAAATTAA
32850580 AAAATT-A
1 AAAATTAA
32850587 AAAATTAA
1 AAAATTAA
*
32850595 AAACTTAA
1 AAAATTAA
*
32850603 AAACTTAA
1 AAAATTAA
*
32850611 AAACTTAA
1 AAAATTAA
32850619 AA
1 AA
32850621 TTTTAATATT
Statistics
Matches: 44, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
7 13 0.30
8 31 0.70
ACGTcount: A:0.70, C:0.05, G:0.02, T:0.23
Consensus pattern (8 bp):
AAAATTAA
Found at i:32854635 original size:22 final size:22
Alignment explanation
Indices: 32854610--32854654 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 22
32854600 CAGGTTAGTG
32854610 TAGGAATATTCTGTAAATATTT
1 TAGGAATATTCTGTAAATATTT
* *
32854632 TAGGAATATTTTGTAGATATTT
1 TAGGAATATTCTGTAAATATTT
32854654 T
1 T
32854655 CTTTATTAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.33, C:0.02, G:0.16, T:0.49
Consensus pattern (22 bp):
TAGGAATATTCTGTAAATATTT
Found at i:32858414 original size:22 final size:22
Alignment explanation
Indices: 32858386--32858430 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 22
32858376 AGGGGGAGTG
32858386 TAGGAATATTCTGTAAATATTT
1 TAGGAATATTCTGTAAATATTT
* *
32858408 TAGGAATATTTTGTAGATATTT
1 TAGGAATATTCTGTAAATATTT
32858430 T
1 T
32858431 CTTTATTAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.33, C:0.02, G:0.16, T:0.49
Consensus pattern (22 bp):
TAGGAATATTCTGTAAATATTT
Found at i:32859536 original size:20 final size:20
Alignment explanation
Indices: 32859506--32859557 Score: 61
Period size: 20 Copynumber: 2.6 Consensus size: 20
32859496 ACTGGAATTT
*
32859506 ATGTT-AATTTAAGAGAGGA
1 ATGTTGAATTTAAGAGACGA
* *
32859525 ATGTTGAATTTATGAGTCGA
1 ATGTTGAATTTAAGAGACGA
32859545 ATTGTTGAATTTA
1 A-TGTTGAATTTA
32859558 GAAGTAAAAA
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
19 5 0.18
20 12 0.43
21 11 0.39
ACGTcount: A:0.35, C:0.02, G:0.23, T:0.40
Consensus pattern (20 bp):
ATGTTGAATTTAAGAGACGA
Found at i:32860402 original size:25 final size:23
Alignment explanation
Indices: 32860364--32860414 Score: 59
Period size: 23 Copynumber: 2.1 Consensus size: 23
32860354 ATTTTTATTA
*
32860364 TTTATTTTAGTTTTGATTATAAATT
1 TTTATTTTAGTTTT-AATA-AAATT
32860389 TTTATTTTTA-TTTTAATAAAATT
1 TTTA-TTTTAGTTTTAATAAAATT
32860412 TTT
1 TTT
32860415 TTATATTTAT
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
23 8 0.33
24 3 0.12
25 8 0.33
26 5 0.21
ACGTcount: A:0.29, C:0.00, G:0.04, T:0.67
Consensus pattern (23 bp):
TTTATTTTAGTTTTAATAAAATT
Found at i:32860413 original size:22 final size:21
Alignment explanation
Indices: 32860382--32860422 Score: 55
Period size: 22 Copynumber: 1.9 Consensus size: 21
32860372 AGTTTTGATT
* *
32860382 ATAAATTTTTATTTTTATTTTA
1 ATAAAATTTT-TTTATATTTTA
32860404 ATAAAATTTTTTTATATTT
1 ATAAAATTTTTTTATATTT
32860423 ATATCATGGA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 8 0.47
22 9 0.53
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (21 bp):
ATAAAATTTTTTTATATTTTA
Found at i:32860844 original size:47 final size:48
Alignment explanation
Indices: 32860787--32860882 Score: 124
Period size: 48 Copynumber: 2.0 Consensus size: 48
32860777 AAATAAAGTG
* * *
32860787 AATAGTATAATACAATC-TAAAATAATTAATACATA-AAGTAATTTAAA
1 AATAGAATAATACAATCTTAAAATAAATAATACATATAA-CAATTTAAA
* *
32860834 AATAGAATAATGCAATCTTAAAATAAATAATATATATAACAATTTAAA
1 AATAGAATAATACAATCTTAAAATAAATAATACATATAACAATTTAAA
32860882 A
1 A
32860883 GAACACATAG
Statistics
Matches: 42, Mismatches: 5, Indels: 3
0.84 0.10 0.06
Matches are distributed among these distances:
47 15 0.36
48 25 0.60
49 2 0.05
ACGTcount: A:0.58, C:0.06, G:0.04, T:0.31
Consensus pattern (48 bp):
AATAGAATAATACAATCTTAAAATAAATAATACATATAACAATTTAAA
Found at i:32863829 original size:40 final size:40
Alignment explanation
Indices: 32863784--32863864 Score: 153
Period size: 40 Copynumber: 2.0 Consensus size: 40
32863774 CAATCTTCAA
*
32863784 TTGTGTCCCAACTTGAAGAATTACCGAAATTCAATCATTT
1 TTGTGTCCCAACTTGAAGAATTACCGAAAATCAATCATTT
32863824 TTGTGTCCCAACTTGAAGAATTACCGAAAATCAATCATTT
1 TTGTGTCCCAACTTGAAGAATTACCGAAAATCAATCATTT
32863864 T
1 T
32863865 ATAAATAATA
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
40 40 1.00
ACGTcount: A:0.33, C:0.20, G:0.12, T:0.35
Consensus pattern (40 bp):
TTGTGTCCCAACTTGAAGAATTACCGAAAATCAATCATTT
Found at i:32879904 original size:92 final size:92
Alignment explanation
Indices: 32879779--32879963 Score: 352
Period size: 92 Copynumber: 2.0 Consensus size: 92
32879769 AATAACATTA
*
32879779 AAATATGTAGGGGCAAGTCACGGCAATCTAATACTTTCATGCTAGATTCTTATACATTCGAATAA
1 AAATATGTAGGGGCAAGTCACGACAATCTAATACTTTCATGCTAGATTCTTATACATTCGAATAA
32879844 TAAATTATGCTATGCATTTCTAAACTT
66 TAAATTATGCTATGCATTTCTAAACTT
*
32879871 AAATATGTAGGGGCAGGTCACGACAATCTAATACTTTCATGCTAGATTCTTATACATTCGAATAA
1 AAATATGTAGGGGCAAGTCACGACAATCTAATACTTTCATGCTAGATTCTTATACATTCGAATAA
32879936 TAAATTATGCTATGCATTTCTAAACTT
66 TAAATTATGCTATGCATTTCTAAACTT
32879963 A
1 A
32879964 GTCTTCCACT
Statistics
Matches: 91, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
92 91 1.00
ACGTcount: A:0.35, C:0.16, G:0.14, T:0.35
Consensus pattern (92 bp):
AAATATGTAGGGGCAAGTCACGACAATCTAATACTTTCATGCTAGATTCTTATACATTCGAATAA
TAAATTATGCTATGCATTTCTAAACTT
Found at i:32882845 original size:61 final size:61
Alignment explanation
Indices: 32882750--32882875 Score: 243
Period size: 61 Copynumber: 2.1 Consensus size: 61
32882740 GGTAAGAAGA
*
32882750 TATATGAGTCTAGTTTCAGGTAAAATTAACGGATATTAATTTGGAGTTCCGTATCTTGAGT
1 TATATGAGTCTAGTTTCAGGTAAAATTAACGGATATTAATTTGAAGTTCCGTATCTTGAGT
32882811 TATATGAGTCTAGTTTCAGGTAAAATTAACGGATATTAATTTGAAGTTCCGTATCTTGAGT
1 TATATGAGTCTAGTTTCAGGTAAAATTAACGGATATTAATTTGAAGTTCCGTATCTTGAGT
32882872 TATA
1 TATA
32882876 AATAATTTAG
Statistics
Matches: 64, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
61 64 1.00
ACGTcount: A:0.31, C:0.10, G:0.20, T:0.40
Consensus pattern (61 bp):
TATATGAGTCTAGTTTCAGGTAAAATTAACGGATATTAATTTGAAGTTCCGTATCTTGAGT
Found at i:32883654 original size:24 final size:24
Alignment explanation
Indices: 32883627--32883685 Score: 118
Period size: 24 Copynumber: 2.5 Consensus size: 24
32883617 AGGAAATGGA
32883627 AATCATGGTATTGATGAGCTCATC
1 AATCATGGTATTGATGAGCTCATC
32883651 AATCATGGTATTGATGAGCTCATC
1 AATCATGGTATTGATGAGCTCATC
32883675 AATCATGGTAT
1 AATCATGGTAT
32883686 ATATTATTGG
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 35 1.00
ACGTcount: A:0.31, C:0.15, G:0.20, T:0.34
Consensus pattern (24 bp):
AATCATGGTATTGATGAGCTCATC
Found at i:32884090 original size:23 final size:23
Alignment explanation
Indices: 32884064--32884108 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
32884054 TAGGTATGTG
*
32884064 ATGACGTTATCTT-ATAAATATGC
1 ATGAAGTTATCTTGA-AAATATGC
*
32884087 ATGAATTTATCTTGAAAATATG
1 ATGAAGTTATCTTGAAAATATG
32884109 TTGAATTGGT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 18 0.95
24 1 0.05
ACGTcount: A:0.38, C:0.09, G:0.13, T:0.40
Consensus pattern (23 bp):
ATGAAGTTATCTTGAAAATATGC
Found at i:32884949 original size:15 final size:15
Alignment explanation
Indices: 32884922--32884950 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
32884912 GTTCAGAAAG
32884922 AAATATATCAGTCAA
1 AAATATATCAGTCAA
32884937 AAATATATCAGTCA
1 AAATATATCAGTCA
32884951 GAGGTTTCTC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.52, C:0.14, G:0.07, T:0.28
Consensus pattern (15 bp):
AAATATATCAGTCAA
Found at i:32889538 original size:71 final size:71
Alignment explanation
Indices: 32889450--32889584 Score: 243
Period size: 71 Copynumber: 1.9 Consensus size: 71
32889440 GTGCTAGAAT
* *
32889450 GATTAAATAGCTTAAGAGTGTAATGAGAAAGGATTTAAAAGGTAATTAGACCCAAAATTTATTTG
1 GATTAAATAGCTTAAGAGTCTAATGAGAAAGGATTTAAAAGGCAATTAGACCCAAAATTTATTTG
32889515 GGATGG
66 GGATGG
*
32889521 GATTAAATAGCTTAAGAGTCTAATGAGAAAGGATTTAAAAGGCAATTAGACCCAAATTTTATTT
1 GATTAAATAGCTTAAGAGTCTAATGAGAAAGGATTTAAAAGGCAATTAGACCCAAAATTTATTT
32889585 TGGCTGGACG
Statistics
Matches: 61, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
71 61 1.00
ACGTcount: A:0.41, C:0.07, G:0.21, T:0.30
Consensus pattern (71 bp):
GATTAAATAGCTTAAGAGTCTAATGAGAAAGGATTTAAAAGGCAATTAGACCCAAAATTTATTTG
GGATGG
Found at i:32895220 original size:44 final size:45
Alignment explanation
Indices: 32895114--32895245 Score: 131
Period size: 44 Copynumber: 2.9 Consensus size: 45
32895104 ACAGGACAGA
* * *
32895114 ACAGAAATGAGCCATGTAAGTCCATATTAGAAATATGGCTTTAGAG
1 ACAGGAATAAGCCATGTAAGTCCATATTA-AAATATGGCATTAGAG
* * * *
32895160 ACAGGATTGAGCCATGTAAGTCCATATT-ATATATGGCATTGGAG
1 ACAGGAATAAGCCATGTAAGTCCATATTAAAATATGGCATTAGAG
* ** * *
32895204 ACATGAATAATTCATGTAAGTCCATATCAAAGACATGGCATT
1 ACAGGAATAAGCCATGTAAGTCCATATTAAA-ATATGGCATT
32895246 GGCATGATAT
Statistics
Matches: 71, Mismatches: 13, Indels: 4
0.81 0.15 0.05
Matches are distributed among these distances:
44 35 0.49
45 1 0.01
46 35 0.49
ACGTcount: A:0.37, C:0.14, G:0.20, T:0.28
Consensus pattern (45 bp):
ACAGGAATAAGCCATGTAAGTCCATATTAAAATATGGCATTAGAG
Found at i:32906279 original size:15 final size:15
Alignment explanation
Indices: 32906253--32906293 Score: 64
Period size: 16 Copynumber: 2.6 Consensus size: 15
32906243 ATTTTAAAAT
32906253 TTAAAAATATATTAAA
1 TTAAAAA-ATATTAAA
32906269 TTAAAAAATATTAAA
1 TTAAAAAATATTAAA
32906284 TGTAAAAAAT
1 T-TAAAAAAT
32906294 GTGATTTTTT
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
15 9 0.38
16 15 0.62
ACGTcount: A:0.63, C:0.00, G:0.02, T:0.34
Consensus pattern (15 bp):
TTAAAAAATATTAAA
Found at i:32906292 original size:17 final size:16
Alignment explanation
Indices: 32906253--32906292 Score: 55
Period size: 15 Copynumber: 2.5 Consensus size: 16
32906243 ATTTTAAAAT
*
32906253 TTAAAAATATATTAAA
1 TTAAAAAAATATTAAA
32906269 TT-AAAAAATATTAAA
1 TTAAAAAAATATTAAA
32906284 TGTAAAAAA
1 T-TAAAAAA
32906293 TGTGATTTTT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
15 13 0.62
16 3 0.14
17 5 0.24
ACGTcount: A:0.65, C:0.00, G:0.03, T:0.33
Consensus pattern (16 bp):
TTAAAAAAATATTAAA
Found at i:32907760 original size:27 final size:28
Alignment explanation
Indices: 32907730--32907790 Score: 115
Period size: 28 Copynumber: 2.2 Consensus size: 28
32907720 GTCAAGTTTA
32907730 TTAAAAAA-ATAAACAATTAAAAATTCT
1 TTAAAAAAGATAAACAATTAAAAATTCT
32907757 TTAAAAAAGATAAACAATTAAAAATTCT
1 TTAAAAAAGATAAACAATTAAAAATTCT
32907785 TTAAAA
1 TTAAAA
32907791 TTGTCATGAG
Statistics
Matches: 33, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
27 8 0.24
28 25 0.76
ACGTcount: A:0.62, C:0.07, G:0.02, T:0.30
Consensus pattern (28 bp):
TTAAAAAAGATAAACAATTAAAAATTCT
Found at i:32908625 original size:2 final size:2
Alignment explanation
Indices: 32908618--32908650 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
32908608 GATATACATA
32908618 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG T
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG T
32908651 AGTATGTTTG
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.00, C:0.00, G:0.48, T:0.52
Consensus pattern (2 bp):
TG
Found at i:32908669 original size:4 final size:4
Alignment explanation
Indices: 32908648--32908691 Score: 63
Period size: 4 Copynumber: 11.2 Consensus size: 4
32908638 TGTGTGTGTG
* *
32908648 TGTA -GTA TGTT TGCA TGTA TGTA TGTA TGTA TGTA TGTA TGTA T
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA T
32908692 TTACTTCTTT
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
3 3 0.09
4 32 0.91
ACGTcount: A:0.23, C:0.02, G:0.25, T:0.50
Consensus pattern (4 bp):
TGTA
Found at i:32911529 original size:27 final size:27
Alignment explanation
Indices: 32911445--32911529 Score: 71
Period size: 27 Copynumber: 3.1 Consensus size: 27
32911435 CATCCTTTGA
*
32911445 TAGTCTGTCGGGACACTAAATATAGGG
1 TAGTCTGTCGGGACACTAAACATAGGG
* * ** * * * * *
32911472 CAGACCATCGAGACGCTAAACACAAGA
1 TAGTCTGTCGGGACACTAAACATAGGG
*
32911499 TAGTCTGTCGGGACACTGAACATAGGG
1 TAGTCTGTCGGGACACTAAACATAGGG
32911526 TAGT
1 TAGT
32911530 AGCTCGCCAG
Statistics
Matches: 38, Mismatches: 20, Indels: 0
0.66 0.34 0.00
Matches are distributed among these distances:
27 38 1.00
ACGTcount: A:0.33, C:0.20, G:0.27, T:0.20
Consensus pattern (27 bp):
TAGTCTGTCGGGACACTAAACATAGGG
Found at i:32914047 original size:24 final size:24
Alignment explanation
Indices: 32914020--32914068 Score: 98
Period size: 24 Copynumber: 2.0 Consensus size: 24
32914010 TATTTAAAGA
32914020 TAGAAAAAATCGGTTCAACCGGCT
1 TAGAAAAAATCGGTTCAACCGGCT
32914044 TAGAAAAAATCGGTTCAACCGGCT
1 TAGAAAAAATCGGTTCAACCGGCT
32914068 T
1 T
32914069 GTATTGGTTC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.37, C:0.20, G:0.20, T:0.22
Consensus pattern (24 bp):
TAGAAAAAATCGGTTCAACCGGCT
Found at i:32914319 original size:12 final size:12
Alignment explanation
Indices: 32914276--32914336 Score: 52
Period size: 12 Copynumber: 5.0 Consensus size: 12
32914266 CGGACATTAT
32914276 TAAAGAAGAAAAA
1 TAAAGAA-AAAAA
*
32914289 AAAAG-AAAAAA
1 TAAAGAAAAAAA
* *
32914300 TTAGGAAAAAAA
1 TAAAGAAAAAAA
*
32914312 TAAAGAAAGAAA
1 TAAAGAAAAAAA
*
32914324 TAATGTAAAAAAA
1 TAAAG-AAAAAAA
32914337 AGAAAGAGAA
Statistics
Matches: 37, Mismatches: 9, Indels: 4
0.74 0.18 0.08
Matches are distributed among these distances:
11 7 0.19
12 20 0.54
13 10 0.27
ACGTcount: A:0.75, C:0.00, G:0.13, T:0.11
Consensus pattern (12 bp):
TAAAGAAAAAAA
Found at i:32915298 original size:68 final size:68
Alignment explanation
Indices: 32915217--32915481 Score: 372
Period size: 68 Copynumber: 3.9 Consensus size: 68
32915207 GTATGTCCGA
* * *
32915217 TTGAGGTTTTACATACTGTCCAATATGAAAATTTTAAGACAAATTTGGTTGAATTAAGTGTTGTC
1 TTGAGGTTATACATGCTGTCCAATATGAAAATTTTAAGACAAATTTGGTTGAATTAAGTGCTGTC
32915282 TTG
66 TTG
* * *
32915285 TTGAGGTTATACATGCTG-CCGAATACGAAAATGTTCAGACAAATTTGGTTGAATTAAGTGCTGT
1 TTGAGGTTATACATGCTGTCC-AATATGAAAATTTTAAGACAAATTTGGTTGAATTAAGTGCTGT
32915349 CTTG
65 CTTG
** *
32915353 TTGAGGTTATACATGCTGTCCAACGTG-AAATTTTGAAGACAAATTTGGTTGAATTAAGTGCTAT
1 TTGAGGTTATACATGCTGTCCAATATGAAAATTTT-AAGACAAATTTGGTTGAATTAAGTGCTGT
32915417 CTTG
65 CTTG
* * * * *
32915421 TTAAGGTTATACATGCTGTCCAATGTGAAAATTTTAAGACAAAATCGGTTGGATTAAGTGC
1 TTGAGGTTATACATGCTGTCCAATATGAAAATTTTAAGACAAATTTGGTTGAATTAAGTGC
32915482 ATGACCGCAT
Statistics
Matches: 176, Mismatches: 17, Indels: 8
0.88 0.08 0.04
Matches are distributed among these distances:
67 8 0.05
68 159 0.90
69 9 0.05
ACGTcount: A:0.31, C:0.11, G:0.22, T:0.36
Consensus pattern (68 bp):
TTGAGGTTATACATGCTGTCCAATATGAAAATTTTAAGACAAATTTGGTTGAATTAAGTGCTGTC
TTG
Found at i:32931271 original size:21 final size:21
Alignment explanation
Indices: 32931246--32931289 Score: 70
Period size: 21 Copynumber: 2.1 Consensus size: 21
32931236 ATTGGGCTGT
* *
32931246 TACACTCCACCTGTTTTGGAG
1 TACACTCCACCTGCTGTGGAG
32931267 TACACTCCACCTGCTGTGGAG
1 TACACTCCACCTGCTGTGGAG
32931288 TA
1 TA
32931290 TTGCTCGTCT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.20, C:0.30, G:0.20, T:0.30
Consensus pattern (21 bp):
TACACTCCACCTGCTGTGGAG
Found at i:32939041 original size:30 final size:30
Alignment explanation
Indices: 32939007--32939101 Score: 145
Period size: 30 Copynumber: 3.2 Consensus size: 30
32938997 CCTTTGCCAT
*
32939007 CACCAACTCCACCAGCCACACTTGCTCCAC
1 CACCAACTCCACTAGCCACACTTGCTCCAC
* *
32939037 CACCAACTTCACTAGCCACACTTGCTCTAC
1 CACCAACTCCACTAGCCACACTTGCTCCAC
* *
32939067 TACCTACTCCACTAGCCACACTTGCTCCAC
1 CACCAACTCCACTAGCCACACTTGCTCCAC
32939097 CACCA
1 CACCA
32939102 CTTGTACCTA
Statistics
Matches: 56, Mismatches: 9, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 56 1.00
ACGTcount: A:0.26, C:0.48, G:0.06, T:0.19
Consensus pattern (30 bp):
CACCAACTCCACTAGCCACACTTGCTCCAC
Found at i:32940770 original size:76 final size:76
Alignment explanation
Indices: 32940670--32941782 Score: 562
Period size: 76 Copynumber: 14.4 Consensus size: 76
32940660 GTGAGCCAAT
* * *
32940670 GCTCAACTCACCACTCGCAATATGAGCTAATTTTTTTTGAAAGACAGAAATTGAAAATACCTCAA
1 GCTCAACTCACCTCTCGCAATATGAGTTAATTTTTTTTGAAAGACAGAAATTGAAAATACCTCAG
*
32940735 CGTGTCTTGAG
66 CGTGTCCTGAG
* * * *
32940746 GCTCAACTCACTTCTTGCAGTATGAGTTGAA--TTTTTTGAAAGACAAAAATTGAAAATACCTC-
1 GCTCAACTCACCTCTCGCAATATGAGTT-AATTTTTTTTGAAAGACAGAAATTGAAAATACCTCA
*
32940808 GACGTGTCTTGAG
65 G-CGTGTCCTGAG
* * * * * * * *
32940821 GCTCAACTCACTTTTTGTAGTATGAGTTGAA----TTCTG-AA-ACAGAAA-TAAAAATTATCTC
1 GCTCAACTCACCTCTCGCAATATGAGTT-AATTTTTTTTGAAAGACAGAAATTGAAAA-TACCTC
**
32940879 AGCGTGTCCCAAG
64 AGCGTGTCCTGAG
* * * *
32940892 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTAAAGACAGAAATTGAAATTACGTCAG
1 GCTCAACTCACCTCTCGCAATATGAGTTAATTTTTTTTGAAAGACAGAAATTGAAAATACCTCAG
32940957 CGTGTCCTGAG
66 CGTGTCCTGAG
* * * *
32940968 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTAAAGACAGAAATTGAAATTACGTCAG
1 GCTCAACTCACCTCTCGCAATATGAGTTAATTTTTTTTGAAAGACAGAAATTGAAAATACCTCAG
32941033 CGTGTCCTGAG
66 CGTGTCCTGAG
* * * *
32941044 GCTCAACTCACCTCTCGCAATATGAGCTGA-TTTTTTTGAACCG-TAGAAATTAAAGAACAGAAA
1 GCTCAACTCACCTCTCGCAATATGAGTTAATTTTTTTTGAA-AGACAGAAATT---G---A-AAA
** ** *
32941107 TAGAAAATACCTCAGTGT-ATGA-
58 T---ACCT-CAGC-GTGTCCTGAG
* * * * ** * * * * *
32941129 -CCCGAGGCTCAACTCAC-CTCT-TGCAATATGAGTTTGTTTTTTTAAAAACAAACAGAAATTGA
1 GCTC-A-ACTCACCTCTCGCAATATG-AGT-T-AATTTTTTTT-----GAA-AGACAGAAATTGA
**
32941191 AAATACCTCAGCGTACCCTGAG
55 AAATACCTCAGCGTGTCCTGAG
* *****
32941213 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTGACAAACAGAGACAGAAATTGAAAATACCTC
1 GCTCAACTCACCTCTCGCAATATGAGTTAATTTTTTTTGA-A-AGACAGAAATTGAAAATACCTC
*
32941278 AGCACGTGAGCC-GAG
64 AG--CGTG-TCCTGAG
* * * * * *
32941293 GCTCAACTCACCTCTTGCAATATGAGTTGA-TTTTTTTGACA-ATAGAAATTGCAATTACCTCAG
1 GCTCAACTCACCTCTCGCAATATGAGTTAATTTTTTTTGAAAGACAGAAATTGAAAATACCTCAG
* *
32941356 CATGTCCCGAG
66 CGTGTCCTGAG
* * ** * * * * *
32941367 GCTTAACTCACCTCTTGCAATATGAGTTTGTTTTTTTTTATAAAAATAGAATTTGAAAATATCTC
1 GCTCAACTCACCTCTCGCAATATGAG-TTAATTTTTTTT-GAAAGACAGAAATTGAAAATACCTC
32941432 AGCGTGTCCTGAG
64 AGCGTGTCCTGAG
* * * * *
32941445 GCTCAACTCACTTATCGCAACATGAGTTGA---TTTTTGACAA-ACAGCAATTGAAAATACCTCA
1 GCTCAACTCACCTCTCGCAATATGAGTTAATTTTTTTTGA-AAGACAGAAATTGAAAATACCTCA
* *
32941506 GCATG-CCTCGAA
65 GCGTGTCCT-GAG
* * * ***** * * *
32941518 GCTCAACTCACCTCCCACAATATGAGTTGATTTAAAAAACAGACATAAAAATAGAAATTGAAAGT
1 GCTCAACTCACCTCTCGCAATATGAGTTAATTT---TTTTTG----AAAGACAGAAATTGAAAAT
* * * *
32941583 AACTCAACACGTGAGCC-AAG
59 ACCTCA--GCGTG-TCCTGAG
* * * *
32941603 GCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTTGAAAG-TAGAATTTGAAAATACCTCCG
1 GCTCAACTCACCTCTCGCAATATGAGTTAATTTTTTTTGAAAGACAGAAATTGAAAATACCTCAG
** *
32941666 CGTACCCCGAG
66 CGTGTCCTGAG
* * ** *
32941677 GCTCAACTCACCTCCCGCAACATGA-TT--TGATTTTTGACAA-ACAGCAATTGAAAATACCTCA
1 GCTCAACTCACCTCTCGCAATATGAGTTAATTTTTTTTGA-AAGACAGAAATTGAAAATACCTCA
* **
32941738 GCGTGCCCCAAG
65 GCGTGTCCTGAG
* *
32941750 GCTCAACTCACCTCCCGCAATATGAGTTGATTT
1 GCTCAACTCACCTCTCGCAATATGAGTTAATTT
32941783 AAAAAACAGA
Statistics
Matches: 801, Mismatches: 162, Indels: 148
0.72 0.15 0.13
Matches are distributed among these distances:
70 6 0.01
71 42 0.05
72 13 0.02
73 111 0.14
74 71 0.09
75 91 0.11
76 194 0.24
77 17 0.02
78 73 0.09
79 5 0.01
80 35 0.04
81 4 0.00
82 10 0.01
83 32 0.04
84 13 0.02
85 42 0.05
86 14 0.02
87 10 0.01
88 7 0.01
91 1 0.00
93 3 0.00
94 7 0.01
ACGTcount: A:0.33, C:0.22, G:0.17, T:0.29
Consensus pattern (76 bp):
GCTCAACTCACCTCTCGCAATATGAGTTAATTTTTTTTGAAAGACAGAAATTGAAAATACCTCAG
CGTGTCCTGAG
Found at i:32941392 original size:232 final size:227
Alignment explanation
Indices: 32940633--32941876 Score: 820
Period size: 232 Copynumber: 5.3 Consensus size: 227
32940623 TAGACATTAA
* * * * * * * * *
32940633 AAATAGAAATTGAAAATAGCTCAGCACGTGAGCCAATGCTCAACTCACCACTCGCAATATGAG-C
1 AAATAGAAATTGAAAGTAACTCAACAC-TGACCCGAGGCTCAACTCACCTCTTGCAATATGAGTT
* * * * * * ** * * *
32940697 TAATTTTTTTTGAAAGACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACTTCTT
65 TGA-TTTTTTTAAAAAATAGAATTTGAAAATACCTCAGCGTACCCTGAGGCTCAACTCACCTCTC
** ** **
32940762 GCAGTATGAGTTGAATTTTTTGA-AAGACAAAAATTGAAAATACCTC-G-ACGTGTCTTGAGGCT
129 GCAACATGAGTTG-A-TTTTTGACAA-ACAGCAATTGAAAATACCTCAGCACGTG-CCCGAGGCT
* *** * *
32940824 CAACTCACTTTTTGTAGTATGAGTTGAATTCTGAAACAG--
190 CAACTCACCTCCCGCAATATGAGTTG-ATT-T-AAACAGAC
* * * * * *
32940863 AAATAAAAATT---A-T--CTCAGC-GTGTCCCAAGGCTCAACTCACCTCTCGCAATATGAG-TT
1 AAATAGAAATTGAAAGTAACTCAACACTGACCCGAGGCTCAACTCACCTCTTGCAATATGAGTTT
* * * * * * **
32940920 GATTTTTTTTTAAAGACAGAAATTGAAATTACGTCAGCGTGTCCTGAGGCTCAACTCACCTCTCG
66 GA-TTTTTTTAAAAAATAGAATTTGAAAATACCTCAGCGTACCCTGAGGCTCAACTCACCTCTCG
* * * * * *
32940985 CAATATGAGTTGATTTTTTTTTA-AAGACAGAAATTGAAATTACGTCAG--CGTGTCCTGAGGCT
130 CAACATGAGTTGA---TTTTTGACAA-ACAGCAATTGAAAATACCTCAGCACGTG-CCCGAGGCT
* * * *
32941047 CAACTCACCTCTCGCAATATGAGCTGATTTTTTTGAACCGTAGAAATTAA
190 CAACTCACCTCCCGCAATATGAGTTGA----TTT-AAAC--AG-----AC
* * * * **
32941097 AGAACAGAAATAGAAAATACCTCAGTGTA-TGACCCGAGGCTCAACTCACCTCTTGCAATATGAG
1 A-AATAGAAATTGAAAGTAACTCA--ACACTGACCCGAGGCTCAACTCACCTCTTGCAATATGAG
* *
32941161 TTTG-TTTTTTTAAAAACAAACAGAAATTGAAAATACCTCAGCGTACCCTGAGGCTCAACTCACC
63 TTTGATTTTTTT--AAA-AAATAGAATTTGAAAATACCTCAGCGTACCCTGAGGCTCAACTCACC
* *
32941225 TCTCGCAATATGAGTTGA-TTTTGACAAACAGAGACAGAAATTGAAAATACCTCAGCACGTGAGC
125 TCTCGCAACATGAGTTGATTTTTGACAAAC--AG-C---AATTGAAAATACCTCAGCACGTG-CC
** ****
32941289 CGAGGCTCAACTCACCTCTTGCAATATGAGTTGATTT-TTTTGAC
183 CGAGGCTCAACTCACCTCCCGCAATATGAGTTGATTTAAACAGAC
* * * * * *
32941333 -AATAGAAATTGCAATTACCTCAGCA-TGTCCCGAGGCTTAACTCACCTCTTGCAATATGAGTTT
1 AAATAGAAATTGAAAGTAACTCAACACTGACCCGAGGCTCAACTCACCTCTTGCAATATGAGTTT
* * ** * *
32941396 GTTTTTTTTTATAAAAATAGAATTTGAAAATATCTCAGCGTGTCCTGAGGCTCAACTCACTTATC
66 G-ATTTTTTTA-AAAAATAGAATTTGAAAATACCTCAGCGTACCCTGAGGCTCAACTCACCTCTC
*
32941461 GCAACATGAGTTGATTTTTGACAAACAGCAATTGAAAATACCTCAGCA--TGCCTCGAAGCTCAA
129 GCAACATGAGTTGATTTTTGACAAACAGCAATTGAAAATACCTCAGCACGTGCC-CGAGGCTCAA
*
32941524 CTCACCTCCCACAATATGAGTTGATTTAAAAAACAGAC
193 CTCACCTCCCGCAATATGAGTTGATTT---AAACAGAC
* * *
32941562 ATAAAAATAGAAATTGAAAGTAACTCAACACGTGAGCCAAGGCTCAACTCACCTCTCGCAATATG
1 ----AAATAGAAATTGAAAGTAACTCAACAC-TGACCCGAGGCTCAACTCACCTCTTGCAATATG
* * * *
32941627 AG-TTGATTTTTTT-GAAAGTAGAATTTGAAAATACCTCCGCGTACCCCGAGGCTCAACTCACCT
61 AGTTTGATTTTTTTAAAAAATAGAATTTGAAAATACCTCAGCGTACCCTGAGGCTCAACTCACCT
* * *
32941690 CCCGCAACATGATTTGATTTTTGACAAACAGCAATTGAAAATACCTCAG--CGTGCCCCAAGGCT
126 CTCGCAACATGAGTTGATTTTTGACAAACAGCAATTGAAAATACCTCAGCACGTG-CCCGAGGCT
32941753 CAACTCACCTCCCGCAATATGAGTTGATTTAAAAAACAGAC
190 CAACTCACCTCCCGCAATATGAGTTGATTT---AAACAGAC
* * * * *
32941794 ATAAAAACAGAAATTGAAAGTGACTCAACACGTGAGCCAAGGCTCAACTCACCTCTGGCAATATG
1 ----AAATAGAAATTGAAAGTAACTCAACAC-TGACCCGAGGCTCAACTCACCTCTTGCAATATG
*
32941859 AG-TTGATTTTTTTGAAAA
61 AGTTTGATTTTTTTAAAAA
32941877 CAGAAATGAA
Statistics
Matches: 848, Mismatches: 107, Indels: 115
0.79 0.10 0.11
Matches are distributed among these distances:
221 1 0.00
222 101 0.12
223 60 0.07
224 8 0.01
225 40 0.05
226 3 0.00
227 22 0.03
229 3 0.00
230 11 0.01
231 2 0.00
232 307 0.36
233 18 0.02
234 54 0.06
235 10 0.01
236 31 0.04
238 1 0.00
239 1 0.00
241 12 0.01
242 9 0.01
243 35 0.04
244 5 0.01
245 63 0.07
247 15 0.02
249 36 0.04
ACGTcount: A:0.34, C:0.21, G:0.17, T:0.28
Consensus pattern (227 bp):
AAATAGAAATTGAAAGTAACTCAACACTGACCCGAGGCTCAACTCACCTCTTGCAATATGAGTTT
GATTTTTTTAAAAAATAGAATTTGAAAATACCTCAGCGTACCCTGAGGCTCAACTCACCTCTCGC
AACATGAGTTGATTTTTGACAAACAGCAATTGAAAATACCTCAGCACGTGCCCGAGGCTCAACTC
ACCTCCCGCAATATGAGTTGATTTAAACAGAC
Found at i:32941777 original size:305 final size:303
Alignment explanation
Indices: 32941099--32941782 Score: 752
Period size: 310 Copynumber: 2.2 Consensus size: 303
32941089 GAAATTAAAG
* * *
32941099 AACAGAAATAGAAAATACCTCAGTGTATGACCCGAGGCTCAACTCACCTCTTGCAATATGAGTTT
1 AACAG-AATTGAAAATACCTCAGCG--TGACCCGAGGCTCAACTCACCTCTCGCAATATGAG-TT
* * * *
32941164 GTTTTTTTAAAAACAAACAGAAATTGAAAATACCTCAGCGTACCCTGAGGCTCAACTCACCTCTC
62 G-ATTTTT--AAACAAACAGAAATTGAAAATACCTCAGCATACCCTGAAGCTCAACTCACCTCCC
* * * * * * *
32941229 GCAATATGAGTTGATTTTGACAAACAGAGACAGAAATTGAAAATACCTCAGCACGTGAGCCGAGG
124 ACAATATGAGTTGATTTTAAAAAACAGAAACAGAAATTGAAAATAACTCAACACGTGAGCCAAGG
* * *
32941294 CTCAACTCACCTCTTGCAATATGAGTTGATTTTTTTGACAATAGAAATTGCAATTACCTCAGCAT
189 CTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGACAATAGAAATTGAAAATACCTCAGCAT
** * ** * * *
32941359 GTCCCGAGGCTTAACTCACCTCTTGCAATATGAGTTTGTTTTTTTTTATAAA
254 ACCCCGAGGCTCAACTCACCTCCCGCAACATGAGTTTG--TATTTTTAGAAA
* * * * * * *
32941411 AATAGAATTTGAAAATATCTCAGCGTGTCCTGAGGCTCAACTCACTTATCGCAACATGAGTTGAT
1 AACAGAA-TTGAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
* * *
32941476 TTTT-GACAAACAGCAATTGAAAATACCTCAGCAT-GCCTCGAAGCTCAACTCACCTCCCACAAT
65 TTTTAAACAAACAGAAATTGAAAATACCTCAGCATACCCT-GAAGCTCAACTCACCTCCCACAAT
* *
32941539 ATGAGTTGA-TTTAAAAAACAGACATAAAAATAGAAATTGAAAGTAACTCAACACGTGAGCCAAG
129 ATGAGTTGATTTTAAAAAACAG------AAACAGAAATTGAAAATAACTCAACACGTGAGCCAAG
* *
32941603 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGA-AAGTAGAATTTGAAAATACCTCCGC
188 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGACAA-TAGAAATTGAAAATACCTCAGC
* *
32941667 GTACCCCGAGGCTCAACTCACCTCCCGCAACATGA-TTTG-ATTTTT-GACA
252 ATACCCCGAGGCTCAACTCACCTCCCGCAACATGAGTTTGTATTTTTAGAAA
* * *
32941716 AACAGCAATTGAAAATACCTCAGCGTGCCCCAAGGCTCAACTCACCTCCCGCAATATGAGTTGAT
1 AACAG-AATTGAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
32941781 TT
65 TT
32941783 AAAAAACAGA
Statistics
Matches: 312, Mismatches: 50, Indels: 27
0.80 0.13 0.07
Matches are distributed among these distances:
304 13 0.04
305 114 0.37
306 7 0.02
308 5 0.02
309 9 0.03
310 144 0.46
311 2 0.01
312 18 0.06
ACGTcount: A:0.34, C:0.23, G:0.16, T:0.27
Consensus pattern (303 bp):
AACAGAATTGAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATT
TTTAAACAAACAGAAATTGAAAATACCTCAGCATACCCTGAAGCTCAACTCACCTCCCACAATAT
GAGTTGATTTTAAAAAACAGAAACAGAAATTGAAAATAACTCAACACGTGAGCCAAGGCTCAACT
CACCTCTCGCAATATGAGTTGATTTTTTTGACAATAGAAATTGAAAATACCTCAGCATACCCCGA
GGCTCAACTCACCTCCCGCAACATGAGTTTGTATTTTTAGAAA
Found at i:32952428 original size:14 final size:14
Alignment explanation
Indices: 32952409--32952439 Score: 62
Period size: 14 Copynumber: 2.2 Consensus size: 14
32952399 TGGAATAAAT
32952409 ATCAGGAAAGAAGG
1 ATCAGGAAAGAAGG
32952423 ATCAGGAAAGAAGG
1 ATCAGGAAAGAAGG
32952437 ATC
1 ATC
32952440 GCGAGAACAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.48, C:0.10, G:0.32, T:0.10
Consensus pattern (14 bp):
ATCAGGAAAGAAGG
Found at i:32957408 original size:230 final size:232
Alignment explanation
Indices: 32957003--32957463 Score: 746
Period size: 230 Copynumber: 2.0 Consensus size: 232
32956993 TCATTTCTGT
* * * *
32957003 TTTCAAAAAAATCAACTCATATTACGAGAAGTGAGTTGAGTCTTGGCTCACGTGTTGAGTCACTT
1 TTTCAAAAAAATCAACGCATATCACGAGAAGTAAGTTGAGCCTTGGCTCACGTGTTGAGTCACTT
32957068 TCAATTTCTGTTTTTATGTCTATTTTTTAAATCAACTCATATTGCGGGAGGTGAGTTAAGCCTCG
66 TCAATTTCTGTTTTTATGTCTATTTTTTAAATCAACTCATATTGCGGGAGGTGAGTTAAGCCTCG
* * *
32957133 GGGCACGCTGAGGTATTTTCAATTGCTGTTTGTCAAAAGTCAACTCATGTTGCGGGAGGTGAGTT
131 GGGCACGCTGAGGTATTTTCAATTGCTGTTTGTCAAAAATCAACTCATGTTGCGAGAAGTGAGTT
* * *
32957198 GAG-C-CGGGGCACGCCGAGGTATTTTCAAATTCTAC
196 GAGCCTCAGGACACGCCGAGATATTTTCAAATTCTAC
* * *
32957233 TTTCAAAAAAATTAACGCATATCACGAGAGGTAAGTTGAGCCTTGGCTTACGTGTTGAGTCACTT
1 TTTCAAAAAAATCAACGCATATCACGAGAAGTAAGTTGAGCCTTGGCTCACGTGTTGAGTCACTT
* *
32957298 TCAATTTCTGTTTTTATGTCTATTTTTTAAATCAACTCATATTGCGGGAGGTGAGTTGAGCCTTG
66 TCAATTTCTGTTTTTATGTCTATTTTTTAAATCAACTCATATTGCGGGAGGTGAGTTAAGCCTCG
* *
32957363 GGGCACGCTGAGGTATTTTCAATTGCTGTTTGTTAAAAATCAACTCATGTTGCGATAAGTGAGTT
131 GGGCACGCTGAGGTATTTTCAATTGCTGTTTGTCAAAAATCAACTCATGTTGCGAGAAGTGAGTT
*
32957428 GAGCCTCAGGACACGCTGAGATATTTTCAAATTCTA
196 GAGCCTCAGGACACGCCGAGATATTTTCAAATTCTA
32957464 TTTTTATAAA
Statistics
Matches: 211, Mismatches: 18, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
230 184 0.87
231 1 0.00
232 26 0.12
ACGTcount: A:0.26, C:0.17, G:0.23, T:0.35
Consensus pattern (232 bp):
TTTCAAAAAAATCAACGCATATCACGAGAAGTAAGTTGAGCCTTGGCTCACGTGTTGAGTCACTT
TCAATTTCTGTTTTTATGTCTATTTTTTAAATCAACTCATATTGCGGGAGGTGAGTTAAGCCTCG
GGGCACGCTGAGGTATTTTCAATTGCTGTTTGTCAAAAATCAACTCATGTTGCGAGAAGTGAGTT
GAGCCTCAGGACACGCCGAGATATTTTCAAATTCTAC
Found at i:32957656 original size:154 final size:152
Alignment explanation
Indices: 32957096--32958394 Score: 971
Period size: 154 Copynumber: 8.5 Consensus size: 152
32957086 TCTATTTTTT
* * * * *
32957096 AAATCAACTCATATTGCGGGAGGTGAGTTAAGCCTCGGGGCAC--GCTGAGGTATTTTCAATTGC
1 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGTGCTGAGGTATTTTCAATTTC
* * * * * * *
32957159 TG-T-TTGT-CAAAAGTCAACTCATGTTGCGGGAGGTGAGTTGAG-C-CGGGGCACGCCGAGGTA
66 TGTTCTTTTAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTA
* *
32957219 TTTTCAAATTCTACTT-TCAAAA
131 ATTTCAATTTCTA-TTGTCAAAA
* * ** * * * *
32957241 AAATTAACGCATATCACGAGAGGTAAGTTGAGCCT-TGG-CTTACGTGTTGA-GTCACTTTCAAT
1 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGAC--ACGTGCTGAGGT-ATTTTCAAT
* *** * * *
32957303 TTCTGTTTTTATGTCTATTTTTTAAATCAACTCATATTGCGGGAGGTGAGTTGAGCCTTGGGGCA
63 TTCTG-TTCT-T-T-TA---AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACA
* * * *
32957368 CGCTGAGGTATTTTCAATTGCTGTTTGT--TAA
121 CGCTGAGGTAATTTCAATTTCT-ATTGTCAAAA
* * * * *
32957399 AAATCAACTCATGTTGCGATAAGTGAGTTGAGCCTCAGGACAC--GCTGAGATATTTTCAAATTC
1 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGTGCTGAGGTATTTTCAATTTC
* * * *
32957462 TATT-TTTATAAAAAAAAACAAACTCATATTGCAAGAGGTGAGTTGAGCCTCGGGACATGCTGAG
66 TGTTCTTT-T-AAAAAAATC-AACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAG
*
32957526 GTAATTGCAATTTCTATTGTCAAAA
128 GTAATTTCAATTTCTATTGTCAAAA
* *
32957551 AAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTC-GGCTCACGTGCTGAGGTATTTTCAATTT
1 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG-ACACGTGCTGAGGTATTTTCAATTT
***
32957615 CTGTCTCTGTTTGTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGG-CACGCTGA
65 CTGT-TCT-TTTAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GGGACACGCTGA
* *
32957679 GGTATTTTCAATTTCTGTTTGTCAAAA
127 GGTAATTTCAATTTCT-ATTGTCAAAA
* *
32957706 AAACCAACTCATATTGTGAGAGGTGAGTTGAGCCTCAAGG-CAC--GCTGAGGTATTTTCAATTT
1 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-AGGACACGTGCTGAGGTATTTTCAATTT
* ** ** * *
32957768 CTGTTTGTTTTTAAAAAAAAAAACTCATATTGTAAGAGGTGAGTTGAGCCTCGGGTCATACGCTA
65 CTG-TT-CTTTTAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGG--ACACGCTG
**
32957833 AGGTATTTTCCATTTCTGTTCTTTAATTTCTACGGTTCAAAA
126 AGGTA------A----T-TTC---AATTTCTATTG-TCAAAA
* * * * *
32957875 AAATCAGCTCATATTGCGAGAGGTAAGTTGAGCCTTGACTGACACGT--TGAGGTATTTTTAATT
1 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCC-TCA-GGACACGTGCTGAGGTATTTTCAATT
* * * *
32957938 TCTG-CCTTTAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGTTGAGG
64 TCTGTTCTTTTAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGG
* * *
32958002 TAATTTCAATTTCTGTCTTTAAAAAAA
129 TAATTTCAATTTCTAT-TGT--CAAAA
*
32958029 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGT--TGAGGTAATTTCAATTTC
1 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGTGCTGAGGTATTTTCAATTTC
* * * *
32958092 TG-TCTTTAAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGGCTTGGGACACGCTGAGA
66 TGTTCTTT--TAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGG
** *
32958156 TAATTTTTATTTCTGTT-TC--AA
129 TAATTTCAATTTCTATTGTCAAAA
* * * * * *
32958177 AATTCAACTCATACTACAAGAAGTGAGTTGAGCCTCAAGACACGT--TGAGGTATTTTCAATTTC
1 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGTGCTGAGGTATTTTCAATTTC
* * * * * ** * *
32958240 TG-TCTTTCAAAAAATTCAACTCATACTGCAAGAAGTGAGTTGAGCCTCAAGACAAGTTGAGGTA
66 TGTTCTTTTAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTA
* * *
32958304 TTTTCAATTTCTGTCTTTCAAAA
131 ATTTCAATTTCTAT-TGTCAAAA
* * * * *
32958327 AAATCAGCTCATATTGCGAGAGGTGAGTTGAACCTCA--AGAC--GCTGAGGTGTTTTCCATTTC
1 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGTGCTGAGGTATTTTCAATTTC
32958388 TGTTCTT
66 TGTTCTT
32958395 CAATTTCTGT
Statistics
Matches: 925, Mismatches: 156, Indels: 142
0.76 0.13 0.12
Matches are distributed among these distances:
143 1 0.00
144 2 0.00
145 30 0.03
146 58 0.06
147 17 0.02
148 88 0.10
149 5 0.01
150 41 0.04
151 54 0.06
152 80 0.09
153 65 0.07
154 174 0.19
155 69 0.07
156 18 0.02
157 35 0.04
158 32 0.03
159 29 0.03
160 3 0.00
165 1 0.00
166 13 0.01
168 42 0.05
169 44 0.05
170 2 0.00
171 22 0.02
ACGTcount: A:0.29, C:0.17, G:0.22, T:0.33
Consensus pattern (152 bp):
AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGTGCTGAGGTATTTTCAATTTC
TGTTCTTTTAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTA
ATTTCAATTTCTATTGTCAAAA
Found at i:32957728 original size:75 final size:74
Alignment explanation
Indices: 32957326--32957852 Score: 538
Period size: 78 Copynumber: 6.9 Consensus size: 74
32957316 TCTATTTTTT
* * *
32957326 AAATCAACTCATATTGCGGGAGGTGAGTTGAGCCTTGGGGCACGCTGAGGTATTTTCAATTGCTG
1 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCC-TCGGGCACGCTGAGGTATTTTCAATTTCTG
*
32957391 TTTGT--TAA
65 TTTGTCAAAA
* * * * * *
32957399 AAATCAACTCATGTTGCGATAAGTGAGTTGAGCCTCAGGACACGCTGAGATATTTTCAAATTCTA
1 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GGGCACGCTGAGGTATTTTC-AATT-TC
* * *
32957464 TTTTTATAAAAA
63 TGTTTGTCAAAA
* * * * *
32957476 AAAACAAACTCATATTGCAAGAGGTGAGTTGAGCCTCGGGACATGCTGAGGTAATTGCAATTTCT
1 AAATC-AACTCATATTGCGAGAGGTGAGTTGAGCCTCGGG-CACGCTGAGGTATTTTCAATTTCT
*
32957541 -ATTGTCAAAA
64 GTTTGTCAAAA
* *
32957551 AAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTCGGCTCACGTGCTGAGGTATTTTCAATTTC
1 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGG-GCAC--GCTGAGGTATTTTCAATTTC
****
32957616 TGTCTCTGTTTGTCA
63 TGT-T-TG-TCAAAA
32957631 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAATTTCTG
1 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GGGCACGCTGAGGTATTTTCAATTTCTG
32957696 TTTGTCAAAA
65 TTTGTCAAAA
* * *
32957706 AAACCAACTCATATTGTGAGAGGTGAGTTGAGCCTCAAGGCACGCTGAGGTATTTTCAATTTCTG
1 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GGGCACGCTGAGGTATTTTCAATTTCTG
*
32957771 TTTGTTTTTAAAA
65 TTTG---TCAAAA
** ** * *
32957784 AAAAAAACTCATATTGTAAGAGGTGAGTTGAGCCTCGGGTCATACGCTAAGGTATTTTCCATTTC
1 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGG-C--ACGCTGAGGTATTTTCAATTTC
32957849 TGTT
63 TGTT
32957853 CTTTAATTTC
Statistics
Matches: 381, Mismatches: 52, Indels: 35
0.81 0.11 0.07
Matches are distributed among these distances:
72 1 0.00
73 48 0.13
74 39 0.10
75 84 0.22
76 23 0.06
77 15 0.04
78 103 0.27
79 2 0.01
80 64 0.17
81 2 0.01
ACGTcount: A:0.29, C:0.17, G:0.23, T:0.32
Consensus pattern (74 bp):
AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGCACGCTGAGGTATTTTCAATTTCTGT
TTGTCAAAA
Found at i:32958207 original size:71 final size:73
Alignment explanation
Indices: 32957915--32958389 Score: 366
Period size: 75 Copynumber: 6.4 Consensus size: 73
32957905 AGCCTTGACT
* * * * * * * *
32957915 GACACGTTGAGGTATTTTTAATTTCTGCCTTTAAAAAAAATCAACTCATATTGCGAGAGGTGAGT
1 GACACGCTGAGATATTTTCAATTTCTG-CTTT-CAAAAATTCAACTCATACTGCAAGAAGTGAGT
*
32957980 TGAGCCTCAG
64 TGAGCCTCAA
* * * * * * * *
32957990 GACACGTTGAGGTAATTTCAATTTCTGTCTTTAAAAAAAAAATCAACTCATATTGCGAGAGGTGA
1 GACACGCTGAGATATTTTCAATTTCTG-CTTT---CAAAAATTCAACTCATACTGCAAGAAGTGA
*
32958055 GTTGAGCCTCAG
62 GTTGAGCCTCAA
* * * * * * * *
32958067 GACACGTTGAGGTAATTTCAATTTCTGTCTTTAAAAAAAAAATCAACTCATATTGCGAGAGGTGA
1 GACACGCTGAGATATTTTCAATTTCTG-CTTT---CAAAAATTCAACTCATACTGCAAGAAGTGA
* ***
32958132 GTTGAGGCTTGG
62 GTTGAGCCTCAA
* *
32958144 GACACGCTGAGATAATTTT-TATTTCTG-TTTC-AAAATTCAACTCATACTACAAGAAGTGAGTT
1 GACACGCTGAGAT-ATTTTCAATTTCTGCTTTCAAAAATTCAACTCATACTGCAAGAAGTGAGTT
32958206 GAGCCTCAA
65 GAGCCTCAA
* *
32958215 GACACGTTGAGGTATTTTCAATTTCTGTCTTTCAAAAAATTCAACTCATACTGCAAGAAGTGAGT
1 GACACGCTGAGATATTTTCAATTTCTG-CTTTC-AAAAATTCAACTCATACTGCAAGAAGTGAGT
32958280 TGAGCCTCAA
64 TGAGCCTCAA
* * * * * * * *
32958290 GACAAGTTGAGGTATTTTCAATTTCTGTCTTTCAAAAAAATCAGCTCATATTGCGAGAGGTGAGT
1 GACACGCTGAGATATTTTCAATTTCTG-CTTTC-AAAAATTCAACTCATACTGCAAGAAGTGAGT
*
32958355 TGAACCTCAA
64 TGAGCCTCAA
* * *
32958365 G--ACGCTGAGGTGTTTTCCATTTCTG
1 GACACGCTGAGATATTTTCAATTTCTG
32958390 TTCTTCAATT
Statistics
Matches: 357, Mismatches: 35, Indels: 18
0.87 0.09 0.04
Matches are distributed among these distances:
70 5 0.01
71 49 0.14
73 24 0.07
75 140 0.39
77 135 0.38
78 4 0.01
ACGTcount: A:0.31, C:0.16, G:0.20, T:0.32
Consensus pattern (73 bp):
GACACGCTGAGATATTTTCAATTTCTGCTTTCAAAAATTCAACTCATACTGCAAGAAGTGAGTTG
AGCCTCAA
Found at i:32958252 original size:148 final size:148
Alignment explanation
Indices: 32957915--32958390 Score: 528
Period size: 148 Copynumber: 3.2 Consensus size: 148
32957905 AGCCTTGACT
* *
32957915 GACACGTTGAGGTATTTTTAATTTCTGCCTTTAAAAAAAATCAACTCATATTGCGAGAGGTGAGT
1 GACACGTTGAGGTATTTTCAATTTCTGTCTTTAAAAAAAATCAACTCATATTGCGAGAGGTGAGT
* * * *
32957980 TGAGCCTCAGGACACGTTGAGGTAATTTCAATTTCTGTCTTTAAAAAAAAAATCAACTCATATTG
66 TGAGCCTCAGGACACGCTGAGATAATTTCAATTTCTG-CTTT---AAAAAAATCAACTCATACTA
* * *
32958045 CGAGAGGTGAGTTGAGCCTCAG
127 CAAGAAGTGAGTTGAGCCTCAA
*
32958067 GACACGTTGAGGTAATTTCAATTTCTGTCTTTAAAAAAAAAATCAACTCATATTGCGAGAGGTGA
1 GACACGTTGAGGTATTTTCAATTTCTGTCTTT--AAAAAAAATCAACTCATATTGCGAGAGGTGA
* ** ** * *
32958132 GTTGAGGCTTGGGACACGCTGAGATAATTTTTATTTCTG-TTT-CAAAATTCAACTCATACTACA
64 GTTGAGCCTCAGGACACGCTGAGATAATTTCAATTTCTGCTTTAAAAAAATCAACTCATACTACA
32958195 AGAAGTGAGTTGAGCCTCAA
129 AGAAGTGAGTTGAGCCTCAA
* * * * *
32958215 GACACGTTGAGGTATTTTCAATTTCTGTCTTTCAAAAAATTCAACTCATACTGCAAGAAGTGAGT
1 GACACGTTGAGGTATTTTCAATTTCTGTCTTTAAAAAAAATCAACTCATATTGCGAGAGGTGAGT
* * * * * * * * *
32958280 TGAGCCTCAAGACAAGTTGAGGTATTTTCAATTTCTGTCTTTCAAAAAAATCAGCTCATATTGCG
66 TGAGCCTCAGGACACGCTGAGATAATTTCAATTTCTG-CTTT-AAAAAAATCAACTCATACTACA
* *
32958345 AGAGGTGAGTTGAACCTCAA
129 AGAAGTGAGTTGAGCCTCAA
* * *
32958365 G--ACGCTGAGGTGTTTTCCATTTCTGT
1 GACACGTTGAGGTATTTTCAATTTCTGT
32958391 TCTTCAATTT
Statistics
Matches: 274, Mismatches: 44, Indels: 16
0.82 0.13 0.05
Matches are distributed among these distances:
146 55 0.20
148 90 0.33
150 34 0.12
152 32 0.12
154 63 0.23
ACGTcount: A:0.31, C:0.16, G:0.20, T:0.32
Consensus pattern (148 bp):
GACACGTTGAGGTATTTTCAATTTCTGTCTTTAAAAAAAATCAACTCATATTGCGAGAGGTGAGT
TGAGCCTCAGGACACGCTGAGATAATTTCAATTTCTGCTTTAAAAAAATCAACTCATACTACAAG
AAGTGAGTTGAGCCTCAA
Found at i:32958364 original size:75 final size:75
Alignment explanation
Indices: 32957868--32958390 Score: 619
Period size: 77 Copynumber: 7.0 Consensus size: 75
32957858 ATTTCTACGG
* * * *
32957868 TTCAAAAAAATCAGCTCATATTGCGAGAGGTAAGTTGAGCCTTGACTGACACGTTGAGGTATTTT
1 TTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCC-TCA-AGACACGTTGAGGTATTTT
* *
32957933 TAATTTCTGCCT
64 CAATTTCTGTCT
* * *
32957945 TTAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGTTGAGGTAATTTCA
1 TTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCA
32958010 ATTTCTGTCT
66 ATTTCTGTCT
* * *
32958020 TTAAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGTTGAGGTAATTT
1 TT--CAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTT
32958085 CAATTTCTGTCT
64 CAATTTCTGTCT
* * *** * *
32958097 TTAAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGGCTTGGGACACGCTGAGATAATTT
1 TT--CAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGT-ATTT
*
32958162 T-TATTTCTG--T
63 TCAATTTCTGTCT
* * * * *
32958172 TTC--AAAATTCAACTCATACTACAAGAAGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCA
1 TTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCA
32958235 ATTTCTGTCT
66 ATTTCTGTCT
* * * * *
32958245 TTCAAAAAATTCAACTCATACTGCAAGAAGTGAGTTGAGCCTCAAGACAAGTTGAGGTATTTTCA
1 TTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCA
32958310 ATTTCTGTCT
66 ATTTCTGTCT
* * * * *
32958320 TTCAAAAAAATCAGCTCATATTGCGAGAGGTGAGTTGAACCTCAAG--ACGCTGAGGTGTTTTCC
1 TTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCA
32958383 ATTTCTGT
66 ATTTCTGT
32958391 TCTTCAATTT
Statistics
Matches: 398, Mismatches: 40, Indels: 20
0.87 0.09 0.04
Matches are distributed among these distances:
70 5 0.01
71 49 0.12
73 25 0.06
75 140 0.35
76 2 0.01
77 173 0.43
78 4 0.01
ACGTcount: A:0.32, C:0.16, G:0.20, T:0.32
Consensus pattern (75 bp):
TTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCA
ATTTCTGTCT
Found at i:32959222 original size:18 final size:18
Alignment explanation
Indices: 32959199--32959252 Score: 57
Period size: 18 Copynumber: 3.3 Consensus size: 18
32959189 CCACCACCAA
32959199 CTCCACTAGCCACACTTG
1 CTCCACTAGCCACACTTG
*
32959217 CT-C-C-A-CCAC-C-TA
1 CTCCACTAGCCACACTTG
32959229 CTCCACTAGCCACACTTG
1 CTCCACTAGCCACACTTG
32959247 CTCCAC
1 CTCCAC
32959253 CACCACTTGT
Statistics
Matches: 28, Mismatches: 2, Indels: 12
0.67 0.05 0.29
Matches are distributed among these distances:
12 3 0.11
13 2 0.07
14 5 0.18
15 2 0.07
16 5 0.18
17 2 0.07
18 9 0.32
ACGTcount: A:0.22, C:0.50, G:0.07, T:0.20
Consensus pattern (18 bp):
CTCCACTAGCCACACTTG
Found at i:32959225 original size:30 final size:30
Alignment explanation
Indices: 32959189--32959257 Score: 129
Period size: 30 Copynumber: 2.3 Consensus size: 30
32959179 CTAGCCTTTG
32959189 CCACCACCAACTCCACTAGCCACACTTGCT
1 CCACCACCAACTCCACTAGCCACACTTGCT
*
32959219 CCACCACCTACTCCACTAGCCACACTTGCT
1 CCACCACCAACTCCACTAGCCACACTTGCT
32959249 CCACCACCA
1 CCACCACCA
32959258 CTTGTACCTA
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
30 37 1.00
ACGTcount: A:0.26, C:0.52, G:0.06, T:0.16
Consensus pattern (30 bp):
CCACCACCAACTCCACTAGCCACACTTGCT
Found at i:32969386 original size:23 final size:23
Alignment explanation
Indices: 32969344--32969411 Score: 68
Period size: 23 Copynumber: 3.0 Consensus size: 23
32969334 ATATACACAT
*
32969344 TAAAAATATAAAAGA-T-GAAAA
1 TAAAAATATAAAAAATTAGAAAA
*
32969365 TAAATATATAAAAAATTAGAAAA
1 TAAAAATATAAAAAATTAGAAAA
* * *
32969388 AAAAAATACATAAAATATAGAAAA
1 TAAAAATATAAAAAAT-TAGAAAA
32969412 ATATTTAAAT
Statistics
Matches: 38, Mismatches: 6, Indels: 3
0.81 0.13 0.06
Matches are distributed among these distances:
21 13 0.34
22 1 0.03
23 17 0.45
24 7 0.18
ACGTcount: A:0.72, C:0.01, G:0.06, T:0.21
Consensus pattern (23 bp):
TAAAAATATAAAAAATTAGAAAA
Found at i:32969402 original size:24 final size:25
Alignment explanation
Indices: 32969361--32969412 Score: 63
Period size: 24 Copynumber: 2.1 Consensus size: 25
32969351 ATAAAAGATG
* *
32969361 AAAATAAATATATAAAAA-ATTAGAA
1 AAAAAAAATACATAAAAATA-TAGAA
32969386 AAAAAAAATACAT-AAAATATAGAA
1 AAAAAAAATACATAAAAATATAGAA
32969410 AAA
1 AAA
32969413 TATTTAAATT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
24 12 0.50
25 12 0.50
ACGTcount: A:0.75, C:0.02, G:0.04, T:0.19
Consensus pattern (25 bp):
AAAAAAAATACATAAAAATATAGAA
Found at i:32969412 original size:23 final size:25
Alignment explanation
Indices: 32969361--32969412 Score: 70
Period size: 25 Copynumber: 2.1 Consensus size: 25
32969351 ATAAAAGATG
* *
32969361 AAAATAAATATATAAAAAATTAGAA
1 AAAAAAAATACATAAAAAATTAGAA
*
32969386 AAAAAAAATACATAAAATA-TAGAA
1 AAAAAAAATACATAAAAAATTAGAA
32969410 AAA
1 AAA
32969413 TATTTAAATT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
24 8 0.33
25 16 0.67
ACGTcount: A:0.75, C:0.02, G:0.04, T:0.19
Consensus pattern (25 bp):
AAAAAAAATACATAAAAAATTAGAA
Found at i:32969580 original size:15 final size:15
Alignment explanation
Indices: 32969557--32969587 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
32969547 TTATTTTTTT
32969557 TATAAAATTCTAAAA
1 TATAAAATTCTAAAA
*
32969572 TATATAATTCTAAAA
1 TATAAAATTCTAAAA
32969587 T
1 T
32969588 TCTAGAAAGG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.55, C:0.06, G:0.00, T:0.39
Consensus pattern (15 bp):
TATAAAATTCTAAAA
Found at i:32970118 original size:20 final size:18
Alignment explanation
Indices: 32970096--32970131 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
32970086 TTAAAAAGGA
32970096 AAAATAATATATAAAATTT
1 AAAATAAT-TATAAAATTT
*
32970115 AAAATTATTATAAAATT
1 AAAATAATTATAAAATT
32970132 ATATATATTT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 9 0.56
19 7 0.44
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (18 bp):
AAAATAATTATAAAATTT
Found at i:32970387 original size:18 final size:18
Alignment explanation
Indices: 32970364--32970400 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
32970354 TATTTGTTAT
*
32970364 TTTTCTAGATTATATATA
1 TTTTCTAAATTATATATA
*
32970382 TTTTCTAAATTTTATATA
1 TTTTCTAAATTATATATA
32970400 T
1 T
32970401 ATATATATTT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.32, C:0.05, G:0.03, T:0.59
Consensus pattern (18 bp):
TTTTCTAAATTATATATA
Found at i:32970403 original size:26 final size:27
Alignment explanation
Indices: 32970374--32970425 Score: 79
Period size: 27 Copynumber: 2.0 Consensus size: 27
32970364 TTTTCTAGAT
32970374 TATATATA-TTTTCTAAATTTTATATA
1 TATATATATTTTTCTAAATTTTATATA
* *
32970400 TATATATATTTTTTTATATTTTATAT
1 TATATATATTTTTCTAAATTTTATAT
32970426 TTTTTAATAT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
26 8 0.35
27 15 0.65
ACGTcount: A:0.35, C:0.02, G:0.00, T:0.63
Consensus pattern (27 bp):
TATATATATTTTTCTAAATTTTATATA
Found at i:32970430 original size:18 final size:20
Alignment explanation
Indices: 32970391--32970435 Score: 60
Period size: 17 Copynumber: 2.4 Consensus size: 20
32970381 ATTTTCTAAA
32970391 TTTTATATATATATATATTT
1 TTTTATATATATATATATTT
32970411 TTTTATAT-T-T-TATATTT
1 TTTTATATATATATATATTT
*
32970428 TTTAATAT
1 TTTTATAT
32970436 TTACAAATTT
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
17 14 0.58
18 1 0.04
19 1 0.04
20 8 0.33
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (20 bp):
TTTTATATATATATATATTT
Found at i:32972093 original size:6 final size:6
Alignment explanation
Indices: 32972082--32972112 Score: 62
Period size: 6 Copynumber: 5.2 Consensus size: 6
32972072 ATATAATTTA
32972082 GGGAGG GGGAGG GGGAGG GGGAGG GGGAGG G
1 GGGAGG GGGAGG GGGAGG GGGAGG GGGAGG G
32972113 ATGTGGGTGT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 25 1.00
ACGTcount: A:0.16, C:0.00, G:0.84, T:0.00
Consensus pattern (6 bp):
GGGAGG
Found at i:32975979 original size:21 final size:21
Alignment explanation
Indices: 32975936--32975979 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
32975926 GAAACTAAAA
*
32975936 AATTATAATCAAAGGACTTTT
1 AATTATAATCAAAAGACTTTT
*
32975957 AATTATAAT-AAAATACTTGTT
1 AATTATAATCAAAAGACTT-TT
32975978 AA
1 AA
32975980 AAAATCATTC
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
20 7 0.35
21 13 0.65
ACGTcount: A:0.48, C:0.07, G:0.07, T:0.39
Consensus pattern (21 bp):
AATTATAATCAAAAGACTTTT
Found at i:32978589 original size:5 final size:5
Alignment explanation
Indices: 32978579--32978603 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
32978569 GAGATATGAG
32978579 ATAGT ATAGT ATAGT ATAGT ATAGT
1 ATAGT ATAGT ATAGT ATAGT ATAGT
32978604 TACTTACATG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.40, C:0.00, G:0.20, T:0.40
Consensus pattern (5 bp):
ATAGT
Found at i:32993796 original size:3 final size:3
Alignment explanation
Indices: 32993788--32993816 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
32993778 ATAGAATGTT
32993788 TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
32993817 TGCAATTGGA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
TTA
Found at i:33000546 original size:24 final size:22
Alignment explanation
Indices: 33000520--33000570 Score: 66
Period size: 24 Copynumber: 2.2 Consensus size: 22
33000510 TTACATTTGT
* *
33000520 TTTCTTTTTCTTCTTTTTTGCTCT
1 TTTCTTTTGCTTCTCTTTT-CT-T
33000544 TTTCTTTTGCTTCTCTTTTCTT
1 TTTCTTTTGCTTCTCTTTTCTT
33000566 TTTCT
1 TTTCT
33000571 GCTTGGTTGT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
22 6 0.24
23 2 0.08
24 17 0.68
ACGTcount: A:0.00, C:0.22, G:0.04, T:0.75
Consensus pattern (22 bp):
TTTCTTTTGCTTCTCTTTTCTT
Found at i:33016132 original size:83 final size:83
Alignment explanation
Indices: 33015854--33016330 Score: 521
Period size: 83 Copynumber: 5.8 Consensus size: 83
33015844 AAAAAAGAAG
* ** ** *
33015854 TCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGGCACGCTGAGGTAACTTCAATTTCTGTTT
1 TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGCACACGCTGAGGTATTTTCAATTTCTGTTC
33015919 TTCAATTCTGTTTTCAAAAA
66 TT-AATTCTGTTTT-AAAAA
* * * * *
33015939 TCAACTCATATTGCGAGAAGTGAGTTAAGCCTCGGCTCACATGCTGAGGTATTTCCAATTTCTGT
1 TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAG--CACACGCTGAGGTATTTTCAATTTCTG-
*
33016004 TTTTTAATTCATGTTTTCAAAAA
63 TTCTTAATTC-TGTTTT-AAAAA
* *
33016027 CCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGCACACGCTGAGGTATTTTCAATCTCTGTTC
1 TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGCACACGCTGAGGTATTTTCAATTTCTGTTC
*
33016092 TTAATGTCTGTTTT-TAAA
66 TTAAT-TCTGTTTTAAAAA
*
33016110 TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAG-ACACGCTGAGGTATTTTCAATCTCTGTT
1 TCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-AGCACACGCTGAGGTATTTTCAATTTCTGTT
*
33016174 CTTAATGTCTGTTTT-TAAA
65 CTTAAT-TCTGTTTTAAAAA
* ** *
33016193 TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTAATTTCAATTTCTG--C
1 TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGCACACGCTGAGGTATTTTCAATTTCTGTTC
33016256 TT--TTC------AAAAA
66 TTAATTCTGTTTTAAAAA
* * * * *
33016266 TCAACTCGTATTGCGAGAGGTGAGTTGAGCCTCAGGTCACATGCCGAGGTATTTTTAAATTCTGT
1 TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCA-G-CACACGCTGAGGTATTTTCAATTTCTGT
33016331 CTTTCAAACT
Statistics
Matches: 349, Mismatches: 32, Indels: 31
0.85 0.08 0.08
Matches are distributed among these distances:
73 35 0.10
74 1 0.00
75 20 0.06
78 2 0.01
79 1 0.00
81 3 0.01
82 1 0.00
83 138 0.40
84 2 0.01
85 46 0.13
86 26 0.07
87 26 0.07
88 48 0.14
ACGTcount: A:0.26, C:0.19, G:0.21, T:0.34
Consensus pattern (83 bp):
TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGCACACGCTGAGGTATTTTCAATTTCTGTTC
TTAATTCTGTTTTAAAAA
Found at i:33020153 original size:46 final size:46
Alignment explanation
Indices: 33020101--33020506 Score: 580
Period size: 46 Copynumber: 8.8 Consensus size: 46
33020091 AGTGTGCTCT
33020101 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
33020147 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
*
33020193 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATATCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * *
33020239 GTGATATGGAATGTGTAGGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* *
33020285 TTGATATGAAATGTGTAAGACCGTGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* **
33020331 GTGATATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* *
33020377 CTGACATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* *** **
33020423 ATGACGGGAAAATGAATAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATG-AAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * * * * *
33020470 ATGACA-GAAAACGAGTAAAACCATAGTTGAAAGATAC
1 CTGATATG-AAATGTGTAAGACCATGGTTGAAAGATAC
33020507 TATGACATCA
Statistics
Matches: 334, Mismatches: 25, Indels: 2
0.93 0.07 0.01
Matches are distributed among these distances:
46 292 0.87
47 42 0.13
ACGTcount: A:0.39, C:0.14, G:0.25, T:0.22
Consensus pattern (46 bp):
CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
Found at i:33021934 original size:21 final size:22
Alignment explanation
Indices: 33021866--33021935 Score: 54
Period size: 21 Copynumber: 3.2 Consensus size: 22
33021856 ATTATGTATA
* *
33021866 TATTTTAAATATTATATACTAAG
1 TATTTTAAATATTAT-TAGTTAG
* *** *
33021889 TATTTTTAATATCCCTA-TTAT
1 TATTTTAAATATTATTAGTTAG
33021910 TATTTTAAATATTATTAGTTA-
1 TATTTTAAATATTATTAGTTAG
33021931 TATTT
1 TATTT
33021936 CTGTATATAT
Statistics
Matches: 36, Mismatches: 10, Indels: 4
0.72 0.20 0.08
Matches are distributed among these distances:
21 20 0.56
22 5 0.14
23 11 0.31
ACGTcount: A:0.36, C:0.06, G:0.03, T:0.56
Consensus pattern (22 bp):
TATTTTAAATATTATTAGTTAG
Found at i:33033438 original size:24 final size:23
Alignment explanation
Indices: 33033411--33033464 Score: 72
Period size: 24 Copynumber: 2.3 Consensus size: 23
33033401 ATGCATATTA
*
33033411 AATATTTGTTGGTGGATGATAAAC
1 AATATTT-TTGGTGAATGATAAAC
*
33033435 AATACTTTTTGGTGAATGATAAAT
1 AATA-TTTTTGGTGAATGATAAAC
33033459 AATATT
1 AATATT
33033465 CCAGGTCAGT
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
23 2 0.07
24 22 0.81
25 3 0.11
ACGTcount: A:0.37, C:0.04, G:0.19, T:0.41
Consensus pattern (23 bp):
AATATTTTTGGTGAATGATAAAC
Found at i:33038876 original size:20 final size:20
Alignment explanation
Indices: 33038801--33038867 Score: 64
Period size: 22 Copynumber: 3.2 Consensus size: 20
33038791 GTCCCTAGGG
*
33038801 CACATGGGCGTGTG-CCTTAGC
1 CACACGGGCGTGTGCCCTT--C
* *
33038822 CACACGGGCATATGCTTCCTTC
1 CACACGGGCGTGTGC--CCTTC
33038844 CACACGGGCGTGTGCCCTTC
1 CACACGGGCGTGTGCCCTTC
33038864 CACA
1 CACA
33038868 TGGGTGTGTT
Statistics
Matches: 38, Mismatches: 5, Indels: 7
0.76 0.10 0.14
Matches are distributed among these distances:
20 9 0.24
21 11 0.29
22 14 0.37
24 4 0.11
ACGTcount: A:0.16, C:0.36, G:0.25, T:0.22
Consensus pattern (20 bp):
CACACGGGCGTGTGCCCTTC
Found at i:33039184 original size:14 final size:15
Alignment explanation
Indices: 33039158--33039191 Score: 54
Period size: 14 Copynumber: 2.4 Consensus size: 15
33039148 TTTATGATTC
33039158 TGAGTGATTTGTGTG
1 TGAGTGATTTGTGTG
33039173 TGAGTG-TTTGTGTG
1 TGAGTGATTTGTGTG
33039187 T-AGTG
1 TGAGTG
33039192 CGCATTATAT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 4 0.21
14 9 0.47
15 6 0.32
ACGTcount: A:0.12, C:0.00, G:0.41, T:0.47
Consensus pattern (15 bp):
TGAGTGATTTGTGTG
Found at i:33040477 original size:13 final size:13
Alignment explanation
Indices: 33040459--33040483 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
33040449 CATGTGGGCC
33040459 CACACGGGCAACT
1 CACACGGGCAACT
33040472 CACACGGGCAAC
1 CACACGGGCAAC
33040484 CCACTTGGGC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.40, G:0.24, T:0.04
Consensus pattern (13 bp):
CACACGGGCAACT
Found at i:33051642 original size:53 final size:53
Alignment explanation
Indices: 33051575--33051680 Score: 194
Period size: 53 Copynumber: 2.0 Consensus size: 53
33051565 GGAAGCACCT
33051575 CTACCACTTCAAATTCAACTTTGATTAGACGAATTCAGAATATTTTATTACAA
1 CTACCACTTCAAATTCAACTTTGATTAGACGAATTCAGAATATTTTATTACAA
* *
33051628 CTACCACTTTAAATTCAACTTTGATTATACGAATTCAGAATATTTTATTACAA
1 CTACCACTTCAAATTCAACTTTGATTAGACGAATTCAGAATATTTTATTACAA
33051681 GAAGAACAGT
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
53 51 1.00
ACGTcount: A:0.38, C:0.18, G:0.07, T:0.38
Consensus pattern (53 bp):
CTACCACTTCAAATTCAACTTTGATTAGACGAATTCAGAATATTTTATTACAA
Found at i:33064614 original size:46 final size:46
Alignment explanation
Indices: 33064547--33064671 Score: 207
Period size: 46 Copynumber: 2.7 Consensus size: 46
33064537 CTTGCACCCT
* * *
33064547 AAGTGCCAATACATAGCTGAAGCTATCTCAATGAATTTCGCACACG
1 AAGTGCCAATACATAGCTGAAGCTATCTCAATGAATCTCCCACACA
33064593 AAGTGCCAATACATAGCTGAAGCTATCTCAATGAATCTCCCACACA
1 AAGTGCCAATACATAGCTGAAGCTATCTCAATGAATCTCCCACACA
33064639 AAGTGCCAATACATAG-TCGAAGCTATCTCAATG
1 AAGTGCCAATACATAGCT-GAAGCTATCTCAATG
33064672 GTGCTTACTC
Statistics
Matches: 75, Mismatches: 3, Indels: 2
0.94 0.04 0.03
Matches are distributed among these distances:
45 1 0.01
46 74 0.99
ACGTcount: A:0.36, C:0.25, G:0.16, T:0.23
Consensus pattern (46 bp):
AAGTGCCAATACATAGCTGAAGCTATCTCAATGAATCTCCCACACA
Found at i:33069560 original size:33 final size:34
Alignment explanation
Indices: 33069493--33069568 Score: 93
Period size: 33 Copynumber: 2.3 Consensus size: 34
33069483 TTTTATGAAA
* *
33069493 ATAATATTTTTAAACTTTTTTATATATATTATAT
1 ATAATATTTTTAAACTTTTTAATATATATAATAT
* *
33069527 ATGATATTTTTATA-TTTTTAATCA-ATATAATAT
1 ATAATATTTTTAAACTTTTTAAT-ATATATAATAT
33069560 ATAATATTT
1 ATAATATTT
33069569 AAAAATATAT
Statistics
Matches: 36, Mismatches: 5, Indels: 3
0.82 0.11 0.07
Matches are distributed among these distances:
33 23 0.64
34 13 0.36
ACGTcount: A:0.39, C:0.03, G:0.01, T:0.57
Consensus pattern (34 bp):
ATAATATTTTTAAACTTTTTAATATATATAATAT
Found at i:33069882 original size:20 final size:20
Alignment explanation
Indices: 33069859--33069904 Score: 58
Period size: 20 Copynumber: 2.3 Consensus size: 20
33069849 TTATAAATTT
33069859 TAAAAAATCAAAATAATA-TA
1 TAAAAAATCAAAA-AATATTA
* *
33069879 TAAAAATTGAAAAAATATTA
1 TAAAAAATCAAAAAATATTA
33069899 TAAAAA
1 TAAAAA
33069905 TTTAGAAGGT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
19 4 0.17
20 19 0.83
ACGTcount: A:0.70, C:0.02, G:0.02, T:0.26
Consensus pattern (20 bp):
TAAAAAATCAAAAAATATTA
Found at i:33069905 original size:20 final size:20
Alignment explanation
Indices: 33069868--33069906 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 20
33069858 TTAAAAAATC
33069868 AAAATAATATATAAAAATTG
1 AAAATAATATATAAAAATTG
33069888 AAAA-AATATTATAAAAATT
1 AAAATAATA-TATAAAAATT
33069907 TAGAAGGTAT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 4 0.22
20 14 0.78
ACGTcount: A:0.67, C:0.00, G:0.03, T:0.31
Consensus pattern (20 bp):
AAAATAATATATAAAAATTG
Found at i:33073226 original size:25 final size:25
Alignment explanation
Indices: 33073197--33073244 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
33073187 TTATAACATG
* * *
33073197 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
33073222 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
33073245 GTTTATGTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:33073328 original size:11 final size:11
Alignment explanation
Indices: 33073292--33073347 Score: 57
Period size: 11 Copynumber: 5.5 Consensus size: 11
33073282 CATGGTATGT
33073292 ATGATATGCAC
1 ATGATATGCAC
* *
33073303 ATGACATG--T
1 ATGATATGCAC
33073312 ATGATATGCAC
1 ATGATATGCAC
*
33073323 ATGATATG--T
1 ATGATATGCAC
33073332 ATGATATGCAC
1 ATGATATGCAC
33073343 ATGAT
1 ATGAT
33073348 GTAATCATAA
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
9 15 0.43
11 20 0.57
ACGTcount: A:0.36, C:0.12, G:0.20, T:0.32
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:33073347 original size:20 final size:20
Alignment explanation
Indices: 33073281--33073347 Score: 116
Period size: 20 Copynumber: 3.4 Consensus size: 20
33073271 ATTTTGATAG
*
33073281 ACATGGTATGTATGATATGC
1 ACATGATATGTATGATATGC
*
33073301 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
33073321 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
33073341 ACATGAT
1 ACATGAT
33073348 GTAATCATAA
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 44 1.00
ACGTcount: A:0.34, C:0.12, G:0.21, T:0.33
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:33077940 original size:25 final size:26
Alignment explanation
Indices: 33077875--33077944 Score: 115
Period size: 26 Copynumber: 2.7 Consensus size: 26
33077865 TGTTAGCCCT
*
33077875 AATACCTAGAGGGTCGTGGGCAGTCC
1 AATACCTTGAGGGTCGTGGGCAGTCC
*
33077901 AATACCTTGAAGGTCGTGGGCAGTCC
1 AATACCTTGAGGGTCGTGGGCAGTCC
33077927 AATA-CTTGAGGGTCGTGG
1 AATACCTTGAGGGTCGTGG
33077945 AAAATGCTGA
Statistics
Matches: 41, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
25 13 0.32
26 28 0.68
ACGTcount: A:0.23, C:0.20, G:0.34, T:0.23
Consensus pattern (26 bp):
AATACCTTGAGGGTCGTGGGCAGTCC
Found at i:33082006 original size:2 final size:2
Alignment explanation
Indices: 33081999--33082023 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
33081989 CAATTCCCTT
33081999 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
33082024 TACAACAGCT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:33088066 original size:17 final size:18
Alignment explanation
Indices: 33088040--33088073 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
33088030 TGTTATCACA
*
33088040 ATAAACATAATAATTTTC
1 ATAAACATAAAAATTTTC
33088058 ATAAA-ATAAAAATTTT
1 ATAAACATAAAAATTTT
33088074 AAAATATACT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 10 0.67
18 5 0.33
ACGTcount: A:0.56, C:0.06, G:0.00, T:0.38
Consensus pattern (18 bp):
ATAAACATAAAAATTTTC
Found at i:33090989 original size:13 final size:13
Alignment explanation
Indices: 33090971--33090997 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
33090961 TATGGACTGA
33090971 TGGACTTTTGGTT
1 TGGACTTTTGGTT
33090984 TGGACTTTTGGTT
1 TGGACTTTTGGTT
33090997 T
1 T
33090998 TTTTTTTTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.07, C:0.07, G:0.30, T:0.56
Consensus pattern (13 bp):
TGGACTTTTGGTT
Found at i:33091316 original size:23 final size:21
Alignment explanation
Indices: 33091274--33091325 Score: 63
Period size: 20 Copynumber: 2.6 Consensus size: 21
33091264 TATTATTTTT
33091274 AATATATAATAATTAAATAAA
1 AATATATAATAATTAAATAAA
* * *
33091295 AATAT-TAATAATTATATTAT
1 AATATATAATAATTAAATAAA
33091315 AA-ATATAATAA
1 AATATATAATAA
33091326 GCACACAAAT
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
19 2 0.07
20 20 0.74
21 5 0.19
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (21 bp):
AATATATAATAATTAAATAAA
Found at i:33091997 original size:3 final size:3
Alignment explanation
Indices: 33091989--33092015 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
33091979 AACTTAAAAC
33091989 ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA
33092016 GTCTGAAAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:33092130 original size:17 final size:17
Alignment explanation
Indices: 33092108--33092140 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
33092098 TTCAATGAGA
33092108 AAATTATGAAAA-AAATC
1 AAATTAT-AAAATAAATC
33092125 AAATTATAAAATAAAT
1 AAATTATAAAATAAAT
33092141 ACAATATGTT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 4 0.27
17 11 0.73
ACGTcount: A:0.67, C:0.03, G:0.03, T:0.27
Consensus pattern (17 bp):
AAATTATAAAATAAATC
Found at i:33092961 original size:31 final size:31
Alignment explanation
Indices: 33092923--33092983 Score: 122
Period size: 31 Copynumber: 2.0 Consensus size: 31
33092913 TCACATTCCT
33092923 AAGTAAATGAGTGAATAAAATTCATCCATCC
1 AAGTAAATGAGTGAATAAAATTCATCCATCC
33092954 AAGTAAATGAGTGAATAAAATTCATCCATC
1 AAGTAAATGAGTGAATAAAATTCATCCATC
33092984 AACCTAAAGA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.46, C:0.15, G:0.13, T:0.26
Consensus pattern (31 bp):
AAGTAAATGAGTGAATAAAATTCATCCATCC
Found at i:33093740 original size:31 final size:31
Alignment explanation
Indices: 33093705--33093766 Score: 124
Period size: 31 Copynumber: 2.0 Consensus size: 31
33093695 ATAAATAACT
33093705 TCAAATTTGAATGTCCAATTGGCCTGATATA
1 TCAAATTTGAATGTCCAATTGGCCTGATATA
33093736 TCAAATTTGAATGTCCAATTGGCCTGATATA
1 TCAAATTTGAATGTCCAATTGGCCTGATATA
33093767 CTTACATTAT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.35
Consensus pattern (31 bp):
TCAAATTTGAATGTCCAATTGGCCTGATATA
Found at i:33098357 original size:6 final size:6
Alignment explanation
Indices: 33098346--33098372 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
33098336 TTGTGAGTGA
33098346 AAATAG AAATAG AAATAG AAATAG AAA
1 AAATAG AAATAG AAATAG AAATAG AAA
33098373 AAGTAAATTT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.70, C:0.00, G:0.15, T:0.15
Consensus pattern (6 bp):
AAATAG
Found at i:33101146 original size:16 final size:16
Alignment explanation
Indices: 33101113--33101146 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
33101103 AAACACTGTT
* *
33101113 AACATTAATGGGAGAC
1 AACATTAATGGCAAAC
33101129 AACATTAATGGCAAAC
1 AACATTAATGGCAAAC
33101145 AA
1 AA
33101147 TACAAAGTGG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.50, C:0.15, G:0.18, T:0.18
Consensus pattern (16 bp):
AACATTAATGGCAAAC
Found at i:33103973 original size:21 final size:21
Alignment explanation
Indices: 33103947--33103987 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
33103937 AGACGAGCAA
* *
33103947 TACTCCACAGCAGGTGGAGTG
1 TACTCCAAAACAGGTGGAGTG
33103968 TACTCCAAAACAGGTGGAGT
1 TACTCCAAAACAGGTGGAGT
33103988 TTGAGCAGAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.29, C:0.22, G:0.29, T:0.20
Consensus pattern (21 bp):
TACTCCAAAACAGGTGGAGTG
Found at i:33105926 original size:16 final size:16
Alignment explanation
Indices: 33105893--33105926 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
33105883 GGAGATTGTT
* *
33105893 AACATTAATGGGAGAC
1 AACATTAATGGCAAAC
33105909 AACATTAATGGCAAAC
1 AACATTAATGGCAAAC
33105925 AA
1 AA
33105927 TACAAAGTGG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.50, C:0.15, G:0.18, T:0.18
Consensus pattern (16 bp):
AACATTAATGGCAAAC
Found at i:33111923 original size:31 final size:31
Alignment explanation
Indices: 33111881--33111943 Score: 108
Period size: 31 Copynumber: 2.0 Consensus size: 31
33111871 ATCTTAGTAC
*
33111881 AATGTTGAAATTTGAAAAAAACAAAATTAGA
1 AATGTTAAAATTTGAAAAAAACAAAATTAGA
*
33111912 AATGTTAAAATTTGAAAAAAAGAAAATTAGA
1 AATGTTAAAATTTGAAAAAAACAAAATTAGA
33111943 A
1 A
33111944 GAAAAATACT
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.60, C:0.02, G:0.13, T:0.25
Consensus pattern (31 bp):
AATGTTAAAATTTGAAAAAAACAAAATTAGA
Found at i:33112360 original size:34 final size:34
Alignment explanation
Indices: 33112320--33112393 Score: 105
Period size: 34 Copynumber: 2.2 Consensus size: 34
33112310 CTTAATTGAC
33112320 CATGTTCACAAACATTAAACGAACGTGTCTT-AAA
1 CATGTTCACAAACATTAAACGAACGTGT-TTCAAA
* * *
33112354 CATGTTCACGAACATTAAAGGAATGTGTTTCAAA
1 CATGTTCACAAACATTAAACGAACGTGTTTCAAA
33112388 CATGTT
1 CATGTT
33112394 AATGAACATA
Statistics
Matches: 36, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
33 2 0.06
34 34 0.94
ACGTcount: A:0.38, C:0.18, G:0.15, T:0.30
Consensus pattern (34 bp):
CATGTTCACAAACATTAAACGAACGTGTTTCAAA
Found at i:33112401 original size:34 final size:34
Alignment explanation
Indices: 33112320--33112402 Score: 96
Period size: 34 Copynumber: 2.4 Consensus size: 34
33112310 CTTAATTGAC
* *
33112320 CATGTTCACAAACATTAAACGAACGTGTCTTAAA
1 CATGTTAACGAACATTAAACGAACGTGTCTTAAA
* * *
33112354 CATGTTCACGAACATTAAAGGAATGTGT-TTCAAA
1 CATGTTAACGAACATTAAACGAACGTGTCTT-AAA
*
33112388 CATGTTAATGAACAT
1 CATGTTAACGAACAT
33112403 ATAATTGAAC
Statistics
Matches: 43, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
33 2 0.05
34 41 0.95
ACGTcount: A:0.40, C:0.17, G:0.14, T:0.29
Consensus pattern (34 bp):
CATGTTAACGAACATTAAACGAACGTGTCTTAAA
Found at i:33112413 original size:24 final size:24
Alignment explanation
Indices: 33112386--33112441 Score: 94
Period size: 24 Copynumber: 2.3 Consensus size: 24
33112376 ATGTGTTTCA
33112386 AACATGTTAATGAACATATAATTG
1 AACATGTTAATGAACATATAATTG
*
33112410 AACATGTTCATGAACATATAATTG
1 AACATGTTAATGAACATATAATTG
*
33112434 AATATGTT
1 AACATGTT
33112442 TACGAACAAA
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
24 30 1.00
ACGTcount: A:0.43, C:0.09, G:0.12, T:0.36
Consensus pattern (24 bp):
AACATGTTAATGAACATATAATTG
Found at i:33112448 original size:24 final size:24
Alignment explanation
Indices: 33112386--33112449 Score: 83
Period size: 24 Copynumber: 2.7 Consensus size: 24
33112376 ATGTGTTTCA
* *
33112386 AACATGTTAATGAACATATAATTG
1 AACATGTTCACGAACATATAATTG
*
33112410 AACATGTTCATGAACATATAATTG
1 AACATGTTCACGAACATATAATTG
* *
33112434 AATATGTTTACGAACA
1 AACATGTTCACGAACA
33112450 AAACTGTACA
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
24 36 1.00
ACGTcount: A:0.44, C:0.11, G:0.12, T:0.33
Consensus pattern (24 bp):
AACATGTTCACGAACATATAATTG
Found at i:33117407 original size:14 final size:14
Alignment explanation
Indices: 33117388--33117421 Score: 68
Period size: 14 Copynumber: 2.4 Consensus size: 14
33117378 AAACTTGAAT
33117388 TAAAGAGAAAGTTG
1 TAAAGAGAAAGTTG
33117402 TAAAGAGAAAGTTG
1 TAAAGAGAAAGTTG
33117416 TAAAGA
1 TAAAGA
33117422 AAAAATTCTC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.53, C:0.00, G:0.26, T:0.21
Consensus pattern (14 bp):
TAAAGAGAAAGTTG
Found at i:33124080 original size:16 final size:17
Alignment explanation
Indices: 33124054--33124087 Score: 61
Period size: 16 Copynumber: 2.1 Consensus size: 17
33124044 GCAAATAATG
33124054 AACATGACAATAAAATT
1 AACATGACAATAAAATT
33124071 AACA-GACAATAAAATT
1 AACATGACAATAAAATT
33124087 A
1 A
33124088 TGCAAGATTA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 13 0.76
17 4 0.24
ACGTcount: A:0.62, C:0.12, G:0.06, T:0.21
Consensus pattern (17 bp):
AACATGACAATAAAATT
Found at i:33124691 original size:21 final size:24
Alignment explanation
Indices: 33124646--33124702 Score: 75
Period size: 23 Copynumber: 2.5 Consensus size: 24
33124636 ATAACACCAC
*
33124646 ATAAATATGTACATAGGACAATAT
1 ATAAATATATACATAGGACAATAT
33124670 A-AAATATATACAT-GGA-AATAT
1 ATAAATATATACATAGGACAATAT
33124691 ATAAATAATATA
1 ATAAAT-ATATA
33124703 TAACTACTAA
Statistics
Matches: 30, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
21 6 0.20
22 7 0.23
23 16 0.53
24 1 0.03
ACGTcount: A:0.56, C:0.05, G:0.09, T:0.30
Consensus pattern (24 bp):
ATAAATATATACATAGGACAATAT
Found at i:33124818 original size:21 final size:21
Alignment explanation
Indices: 33124785--33124858 Score: 73
Period size: 21 Copynumber: 3.5 Consensus size: 21
33124775 AATATGAAAA
33124785 AAAATATATATAATATAATATT
1 AAAATATA-ATAATATAATATT
* *
33124807 AAAATATAATAATACAACATT
1 AAAATATAATAATATAATATT
*
33124828 AAAA-AAAAT-ATGATACATA-T
1 AAAATATAATAAT-ATA-ATATT
33124848 AAAATATAATA
1 AAAATATAATA
33124859 TTTAAAGTAT
Statistics
Matches: 42, Mismatches: 6, Indels: 8
0.75 0.11 0.14
Matches are distributed among these distances:
19 2 0.05
20 11 0.26
21 21 0.50
22 8 0.19
ACGTcount: A:0.64, C:0.04, G:0.01, T:0.31
Consensus pattern (21 bp):
AAAATATAATAATATAATATT
Found at i:33125472 original size:16 final size:16
Alignment explanation
Indices: 33125453--33125500 Score: 69
Period size: 16 Copynumber: 3.0 Consensus size: 16
33125443 AAGAAAAAAA
*
33125453 AGAAAAAAGAGAAGGG
1 AGAAAAGAGAGAAGGG
*
33125469 AGAAAAGAGAGAGGGG
1 AGAAAAGAGAGAAGGG
*
33125485 AGAAAGGAGAGAAGGG
1 AGAAAAGAGAGAAGGG
33125501 TTCCGGCCGG
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
16 28 1.00
ACGTcount: A:0.54, C:0.00, G:0.46, T:0.00
Consensus pattern (16 bp):
AGAAAAGAGAGAAGGG
Found at i:33126332 original size:5 final size:5
Alignment explanation
Indices: 33126322--33126393 Score: 64
Period size: 5 Copynumber: 14.8 Consensus size: 5
33126312 TGTTAAAAAA
* *
33126322 ATATT ATATT ATAGTA ATGATT ATGTT -T-TT ATATT ATATT ATCATT
1 ATATT ATATT ATA-TT AT-ATT ATATT ATATT ATATT ATATT AT-ATT
33126368 A-A-T ATATT ATATT ATATT ATA-T ATAT
1 ATATT ATATT ATATT ATATT ATATT ATAT
33126394 ACATAAAACA
Statistics
Matches: 56, Mismatches: 3, Indels: 16
0.75 0.04 0.21
Matches are distributed among these distances:
3 4 0.07
4 8 0.14
5 33 0.59
6 10 0.18
7 1 0.02
ACGTcount: A:0.39, C:0.01, G:0.04, T:0.56
Consensus pattern (5 bp):
ATATT
Found at i:33126375 original size:19 final size:19
Alignment explanation
Indices: 33126351--33126393 Score: 70
Period size: 19 Copynumber: 2.3 Consensus size: 19
33126341 ATTATGTTTT
33126351 TATATTATATTATCATTA-A
1 TATATTATATTAT-ATTATA
33126370 TATATTATATTATATTATA
1 TATATTATATTATATTATA
33126389 TATAT
1 TATAT
33126394 ACATAAAACA
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
18 4 0.17
19 19 0.83
ACGTcount: A:0.42, C:0.02, G:0.00, T:0.56
Consensus pattern (19 bp):
TATATTATATTATATTATA
Found at i:33126425 original size:17 final size:17
Alignment explanation
Indices: 33126403--33126436 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
33126393 TACATAAAAC
*
33126403 AAAAGAAAGAATAGAAA
1 AAAAGAAAGAAAAGAAA
33126420 AAAAGAAAGAAAAGAAA
1 AAAAGAAAGAAAAGAAA
33126437 CAGAATAGAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.79, C:0.00, G:0.18, T:0.03
Consensus pattern (17 bp):
AAAAGAAAGAAAAGAAA
Found at i:33126432 original size:9 final size:9
Alignment explanation
Indices: 33126403--33126436 Score: 52
Period size: 9 Copynumber: 3.9 Consensus size: 9
33126393 TACATAAAAC
33126403 AAAAGAAAG
1 AAAAGAAAG
*
33126412 AATAGAAA-
1 AAAAGAAAG
33126420 AAAAGAAAG
1 AAAAGAAAG
33126429 AAAAGAAA
1 AAAAGAAA
33126437 CAGAATAGAA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
8 7 0.32
9 15 0.68
ACGTcount: A:0.79, C:0.00, G:0.18, T:0.03
Consensus pattern (9 bp):
AAAAGAAAG
Found at i:33127065 original size:29 final size:30
Alignment explanation
Indices: 33127006--33127063 Score: 82
Period size: 30 Copynumber: 1.9 Consensus size: 30
33126996 TCCGAGCCTT
*
33127006 GGGGCAAAAATGTAATTATGTAAAAGTTTA
1 GGGGCAAAAATGTAATTATGAAAAAGTTTA
*
33127036 GGGGCAAAATTGTAATTTAT-AAAAAGTT
1 GGGGCAAAAATGTAA-TTATGAAAAAGTT
33127064 AGAGTCGAGG
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
30 21 0.84
31 4 0.16
ACGTcount: A:0.43, C:0.03, G:0.22, T:0.31
Consensus pattern (30 bp):
GGGGCAAAAATGTAATTATGAAAAAGTTTA
Found at i:33127455 original size:46 final size:44
Alignment explanation
Indices: 33127403--33127488 Score: 136
Period size: 46 Copynumber: 1.9 Consensus size: 44
33127393 AGAACAGAAA
*
33127403 TGAGCCATGTAAGTCCATATTAGAAATATGGCTTTGGAGACAAGAT
1 TGAGCCATGTAAGTCCATATT--AAATATGGCATTGGAGACAAGAT
*
33127449 TGAGCCATGTAAGTCCATATTATATATGGCATTGGAGACA
1 TGAGCCATGTAAGTCCATATTAAATATGGCATTGGAGACA
33127489 GGAATAATTC
Statistics
Matches: 38, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
44 17 0.45
46 21 0.55
ACGTcount: A:0.34, C:0.14, G:0.23, T:0.29
Consensus pattern (44 bp):
TGAGCCATGTAAGTCCATATTAAATATGGCATTGGAGACAAGAT
Found at i:33127502 original size:44 final size:45
Alignment explanation
Indices: 33127405--33127529 Score: 135
Period size: 44 Copynumber: 2.8 Consensus size: 45
33127395 AACAGAAATG
* * *
33127405 AGCCATGTAAGTCCATATTAGAAATATGGCTTTGGAGACAAGATTG
1 AGCCATGTAAGTCCATATTA-AAATATGGCATTGGAGACAAGAATA
* *
33127451 AGCCATGTAAGTCCATATT-ATATATGGCATTGGAGACAGGAATA
1 AGCCATGTAAGTCCATATTAAAATATGGCATTGGAGACAAGAATA
** * * *
33127495 ATTCATGTAAGTCCATGTCAAAGACATGGCATTGG
1 AGCCATGTAAGTCCATATTAAA-ATATGGCATTGG
33127530 CAGGGTATTG
Statistics
Matches: 66, Mismatches: 11, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
44 35 0.53
45 1 0.02
46 30 0.45
ACGTcount: A:0.34, C:0.14, G:0.23, T:0.28
Consensus pattern (45 bp):
AGCCATGTAAGTCCATATTAAAATATGGCATTGGAGACAAGAATA
Found at i:33133193 original size:29 final size:30
Alignment explanation
Indices: 33133134--33133191 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
33133124 TCCGAGCCTT
*
33133134 GGGGCAAAAATGTAATTATGTAAAAGTTTA
1 GGGGCAAAAATGTAATTATGAAAAAGTTTA
* *
33133164 GGGGCAAAATTGTAATTTTGAAAAAGTT
1 GGGGCAAAAATGTAATTATGAAAAAGTT
33133192 AGAGTCGAGG
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.41, C:0.03, G:0.24, T:0.31
Consensus pattern (30 bp):
GGGGCAAAAATGTAATTATGAAAAAGTTTA
Found at i:33133421 original size:13 final size:13
Alignment explanation
Indices: 33133403--33133434 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
33133393 TTTCCAGCAA
33133403 TTATGAATTTATT
1 TTATGAATTTATT
33133416 TTATGAATTTATT
1 TTATGAATTTATT
*
33133429 TGATGA
1 TTATGA
33133435 TGATCCAAGC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.31, C:0.00, G:0.12, T:0.56
Consensus pattern (13 bp):
TTATGAATTTATT
Found at i:33133609 original size:50 final size:50
Alignment explanation
Indices: 33133529--33133713 Score: 361
Period size: 50 Copynumber: 3.7 Consensus size: 50
33133519 ATTTGGGTAA
*
33133529 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
33133579 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
33133629 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
33133679 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGC
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGC
33133714 TTTGGCATGT
Statistics
Matches: 134, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
50 134 1.00
ACGTcount: A:0.26, C:0.24, G:0.33, T:0.17
Consensus pattern (50 bp):
AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
Found at i:33135961 original size:13 final size:13
Alignment explanation
Indices: 33135933--33135967 Score: 52
Period size: 14 Copynumber: 2.6 Consensus size: 13
33135923 TGAGTTGATT
33135933 TTTGAAAACAGAA
1 TTTGAAAACAGAA
*
33135946 TTTGCAAAACAGAT
1 TTTG-AAAACAGAA
33135960 TTTGAAAA
1 TTTGAAAA
33135968 TACCTCGGCA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
13 8 0.40
14 12 0.60
ACGTcount: A:0.49, C:0.09, G:0.14, T:0.29
Consensus pattern (13 bp):
TTTGAAAACAGAA
Found at i:33136257 original size:89 final size:87
Alignment explanation
Indices: 33135902--33136306 Score: 474
Period size: 87 Copynumber: 4.6 Consensus size: 87
33135892 TGAGCAAAGA
* * * **
33135902 CTCAACTCACTTCTCGCAATATGAGTTGATTTTTGAAAA-CAGAATTTGCAAAACAGATTTTGAA
1 CTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAGCAGAAATTGAAAAACAGAAATTGAA
* * *
33135966 AATACCTCGGCATGTGACTTGAGG
66 AATACCTCAGC--GTGCCCTGAGG
* * ** *
33135990 CTCAACTCACCTCTCGTAATATGAGTTGATTTTTGAAAAGCATAAATTGAAAAACATTAATTGAG
1 CTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAGCAGAAATTGAAAAACAGAAATTGAA
*
33136055 AATAACTCAGCGTGTCCC-GAGG
66 AATACCTCAGCGTG-CCCTGAGG
* * * *
33136077 CTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACATAAATTGAAAAACGGAAATCGAA
1 CTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAGCAGAAATTGAAAAACAGAAATTGAA
*
33136142 AATACCTCAGCGTGTCCTGAGG
66 AATACCTCAGCGTGCCCTGAGG
* * * * *
33136164 CTCAACTCATCTCTCGTAATATGAGTTGATTTTTTTGAAAAGCAGAAATCGGAAAGCAGAAATTG
1 CTCAACTCACCTCTCGCAATATGAGTTGA--TTTTTGAAAAGCAGAAATTGAAAAACAGAAATTG
* *
33136229 AAACTACCTCAGTGTGCCCTGAGG
64 AAAATACCTCAGCGTGCCCTGAGG
* *
33136253 CTCAACTCACCTCTCACAATTATGAGTTGATTTTTGACAAA-CAGCAATTGAAAA
1 CTCAACTCACCTCTCGCAA-TATGAGTTGATTTTTGA-AAAGCAGAAATTGAAAA
33136307 TACCTCAGCG
Statistics
Matches: 269, Mismatches: 41, Indels: 14
0.83 0.13 0.04
Matches are distributed among these distances:
86 2 0.01
87 109 0.41
88 55 0.20
89 93 0.35
90 10 0.04
ACGTcount: A:0.35, C:0.20, G:0.17, T:0.28
Consensus pattern (87 bp):
CTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAGCAGAAATTGAAAAACAGAAATTGAA
AATACCTCAGCGTGCCCTGAGG
Found at i:33136262 original size:176 final size:175
Alignment explanation
Indices: 33135902--33136306 Score: 521
Period size: 176 Copynumber: 2.3 Consensus size: 175
33135892 TGAGCAAAGA
* * * ** *
33135902 CTCAACTCACTTCTCGCAATATGAGTTGATTTTTG-AAAACAGAATTTGCAAAACAGATTTTGAA
1 CTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTGAAAAACAGAAATCGAA
* *
33135966 AATACCTCGGCATGTGACTTGAGGCTCAACTCACCTCTCGTAATATGAGTTGATTTTTGAAAAGC
66 AATACCTCAGCA-GTGACCTGAGGCTCAACTCACCTCTCGTAATATGAGTTGATTTTTGAAAAGC
* * **
33136031 ATAAATTGAAAAACATTAATTGAGAATAACTCAGCGTGTCCCGAGG
130 AGAAATCGAAAAACAGAAATTGAGAATAACTCAGCGTGTCCCGAGG
* *
33136077 CTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACATAAATTGAAAAACGGAAATCGAA
1 CTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTGAAAAACAGAAATCGAA
* *
33136142 AATACCTCAGC-GTGTCCTGAGGCTCAACTCATCTCTCGTAATATGAGTTGATTTTTTTGAAAAG
66 AATACCTCAGCAGTGACCTGAGGCTCAACTCACCTCTCGTAATATGAGTTGA--TTTTTGAAAAG
* * * *
33136206 CAGAAATCGGAAAGCAGAAATTGA-AACTACCTCAGTGTG-CCCTGAGG
129 CAGAAATCGAAAAACAGAAATTGAGAA-TAACTCAGCGTGTCCC-GAGG
* * *
33136253 CTCAACTCACCTCTCACAATTATGAGTTGATTTTTGACAAACAGCAATTGAAAA
1 CTCAACTCACCTCTCGCAA-TATGAGTTGATTTTTGAAAAACAGAAATTGAAAA
33136307 TACCTCAGCG
Statistics
Matches: 200, Mismatches: 24, Indels: 10
0.85 0.10 0.04
Matches are distributed among these distances:
174 37 0.19
175 39 0.19
176 93 0.47
177 31 0.16
ACGTcount: A:0.35, C:0.20, G:0.17, T:0.28
Consensus pattern (175 bp):
CTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTGAAAAACAGAAATCGAA
AATACCTCAGCAGTGACCTGAGGCTCAACTCACCTCTCGTAATATGAGTTGATTTTTGAAAAGCA
GAAATCGAAAAACAGAAATTGAGAATAACTCAGCGTGTCCCGAGG
Found at i:33149065 original size:21 final size:24
Alignment explanation
Indices: 33149020--33149076 Score: 75
Period size: 23 Copynumber: 2.5 Consensus size: 24
33149010 ATAACACCAC
*
33149020 ATAAATATGTACATAGGACAATAT
1 ATAAATATATACATAGGACAATAT
33149044 A-AAATATATACAT-GGA-AATAT
1 ATAAATATATACATAGGACAATAT
33149065 ATAAATAATATA
1 ATAAAT-ATATA
33149077 TAACTAGTAA
Statistics
Matches: 30, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
21 6 0.20
22 7 0.23
23 16 0.53
24 1 0.03
ACGTcount: A:0.56, C:0.05, G:0.09, T:0.30
Consensus pattern (24 bp):
ATAAATATATACATAGGACAATAT
Done.