Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr9
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 91122320
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2661692 characters in sequence are not A, C, G, or T
File 115 of 279
Found at i:36382076 original size:21 final size:20
Alignment explanation
Indices: 36382050--36382100 Score: 61
Period size: 21 Copynumber: 2.5 Consensus size: 20
36382040 ATAAATCCAA
36382050 AAATTATTTTAATTATAATAT
1 AAATTATTTTAATTAT-ATAT
*
36382071 AAATTATTGTT-ATTATATTT
1 AAATTATT-TTAATTATATAT
36382091 AAA-TATTTTA
1 AAATTATTTTA
36382101 CTGAATTAGT
Statistics
Matches: 27, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
18 2 0.07
19 4 0.15
20 6 0.22
21 13 0.48
22 2 0.07
ACGTcount: A:0.43, C:0.00, G:0.02, T:0.55
Consensus pattern (20 bp):
AAATTATTTTAATTATATAT
Found at i:36393285 original size:45 final size:45
Alignment explanation
Indices: 36393079--36393285 Score: 157
Period size: 45 Copynumber: 4.6 Consensus size: 45
36393069 GGATTGAAAC
* * * * * * *
36393079 CCCTAAAGTTGCTGAGGAGTAGATTAAAGTTA-TAGATCTTATCT
1 CCCTGAAGTTGCAGTGGAATAGATTAAAGATAGCAAATCTTATCT
* ** * *
36393123 CCCTGAAGTTGCAGTGGAGTAGATCGAAGATAGCAAACCTTATCC
1 CCCTGAAGTTGCAGTGGAATAGATTAAAGATAGCAAATCTTATCT
** * * * * * *
36393168 CCCTGAAGTTGCAGTGGGGTAGGTTGAAGTTA-CGAGTCCTATCT
1 CCCTGAAGTTGCAGTGGAATAGATTAAAGATAGCAAATCTTATCT
* * * * *
36393212 CCTTGAAGTTGTAGTGGAACAGACTAAAGATAGCAAATCTTATTT
1 CCCTGAAGTTGCAGTGGAATAGATTAAAGATAGCAAATCTTATCT
* *
36393257 CCCTGAAGTTACAATGGAATAGATTAAAG
1 CCCTGAAGTTGCAGTGGAATAGATTAAAG
36393286 CTACAAGTTA
Statistics
Matches: 123, Mismatches: 38, Indels: 3
0.75 0.23 0.02
Matches are distributed among these distances:
44 56 0.46
45 67 0.54
ACGTcount: A:0.31, C:0.16, G:0.24, T:0.29
Consensus pattern (45 bp):
CCCTGAAGTTGCAGTGGAATAGATTAAAGATAGCAAATCTTATCT
Found at i:36393589 original size:31 final size:32
Alignment explanation
Indices: 36393553--36393624 Score: 101
Period size: 31 Copynumber: 2.3 Consensus size: 32
36393543 TTGCTGGTCC
36393553 AATTTGGTACATAAACTTGACA-ATTTTTCCT
1 AATTTGGTACATAAACTTGACACATTTTTCCT
* * * *
36393584 AATTTGGAACTTAAACTTGACACTTTTTTCTT
1 AATTTGGTACATAAACTTGACACATTTTTCCT
36393616 AATTTGGTA
1 AATTTGGTA
36393625 TTTCATCTTT
Statistics
Matches: 35, Mismatches: 5, Indels: 1
0.85 0.12 0.02
Matches are distributed among these distances:
31 20 0.57
32 15 0.43
ACGTcount: A:0.31, C:0.14, G:0.11, T:0.44
Consensus pattern (32 bp):
AATTTGGTACATAAACTTGACACATTTTTCCT
Found at i:36398584 original size:38 final size:38
Alignment explanation
Indices: 36398533--36398611 Score: 149
Period size: 38 Copynumber: 2.1 Consensus size: 38
36398523 AATGAACATA
36398533 TAAAGATATAGTGGCACTATGTCAATTATCTCAATCTT
1 TAAAGATATAGTGGCACTATGTCAATTATCTCAATCTT
*
36398571 TAAAGATATAGTGGCATTATGTCAATTATCTCAATCTT
1 TAAAGATATAGTGGCACTATGTCAATTATCTCAATCTT
36398609 TAA
1 TAA
36398612 TAACCATAAC
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
38 40 1.00
ACGTcount: A:0.35, C:0.14, G:0.13, T:0.38
Consensus pattern (38 bp):
TAAAGATATAGTGGCACTATGTCAATTATCTCAATCTT
Found at i:36400845 original size:30 final size:31
Alignment explanation
Indices: 36400809--36400925 Score: 89
Period size: 31 Copynumber: 3.8 Consensus size: 31
36400799 AAGAATTTTA
*
36400809 GAAAATTTTAATTAAA-CCCCAAAAATGTTT
1 GAAAATTTTAATTAAATCCTCAAAAATGTTT
* * * **
36400839 GAAAATTGTCATT-AAGCAGCACAAAA-GTTCT
1 GAAAATTTTAATTAAATCCTCA-AAAATGTT-T
* * *
36400870 GCAAATTTTAATCAAATTCTCAAAAAT-TTT
1 GAAAATTTTAATTAAATCCTCAAAAATGTTT
*
36400900 AAAAAATTTTAATTAAATCCTCAAAA
1 -GAAAATTTTAATTAAATCCTCAAAA
36400926 CTTAAGGTAA
Statistics
Matches: 65, Mismatches: 16, Indels: 11
0.71 0.17 0.12
Matches are distributed among these distances:
29 2 0.03
30 18 0.28
31 41 0.63
32 4 0.06
ACGTcount: A:0.47, C:0.14, G:0.07, T:0.32
Consensus pattern (31 bp):
GAAAATTTTAATTAAATCCTCAAAAATGTTT
Found at i:36404893 original size:46 final size:44
Alignment explanation
Indices: 36404834--36404948 Score: 149
Period size: 44 Copynumber: 2.6 Consensus size: 44
36404824 ACAGGACAGA
* *
36404834 ACAGAAATGAGCCATGTAAGTCCATATTAGAAATATGGCTTTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATT--AAATATGGCATTGGAG
* *
36404880 ACAGGATTGAGCCATGTAAGTCCATATTATATATGGCATTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATTAAATATGGCATTGGAG
* **
36404924 ACAGGAATAATTCATGTAAGTCCAT
1 ACAGGAATGAGCCATGTAAGTCCAT
36404949 GTCAAAGACA
Statistics
Matches: 61, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
44 35 0.57
46 26 0.43
ACGTcount: A:0.36, C:0.14, G:0.23, T:0.28
Consensus pattern (44 bp):
ACAGGAATGAGCCATGTAAGTCCATATTAAATATGGCATTGGAG
Found at i:36404929 original size:44 final size:45
Alignment explanation
Indices: 36404834--36404967 Score: 153
Period size: 46 Copynumber: 3.0 Consensus size: 45
36404824 ACAGGACAGA
* *
36404834 ACAGAAATGAGCCATGTAAGTCCATATTAGAAATATGGCTTTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATTA-AAATATGGCATTGGAG
* *
36404880 ACAGGATTGAGCCATGTAAGTCCATATT-ATATATGGCATTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATTAAAATATGGCATTGGAG
* ** * * *
36404924 ACAGGAATAATTCATGTAAGTCCATGTCAAAGACATGGCATTGG
1 ACAGGAATGAGCCATGTAAGTCCATATTAAA-ATATGGCATTGG
36404968 CAGGATATTG
Statistics
Matches: 74, Mismatches: 12, Indels: 4
0.82 0.13 0.04
Matches are distributed among these distances:
44 36 0.49
45 1 0.01
46 37 0.50
ACGTcount: A:0.35, C:0.14, G:0.24, T:0.27
Consensus pattern (45 bp):
ACAGGAATGAGCCATGTAAGTCCATATTAAAATATGGCATTGGAG
Found at i:36411797 original size:46 final size:44
Alignment explanation
Indices: 36411738--36411852 Score: 149
Period size: 44 Copynumber: 2.6 Consensus size: 44
36411728 ACAGGACAGA
* *
36411738 ACAGAAATGAGCCATGTAAGTCCATATTAGAAATATGGCTTTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATT--AAATATGGCATTGGAG
* *
36411784 ACAGGATTGAGCCATGTAAGTCCATATTATATATGGCATTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATTAAATATGGCATTGGAG
* **
36411828 ACAGGAATAATTCATGTAAGTCCAT
1 ACAGGAATGAGCCATGTAAGTCCAT
36411853 GTCAAAGACA
Statistics
Matches: 61, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
44 35 0.57
46 26 0.43
ACGTcount: A:0.36, C:0.14, G:0.23, T:0.28
Consensus pattern (44 bp):
ACAGGAATGAGCCATGTAAGTCCATATTAAATATGGCATTGGAG
Found at i:36411833 original size:44 final size:45
Alignment explanation
Indices: 36411738--36411871 Score: 153
Period size: 46 Copynumber: 3.0 Consensus size: 45
36411728 ACAGGACAGA
* *
36411738 ACAGAAATGAGCCATGTAAGTCCATATTAGAAATATGGCTTTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATTA-AAATATGGCATTGGAG
* *
36411784 ACAGGATTGAGCCATGTAAGTCCATATT-ATATATGGCATTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATTAAAATATGGCATTGGAG
* ** * * *
36411828 ACAGGAATAATTCATGTAAGTCCATGTCAAAGACATGGCATTGG
1 ACAGGAATGAGCCATGTAAGTCCATATTAAA-ATATGGCATTGG
36411872 CAGGATATTG
Statistics
Matches: 74, Mismatches: 12, Indels: 4
0.82 0.13 0.04
Matches are distributed among these distances:
44 36 0.49
45 1 0.01
46 37 0.50
ACGTcount: A:0.35, C:0.14, G:0.24, T:0.27
Consensus pattern (45 bp):
ACAGGAATGAGCCATGTAAGTCCATATTAAAATATGGCATTGGAG
Found at i:36415980 original size:17 final size:18
Alignment explanation
Indices: 36415960--36415993 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
36415950 AAATAAAAAA
36415960 TTTGAG-AAAAGTTTAAG
1 TTTGAGCAAAAGTTTAAG
*
36415977 TTTGAGCTAAAGTTTAA
1 TTTGAGCAAAAGTTTAA
36415994 AAATGGTGCC
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.38, C:0.03, G:0.21, T:0.38
Consensus pattern (18 bp):
TTTGAGCAAAAGTTTAAG
Found at i:36425702 original size:15 final size:14
Alignment explanation
Indices: 36425672--36425705 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
36425662 TTAAAGATGA
*
36425672 TATAAAAATATCAT
1 TATAAAAATATAAT
36425686 TATAAAAATATTAAT
1 TATAAAAATA-TAAT
36425701 TATAA
1 TATAA
36425706 TTAAAAATAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 10 0.56
15 8 0.44
ACGTcount: A:0.59, C:0.03, G:0.00, T:0.38
Consensus pattern (14 bp):
TATAAAAATATAAT
Found at i:36427102 original size:15 final size:15
Alignment explanation
Indices: 36427066--36427107 Score: 50
Period size: 15 Copynumber: 2.9 Consensus size: 15
36427056 ATTTTTTTAA
36427066 ATTTTAAAAATA-AT
1 ATTTTAAAAATATAT
* * *
36427080 ATTATAAATATATCT
1 ATTTTAAAAATATAT
36427095 ATTTTAAAAATAT
1 ATTTTAAAAATAT
36427108 TTTTTTACCA
Statistics
Matches: 22, Mismatches: 5, Indels: 1
0.79 0.18 0.04
Matches are distributed among these distances:
14 10 0.45
15 12 0.55
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.45
Consensus pattern (15 bp):
ATTTTAAAAATATAT
Found at i:36428157 original size:21 final size:21
Alignment explanation
Indices: 36428133--36428175 Score: 77
Period size: 21 Copynumber: 2.0 Consensus size: 21
36428123 CTTATCATTA
36428133 TTCTCCAATTTACTCAGATTT
1 TTCTCCAATTTACTCAGATTT
*
36428154 TTCTCCAATTTATTCAGATTT
1 TTCTCCAATTTACTCAGATTT
36428175 T
1 T
36428176 GATTTGTTTG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.23, C:0.21, G:0.05, T:0.51
Consensus pattern (21 bp):
TTCTCCAATTTACTCAGATTT
Found at i:36431506 original size:5 final size:5
Alignment explanation
Indices: 36431496--36431520 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
36431486 GGAATGTAAC
36431496 ATTTT ATTTT ATTTT ATTTT ATTTT
1 ATTTT ATTTT ATTTT ATTTT ATTTT
36431521 CTTTAACAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.20, C:0.00, G:0.00, T:0.80
Consensus pattern (5 bp):
ATTTT
Found at i:36432649 original size:21 final size:21
Alignment explanation
Indices: 36432623--36432664 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
36432613 ACTTGTCATT
36432623 AAAGTCACGACACCAAGCCCC
1 AAAGTCACGACACCAAGCCCC
36432644 AAAGTCACGACACCAAGCCCC
1 AAAGTCACGACACCAAGCCCC
36432665 GAGATCAAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.38, C:0.43, G:0.14, T:0.05
Consensus pattern (21 bp):
AAAGTCACGACACCAAGCCCC
Found at i:36432881 original size:23 final size:24
Alignment explanation
Indices: 36432853--36432915 Score: 76
Period size: 24 Copynumber: 2.7 Consensus size: 24
36432843 TCTTCCCATA
*
36432853 TTTTTAGATTATG-TTT-CTTTTTC
1 TTTTTAGATTA-GATTTCCCTTTTC
*
36432876 TTTTTAAATTAGATTTCCCTTTTC
1 TTTTTAGATTAGATTTCCCTTTTC
*
36432900 TTTTTAGAATAGATTT
1 TTTTTAGATTAGATTT
36432916 TATTTTTTGT
Statistics
Matches: 34, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
22 1 0.03
23 13 0.38
24 20 0.59
ACGTcount: A:0.21, C:0.10, G:0.08, T:0.62
Consensus pattern (24 bp):
TTTTTAGATTAGATTTCCCTTTTC
Found at i:36438718 original size:17 final size:17
Alignment explanation
Indices: 36438696--36438733 Score: 67
Period size: 17 Copynumber: 2.2 Consensus size: 17
36438686 ATTTTACTTT
*
36438696 TTTTAGAATTAATTTAG
1 TTTTAGAATTAATTTAC
36438713 TTTTAGAATTAATTTAC
1 TTTTAGAATTAATTTAC
36438730 TTTT
1 TTTT
36438734 TTAATATTTT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.32, C:0.03, G:0.08, T:0.58
Consensus pattern (17 bp):
TTTTAGAATTAATTTAC
Found at i:36443134 original size:53 final size:53
Alignment explanation
Indices: 36443008--36443158 Score: 205
Period size: 53 Copynumber: 2.8 Consensus size: 53
36442998 ATAAGTGCGC
* **
36443008 CCGTTTAAGACCATAGCTGGGCTATGGCATCGGTGCAATGTGATAATGTGACT
1 CCGTATAAGACCATAGCTGGGCTATGGCATCGGTATAATGTGATAATGTGACT
*
36443061 CCGTATAAGACCATAGCTGGGCTATGGCATCGGTATAATGTGATAATGTGATT
1 CCGTATAAGACCATAGCTGGGCTATGGCATCGGTATAATGTGATAATGTGACT
* * *
36443114 CCGTATAAGACCAT-GTCTGGGATATGTCTTCGGTATGATATGTGA
1 CCGTATAAGACCATAG-CTGGGCTATGGCATCGGTAT-A-ATGTGA
36443159 ACCGTGTAAG
Statistics
Matches: 88, Mismatches: 7, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
52 1 0.01
53 80 0.91
54 1 0.01
55 6 0.07
ACGTcount: A:0.26, C:0.17, G:0.27, T:0.30
Consensus pattern (53 bp):
CCGTATAAGACCATAGCTGGGCTATGGCATCGGTATAATGTGATAATGTGACT
Found at i:36448663 original size:23 final size:24
Alignment explanation
Indices: 36448619--36448672 Score: 67
Period size: 23 Copynumber: 2.3 Consensus size: 24
36448609 TTAATTTAAT
* *
36448619 AATTTAAAAGTTATAAAGATAT-C
1 AATTTAAAAGTGATAAAAATATAC
36448642 AACTTTAAAA-TGATAAAAATATAC
1 AA-TTTAAAAGTGATAAAAATATAC
36448666 AATTTAA
1 AATTTAA
36448673 TTATGATTAT
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
23 17 0.63
24 10 0.37
ACGTcount: A:0.56, C:0.06, G:0.06, T:0.33
Consensus pattern (24 bp):
AATTTAAAAGTGATAAAAATATAC
Found at i:36465293 original size:32 final size:32
Alignment explanation
Indices: 36465257--36465320 Score: 119
Period size: 32 Copynumber: 2.0 Consensus size: 32
36465247 AATGTAAACA
*
36465257 AAGGCTCTCACGTTACAATAATCCCCCCCCCC
1 AAGGCTCTCACGTTACAATAACCCCCCCCCCC
36465289 AAGGCTCTCACGTTACAATAACCCCCCCCCCC
1 AAGGCTCTCACGTTACAATAACCCCCCCCCCC
36465321 CGCGCACCAA
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 31 1.00
ACGTcount: A:0.25, C:0.48, G:0.09, T:0.17
Consensus pattern (32 bp):
AAGGCTCTCACGTTACAATAACCCCCCCCCCC
Found at i:36470238 original size:26 final size:26
Alignment explanation
Indices: 36470209--36470261 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
36470199 TTTCAAAATT
*
36470209 AATA-AAAATTAATATTTATTTTTAGA
1 AATACAAAATTAATATTT-TTTTAAGA
**
36470235 AATACAACTTTAATATTTTTTTAAGA
1 AATACAAAATTAATATTTTTTTAAGA
36470261 A
1 A
36470262 CAAACAAACT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 12 0.52
27 11 0.48
ACGTcount: A:0.47, C:0.04, G:0.04, T:0.45
Consensus pattern (26 bp):
AATACAAAATTAATATTTTTTTAAGA
Found at i:36470268 original size:27 final size:27
Alignment explanation
Indices: 36470217--36470268 Score: 70
Period size: 27 Copynumber: 1.9 Consensus size: 27
36470207 TTAATAAAAA
* *
36470217 TTAATATTTATTTTTAGAAATACAACT
1 TTAATATTTATTTTAAGAAAAACAACT
36470244 TTAATATTT-TTTTAAGAACAAACAA
1 TTAATATTTATTTTAAGAA-AAACAA
36470269 ACTAATTATA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 8 0.36
27 14 0.64
ACGTcount: A:0.44, C:0.08, G:0.04, T:0.44
Consensus pattern (27 bp):
TTAATATTTATTTTAAGAAAAACAACT
Found at i:36488853 original size:170 final size:170
Alignment explanation
Indices: 36488571--36489054 Score: 832
Period size: 170 Copynumber: 2.9 Consensus size: 170
36488561 TCATTATAAA
*
36488571 AGGTCTTATTCCCCTGAGATTACGGTGGAACAGACCAAAGAATTGCAGATCTTATCTCCCTGAGA
1 AGGTCTTATTTCCCTGAGATTACGGTGGAACAGACCAAAGAATTGCAGATCTTATCTCCCTGAGA
36488636 TTACAGCGGAGCAGATTGAATATAGTAATCCTATCTCCCTGAAGTTACAATGGAGCGGATTAAAG
66 TTACAGCGGAGCAGATTGAATATAGTAATCCTATCTCCCTGAAGTTACAATGGAGCGGATTAAAG
36488701 GATCTTATCTCTCTGAAGTTACAGTAGAGCAGATCGCACC
131 GATCTTATCTCTCTGAAGTTACAGTAGAGCAGATCGCACC
36488741 AGGTCTTATTTCCCTGAGATTACGGTGGAACAGACCAAAGAATTGCAGATCTTATCTCCCTGAGA
1 AGGTCTTATTTCCCTGAGATTACGGTGGAACAGACCAAAGAATTGCAGATCTTATCTCCCTGAGA
*
36488806 TTACAGCGAAGCAGATTGAATATAGTAATCCTATCTCCCTGAAGTTACAATGGAGCGGATTAAAG
66 TTACAGCGGAGCAGATTGAATATAGTAATCCTATCTCCCTGAAGTTACAATGGAGCGGATTAAAG
36488871 GATCTTATCTCTCTGAAGTTACAGTAGAGCAGATCGCACC
131 GATCTTATCTCTCTGAAGTTACAGTAGAGCAGATCGCACC
* * * * * * * *
36488911 AGATCTTATCTCCCTGAGATTACAGCGGAGCAGATCGAAG-A---CACTATCTTATCTCCCTGAG
1 AGGTCTTATTTCCCTGAGATTACGGTGGAACAGACCAAAGAATTGCA-GATCTTATCTCCCTGAG
*
36488972 ATTACAGCGGAGCAGATTGAATATAGTAATCCTATCTCCCTGAAGTTACTATGGAGCGGATTAAA
65 ATTACAGCGGAGCAGATTGAATATAGTAATCCTATCTCCCTGAAGTTACAATGGAGCGGATTAAA
36489037 GGATCTTATCTCTCTGAA
130 GGATCTTATCTCTCTGAA
36489055 NNNNNNNNNN
Statistics
Matches: 301, Mismatches: 12, Indels: 5
0.95 0.04 0.02
Matches are distributed among these distances:
166 2 0.01
167 97 0.32
169 1 0.00
170 201 0.67
ACGTcount: A:0.31, C:0.21, G:0.21, T:0.27
Consensus pattern (170 bp):
AGGTCTTATTTCCCTGAGATTACGGTGGAACAGACCAAAGAATTGCAGATCTTATCTCCCTGAGA
TTACAGCGGAGCAGATTGAATATAGTAATCCTATCTCCCTGAAGTTACAATGGAGCGGATTAAAG
GATCTTATCTCTCTGAAGTTACAGTAGAGCAGATCGCACC
Found at i:36488971 original size:43 final size:42
Alignment explanation
Indices: 36488618--36488988 Score: 210
Period size: 41 Copynumber: 8.8 Consensus size: 42
36488608 AAGAATTGCA
* *
36488618 GATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAATATAG
1 GATCTTATCTCCCTGAGATTACAGCGGAGCAGATCGAA-ACAG
* * ** * *
36488661 TAATCCTATCTCCCTGA-AGTTACAATGGAGCGGAT--TAA-AG
1 -GATCTTATCTCCCTGAGA-TTACAGCGGAGCAGATCGAAACAG
* ** * *
36488701 GATCTTATCTCTCTGA-AGTTACAGTAGAGCAGATCGCACCAG
1 GATCTTATCTCCCTGAGA-TTACAGCGGAGCAGATCGAAACAG
* * * * * *
36488743 G-TCTTATTTCCCTGAGATTACGGTGGAACAGA-CCAAAGAATTG
1 GATCTTATCTCCCTGAGATTACAGCGGAGCAGATCGAAA-CA--G
* * *
36488786 CAGATCTTATCTCCCTGAGATTACAGCGAAGCAGATTGAATATAG
1 --GATCTTATCTCCCTGAGATTACAGCGGAGCAGATCGAA-ACAG
* * ** * *
36488831 TAATCCTATCTCCCTGA-AGTTACAATGGAGCGGAT--TAA-AG
1 -GATCTTATCTCCCTGAGA-TTACAGCGGAGCAGATCGAAACAG
* ** * *
36488871 GATCTTATCTCTCTGA-AGTTACAGTAGAGCAGATCGCACCA-
1 GATCTTATCTCCCTGAGA-TTACAGCGGAGCAGATCGAAACAG
*
36488912 GATCTTATCTCCCTGAGATTACAGCGGAGCAGATCGAAGACAC
1 GATCTTATCTCCCTGAGATTACAGCGGAGCAGATCGAA-ACAG
*
36488955 TATCTTATCTCCCTGAGATTACAGCGGAGCAGAT
1 GATCTTATCTCCCTGAGATTACAGCGGAGCAGAT
36488989 TGAATATAGT
Statistics
Matches: 254, Mismatches: 53, Indels: 41
0.73 0.15 0.12
Matches are distributed among these distances:
39 56 0.22
40 6 0.02
41 61 0.24
42 10 0.04
43 36 0.14
44 53 0.21
45 2 0.01
46 26 0.10
47 3 0.01
48 1 0.00
ACGTcount: A:0.30, C:0.22, G:0.21, T:0.27
Consensus pattern (42 bp):
GATCTTATCTCCCTGAGATTACAGCGGAGCAGATCGAAACAG
Found at i:36489028 original size:44 final size:42
Alignment explanation
Indices: 36488619--36489054 Score: 233
Period size: 44 Copynumber: 10.4 Consensus size: 42
36488609 AGAATTGCAG
* *
36488619 ATCTTATCTCCCTG-AGATTACAGCGGAGCAGATTGAATATAGT
1 ATCTTATCTCCCTGAAG-TTACAGTGGAGCAGATTGAA-ACAGT
* * * *
36488662 AATCCTATCTCCCTGAAGTTACAATGGAGCGGATT--AA-AGG
1 -ATCTTATCTCCCTGAAGTTACAGTGGAGCAGATTGAAACAGT
* * * * *
36488702 ATCTTATCTCTCTGAAGTTACAGTAGAGCAGATCGCACCAG-
1 ATCTTATCTCCCTGAAGTTACAGTGGAGCAGATTGAAACAGT
* * * * ** *
36488743 GTCTTATTTCCCTG-AGATTACGGTGGAACAGACCAAAGAATTGCAG-
1 ATCTTATCTCCCTGAAG-TTACAGTGGAGCAG---ATTGAA--ACAGT
* * *
36488789 ATCTTATCTCCCTG-AGATTACAGCGAAGCAGATTGAATATAGT
1 ATCTTATCTCCCTGAAG-TTACAGTGGAGCAGATTGAA-ACAGT
* * * *
36488832 AATCCTATCTCCCTGAAGTTACAATGGAGCGGATT--AA-AGG
1 -ATCTTATCTCCCTGAAGTTACAGTGGAGCAGATTGAAACAGT
* * * * *
36488872 ATCTTATCTCTCTGAAGTTACAGTAGAGCAGATCGCACCAG-
1 ATCTTATCTCCCTGAAGTTACAGTGGAGCAGATTGAAACAGT
* * *
36488913 ATCTTATCTCCCTG-AGATTACAGCGGAGCAGATCGAAGACACT
1 ATCTTATCTCCCTGAAG-TTACAGTGGAGCAGATTGAA-ACAGT
* *
36488956 ATCTTATCTCCCTG-AGATTACAGCGGAGCAGATTGAATATAGT
1 ATCTTATCTCCCTGAAG-TTACAGTGGAGCAGATTGAA-ACAGT
* * *
36488999 AATCCTATCTCCCTGAAGTTACTA-TGGAGCGGATT--AA-AGG
1 -ATCTTATCTCCCTGAAGTTAC-AGTGGAGCAGATTGAAACAGT
*
36489039 ATCTTATCTCTCTGAA
1 ATCTTATCTCCCTGAA
36489055 NNNNNNNNNN
Statistics
Matches: 309, Mismatches: 61, Indels: 49
0.74 0.15 0.12
Matches are distributed among these distances:
39 70 0.23
40 10 0.03
41 57 0.18
42 12 0.04
43 43 0.14
44 82 0.27
45 7 0.02
46 28 0.09
ACGTcount: A:0.31, C:0.21, G:0.21, T:0.28
Consensus pattern (42 bp):
ATCTTATCTCCCTGAAGTTACAGTGGAGCAGATTGAAACAGT
Found at i:36496687 original size:85 final size:85
Alignment explanation
Indices: 36496544--36496713 Score: 340
Period size: 85 Copynumber: 2.0 Consensus size: 85
36496534 AAAAGAAGTG
36496544 AGATAGGTATTATCATCCAGGTATGAATCCTCAAGTGATGAAATTCTTTGTAAAATGATCTAGCT
1 AGATAGGTATTATCATCCAGGTATGAATCCTCAAGTGATGAAATTCTTTGTAAAATGATCTAGCT
36496609 TGATTGTAAAAGCTGCTTTC
66 TGATTGTAAAAGCTGCTTTC
36496629 AGATAGGTATTATCATCCAGGTATGAATCCTCAAGTGATGAAATTCTTTGTAAAATGATCTAGCT
1 AGATAGGTATTATCATCCAGGTATGAATCCTCAAGTGATGAAATTCTTTGTAAAATGATCTAGCT
36496694 TGATTGTAAAAGCTGCTTTC
66 TGATTGTAAAAGCTGCTTTC
36496714 TTCTATGTAG
Statistics
Matches: 85, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
85 85 1.00
ACGTcount: A:0.32, C:0.14, G:0.19, T:0.35
Consensus pattern (85 bp):
AGATAGGTATTATCATCCAGGTATGAATCCTCAAGTGATGAAATTCTTTGTAAAATGATCTAGCT
TGATTGTAAAAGCTGCTTTC
Found at i:36500388 original size:21 final size:21
Alignment explanation
Indices: 36500362--36500402 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
36500352 AGACGAGCAA
* *
36500362 TACTCCACAGCAGGTGGAGTG
1 TACTCCAAAACAGGTGGAGTG
36500383 TACTCCAAAACAGGTGGAGT
1 TACTCCAAAACAGGTGGAGT
36500403 TTGAGCAGAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.29, C:0.22, G:0.29, T:0.20
Consensus pattern (21 bp):
TACTCCAAAACAGGTGGAGTG
Found at i:36502341 original size:16 final size:16
Alignment explanation
Indices: 36502308--36502341 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
36502298 GGAGATTGTT
* *
36502308 AACATTAATGGGAGAC
1 AACATTAATGGCAAAC
36502324 AACATTAATGGCAAAC
1 AACATTAATGGCAAAC
36502340 AA
1 AA
36502342 TACAAAGTGG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.50, C:0.15, G:0.18, T:0.18
Consensus pattern (16 bp):
AACATTAATGGCAAAC
Found at i:36504359 original size:2 final size:2
Alignment explanation
Indices: 36504352--36504393 Score: 84
Period size: 2 Copynumber: 21.0 Consensus size: 2
36504342 AACTCAGGTA
36504352 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
36504394 ACACACACAC
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 40 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
TC
Found at i:36509360 original size:23 final size:23
Alignment explanation
Indices: 36509330--36509385 Score: 112
Period size: 23 Copynumber: 2.4 Consensus size: 23
36509320 AAACCCAACT
36509330 AACCTAGCCCAATACCCTAAACC
1 AACCTAGCCCAATACCCTAAACC
36509353 AACCTAGCCCAATACCCTAAACC
1 AACCTAGCCCAATACCCTAAACC
36509376 AACCTAGCCC
1 AACCTAGCCC
36509386 GATCCTAAAA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 33 1.00
ACGTcount: A:0.38, C:0.45, G:0.05, T:0.12
Consensus pattern (23 bp):
AACCTAGCCCAATACCCTAAACC
Found at i:36511893 original size:23 final size:23
Alignment explanation
Indices: 36511862--36511912 Score: 84
Period size: 23 Copynumber: 2.2 Consensus size: 23
36511852 TTAATATGAG
* *
36511862 TAAATTAATTTCTATACATTAGA
1 TAAAGTAATTTCTATACATTAAA
36511885 TAAAGTAATTTCTATACATTAAA
1 TAAAGTAATTTCTATACATTAAA
36511908 TAAAG
1 TAAAG
36511913 AGTAAATCGA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
23 26 1.00
ACGTcount: A:0.47, C:0.08, G:0.06, T:0.39
Consensus pattern (23 bp):
TAAAGTAATTTCTATACATTAAA
Found at i:36519528 original size:21 final size:22
Alignment explanation
Indices: 36519502--36519548 Score: 78
Period size: 21 Copynumber: 2.2 Consensus size: 22
36519492 CTCTGCTCAA
*
36519502 ACTCCACCTGCTGCGGAGTAC-
1 ACTCCACCTGCTGCGAAGTACT
36519523 ACTCCACCTGCTGCGAAGTACT
1 ACTCCACCTGCTGCGAAGTACT
36519545 ACTC
1 ACTC
36519549 ACTCCTTCTG
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
21 20 0.83
22 4 0.17
ACGTcount: A:0.21, C:0.38, G:0.19, T:0.21
Consensus pattern (22 bp):
ACTCCACCTGCTGCGAAGTACT
Found at i:36522556 original size:19 final size:19
Alignment explanation
Indices: 36522524--36522561 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
36522514 ATTATAGGCC
*
36522524 CCATTTTCAACAATTTTCT
1 CCATTATCAACAATTTTCT
*
36522543 CCATTATCATCAATTTTCT
1 CCATTATCAACAATTTTCT
36522562 ACTTGTTTTA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.26, C:0.26, G:0.00, T:0.47
Consensus pattern (19 bp):
CCATTATCAACAATTTTCT
Found at i:36525402 original size:21 final size:22
Alignment explanation
Indices: 36525376--36525422 Score: 78
Period size: 21 Copynumber: 2.2 Consensus size: 22
36525366 CTCTGCTCAA
*
36525376 ACTCCACCTGCTGCGGAGTAC-
1 ACTCCACCTGCTGCGAAGTACT
36525397 ACTCCACCTGCTGCGAAGTACT
1 ACTCCACCTGCTGCGAAGTACT
36525419 ACTC
1 ACTC
36525423 ACTCCTTCTG
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
21 20 0.83
22 4 0.17
ACGTcount: A:0.21, C:0.38, G:0.19, T:0.21
Consensus pattern (22 bp):
ACTCCACCTGCTGCGAAGTACT
Found at i:36536429 original size:33 final size:33
Alignment explanation
Indices: 36536392--36536458 Score: 125
Period size: 33 Copynumber: 2.0 Consensus size: 33
36536382 TTGCGTTATT
*
36536392 TTTTTTTAGATATGAATTTTCATGTTAGGACAA
1 TTTTTTTAGATATGAATTGTCATGTTAGGACAA
36536425 TTTTTTTAGATATGAATTGTCATGTTAGGACAA
1 TTTTTTTAGATATGAATTGTCATGTTAGGACAA
36536458 T
1 T
36536459 AAATATGATA
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 33 1.00
ACGTcount: A:0.30, C:0.06, G:0.16, T:0.48
Consensus pattern (33 bp):
TTTTTTTAGATATGAATTGTCATGTTAGGACAA
Found at i:36537684 original size:3 final size:3
Alignment explanation
Indices: 36537676--36537706 Score: 62
Period size: 3 Copynumber: 10.3 Consensus size: 3
36537666 GATGAGAAAA
36537676 TGG TGG TGG TGG TGG TGG TGG TGG TGG TGG T
1 TGG TGG TGG TGG TGG TGG TGG TGG TGG TGG T
36537707 TTTCTTTGCG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.00, C:0.00, G:0.65, T:0.35
Consensus pattern (3 bp):
TGG
Found at i:36550763 original size:108 final size:107
Alignment explanation
Indices: 36550533--36550791 Score: 344
Period size: 108 Copynumber: 2.4 Consensus size: 107
36550523 CTATCACCTA
* * ****
36550533 TCAATGGCCAGCACCCAGTACCAAAAAAAAATTTAAA--TTTTTTTCAAAAAATTTTTTTTTGCT
1 TCAATGGCCGGCACCCAGTACC-AAAAAAAATTCAAATTTTTTTTTCAAAAAA-TACAATTTGCT
* *
36550596 CTTTAAAAATACGAGTTTTAAAACAAAATTTGGGTGCTGGCCTG
64 CTCTAAAAATACGAGTTTTAAAAAAAAATTTGGGTGCTGGCCTG
*
36550640 TCAGTGGCCGGCACCCAGTACCAAAAAAAATTCAAATTTTTTTTTCAAAAAA-ACAATTTGCTCT
1 TCAATGGCCGGCACCCAGTACCAAAAAAAATTCAAATTTTTTTTTCAAAAAATACAATTTGCTCT
* **
36550704 CTAAAAATACGAGTTTTAAAAAAAAAATTTGGGGTGTTGGTTTG
66 CTAAAAATACGAGTTTT-AAAAAAAAATTT-GGGTGCTGGCCTG
*
36550748 TCAATGGCCGGCACCCAGTACAAAAAAAAATTCAAATTTTTTTT
1 TCAATGGCCGGCACCCAGTACCAAAAAAAATTCAAATTTTTTTT
36550792 GCTCTCTAAA
Statistics
Matches: 134, Mismatches: 14, Indels: 7
0.86 0.09 0.05
Matches are distributed among these distances:
106 37 0.28
107 31 0.23
108 66 0.49
ACGTcount: A:0.37, C:0.16, G:0.14, T:0.32
Consensus pattern (107 bp):
TCAATGGCCGGCACCCAGTACCAAAAAAAATTCAAATTTTTTTTTCAAAAAATACAATTTGCTCT
CTAAAAATACGAGTTTTAAAAAAAAATTTGGGTGCTGGCCTG
Found at i:36550867 original size:93 final size:93
Alignment explanation
Indices: 36550696--36550884 Score: 283
Period size: 93 Copynumber: 2.0 Consensus size: 93
36550686 AAAAAAACAA
* * **
36550696 TTTGCTCTCTAAAAATACGAGTTTTAAAAAAAAAATTTGGGGTGTTGGTTTGTCAATGGCCGGCA
1 TTTGCTCTCTAAAAATACGAGTTTTAAAAAAAAAATTTGGAGTGCTGGCCTGTCAATGGCCGGCA
36550761 CCCAGTACAAAAAAAAATTCAAATTTTT
66 CCCAGTACAAAAAAAAATTCAAATTTTT
*
36550789 TTTGCTCTCTAAAAATACGAGTTTTTTAAAAAAAAAATTT-TAGTGCTGGCCTGTCAATGGCCGG
1 TTTGCTCTCTAAAAATACGAG--TTTTAAAAAAAAAATTTGGAGTGCTGGCCTGTCAATGGCCGG
* *
36550853 CACCTAGTAC-AAAAAAAATTCAATTTTTT
64 CACCCAGTACAAAAAAAAATTCAAATTTTT
36550882 TTT
1 TTT
36550885 CAAATTTTTT
Statistics
Matches: 87, Mismatches: 7, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
93 42 0.48
94 28 0.32
95 17 0.20
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.34
Consensus pattern (93 bp):
TTTGCTCTCTAAAAATACGAGTTTTAAAAAAAAAATTTGGAGTGCTGGCCTGTCAATGGCCGGCA
CCCAGTACAAAAAAAAATTCAAATTTTT
Found at i:36555452 original size:107 final size:110
Alignment explanation
Indices: 36555301--36555560 Score: 366
Period size: 107 Copynumber: 2.3 Consensus size: 110
36555291 ATTGTGTCAG
* *
36555301 GCCAGTACCCAAATTTTTTTTTTTAAAAAAAACTCGTATTTTTAGAGAGCAAAAAAA-AATTTTT
1 GCCAGCACCCAAA-TTTTTTTTTT----AAAACTCGTATTTTTAGAGAGCAAAAAAATAA-ATTT
* * *
36555365 TGAAAAAAATTTTGAA-TTTTTTTTTGGTACTGGGTGCCGGCCATTGATAG
60 TGAAAAAAAATTTGAATTTTTTTTTTGGTACTGGGTGCCGGCCATTGACAA
*
36555415 GCCAGCA-CTAAA-TTTTTTTTTAAAACTCGTATTTTTAGAGAGCAAAAAAATAAATTTTGAAAA
1 GCCAGCACCCAAATTTTTTTTTTAAAACTCGTATTTTTAGAGAGCAAAAAAATAAATTTTGAAAA
*
36555478 AAAATTTGAATTTTTTTTTTGGTATTGGGTGCCGGCCATTGACAA
66 AAAATTTGAATTTTTTTTTTGGTACTGGGTGCCGGCCATTGACAA
36555523 GCCAGCACCCAAATTTTTTTTTTTAAAACTCGTATTTT
1 GCCAGCACCCAAA-TTTTTTTTTTAAAACTCGTATTTT
36555561 GTATACTAAT
Statistics
Matches: 133, Mismatches: 8, Indels: 13
0.86 0.05 0.08
Matches are distributed among these distances:
107 47 0.35
108 40 0.30
109 4 0.03
111 32 0.24
113 4 0.03
114 6 0.05
ACGTcount: A:0.33, C:0.13, G:0.15, T:0.39
Consensus pattern (110 bp):
GCCAGCACCCAAATTTTTTTTTTAAAACTCGTATTTTTAGAGAGCAAAAAAATAAATTTTGAAAA
AAAATTTGAATTTTTTTTTTGGTACTGGGTGCCGGCCATTGACAA
Found at i:36564995 original size:16 final size:18
Alignment explanation
Indices: 36564962--36564995 Score: 54
Period size: 16 Copynumber: 2.0 Consensus size: 18
36564952 GTATAAAGAT
36564962 AATTATTATACAAATTAA
1 AATTATTATACAAATTAA
36564980 AATTA-TATAC-AATTAA
1 AATTATTATACAAATTAA
36564996 CTTAAAATAT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 6 0.38
17 5 0.31
18 5 0.31
ACGTcount: A:0.56, C:0.06, G:0.00, T:0.38
Consensus pattern (18 bp):
AATTATTATACAAATTAA
Found at i:36571957 original size:30 final size:32
Alignment explanation
Indices: 36571873--36571957 Score: 95
Period size: 30 Copynumber: 2.7 Consensus size: 32
36571863 AAAAATATAT
36571873 GAATATATTATATATCTTT-TAGGCATATATTTAA
1 GAATATATTATATATCTTTCTA-G-A-ATATTTAA
* * *
36571907 GAATATCTTATATATTTTTCT-G-ATATTTAG
1 GAATATATTATATATCTTTCTAGAATATTTAA
36571937 GAATATATTATATATCTTTCT
1 GAATATATTATATATCTTTCT
36571958 TATTTCTGTA
Statistics
Matches: 45, Mismatches: 5, Indels: 6
0.80 0.09 0.11
Matches are distributed among these distances:
30 26 0.58
33 1 0.02
34 17 0.38
35 1 0.02
ACGTcount: A:0.34, C:0.07, G:0.08, T:0.51
Consensus pattern (32 bp):
GAATATATTATATATCTTTCTAGAATATTTAA
Found at i:36576427 original size:48 final size:50
Alignment explanation
Indices: 36576369--36576468 Score: 150
Period size: 48 Copynumber: 2.0 Consensus size: 50
36576359 GTATATATTA
*
36576369 ATTTTTAATTTTGATTCAATTTTATATCTT-TA-TTTTATATTAGATAGT
1 ATTTCTAATTTTGATTCAATTTTATATCTTATATTTTTATATTAGATAGT
* * *
36576417 ATTTCTAATTTTGATTTAATTTTATATTTTATATTTTTATATTGGATAGT
1 ATTTCTAATTTTGATTCAATTTTATATCTTATATTTTTATATTAGATAGT
36576467 AT
1 AT
36576469 GATGTAAATA
Statistics
Matches: 46, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
48 27 0.59
49 2 0.04
50 17 0.37
ACGTcount: A:0.29, C:0.03, G:0.07, T:0.61
Consensus pattern (50 bp):
ATTTCTAATTTTGATTCAATTTTATATCTTATATTTTTATATTAGATAGT
Found at i:36577841 original size:15 final size:15
Alignment explanation
Indices: 36577821--36577876 Score: 57
Period size: 15 Copynumber: 4.0 Consensus size: 15
36577811 ATTTACTAAA
*
36577821 ATTATAATATATAAT
1 ATTATAAAATATAAT
36577836 ATTATAAAATAT-A-
1 ATTATAAAATATAAT
*
36577849 ATT-TAAAATA-ATT
1 ATTATAAAATATAAT
*
36577862 ATTATTAAATATAAT
1 ATTATAAAATATAAT
36577877 TTAACAAAAA
Statistics
Matches: 33, Mismatches: 4, Indels: 8
0.73 0.09 0.18
Matches are distributed among these distances:
12 7 0.21
13 6 0.18
14 7 0.21
15 13 0.39
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (15 bp):
ATTATAAAATATAAT
Found at i:36577871 original size:26 final size:26
Alignment explanation
Indices: 36577831--36578000 Score: 84
Period size: 26 Copynumber: 7.0 Consensus size: 26
36577821 ATTATAATAT
*
36577831 ATAA-TATTATAAAATATAATTTAAA
1 ATAATTATTATTAAATATAATTTAAA
36577856 ATAATTATTATTAAATATAATTTAACA
1 ATAATTATTATTAAATATAATTTAA-A
* *
36577883 A-AAATA-TA-T-AATTTAA--TAAA
1 ATAATTATTATTAAATATAATTTAAA
** * *
36577903 ATTCTTAGTATTAAATAT--TCTT-AT
1 ATAATTATTATTAAATATAAT-TTAAA
* * *
36577927 ATGAA-T-TTACTAAA-ATCA--TAAT
1 AT-AATTATTATTAAATATAATTTAAA
*
36577949 AT-ATTATACTATAAAATATAATTTAAA
1 ATAATTAT--TATTAAATATAATTTAAA
36577976 ATAATTATTATTAAATATAATTTAA
1 ATAATTATTATTAAATATAATTTAA
36578001 CAAAAATATA
Statistics
Matches: 107, Mismatches: 17, Indels: 41
0.65 0.10 0.25
Matches are distributed among these distances:
20 3 0.03
21 7 0.07
22 9 0.08
23 13 0.12
24 14 0.13
25 10 0.09
26 39 0.36
27 7 0.07
28 5 0.05
ACGTcount: A:0.52, C:0.04, G:0.01, T:0.43
Consensus pattern (26 bp):
ATAATTATTATTAAATATAATTTAAA
Found at i:36577889 original size:59 final size:59
Alignment explanation
Indices: 36577826--36578024 Score: 214
Period size: 59 Copynumber: 3.3 Consensus size: 59
36577816 CTAAAATTAT
36577826 AATATATAATATT-ATAAAATATAATTTAAAATAATTATTATTAAATATAATTTAACAAA
1 AATATATAAT-TTAATAAAATATAATTTAAAATAATTATTATTAAATATAATTTAACAAA
* * * * * *
36577885 AATATATAATTTAATAAAAT-T--CTTAGTATTAAATATTCTT--ATATGAATTT-ACTAA
1 AATATATAATTTAATAAAATATAATTTA-AAATAATTATTATTAAATAT-AATTTAACAAA
36577940 AATCATAATATATTATACTATAAAATATAATTTAAAATAATTATTATTAAATATAATTTAACAAA
1 AAT-AT-ATA-ATT-TA--ATAAAATATAATTTAAAATAATTATTATTAAATATAATTTAACAAA
36578005 AATATATAATTTAATAAAAT
1 AATATATAATTTAATAAAAT
36578025 TCTTAGTATT
Statistics
Matches: 113, Mismatches: 12, Indels: 30
0.73 0.08 0.19
Matches are distributed among these distances:
55 11 0.10
56 10 0.09
57 13 0.12
58 6 0.05
59 26 0.23
61 9 0.08
62 4 0.04
63 13 0.12
64 10 0.09
65 11 0.10
ACGTcount: A:0.54, C:0.04, G:0.01, T:0.42
Consensus pattern (59 bp):
AATATATAATTTAATAAAATATAATTTAAAATAATTATTATTAAATATAATTTAACAAA
Found at i:36577937 original size:120 final size:120
Alignment explanation
Indices: 36577804--36578043 Score: 453
Period size: 120 Copynumber: 2.0 Consensus size: 120
36577794 TTTAATAGAA
* *
36577804 TATATGAATTTACTAAAATTATAATATATAATATTATAAAATATAATTTAAAATAATTATTATTA
1 TATATGAATTTACTAAAATCATAATATATAATACTATAAAATATAATTTAAAATAATTATTATTA
36577869 AATATAATTTAACAAAAATATATAATTTAATAAAATTCTTAGTATTAAATATTCT
66 AATATAATTTAACAAAAATATATAATTTAATAAAATTCTTAGTATTAAATATTCT
*
36577924 TATATGAATTTACTAAAATCATAATATATTATACTATAAAATATAATTTAAAATAATTATTATTA
1 TATATGAATTTACTAAAATCATAATATATAATACTATAAAATATAATTTAAAATAATTATTATTA
36577989 AATATAATTTAACAAAAATATATAATTTAATAAAATTCTTAGTATTAAATATTCT
66 AATATAATTTAACAAAAATATATAATTTAATAAAATTCTTAGTATTAAATATTCT
36578044 AATGATTGTA
Statistics
Matches: 117, Mismatches: 3, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
120 117 1.00
ACGTcount: A:0.51, C:0.04, G:0.02, T:0.43
Consensus pattern (120 bp):
TATATGAATTTACTAAAATCATAATATATAATACTATAAAATATAATTTAAAATAATTATTATTA
AATATAATTTAACAAAAATATATAATTTAATAAAATTCTTAGTATTAAATATTCT
Found at i:36586314 original size:48 final size:48
Alignment explanation
Indices: 36586249--36586348 Score: 164
Period size: 48 Copynumber: 2.1 Consensus size: 48
36586239 AAAAATCTAA
* *
36586249 AACAAAAAATTAATATGAAAAAATCGAGAATCAAATCAAATTATGAAG
1 AACAAAAAATTAATATGAAAAAATCAAGAACCAAATCAAATTATGAAG
* *
36586297 AACATAAAGTTAATATGAAAAAATCAAGAACCAAATCAAATTATGAAG
1 AACAAAAAATTAATATGAAAAAATCAAGAACCAAATCAAATTATGAAG
36586345 AACA
1 AACA
36586349 GTTCAAAAAA
Statistics
Matches: 48, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
48 48 1.00
ACGTcount: A:0.60, C:0.10, G:0.10, T:0.20
Consensus pattern (48 bp):
AACAAAAAATTAATATGAAAAAATCAAGAACCAAATCAAATTATGAAG
Found at i:36590746 original size:18 final size:18
Alignment explanation
Indices: 36590723--36590869 Score: 213
Period size: 18 Copynumber: 8.2 Consensus size: 18
36590713 TACGACCGTT
36590723 TACGGCACTATTCACGTA
1 TACGGCACTATTCACGTA
36590741 TACGGCACTATTCACGTA
1 TACGGCACTATTCACGTA
* *
36590759 TACAGTACTATTCACGTA
1 TACGGCACTATTCACGTA
36590777 TACGGCACTATTCACGTA
1 TACGGCACTATTCACGTA
* *
36590795 TACAGTACTATTCACGTA
1 TACGGCACTATTCACGTA
36590813 TACGGCACTATTCACGTA
1 TACGGCACTATTCACGTA
* *
36590831 TACAGTACTATTCACGTA
1 TACGGCACTATTCACGTA
* **
36590849 TACGGTACTGGTCACGTA
1 TACGGCACTATTCACGTA
36590867 TAC
1 TAC
36590870 AGTAGTGGGG
Statistics
Matches: 116, Mismatches: 13, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 116 1.00
ACGTcount: A:0.29, C:0.25, G:0.16, T:0.30
Consensus pattern (18 bp):
TACGGCACTATTCACGTA
Found at i:36590776 original size:36 final size:36
Alignment explanation
Indices: 36590729--36590873 Score: 263
Period size: 36 Copynumber: 4.0 Consensus size: 36
36590719 CGTTTACGGC
36590729 ACTATTCACGTATACGGCACTATTCACGTATACAGT
1 ACTATTCACGTATACGGCACTATTCACGTATACAGT
36590765 ACTATTCACGTATACGGCACTATTCACGTATACAGT
1 ACTATTCACGTATACGGCACTATTCACGTATACAGT
36590801 ACTATTCACGTATACGGCACTATTCACGTATACAGT
1 ACTATTCACGTATACGGCACTATTCACGTATACAGT
* **
36590837 ACTATTCACGTATACGGTACTGGTCACGTATACAGT
1 ACTATTCACGTATACGGCACTATTCACGTATACAGT
36590873 A
1 A
36590874 GTGGGGATTG
Statistics
Matches: 106, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 106 1.00
ACGTcount: A:0.30, C:0.24, G:0.15, T:0.30
Consensus pattern (36 bp):
ACTATTCACGTATACGGCACTATTCACGTATACAGT
Found at i:36592986 original size:6 final size:6
Alignment explanation
Indices: 36592975--36593004 Score: 60
Period size: 6 Copynumber: 5.0 Consensus size: 6
36592965 AGAATTCTAA
36592975 AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT
1 AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT
36593005 CAGATGCAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 24 1.00
ACGTcount: A:0.83, C:0.00, G:0.00, T:0.17
Consensus pattern (6 bp):
AAAAAT
Found at i:36608700 original size:7 final size:7
Alignment explanation
Indices: 36608688--36608716 Score: 58
Period size: 7 Copynumber: 4.1 Consensus size: 7
36608678 AGTTTAGTTA
36608688 AGAATAT
1 AGAATAT
36608695 AGAATAT
1 AGAATAT
36608702 AGAATAT
1 AGAATAT
36608709 AGAATAT
1 AGAATAT
36608716 A
1 A
36608717 TGATCGAATG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 22 1.00
ACGTcount: A:0.59, C:0.00, G:0.14, T:0.28
Consensus pattern (7 bp):
AGAATAT
Found at i:36615643 original size:17 final size:17
Alignment explanation
Indices: 36615593--36615647 Score: 53
Period size: 17 Copynumber: 3.3 Consensus size: 17
36615583 TTAAAACTGT
36615593 AAAATTATATTTAGG-AA
1 AAAATTA-ATTTAGGAAA
* *
36615610 AAAAGT-A-TTAGATAAA
1 AAAATTAATTTAG-GAAA
36615626 AAAATTAATTTAGGAAA
1 AAAATTAATTTAGGAAA
36615643 AAAAT
1 AAAAT
36615648 ACTCCTTTAA
Statistics
Matches: 30, Mismatches: 4, Indels: 8
0.71 0.10 0.19
Matches are distributed among these distances:
14 4 0.13
15 1 0.03
16 7 0.23
17 14 0.47
18 4 0.13
ACGTcount: A:0.60, C:0.00, G:0.11, T:0.29
Consensus pattern (17 bp):
AAAATTAATTTAGGAAA
Found at i:36646562 original size:25 final size:25
Alignment explanation
Indices: 36646534--36646584 Score: 102
Period size: 25 Copynumber: 2.0 Consensus size: 25
36646524 CGTAATTCAA
36646534 TTTAATGAAATTTCTTTTACAATGC
1 TTTAATGAAATTTCTTTTACAATGC
36646559 TTTAATGAAATTTCTTTTACAATGC
1 TTTAATGAAATTTCTTTTACAATGC
36646584 T
1 T
36646585 ATAAATCATA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.31, C:0.12, G:0.08, T:0.49
Consensus pattern (25 bp):
TTTAATGAAATTTCTTTTACAATGC
Found at i:36668389 original size:3 final size:3
Alignment explanation
Indices: 36668381--36668415 Score: 52
Period size: 3 Copynumber: 11.7 Consensus size: 3
36668371 GGTACTGCAC
* *
36668381 ATT ATT ATT ATT ATT ACT ATT ACT ATT ATT ATT AT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
36668416 CATCATCCAA
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.34, C:0.06, G:0.00, T:0.60
Consensus pattern (3 bp):
ATT
Found at i:36688562 original size:19 final size:19
Alignment explanation
Indices: 36688538--36688576 Score: 62
Period size: 19 Copynumber: 2.1 Consensus size: 19
36688528 TGAAATGAAT
36688538 AAGCTATTAAA-AAGAATTA
1 AAGCTA-TAAAGAAGAATTA
36688557 AAGCTATAAAGAAGAATTA
1 AAGCTATAAAGAAGAATTA
36688576 A
1 A
36688577 TATTTTATTT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
18 4 0.21
19 15 0.79
ACGTcount: A:0.59, C:0.05, G:0.13, T:0.23
Consensus pattern (19 bp):
AAGCTATAAAGAAGAATTA
Found at i:36688776 original size:30 final size:30
Alignment explanation
Indices: 36688740--36688807 Score: 77
Period size: 30 Copynumber: 2.3 Consensus size: 30
36688730 TATCTATATA
*
36688740 ATTTTTAAAGAGTTA-AATCA-AATTTTTATT
1 ATTTTTAAAGAATTAGAAT-ATAA-TTTTATT
*
36688770 ATTTTTAATGAATTAGAATATAATTTTATT
1 ATTTTTAAAGAATTAGAATATAATTTTATT
*
36688800 ATTATTAA
1 ATTTTTAA
36688808 TTTAAAATTT
Statistics
Matches: 33, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
30 28 0.85
31 5 0.15
ACGTcount: A:0.41, C:0.01, G:0.06, T:0.51
Consensus pattern (30 bp):
ATTTTTAAAGAATTAGAATATAATTTTATT
Found at i:36696337 original size:13 final size:13
Alignment explanation
Indices: 36696319--36696343 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
36696309 ACTAATCCAA
36696319 AAGAGAGAGAGAT
1 AAGAGAGAGAGAT
36696332 AAGAGAGAGAGA
1 AAGAGAGAGAGA
36696344 GAGACTTGGA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.56, C:0.00, G:0.40, T:0.04
Consensus pattern (13 bp):
AAGAGAGAGAGAT
Found at i:36710033 original size:733 final size:733
Alignment explanation
Indices: 36708627--36710092 Score: 2932
Period size: 733 Copynumber: 2.0 Consensus size: 733
36708617 GATACCATCT
36708627 TCCTTAAAGTTCAGATTGCAGATACAGAGGGTATGAGATCAGGCCCTATTTTTTCGAGTTACTAA
1 TCCTTAAAGTTCAGATTGCAGATACAGAGGGTATGAGATCAGGCCCTATTTTTTCGAGTTACTAA
36708692 CATATCCAATTGTTTGAAAAAAAGTAGTGAATCATTCTAATCCACACGGCCTTGTGTTGCAGGAT
66 CATATCCAATTGTTTGAAAAAAAGTAGTGAATCATTCTAATCCACACGGCCTTGTGTTGCAGGAT
36708757 CTACTAGGAACATCTACTTTCCCTTTGATATTGTGGAAGATACGCCATTGGATGTGGCAACTGAA
131 CTACTAGGAACATCTACTTTCCCTTTGATATTGTGGAAGATACGCCATTGGATGTGGCAACTGAA
36708822 ATGGTGAAGGAGCTTGAGATAACCGATTGGGATCCACTTGAAATTGCAGAAATGATTGATGGTGA
196 ATGGTGAAGGAGCTTGAGATAACCGATTGGGATCCACTTGAAATTGCAGAAATGATTGATGGTGA
36708887 AATTTCAGCTCTAGTCCCACAATGGAAAAAATCAGACCTCCCTAGACATCAAGCCCATAATACAT
261 AATTTCAGCTCTAGTCCCACAATGGAAAAAATCAGACCTCCCTAGACATCAAGCCCATAATACAT
36708952 ATAACTACCAGGAAGATGATGATGATGGGTGTCATCATCCGTTTTACTCTTTCTCCTCCTGTTCT
326 ATAACTACCAGGAAGATGATGATGATGGGTGTCATCATCCGTTTTACTCTTTCTCCTCCTGTTCT
36709017 TCATCCCAAATGTCTGTCTTGATGTCACATGGCTGCGATTGGCTTCGAGGTACGATTCTAGTGTA
391 TCATCCCAAATGTCTGTCTTGATGTCACATGGCTGCGATTGGCTTCGAGGTACGATTCTAGTGTA
36709082 TATATTGTTTGTCAATCCATATATGTTTGTTGCACTAATGTTTAGGTTTTCCTTCCTAGACTGAG
456 TATATTGTTTGTCAATCCATATATGTTTGTTGCACTAATGTTTAGGTTTTCCTTCCTAGACTGAG
36709147 TTATATTATCCATGGGGTTGCAAGCTATTCTTTGTCTTGTCACTTTCGGTATCACATAATTATTT
521 TTATATTATCCATGGGGTTGCAAGCTATTCTTTGTCTTGTCACTTTCGGTATCACATAATTATTT
36709212 ACTTAAACTGGCCTTAGAATTAAGCAAAATAATAAATAAAAAAGAGAAATCATTGTCAGATTGTT
586 ACTTAAACTGGCCTTAGAATTAAGCAAAATAATAAATAAAAAAGAGAAATCATTGTCAGATTGTT
36709277 ATCGCAGATGATGATACCAGCTCTCAGAGCTCTTCGCACTCAGGAATATATTCCAACTTTAGTTA
651 ATCGCAGATGATGATACCAGCTCTCAGAGCTCTTCGCACTCAGGAATATATTCCAACTTTAGTTA
36709342 CTTGTCCGGAGATGACCC
716 CTTGTCCGGAGATGACCC
36709360 TCCTTAAAGTTCAGATTGCAGATACAGAGGGTATGAGATCAGGCCCTATTTTTTCGAGTTACTAA
1 TCCTTAAAGTTCAGATTGCAGATACAGAGGGTATGAGATCAGGCCCTATTTTTTCGAGTTACTAA
36709425 CATATCCAATTGTTTGAAAAAAAGTAGTGAATCATTCTAATCCACACGGCCTTGTGTTGCAGGAT
66 CATATCCAATTGTTTGAAAAAAAGTAGTGAATCATTCTAATCCACACGGCCTTGTGTTGCAGGAT
36709490 CTACTAGGAACATCTACTTTCCCTTTGATATTGTGGAAGATACGCCATTGGATGTGGCAACTGAA
131 CTACTAGGAACATCTACTTTCCCTTTGATATTGTGGAAGATACGCCATTGGATGTGGCAACTGAA
36709555 ATGGTGAAGGAGCTTGAGATAACCGATTGGGATCCACTTGAAATTGCAGAAATGATTGATGGTGA
196 ATGGTGAAGGAGCTTGAGATAACCGATTGGGATCCACTTGAAATTGCAGAAATGATTGATGGTGA
36709620 AATTTCAGCTCTAGTCCCACAATGGAAAAAATCAGACCTCCCTAGACATCAAGCCCATAATACAT
261 AATTTCAGCTCTAGTCCCACAATGGAAAAAATCAGACCTCCCTAGACATCAAGCCCATAATACAT
36709685 ATAACTACCAGGAAGATGATGATGATGGGTGTCATCATCCGTTTTACTCTTTCTCCTCCTGTTCT
326 ATAACTACCAGGAAGATGATGATGATGGGTGTCATCATCCGTTTTACTCTTTCTCCTCCTGTTCT
36709750 TCATCCCAAATGTCTGTCTTGATGTCACATGGCTGCGATTGGCTTCGAGGTACGATTCTAGTGTA
391 TCATCCCAAATGTCTGTCTTGATGTCACATGGCTGCGATTGGCTTCGAGGTACGATTCTAGTGTA
36709815 TATATTGTTTGTCAATCCATATATGTTTGTTGCACTAATGTTTAGGTTTTCCTTCCTAGACTGAG
456 TATATTGTTTGTCAATCCATATATGTTTGTTGCACTAATGTTTAGGTTTTCCTTCCTAGACTGAG
36709880 TTATATTATCCATGGGGTTGCAAGCTATTCTTTGTCTTGTCACTTTCGGTATCACATAATTATTT
521 TTATATTATCCATGGGGTTGCAAGCTATTCTTTGTCTTGTCACTTTCGGTATCACATAATTATTT
36709945 ACTTAAACTGGCCTTAGAATTAAGCAAAATAATAAATAAAAAAGAGAAATCATTGTCAGATTGTT
586 ACTTAAACTGGCCTTAGAATTAAGCAAAATAATAAATAAAAAAGAGAAATCATTGTCAGATTGTT
36710010 ATCGCAGATGATGATACCAGCTCTCAGAGCTCTTCGCACTCAGGAATATATTCCAACTTTAGTTA
651 ATCGCAGATGATGATACCAGCTCTCAGAGCTCTTCGCACTCAGGAATATATTCCAACTTTAGTTA
36710075 CTTGTCCGGAGATGACCC
716 CTTGTCCGGAGATGACCC
36710093 CAATCCTGAT
Statistics
Matches: 733, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
733 733 1.00
ACGTcount: A:0.29, C:0.19, G:0.19, T:0.33
Consensus pattern (733 bp):
TCCTTAAAGTTCAGATTGCAGATACAGAGGGTATGAGATCAGGCCCTATTTTTTCGAGTTACTAA
CATATCCAATTGTTTGAAAAAAAGTAGTGAATCATTCTAATCCACACGGCCTTGTGTTGCAGGAT
CTACTAGGAACATCTACTTTCCCTTTGATATTGTGGAAGATACGCCATTGGATGTGGCAACTGAA
ATGGTGAAGGAGCTTGAGATAACCGATTGGGATCCACTTGAAATTGCAGAAATGATTGATGGTGA
AATTTCAGCTCTAGTCCCACAATGGAAAAAATCAGACCTCCCTAGACATCAAGCCCATAATACAT
ATAACTACCAGGAAGATGATGATGATGGGTGTCATCATCCGTTTTACTCTTTCTCCTCCTGTTCT
TCATCCCAAATGTCTGTCTTGATGTCACATGGCTGCGATTGGCTTCGAGGTACGATTCTAGTGTA
TATATTGTTTGTCAATCCATATATGTTTGTTGCACTAATGTTTAGGTTTTCCTTCCTAGACTGAG
TTATATTATCCATGGGGTTGCAAGCTATTCTTTGTCTTGTCACTTTCGGTATCACATAATTATTT
ACTTAAACTGGCCTTAGAATTAAGCAAAATAATAAATAAAAAAGAGAAATCATTGTCAGATTGTT
ATCGCAGATGATGATACCAGCTCTCAGAGCTCTTCGCACTCAGGAATATATTCCAACTTTAGTTA
CTTGTCCGGAGATGACCC
Found at i:36715154 original size:14 final size:14
Alignment explanation
Indices: 36715135--36715163 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
36715125 GGAGAATTGG
36715135 CCCGAAGCTTTATT
1 CCCGAAGCTTTATT
36715149 CCCGAAGCTTTATT
1 CCCGAAGCTTTATT
36715163 C
1 C
36715164 ACCAGAGGAC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.21, C:0.31, G:0.14, T:0.34
Consensus pattern (14 bp):
CCCGAAGCTTTATT
Found at i:36717028 original size:17 final size:19
Alignment explanation
Indices: 36717008--36717049 Score: 52
Period size: 21 Copynumber: 2.2 Consensus size: 19
36716998 AAGAAAATAT
36717008 AAATAT-AAAT-AATAGAG
1 AAATATCAAATAAATAGAG
36717025 AAATATCACAAATAAATAGAG
1 AAATAT--CAAATAAATAGAG
36717046 AAAT
1 AAAT
36717050 TAAGCACTTA
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
17 6 0.29
20 4 0.19
21 11 0.52
ACGTcount: A:0.64, C:0.05, G:0.10, T:0.21
Consensus pattern (19 bp):
AAATATCAAATAAATAGAG
Found at i:36720984 original size:15 final size:15
Alignment explanation
Indices: 36720964--36720992 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
36720954 AAATGAGTCC
36720964 AATTTATTAAAAAGA
1 AATTTATTAAAAAGA
36720979 AATTTATTAAAAAG
1 AATTTATTAAAAAG
36720993 TTAGAAGCTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.59, C:0.00, G:0.07, T:0.34
Consensus pattern (15 bp):
AATTTATTAAAAAGA
Found at i:36724155 original size:59 final size:58
Alignment explanation
Indices: 36724091--36724215 Score: 180
Period size: 59 Copynumber: 2.1 Consensus size: 58
36724081 CTACATTATA
* * *
36724091 AACTATTGATAAATT-TTATTTTAATCATTTAATTATAAAAAATTATAAAATAATTACTC
1 AACTATTAATAAATTATT-TTTT-ATAATTTAACTATAAAAAATTATAAAATAATTACTC
*
36724150 AACTATTAATAAATTCATTTTTTATAATTTAACTATAAAAAATTATAAAATAATTACTT
1 AACTATTAATAAATT-ATTTTTTATAATTTAACTATAAAAAATTATAAAATAATTACTC
36724209 AACTATT
1 AACTATT
36724216 CAAACTTTTA
Statistics
Matches: 60, Mismatches: 4, Indels: 4
0.88 0.06 0.06
Matches are distributed among these distances:
59 54 0.90
60 4 0.07
61 2 0.03
ACGTcount: A:0.48, C:0.07, G:0.01, T:0.44
Consensus pattern (58 bp):
AACTATTAATAAATTATTTTTTATAATTTAACTATAAAAAATTATAAAATAATTACTC
Found at i:36729596 original size:18 final size:20
Alignment explanation
Indices: 36729567--36729605 Score: 64
Period size: 19 Copynumber: 2.0 Consensus size: 20
36729557 ACGTAAGGTT
36729567 TAAAATATTTT-AAAATAAA
1 TAAAATATTTTAAAAATAAA
36729586 TAAAA-ATTTTAAAAATAAA
1 TAAAATATTTTAAAAATAAA
36729605 T
1 T
36729606 TGCACGTGAG
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
18 5 0.26
19 14 0.74
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (20 bp):
TAAAATATTTTAAAAATAAA
Found at i:36729829 original size:17 final size:18
Alignment explanation
Indices: 36729795--36729830 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 18
36729785 GCTTGGATGC
*
36729795 TTTATTTACTTATTTAAA
1 TTTATTTACTTATATAAA
36729813 TTTATTTA-TTATATAAA
1 TTTATTTACTTATATAAA
36729830 T
1 T
36729831 AGTAAATCGT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 9 0.53
18 8 0.47
ACGTcount: A:0.36, C:0.03, G:0.00, T:0.61
Consensus pattern (18 bp):
TTTATTTACTTATATAAA
Found at i:36731861 original size:26 final size:26
Alignment explanation
Indices: 36731825--36731884 Score: 111
Period size: 26 Copynumber: 2.3 Consensus size: 26
36731815 GCTAAGGTGG
*
36731825 TGCATATTAGTCAGTCCATGGATCAA
1 TGCATATTAGTCAGCCCATGGATCAA
36731851 TGCATATTAGTCAGCCCATGGATCAA
1 TGCATATTAGTCAGCCCATGGATCAA
36731877 TGCATATT
1 TGCATATT
36731885 CAGTTTTCTT
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 33 1.00
ACGTcount: A:0.30, C:0.20, G:0.18, T:0.32
Consensus pattern (26 bp):
TGCATATTAGTCAGCCCATGGATCAA
Found at i:36732670 original size:52 final size:52
Alignment explanation
Indices: 36732614--36732715 Score: 159
Period size: 52 Copynumber: 2.0 Consensus size: 52
36732604 AATTTTGTTT
* ** *
36732614 CATGCATCTGTAAGTGAAATGTGTTTGTATATATATTCTTTTGATATATTTG
1 CATGCATCCGTAAGTGAAATGTGCATCTATATATATTCTTTTGATATATTTG
*
36732666 CATGCATCCGTAAGTGAAATTTGCATCTATATATATTCTTTTGATATATT
1 CATGCATCCGTAAGTGAAATGTGCATCTATATATATTCTTTTGATATATT
36732716 CTTTCTATCT
Statistics
Matches: 45, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
52 45 1.00
ACGTcount: A:0.28, C:0.11, G:0.15, T:0.46
Consensus pattern (52 bp):
CATGCATCCGTAAGTGAAATGTGCATCTATATATATTCTTTTGATATATTTG
Found at i:36732688 original size:116 final size:114
Alignment explanation
Indices: 36732486--36732702 Score: 353
Period size: 116 Copynumber: 1.9 Consensus size: 114
36732476 GCACATTCCA
* * *
36732486 TATAAATTTTGCTTCCTGCATCTGTAAGTGAAATGTGTGTTTATATATTCTTTTTATATATTTGC
1 TATAAATTTTGCTTCATGCATCTGTAAGTGAAATGTGTGTATATATATTCTTTTGATATATTTGC
* *
36732551 ATTCATCCATAAGTGAAATTTGCATGTATATATATTTCTTGCTATATGT
66 ATGCATCCATAAGTGAAATTTGCATCTATATATATTTCTTGCTATATGT
*
36732600 TATAAATTTTGTTTCATGCATCTGTAAGTGAAATGTGTTTGTATATATATTCTTTTGATATATTT
1 TATAAATTTTGCTTCATGCATCTGTAAGTGAAATGTG--TGTATATATATTCTTTTGATATATTT
*
36732665 GCATGCATCCGTAAGTGAAATTTGCATCTATATATATT
64 GCATGCATCCATAAGTGAAATTTGCATCTATATATATT
36732703 CTTTTGATAT
Statistics
Matches: 94, Mismatches: 7, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
114 35 0.37
116 59 0.63
ACGTcount: A:0.28, C:0.11, G:0.14, T:0.47
Consensus pattern (114 bp):
TATAAATTTTGCTTCATGCATCTGTAAGTGAAATGTGTGTATATATATTCTTTTGATATATTTGC
ATGCATCCATAAGTGAAATTTGCATCTATATATATTTCTTGCTATATGT
Found at i:36732741 original size:27 final size:27
Alignment explanation
Indices: 36732709--36732760 Score: 86
Period size: 27 Copynumber: 1.9 Consensus size: 27
36732699 TATTCTTTTG
* *
36732709 ATATATTCTTTCTATCTGTTTGTGTAT
1 ATATATCCTTTCTATCTGTATGTGTAT
36732736 ATATATCCTTTCTATCTGTATGTGT
1 ATATATCCTTTCTATCTGTATGTGT
36732761 GTGTGTCACG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.19, C:0.13, G:0.12, T:0.56
Consensus pattern (27 bp):
ATATATCCTTTCTATCTGTATGTGTAT
Found at i:36739326 original size:43 final size:41
Alignment explanation
Indices: 36739221--36739361 Score: 191
Period size: 43 Copynumber: 3.4 Consensus size: 41
36739211 CCCCGTCAAT
*
36739221 AAAAAAAAAAG--AAGAAAAAGTACTGGGTTAATCGCCTT-
1 AAAAAAAAAAGAAAAGAAAAAGTACTGGGTTAATTGCCTTC
* *
36739259 AAAGAAAAAAAGAAAAAGAGAAAGTACTGGGTTTATTGCCTTC
1 AAA-AAAAAAAG-AAAAGAAAAAGTACTGGGTTAATTGCCTTC
36739302 AAAAAGAAAAAGGAAAAGAAAAAGTACTGGGTTAATTGCCTTC
1 AAAAA-AAAAA-GAAAAGAAAAAGTACTGGGTTAATTGCCTTC
36739345 AAAAAAAAAA-AAAAGAA
1 AAAAAAAAAAGAAAAGAA
36739362 TAAGAAAAAG
Statistics
Matches: 91, Mismatches: 5, Indels: 12
0.84 0.05 0.11
Matches are distributed among these distances:
38 3 0.03
39 8 0.09
40 7 0.08
42 31 0.34
43 41 0.45
44 1 0.01
ACGTcount: A:0.56, C:0.09, G:0.18, T:0.17
Consensus pattern (41 bp):
AAAAAAAAAAGAAAAGAAAAAGTACTGGGTTAATTGCCTTC
Found at i:36739507 original size:21 final size:21
Alignment explanation
Indices: 36739473--36739528 Score: 67
Period size: 21 Copynumber: 2.7 Consensus size: 21
36739463 TTCCCGTTCT
** *
36739473 GGTTCAGTACTTTTAGTCCCC
1 GGTTCAGTTGTTTTAGTACCC
* *
36739494 GGTTCAGTTGTTTTTGTATCC
1 GGTTCAGTTGTTTTAGTACCC
36739515 GGTTCAGTTGTTTT
1 GGTTCAGTTGTTTT
36739529 TACATGTCTG
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 30 1.00
ACGTcount: A:0.11, C:0.18, G:0.23, T:0.48
Consensus pattern (21 bp):
GGTTCAGTTGTTTTAGTACCC
Found at i:36748055 original size:27 final size:26
Alignment explanation
Indices: 36748024--36748201 Score: 153
Period size: 27 Copynumber: 6.6 Consensus size: 26
36748014 TAAATTGTAC
36748024 AGCACTAAGTGTGCGATTCGACTATGT
1 AGCACTAAGTGTGCGATT-GACTATGT
* *
36748051 TGCACTAAGTGTGCGAAATGGA-TATG-
1 AGCACTAAGTGTGCG--ATTGACTATGT
* *
36748077 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCG-ATTGACTATGT
* *
36748105 GGCACTAAGTGTGCGAGATGGACTATGT
1 AGCACTAAGTGTGC--GATTGACTATGT
* * *
36748133 GGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGA-TTGACTATGT
* *
36748160 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGA-TTGACTATGT
*
36748187 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
36748202 GGCTCAATAA
Statistics
Matches: 126, Mismatches: 17, Indels: 16
0.79 0.11 0.10
Matches are distributed among these distances:
26 7 0.06
27 92 0.73
28 24 0.19
29 3 0.02
ACGTcount: A:0.26, C:0.16, G:0.30, T:0.28
Consensus pattern (26 bp):
AGCACTAAGTGTGCGATTGACTATGT
Found at i:36748085 original size:54 final size:54
Alignment explanation
Indices: 36748025--36748175 Score: 189
Period size: 54 Copynumber: 2.8 Consensus size: 54
36748015 AAATTGTACA
*
36748025 GCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGGA-TATGAT-
1 GCACTAAGTGTGCGATT-GACTATGTAGCACTAAGTGTGCGAAATGGACTATG-TG
* ** *
36748079 GCACTAAGTGTGCGAATTGACCATGCGGCACTAAGTGTGCGAGATGGACTATGTG
1 GCACTAAGTGTGCG-ATTGACTATGTAGCACTAAGTGTGCGAAATGGACTATGTG
* *
36748134 GCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTGTGCGA
1 GCACTAAGTGTGCGA-TTGACTATGTAGCACTAAGTGTGCGA
36748176 GTTGATTATA
Statistics
Matches: 84, Mismatches: 9, Indels: 7
0.84 0.09 0.07
Matches are distributed among these distances:
54 42 0.50
55 42 0.50
ACGTcount: A:0.26, C:0.17, G:0.30, T:0.27
Consensus pattern (54 bp):
GCACTAAGTGTGCGATTGACTATGTAGCACTAAGTGTGCGAAATGGACTATGTG
Found at i:36748165 original size:82 final size:81
Alignment explanation
Indices: 36748025--36748180 Score: 208
Period size: 82 Copynumber: 1.9 Consensus size: 81
36748015 AAATTGTACA
* * *
36748025 GCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGGATATGATGCACTAAGTGT
1 GCACTAAGTGTGCGAATCGACTATGTGGCACTAAGTGTGCGAAATGGATACGATGCACTAAGTGT
36748090 GCGAATTGACCATGCG
66 GCGAATTGACCATGCG
* * *
36748106 GCACTAAGTGTGCGAGATGGACTATGTGGCACTAAGTGTGCG-ATTTGATTACG-TAGCACTAAG
1 GCACTAAGTGTGCGA-ATCGACTATGTGGCACTAAGTGTGCGAAATGGA-TACGAT-GCACTAAG
*
36748169 TGTGCGAGTTGA
63 TGTGCGAATTGA
36748181 TTATATAGCA
Statistics
Matches: 65, Mismatches: 7, Indels: 5
0.84 0.09 0.06
Matches are distributed among these distances:
81 20 0.31
82 45 0.69
ACGTcount: A:0.26, C:0.16, G:0.30, T:0.28
Consensus pattern (81 bp):
GCACTAAGTGTGCGAATCGACTATGTGGCACTAAGTGTGCGAAATGGATACGATGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:36748192 original size:82 final size:81
Alignment explanation
Indices: 36748021--36748201 Score: 204
Period size: 82 Copynumber: 2.2 Consensus size: 81
36748011 GATTAAATTG
* * *
36748021 TACAGCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGGATATGATGCACTAA
1 TACAGCACTAAGTGTGCGAATCGACTATGTGGCACTAAGTGTGCGAAATGGATACGATGCACTAA
36748086 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * * * *
36748102 TGCGGCACTAAGTGTGCGAGATGGACTATGTGGCACTAAGTGTGCG-ATTTGATTACG-TAGCAC
1 TACAGCACTAAGTGTGCGA-ATCGACTATGTGGCACTAAGTGTGCGAAATGGA-TACGAT-GCAC
* **
36748165 TAAGTGTGCGAGTTGATTA
63 TAAGTGTGCGAATTGACCA
* *
36748184 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
36748202 GGCTCAATAA
Statistics
Matches: 82, Mismatches: 15, Indels: 5
0.80 0.15 0.05
Matches are distributed among these distances:
81 22 0.27
82 60 0.73
ACGTcount: A:0.27, C:0.16, G:0.29, T:0.28
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGAATCGACTATGTGGCACTAAGTGTGCGAAATGGATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:36752204 original size:46 final size:44
Alignment explanation
Indices: 36752111--36752226 Score: 153
Period size: 46 Copynumber: 2.6 Consensus size: 44
36752101 AGGCGGACGC
* *
36752111 CATGTCCCAGACATGGTCATACACTAACACATCTCGTAGCCGATG
1 CATGTCCCAGACAT-GTCTTACACTAACACATCGCGTAGCCGATG
**
36752156 CATGTCCCAGACATGTCTTACACTGGCTTACATCGCG-AGGCCGATG
1 CATGTCCCAGACATGTCTTACACTAAC--ACATCGCGTA-GCCGATG
36752202 CATGTCCCAGACATGTCTTACACTA
1 CATGTCCCAGACATGTCTTACACTA
36752227 GCGCACAAAT
Statistics
Matches: 63, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
44 10 0.16
45 15 0.24
46 38 0.60
ACGTcount: A:0.26, C:0.31, G:0.19, T:0.24
Consensus pattern (44 bp):
CATGTCCCAGACATGTCTTACACTAACACATCGCGTAGCCGATG
Found at i:36762870 original size:21 final size:21
Alignment explanation
Indices: 36762844--36762887 Score: 88
Period size: 21 Copynumber: 2.1 Consensus size: 21
36762834 ACGAGAATAG
36762844 AGGAAGCTTGTCATGATTGGT
1 AGGAAGCTTGTCATGATTGGT
36762865 AGGAAGCTTGTCATGATTGGT
1 AGGAAGCTTGTCATGATTGGT
36762886 AG
1 AG
36762888 AAAGAGAATA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.25, C:0.09, G:0.34, T:0.32
Consensus pattern (21 bp):
AGGAAGCTTGTCATGATTGGT
Found at i:36772339 original size:22 final size:22
Alignment explanation
Indices: 36772314--36772358 Score: 81
Period size: 22 Copynumber: 2.0 Consensus size: 22
36772304 TGAACACCCA
36772314 ATTTTTACTTAGAATACTTCAT
1 ATTTTTACTTAGAATACTTCAT
*
36772336 ATTTTTACTTGGAATACTTCAT
1 ATTTTTACTTAGAATACTTCAT
36772358 A
1 A
36772359 CTCTGCAACG
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.31, C:0.13, G:0.07, T:0.49
Consensus pattern (22 bp):
ATTTTTACTTAGAATACTTCAT
Found at i:36776719 original size:25 final size:25
Alignment explanation
Indices: 36776675--36776748 Score: 107
Period size: 25 Copynumber: 3.0 Consensus size: 25
36776665 ATAAGCATCT
*
36776675 TGATAT-TGGCTCTCT-TGAGCTTCC
1 TGATATATGGCTCT-TACGAGCTTCC
36776699 TGATATATGGCTCTTACGAGCTTCC
1 TGATATATGGCTCTTACGAGCTTCC
*
36776724 TGATATATGGCTCTAACGAGCTTCC
1 TGATATATGGCTCTTACGAGCTTCC
36776749 CATTAATAGC
Statistics
Matches: 46, Mismatches: 2, Indels: 3
0.90 0.04 0.06
Matches are distributed among these distances:
24 7 0.15
25 39 0.85
ACGTcount: A:0.19, C:0.24, G:0.20, T:0.36
Consensus pattern (25 bp):
TGATATATGGCTCTTACGAGCTTCC
Found at i:36776951 original size:24 final size:24
Alignment explanation
Indices: 36776899--36776953 Score: 83
Period size: 24 Copynumber: 2.3 Consensus size: 24
36776889 GACTCTCTGA
* *
36776899 AGCTACCCGATAATGGCTTTTATG
1 AGCTTCCCGATAATGGCTGTTATG
*
36776923 AGCTTCCCGATTATGGCTGTTATG
1 AGCTTCCCGATAATGGCTGTTATG
36776947 AGCTTCC
1 AGCTTCC
36776954 TATTATATGG
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
24 28 1.00
ACGTcount: A:0.20, C:0.24, G:0.22, T:0.35
Consensus pattern (24 bp):
AGCTTCCCGATAATGGCTGTTATG
Found at i:36778669 original size:48 final size:48
Alignment explanation
Indices: 36778613--36778754 Score: 196
Period size: 48 Copynumber: 3.0 Consensus size: 48
36778603 TTAGGGGTTA
36778613 CATTGAGTTGGCTTTGAGCCATGATATTAGCACTTCGGGTGCGAGATT
1 CATTGAGTTGGCTTTGAGCCATGATATTAGCACTTCGGGTGCGAGATT
* * * *
36778661 CATTGAGTTGGC-TTCAGGCCATGATATTGGCACTTCAGGTGTGAGATT
1 CATTGAGTTGGCTTTGA-GCCATGATATTAGCACTTCGGGTGCGAGATT
* * * *
36778709 CATTGAGTTGGCTTCGGGCTATGATATTAGCACTTAGGGTGCGAGA
1 CATTGAGTTGGCTTTGAGCCATGATATTAGCACTTCGGGTGCGAGA
36778755 CTCCTAAGTA
Statistics
Matches: 80, Mismatches: 12, Indels: 4
0.83 0.12 0.04
Matches are distributed among these distances:
47 3 0.04
48 76 0.95
49 1 0.01
ACGTcount: A:0.21, C:0.16, G:0.30, T:0.32
Consensus pattern (48 bp):
CATTGAGTTGGCTTTGAGCCATGATATTAGCACTTCGGGTGCGAGATT
Found at i:36779541 original size:4 final size:4
Alignment explanation
Indices: 36779532--36779562 Score: 62
Period size: 4 Copynumber: 7.8 Consensus size: 4
36779522 AGCAAACGTG
36779532 AGAA AGAA AGAA AGAA AGAA AGAA AGAA AGA
1 AGAA AGAA AGAA AGAA AGAA AGAA AGAA AGA
36779563 GATAGAAAAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 27 1.00
ACGTcount: A:0.74, C:0.00, G:0.26, T:0.00
Consensus pattern (4 bp):
AGAA
Found at i:36782782 original size:9 final size:9
Alignment explanation
Indices: 36782763--36782795 Score: 50
Period size: 9 Copynumber: 3.7 Consensus size: 9
36782753 TTTTAGTTAA
36782763 TTAAGCCATT
1 TTAA-CCATT
36782773 TTAACCATT
1 TTAACCATT
36782782 TT-ACCATT
1 TTAACCATT
36782790 TTAACC
1 TTAACC
36782796 TTTAATAACA
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
8 8 0.36
9 10 0.45
10 4 0.18
ACGTcount: A:0.30, C:0.24, G:0.03, T:0.42
Consensus pattern (9 bp):
TTAACCATT
Found at i:36796310 original size:79 final size:79
Alignment explanation
Indices: 36796179--36796346 Score: 273
Period size: 79 Copynumber: 2.1 Consensus size: 79
36796169 TTTATGGTAG
* *
36796179 AAAATGAAAAGTTTTTGATAGATAGACAACTTTTGTTAAGGAAATTTTGATGAAATCATGATTTA
1 AAAATGAAAAGTTGTTGATAGATAAACAACTTTTGTTAAGGAAATTTTGATGAAATCATGATTTA
*
36796244 GGGGCTAAATTGAA
66 GGGACTAAATTGAA
* * *
36796258 AAAATGGAAAGTTGTTGATATATAAACAACTTTTGTTAAGGGAATTTTGATGAAATCATGATTTA
1 AAAATGAAAAGTTGTTGATAGATAAACAACTTTTGTTAAGGAAATTTTGATGAAATCATGATTTA
36796323 GGGACTAAATTGAA
66 GGGACTAAATTGAA
*
36796337 AAGATGAAAA
1 AAAATGAAAA
36796347 ATTCATGGAA
Statistics
Matches: 81, Mismatches: 8, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
79 81 1.00
ACGTcount: A:0.42, C:0.05, G:0.20, T:0.33
Consensus pattern (79 bp):
AAAATGAAAAGTTGTTGATAGATAAACAACTTTTGTTAAGGAAATTTTGATGAAATCATGATTTA
GGGACTAAATTGAA
Found at i:36805199 original size:22 final size:21
Alignment explanation
Indices: 36805164--36805239 Score: 68
Period size: 22 Copynumber: 3.7 Consensus size: 21
36805154 AAAAGGTATC
* *
36805164 TACAAATTAAATCTCTAAGAT
1 TACAAATCATATCTCTAAGAT
36805185 TACAAAATCATATCTTCTAAGAT
1 TAC-AAATCATATC-TCTAAGAT
* *
36805208 TGCATATCATA--TCTAAGAT
1 TACAAATCATATCTCTAAGAT
*
36805227 TGC-AATCATATCT
1 TACAAATCATATCT
36805240 AAGATTGTAT
Statistics
Matches: 46, Mismatches: 5, Indels: 9
0.77 0.08 0.15
Matches are distributed among these distances:
18 6 0.13
19 11 0.24
20 1 0.02
21 3 0.07
22 15 0.33
23 10 0.22
ACGTcount: A:0.41, C:0.17, G:0.07, T:0.36
Consensus pattern (21 bp):
TACAAATCATATCTCTAAGAT
Found at i:36805256 original size:35 final size:37
Alignment explanation
Indices: 36805193--36805290 Score: 150
Period size: 35 Copynumber: 2.7 Consensus size: 37
36805183 ATTACAAAAT
36805193 CATATC-T-TCTAAGATTGCATATCATATCTAAGATTG
1 CATATCATATCTAAGATTG-ATATCATATCTAAGATTG
36805229 CA-ATCATATCTAAGATTG-TATCATATCTAAGATTG
1 CATATCATATCTAAGATTGATATCATATCTAAGATTG
36805264 CATATCATATCTAAGATTGCATATCAT
1 CATATCATATCTAAGATTG-ATATCAT
36805291 TGAAGATTAT
Statistics
Matches: 57, Mismatches: 0, Indels: 8
0.88 0.00 0.12
Matches are distributed among these distances:
35 22 0.39
36 19 0.33
37 10 0.18
38 6 0.11
ACGTcount: A:0.36, C:0.16, G:0.10, T:0.38
Consensus pattern (37 bp):
CATATCATATCTAAGATTGATATCATATCTAAGATTG
Found at i:36805298 original size:17 final size:19
Alignment explanation
Indices: 36805200--36805290 Score: 161
Period size: 19 Copynumber: 4.9 Consensus size: 19
36805190 AATCATATCT
36805200 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
36805219 TCTAAGATTGCA-ATCATA
1 TCTAAGATTGCATATCATA
36805237 TCTAAGATTG--TATCATA
1 TCTAAGATTGCATATCATA
36805254 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
36805273 TCTAAGATTGCATATCAT
1 TCTAAGATTGCATATCAT
36805291 TGAAGATTAT
Statistics
Matches: 69, Mismatches: 0, Indels: 6
0.92 0.00 0.08
Matches are distributed among these distances:
17 16 0.23
18 16 0.23
19 37 0.54
ACGTcount: A:0.36, C:0.15, G:0.11, T:0.37
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:36805706 original size:45 final size:45
Alignment explanation
Indices: 36805635--36805908 Score: 277
Period size: 45 Copynumber: 6.1 Consensus size: 45
36805625 GGAAGGCGAT
* * * *
36805635 ATCTGCTATCTTTGATTTGCTCCCCGTCTAATACAGAGACGCCAA
1 ATCTGTTATCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAA
* *
36805680 ATCTGTTATCTTCGATCTGCTTCCCGTCTAATACAGAGACGCCAA
1 ATCTGTTATCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAA
* * *
36805725 ATCTGCT-TCTTCAATCTGCTCCCCGTCTAATATAGAGATGCCAA
1 ATCTGTTATCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAA
* * *
36805769 ATCTGTTATCTCCGATTTGCTCCCTGTCTAATACAGAGATGCCAA
1 ATCTGTTATCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAA
* * * * * * * * *
36805814 ATCTGTCATCTTGGATCTACT--TCGATGTAA-ACACATGAAGGTCAG
1 ATCTGTTATCTTCGATCTGCTCCCCG-TCTAATACAGA-G-ATGCCAA
*
36805859 ATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAA
1 ATCTG-T-TATCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAA
36805906 ATC
1 ATC
36805909 ATCTTGGATC
Statistics
Matches: 183, Mismatches: 37, Indels: 16
0.78 0.16 0.07
Matches are distributed among these distances:
43 5 0.03
44 44 0.24
45 104 0.57
46 1 0.01
47 18 0.10
48 5 0.03
49 6 0.03
ACGTcount: A:0.25, C:0.27, G:0.16, T:0.31
Consensus pattern (45 bp):
ATCTGTTATCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAA
Found at i:36805762 original size:89 final size:89
Alignment explanation
Indices: 36805652--36805818 Score: 273
Period size: 89 Copynumber: 1.9 Consensus size: 89
36805642 ATCTTTGATT
*
36805652 TGCTCCCCGTCTAATACAGAGACGCCAAATCTGTTATCTTCGATCTGCTTCCC-GTCTAATACAG
1 TGCTCCCCGTCTAATACAGAGACGCCAAATCTGTTATCTCCGATCTGC-TCCCTGTCTAATACAG
36805716 AGACGCCAAATCTGCTTCTTCAATC
65 AGACGCCAAATCTGCTTCTTCAATC
* * *
36805741 TGCTCCCCGTCTAATATAGAGATGCCAAATCTGTTATCTCCGATTTGCTCCCTGTCTAATACAGA
1 TGCTCCCCGTCTAATACAGAGACGCCAAATCTGTTATCTCCGATCTGCTCCCTGTCTAATACAGA
*
36805806 GATGCCAAATCTG
66 GACGCCAAATCTG
36805819 TCATCTTGGA
Statistics
Matches: 72, Mismatches: 5, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
88 4 0.06
89 68 0.94
ACGTcount: A:0.25, C:0.29, G:0.16, T:0.30
Consensus pattern (89 bp):
TGCTCCCCGTCTAATACAGAGACGCCAAATCTGTTATCTCCGATCTGCTCCCTGTCTAATACAGA
GACGCCAAATCTGCTTCTTCAATC
Found at i:36806454 original size:78 final size:78
Alignment explanation
Indices: 36805848--36806424 Score: 1005
Period size: 78 Copynumber: 7.4 Consensus size: 78
36805838 ATGTAAACAC
36805848 ATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCT
1 ATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCT
36805913 TGGATCTGCTTCA
66 TGGATCTGCTTCA
* *
36805926 ATGAAGGTCCA-ATCTGTTATGTCTTCGATCTACTCCCCGTCTAATACAGAGATGCCAAATCATC
1 ATGAAGGT-CAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATC
36805990 TTGGATCTGCTTCA
65 TTGGATCTGCTTCA
36806004 ATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCT
1 ATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCT
36806069 TGGATCTGCTTCA
66 TGGATCTGCTTCA
* *
36806082 ATGAAGGTCAGATCTGCTGTGTCTTCGATCTGCTCCCCGTCTAGTACAGAGATGCCAAATCATCT
1 ATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCT
36806147 TGGATCTGCTTCA
66 TGGATCTGCTTCA
* *
36806160 ATGAAGGTCCA-ATCTGTTATGTCTTTGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATC
1 ATGAAGGT-CAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATC
36806224 TTGGATCTGCTTCA
65 TTGGATCTGCTTCA
* *
36806238 ATGAAGGTCAGATCTGTTGTGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCT
1 ATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCT
36806303 TGGATCTGCTTCA
66 TGGATCTGCTTCA
* *
36806316 ATGAAGGTCAGATCTGTTGTGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCT
1 ATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCT
36806381 TGGATCTGCTTCA
66 TGGATCTGCTTCA
* * *
36806394 ATCAAGGTCAGACCTACTATGTCTTCGATCT
1 ATGAAGGTCAGATCTGCTATGTCTTCGATCT
36806425 ACTCTCTGTC
Statistics
Matches: 478, Mismatches: 17, Indels: 8
0.95 0.03 0.02
Matches are distributed among these distances:
77 4 0.01
78 470 0.98
79 4 0.01
ACGTcount: A:0.24, C:0.25, G:0.19, T:0.32
Consensus pattern (78 bp):
ATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCT
TGGATCTGCTTCA
Found at i:36806756 original size:376 final size:376
Alignment explanation
Indices: 36806240--36807050 Score: 1325
Period size: 376 Copynumber: 2.2 Consensus size: 376
36806230 CTGCTTCAAT
* * * * **
36806240 GAAGGTCAGATCTGTTGTGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCTTG
1 GAAGGTTAGATCTGTTATGTCTTCGATCTGCTCTCCGTCGAATATGGAGATGCCAAATCATCTTG
* * *
36806305 GATCTGCTTCAATGAAGGTCAGATCTGTTGTGTCTTCGATCTGCTCCCCGTCTAATACAGAGATG
66 GATCTGCTTCAATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAAAGATG
*
36806370 CCAAATCATCTTGGATCTGCTTCAATCAAGGTCAGACCTACTATGTCTTCGATCTACTCTCTGTC
131 CCAAATCATCTTGGATCTGCTTCAATCAAGGTCAGACCTACTATGTCTTCGATCTACTCTCCGTC
*
36806435 GAATATGAAGATGCCAAATCTGTTTCTTCAATTTGTTCTCCGACAGTACAGAGATGCCAAATCAT
196 GAATATGAAGATGCCAAATCTGTTTCTTCAATTTATTCTCCGACAGTACAGAGATGCCAAATCAT
* *
36806500 CTTAGATCTGTTTCAGCGTAAACACGTGAAAGCCAAATATGCTATGTCTTCGATCCGCTCCTTGT
261 CTTAGATCTGCTTCAGCGTAAACACGTGAAAGCCAAATATACTATGTCTTCGATCCGCTCCTTGT
* *
36806565 CAATGCAAGGATGCCAAATCATCTTGGATCTACTTCGATGTGAAAACATCC
326 AAACGCAAGGATGCCAAATCATCTTGGATCTACTTCGATGTGAAAACATCC
* * * *
36806616 GAAGGTTAGATCTTTTATGTCTTTGATCTGTTCTCCATCGAATATGGAGATGCCAAATCATCTTG
1 GAAGGTTAGATCTGTTATGTCTTCGATCTGCTCTCCGTCGAATATGGAGATGCCAAATCATCTTG
*
36806681 GATCTGCTTCAATGAAGGTCAGATCTGCTATGTCTTTGATCTGCTCCCCGTCTAATACAAAGATG
66 GATCTGCTTCAATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAAAGATG
* ** * *
36806746 CCAAATCATCTTGGATCTGCTTCAATGAAGGTCAGATTTGCTATGTCTTCGATCTGCTCTCCGTC
131 CCAAATCATCTTGGATCTGCTTCAATCAAGGTCAGACCTACTATGTCTTCGATCTACTCTCCGTC
* * * * *
36806811 GAATGTGGAGATGCCAAATCTGTTTCTTCGATTTATTCTCTGACAGTACATAGATGCCAAATCAT
196 GAATATGAAGATGCCAAATCTGTTTCTTCAATTTATTCTCCGACAGTACAGAGATGCCAAATCAT
* *
36806876 CTTAGATCTGCTTCAGCGTAAACACGTGAAAGCCAAATCTACTATGTCTTCGATCTGCTCCTTGT
261 CTTAGATCTGCTTCAGCGTAAACACGTGAAAGCCAAATATACTATGTCTTCGATCCGCTCCTTGT
36806941 AAACGCAAGGATGCCAAATCATCTTGGATCTACTTCGATGTGAAAACATCC
326 AAACGCAAGGATGCCAAATCATCTTGGATCTACTTCGATGTGAAAACATCC
*
36806992 GAAGGTTAGATCTGCTATGTCTTCGATCTGCTCTCCGTCGAATATGGAGATGCCAAATC
1 GAAGGTTAGATCTGTTATGTCTTCGATCTGCTCTCCGTCGAATATGGAGATGCCAAATC
36807051 TGTTTCTTCG
Statistics
Matches: 398, Mismatches: 37, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
376 398 1.00
ACGTcount: A:0.26, C:0.23, G:0.19, T:0.32
Consensus pattern (376 bp):
GAAGGTTAGATCTGTTATGTCTTCGATCTGCTCTCCGTCGAATATGGAGATGCCAAATCATCTTG
GATCTGCTTCAATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAAAGATG
CCAAATCATCTTGGATCTGCTTCAATCAAGGTCAGACCTACTATGTCTTCGATCTACTCTCCGTC
GAATATGAAGATGCCAAATCTGTTTCTTCAATTTATTCTCCGACAGTACAGAGATGCCAAATCAT
CTTAGATCTGCTTCAGCGTAAACACGTGAAAGCCAAATATACTATGTCTTCGATCCGCTCCTTGT
AAACGCAAGGATGCCAAATCATCTTGGATCTACTTCGATGTGAAAACATCC
Found at i:36806823 original size:78 final size:78
Alignment explanation
Indices: 36806616--36806830 Score: 313
Period size: 78 Copynumber: 2.8 Consensus size: 78
36806606 GAAAACATCC
* ** * *
36806616 GAAGGTTAGATCTTTTATGTCTTTGATCTGTTCTCCATCGAATATGGAGATGCCAAATCATCTTG
1 GAAGGTCAGATCTGCTATGTCTTTGATCTGCTCTCCGTCGAATATGGAGATGCCAAATCATCTTG
36806681 GATCTGCTTCAAT
66 GATCTGCTTCAAT
* * ***
36806694 GAAGGTCAGATCTGCTATGTCTTTGATCTGCTCCCCGTCTAATACAAAGATGCCAAATCATCTTG
1 GAAGGTCAGATCTGCTATGTCTTTGATCTGCTCTCCGTCGAATATGGAGATGCCAAATCATCTTG
36806759 GATCTGCTTCAAT
66 GATCTGCTTCAAT
* * *
36806772 GAAGGTCAGATTTGCTATGTCTTCGATCTGCTCTCCGTCGAATGTGGAGATGCCAAATC
1 GAAGGTCAGATCTGCTATGTCTTTGATCTGCTCTCCGTCGAATATGGAGATGCCAAATC
36806831 TGTTTCTTCG
Statistics
Matches: 119, Mismatches: 18, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
78 119 1.00
ACGTcount: A:0.24, C:0.21, G:0.20, T:0.34
Consensus pattern (78 bp):
GAAGGTCAGATCTGCTATGTCTTTGATCTGCTCTCCGTCGAATATGGAGATGCCAAATCATCTTG
GATCTGCTTCAAT
Found at i:36811345 original size:38 final size:38
Alignment explanation
Indices: 36811300--36811376 Score: 136
Period size: 38 Copynumber: 2.0 Consensus size: 38
36811290 TTTTCACCTC
36811300 TTTCCCTTCCTCCAGGACTACATTCTCTACTGCCTCTT
1 TTTCCCTTCCTCCAGGACTACATTCTCTACTGCCTCTT
* *
36811338 TTTCCCTTCCTCTAGGGCTACATTCTCTACTGCCTCTT
1 TTTCCCTTCCTCCAGGACTACATTCTCTACTGCCTCTT
36811376 T
1 T
36811377 CTCATGTGGC
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
38 37 1.00
ACGTcount: A:0.12, C:0.38, G:0.09, T:0.42
Consensus pattern (38 bp):
TTTCCCTTCCTCCAGGACTACATTCTCTACTGCCTCTT
Found at i:36815429 original size:22 final size:21
Alignment explanation
Indices: 36815394--36815469 Score: 68
Period size: 22 Copynumber: 3.7 Consensus size: 21
36815384 AAAAGGTATC
* *
36815394 TACAAATTAAATCTCTAAGAT
1 TACAAATCATATCTCTAAGAT
36815415 TACAAAATCATATCTTCTAAGAT
1 TAC-AAATCATATC-TCTAAGAT
* *
36815438 TGCATATCATA--TCTAAGAT
1 TACAAATCATATCTCTAAGAT
*
36815457 TGC-AATCATATCT
1 TACAAATCATATCT
36815470 AAGGTTGTAT
Statistics
Matches: 46, Mismatches: 5, Indels: 9
0.77 0.08 0.15
Matches are distributed among these distances:
18 6 0.13
19 11 0.24
20 1 0.02
21 3 0.07
22 15 0.33
23 10 0.22
ACGTcount: A:0.41, C:0.17, G:0.07, T:0.36
Consensus pattern (21 bp):
TACAAATCATATCTCTAAGAT
Found at i:36816277 original size:54 final size:54
Alignment explanation
Indices: 36815430--36816257 Score: 1647
Period size: 54 Copynumber: 15.3 Consensus size: 54
36815420 AATCATATCT
36815430 TCTAAGATTGCATATCATATCTAAGATTGCAATCATATCTAAGGTTGTATCATA
1 TCTAAGATTGCATATCATATCTAAGATTGCAATCATATCTAAGGTTGTATCATA
36815484 TCTAAGATTGCATATCATATCTAAGATTGCAATCATATCTAAGGTTGTATCATA
1 TCTAAGATTGCATATCATATCTAAGATTGCAATCATATCTAAGGTTGTATCATA
36815538 TCTAAGATTGCATATCATATCTAAGATTGCAATCATATCTAAGGTTGTATCATA
1 TCTAAGATTGCATATCATATCTAAGATTGCAATCATATCTAAGGTTGTATCATA
36815592 TCTAAGATTGCATATCATATCTAAGATTGCAATCATATCTAAGGTTGTATCATA
1 TCTAAGATTGCATATCATATCTAAGATTGCAATCATATCTAAGGTTGTATCATA
36815646 TCTAAGATTGCATATCATATCTAAGATTGCAATCATATCTAAGGTTGTATCATA
1 TCTAAGATTGCATATCATATCTAAGATTGCAATCATATCTAAGGTTGTATCATA
36815700 TCTAAGATTGCATATCATATCTAAGATTGCAATCATATCTAAGGTTGTATCATA
1 TCTAAGATTGCATATCATATCTAAGATTGCAATCATATCTAAGGTTGTATCATA
36815754 TCTAAGATTGCATATCATATCTAAGATTGCAATCATATCTAAGGTTGTATCATA
1 TCTAAGATTGCATATCATATCTAAGATTGCAATCATATCTAAGGTTGTATCATA
36815808 TCTAAGATTGCATATCATATCTAAGATTGCAATCATATCTAAGGTTGTATCATA
1 TCTAAGATTGCATATCATATCTAAGATTGCAATCATATCTAAGGTTGTATCATA
36815862 TCTAAGATTGCATATCATATCTAAGATTGCAATCATATCTAAGGTTGTATCATA
1 TCTAAGATTGCATATCATATCTAAGATTGCAATCATATCTAAGGTTGTATCATA
36815916 TCTAAGATTGCATATCATATCTAAGATTGCAATCATATCTAAGGTTGTATCATA
1 TCTAAGATTGCATATCATATCTAAGATTGCAATCATATCTAAGGTTGTATCATA
36815970 TCTAAGATTGCATATCATATCTAAGATTGCAATCATATCTAAGGTTGTATCATA
1 TCTAAGATTGCATATCATATCTAAGATTGCAATCATATCTAAGGTTGTATCATA
36816024 TCTAAGATTGCATATCATATCTAAGATTGCAATCATATCTAAGGTTGTATCATA
1 TCTAAGATTGCATATCATATCTAAGATTGCAATCATATCTAAGGTTGTATCATA
36816078 TCTAAGATTGCATATCATATCTAAGATTGCAATCATATCTAAGGTTGTATCATA
1 TCTAAGATTGCATATCATATCTAAGATTGCAATCATATCTAAGGTTGTATCATA
36816132 TCTAAGATTGCATATCATATCTAAGATTGCAATCATATCTAAGGTTGTATCATA
1 TCTAAGATTGCATATCATATCTAAGATTGCAATCATATCTAAGGTTGTATCATA
*
36816186 TCTAAGATTGCATATCATATCTAAGATTGCAATCATATCTAAGGATGTATCATA
1 TCTAAGATTGCATATCATATCTAAGATTGCAATCATATCTAAGGTTGTATCATA
36816240 TCTAAGATTGCATATCAT
1 TCTAAGATTGCATATCAT
36816258 TGAAGATTAT
Statistics
Matches: 773, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
54 773 1.00
ACGTcount: A:0.35, C:0.15, G:0.13, T:0.37
Consensus pattern (54 bp):
TCTAAGATTGCATATCATATCTAAGATTGCAATCATATCTAAGGTTGTATCATA
Found at i:36816687 original size:14 final size:15
Alignment explanation
Indices: 36816660--36816689 Score: 53
Period size: 14 Copynumber: 2.1 Consensus size: 15
36816650 TTTATTTCTT
36816660 TCCTTAATTGCCTTC
1 TCCTTAATTGCCTTC
36816675 TCCTTAA-TGCCTTC
1 TCCTTAATTGCCTTC
36816689 T
1 T
36816690 TTTAATTCAT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 8 0.53
15 7 0.47
ACGTcount: A:0.13, C:0.33, G:0.07, T:0.47
Consensus pattern (15 bp):
TCCTTAATTGCCTTC
Found at i:36820942 original size:275 final size:275
Alignment explanation
Indices: 36820451--36820999 Score: 1026
Period size: 275 Copynumber: 2.0 Consensus size: 275
36820441 GGGCGCCCGA
* *
36820451 AAGTGTTGCACGAGGAAGGTGTTCAGTAGTATGGAGAGGACTTGCCAAGGTACGACCCGTATTGA
1 AAGTGTTGCACGAGGAAGGTGTTCAGCAGTATAGAGAGGACTTGCCAAGGTACGACCCGTATTGA
36820516 GAGAGAATTTATATTGGTCTATTTGGACCGAGAATTCTGTCTACCGTTGGTGATCATCCACTCAT
66 GAGAGAATTTATATTGGTCTATTTGGACCGAGAATTCTGTCTACCGTTGGTGATCATCCACTCAT
**
36820581 GTACCTTCTCAAATCAATCTTGAAATTCGTTAAACGTTTGCAGGTTGCTACTTGGCCAGCTCGTC
131 GTACCTTCTCAAATCAATCTTGAAATTCGTTAAACGTTTGCAGGTTGCTACTTGGCCAGCTCAAC
*
36820646 CTCAGCCTTGATAAGAAGGATTCATTTGTTTTTAGAAACTATAGTCCAATGGCAAACCAAGTGTA
196 CTCAGCCTTGATAAGAAGGATTCATTTGTTTTTAGAAACAATAGTCCAATGGCAAACCAAGTGTA
36820711 TTTCGAGAAAGAGGG
261 TTTCGAGAAAGAGGG
*
36820726 AAGTGTTGCACGAGGAAGGTGTTCAGCAGTATAGAGAGGACTTGCTAAGGTACGACCCGTATTGA
1 AAGTGTTGCACGAGGAAGGTGTTCAGCAGTATAGAGAGGACTTGCCAAGGTACGACCCGTATTGA
36820791 GAGAGAATTTATATTGGTCTATTTGGACCGAGAATTCTGTCTACCGTTGGTGATCATCCACTCAT
66 GAGAGAATTTATATTGGTCTATTTGGACCGAGAATTCTGTCTACCGTTGGTGATCATCCACTCAT
36820856 GTACCTTCTCAAATCAATCTTGAAATTCGTTAAACGTTTGCAGGTTGCTACTTGGCCAGCTCAAC
131 GTACCTTCTCAAATCAATCTTGAAATTCGTTAAACGTTTGCAGGTTGCTACTTGGCCAGCTCAAC
*
36820921 CTCAGCCTTGATAAGAAGGATTCATTTGTTTTTAGAAACAATAGTCCAATTGCAAACCAAGTGTA
196 CTCAGCCTTGATAAGAAGGATTCATTTGTTTTTAGAAACAATAGTCCAATGGCAAACCAAGTGTA
*
36820986 TTTCGAGAGAGAGG
261 TTTCGAGAAAGAGG
36821000 AAAAAAGTTG
Statistics
Matches: 266, Mismatches: 8, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
275 266 1.00
ACGTcount: A:0.28, C:0.18, G:0.23, T:0.30
Consensus pattern (275 bp):
AAGTGTTGCACGAGGAAGGTGTTCAGCAGTATAGAGAGGACTTGCCAAGGTACGACCCGTATTGA
GAGAGAATTTATATTGGTCTATTTGGACCGAGAATTCTGTCTACCGTTGGTGATCATCCACTCAT
GTACCTTCTCAAATCAATCTTGAAATTCGTTAAACGTTTGCAGGTTGCTACTTGGCCAGCTCAAC
CTCAGCCTTGATAAGAAGGATTCATTTGTTTTTAGAAACAATAGTCCAATGGCAAACCAAGTGTA
TTTCGAGAAAGAGGG
Found at i:36821136 original size:61 final size:61
Alignment explanation
Indices: 36821041--36821158 Score: 227
Period size: 61 Copynumber: 1.9 Consensus size: 61
36821031 CTTTAAATAG
36821041 GAATACAGAGGTCCAGGTGTTTGTTATTTTCCCTGAGGAGAGATGTTACATGAATTTATAA
1 GAATACAGAGGTCCAGGTGTTTGTTATTTTCCCTGAGGAGAGATGTTACATGAATTTATAA
*
36821102 GAATACAGAGGTCCAGGTGTTTGTTATTTTCCCTGAGGAGAGATGTTAGATGAATTT
1 GAATACAGAGGTCCAGGTGTTTGTTATTTTCCCTGAGGAGAGATGTTACATGAATTT
36821159 GGGTTTGATA
Statistics
Matches: 56, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
61 56 1.00
ACGTcount: A:0.28, C:0.11, G:0.26, T:0.35
Consensus pattern (61 bp):
GAATACAGAGGTCCAGGTGTTTGTTATTTTCCCTGAGGAGAGATGTTACATGAATTTATAA
Found at i:36827402 original size:19 final size:19
Alignment explanation
Indices: 36827374--36827410 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
36827364 TATATTTTAT
*
36827374 TTATAAATTTTATTATATG
1 TTATAAATTTTACTATATG
*
36827393 TTATATATTTTACTATAT
1 TTATAAATTTTACTATAT
36827411 ATATTATTCC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.35, C:0.03, G:0.03, T:0.59
Consensus pattern (19 bp):
TTATAAATTTTACTATATG
Found at i:36831982 original size:27 final size:27
Alignment explanation
Indices: 36831934--36832092 Score: 164
Period size: 27 Copynumber: 5.9 Consensus size: 27
36831924 GCGAGGCTGC
* * *
36831934 CAGATATTGTGACGAAGTCACCAGATA
1 CAGATATTGTGGCAAAGCCACCAGATA
*
36831961 CAGATATTGTGGTAAAGCCACCAGA-A
1 CAGATATTGTGGCAAAGCCACCAGATA
* *
36831987 CAAATATATGTGGCAGAGCCACCAGAT-
1 CAGATAT-TGTGGCAAAGCCACCAGATA
* *
36832014 CAGATAATTGTGGCATAGCCACCAG-GA
1 CAGAT-ATTGTGGCAAAGCCACCAGATA
*
36832041 CAGATATATGTGGCAGAGCCACCAGAT-
1 CAGATAT-TGTGGCAAAGCCACCAGATA
*
36832068 CAGATAATTGTGGCATAGCCACCAG
1 CAGAT-ATTGTGGCAAAGCCACCAG
36832093 GACGCTTCCT
Statistics
Matches: 112, Mismatches: 13, Indels: 14
0.81 0.09 0.10
Matches are distributed among these distances:
26 9 0.08
27 99 0.88
28 4 0.04
ACGTcount: A:0.35, C:0.21, G:0.24, T:0.19
Consensus pattern (27 bp):
CAGATATTGTGGCAAAGCCACCAGATA
Found at i:36832093 original size:54 final size:54
Alignment explanation
Indices: 36831952--36832095 Score: 236
Period size: 54 Copynumber: 2.7 Consensus size: 54
36831942 GTGACGAAGT
* * *
36831952 CACCAGATACAGAT-ATTGTGGTAAAGCCACCAGAACAAATATATGTGGCAGAGC
1 CACCAGAT-CAGATAATTGTGGCATAGCCACCAGGACAAATATATGTGGCAGAGC
*
36832006 CACCAGATCAGATAATTGTGGCATAGCCACCAGGACAGATATATGTGGCAGAGC
1 CACCAGATCAGATAATTGTGGCATAGCCACCAGGACAAATATATGTGGCAGAGC
36832060 CACCAGATCAGATAATTGTGGCATAGCCACCAGGAC
1 CACCAGATCAGATAATTGTGGCATAGCCACCAGGAC
36832096 GCTTCCTCCA
Statistics
Matches: 85, Mismatches: 4, Indels: 2
0.93 0.04 0.02
Matches are distributed among these distances:
53 5 0.06
54 80 0.94
ACGTcount: A:0.35, C:0.23, G:0.24, T:0.18
Consensus pattern (54 bp):
CACCAGATCAGATAATTGTGGCATAGCCACCAGGACAAATATATGTGGCAGAGC
Found at i:36833722 original size:26 final size:26
Alignment explanation
Indices: 36833691--36833797 Score: 162
Period size: 26 Copynumber: 4.2 Consensus size: 26
36833681 TGAAATGCCC
36833691 ATCATGGAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAAACCATT
*
36833717 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAAACCATT
** * *
36833743 ATCATGGATTAGTTACCTAATCCATT
1 ATCATGGAACATTTACCTAAACCATT
36833769 ATCATGGAACATTTACCT-AACCATT
1 ATCATGGAACATTTACCTAAACCATT
36833794 ATCA
1 ATCA
36833798 ATTTGTACCA
Statistics
Matches: 72, Mismatches: 9, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
25 10 0.14
26 62 0.86
ACGTcount: A:0.36, C:0.23, G:0.08, T:0.33
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAAACCATT
Found at i:36834991 original size:37 final size:37
Alignment explanation
Indices: 36834932--36835040 Score: 191
Period size: 37 Copynumber: 2.9 Consensus size: 37
36834922 AGCTCAGACG
* *
36834932 AAATCTCCACACGAAGTTATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
36834969 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
36835006 TAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
36835041 ATATATTTCC
Statistics
Matches: 69, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 69 1.00
ACGTcount: A:0.27, C:0.31, G:0.19, T:0.23
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:36835254 original size:47 final size:47
Alignment explanation
Indices: 36835202--36835387 Score: 264
Period size: 47 Copynumber: 4.0 Consensus size: 47
36835192 TTTCACACTA
* * * *
36835202 GCCATTCGGCTTTACCACATATATGCATGTTCATATTCACCACATTG
1 GCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTG
* * *
36835249 GCCATTCGGCCTTATCACACATATGCGTGCTCACATTCATCACATTG
1 GCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTG
*
36835296 GCCATTCGGCCTTATCACATATATGCATGTTCATATTCATCACATTG
1 GCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTG
* * **
36835343 GCTATTCGGCCTTATCTCATATATGCACATTCACATTCATCACAT
1 GCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACAT
36835388 AAAATCCTAA
Statistics
Matches: 123, Mismatches: 16, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
47 123 1.00
ACGTcount: A:0.25, C:0.28, G:0.12, T:0.34
Consensus pattern (47 bp):
GCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTG
Found at i:36840666 original size:40 final size:40
Alignment explanation
Indices: 36840621--36841327 Score: 1164
Period size: 40 Copynumber: 17.6 Consensus size: 40
36840611 CAAGCTCAAT
* * * * *
36840621 TGCCTTCGGGTCTTAACCCGGGTATAGCAACTCGCACGAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
*
36840661 TGCCTTCGGGTCTTAGCCCGGATATATCAACTT-GCACAAT
1 TGCCTTCGGGTCTTAGCCCGGATATATCAA-TTCGCACAAA
36840701 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
* * *
36840741 CGCCGTCGGGTCTTAGCCCGGATATATCAGTTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
*
36840781 TGCCTTCGGGTCTTATCCCGGATATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGG--ATATATCAATTCGCACAAA
*
36840823 TGCCTTCGGGTCTTATCCCGGATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
*
36840863 TGCCTTCGGGTCTTAGCCCGGATATATCAAATCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
*
36840903 TGCCTTCGGGTCTTAACCCGGATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
36840943 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
*
36840983 TGCCTTCAGGTCTTAGCCCGGATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
*
36841023 TGCCTTCAGGTCTTAGCCCGGATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
*
36841063 TGCCTTCGGGTCTTAACCCGGATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
*
36841103 TGCCTTCAGGTCTTAGCCCGGATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
* * *
36841143 CGCCGTCGGGTCTTAGCCCGGATATATCAGTTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
*
36841183 TGCCTTCGGGTCTTATCCCGGATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
* * *
36841223 TGCCTTTGGGTCTTAACCCGGATATATCAATTCGTACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
36841263 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
36841303 TGCCTTCGGGTCTTAGCCCGGATAT
1 TGCCTTCGGGTCTTAGCCCGGATAT
36841328 CATTCAAATG
Statistics
Matches: 625, Mismatches: 38, Indels: 8
0.93 0.06 0.01
Matches are distributed among these distances:
39 2 0.00
40 583 0.93
41 1 0.00
42 39 0.06
ACGTcount: A:0.25, C:0.28, G:0.20, T:0.28
Consensus pattern (40 bp):
TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
Found at i:36847286 original size:27 final size:27
Alignment explanation
Indices: 36847256--36847396 Score: 173
Period size: 27 Copynumber: 5.2 Consensus size: 27
36847246 TTGACGAAGT
36847256 CACCAGATACAGATATTGTGGCAGAGC
1 CACCAGATACAGATATTGTGGCAGAGC
*
36847283 CACCAGA-ACAGATATATGTGGCAGTGC
1 CACCAGATACAGATAT-TGTGGCAGAGC
**
36847310 CACCAGAT-CAGATAATTGTGGCCTAGC
1 CACCAGATACAGAT-ATTGTGGCAGAGC
*
36847337 CACCAG-GACAGATATATGTGGCAGAGC
1 CACCAGATACAGATAT-TGTGGCAGAGC
*
36847364 CACCAGAT-CAGATAATTGTGGCATAGC
1 CACCAGATACAGAT-ATTGTGGCAGAGC
36847391 CACCAG
1 CACCAG
36847397 GACGCTTCCT
Statistics
Matches: 98, Mismatches: 9, Indels: 14
0.81 0.07 0.12
Matches are distributed among these distances:
26 10 0.10
27 84 0.86
28 4 0.04
ACGTcount: A:0.33, C:0.24, G:0.25, T:0.18
Consensus pattern (27 bp):
CACCAGATACAGATATTGTGGCAGAGC
Found at i:36847397 original size:54 final size:54
Alignment explanation
Indices: 36847256--36847399 Score: 236
Period size: 54 Copynumber: 2.7 Consensus size: 54
36847246 TTGACGAAGT
* * *
36847256 CACCAGATACAGAT-ATTGTGGCAGAGCCACCAGAACAGATATATGTGGCAGTGC
1 CACCAGAT-CAGATAATTGTGGCATAGCCACCAGGACAGATATATGTGGCAGAGC
*
36847310 CACCAGATCAGATAATTGTGGCCTAGCCACCAGGACAGATATATGTGGCAGAGC
1 CACCAGATCAGATAATTGTGGCATAGCCACCAGGACAGATATATGTGGCAGAGC
36847364 CACCAGATCAGATAATTGTGGCATAGCCACCAGGAC
1 CACCAGATCAGATAATTGTGGCATAGCCACCAGGAC
36847400 GCTTCCTCCA
Statistics
Matches: 84, Mismatches: 5, Indels: 2
0.92 0.05 0.02
Matches are distributed among these distances:
53 5 0.06
54 79 0.94
ACGTcount: A:0.33, C:0.24, G:0.25, T:0.18
Consensus pattern (54 bp):
CACCAGATCAGATAATTGTGGCATAGCCACCAGGACAGATATATGTGGCAGAGC
Found at i:36849023 original size:26 final size:26
Alignment explanation
Indices: 36848994--36849153 Score: 248
Period size: 26 Copynumber: 6.2 Consensus size: 26
36848984 TTAAATGCCC
* *
36848994 ATCATGGAATATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAATCCATT
* * *
36849020 ATCATGAAACATTTACGTAACCCATT
1 ATCATGGAACATTTACCTAATCCATT
*
36849046 ATCATGGAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAATCCATT
*
36849072 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAATCCATT
*
36849098 ATCATGGAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAATCCATT
36849124 ATCATGGAACATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAATCCATT
36849150 ATCA
1 ATCA
36849154 ATTTGTACCA
Statistics
Matches: 121, Mismatches: 13, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 121 1.00
ACGTcount: A:0.36, C:0.22, G:0.07, T:0.34
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAATCCATT
Found at i:36849051 original size:52 final size:52
Alignment explanation
Indices: 36848994--36849153 Score: 284
Period size: 52 Copynumber: 3.1 Consensus size: 52
36848984 TTAAATGCCC
* * *
36848994 ATCATGGAATATTTACCTAAACCATTATCATGAAACATTTACGTAACCCATT
1 ATCATGGAATATTTACCTAATCCATTATCATGGAACATTTACCTAACCCATT
36849046 ATCATGGAATATTTACCTAATCCATTATCATGGAACATTTACCTAACCCATT
1 ATCATGGAATATTTACCTAATCCATTATCATGGAACATTTACCTAACCCATT
*
36849098 ATCATGGAATATTTACCTAATCCATTATCATGGAACATTTACCTAATCCATT
1 ATCATGGAATATTTACCTAATCCATTATCATGGAACATTTACCTAACCCATT
36849150 ATCA
1 ATCA
36849154 ATTTGTACCA
Statistics
Matches: 104, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
52 104 1.00
ACGTcount: A:0.36, C:0.22, G:0.07, T:0.34
Consensus pattern (52 bp):
ATCATGGAATATTTACCTAATCCATTATCATGGAACATTTACCTAACCCATT
Found at i:36855012 original size:46 final size:46
Alignment explanation
Indices: 36854959--36855180 Score: 270
Period size: 46 Copynumber: 4.8 Consensus size: 46
36854949 TATTTGGGCA
* *
36854959 TCCGAACTCGTTGAGTTGAGTTCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
36855005 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
* * *** * * * * *
36855051 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTA-ACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATGGATGCGA-ACG
36855098 TCC-AAGCTCGTTGAGTTGAG-CCTGAGTTCACTTATGGATGCGAACG
1 TCCGAA-CTCGTTGAGTTGAGTCC-GAGTTCACTTATGGATGCGAACG
*
36855144 CCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
36855181 GCGGGTTACA
Statistics
Matches: 146, Mismatches: 23, Indels: 14
0.80 0.13 0.08
Matches are distributed among these distances:
46 112 0.77
47 34 0.23
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.28
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
Found at i:36857318 original size:54 final size:54
Alignment explanation
Indices: 36857240--36858136 Score: 1751
Period size: 54 Copynumber: 16.6 Consensus size: 54
36857230 CGAAGTCACT
* * *
36857240 AGATACAGAT-ATTGTGGCAGAGCCACCAGAACAGATATATGTGGCAGTGCCACC
1 AGAT-CAGATAATTGTGGCATAGCCACCAGGACAGATATATGTGGCAGAGCCACC
36857294 AGATCAGATAATTGTGGCATAGCCACCAGGACAGATATATGTGGCAGAGCCACC
1 AGATCAGATAATTGTGGCATAGCCACCAGGACAGATATATGTGGCAGAGCCACC
36857348 AGATCAGATAATTGTGGCATAGCCACCAGGACAGATATATGTGGCAGAGCCACC
1 AGATCAGATAATTGTGGCATAGCCACCAGGACAGATATATGTGGCAGAGCCACC
36857402 AGATCAGATAATTGTGGCATAGCCACCAGGACAGATATATGTGGCAGAGCCACC
1 AGATCAGATAATTGTGGCATAGCCACCAGGACAGATATATGTGGCAGAGCCACC
36857456 AGATCAGATAATTGTGGCATAGCCACCAGGACAGATATATGTGGCAGAGCCACC
1 AGATCAGATAATTGTGGCATAGCCACCAGGACAGATATATGTGGCAGAGCCACC
36857510 AGATCAGATAATTGTGGCATAGCCACCAGGACAGATATATGTGGCAGAGCCACC
1 AGATCAGATAATTGTGGCATAGCCACCAGGACAGATATATGTGGCAGAGCCACC
36857564 AGATCAGATAATTGTGGCATAGCCACCAGGACAGATATATGTGGCAGAGCCACC
1 AGATCAGATAATTGTGGCATAGCCACCAGGACAGATATATGTGGCAGAGCCACC
36857618 AGATCAGATAATTGTGGCATAGCCACCAGGACAGATATATGTGGCAGAGCCACC
1 AGATCAGATAATTGTGGCATAGCCACCAGGACAGATATATGTGGCAGAGCCACC
36857672 AGATCAGATAATTGTGGCATAGCCACCAGGACAGATATATGTGGCAGAGCCACC
1 AGATCAGATAATTGTGGCATAGCCACCAGGACAGATATATGTGGCAGAGCCACC
36857726 AGATCAGATAATTGTGGCATAGCCACCAGGACAGATATATGTGGCAGAGCCACC
1 AGATCAGATAATTGTGGCATAGCCACCAGGACAGATATATGTGGCAGAGCCACC
36857780 AGATCAGATAATTGTGGCATAGCCACCAGGACAGATATATGTGGCAGAGCCACC
1 AGATCAGATAATTGTGGCATAGCCACCAGGACAGATATATGTGGCAGAGCCACC
36857834 AGATCAGATAATTGTGGCATAGCCACCAGGACAGATATATGTGGCAGAGCCACC
1 AGATCAGATAATTGTGGCATAGCCACCAGGACAGATATATGTGGCAGAGCCACC
36857888 AGATCAGATAATTGTGGCATAGCCACCAGGACAGATATATGTGGCAGAGCCACC
1 AGATCAGATAATTGTGGCATAGCCACCAGGACAGATATATGTGGCAGAGCCACC
36857942 AGATCAGATAATTGTGGCATAGCCACCAGGACAGATATATGTGGCAGAGCCACC
1 AGATCAGATAATTGTGGCATAGCCACCAGGACAGATATATGTGGCAGAGCCACC
36857996 AGATCAGATAATTGTGGCATAGCCACCAGGACAGATATATGTGGCAGAGCCACC
1 AGATCAGATAATTGTGGCATAGCCACCAGGACAGATATATGTGGCAGAGCCACC
36858050 AGATCAGATAATTGTGGCATAGCCACCAGGACAGATATATGTGGCAGAGCCACC
1 AGATCAGATAATTGTGGCATAGCCACCAGGACAGATATATGTGGCAGAGCCACC
36858104 AGATCAGATAATTGTGGCATAGCCACCAGGACA
1 AGATCAGATAATTGTGGCATAGCCACCAGGACA
36858137 CTTCCTCCAT
Statistics
Matches: 839, Mismatches: 3, Indels: 2
0.99 0.00 0.00
Matches are distributed among these distances:
53 5 0.01
54 834 0.99
ACGTcount: A:0.33, C:0.22, G:0.26, T:0.19
Consensus pattern (54 bp):
AGATCAGATAATTGTGGCATAGCCACCAGGACAGATATATGTGGCAGAGCCACC
Found at i:36858538 original size:8 final size:8
Alignment explanation
Indices: 36858522--36858551 Score: 51
Period size: 8 Copynumber: 3.8 Consensus size: 8
36858512 CTCAAAATAC
36858522 CGGCTTTT
1 CGGCTTTT
*
36858530 CGGCATTT
1 CGGCTTTT
36858538 CGGCTTTT
1 CGGCTTTT
36858546 CGGCTT
1 CGGCTT
36858552 GTGCCGATCT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
8 20 1.00
ACGTcount: A:0.03, C:0.27, G:0.27, T:0.43
Consensus pattern (8 bp):
CGGCTTTT
Found at i:36859358 original size:100 final size:100
Alignment explanation
Indices: 36859232--36859432 Score: 402
Period size: 100 Copynumber: 2.0 Consensus size: 100
36859222 TTGTCATTTG
36859232 TATGCGAAATTATTAAATAGGACTTATGTGAGAAAATTTAGAAATGTGTTAGGCAAATGTTGAAG
1 TATGCGAAATTATTAAATAGGACTTATGTGAGAAAATTTAGAAATGTGTTAGGCAAATGTTGAAG
36859297 TGACTTATTAATGCATGTTATAAAAATGATGGGTT
66 TGACTTATTAATGCATGTTATAAAAATGATGGGTT
36859332 TATGCGAAATTATTAAATAGGACTTATGTGAGAAAATTTAGAAATGTGTTAGGCAAATGTTGAAG
1 TATGCGAAATTATTAAATAGGACTTATGTGAGAAAATTTAGAAATGTGTTAGGCAAATGTTGAAG
36859397 TGACTTATTAATGCATGTTATAAAAATGATGGGTT
66 TGACTTATTAATGCATGTTATAAAAATGATGGGTT
36859432 T
1 T
36859433 GCATGTCAAA
Statistics
Matches: 101, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
100 101 1.00
ACGTcount: A:0.38, C:0.05, G:0.22, T:0.35
Consensus pattern (100 bp):
TATGCGAAATTATTAAATAGGACTTATGTGAGAAAATTTAGAAATGTGTTAGGCAAATGTTGAAG
TGACTTATTAATGCATGTTATAAAAATGATGGGTT
Found at i:36860049 original size:40 final size:41
Alignment explanation
Indices: 36860004--36860155 Score: 182
Period size: 40 Copynumber: 3.8 Consensus size: 41
36859994 GATTTTTTNN
* * *
36860004 GAAGGGCTTTTGAGCCAGTGTCATAA-CCGAACCTAGTTTC
1 GAAGGGCCTTCGAGCCAATGTCATAATCCGAACCTAGTTTC
* * * * *
36860044 GAAGGGCCTTCGGGCCAATGTCATAATCCGAGCTTGGTCTC
1 GAAGGGCCTTCGAGCCAATGTCATAATCCGAACCTAGTTTC
* * *
36860085 GAAGGGCTTTTGAGCCAGTGTCATAA-CCGAACCTAGTTTC
1 GAAGGGCCTTCGAGCCAATGTCATAATCCGAACCTAGTTTC
*
36860125 GAAGGGCCTTCGGGCCAATGTCATAATCCGA
1 GAAGGGCCTTCGAGCCAATGTCATAATCCGA
36860156 GCTTGGTCTC
Statistics
Matches: 90, Mismatches: 20, Indels: 3
0.80 0.18 0.03
Matches are distributed among these distances:
40 54 0.60
41 36 0.40
ACGTcount: A:0.24, C:0.24, G:0.27, T:0.25
Consensus pattern (41 bp):
GAAGGGCCTTCGAGCCAATGTCATAATCCGAACCTAGTTTC
Found at i:36860090 original size:41 final size:41
Alignment explanation
Indices: 36860042--36860168 Score: 175
Period size: 41 Copynumber: 3.1 Consensus size: 41
36860032 GAACCTAGTT
36860042 TCGAAGGGCCTTCGGGCCAATGTCATAATCCGAGCTTGGTC
1 TCGAAGGGCCTTCGGGCCAATGTCATAATCCGAGCTTGGTC
* * * * * * * *
36860083 TCGAAGGGCTTTTGAGCCAGTGTCATAA-CCGAACCTAGTT
1 TCGAAGGGCCTTCGGGCCAATGTCATAATCCGAGCTTGGTC
36860123 TCGAAGGGCCTTCGGGCCAATGTCATAATCCGAGCTTGGTC
1 TCGAAGGGCCTTCGGGCCAATGTCATAATCCGAGCTTGGTC
36860164 TCGAA
1 TCGAA
36860169 AGGCTTTTTG
Statistics
Matches: 69, Mismatches: 16, Indels: 2
0.79 0.18 0.02
Matches are distributed among these distances:
40 32 0.46
41 37 0.54
ACGTcount: A:0.22, C:0.25, G:0.28, T:0.25
Consensus pattern (41 bp):
TCGAAGGGCCTTCGGGCCAATGTCATAATCCGAGCTTGGTC
Found at i:36860139 original size:81 final size:81
Alignment explanation
Indices: 36860004--36860176 Score: 337
Period size: 81 Copynumber: 2.1 Consensus size: 81
36859994 GATTTTTTNN
36860004 GAAGGGCTTTTGAGCCAGTGTCATAACCGAACCTAGTTTCGAAGGGCCTTCGGGCCAATGTCATA
1 GAAGGGCTTTTGAGCCAGTGTCATAACCGAACCTAGTTTCGAAGGGCCTTCGGGCCAATGTCATA
36860069 ATCCGAGCTTGGTCTC
66 ATCCGAGCTTGGTCTC
36860085 GAAGGGCTTTTGAGCCAGTGTCATAACCGAACCTAGTTTCGAAGGGCCTTCGGGCCAATGTCATA
1 GAAGGGCTTTTGAGCCAGTGTCATAACCGAACCTAGTTTCGAAGGGCCTTCGGGCCAATGTCATA
36860150 ATCCGAGCTTGGTCTC
66 ATCCGAGCTTGGTCTC
*
36860166 GAAAGGCTTTT
1 GAAGGGCTTTT
36860177 TGAGTCAGCG
Statistics
Matches: 91, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
81 91 1.00
ACGTcount: A:0.23, C:0.24, G:0.27, T:0.27
Consensus pattern (81 bp):
GAAGGGCTTTTGAGCCAGTGTCATAACCGAACCTAGTTTCGAAGGGCCTTCGGGCCAATGTCATA
ATCCGAGCTTGGTCTC
Found at i:36866770 original size:61 final size:61
Alignment explanation
Indices: 36866690--36866826 Score: 238
Period size: 61 Copynumber: 2.2 Consensus size: 61
36866680 TGAAACAGGC
* * *
36866690 ATGTGTGAAAGTTTCATGCTTCAATTTTGTCATTTGTATGCGAAATTATTAAATAGGACTT
1 ATGTGAGAAAATTTAATGCTTCAATTTTGTCATTTGTATGCGAAATTATTAAATAGGACTT
*
36866751 ATGTGATAAAATTTAATGCTTCAATTTTGTCATTTGTATGCGAAATTATTAAATAGGACTT
1 ATGTGAGAAAATTTAATGCTTCAATTTTGTCATTTGTATGCGAAATTATTAAATAGGACTT
36866812 ATGTGAGAAAATTTA
1 ATGTGAGAAAATTTA
36866827 GAAATGTGTT
Statistics
Matches: 71, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
61 71 1.00
ACGTcount: A:0.34, C:0.08, G:0.17, T:0.42
Consensus pattern (61 bp):
ATGTGAGAAAATTTAATGCTTCAATTTTGTCATTTGTATGCGAAATTATTAAATAGGACTT
Found at i:36870122 original size:26 final size:26
Alignment explanation
Indices: 36870091--36870458 Score: 592
Period size: 26 Copynumber: 14.2 Consensus size: 26
36870081 TGAAATGCCC
*
36870091 ATCATGGAACATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAACCCATT
36870117 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* *
36870143 ATCATGGAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAACCCATT
36870169 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* *
36870195 ATCATGGAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAACCCATT
36870221 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* *
36870247 ATCATGGAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAACCCATT
36870273 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* *
36870299 ATCATGGAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAACCCATT
36870325 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* *
36870351 ATCATGGAATATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAACCCATT
36870377 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
** * *
36870403 ATCATGGATTAGTTACCTAATCCATT
1 ATCATGGAACATTTACCTAACCCATT
*
36870429 ATCATGGAACATTTATCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
36870455 ATCA
1 ATCA
36870459 ATTTGTACCA
Statistics
Matches: 312, Mismatches: 30, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 312 1.00
ACGTcount: A:0.35, C:0.23, G:0.08, T:0.34
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:36870163 original size:52 final size:52
Alignment explanation
Indices: 36870091--36870458 Score: 691
Period size: 52 Copynumber: 7.1 Consensus size: 52
36870081 TGAAATGCCC
*
36870091 ATCATGGAACATTTACCTAATCCATTATCATGGAACATTTACCTAACCCATT
1 ATCATGGAATATTTACCTAATCCATTATCATGGAACATTTACCTAACCCATT
36870143 ATCATGGAATATTTACCTAATCCATTATCATGGAACATTTACCTAACCCATT
1 ATCATGGAATATTTACCTAATCCATTATCATGGAACATTTACCTAACCCATT
36870195 ATCATGGAATATTTACCTAATCCATTATCATGGAACATTTACCTAACCCATT
1 ATCATGGAATATTTACCTAATCCATTATCATGGAACATTTACCTAACCCATT
36870247 ATCATGGAATATTTACCTAATCCATTATCATGGAACATTTACCTAACCCATT
1 ATCATGGAATATTTACCTAATCCATTATCATGGAACATTTACCTAACCCATT
36870299 ATCATGGAATATTTACCTAATCCATTATCATGGAACATTTACCTAACCCATT
1 ATCATGGAATATTTACCTAATCCATTATCATGGAACATTTACCTAACCCATT
*
36870351 ATCATGGAATATTTACCTAAACCATTATCATGGAACATTTACCTAACCCATT
1 ATCATGGAATATTTACCTAATCCATTATCATGGAACATTTACCTAACCCATT
* * *
36870403 ATCATGGATTAGTTACCTAATCCATTATCATGGAACATTTATCTAACCCATT
1 ATCATGGAATATTTACCTAATCCATTATCATGGAACATTTACCTAACCCATT
36870455 ATCA
1 ATCA
36870459 ATTTGTACCA
Statistics
Matches: 310, Mismatches: 6, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
52 310 1.00
ACGTcount: A:0.35, C:0.23, G:0.08, T:0.34
Consensus pattern (52 bp):
ATCATGGAATATTTACCTAATCCATTATCATGGAACATTTACCTAACCCATT
Found at i:36871379 original size:94 final size:94
Alignment explanation
Indices: 36871255--36871440 Score: 327
Period size: 94 Copynumber: 2.0 Consensus size: 94
36871245 TTGTTCCAAG
*
36871255 ATGAAATTTTTGTAAGAAAGAGCTGGTAGTATTTACCGACTCCAACCCTACTTGTGTTGTACTGC
1 ATGAAATTTTTGTAAGAAAGAGCTGGTAGTATTTACCGACTCCAACCCTACTTGTGCTGTACTGC
*
36871320 ATTTCATTTTATTTCTTTCCTTAATTGTA
66 ATTTCAGTTTATTTCTTTCCTTAATTGTA
* * *
36871349 ATGAGATTTTTGTAAGAAAGAGCTGGTAGTATTTACCGTCTCCCACCCTACTTGTGCTGTACTGC
1 ATGAAATTTTTGTAAGAAAGAGCTGGTAGTATTTACCGACTCCAACCCTACTTGTGCTGTACTGC
36871414 ATTTCAGTTTATTTCTTTCCTTAATTG
66 ATTTCAGTTTATTTCTTTCCTTAATTG
36871441 CCTTCTCCTT
Statistics
Matches: 87, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
94 87 1.00
ACGTcount: A:0.24, C:0.18, G:0.16, T:0.42
Consensus pattern (94 bp):
ATGAAATTTTTGTAAGAAAGAGCTGGTAGTATTTACCGACTCCAACCCTACTTGTGCTGTACTGC
ATTTCAGTTTATTTCTTTCCTTAATTGTA
Found at i:36878201 original size:22 final size:22
Alignment explanation
Indices: 36878165--36878228 Score: 60
Period size: 22 Copynumber: 2.9 Consensus size: 22
36878155 GCAAATACGT
36878165 TTGGCACACAA-CCATAATCAAG
1 TTGGCACA-AAGCCATAATCAAG
* * *
36878187 TTGGCACAGAGCCAT-ATGTAGG
1 TTGGCACAAAGCCATAAT-CAAG
*
36878209 TTGACACAAAGCCATAATCA
1 TTGGCACAAAGCCATAATCA
36878229 GAAGGCTTTA
Statistics
Matches: 33, Mismatches: 6, Indels: 6
0.73 0.13 0.13
Matches are distributed among these distances:
21 3 0.09
22 28 0.85
23 2 0.06
ACGTcount: A:0.38, C:0.23, G:0.19, T:0.20
Consensus pattern (22 bp):
TTGGCACAAAGCCATAATCAAG
Done.