Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr9
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 91122320
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2661692 characters in sequence are not A, C, G, or T
File 116 of 279
Found at i:36878712 original size:27 final size:27
Alignment explanation
Indices: 36878656--36878985 Score: 464
Period size: 27 Copynumber: 12.3 Consensus size: 27
36878646 GGGGAAAAAT
* * * *
36878656 GGTAATTTTACCCCACA-AGGTATCTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
36878682 GGTAATTCCACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
36878709 GGTAATTCTACCTTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * *
36878736 GATAATTTTACCCTACAGGGGTATTGC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
36878763 GATAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * *
36878790 GGTAATTCTACCCTATAGGAGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTC
36878817 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
36878844 GGTAATTTTACCCTACAGGGGTATTGC
1 GGTAATTCTACCCTACAGGGGTATTTC
**
36878871 AATAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
36878898 GGTAATTCTACCCTACAGGGGTATTCC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
36878925 GGTAATTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
36878952 GATAATTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
36878979 GGTAATT
1 GGTAATT
36878986 TCACAAATCA
Statistics
Matches: 270, Mismatches: 33, Indels: 1
0.89 0.11 0.00
Matches are distributed among these distances:
26 14 0.05
27 256 0.95
ACGTcount: A:0.25, C:0.21, G:0.20, T:0.34
Consensus pattern (27 bp):
GGTAATTCTACCCTACAGGGGTATTTC
Found at i:36879000 original size:27 final size:27
Alignment explanation
Indices: 36878970--36879178 Score: 258
Period size: 27 Copynumber: 7.7 Consensus size: 27
36878960 TACCCTACAA
* *
36878970 GGGTATTTCGGTAATTTCACAAA-TCAG
1 GGGTATTTTGGTAATTTTACAAACT-AG
* *
36878997 GGGTATTTCGATAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTTACAAACTAG
* *
36879024 GGATATTTTGGTAATTTTACAAACTAA
1 GGGTATTTTGGTAATTTTACAAACTAG
* *
36879051 GGGTATTTTGGTAATTTTACAAACCAAA
1 GGGTATTTTGGTAATTTTACAAA-CTAG
*
36879079 GGGTATTTTAGTAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTTACAAACTAG
* * * *
36879106 GGGTATTTTAGTAATTTTATAAACCAA
1 GGGTATTTTGGTAATTTTACAAACTAG
* *
36879133 AGGTATTTTGGTAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTACAAACTAG
36879160 GGGTATTTTGGTAATTTTA
1 GGGTATTTTGGTAATTTTA
36879179 TTGATCGATG
Statistics
Matches: 161, Mismatches: 19, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
27 135 0.84
28 26 0.16
ACGTcount: A:0.33, C:0.09, G:0.19, T:0.39
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTACAAACTAG
Found at i:36879031 original size:54 final size:54
Alignment explanation
Indices: 36878943--36879178 Score: 255
Period size: 54 Copynumber: 4.4 Consensus size: 54
36878933 TACCCTACAA
* ** * *
36878943 GGGTATTTCGATAATTCTACCCTA-CAAGGGTATTTCGGTAATTTCACAAA-TCAG
1 GGGTATTTCGATAATTTTA-CAAACCAAGGGTATTTTGGTAATTTTACAAACT-AG
* *
36878997 GGGTATTTCGATAATTTTACAAA-CTAGGGATATTTTGGTAATTTTACAAACTAA
1 GGGTATTTCGATAATTTTACAAACCAAGGG-TATTTTGGTAATTTTACAAACTAG
* * *
36879051 GGGTATTTTGGTAATTTTACAAACCAAAGGGTATTTTAGTAATTTTACAAACTAG
1 GGGTATTTCGATAATTTTACAAACC-AAGGGTATTTTGGTAATTTTACAAACTAG
* * * *
36879106 GGGTATTT-TAGTAATTTTATAAACCAAAGGTATTTTGGTAATTTTACAAACCAG
1 GGGTATTTCGA-TAATTTTACAAACCAAGGGTATTTTGGTAATTTTACAAACTAG
* *
36879160 GGGTATTTTGGTAATTTTA
1 GGGTATTTCGATAATTTTA
36879179 TTGATCGATG
Statistics
Matches: 156, Mismatches: 20, Indels: 12
0.83 0.11 0.06
Matches are distributed among these distances:
53 7 0.04
54 100 0.64
55 45 0.29
56 4 0.03
ACGTcount: A:0.33, C:0.11, G:0.18, T:0.39
Consensus pattern (54 bp):
GGGTATTTCGATAATTTTACAAACCAAGGGTATTTTGGTAATTTTACAAACTAG
Found at i:36879121 original size:109 final size:109
Alignment explanation
Indices: 36878968--36879178 Score: 293
Period size: 109 Copynumber: 1.9 Consensus size: 109
36878958 TCTACCCTAC
* * * *
36878968 AAGGGTATTTCGGTAATTTCACAAATCAGGGGTATTTCGATAATTTTACAAA-CTAGGGATATTT
1 AAGGGTATTTCAGTAATTTCACAAATCAGGGGTATTTAGATAATTTTACAAACCAAAGG-TATTT
*
36879032 TGGTAATTTTACAAACTAAGGGTATTTTGGTAATTTTACAAACCA
65 TGGTAATTTTACAAACCAAGGGTATTTTGGTAATTTTACAAACCA
* * *
36879077 AAGGGTATTTTAGTAATTTTACAAA-CTAGGGGTATTTTAG-TAATTTTATAAACCAAAGGTATT
1 AAGGGTATTTCAGTAATTTCACAAATC-AGGGGTA-TTTAGATAATTTTACAAACCAAAGGTATT
*
36879140 TTGGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTA
64 TTGGTAATTTTACAAACCAAGGGTATTTTGGTAATTTTA
36879179 TTGATCGATG
Statistics
Matches: 90, Mismatches: 9, Indels: 6
0.86 0.09 0.06
Matches are distributed among these distances:
108 1 0.01
109 81 0.90
110 8 0.09
ACGTcount: A:0.34, C:0.09, G:0.18, T:0.39
Consensus pattern (109 bp):
AAGGGTATTTCAGTAATTTCACAAATCAGGGGTATTTAGATAATTTTACAAACCAAAGGTATTTT
GGTAATTTTACAAACCAAGGGTATTTTGGTAATTTTACAAACCA
Found at i:36879192 original size:54 final size:54
Alignment explanation
Indices: 36878967--36879221 Score: 278
Period size: 54 Copynumber: 4.7 Consensus size: 54
36878957 TTCTACCCTA
* * * * * *
36878967 CAAGGGTATTTCGGTAATTTCACAAATCAGGGGTATTTCGATAATTTTACAAA-
1 CAAGGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTATAAAC
* * * *
36879020 CTAGGGATATTTTGGTAATTTTACAAACTAAGGGTATTTTGGTAATTTTACAAAC
1 CAAGGG-TATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTATAAAC
* * *
36879075 CAAAGGGTATTTTAGTAATTTTACAAACTAGGGGTATTTTAGTAATTTTATAAAC
1 C-AAGGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTATAAAC
* ** *
36879130 CAAAGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTATTGAT
1 CAAGGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTATAAAC
* * * ** *
36879184 CGATGGTATTTGGGTAATTTTGTAAACCAAGGGTATTT
1 CAAGGGTATTTTGGTAATTTTACAAACCAGGGGTATTT
36879222 CAATAATTTT
Statistics
Matches: 173, Mismatches: 26, Indels: 5
0.85 0.13 0.02
Matches are distributed among these distances:
53 5 0.03
54 118 0.68
55 46 0.27
56 4 0.02
ACGTcount: A:0.32, C:0.09, G:0.20, T:0.39
Consensus pattern (54 bp):
CAAGGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTATAAAC
Found at i:36879293 original size:27 final size:25
Alignment explanation
Indices: 36879263--36879357 Score: 73
Period size: 27 Copynumber: 3.5 Consensus size: 25
36879253 AATTCTATCT
36879263 TATTTCAGTAATTTTACAAATCGAGG
1 TATTT-AGTAATTTTACAAATCGAGG
* * *
36879289 ATATTTGGATAATTTTATAAATCGGGGG
1 -TATTTAG-TAATTTTACAAATC-GAGG
* * *
36879317 TACTTTGGTAATTTTACAAGTTGAGTG
1 TA-TTTAGTAATTTTACAAATCGAG-G
36879344 TATTTCAGTAATTT
1 TATTT-AGTAATTT
36879358 GGTAAACTAA
Statistics
Matches: 55, Mismatches: 8, Indels: 10
0.75 0.11 0.14
Matches are distributed among these distances:
26 6 0.11
27 41 0.75
28 8 0.15
ACGTcount: A:0.31, C:0.07, G:0.19, T:0.43
Consensus pattern (25 bp):
TATTTAGTAATTTTACAAATCGAGG
Found at i:36889157 original size:89 final size:89
Alignment explanation
Indices: 36889006--36889179 Score: 330
Period size: 89 Copynumber: 2.0 Consensus size: 89
36888996 CAAGTGCAAT
*
36889006 TATTCCAAAGGCTAATGTTTCCCTTTTGATACCTTCATCGCAACTAGTAGAAAATTTATGCAACG
1 TATTCCAAAGGCTAATGTTTCCCTTTCGATACCTTCATCGCAACTAGTAGAAAATTTATGCAACG
36889071 GCAAGGCAATTCAAAATCGCTGGC
66 GCAAGGCAATTCAAAATCGCTGGC
*
36889095 TATTCCAAAGGCTAATGTTTCCCTTTCGATACCTTCATCGCAACTAGTAGAAAATTTATGCAATG
1 TATTCCAAAGGCTAATGTTTCCCTTTCGATACCTTCATCGCAACTAGTAGAAAATTTATGCAACG
36889160 GCAAGGCAATTCAAAATCGC
66 GCAAGGCAATTCAAAATCGC
36889180 AGGTTTGCTT
Statistics
Matches: 83, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
89 83 1.00
ACGTcount: A:0.32, C:0.22, G:0.16, T:0.29
Consensus pattern (89 bp):
TATTCCAAAGGCTAATGTTTCCCTTTCGATACCTTCATCGCAACTAGTAGAAAATTTATGCAACG
GCAAGGCAATTCAAAATCGCTGGC
Found at i:36889525 original size:62 final size:62
Alignment explanation
Indices: 36889428--36889545 Score: 209
Period size: 62 Copynumber: 1.9 Consensus size: 62
36889418 TCCCCAAACC
* *
36889428 GCAAACTATGTTGTAGCAGTTATAGGTCCCGAAATTGCTAATTGTGAAAAGGAACTGATCAA
1 GCAAACTATGATGTAGCAGTTATAGGTCCCGAAATTGCTAATTGTGAAAAGAAACTGATCAA
*
36889490 GCAAACTATGATGTAGCTGTTATAGGTCCCGAAATTGCTAATTGTGAAAAGAAACT
1 GCAAACTATGATGTAGCAGTTATAGGTCCCGAAATTGCTAATTGTGAAAAGAAACT
36889546 TATTAACGTA
Statistics
Matches: 53, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
62 53 1.00
ACGTcount: A:0.36, C:0.14, G:0.22, T:0.28
Consensus pattern (62 bp):
GCAAACTATGATGTAGCAGTTATAGGTCCCGAAATTGCTAATTGTGAAAAGAAACTGATCAA
Found at i:36889958 original size:69 final size:69
Alignment explanation
Indices: 36889847--36889982 Score: 218
Period size: 69 Copynumber: 2.0 Consensus size: 69
36889837 TAATTAATCC
* ** *
36889847 TTAATATTCCAATTATTAGCTATTCAAGGTGGACTCAGAATCTAACCAAACCGAAATAATATCAA
1 TTAATAGTCCAATTATTAGCTATTCAAAATAGACTCAGAATCTAACCAAACCGAAATAATATCAA
36889912 CCGA
66 CCGA
**
36889916 TTAATAGTCCAATTATTAGCTATTCAAAATAGACTTTGAATCTAACCAAACCGAAATAATATCAA
1 TTAATAGTCCAATTATTAGCTATTCAAAATAGACTCAGAATCTAACCAAACCGAAATAATATCAA
36889981 CC
66 CC
36889983 TTCTTACCGC
Statistics
Matches: 61, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
69 61 1.00
ACGTcount: A:0.42, C:0.20, G:0.10, T:0.29
Consensus pattern (69 bp):
TTAATAGTCCAATTATTAGCTATTCAAAATAGACTCAGAATCTAACCAAACCGAAATAATATCAA
CCGA
Found at i:36892891 original size:55 final size:56
Alignment explanation
Indices: 36892787--36892910 Score: 162
Period size: 55 Copynumber: 2.2 Consensus size: 56
36892777 CTTAAACTTT
* * ** *
36892787 TAAGTCAGTATTGTCCACGGGTAGGCCACACGGGCGTGTGCCATAGCCGTG-TCTA
1 TAAGTCAGTATTGTCCACGAGTAGGCCACACAGGCGTGCACCATAGCCGTGCCCTA
* *
36892842 TAAGTCAGTATTGTCCACGAGTAGGCCACACAGGCGTGCATCATGGCCGTGCCCTA
1 TAAGTCAGTATTGTCCACGAGTAGGCCACACAGGCGTGCACCATAGCCGTGCCCTA
*
36892898 -AAGTCAGTGTTGT
1 TAAGTCAGTATTGT
36892911 ACACAGGCTA
Statistics
Matches: 60, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
55 57 0.95
56 3 0.05
ACGTcount: A:0.22, C:0.25, G:0.29, T:0.24
Consensus pattern (56 bp):
TAAGTCAGTATTGTCCACGAGTAGGCCACACAGGCGTGCACCATAGCCGTGCCCTA
Found at i:36894457 original size:47 final size:48
Alignment explanation
Indices: 36894386--36894612 Score: 261
Period size: 47 Copynumber: 4.8 Consensus size: 48
36894376 GTAAGGTGCT
* * *
36894386 GATGCCATGTCCCAGACACAGTCTTACAATGGCTCAT-ATCTCATGTC
1 GATGCCATGTCCCAGACACGGTCTTACACTGGCTCATCATCTCATGCC
* *
36894433 GATGCCATGTCCCAGACACGGTCTTACACTGGCTCAT-ATCTCAAGTC
1 GATGCCATGTCCCAGACACGGTCTTACACTGGCTCATCATCTCATGCC
* ** * *
36894480 GATGCCATGTACCAGACATTGTCTTACACTGACT-ATCATCTCGTAGCC
1 GATGCCATGTCCCAGACACGGTCTTACACTGGCTCATCATCTCAT-GCC
* *
36894528 GATG-CATGTCCCAGACA-TGTCTTACACTAGCTC-TCATCTCAATGCC
1 GATGCCATGTCCCAGACACGGTCTTACACTGGCTCATCATCTC-ATGCC
* *
36894574 GATGCCATGTCCCAAACATGGTCTTACACTGGCTC-TCAT
1 GATGCCATGTCCCAGACACGGTCTTACACTGGCTCATCAT
36894613 AATGTGGCTG
Statistics
Matches: 157, Mismatches: 17, Indels: 11
0.85 0.09 0.06
Matches are distributed among these distances:
46 29 0.18
47 104 0.66
48 24 0.15
ACGTcount: A:0.24, C:0.31, G:0.17, T:0.28
Consensus pattern (48 bp):
GATGCCATGTCCCAGACACGGTCTTACACTGGCTCATCATCTCATGCC
Found at i:36894577 original size:94 final size:92
Alignment explanation
Indices: 36894386--36894651 Score: 295
Period size: 94 Copynumber: 2.8 Consensus size: 92
36894376 GTAAGGTGCT
* * * *
36894386 GATGCCATGTCCCAGACACAGTCTTACAATGGCTCAT-ATCTCATGTCGATGCCATGTCCCAGAC
1 GATGCCATGTCCCAGACATAGTCTTACACTGGCT-ATCATCTCGTGCCGATG-CATGTCCCAGAC
* * *
36894450 ACGGTCTTACACTGGCTCATATCTCAAGTC
64 A-TGTCTTACACTAGCTCATATCTCAAGCC
* * *
36894480 GATGCCATGTACCAGACATTGTCTTACACTGACTATCATCTCGTAGCCGATGCATGTCCCAGACA
1 GATGCCATGTCCCAGACATAGTCTTACACTGGCTATCATCTCGT-GCCGATGCATGTCCCAGACA
36894545 TGTCTTACACTAGCTC-TCATCTCAATGCC
65 TGTCTTACACTAGCTCAT-ATCTCAA-GCC
* * * * * *
36894574 GATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCATAAT-GTGGCTGATGCATGTCCTAGAC
1 GATGCCATGTCCCAGACATAGTCTTACACTGGCTATCAT-CTCGT-GCCGATGCATGTCCCAGAC
36894638 ATGTCTTACACTAG
64 ATGTCTTACACTAG
36894652 TTCACAAACA
Statistics
Matches: 148, Mismatches: 19, Indels: 10
0.84 0.11 0.06
Matches are distributed among these distances:
92 1 0.01
93 23 0.16
94 117 0.79
95 7 0.05
ACGTcount: A:0.24, C:0.29, G:0.18, T:0.28
Consensus pattern (92 bp):
GATGCCATGTCCCAGACATAGTCTTACACTGGCTATCATCTCGTGCCGATGCATGTCCCAGACAT
GTCTTACACTAGCTCATATCTCAAGCC
Found at i:36894630 original size:47 final size:45
Alignment explanation
Indices: 36894386--36894651 Score: 179
Period size: 47 Copynumber: 5.7 Consensus size: 45
36894376 GTAAGGTGCT
* * * *
36894386 GATGCCATGTCCCAGACACAGTCTTACAATGGCTCAT-ATCTC-ATGTC
1 GATG-CATGTCCCAGACA-TGTCTTACACTAGCTC-TCA-CTCAATGCC
* * *
36894433 GATGCCATGTCCCAGACACGGTCTTACACTGGCTCAT-ATCTCAA-GTC
1 GATG-CATGTCCCAGACA-TGTCTTACACTAGCTC-TCA-CTCAATGCC
* * *
36894480 GATGCCATGTACCAGACATTGTCTTACACT-GACTATCATCTC-GTAGCC
1 GATG-CATGTCCCAGACA-TGTCTTACACTAG-CTCTCA-CTCAAT-GCC
36894528 GATGCATGTCCCAGACATGTCTTACACTAGCTCTCATCTCAATGCC
1 GATGCATGTCCCAGACATGTCTTACACTAGCTCTCA-CTCAATGCC
* * *
36894574 GATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCA-T-AATGTGGCT
1 GATG-CATGTCCCAGACAT-GTCTTACACTAGCTCTCACTCAA--T-GCC
*
36894622 GATGCATGTCCTAGACATGTCTTACACTAG
1 GATGCATGTCCCAGACATGTCTTACACTAG
36894652 TTCACAAACA
Statistics
Matches: 190, Mismatches: 17, Indels: 25
0.82 0.07 0.11
Matches are distributed among these distances:
45 2 0.01
46 41 0.22
47 117 0.62
48 30 0.16
ACGTcount: A:0.24, C:0.29, G:0.18, T:0.28
Consensus pattern (45 bp):
GATGCATGTCCCAGACATGTCTTACACTAGCTCTCACTCAATGCC
Found at i:36896609 original size:10 final size:10
Alignment explanation
Indices: 36896590--36896631 Score: 50
Period size: 10 Copynumber: 4.1 Consensus size: 10
36896580 TTCTCAACTC
36896590 ATCA-ACCAA
1 ATCATACCAA
36896599 ATCATACCAA
1 ATCATACCAA
*
36896609 ATCTAAACCAAA
1 ATC-ATACC-AA
36896621 ATCATACCAA
1 ATCATACCAA
36896631 A
1 A
36896632 ACATCTGTTC
Statistics
Matches: 28, Mismatches: 2, Indels: 5
0.80 0.06 0.14
Matches are distributed among these distances:
9 4 0.14
10 11 0.39
11 8 0.29
12 5 0.18
ACGTcount: A:0.55, C:0.29, G:0.00, T:0.17
Consensus pattern (10 bp):
ATCATACCAA
Found at i:36902529 original size:768 final size:768
Alignment explanation
Indices: 36901097--36902532 Score: 2358
Period size: 768 Copynumber: 1.9 Consensus size: 768
36901087 ACTGTCACCC
* ** *
36901097 TAAAAATCATATCTTGAGTTTCACAACTCGAAAATCAGTTTCGTAATTTTTCCCTGAAACTAGAC
1 TAAAAATCATATCTTGAGTTTCAAAACTCGAAAATCAGTCCCGTAAATTTTCCCTGAAACTAGAC
* **
36901162 TCATATTCCCATCTACATATTTTTTTCTAGAATTTTCGGTTGGGCCAATTAGTACAGTTTATTAG
66 TCATATTCCCATCTACATATTTTTTCCTAGAATTTTCGGTCAGGCCAATTAGTACAGTTTATTAG
* * * *
36901227 TTAAATTCTCCCCTGTTACAGGGTGCGACTACACTGACCTTCATGCATTACGATTTGGATATCTC
131 TCAAAGTCTCCCATGTTACAGGGTGCGACTACACTGACCTTCATGCATTACGACTTGGATATCTC
* * * *
36901292 CCTCCACAGAGCTTCAATACTGATGCCGTTTGTTTCTATAGAAACTAGACTCAGAGATGAATCTA
196 CCTCCACAGAGCTTCAATACTGATGCCGTTTATTTATATAGAAAATAGACTCAGAGAGGAATCTA
*
36901357 TACATATATGGCATGACTCCTAATTATCTCTGGTTAATATCTAATGAATTTCCAAAGTCGGAACA
261 TACATATATGGCATGACTCCTAATTATCTCTGGTTAATATATAATGAATTTCCAAAGTCGGAACA
* *
36901422 GAGAATCCAGAAACCGTTCTGGCCCTGTCTCACGAGAACCTGAATATCTCTTAACATACAGTCCA
326 GAGAATCCAGAAACCGTTCTGGCCCTGTCTCACAAGAACCTGAATATCTCCTAACATACAGTCCA
* *
36901487 TATGATCGTTTCGTTACTTTCCTATGAAAATAGATTCATCAAGGTTCGTTTACATAATTTATTCA
391 TATGATCGTTTCGTTACTTTCCTATGAAAATACATTCAGCAAGGTTCGTTTACATAATTTATTCA
*
36901552 CTATTTAATTCCATTCCTACTAGTTTTAGTGATTTTCCAAATCTACATCACTGCTGCTGTCAGCA
456 CTATTTAATTCCATTCCTACTAGTTTTAGTGAATTTCCAAATCTACATCACTGCTGCTGTCAGCA
*
36901617 TCTCCCTTTAAGGTAGACTTTACCTATTTCATAGTTTCCATGATTCAACTAGCCCTTTTAGCATA
521 TCTCCCTTTAAGATAGACTTTACCTATTTCATAGTTTCCATGATTCAACTAGCCCTTTTAGCATA
*
36901682 AATAGCACAAATTATGATAGTGATTAACCATTCCCATGGCCAATCCTTGTTAAGCATATCCACAC
586 AATAGCACAAATTATGATAGTGATTAACCATTCCCATGGCCAATCCTTGTCAAGCATATCCACAC
*
36901747 CTCTCAATAACCATATCCTGTAACACCCCGAACCCGAGACCGTCACCGGAGTCGAACACGAGGTG
651 ATCTCAATAACCATATCCTGTAACACCCCGAACCCGAGACCGTCACCGGAGTCGAACACGAGGTG
36901812 TTAACAAACTTTAAAAATTTTCCAGACACTGCCAATCTGCGTAATAGTCACTT
716 TTAACAAACTTTAAAAATTTTCCAGACACTGCCAATCTGCGTAATAGTCACTT
*
36901865 TAAAAATCATATCTTGAG-TTCAGAAACTCG-GAATCCAGTCCCGTAAATTTTCCCTGAAACTAG
1 TAAAAATCATATCTTGAGTTTCA-AAACTCGAAAAT-CAGTCCCGTAAATTTTCCCTGAAACTAG
* * *
36901928 ACTCATATTTCCATCTACATATTTTTTCCTAGAGTTTTTGGTCAGGCCAATTAGTACAGTTTATT
64 ACTCATATTCCCATCTACATATTTTTTCCTAGAATTTTCGGTCAGGCCAATTAGTACAGTTTATT
* * **
36901993 AGTCAAAGTCTCCCATGTTACAGGGAT-TGACTACCCTGACCTTTGTGCATTACGACTTGGATAT
129 AGTCAAAGTCTCCCATGTTACAGGG-TGCGACTACACTGACCTTCATGCATTACGACTTGGATAT
** *
36902057 CTCCCTGTACAGAGCTTCAATACTGATGCCGTTTATTTATATAGAAAATAGACTCAGAGGGGAAT
193 CTCCCTCCACAGAGCTTCAATACTGATGCCGTTTATTTATATAGAAAATAGACTCAGAGAGGAAT
* * * *
36902122 CTATACATATATGGCTTGACTCCTAATTCTCTCTGGTTAGTTTATAATGAATTTCCAAAGTCGGA
258 CTATACATATATGGCATGACTCCTAATTATCTCTGGTTAATATATAATGAATTTCCAAAGTCGGA
* *
36902187 ACAG-GAAATCCAGAAACCGTTCTGGCTCTGTCTCACAAGAACCTGAATATCTCCTAACATACTG
323 ACAGAG-AATCCAGAAACCGTTCTGGCCCTGTCTCACAAGAACCTGAATATCTCCTAACATACAG
* * *
36902251 TCCGTATGATTGTTTCGTTACTTTTCTATGAAAATACATTCAGCAAGGTTCGTTTACATAATTTA
387 TCCATATGATCGTTTCGTTACTTTCCTATGAAAATACATTCAGCAAGGTTCGTTTACATAATTTA
*
36902316 TTCACTATTTAATTCCATTCCTACTATTTTTAGTGAATTTCCAAATCTACATCACTGCTGCTGTC
452 TTCACTATTTAATTCCATTCCTACTAGTTTTAGTGAATTTCCAAATCTACATCACTGCTGCTGTC
* *
36902381 AGCATCTGCCTTTAAGATAGACTTTACCTATTTCATAGTTTCCATGATTCAACTAGCCCTTTTTG
517 AGCATCTCCCTTTAAGATAGACTTTACCTATTTCATAGTTTCCATGATTCAACTAGCCCTTTTAG
* * *
36902446 CATAAGTAGCACAATTTATGATAGTGATTAACCATTCCCATGGCCAATCCTTGTCAAGCCTATCC
582 CATAAATAGCACAAATTATGATAGTGATTAACCATTCCCATGGCCAATCCTTGTCAAGCATATCC
36902511 ACACATCTCAATAACCATATCC
647 ACACATCTCAATAACCATATCC
36902533 ATACCAAATG
Statistics
Matches: 614, Mismatches: 50, Indels: 8
0.91 0.07 0.01
Matches are distributed among these distances:
767 8 0.01
768 605 0.99
769 1 0.00
ACGTcount: A:0.29, C:0.23, G:0.14, T:0.34
Consensus pattern (768 bp):
TAAAAATCATATCTTGAGTTTCAAAACTCGAAAATCAGTCCCGTAAATTTTCCCTGAAACTAGAC
TCATATTCCCATCTACATATTTTTTCCTAGAATTTTCGGTCAGGCCAATTAGTACAGTTTATTAG
TCAAAGTCTCCCATGTTACAGGGTGCGACTACACTGACCTTCATGCATTACGACTTGGATATCTC
CCTCCACAGAGCTTCAATACTGATGCCGTTTATTTATATAGAAAATAGACTCAGAGAGGAATCTA
TACATATATGGCATGACTCCTAATTATCTCTGGTTAATATATAATGAATTTCCAAAGTCGGAACA
GAGAATCCAGAAACCGTTCTGGCCCTGTCTCACAAGAACCTGAATATCTCCTAACATACAGTCCA
TATGATCGTTTCGTTACTTTCCTATGAAAATACATTCAGCAAGGTTCGTTTACATAATTTATTCA
CTATTTAATTCCATTCCTACTAGTTTTAGTGAATTTCCAAATCTACATCACTGCTGCTGTCAGCA
TCTCCCTTTAAGATAGACTTTACCTATTTCATAGTTTCCATGATTCAACTAGCCCTTTTAGCATA
AATAGCACAAATTATGATAGTGATTAACCATTCCCATGGCCAATCCTTGTCAAGCATATCCACAC
ATCTCAATAACCATATCCTGTAACACCCCGAACCCGAGACCGTCACCGGAGTCGAACACGAGGTG
TTAACAAACTTTAAAAATTTTCCAGACACTGCCAATCTGCGTAATAGTCACTT
Found at i:36904596 original size:40 final size:40
Alignment explanation
Indices: 36904513--36904735 Score: 166
Period size: 40 Copynumber: 5.6 Consensus size: 40
36904503 TTGAATGCTG
* * * * *
36904513 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTA-AGTGAATATA
1 TCCGGACTAAGTCCCGAAGGCATTCGTGCGAGA-T-ACTAAA
* * *
36904553 TCCGGACTAAGAT-CTGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGACTAAG-TCCCGAAGGCATTCGTGCGAGATACTAAA
** * *
36904593 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGACTAAGTCCCGAAGGCATTCGTGCGAGATACTAAA
** * **
36904633 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
1 TCCGGACTAAGTCCCGAAGGCATTCGTGCGAGATACTAAA
** * * *
36904673 TCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAA
1 TCCGGACTAAGTCCCGAAGGCATTCGTGCGAGATACTAAA
* * *
36904712 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGACTAAGTCCCGAAGGCATT
36904736 TGAACGAGGA
Statistics
Matches: 160, Mismatches: 19, Indels: 9
0.85 0.10 0.05
Matches are distributed among these distances:
39 35 0.22
40 114 0.71
41 10 0.06
42 1 0.01
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.27
Consensus pattern (40 bp):
TCCGGACTAAGTCCCGAAGGCATTCGTGCGAGATACTAAA
Found at i:36904652 original size:80 final size:79
Alignment explanation
Indices: 36904513--36904737 Score: 236
Period size: 80 Copynumber: 2.8 Consensus size: 79
36904503 TTGAATGCTG
* * * * * * * * * *
36904513 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGAATATATCCGGACTAAGAT-CTGAAGGCCTT
1 TCCGGGTTAAGTCCCGAAGGCATTGTGC-GAGTTACTAAAACCGGGCTAAG-TCCCGAAGGCATT
36904577 TGTGCGAGATACTAAA
64 TGTGCGAGATACTAAA
* * * *
36904593 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCATTC
1 TCCGGGTTAAGTCCCGAAGGCATT-GTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATTT
* **
36904658 GTGCGAGTTGTTAAA
65 GTGCGAGATACTAAA
* * *
36904673 TCCGGGTTATGTCCCGAAGGCATTGTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATTTG
36904738 AACGAGGAGC
Statistics
Matches: 122, Mismatches: 21, Indels: 5
0.82 0.14 0.03
Matches are distributed among these distances:
79 36 0.30
80 82 0.67
81 4 0.03
ACGTcount: A:0.24, C:0.20, G:0.28, T:0.27
Consensus pattern (79 bp):
TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATTTG
TGCGAGATACTAAA
Found at i:36904717 original size:39 final size:40
Alignment explanation
Indices: 36904568--36904735 Score: 230
Period size: 40 Copynumber: 4.2 Consensus size: 40
36904558 ACTAAGATCT
* * *
36904568 GAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTCCC
1 GAAGGCATTCGTGCGAGTTACTAAATCCGGGTTAAGTCCC
*
36904608 GAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCC
1 GAAGGCATTCGTGCGAGTTACTAAATCCGGGTTAAGTCCC
** *
36904648 GAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTATGTCCC
1 GAAGGCATTCGTGCGAGTTACTAAATCCGGGTTAAGTCCC
* * * *
36904688 GAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTCCC
1 GAAGGCATTCGTGCGAGTTACTAAATCCGGGTTAAGTCCC
36904727 GAAGGCATT
1 GAAGGCATT
36904736 TGAACGAGGA
Statistics
Matches: 117, Mismatches: 11, Indels: 1
0.91 0.09 0.01
Matches are distributed among these distances:
39 34 0.29
40 83 0.71
ACGTcount: A:0.24, C:0.20, G:0.29, T:0.27
Consensus pattern (40 bp):
GAAGGCATTCGTGCGAGTTACTAAATCCGGGTTAAGTCCC
Found at i:36904755 original size:79 final size:80
Alignment explanation
Indices: 36904588--36904770 Score: 226
Period size: 79 Copynumber: 2.3 Consensus size: 80
36904578 GTGCGAGATA
* * *
36904588 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGG
** **
36904653 CATTCGTGCGAGTTG
66 CATTCGAACGAGGAG
* * * *
36904668 TTAAATCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGG
*
36904732 CATTTGAACGAGGAG
66 CATTCGAACGAGGAG
* *
36904747 CTATATCC-GGTTAAATCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGG
36904771 TACGTAATTT
Statistics
Matches: 87, Mismatches: 16, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
78 14 0.16
79 46 0.53
80 27 0.31
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.26
Consensus pattern (80 bp):
CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGG
CATTCGAACGAGGAG
Found at i:36910809 original size:76 final size:76
Alignment explanation
Indices: 36910717--36910868 Score: 259
Period size: 76 Copynumber: 2.0 Consensus size: 76
36910707 TTCATATTCC
*
36910717 ATTAAGTTAATTAATCCTTAATATTCCAATTATTAGCTATTCAAAGGGGACTCAGAATCTAACCA
1 ATTAAGTTAATTAATCCTTAATATTCCAATTATTAGCTATTCAAAGGAGACTCAGAATCTAACCA
36910782 AACCGAAAAAA
66 AACCGAAAAAA
* * *
36910793 ATTAAGTTAATTAATCCTTAATATTCCAATTATTAGCTATTCAAAGTAGACTTAGAATTTAACCA
1 ATTAAGTTAATTAATCCTTAATATTCCAATTATTAGCTATTCAAAGGAGACTCAGAATCTAACCA
*
36910858 AATCGAAAAAA
66 AACCGAAAAAA
36910869 TATCAACCTT
Statistics
Matches: 71, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
76 71 1.00
ACGTcount: A:0.44, C:0.15, G:0.09, T:0.32
Consensus pattern (76 bp):
ATTAAGTTAATTAATCCTTAATATTCCAATTATTAGCTATTCAAAGGAGACTCAGAATCTAACCA
AACCGAAAAAA
Found at i:36927207 original size:78 final size:79
Alignment explanation
Indices: 36927119--36927266 Score: 271
Period size: 79 Copynumber: 1.9 Consensus size: 79
36927109 ATCTGAATGT
*
36927119 TTCTTCTTC-TTTTTTTTTGCTAAAATTGGGGTTTAATCAAGTCTCTAAGCATACTGTCTTTTGA
1 TTCTTCTTCTTTTTTTTTTGCTAAAATTGGGGTTTAATCAAGTCTCTAAGAATACTGTCTTTTGA
*
36927183 GATTGCAATACTTC
66 AATTGCAATACTTC
36927197 TTCTTCTTCTTTTTTTTTTGCTAAAATTGGGGTTTAATCAAGTCTCTAAGAATACTGTCTTTTGA
1 TTCTTCTTCTTTTTTTTTTGCTAAAATTGGGGTTTAATCAAGTCTCTAAGAATACTGTCTTTTGA
36927262 AATTG
66 AATTG
36927267 AGTTCTTCGA
Statistics
Matches: 67, Mismatches: 2, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
78 9 0.13
79 58 0.87
ACGTcount: A:0.22, C:0.15, G:0.14, T:0.49
Consensus pattern (79 bp):
TTCTTCTTCTTTTTTTTTTGCTAAAATTGGGGTTTAATCAAGTCTCTAAGAATACTGTCTTTTGA
AATTGCAATACTTC
Found at i:36929418 original size:70 final size:71
Alignment explanation
Indices: 36929290--36929429 Score: 255
Period size: 70 Copynumber: 2.0 Consensus size: 71
36929280 ACTGCTTTCT
*
36929290 TTAGTTTCTCAAGCCATGGAGCCAATGCCTAGAAAACCAGCATTTTCTTTTCTGAATGAGTGGGT
1 TTAGTTTCTCAAGCCATGGAGCCAATGCCTAGAAAACCAGCATTTTCTGTTCTGAATGAGTGGGT
36929355 GATGAG
66 GATGAG
*
36929361 TTAGTTTCTCAAGCCATTGAGCCAATGCC-AGAAAACCAGCATTTTCTGTTCTGAATGAGTGGGT
1 TTAGTTTCTCAAGCCATGGAGCCAATGCCTAGAAAACCAGCATTTTCTGTTCTGAATGAGTGGGT
36929425 GATGA
66 GATGA
36929430 TCTGAGTAAC
Statistics
Matches: 67, Mismatches: 2, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
70 39 0.58
71 28 0.42
ACGTcount: A:0.27, C:0.19, G:0.24, T:0.31
Consensus pattern (71 bp):
TTAGTTTCTCAAGCCATGGAGCCAATGCCTAGAAAACCAGCATTTTCTGTTCTGAATGAGTGGGT
GATGAG
Found at i:36935847 original size:96 final size:96
Alignment explanation
Indices: 36935691--36935873 Score: 323
Period size: 96 Copynumber: 1.9 Consensus size: 96
36935681 TTTAGAAACA
* *
36935691 ATAGTCCAATTGCAAACCAAGTGTATTTTGAGAAAGAGGAAAAAAGCTGCTGACTAGCTTAATAA
1 ATAGTCCAATTGCAAACCAAGTGTATTTCGAGAAAGAGGAAAAAAGCTACTGACTAGCTTAATAA
*
36935756 GGTGCCTTTAAATTGGAATACAATAGAAGCT
66 GGTGCCTTTAAATAGGAATACAATAGAAGCT
36935787 ATAGTCCAATTGCAAACCAAGTGTATTTCGA-AAGAGAGGAAAAAAGCTACTGACTAGCTTAATA
1 ATAGTCCAATTGCAAACCAAGTGTATTTCGAGAA-AGAGGAAAAAAGCTACTGACTAGCTTAATA
36935851 AGGTGCCTTTAAATAGGAATACA
65 AGGTGCCTTTAAATAGGAATACA
36935874 GAGGTCCAGG
Statistics
Matches: 83, Mismatches: 3, Indels: 2
0.94 0.03 0.02
Matches are distributed among these distances:
95 2 0.02
96 81 0.98
ACGTcount: A:0.40, C:0.14, G:0.20, T:0.25
Consensus pattern (96 bp):
ATAGTCCAATTGCAAACCAAGTGTATTTCGAGAAAGAGGAAAAAAGCTACTGACTAGCTTAATAA
GGTGCCTTTAAATAGGAATACAATAGAAGCT
Found at i:36940669 original size:40 final size:40
Alignment explanation
Indices: 36940611--36940828 Score: 307
Period size: 40 Copynumber: 5.5 Consensus size: 40
36940601 CTAACAGGGT
* * * *
36940611 TAAGTCCCGAAGACATTTGTGCTAGTGATTAATTCCGGGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCCGGGC
*
36940651 TAAGTCCCGAAGGTATTTGTGCGAGTTACTAATTCCGGGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCCGGGC
* * *
36940691 TAAGTCCCGAAGGCATTTGTGCTAGTGACTAATTCCAGGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCCGGGC
36940731 TAAG-CCCGAAGGCATTTGTGCGAGTTACT-ATATCCGGGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT-TCCGGGC
*
36940770 TAAGTCCCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT-TCCGGGC
*
36940810 TAAGTCCCAAAGGCATTTG
1 TAAGTCCCGAAGGCATTTG
36940829 AGCAAGTAGC
Statistics
Matches: 162, Mismatches: 14, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
38 2 0.01
39 33 0.20
40 127 0.78
ACGTcount: A:0.25, C:0.22, G:0.26, T:0.28
Consensus pattern (40 bp):
TAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCCGGGC
Found at i:36940778 original size:79 final size:80
Alignment explanation
Indices: 36940611--36940828 Score: 325
Period size: 79 Copynumber: 2.7 Consensus size: 80
36940601 CTAACAGGGT
* * *
36940611 TAAGTCCCGAAGACATTTGTGCTAGTGATTAATTCCGGGCTAAGTCCCGAAGGTATTTGTGCGAG
1 TAAGTCCCGAAGGCATTTGTGCTAGTGACTAATTCCGGGCTAAGTCCCGAAGGCATTTGTGCGAG
36940676 TTACTAATTCCGGGC
66 TTACTAATTCCGGGC
*
36940691 TAAGTCCCGAAGGCATTTGTGCTAGTGACTAATTCCAGGCTAAG-CCCGAAGGCATTTGTGCGAG
1 TAAGTCCCGAAGGCATTTGTGCTAGTGACTAATTCCGGGCTAAGTCCCGAAGGCATTTGTGCGAG
36940755 TTACT-ATATCCGGGC
66 TTACTAAT-TCCGGGC
* * * *
36940770 TAAGTCCCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTAAGTCCCAAAGGCATTTG
1 TAAGTCCCGAAGGCATTTGTGCTAGTGACTAAT-TCCGGGCTAAGTCCCGAAGGCATTTG
36940829 AGCAAGTAGC
Statistics
Matches: 126, Mismatches: 9, Indels: 6
0.89 0.06 0.04
Matches are distributed among these distances:
78 4 0.03
79 68 0.54
80 54 0.43
ACGTcount: A:0.25, C:0.22, G:0.26, T:0.28
Consensus pattern (80 bp):
TAAGTCCCGAAGGCATTTGTGCTAGTGACTAATTCCGGGCTAAGTCCCGAAGGCATTTGTGCGAG
TTACTAATTCCGGGC
Found at i:36940827 original size:119 final size:120
Alignment explanation
Indices: 36940611--36940828 Score: 334
Period size: 119 Copynumber: 1.8 Consensus size: 120
36940601 CTAACAGGGT
* * *
36940611 TAAGTCCCGAAGACATTTGTGCTAGTGATTAATTCCGGGCTAAGTCCCGAAGGTATTTGTGCGAG
1 TAAGTCCCGAAGACATTTGTGCGAGTGACTAATTCCGGGCTAAGTCCCGAAGGCATTTGTGCGAG
* *
36940676 TTACTAATTCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAATTCCAGGC
66 TTACTAATACCGGGCTAAGTCCCAAAGGCATTTGTGCTAGTGACTAATTCCAGGC
* *
36940731 TAAG-CCCGAAGGCATTTGTGCGAGTTACT-ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGA
1 TAAGTCCCGAAGACATTTGTGCGAGTGACTAAT-TCCGGGCTAAGTCCCGAAGGCATTTGTGCGA
36940794 GTTACT-ATAACCGGGCTAAGTCCCAAAGGCATTTG
65 GTTACTAAT-ACCGGGCTAAGTCCCAAAGGCATTTG
36940829 AGCAAGTAGC
Statistics
Matches: 89, Mismatches: 7, Indels: 5
0.88 0.07 0.05
Matches are distributed among these distances:
118 4 0.04
119 81 0.91
120 4 0.04
ACGTcount: A:0.25, C:0.22, G:0.26, T:0.28
Consensus pattern (120 bp):
TAAGTCCCGAAGACATTTGTGCGAGTGACTAATTCCGGGCTAAGTCCCGAAGGCATTTGTGCGAG
TTACTAATACCGGGCTAAGTCCCAAAGGCATTTGTGCTAGTGACTAATTCCAGGC
Found at i:36940850 original size:79 final size:79
Alignment explanation
Indices: 36940611--36940861 Score: 296
Period size: 79 Copynumber: 3.2 Consensus size: 79
36940601 CTAACAGGGT
* *
36940611 TAAGTCCCGAAGACATTTGTGCTAGTGA-T-TAATTCCGGGCTAAGTCCCGAAGGTATTTGTGCG
1 TAAGTCCCGAAGGCATTTGTGCTAGTGACTATAA--CCGGGCTAAGTCCCGAAGGCATTTGTGCG
*
36940674 AGTTACTAATTCCGGGC
64 AGTTACT-ATACCGGGC
* *
36940691 TAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATTCCAGGCTAAG-CCCGAAGGCATTTGTGCGA
1 TAAGTCCCGAAGGCATTTGTGCTAGTGACTATA-ACCGGGCTAAGTCCCGAAGGCATTTGTGCGA
36940754 GTTACTATATCCGGGC
65 GTTACTATA-CCGGGC
* * * * *
36940770 TAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTAAGTCCCAAAGGCATTTGAGCAAG
1 TAAGTCCCGAAGGCATTTGTGCTAGTGACTATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAG
*
36940835 -TAGCTATACCCGGC
66 TTA-CTATACCGGGC
* *
36940849 TAAATTCCGAAGG
1 TAAGTCCCGAAGG
36940862 TACTTGGTTT
Statistics
Matches: 149, Mismatches: 15, Indels: 15
0.83 0.08 0.08
Matches are distributed among these distances:
78 2 0.01
79 86 0.58
80 59 0.40
81 2 0.01
ACGTcount: A:0.26, C:0.22, G:0.26, T:0.26
Consensus pattern (79 bp):
TAAGTCCCGAAGGCATTTGTGCTAGTGACTATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAG
TTACTATACCGGGC
Found at i:36948022 original size:40 final size:40
Alignment explanation
Indices: 36947976--36948119 Score: 182
Period size: 40 Copynumber: 3.6 Consensus size: 40
36947966 CTCGCACAAG
* *
36947976 GCCTTCGGGTCTTAGCCCGGATATGGTTACTAGCATAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTAACTAGCATAAAT
* * * *
36948016 GCCTTCGGGTCTTAGCCCAGATATAGCAACTCGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTAACTAGCATAAAT
* * * *
36948056 GCCTTCGGATCTTAGTCCGGATATAGTCACTAGCATAAAA
1 GCCTTCGGGTCTTAGCCCGGATATAGTAACTAGCATAAAT
36948096 GCCTTC-GGTACTTAGCCCGGATAT
1 GCCTTCGGGT-CTTAGCCCGGATAT
36948120 CATTCGAATA
Statistics
Matches: 87, Mismatches: 16, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
39 2 0.02
40 85 0.98
ACGTcount: A:0.25, C:0.26, G:0.22, T:0.27
Consensus pattern (40 bp):
GCCTTCGGGTCTTAGCCCGGATATAGTAACTAGCATAAAT
Found at i:36948076 original size:80 final size:79
Alignment explanation
Indices: 36947940--36948119 Score: 231
Period size: 80 Copynumber: 2.3 Consensus size: 79
36947930 ACTCAAGTAT
* * *
36947940 CTTCGGGAT-TTAG-CCAGATATAACCACTCGCACAAGGCCTTCGGGTCTTAGCCCGGATATGGT
1 CTTCGGG-TCTTAGCCCAGATATAACAACTCGCACAAGGCCTTCGGATCTTAGCCCGGATATAGT
* *
36948003 TACTAGCATAAATGC
65 CACTAGCATAAAAGC
* * *
36948018 CTTCGGGTCTTAGCCCAGATATAGCAACTCGCACAAATGCCTTCGGATCTTAGTCCGGATATAGT
1 CTTCGGGTCTTAGCCCAGATATAACAACTCGCAC-AAGGCCTTCGGATCTTAGCCCGGATATAGT
36948083 CACTAGCATAAAAGC
65 CACTAGCATAAAAGC
*
36948098 CTTC-GGTACTTAGCCCGGATAT
1 CTTCGGGT-CTTAGCCCAGATAT
36948120 CATTCGAATA
Statistics
Matches: 89, Mismatches: 9, Indels: 6
0.86 0.09 0.06
Matches are distributed among these distances:
77 1 0.01
78 11 0.12
79 21 0.24
80 56 0.63
ACGTcount: A:0.26, C:0.26, G:0.22, T:0.26
Consensus pattern (79 bp):
CTTCGGGTCTTAGCCCAGATATAACAACTCGCACAAGGCCTTCGGATCTTAGCCCGGATATAGTC
ACTAGCATAAAAGC
Found at i:36957077 original size:40 final size:40
Alignment explanation
Indices: 36957033--36957112 Score: 151
Period size: 40 Copynumber: 2.0 Consensus size: 40
36957023 CATCTCGGTG
*
36957033 TTAGAAACTCATTTCCAAAATACCAAAACAGCACTTAAGA
1 TTAGAAACTCATTTCCAAAATACCAAAACAACACTTAAGA
36957073 TTAGAAACTCATTTCCAAAATACCAAAACAACACTTAAGA
1 TTAGAAACTCATTTCCAAAATACCAAAACAACACTTAAGA
36957113 ATCAAAAAAC
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
40 39 1.00
ACGTcount: A:0.49, C:0.23, G:0.06, T:0.23
Consensus pattern (40 bp):
TTAGAAACTCATTTCCAAAATACCAAAACAACACTTAAGA
Found at i:36961394 original size:6 final size:6
Alignment explanation
Indices: 36961385--36961438 Score: 60
Period size: 6 Copynumber: 9.5 Consensus size: 6
36961375 AATAAAATTG
* *
36961385 AAATGA AAATAA AAATAA AAAT-- AAAT-A AAATAA GAATAA AAATAA
1 AAATAA AAATAA AAATAA AAATAA AAATAA AAATAA AAATAA AAATAA
*
36961430 GAATAA AAA
1 AAATAA AAA
36961439 AATAGGAGGA
Statistics
Matches: 41, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
4 4 0.10
5 4 0.10
6 33 0.80
ACGTcount: A:0.78, C:0.00, G:0.06, T:0.17
Consensus pattern (6 bp):
AAATAA
Found at i:36961400 original size:12 final size:11
Alignment explanation
Indices: 36961365--36961438 Score: 62
Period size: 12 Copynumber: 6.4 Consensus size: 11
36961355 TATGTCTTTC
36961365 AAAATAAAATAA
1 AAAATAAAAT-A
* *
36961377 TAAAATTGAAATG
1 -AAAA-TAAAATA
36961390 AAAATAAAAATA
1 AAAAT-AAAATA
36961402 AAAAT-AAAT-
1 AAAATAAAATA
36961411 AAAATAAGAATA
1 AAAATAA-AATA
36961423 AAAATAAGAATA
1 AAAATAA-AATA
36961435 AAAA
1 AAAA
36961439 AATAGGAGGA
Statistics
Matches: 52, Mismatches: 4, Indels: 11
0.78 0.06 0.16
Matches are distributed among these distances:
9 5 0.10
10 5 0.10
11 4 0.08
12 29 0.56
13 4 0.08
14 5 0.10
ACGTcount: A:0.76, C:0.00, G:0.05, T:0.19
Consensus pattern (11 bp):
AAAATAAAATA
Found at i:36961423 original size:27 final size:26
Alignment explanation
Indices: 36961392--36961442 Score: 84
Period size: 27 Copynumber: 1.9 Consensus size: 26
36961382 TTGAAATGAA
36961392 AATAAAAATAAAAATAAATAAAATAAG
1 AATAAAAATAAAAATAAA-AAAATAAG
*
36961419 AATAAAAATAAGAATAAAAAAATA
1 AATAAAAATAAAAATAAAAAAATA
36961443 GGAGGATTCA
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
26 6 0.26
27 17 0.74
ACGTcount: A:0.78, C:0.00, G:0.04, T:0.18
Consensus pattern (26 bp):
AATAAAAATAAAAATAAAAAAATAAG
Found at i:36966837 original size:13 final size:13
Alignment explanation
Indices: 36966815--36966847 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
36966805 AAGGGTTTCT
36966815 TTAT-TAAACTAA
1 TTATCTAAACTAA
36966827 TTATCTAAACTAA
1 TTATCTAAACTAA
*
36966840 TTAACTAA
1 TTATCTAA
36966848 TTTAATTAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 4 0.21
13 15 0.79
ACGTcount: A:0.48, C:0.12, G:0.00, T:0.39
Consensus pattern (13 bp):
TTATCTAAACTAA
Found at i:36969388 original size:20 final size:19
Alignment explanation
Indices: 36969343--36969380 Score: 51
Period size: 20 Copynumber: 2.0 Consensus size: 19
36969333 GAGCGAAAGG
*
36969343 AACGAG-AAATGGGCCAAA
1 AACGAGAAAATAGGCCAAA
36969361 AACGGAGAAAATAGGCCAAA
1 AAC-GAGAAAATAGGCCAAA
36969381 GTACGAGATC
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
18 3 0.18
19 3 0.18
20 11 0.65
ACGTcount: A:0.53, C:0.16, G:0.26, T:0.05
Consensus pattern (19 bp):
AACGAGAAAATAGGCCAAA
Found at i:36977280 original size:13 final size:13
Alignment explanation
Indices: 36977262--36977288 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
36977252 AAAGTAATCA
36977262 CACACGGGCGTGT
1 CACACGGGCGTGT
36977275 CACACGGGCGTGT
1 CACACGGGCGTGT
36977288 C
1 C
36977289 CCTGTCGACC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.15, C:0.33, G:0.37, T:0.15
Consensus pattern (13 bp):
CACACGGGCGTGT
Found at i:36981373 original size:44 final size:44
Alignment explanation
Indices: 36981323--36981515 Score: 184
Period size: 44 Copynumber: 4.5 Consensus size: 44
36981313 TGAATTATCA
*
36981323 TGTAAGACCGTGTCTGGGACACAGGCATCGAT-TTGAAATTTACG
1 TGTAAGACCATGTCTGGGACACAGGCATCGATATTG-AATTTACG
* * *
36981367 TGTAAGACCGTGTCTGGGGCACAGACATCGAT-TTGAAATTTACG
1 TGTAAGACCATGTCTGGGACACAGGCATCGATATTG-AATTTACG
*
36981411 TGTAAGACCATGTCTAGGACATC-GGCATC-ATATCTG-ATTT-CG
1 TGTAAGACCATGTCTGGGACA-CAGGCATCGATAT-TGAATTTACG
* * * * * * *
36981453 TATAAGACCCTGTTTGGGACAGAGGCATTGATACTGAA-TTACA
1 TGTAAGACCATGTCTGGGACACAGGCATCGATATTGAATTTACG
*
36981496 TGTAAGACCACGTCTGGGAC
1 TGTAAGACCATGTCTGGGAC
36981516 GTTGGCTTTA
Statistics
Matches: 124, Mismatches: 18, Indels: 15
0.79 0.11 0.10
Matches are distributed among these distances:
42 28 0.23
43 27 0.22
44 66 0.53
45 3 0.02
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.27
Consensus pattern (44 bp):
TGTAAGACCATGTCTGGGACACAGGCATCGATATTGAATTTACG
Found at i:36986408 original size:67 final size:64
Alignment explanation
Indices: 36986270--36986453 Score: 194
Period size: 64 Copynumber: 2.8 Consensus size: 64
36986260 ATATAGTTCG
* * * * * * *
36986270 GCTCTCTTGTAC-ACATGGTGAACGCTTAGTACCACCCATGTGACCTAGC--CAGTTTATCTCGT
1 GCTCTCTTGT-CTACATGGTGTACACATAGAACCACCCATGCGACCTAGCTACA-TATATCCCGT
36986332 A
64 A
* * *
36986333 GCTCTCTTGTCTACATGGTGTCCTTCACCTAGAACCACGCATGCGACCTAGCTACATATATCCCG
1 GCTCTCTTGTCTACATGGTG---TACACATAGAACCACCCATGCGACCTAGCTACATATATCCCG
36986398 TA
63 TA
* *
36986400 GCTCTCTTGTCTACATGGTGTACACATAGTATCACCCATGCGACCTAGCTACAT
1 GCTCTCTTGTCTACATGGTGTACACATAGAACCACCCATGCGACCTAGCTACAT
36986454 CATAATGCCT
Statistics
Matches: 101, Mismatches: 14, Indels: 11
0.80 0.11 0.09
Matches are distributed among these distances:
62 1 0.01
63 18 0.18
64 29 0.29
66 22 0.22
67 29 0.29
68 2 0.02
ACGTcount: A:0.23, C:0.30, G:0.17, T:0.29
Consensus pattern (64 bp):
GCTCTCTTGTCTACATGGTGTACACATAGAACCACCCATGCGACCTAGCTACATATATCCCGTA
Found at i:36988692 original size:31 final size:31
Alignment explanation
Indices: 36988649--36988732 Score: 134
Period size: 31 Copynumber: 2.7 Consensus size: 31
36988639 TTAGTCGTGA
*
36988649 CATAT-ACTGGGCCAAAGCCTTTCCATAAAT
1 CATATCACTGGGCCGAAGCCTTTCCATAAAT
*
36988679 CATATCACTGGGCCGAAGCCTTTTCATAAAT
1 CATATCACTGGGCCGAAGCCTTTCCATAAAT
*
36988710 CATATCACTGGACCGAAGCCTTT
1 CATATCACTGGGCCGAAGCCTTT
36988733 ACTGTAAATG
Statistics
Matches: 50, Mismatches: 3, Indels: 1
0.93 0.06 0.02
Matches are distributed among these distances:
30 5 0.10
31 45 0.90
ACGTcount: A:0.30, C:0.27, G:0.15, T:0.27
Consensus pattern (31 bp):
CATATCACTGGGCCGAAGCCTTTCCATAAAT
Found at i:36988803 original size:42 final size:42
Alignment explanation
Indices: 36988756--36988847 Score: 166
Period size: 42 Copynumber: 2.2 Consensus size: 42
36988746 TGGCCCTTAG
* *
36988756 GCCCATTTCAATGTCACATGTAATGTCAATGGATGTATGCAA
1 GCCCATTTCAATATCACATGTAATGTCAATGAATGTATGCAA
36988798 GCCCATTTCAATATCACATGTAATGTCAATGAATGTATGCAA
1 GCCCATTTCAATATCACATGTAATGTCAATGAATGTATGCAA
36988840 GCCCATTT
1 GCCCATTT
36988848 GAGGAGACTA
Statistics
Matches: 48, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
42 48 1.00
ACGTcount: A:0.32, C:0.21, G:0.16, T:0.32
Consensus pattern (42 bp):
GCCCATTTCAATATCACATGTAATGTCAATGAATGTATGCAA
Found at i:36989023 original size:25 final size:25
Alignment explanation
Indices: 36988995--36989064 Score: 88
Period size: 25 Copynumber: 2.8 Consensus size: 25
36988985 CTCTTTTAAT
36988995 AACTGGGGCAAAGCCC-TTTCTGATA
1 AACTGGGGCAAAGCCCTTTTC-GATA
* *
36989020 AACTAGGGCAAAGCCCTTTTCGGTA
1 AACTGGGGCAAAGCCCTTTTCGATA
* *
36989045 AACTGGGGCAGAGCCTTTTT
1 AACTGGGGCAAAGCCCTTTT
36989065 AACACTTCAT
Statistics
Matches: 39, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
25 35 0.90
26 4 0.10
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.26
Consensus pattern (25 bp):
AACTGGGGCAAAGCCCTTTTCGATA
Found at i:36989905 original size:27 final size:27
Alignment explanation
Indices: 36989875--36989939 Score: 78
Period size: 27 Copynumber: 2.4 Consensus size: 27
36989865 GGGCATATTC
36989875 GTCATTTTACCATACAAGGG-TATTACG
1 GTCATTTTACCATACAAGGGCT-TTACG
* * *
36989902 GTCACTTTACCCTACAGGGGCTTTACG
1 GTCATTTTACCATACAAGGGCTTTACG
*
36989929 GTCTTTTTACC
1 GTCATTTTACC
36989940 TATTAGGGGT
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
27 31 0.97
28 1 0.03
ACGTcount: A:0.22, C:0.25, G:0.18, T:0.35
Consensus pattern (27 bp):
GTCATTTTACCATACAAGGGCTTTACG
Found at i:36990096 original size:26 final size:27
Alignment explanation
Indices: 36989970--36990394 Score: 151
Period size: 27 Copynumber: 15.7 Consensus size: 27
36989960 TTTCATCCTA
* * * * *
36989970 CAAGGGTGTTTTCGTAAATTTACAAAC
1 CAAGGGTATTTTGGTAATTTTATAAAT
** * *
36989997 CAAGGGTATTTCAGTAATTTTGTAAAC
1 CAAGGGTATTTTGGTAATTTTATAAAT
* * *
36990024 CAATGGTATTTCT-ATAATTTTTAGAAAGT
1 CAAGGGTATTT-TGGTAA-TTTTATAAA-T
* * *
36990053 CAAGGGTATTTCT-ATAATTTTGTGAAT
1 CAAGGGTATTT-TGGTAATTTTATAAAT
*
36990080 C-AGGGTATTTTGGTAA-TTTACAAAT
1 CAAGGGTATTTTGGTAATTTTATAAAT
** * * *
36990105 TGAGGATATTTCGGTAATTTCATAAA-
1 CAAGGGTATTTTGGTAATTTTATAAAT
* * *
36990131 CTAGTGATATTTTGGTAATTTTACAAA-
1 CAAG-GGTATTTTGGTAATTTTATAAAT
* *
36990158 CTAAGGGTATTTTGGTAATTTTGTAAAC
1 C-AAGGGTATTTTGGTAATTTTATAAAT
* * *
36990186 CAATGGTATTTTAGTAATTTTGTAAAT
1 CAAGGGTATTTTGGTAATTTTATAAAT
**** * *
36990213 CAAGGGTAAAACGGTAATTCTGTAAAT
1 CAAGGGTATTTTGGTAATTTTATAAAT
* *** * * *
36990240 CGAGGGTAAAATGATAATTATGTAAAT
1 CAAGGGTATTTTGGTAATTTTATAAAT
** *** *
36990267 TGAGGGTAAAATGGTAATTCTATAAAT
1 CAAGGGTATTTTGGTAATTTTATAAAT
* **** *
36990294 CGAGGGTAAAACGGTAATTTTGTAAAT
1 CAAGGGTATTTTGGTAATTTTATAAAT
**** * *
36990321 CAAGGGTAAAACGGTAATTCTGTAAAT
1 CAAGGGTATTTTGGTAATTTTATAAAT
* * *
36990348 CGAGGGTACTTTGGTAATTTTACAAAT
1 CAAGGGTATTTTGGTAATTTTATAAAT
* ** *
36990375 TAAGGACATTTTAGTAATTT
1 CAAGGGTATTTTGGTAATTT
36990395 GGTAAACTAA
Statistics
Matches: 317, Mismatches: 72, Indels: 18
0.78 0.18 0.04
Matches are distributed among these distances:
25 7 0.02
26 27 0.09
27 251 0.79
28 16 0.05
29 16 0.05
ACGTcount: A:0.35, C:0.08, G:0.20, T:0.37
Consensus pattern (27 bp):
CAAGGGTATTTTGGTAATTTTATAAAT
Found at i:36990218 original size:54 final size:54
Alignment explanation
Indices: 36989978--36990238 Score: 215
Period size: 54 Copynumber: 4.8 Consensus size: 54
36989968 TACAAGGGTG
* * * *
36989978 TTTTCGTAAATTTACAAACCAAGGGTATTTCAGTAATTTTGTAAACCAATGGTA
1 TTTTAGTAATTTTACAAATCAAGGGTATTTCGGTAATTTTGTAAACCAATGGTA
* ** * * *
36990032 TTTCTA-TAATTTTTAGAAAGTCAAGGGTATTTCTATAATTTTGTGAATC-AGGGTA
1 TTT-TAGTAA-TTTTACAAA-TCAAGGGTATTTCGGTAATTTTGTAAACCAATGGTA
* ** * ** * * *
36990087 TTTTGGTAA-TTTACAAATTGAGGATATTTCGGTAATTTCATAAACTAGTGATA
1 TTTTAGTAATTTTACAAATCAAGGGTATTTCGGTAATTTTGTAAACCAATGGTA
* *
36990140 TTTTGGTAATTTTACAAA-CTAAGGGTATTTTGGTAATTTTGTAAACCAATGGTA
1 TTTTAGTAATTTTACAAATC-AAGGGTATTTCGGTAATTTTGTAAACCAATGGTA
** *** *
36990194 TTTTAGTAATTTTGTAAATCAAGGGTAAAACGGTAATTCTGTAAA
1 TTTTAGTAATTTTACAAATCAAGGGTATTTCGGTAATTTTGTAAA
36990239 TCGAGGGTAA
Statistics
Matches: 158, Mismatches: 41, Indels: 16
0.73 0.19 0.07
Matches are distributed among these distances:
52 19 0.12
53 19 0.12
54 76 0.48
55 20 0.13
56 24 0.15
ACGTcount: A:0.34, C:0.08, G:0.17, T:0.41
Consensus pattern (54 bp):
TTTTAGTAATTTTACAAATCAAGGGTATTTCGGTAATTTTGTAAACCAATGGTA
Found at i:36990229 original size:27 final size:27
Alignment explanation
Indices: 36990199--36990355 Score: 224
Period size: 27 Copynumber: 5.8 Consensus size: 27
36990189 TGGTATTTTA
* *
36990199 GTAATTTTGTAAATCAAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
*
36990226 GTAATTCTGTAAATCGAGGGTAAAATG
1 GTAATTCTGTAAATCGAGGGTAAAACG
* * * *
36990253 ATAATTATGTAAATTGAGGGTAAAATG
1 GTAATTCTGTAAATCGAGGGTAAAACG
*
36990280 GTAATTCTATAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
* *
36990307 GTAATTTTGTAAATCAAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
36990334 GTAATTCTGTAAATCGAGGGTA
1 GTAATTCTGTAAATCGAGGGTA
36990356 CTTTGGTAAT
Statistics
Matches: 114, Mismatches: 16, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 114 1.00
ACGTcount: A:0.39, C:0.07, G:0.24, T:0.30
Consensus pattern (27 bp):
GTAATTCTGTAAATCGAGGGTAAAACG
Found at i:36990363 original size:81 final size:81
Alignment explanation
Indices: 36990171--36990366 Score: 230
Period size: 81 Copynumber: 2.4 Consensus size: 81
36990161 AGGGTATTTT
* * * * * * * *
36990171 GGTAATTTTGTAAACCAATGGTATTTTAGTAATTTTGTAAATCAAGGGTAAAACGGTAATTCTGT
1 GGTAATTATGTAAATCGAGGGTAATTTGGTAATTCTATAAATCAAGGGTAAAACGGTAATTCTGT
* *
36990236 AAATCGAGGGTAAAAT
66 AAATCAAGGGTAAAAC
* * ** * *
36990252 GATAATTATGTAAATTGAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAACGGTAATTTTGT
1 GGTAATTATGTAAATCGAGGGTAATTTGGTAATTCTATAAATCAAGGGTAAAACGGTAATTCTGT
36990317 AAATCAAGGGTAAAAC
66 AAATCAAGGGTAAAAC
* *
36990333 GGTAATTCTGTAAATCGAGGGTACTTTGGTAATT
1 GGTAATTATGTAAATCGAGGGTAATTTGGTAATT
36990367 TTACAAATTA
Statistics
Matches: 93, Mismatches: 22, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
81 93 1.00
ACGTcount: A:0.37, C:0.07, G:0.22, T:0.33
Consensus pattern (81 bp):
GGTAATTATGTAAATCGAGGGTAATTTGGTAATTCTATAAATCAAGGGTAAAACGGTAATTCTGT
AAATCAAGGGTAAAAC
Found at i:36990368 original size:54 final size:54
Alignment explanation
Indices: 36990199--36990355 Score: 251
Period size: 54 Copynumber: 2.9 Consensus size: 54
36990189 TGGTATTTTA
36990199 GTAATTTTGTAAATCAAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAATG
1 GTAATTTTGTAAATCAAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAATG
* * ** * * *
36990253 ATAATTATGTAAATTGAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAACG
1 GTAATTTTGTAAATCAAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAATG
36990307 GTAATTTTGTAAATCAAGGGTAAAACGGTAATTCTGTAAATCGAGGGTA
1 GTAATTTTGTAAATCAAGGGTAAAACGGTAATTCTGTAAATCGAGGGTA
36990356 CTTTGGTAAT
Statistics
Matches: 90, Mismatches: 13, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
54 90 1.00
ACGTcount: A:0.39, C:0.07, G:0.24, T:0.30
Consensus pattern (54 bp):
GTAATTTTGTAAATCAAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAATG
Found at i:36992756 original size:42 final size:42
Alignment explanation
Indices: 36992709--36992788 Score: 133
Period size: 42 Copynumber: 1.9 Consensus size: 42
36992699 CTTAGGCCCA
* * *
36992709 TTTCAATGTCACATGTAATGTCAATGGATGTATGCAAGACCC
1 TTTCAATATCACATGTAATGTCAATGAATGTATACAAGACCC
36992751 TTTCAATATCACATGTAATGTCAATGAATGTATACAAG
1 TTTCAATATCACATGTAATGTCAATGAATGTATACAAG
36992789 CCCATTTGAG
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
42 35 1.00
ACGTcount: A:0.35, C:0.16, G:0.16, T:0.33
Consensus pattern (42 bp):
TTTCAATATCACATGTAATGTCAATGAATGTATACAAGACCC
Found at i:36992971 original size:25 final size:25
Alignment explanation
Indices: 36992943--36993012 Score: 106
Period size: 25 Copynumber: 2.8 Consensus size: 25
36992933 CTCTTTTAAT
36992943 AACTGGGGCAAAGCCC-TTTCTGATA
1 AACTGGGGCAAAGCCCTTTTC-GATA
*
36992968 AACTGGGGCAAAGCCCTTTTCGGTA
1 AACTGGGGCAAAGCCCTTTTCGATA
*
36992993 AACTGGGGCAGAGCCCTTTT
1 AACTGGGGCAAAGCCCTTTT
36993013 AACACTTCCT
Statistics
Matches: 42, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
25 38 0.90
26 4 0.10
ACGTcount: A:0.24, C:0.24, G:0.27, T:0.24
Consensus pattern (25 bp):
AACTGGGGCAAAGCCCTTTTCGATA
Found at i:37004995 original size:27 final size:27
Alignment explanation
Indices: 37004936--37005010 Score: 73
Period size: 27 Copynumber: 2.8 Consensus size: 27
37004926 CATATTCGTT
37004936 ATTTTACCATACAGGGGTATTACGGTC
1 ATTTTACCATACAGGGGTATTACGGTC
* * *
37004963 ACTTTACCCTGCAGGGGCT-TTACGGTC
1 ATTTTACCATACAGGGG-TATTACGGTC
* *
37004990 TTTTTACC-TATTAGGGGTATT
1 ATTTTACCATA-CAGGGGTATT
37005011 TTAGTCATTT
Statistics
Matches: 38, Mismatches: 7, Indels: 6
0.75 0.14 0.12
Matches are distributed among these distances:
26 2 0.05
27 35 0.92
28 1 0.03
ACGTcount: A:0.20, C:0.20, G:0.23, T:0.37
Consensus pattern (27 bp):
ATTTTACCATACAGGGGTATTACGGTC
Found at i:37005081 original size:27 final size:27
Alignment explanation
Indices: 37005051--37005253 Score: 142
Period size: 27 Copynumber: 7.4 Consensus size: 27
37005041 GTAAATCTAC
*
37005051 AAACCAAGGGTATTTCAGTAATTTTGT
1 AAACCAAGGGTATTTCAGTAATTTTAT
* *
37005078 AAACCAATGGTATTTCTA-TAATTTTTAG
1 AAACCAAGGGTATTTC-AGTAA-TTTTAT
** * *
37005106 AAAGTTAAGGGTATTTCTGTAATTTTAC
1 AAA-CCAAGGGTATTTCAGTAATTTTAT
*** * *
37005134 AAATTGAGGGTATTTC-GATAATTTCAC
1 AAACCAAGGGTATTTCAG-TAATTTTAT
** *
37005161 AAACC-AGTGGTATTTTGGTAATTTTAC
1 AAACCAAG-GGTATTTCAGTAATTTTAT
* ** *
37005188 AAACTAAGGGTATTTTGGTAATTTTGT
1 AAACCAAGGGTATTTCAGTAATTTTAT
* *
37005215 AAACCAAGGGTATTTTAGTAATTTTGT
1 AAACCAAGGGTATTTCAGTAATTTTAT
*
37005242 AAATCAAGGGTA
1 AAACCAAGGGTA
37005254 AAATGGTAAT
Statistics
Matches: 148, Mismatches: 20, Indels: 16
0.80 0.11 0.09
Matches are distributed among these distances:
26 3 0.02
27 113 0.76
28 19 0.13
29 13 0.09
ACGTcount: A:0.33, C:0.09, G:0.18, T:0.39
Consensus pattern (27 bp):
AAACCAAGGGTATTTCAGTAATTTTAT
Found at i:37005251 original size:54 final size:54
Alignment explanation
Indices: 37005028--37005253 Score: 163
Period size: 54 Copynumber: 4.1 Consensus size: 54
37005018 TTTCATCCTA
* * * * * ** *
37005028 CAAGGGTGTTTTGGTAAATCTACAAACCAAGGGTATTTCAGTAATTTTGTAAAC
1 CAAGGGTATTTTGGTAATTTTATAAACCAAGGGTATTTTAGTAATTTTACAAAT
* * * **
37005082 CAATGGTATTTCT-ATAATTTTTAGAAAGTTAAGGGTATTTCT-GTAATTTTACAAAT
1 CAAGGGTATTT-TGGTAA-TTTTATAAA-CCAAGGGTATTT-TAGTAATTTTACAAAT
** * * * * *
37005138 TGAGGGTATTTCGATAATTTCACAAACC-AGTGGTATTTTGGTAATTTTACAAA-
1 CAAGGGTATTTTGGTAATTTTATAAACCAAG-GGTATTTTAGTAATTTTACAAAT
* **
37005191 CTAAGGGTATTTTGGTAATTTTGTAAACCAAGGGTATTTTAGTAATTTTGTAAAT
1 C-AAGGGTATTTTGGTAATTTTATAAACCAAGGGTATTTTAGTAATTTTACAAAT
37005246 CAAGGGTA
1 CAAGGGTA
37005254 AAATGGTAAT
Statistics
Matches: 132, Mismatches: 30, Indels: 20
0.73 0.16 0.11
Matches are distributed among these distances:
53 3 0.02
54 79 0.60
55 17 0.13
56 33 0.25
ACGTcount: A:0.33, C:0.09, G:0.19, T:0.39
Consensus pattern (54 bp):
CAAGGGTATTTTGGTAATTTTATAAACCAAGGGTATTTTAGTAATTTTACAAAT
Found at i:37005262 original size:27 final size:27
Alignment explanation
Indices: 37005203--37005388 Score: 203
Period size: 27 Copynumber: 6.9 Consensus size: 27
37005193 AAGGGTATTT
* * ***
37005203 TGGTAATTTTGTAAACCAAGGGTATTT
1 TGGTAATTCTGTAAATCAAGGGTAAAA
* *
37005230 TAGTAATTTTGTAAATCAAGGGTAAAA
1 TGGTAATTCTGTAAATCAAGGGTAAAA
*
37005257 TGGTAATTCTGTAAATCGAGGGTAAAA
1 TGGTAATTCTGTAAATCAAGGGTAAAA
* *
37005284 TGATAATTCTGTAAATTGAA-GGTAAAA
1 TGGTAATTCTGTAAA-TCAAGGGTAAAA
* * *
37005311 TAGTAATTCTATAAATCGAGGGTAAAA
1 TGGTAATTCTGTAAATCAAGGGTAAAA
* *
37005338 CGGTAATTCTATAAATCAAGGGTAAAA
1 TGGTAATTCTGTAAATCAAGGGTAAAA
* *
37005365 TGGTAATTCTATAAATCGAGGGTA
1 TGGTAATTCTGTAAATCAAGGGTA
37005389 CTTTGGTAAT
Statistics
Matches: 136, Mismatches: 21, Indels: 4
0.84 0.13 0.02
Matches are distributed among these distances:
26 2 0.01
27 132 0.97
28 2 0.01
ACGTcount: A:0.40, C:0.07, G:0.21, T:0.32
Consensus pattern (27 bp):
TGGTAATTCTGTAAATCAAGGGTAAAA
Found at i:37005398 original size:81 final size:81
Alignment explanation
Indices: 37005203--37005399 Score: 232
Period size: 81 Copynumber: 2.4 Consensus size: 81
37005193 AAGGGTATTT
* * * * * * * *
37005203 TGGTAATTTTGTAAACCAAGGGTATTTTAGTAATTTTGTAAATCAAGGGTAAAATGGTAATTCTG
1 TGGTAATTCTGTAAATCGAGGGTAATTTAGTAATTCTATAAATCAAGGGTAAAACGGTAATTCTA
*
37005268 TAAATCGAGGGTAAAA
66 TAAATCAAGGGTAAAA
* * * ** *
37005284 TGATAATTCTGTAAATTGAAGGTAAAATAGTAATTCTATAAATCGAGGGTAAAACGGTAATTCTA
1 TGGTAATTCTGTAAATCGAGGGTAATTTAGTAATTCTATAAATCAAGGGTAAAACGGTAATTCTA
37005349 TAAATCAAGGGTAAAA
66 TAAATCAAGGGTAAAA
* * *
37005365 TGGTAATTCTATAAATCGAGGGTACTTTGGTAATT
1 TGGTAATTCTGTAAATCGAGGGTAATTTAGTAATT
37005400 TTACAAATTG
Statistics
Matches: 93, Mismatches: 23, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
81 93 1.00
ACGTcount: A:0.39, C:0.07, G:0.21, T:0.34
Consensus pattern (81 bp):
TGGTAATTCTGTAAATCGAGGGTAATTTAGTAATTCTATAAATCAAGGGTAAAACGGTAATTCTA
TAAATCAAGGGTAAAA
Found at i:37005399 original size:27 final size:27
Alignment explanation
Indices: 37005232--37005388 Score: 215
Period size: 27 Copynumber: 5.8 Consensus size: 27
37005222 GGGTATTTTA
* *
37005232 GTAATTTTGTAAATCAAGGGTAAAATG
1 GTAATTCTGTAAATCGAGGGTAAAATG
37005259 GTAATTCTGTAAATCGAGGGTAAAATG
1 GTAATTCTGTAAATCGAGGGTAAAATG
* * * *
37005286 ATAATTCTGTAAATTGAAGGTAAAATA
1 GTAATTCTGTAAATCGAGGGTAAAATG
* *
37005313 GTAATTCTATAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAATG
* *
37005340 GTAATTCTATAAATCAAGGGTAAAATG
1 GTAATTCTGTAAATCGAGGGTAAAATG
*
37005367 GTAATTCTATAAATCGAGGGTA
1 GTAATTCTGTAAATCGAGGGTA
37005389 CTTTGGTAAT
Statistics
Matches: 115, Mismatches: 15, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 115 1.00
ACGTcount: A:0.41, C:0.07, G:0.21, T:0.31
Consensus pattern (27 bp):
GTAATTCTGTAAATCGAGGGTAAAATG
Found at i:37005407 original size:27 final size:27
Alignment explanation
Indices: 37005232--37005412 Score: 182
Period size: 27 Copynumber: 6.7 Consensus size: 27
37005222 GGGTATTTTA
* *
37005232 GTAATTTTGTAAATCAAGGGTAAAATG
1 GTAATTTTATAAATCGAGGGTAAAATG
* *
37005259 GTAATTCTGTAAATCGAGGGTAAAATG
1 GTAATTTTATAAATCGAGGGTAAAATG
* * * * * *
37005286 ATAATTCTGTAAATTGAAGGTAAAATA
1 GTAATTTTATAAATCGAGGGTAAAATG
* *
37005313 GTAATTCTATAAATCGAGGGTAAAACG
1 GTAATTTTATAAATCGAGGGTAAAATG
* *
37005340 GTAATTCTATAAATCAAGGGTAAAATG
1 GTAATTTTATAAATCGAGGGTAAAATG
* ***
37005367 GTAATTCTATAAATCGAGGGTACTTTG
1 GTAATTTTATAAATCGAGGGTAAAATG
* *
37005394 GTAATTTTACAAATTGAGG
1 GTAATTTTATAAATCGAGG
37005413 ACATTTTAGT
Statistics
Matches: 133, Mismatches: 21, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 133 1.00
ACGTcount: A:0.40, C:0.07, G:0.21, T:0.32
Consensus pattern (27 bp):
GTAATTTTATAAATCGAGGGTAAAATG
Found at i:37007708 original size:31 final size:31
Alignment explanation
Indices: 37007668--37007751 Score: 98
Period size: 31 Copynumber: 2.7 Consensus size: 31
37007658 TTAGCCTTGA
* *
37007668 CATAT-ACTGGTCCGAAGCCTTTCCATCAAT
1 CATATCACTGGACCGAAGCCTTTCCATAAAT
* **
37007698 CATATCACTGGGCCGAAGCCTTTTTATAAAT
1 CATATCACTGGACCGAAGCCTTTCCATAAAT
* *
37007729 CATATCACTAGACCGATGCCTTT
1 CATATCACTGGACCGAAGCCTTT
37007752 ACTGTAAACG
Statistics
Matches: 46, Mismatches: 7, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
30 5 0.11
31 41 0.89
ACGTcount: A:0.27, C:0.27, G:0.14, T:0.31
Consensus pattern (31 bp):
CATATCACTGGACCGAAGCCTTTCCATAAAT
Found at i:37007820 original size:42 final size:42
Alignment explanation
Indices: 37007773--37007865 Score: 168
Period size: 42 Copynumber: 2.2 Consensus size: 42
37007763 TATGGCCCTT
* *
37007773 AGCCCATTTCAATGTCACATGTAATGTCAATGGATGTATGCA
1 AGCCCATTTCAATATCACATGTAATGTCAATGAATGTATGCA
37007815 AGCCCATTTCAATATCACATGTAATGTCAATGAATGTATGCA
1 AGCCCATTTCAATATCACATGTAATGTCAATGAATGTATGCA
37007857 AGCCCATTT
1 AGCCCATTT
37007866 GGGTAGACTA
Statistics
Matches: 49, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
42 49 1.00
ACGTcount: A:0.32, C:0.20, G:0.16, T:0.31
Consensus pattern (42 bp):
AGCCCATTTCAATATCACATGTAATGTCAATGAATGTATGCA
Found at i:37008041 original size:25 final size:25
Alignment explanation
Indices: 37008013--37008082 Score: 97
Period size: 25 Copynumber: 2.8 Consensus size: 25
37008003 CTCTTTTAAT
37008013 AACTGGGGCAAAGCCC-TTTCTGATA
1 AACTGGGGCAAAGCCCTTTTC-GATA
*
37008038 AACTGGGGCAAAGCCCTTTTCGGTA
1 AACTGGGGCAAAGCCCTTTTCGATA
* *
37008063 AATTGGGGCAGAGCCCTTTT
1 AACTGGGGCAAAGCCCTTTT
37008083 AACACTTCCT
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
25 37 0.90
26 4 0.10
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.26
Consensus pattern (25 bp):
AACTGGGGCAAAGCCCTTTTCGATA
Found at i:37009237 original size:54 final size:54
Alignment explanation
Indices: 37008987--37009239 Score: 226
Period size: 54 Copynumber: 4.6 Consensus size: 54
37008977 TTTCATCCTA
* * * * *
37008987 CAAGGGTGTTTTGGTAAATCTACAAACCAAGGGTATTTC-AGTAATTTTGTAAAC
1 CAAGGGTATTTTAGTAATTTTACAAATCAAGGGTATTTCGA-TAATTTTGTAAAC
* * ** *
37009041 CAATGGTATTTCTA-TAATTTTTAGAAAGTCAAGGGTATTTTTATAATTTTGTAAAT
1 CAAGGGTATTT-TAGTAA-TTTTACAAA-TCAAGGGTATTTCGATAATTTTGTAAAC
* * ** ***
37009097 CAGGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCGATAATTTCACAAAC
1 CAAGGGTATTTTAGTAATTTTACAAATCAAGGGTATTTCGATAATTTTGTAAAC
* * *
37009151 C-AGTGGTATTTTGGTAATTTTACAAA-CTAAGGGTATTTTGGTAATTTTGTAAAC
1 CAAG-GGTATTTTAGTAATTTTACAAATC-AAGGGTATTTCGATAATTTTGTAAAC
**
37009205 CAAGGGTATTTTAGTAATTTTGTAAATCAAGGGTA
1 CAAGGGTATTTTAGTAATTTTACAAATCAAGGGTA
37009240 AAACGGTAAT
Statistics
Matches: 158, Mismatches: 32, Indels: 18
0.76 0.15 0.09
Matches are distributed among these distances:
53 1 0.01
54 102 0.65
55 19 0.12
56 35 0.22
57 1 0.01
ACGTcount: A:0.32, C:0.09, G:0.19, T:0.40
Consensus pattern (54 bp):
CAAGGGTATTTTAGTAATTTTACAAATCAAGGGTATTTCGATAATTTTGTAAAC
Found at i:37009339 original size:27 final size:27
Alignment explanation
Indices: 37008987--37009339 Score: 183
Period size: 27 Copynumber: 13.0 Consensus size: 27
37008977 TTTCATCCTA
* * * * *
37008987 CAAGGGTGTTTTGGTAAATCTACAAAC
1 CAAGGGTATTTTGGTAATTTTATAAAT
** * *
37009014 CAAGGGTATTTCAGTAATTTTGTAAAC
1 CAAGGGTATTTTGGTAATTTTATAAAT
* * *
37009041 CAATGGTATTTCT-ATAATTTTTAGAAAGT
1 CAAGGGTATTT-TGGTAA-TTTTATAAA-T
** *
37009070 CAAGGGTATTTTTATAATTTTGTAAAT
1 CAAGGGTATTTTGGTAATTTTATAAAT
* *
37009097 CAGGGGTATTTTGGTAATTTTACAAAT
1 CAAGGGTATTTTGGTAATTTTATAAAT
** * * * *
37009124 TGAGGGTATTTCGATAATTTCACAAA-
1 CAAGGGTATTTTGGTAATTTTATAAAT
* *
37009150 CCAGTGGTATTTTGGTAATTTTACAAA-
1 CAAG-GGTATTTTGGTAATTTTATAAAT
* *
37009177 CTAAGGGTATTTTGGTAATTTTGTAAAC
1 C-AAGGGTATTTTGGTAATTTTATAAAT
* *
37009205 CAAGGGTATTTTAGTAATTTTGTAAAT
1 CAAGGGTATTTTGGTAATTTTATAAAT
**** * *
37009232 CAAGGGTAAAACGGTAATTCTGTAAAT
1 CAAGGGTATTTTGGTAATTTTATAAAT
** **** *
37009259 CGTGGGTAAAACGGTAATTCTATAAAT
1 CAAGGGTATTTTGGTAATTTTATAAAT
*** *
37009286 CAAGGGTAAAACT-GTAATTTTGTAAAT
1 CAAGGGT-ATTTTGGTAATTTTATAAAT
* * *
37009313 CGAGGGTACTTTGGTAATTTTACAAAT
1 CAAGGGTATTTTGGTAATTTTATAAAT
37009340 TGAGGACATT
Statistics
Matches: 259, Mismatches: 58, Indels: 18
0.77 0.17 0.05
Matches are distributed among these distances:
26 4 0.02
27 220 0.85
28 21 0.08
29 14 0.05
ACGTcount: A:0.34, C:0.09, G:0.20, T:0.38
Consensus pattern (27 bp):
CAAGGGTATTTTGGTAATTTTATAAAT
Found at i:37018027 original size:47 final size:47
Alignment explanation
Indices: 37017963--37018084 Score: 140
Period size: 47 Copynumber: 2.6 Consensus size: 47
37017953 ACATAATAAC
* * * *
37017963 GCCATAGCCCAGCTATGGTCTTACAC-GTAATCACATATCTC-ACTGAT
1 GCCATATCCCAGATATGGTCTTACACAGT-AGCACATATCACAAC-GAT
* * *
37018010 GTCATATCCCAGATATGGTCTTATACAGTAGCATATATCACAACGAT
1 GCCATATCCCAGATATGGTCTTACACAGTAGCACATATCACAACGAT
*
37018057 GCCATATCCCAGATATGGTCTTATACAG
1 GCCATATCCCAGATATGGTCTTACACAG
37018085 AAATCACTTG
Statistics
Matches: 65, Mismatches: 8, Indels: 4
0.84 0.10 0.05
Matches are distributed among these distances:
47 61 0.94
48 4 0.06
ACGTcount: A:0.30, C:0.25, G:0.16, T:0.29
Consensus pattern (47 bp):
GCCATATCCCAGATATGGTCTTACACAGTAGCACATATCACAACGAT
Found at i:37018143 original size:31 final size:31
Alignment explanation
Indices: 37018108--37018347 Score: 331
Period size: 31 Copynumber: 7.7 Consensus size: 31
37018098 CTTGTCACTT
*
37018108 GTAGCCAAAGCTACCACTATTCACTGATCAG
1 GTAGCCAAAGCTACCACTTTTCACTGATCAG
**** *
37018139 GTAGCTGGTGCTACCATTTTTCACTGATCAG
1 GTAGCCAAAGCTACCACTTTTCACTGATCAG
*
37018170 GTAGCCAGAGCTACCACTTTTCACTGATCAG
1 GTAGCCAAAGCTACCACTTTTCACTGATCAG
*
37018201 GTAGCCGAAGCTACCACTTTTCACTGATCAG
1 GTAGCCAAAGCTACCACTTTTCACTGATCAG
*
37018232 GTAGCCAAAGCTACCACTTTTCACTGATTAG
1 GTAGCCAAAGCTACCACTTTTCACTGATCAG
*
37018263 GTAG-TAGAAGCTACCACTTTTCACTGATCAG
1 GTAGCCA-AAGCTACCACTTTTCACTGATCAG
*
37018294 GTAGCTGAAA-CTACCACTTTTCACTGATCAG
1 GTAGC-CAAAGCTACCACTTTTCACTGATCAG
**
37018325 GTAGCTGAAGCTACCACTTTTCA
1 GTAGCCAAAGCTACCACTTTTCA
37018348 GTTGTCATTT
Statistics
Matches: 186, Mismatches: 19, Indels: 8
0.87 0.09 0.04
Matches are distributed among these distances:
30 3 0.02
31 180 0.97
32 2 0.01
33 1 0.01
ACGTcount: A:0.27, C:0.26, G:0.18, T:0.28
Consensus pattern (31 bp):
GTAGCCAAAGCTACCACTTTTCACTGATCAG
Found at i:37018205 original size:62 final size:62
Alignment explanation
Indices: 37018108--37018347 Score: 376
Period size: 62 Copynumber: 3.9 Consensus size: 62
37018098 CTTGTCACTT
* ** *
37018108 GTAGCCAAAGCTACCACTATTCACTGATCAGGTAGCTGGTGCTACCATTTTTCACTGATCAG
1 GTAGCCAAAGCTACCACTTTTCACTGATCAGGTAGCTGAAGCTACCACTTTTCACTGATCAG
* *
37018170 GTAGCCAGAGCTACCACTTTTCACTGATCAGGTAGCCGAAGCTACCACTTTTCACTGATCAG
1 GTAGCCAAAGCTACCACTTTTCACTGATCAGGTAGCTGAAGCTACCACTTTTCACTGATCAG
*
37018232 GTAGCCAAAGCTACCACTTTTCACTGATTAGGTAG-TAGAAGCTACCACTTTTCACTGATCAG
1 GTAGCCAAAGCTACCACTTTTCACTGATCAGGTAGCT-GAAGCTACCACTTTTCACTGATCAG
*
37018294 GTAGCTGAAA-CTACCACTTTTCACTGATCAGGTAGCTGAAGCTACCACTTTTCA
1 GTAGC-CAAAGCTACCACTTTTCACTGATCAGGTAGCTGAAGCTACCACTTTTCA
37018348 GTTGTCATTT
Statistics
Matches: 164, Mismatches: 11, Indels: 6
0.91 0.06 0.03
Matches are distributed among these distances:
62 160 0.98
63 4 0.02
ACGTcount: A:0.27, C:0.26, G:0.18, T:0.28
Consensus pattern (62 bp):
GTAGCCAAAGCTACCACTTTTCACTGATCAGGTAGCTGAAGCTACCACTTTTCACTGATCAG
Found at i:37018275 original size:93 final size:93
Alignment explanation
Indices: 37018108--37018347 Score: 365
Period size: 93 Copynumber: 2.6 Consensus size: 93
37018098 CTTGTCACTT
* * ** *
37018108 GTAGCCAAAGCTACCACTATTCACTGATCAGGTAGCTGGTGCTACCATTTTTCACTGATCAGGTA
1 GTAGCCGAAGCTACCACTTTTCACTGATCAGGTAGCTGAAGCTACCACTTTTCACTGATCAGGTA
37018173 GCCAGAGCTACCACTTTTCACTGATCAG
66 GCCAGAGCTACCACTTTTCACTGATCAG
** *
37018201 GTAGCCGAAGCTACCACTTTTCACTGATCAGGTAGCCAAAGCTACCACTTTTCACTGATTAGGTA
1 GTAGCCGAAGCTACCACTTTTCACTGATCAGGTAGCTGAAGCTACCACTTTTCACTGATCAGGTA
*
37018266 G-TAGAAGCTACCACTTTTCACTGATCAG
66 GCCAG-AGCTACCACTTTTCACTGATCAG
* *
37018294 GTAGCTGAAACTACCACTTTTCACTGATCAGGTAGCTGAAGCTACCACTTTTCA
1 GTAGCCGAAGCTACCACTTTTCACTGATCAGGTAGCTGAAGCTACCACTTTTCA
37018348 GTTGTCATTT
Statistics
Matches: 133, Mismatches: 13, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
92 2 0.02
93 131 0.98
ACGTcount: A:0.27, C:0.26, G:0.18, T:0.28
Consensus pattern (93 bp):
GTAGCCGAAGCTACCACTTTTCACTGATCAGGTAGCTGAAGCTACCACTTTTCACTGATCAGGTA
GCCAGAGCTACCACTTTTCACTGATCAG
Found at i:37018431 original size:50 final size:50
Alignment explanation
Indices: 37018325--37018501 Score: 257
Period size: 50 Copynumber: 3.5 Consensus size: 50
37018315 CACTGATCAG
* * * *
37018325 GTAGCTGAAGCTACCACTTTTCAGTTGTCATTTG-CCATTGATCAGATAAGT
1 GTAGCCGAAGCTATCACTTATCACTT-TCATTTGTCC-TTGATCAGATAAGT
* *
37018376 GTAGCCGAAGCTATCACTTATCACTTTCACTTGTCCTTAATCAGATAAGT
1 GTAGCCGAAGCTATCACTTATCACTTTCATTTGTCCTTGATCAGATAAGT
* *
37018426 GTAGCCGAAGTTATTACTTATCACTTTCATTTGTCCTTGATCAGATAAGT
1 GTAGCCGAAGCTATCACTTATCACTTTCATTTGTCCTTGATCAGATAAGT
37018476 GTAGCCGAAGCTATCACTTATCACTT
1 GTAGCCGAAGCTATCACTTATCACTT
37018502 GTTTCCATGG
Statistics
Matches: 113, Mismatches: 12, Indels: 3
0.88 0.09 0.02
Matches are distributed among these distances:
50 89 0.79
51 24 0.21
ACGTcount: A:0.27, C:0.21, G:0.16, T:0.36
Consensus pattern (50 bp):
GTAGCCGAAGCTATCACTTATCACTTTCATTTGTCCTTGATCAGATAAGT
Found at i:37025413 original size:94 final size:94
Alignment explanation
Indices: 37025252--37025533 Score: 555
Period size: 94 Copynumber: 3.0 Consensus size: 94
37025242 TGGAATGTCG
*
37025252 AACCCAAAGGAACTAAAAGTACTAGTAATGACTGTCTTTTTATTACCTAGCCTAAGAATAATGGG
1 AACCCAAAGGAACTAAAAGTACTAGTAATGACTGTCTTTTTATTATCTAGCCTAAGAATAATGGG
37025317 GTTTTGTTTTAATTAACTAATTATCTAAA
66 GTTTTGTTTTAATTAACTAATTATCTAAA
37025346 AACCCAAAGGAACTAAAAGTACTAGTAATGACTGTCTTTTTATTATCTAGCCTAAGAATAATGGG
1 AACCCAAAGGAACTAAAAGTACTAGTAATGACTGTCTTTTTATTATCTAGCCTAAGAATAATGGG
37025411 GTTTTGTTTTAATTAACTAATTATCTAAA
66 GTTTTGTTTTAATTAACTAATTATCTAAA
37025440 AACCCAAAGGAACTAAAAGTACTAGTAATGACTGTCTTTTTATTATCTAGCCTAAGAATAATGGG
1 AACCCAAAGGAACTAAAAGTACTAGTAATGACTGTCTTTTTATTATCTAGCCTAAGAATAATGGG
37025505 GTTTTGTTTTAATTAACTAATTATCTAAA
66 GTTTTGTTTTAATTAACTAATTATCTAAA
37025534 CTAAGAACTC
Statistics
Matches: 187, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
94 187 1.00
ACGTcount: A:0.37, C:0.13, G:0.14, T:0.36
Consensus pattern (94 bp):
AACCCAAAGGAACTAAAAGTACTAGTAATGACTGTCTTTTTATTATCTAGCCTAAGAATAATGGG
GTTTTGTTTTAATTAACTAATTATCTAAA
Found at i:37026837 original size:20 final size:20
Alignment explanation
Indices: 37026799--37026838 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
37026789 TTTTCAATTT
*
37026799 TGAAAAGTTTGATTAAGTTC
1 TGAAAAGTTTGAATAAGTTC
* *
37026819 TGAAAATTTTGAATGAGTTC
1 TGAAAAGTTTGAATAAGTTC
37026839 GGTTTAGTCC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.35, C:0.05, G:0.20, T:0.40
Consensus pattern (20 bp):
TGAAAAGTTTGAATAAGTTC
Found at i:37028682 original size:36 final size:36
Alignment explanation
Indices: 37028635--37028706 Score: 108
Period size: 36 Copynumber: 2.0 Consensus size: 36
37028625 ATGCAAGAAC
* *
37028635 TGTCTGTTAATGATTCAAGATACTTGTTTTCCTGCT
1 TGTCTATTAATGATTCAAGATACCTGTTTTCCTGCT
**
37028671 TGTCTATTAATGATTTGAGATACCTGTTTTCCTGCT
1 TGTCTATTAATGATTCAAGATACCTGTTTTCCTGCT
37028707 GATCTGATGC
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
36 32 1.00
ACGTcount: A:0.19, C:0.17, G:0.17, T:0.47
Consensus pattern (36 bp):
TGTCTATTAATGATTCAAGATACCTGTTTTCCTGCT
Found at i:37033109 original size:42 final size:43
Alignment explanation
Indices: 37033007--37033153 Score: 120
Period size: 42 Copynumber: 3.4 Consensus size: 43
37032997 AATTATCGTG
* * * * * *
37033007 TAAGACCGTGTCTGGGACACAGACATCGAT-TTGAAATTTACGTG
1 TAAGACCATGTCTGGGACAGAGGCATCGATACTG-AA-TTACATA
* ** *
37033051 TAAGACCATGTTTGGGACATCGGCATCG-TATCTG-ATTTCATA
1 TAAGACCATGTCTGGGACAGAGGCATCGATA-CTGAATTACATA
* *
37033093 TAAGACCCTGTCTGGGACAGAGGCATCGATACTGAATTACATG
1 TAAGACCATGTCTGGGACAGAGGCATCGATACTGAATTACATA
* *
37033136 TAAGACCACGTCTAGGAC
1 TAAGACCATGTCTGGGAC
37033154 GTTGGCATTA
Statistics
Matches: 81, Mismatches: 18, Indels: 9
0.75 0.17 0.08
Matches are distributed among these distances:
42 31 0.38
43 25 0.31
44 23 0.28
45 2 0.02
ACGTcount: A:0.29, C:0.20, G:0.24, T:0.27
Consensus pattern (43 bp):
TAAGACCATGTCTGGGACAGAGGCATCGATACTGAATTACATA
Found at i:37035123 original size:38 final size:38
Alignment explanation
Indices: 37035067--37035191 Score: 187
Period size: 38 Copynumber: 3.3 Consensus size: 38
37035057 TTAGGCCCGA
*
37035067 ATATATTTCTAGCACATAGCCTGCGGACCTCAAGTCCGG
1 ATATA-TTCCAGCACATAGCCTGCGGACCTCAAGTCCGG
*
37035106 ATATATTCCAGCACATAGCCTACGGACCTCAAGTCCGG
1 ATATATTCCAGCACATAGCCTGCGGACCTCAAGTCCGG
* * *
37035144 ATATGTTCCAGCACGTAGCCTGCGGACCTCAAGTCTGG
1 ATATATTCCAGCACATAGCCTGCGGACCTCAAGTCCGG
*
37035182 ATATGTTCCA
1 ATATATTCCA
37035192 AATACCACGC
Statistics
Matches: 80, Mismatches: 6, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
38 75 0.94
39 5 0.06
ACGTcount: A:0.26, C:0.29, G:0.21, T:0.25
Consensus pattern (38 bp):
ATATATTCCAGCACATAGCCTGCGGACCTCAAGTCCGG
Found at i:37037587 original size:10 final size:11
Alignment explanation
Indices: 37037564--37037608 Score: 58
Period size: 10 Copynumber: 4.1 Consensus size: 11
37037554 AAACCCCTAC
37037564 TATTTATCTTT
1 TATTTATCTTT
37037575 TATTTAT-TTT
1 TATTTATCTTT
37037585 TATTTTTATC-TT
1 TA--TTTATCTTT
37037597 TATTTATCTTT
1 TATTTATCTTT
37037608 T
1 T
37037609 TAACTTACTT
Statistics
Matches: 30, Mismatches: 0, Indels: 8
0.79 0.00 0.21
Matches are distributed among these distances:
10 11 0.37
11 10 0.33
12 9 0.30
ACGTcount: A:0.18, C:0.07, G:0.00, T:0.76
Consensus pattern (11 bp):
TATTTATCTTT
Found at i:37037600 original size:18 final size:18
Alignment explanation
Indices: 37037577--37037623 Score: 51
Period size: 18 Copynumber: 2.6 Consensus size: 18
37037567 TTATCTTTTA
*
37037577 TTTATTTTTATTTTTATC
1 TTTATTTTTATTTTTAAC
* *
37037595 TTTATTTATCTTTTTAAC
1 TTTATTTTTATTTTTAAC
37037613 -TTACTTTTTAT
1 TTTA-TTTTTAT
37037624 CCTATTTCTC
Statistics
Matches: 23, Mismatches: 5, Indels: 2
0.77 0.17 0.07
Matches are distributed among these distances:
17 3 0.13
18 20 0.87
ACGTcount: A:0.19, C:0.09, G:0.00, T:0.72
Consensus pattern (18 bp):
TTTATTTTTATTTTTAAC
Found at i:37046145 original size:27 final size:27
Alignment explanation
Indices: 37046107--37046161 Score: 110
Period size: 27 Copynumber: 2.0 Consensus size: 27
37046097 ATTCGCTACC
37046107 TCCTGCGATTGTTATTAATCAAAATCT
1 TCCTGCGATTGTTATTAATCAAAATCT
37046134 TCCTGCGATTGTTATTAATCAAAATCT
1 TCCTGCGATTGTTATTAATCAAAATCT
37046161 T
1 T
37046162 ACTCCGCGCA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.29, C:0.18, G:0.11, T:0.42
Consensus pattern (27 bp):
TCCTGCGATTGTTATTAATCAAAATCT
Found at i:37057394 original size:19 final size:20
Alignment explanation
Indices: 37057357--37057394 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
37057347 ATAAGGTGGT
37057357 AAGATGATGAATGATGTTTA
1 AAGATGATGAATGATGTTTA
37057377 AAGATG-TGATAT-ATGTTT
1 AAGATGATGA-ATGATGTTT
37057395 TGGTGGTACC
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.37, C:0.00, G:0.24, T:0.39
Consensus pattern (20 bp):
AAGATGATGAATGATGTTTA
Found at i:37066992 original size:38 final size:38
Alignment explanation
Indices: 37066940--37067017 Score: 138
Period size: 38 Copynumber: 2.1 Consensus size: 38
37066930 TATTATCATG
37066940 AAATATTATACTTTGTGGTTATTATTGAGTAACATACA
1 AAATATTATACTTTGTGGTTATTATTGAGTAACATACA
* *
37066978 AAATATTATGCTTTGTGGTTATTATTGAGTAATATACA
1 AAATATTATACTTTGTGGTTATTATTGAGTAACATACA
37067016 AA
1 AA
37067018 TTATGTGAGC
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
38 38 1.00
ACGTcount: A:0.37, C:0.06, G:0.14, T:0.42
Consensus pattern (38 bp):
AAATATTATACTTTGTGGTTATTATTGAGTAACATACA
Found at i:37067881 original size:15 final size:16
Alignment explanation
Indices: 37067861--37067890 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
37067851 AGAAAATTCC
37067861 AAAATGGG-CTAAATA
1 AAAATGGGACTAAATA
37067876 AAAATGGGACTAAAT
1 AAAATGGGACTAAAT
37067891 TGGAATATCT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 8 0.57
16 6 0.43
ACGTcount: A:0.53, C:0.07, G:0.20, T:0.20
Consensus pattern (16 bp):
AAAATGGGACTAAATA
Found at i:37068322 original size:18 final size:18
Alignment explanation
Indices: 37068299--37068343 Score: 90
Period size: 18 Copynumber: 2.5 Consensus size: 18
37068289 AGAGAAAGTA
37068299 TTAATTGAGAAAATTATC
1 TTAATTGAGAAAATTATC
37068317 TTAATTGAGAAAATTATC
1 TTAATTGAGAAAATTATC
37068335 TTAATTGAG
1 TTAATTGAG
37068344 GGGTTAATTG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 27 1.00
ACGTcount: A:0.42, C:0.04, G:0.13, T:0.40
Consensus pattern (18 bp):
TTAATTGAGAAAATTATC
Found at i:37072414 original size:13 final size:13
Alignment explanation
Indices: 37072396--37072420 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
37072386 ATTTACAAGA
37072396 TTACATAATCAAT
1 TTACATAATCAAT
37072409 TTACATAATCAA
1 TTACATAATCAA
37072421 GTCCAATCTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.16, G:0.00, T:0.36
Consensus pattern (13 bp):
TTACATAATCAAT
Found at i:37088010 original size:37 final size:37
Alignment explanation
Indices: 37087953--37088071 Score: 163
Period size: 37 Copynumber: 3.2 Consensus size: 37
37087943 TATGATCACT
*
37087953 TATCAC-TTGTC-CCTGATCAGATAAGTGTAGCCAAC
1 TATCACTTTGTCTCTTGATCAGATAAGTGTAGCCAAC
*
37087988 TATCACTTTGTTTCTTGATCAGATAAGTGTAGCC-AC
1 TATCACTTTGTCTCTTGATCAGATAAGTGTAGCCAAC
*
37088024 TTATCACTTTGTCTCTTGATCAGATAAGTATAGCCGAAGC
1 -TATCACTTTGTCTCTTGATCAGATAAGTGTAGCC-AA-C
37088064 TATCACTT
1 TATCACTT
37088072 ATCACTTTTC
Statistics
Matches: 74, Mismatches: 4, Indels: 8
0.86 0.05 0.09
Matches are distributed among these distances:
35 6 0.08
36 6 0.08
37 52 0.70
39 9 0.12
40 1 0.01
ACGTcount: A:0.27, C:0.22, G:0.16, T:0.35
Consensus pattern (37 bp):
TATCACTTTGTCTCTTGATCAGATAAGTGTAGCCAAC
Found at i:37088100 original size:52 final size:52
Alignment explanation
Indices: 37088021--37088295 Score: 505
Period size: 52 Copynumber: 5.2 Consensus size: 52
37088011 TAAGTGTAGC
* * *
37088021 CACTTATCACTTTGTCTCTTGATCAGATAAGTATAGCCGAAGCTATCACTTAT
1 CACTTTTCAC-TTGTCACTTGATCAGATAAGTGTAGCCGAAGCTATCACTTAT
37088074 CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTATCACTTAT
1 CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTATCACTTAT
37088126 CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTATCACTTAT
1 CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTATCACTTAT
37088178 CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTATCACTTAT
1 CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTATCACTTAT
37088230 CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTATCACTTAT
1 CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTATCACTTAT
37088282 CACTTTGTCACTTG
1 CACTTT-TCACTTG
37088296 ATCAGAAGTA
Statistics
Matches: 218, Mismatches: 3, Indels: 2
0.98 0.01 0.01
Matches are distributed among these distances:
52 202 0.93
53 16 0.07
ACGTcount: A:0.27, C:0.23, G:0.15, T:0.35
Consensus pattern (52 bp):
CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTATCACTTAT
Found at i:37091576 original size:58 final size:58
Alignment explanation
Indices: 37091511--37092325 Score: 1621
Period size: 58 Copynumber: 14.0 Consensus size: 58
37091501 TACACGAAAT
37091511 CACATATCACTTACCGATGCCATAGCCCAGCTATGGTCTTACACGGAATCACATATCA
1 CACATATCACTTACCGATGCCATAGCCCAGCTATGGTCTTACACGGAATCACATATCA
37091569 CACATATCACTTACCGATGCCATAGCCCAGCTATGGTCTTACACGGAATCACATATCA
1 CACATATCACTTACCGATGCCATAGCCCAGCTATGGTCTTACACGGAATCACATATCA
37091627 CACATATCACTTACCGATGCCATAGCCCAGCTATGGTCTTACACGGAATCACATATCA
1 CACATATCACTTACCGATGCCATAGCCCAGCTATGGTCTTACACGGAATCACATATCA
37091685 CACATATCACTTACCGATGCCATAGCCCAGCTATGGTCTTACACGGAATCACATATCA
1 CACATATCACTTACCGATGCCATAGCCCAGCTATGGTCTTACACGGAATCACATATCA
37091743 CACATATCACTTACCGATGCCATAGCCCAGCTATGGTCTTACACGGAATCACATATCA
1 CACATATCACTTACCGATGCCATAGCCCAGCTATGGTCTTACACGGAATCACATATCA
37091801 CACATATCACTTACCGATGCCATAGCCCAGCTATGGTCTTACACGGAATCACATATCA
1 CACATATCACTTACCGATGCCATAGCCCAGCTATGGTCTTACACGGAATCACATATCA
37091859 CACATATCACTTACCGATGCCATAGCCCAGCTATGGTCTTACACGGAATCACATATCA
1 CACATATCACTTACCGATGCCATAGCCCAGCTATGGTCTTACACGGAATCACATATCA
37091917 CACATATCACTTACCGATGCCATAGCCCAGCTATGGTCTTACACGGAATCACATATCA
1 CACATATCACTTACCGATGCCATAGCCCAGCTATGGTCTTACACGGAATCACATATCA
37091975 CACATATCACTTACCGATGCCATAGCCCAGCTATGGTCTTACACGGAATCACATATCA
1 CACATATCACTTACCGATGCCATAGCCCAGCTATGGTCTTACACGGAATCACATATCA
37092033 CACATATCACTTACCGATGCCATAGCCCAGCTATGGTCTTACACGGAATCACATATCA
1 CACATATCACTTACCGATGCCATAGCCCAGCTATGGTCTTACACGGAATCACATATCA
37092091 CACATATCACTTACCGATGCCATAGCCCAGCTATGGTCTTACACGGAATCACATATCA
1 CACATATCACTTACCGATGCCATAGCCCAGCTATGGTCTTACACGGAATCACATATCA
37092149 CACATATCACTTACCGATGCCATAGCCCAGCTATGGTCTTACACGGAATCACATATCA
1 CACATATCACTTACCGATGCCATAGCCCAGCTATGGTCTTACACGGAATCACATATCA
37092207 CACATATCACTTACCGATGCCATAGCCCAGCTATGGTCTTACACGGAATCACATATCA
1 CACATATCACTTACCGATGCCATAGCCCAGCTATGGTCTTACACGGAATCACATATCA
37092265 CACATATCACTTACCGATGCCATAGCCCAGCTATGGTCTTACACGGAATCACATAATCA
1 CACATATCACTTACCGATGCCATAGCCCAGCTATGGTCTTACACGGAATCACAT-ATCA
37092324 CA
1 CA
37092326 TGTTCACATG
Statistics
Matches: 756, Mismatches: 0, Indels: 1
1.00 0.00 0.00
Matches are distributed among these distances:
58 750 0.99
59 6 0.01
ACGTcount: A:0.31, C:0.31, G:0.14, T:0.24
Consensus pattern (58 bp):
CACATATCACTTACCGATGCCATAGCCCAGCTATGGTCTTACACGGAATCACATATCA
Found at i:37093641 original size:37 final size:37
Alignment explanation
Indices: 37093584--37093735 Score: 173
Period size: 37 Copynumber: 3.9 Consensus size: 37
37093574 TATGATCATT
*
37093584 TATCAC-TTGTC-CCTGATCAGATAAGTGTAGCCACC
1 TATCACTTTGTCTCTTGATCAGATAAGTGTAGCCACC
* *
37093619 TATCACTTTGTTTCTTGATCAGATAAGTGTAGCCACT
1 TATCACTTTGTCTCTTGATCAGATAAGTGTAGCCACC
37093656 TATCACTTTGTCTCTTGATCAGATAAGTGTAGCTAAAGCTATCAC
1 TATCACTTTGTCTCTTGATCAGATAAGTGTAGC-----C-A-C-C
*
37093701 TTATCACTTTGTCTCTTGATCAGATAAGTATAGCC
1 -TATCACTTTGTCTCTTGATCAGATAAGTGTAGCC
37093736 GAAGCTATCA
Statistics
Matches: 100, Mismatches: 6, Indels: 16
0.82 0.05 0.13
Matches are distributed among these distances:
35 6 0.06
36 4 0.04
37 54 0.54
41 1 0.01
42 1 0.01
43 1 0.01
44 1 0.01
46 32 0.32
ACGTcount: A:0.26, C:0.22, G:0.16, T:0.36
Consensus pattern (37 bp):
TATCACTTTGTCTCTTGATCAGATAAGTGTAGCCACC
Found at i:37093719 original size:46 final size:46
Alignment explanation
Indices: 37093652--37093920 Score: 340
Period size: 46 Copynumber: 5.6 Consensus size: 46
37093642 TAAGTGTAGC
* **
37093652 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGCTAAAGCTAT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
* *
37093698 CACTTATCACTTTGTCTCTTGATCAGATAAGTATAGCCGAAGCTAT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
37093744 CACTTATCACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
1 CACTTATCAC---T---TTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
*
37093796 CACTTATCACTTTGTCACTTGATCAGATAAGTATAGCCGAAGCTAT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
* ** *
37093842 TACTTATCACTTTCCACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTAC
1 CACTTATCAC--T----TTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
37093894 CACTTATCACTTTGTCACTTGATCAGA
1 CACTTATCACTTTGTCACTTGATCAGA
37093921 AGTACTCAAA
Statistics
Matches: 199, Mismatches: 12, Indels: 24
0.85 0.05 0.10
Matches are distributed among these distances:
46 112 0.56
48 1 0.01
49 2 0.01
50 1 0.01
52 83 0.42
ACGTcount: A:0.28, C:0.22, G:0.14, T:0.35
Consensus pattern (46 bp):
CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
Found at i:37093771 original size:52 final size:52
Alignment explanation
Indices: 37093695--37093914 Score: 299
Period size: 52 Copynumber: 4.3 Consensus size: 52
37093685 TAGCTAAAGC
* *
37093695 TATCACTTATCACTTTGTCTCTTGATCAGATAAGTATAGCCGAAGCTATCACT
1 TATCACTTTTCAC-TTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACT
*
37093748 TATCACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTATCACT
1 TATCACTTTTCACTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACT
*
37093800 TATCAC---T---TTGTCACTTGATCAGATAAGTATAGCCGAAGCTATTACT
1 TATCACTTTTCACTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACT
* * ** *
37093846 TATCACTTTCCACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTACCACT
1 TATCACTTTTCACTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACT
37093898 TATCACTTTGTCACTTG
1 TATCACTTT-TCACTTG
37093915 ATCAGAAGTA
Statistics
Matches: 148, Mismatches: 12, Indels: 14
0.85 0.07 0.08
Matches are distributed among these distances:
46 43 0.29
49 1 0.01
52 86 0.58
53 18 0.12
ACGTcount: A:0.28, C:0.23, G:0.14, T:0.35
Consensus pattern (52 bp):
TATCACTTTTCACTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACT
Found at i:37093817 original size:98 final size:98
Alignment explanation
Indices: 37093652--37093920 Score: 457
Period size: 98 Copynumber: 2.7 Consensus size: 98
37093642 TAAGTGTAGC
* * *
37093652 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGCTAAAGCTATCACTTATCACTTTGTCTCT
1 CACTTTTCAC-TTGTCACTTGATCAGATAAGTGTAGCTAAAGCTATCACTTATCACTTTGTCACT
37093717 TGATCAGATAAGTATAGCCGAAGCTATCACTTAT
65 TGATCAGATAAGTATAGCCGAAGCTATCACTTAT
**
37093751 CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTATCACTTATCACTTTGTCACTT
1 CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTATCACTTATCACTTTGTCACTT
*
37093816 GATCAGATAAGTATAGCCGAAGCTATTACTTAT
66 GATCAGATAAGTATAGCCGAAGCTATCACTTAT
* *
37093849 CACTTTCCACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTTGTCACTT
1 CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTATCACTTATCACTTTGTCACTT
37093914 GATCAGA
66 GATCAGA
37093921 AGTACTCAAA
Statistics
Matches: 160, Mismatches: 10, Indels: 1
0.94 0.06 0.01
Matches are distributed among these distances:
98 151 0.94
99 9 0.06
ACGTcount: A:0.28, C:0.22, G:0.14, T:0.35
Consensus pattern (98 bp):
CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTATCACTTATCACTTTGTCACTT
GATCAGATAAGTATAGCCGAAGCTATCACTTAT
Found at i:37097101 original size:49 final size:49
Alignment explanation
Indices: 37097046--37097191 Score: 229
Period size: 49 Copynumber: 3.0 Consensus size: 49
37097036 TTCGTTTTCT
* *
37097046 CGATGCCATAGTCCAACTATGGTCTTACACGTAATCACAAATCACATAC
1 CGATGCCATAGCCCAACTATGGTCTTACACGAAATCACAAATCACATAC
* *
37097095 CGATGCCATAGCCCAACTATGGTCTTACACGAAATCACATATCACTTAC
1 CGATGCCATAGCCCAACTATGGTCTTACACGAAATCACAAATCACATAC
* *
37097144 CGATGCCATAGCCCAGCTATGGTCTTACACGGAATCACATAATCACAT
1 CGATGCCATAGCCCAACTATGGTCTTACACGAAATCACA-AATCACAT
37097192 GTTCACATGT
Statistics
Matches: 88, Mismatches: 8, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
49 82 0.93
50 6 0.07
ACGTcount: A:0.33, C:0.29, G:0.14, T:0.24
Consensus pattern (49 bp):
CGATGCCATAGCCCAACTATGGTCTTACACGAAATCACAAATCACATAC
Found at i:37103551 original size:30 final size:30
Alignment explanation
Indices: 37103493--37103553 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
37103483 ATTTCCGAGC
**
37103493 TTGGGGACAAAAGTGTAATTATGTAAAAGT
1 TTGGGGACAAAAGTGTAATTATCAAAAAGT
* * *
37103523 TTGGGGGCAAAATTGTAATTTTCAAAAAGT
1 TTGGGGACAAAAGTGTAATTATCAAAAAGT
37103553 T
1 T
37103554 GGGTGGTGGA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.38, C:0.05, G:0.25, T:0.33
Consensus pattern (30 bp):
TTGGGGACAAAAGTGTAATTATCAAAAAGT
Found at i:37109407 original size:103 final size:103
Alignment explanation
Indices: 37109173--37110159 Score: 1857
Period size: 103 Copynumber: 9.6 Consensus size: 103
37109163 GTTGTACATA
** * *
37109173 AAGGGGTTGCTGTGTGCTGATTCCCCGATTCATTGGTGGTGCTATGTGCGATATCCACCGTATCT
1 AAGGGGTTGCTAAGTGCTGATTCCCCGGTTCATTGGTGGTGCTAAGTGCGATATCCACCGTATCT
* **
37109238 TTGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCC
66 CTGAAAT-AAAAAGGGGGTTGCTATGTGCTGATTCCCCC
*
37109277 GAGGGGTTGCTAAGTGCTGATTCCCCGGTTCATTGGTGGTGCTAAGTGCGATATCCACCGTATCT
1 AAGGGGTTGCTAAGTGCTGATTCCCCGGTTCATTGGTGGTGCTAAGTGCGATATCCACCGTATCT
37109342 CTGAAATAAAAAGGGGGTTGCTATGTGCTGATTCCCCC
66 CTGAAATAAAAAGGGGGTTGCTATGTGCTGATTCCCCC
37109380 AAGGGGTTGCTAAGTGCTGATTCCCCGGTTCATTGGTGGTGCTAAGTGCGATATCCACCGTATCT
1 AAGGGGTTGCTAAGTGCTGATTCCCCGGTTCATTGGTGGTGCTAAGTGCGATATCCACCGTATCT
37109445 CTGAAATAAAAAGGGGGTTGCTATGTGCTGATTCCCCC
66 CTGAAATAAAAAGGGGGTTGCTATGTGCTGATTCCCCC
37109483 AAGGGGTTGCTAAGTGCTGATTCCCCGGTTCATTGGTGGTGCTAAGTGCGATATCCACCGTATCT
1 AAGGGGTTGCTAAGTGCTGATTCCCCGGTTCATTGGTGGTGCTAAGTGCGATATCCACCGTATCT
37109548 CTGAAATAAAAAGGGGGTTGCTATGTGCTGATTCCCCC
66 CTGAAATAAAAAGGGGGTTGCTATGTGCTGATTCCCCC
37109586 AAGGGGTTGCTAAGTGCTGATTCCCCGGTTCATTGGTGGTGCTAAGTGCGATATCCACCGTATCT
1 AAGGGGTTGCTAAGTGCTGATTCCCCGGTTCATTGGTGGTGCTAAGTGCGATATCCACCGTATCT
37109651 CTGAAATAAAAAGGGGGTTGCTATGTGCTGATTCCCCC
66 CTGAAATAAAAAGGGGGTTGCTATGTGCTGATTCCCCC
37109689 AAGGGGTTGCTAAGTGCTGATTCCCCGGTTCATTGGTGGTGCTAAGTGCGATATCCACCGTATCT
1 AAGGGGTTGCTAAGTGCTGATTCCCCGGTTCATTGGTGGTGCTAAGTGCGATATCCACCGTATCT
37109754 CTGAAATAAAAAGGGGGTTGCTATGTGCTGATTCCCCC
66 CTGAAATAAAAAGGGGGTTGCTATGTGCTGATTCCCCC
37109792 AAGGGGTTGCTAAGTGCTGATTCCCCGGTTCATTGGTGGTGCTAAGTGCGATATCCACCGTATCT
1 AAGGGGTTGCTAAGTGCTGATTCCCCGGTTCATTGGTGGTGCTAAGTGCGATATCCACCGTATCT
37109857 CTGAAATAAAAAGGGGGTTGCTATGTGCTGATTCCCCC
66 CTGAAATAAAAAGGGGGTTGCTATGTGCTGATTCCCCC
37109895 AAGGGGTTGCTAAGTGCTGATTCCCCGGTTCATTGGTGGTGCTAAGTGCGATATCCACCGTATCT
1 AAGGGGTTGCTAAGTGCTGATTCCCCGGTTCATTGGTGGTGCTAAGTGCGATATCCACCGTATCT
37109960 CTGAAATAAAAAGGGGGTTGCTATGTGCTGATTCCCCC
66 CTGAAATAAAAAGGGGGTTGCTATGTGCTGATTCCCCC
37109998 AAGGGGTTGCTAAGTGCTGATTCCCCGGTTCATTGGTGGTGCTAAGTGCGATATCCACCGTATCT
1 AAGGGGTTGCTAAGTGCTGATTCCCCGGTTCATTGGTGGTGCTAAGTGCGATATCCACCGTATCT
37110063 CTGAAATAAAAAGGGGGTTGCTATGTGCTGATTCCCCC
66 CTGAAATAAAAAGGGGGTTGCTATGTGCTGATTCCCCC
* * * *
37110101 AAGGGGTTGCTAAGTGCTGATTCCCCGATTAAGTGGTGGTGCTAAGTGCGAGATCCACC
1 AAGGGGTTGCTAAGTGCTGATTCCCCGGTTCATTGGTGGTGCTAAGTGCGATATCCACC
37110160 AATAACGGTT
Statistics
Matches: 870, Mismatches: 13, Indels: 1
0.98 0.01 0.00
Matches are distributed among these distances:
103 804 0.92
104 66 0.08
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.29
Consensus pattern (103 bp):
AAGGGGTTGCTAAGTGCTGATTCCCCGGTTCATTGGTGGTGCTAAGTGCGATATCCACCGTATCT
CTGAAATAAAAAGGGGGTTGCTATGTGCTGATTCCCCC
Found at i:37112986 original size:45 final size:45
Alignment explanation
Indices: 37112919--37113042 Score: 189
Period size: 46 Copynumber: 2.8 Consensus size: 45
37112909 CATATGACCT
* *
37112919 CTTATCAC-TTGTCCTTGATCAGATAAGTGTAGCT-AGGCTACCA
1 CTTATCACTTTGTACTTGATCAGATAAGTGTAGCTGAAGCTACCA
37112962 CTTATCACTTTGCTACTTGATCAGATAAGTGTAGCTGAAGCTACCA
1 CTTATCACTTTG-TACTTGATCAGATAAGTGTAGCTGAAGCTACCA
*
37113008 CTTATCACTTTATCACTTGATCAGATAAGTGTAGC
1 CTTATCACTTTGT-ACTTGATCAGATAAGTGTAGC
37113043 CACTTATCAC
Statistics
Matches: 74, Mismatches: 3, Indels: 5
0.90 0.04 0.06
Matches are distributed among these distances:
43 8 0.11
44 3 0.04
45 23 0.31
46 40 0.54
ACGTcount: A:0.27, C:0.22, G:0.17, T:0.34
Consensus pattern (45 bp):
CTTATCACTTTGTACTTGATCAGATAAGTGTAGCTGAAGCTACCA
Found at i:37113046 original size:37 final size:37
Alignment explanation
Indices: 37113005--37113225 Score: 149
Period size: 37 Copynumber: 5.8 Consensus size: 37
37112995 GCTGAAGCTA
*
37113005 CCACTTATCACTTTATCACTTGATCAGATAAGTGTAG
1 CCACTTATCACTTTGTCACTTGATCAGATAAGTGTAG
37113042 CCACTTATCACTTTGTC-CTTTGA-C--AT-A-TG-A-
1 CCACTTATCACTTTGTCAC-TTGATCAGATAAGTGTAG
*
37113072 CCTCTTATCAC-TTGTC-CTTGATCAGATAAGTGTAGCTAGG
1 CCACTTATCACTTTGTCACTTGATCAGATAA--GT-G-TA-G
37113112 CTACCACTTATCACTTTG-CTACTTGATCAGATAAGTGTAGCTGAAG
1 ---CCACTTATCACTTTGTC-ACTTGATCAGATAA--GT-G-T--AG
*
37113158 CTACCACTTATCACTTTATCACTTGATCAGATAAGTGTAG
1 ---CCACTTATCACTTTGTCACTTGATCAGATAAGTGTAG
**
37113198 CCACTTATCACTTTGTTTCTTGATCAGA
1 CCACTTATCACTTTGTCACTTGATCAGA
37113226 AGTACTCAAA
Statistics
Matches: 155, Mismatches: 7, Indels: 44
0.75 0.03 0.21
Matches are distributed among these distances:
28 4 0.03
29 7 0.05
30 10 0.06
31 3 0.02
32 3 0.02
33 1 0.01
34 2 0.01
35 1 0.01
36 3 0.02
37 45 0.29
38 1 0.01
40 2 0.01
42 1 0.01
43 12 0.08
44 5 0.03
45 21 0.14
46 32 0.21
47 2 0.01
ACGTcount: A:0.26, C:0.23, G:0.14, T:0.36
Consensus pattern (37 bp):
CCACTTATCACTTTGTCACTTGATCAGATAAGTGTAG
Found at i:37113056 original size:83 final size:83
Alignment explanation
Indices: 37112959--37113225 Score: 276
Period size: 83 Copynumber: 3.3 Consensus size: 83
37112949 AGCTAGGCTA
37112959 CCACTTATCACTTTGCTACTTGATCAGATAAGTGTAGCTGAAGCTACCACTTATCACTTTATCAC
1 CCACTTATCACTTTGCTACTTGATCAGATAAGTGTAGCTGAAGCTACCACTTATCACTTTATCAC
37113024 TTGATCAGATAAGTGTAG
66 TTGATCAGATAAGTGTAG
* * * * *
37113042 CCACTTATCACTTTG-TCCTTTGA-C--AT-A-TG-ACCT----CTTATCACTTGTC-CTTGATC
1 CCACTTATCACTTTGCTAC-TTGATCAGATAAGTGTAGCTGAAGC-TACCACTTATCACTTTATC
** * * *
37113095 AGATAAGTGTAGCT-AG-GCTA-
64 ACTTGA-T-CAGATAAGTG-TAG
37113115 CCACTTATCACTTTGCTACTTGATCAGATAAGTGTAGCTGAAGCTACCACTTATCACTTTATCAC
1 CCACTTATCACTTTGCTACTTGATCAGATAAGTGTAGCTGAAGCTACCACTTATCACTTTATCAC
37113180 TTGATCAGATAAGTGTAG
66 TTGATCAGATAAGTGTAG
* *
37113198 CCACTTATCACTTTGTTTCTTGATCAGA
1 CCACTTATCACTTTGCTACTTGATCAGA
37113226 AGTACTCAAA
Statistics
Matches: 142, Mismatches: 22, Indels: 40
0.70 0.11 0.20
Matches are distributed among these distances:
73 30 0.21
74 17 0.12
75 3 0.02
76 2 0.01
77 4 0.03
78 4 0.03
79 4 0.03
80 2 0.01
81 3 0.02
82 17 0.12
83 56 0.39
ACGTcount: A:0.27, C:0.23, G:0.15, T:0.36
Consensus pattern (83 bp):
CCACTTATCACTTTGCTACTTGATCAGATAAGTGTAGCTGAAGCTACCACTTATCACTTTATCAC
TTGATCAGATAAGTGTAG
Found at i:37113142 original size:45 final size:45
Alignment explanation
Indices: 37113075--37113198 Score: 189
Period size: 46 Copynumber: 2.8 Consensus size: 45
37113065 CATATGACCT
* *
37113075 CTTATCAC-TTGTCCTTGATCAGATAAGTGTAGCT-AGGCTACCA
1 CTTATCACTTTGTACTTGATCAGATAAGTGTAGCTGAAGCTACCA
37113118 CTTATCACTTTGCTACTTGATCAGATAAGTGTAGCTGAAGCTACCA
1 CTTATCACTTTG-TACTTGATCAGATAAGTGTAGCTGAAGCTACCA
*
37113164 CTTATCACTTTATCACTTGATCAGATAAGTGTAGC
1 CTTATCACTTTGT-ACTTGATCAGATAAGTGTAGC
37113199 CACTTATCAC
Statistics
Matches: 74, Mismatches: 3, Indels: 5
0.90 0.04 0.06
Matches are distributed among these distances:
43 8 0.11
44 3 0.04
45 23 0.31
46 40 0.54
ACGTcount: A:0.27, C:0.22, G:0.17, T:0.34
Consensus pattern (45 bp):
CTTATCACTTTGTACTTGATCAGATAAGTGTAGCTGAAGCTACCA
Found at i:37113187 original size:156 final size:156
Alignment explanation
Indices: 37112903--37113213 Score: 622
Period size: 156 Copynumber: 2.0 Consensus size: 156
37112893 TTCACTTTCA
37112903 CTTTGACATATGACCTCTTATCACTTGTCCTTGATCAGATAAGTGTAGCTAGGCTACCACTTATC
1 CTTTGACATATGACCTCTTATCACTTGTCCTTGATCAGATAAGTGTAGCTAGGCTACCACTTATC
37112968 ACTTTGCTACTTGATCAGATAAGTGTAGCTGAAGCTACCACTTATCACTTTATCACTTGATCAGA
66 ACTTTGCTACTTGATCAGATAAGTGTAGCTGAAGCTACCACTTATCACTTTATCACTTGATCAGA
37113033 TAAGTGTAGCCACTTATCACTTTGTC
131 TAAGTGTAGCCACTTATCACTTTGTC
37113059 CTTTGACATATGACCTCTTATCACTTGTCCTTGATCAGATAAGTGTAGCTAGGCTACCACTTATC
1 CTTTGACATATGACCTCTTATCACTTGTCCTTGATCAGATAAGTGTAGCTAGGCTACCACTTATC
37113124 ACTTTGCTACTTGATCAGATAAGTGTAGCTGAAGCTACCACTTATCACTTTATCACTTGATCAGA
66 ACTTTGCTACTTGATCAGATAAGTGTAGCTGAAGCTACCACTTATCACTTTATCACTTGATCAGA
37113189 TAAGTGTAGCCACTTATCACTTTGT
131 TAAGTGTAGCCACTTATCACTTTGT
37113214 TTCTTGATCA
Statistics
Matches: 155, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
156 155 1.00
ACGTcount: A:0.26, C:0.23, G:0.15, T:0.35
Consensus pattern (156 bp):
CTTTGACATATGACCTCTTATCACTTGTCCTTGATCAGATAAGTGTAGCTAGGCTACCACTTATC
ACTTTGCTACTTGATCAGATAAGTGTAGCTGAAGCTACCACTTATCACTTTATCACTTGATCAGA
TAAGTGTAGCCACTTATCACTTTGTC
Found at i:37115511 original size:37 final size:37
Alignment explanation
Indices: 37115447--37115603 Score: 181
Period size: 37 Copynumber: 4.0 Consensus size: 37
37115437 TACGTATGAT
* *
37115447 CACTTATCAC-TTATCCCTTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGC
*
37115483 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGC
37115520 CACTTATCACTTTGTCTCTTGATCAGATAAGTATAGCTAAAGC
1 CACTTATCACTTTGTCTCTTGATCAGATAAG--T-G-T--AGC
* *
37115563 TATCACTTATCACTTTGTCACTTGATCAGATAAGTATAGC
1 ---CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGC
37115603 C
1 C
37115604 GAAGCTATAA
Statistics
Matches: 105, Mismatches: 6, Indels: 19
0.81 0.05 0.15
Matches are distributed among these distances:
36 10 0.10
37 54 0.51
39 1 0.01
40 4 0.04
41 1 0.01
42 1 0.01
43 3 0.03
44 1 0.01
46 30 0.29
ACGTcount: A:0.28, C:0.22, G:0.14, T:0.36
Consensus pattern (37 bp):
CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGC
Found at i:37115573 original size:46 final size:46
Alignment explanation
Indices: 37115520--37115984 Score: 579
Period size: 46 Copynumber: 9.6 Consensus size: 46
37115510 TAAGTGTAGC
* **
37115520 CACTTATCACTTTGTCTCTTGATCAGATAAGTATAGCTAAAGCTAT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTATAGCCGAAGCTAT
37115566 CACTTATCACTTTGTCACTTGATCAGATAAGTATAGCCGAAGCTAT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTATAGCCGAAGCTAT
* * *
37115612 AACTTATCACTTTCCACTTGTCACTTGATCAGATAAGTGTAGCTGAAGCTAT
1 CACTTATCAC--T----TTGTCACTTGATCAGATAAGTATAGCCGAAGCTAT
37115664 CACTTATCACTTTGTCACTTGATCAGATAAGTATAGCCGAAGCTAT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTATAGCCGAAGCTAT
* *
37115710 AACTTATCACTTTCCACTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
1 CACTTATCAC--T----TTGTCACTTGATCAGATAAGTATAGCCGAAGCTAT
* *
37115762 CACTTATCACTTTCCACTTGTCACTTGATCAGATAAGTGTAGCTGAAGCTAT
1 CACTTATCAC--T----TTGTCACTTGATCAGATAAGTATAGCCGAAGCTAT
37115814 CACTTATCACTTTGTCACTTGATCAGATAAGTATAGCCGAAGCTAT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTATAGCCGAAGCTAT
* * *
37115860 AACTTATCACTTTCCACTTGTCACTTGATCAGATAAGTGTAGCTGAAGCTAT
1 CACTTATCAC--T----TTGTCACTTGATCAGATAAGTATAGCCGAAGCTAT
37115912 CACTTATCACTTTGTCACTTGATCAGATAAGTATAGCCGAAGCTAT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTATAGCCGAAGCTAT
* *
37115958 AACTTATCACTTTATCACTTGATCAGA
1 CACTTATCACTTTGTCACTTGATCAGA
37115985 AGTACTCAAA
Statistics
Matches: 378, Mismatches: 23, Indels: 36
0.86 0.05 0.08
Matches are distributed among these distances:
46 194 0.51
48 3 0.01
50 3 0.01
52 178 0.47
ACGTcount: A:0.30, C:0.22, G:0.15, T:0.34
Consensus pattern (46 bp):
CACTTATCACTTTGTCACTTGATCAGATAAGTATAGCCGAAGCTAT
Found at i:37115636 original size:52 final size:51
Alignment explanation
Indices: 37115563--37115970 Score: 558
Period size: 52 Copynumber: 8.2 Consensus size: 51
37115553 TAGCTAAAGC
37115563 TATCACTTATCACTTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATAACT
1 TATCACTT-TCAC-TTGTCACTTGATCAGATAAGTATAGCCGAAGCTATAACT
* * *
37115616 TATCACTTTCCACTTGTCACTTGATCAGATAAGTGTAGCTGAAGCTATCACT
1 TATCACTTT-CACTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATAACT
37115668 TATCAC--T---TTGTCACTTGATCAGATAAGTATAGCCGAAGCTATAACT
1 TATCACTTTCACTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATAACT
* *
37115714 TATCACTTTCCACTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTATCACT
1 TATCACTTT-CACTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATAACT
* * *
37115766 TATCACTTTCCACTTGTCACTTGATCAGATAAGTGTAGCTGAAGCTATCACT
1 TATCACTTT-CACTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATAACT
37115818 TATCAC--T---TTGTCACTTGATCAGATAAGTATAGCCGAAGCTATAACT
1 TATCACTTTCACTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATAACT
* * *
37115864 TATCACTTTCCACTTGTCACTTGATCAGATAAGTGTAGCTGAAGCTATCACT
1 TATCACTTT-CACTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATAACT
37115916 TATCAC--T---TTGTCACTTGATCAGATAAGTATAGCCGAAGCTATAACT
1 TATCACTTTCACTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATAACT
37115962 TATCACTTT
1 TATCACTTT
37115971 ATCACTTGAT
Statistics
Matches: 322, Mismatches: 18, Indels: 35
0.86 0.05 0.09
Matches are distributed among these distances:
46 126 0.39
48 3 0.01
50 3 0.01
52 179 0.56
53 11 0.03
ACGTcount: A:0.29, C:0.22, G:0.15, T:0.34
Consensus pattern (51 bp):
TATCACTTTCACTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATAACT
Found at i:37115639 original size:98 final size:92
Alignment explanation
Indices: 37115629--37115984 Score: 442
Period size: 98 Copynumber: 3.7 Consensus size: 92
37115619 CACTTTCCAC
* *
37115629 TTGTCACTTGATCAGATAAGTGTAGCTGAAGCTATCACTTATCACTTTGTCACTTGATCAGATAA
1 TTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACTTATCACTTTGTCACTTGATCAGATAA
37115694 GTATAGCCGAAGCTATAACTTATCACTTT
66 GTATAGCCGAAGCTATAACTTATCAC--T
*
37115723 CCACTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTATCACTTATCACTTTCCACTTGTCACTT
1 ----TTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACTTATCAC--T----TTGTCACTT
* * *
37115788 GATCAGATAAGTGTAGCTGAAGCTATCACTTATCACT
56 GATCAGATAAGTATAGCCGAAGCTATAACTTATCACT
*
37115825 TTGTCACTTGATCAGATAAGTATAGCCGAAGCTATAACTTATCACTTTCCACTTGTCACTTGATC
1 TTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACTTATCAC--T----TTGTCACTTGATC
* * *
37115890 AGATAAGTGTAGCTGAAGCTATCACTTATCACT
60 AGATAAGTATAGCCGAAGCTATAACTTATCACT
* *
37115923 TTGTCACTTGATCAGATAAGTATAGCCGAAGCTATAACTTATCACTTTATCACTTGATCAGA
1 TTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACTTATCACTTTGTCACTTGATCAGA
37115985 AGTACTCAAA
Statistics
Matches: 245, Mismatches: 7, Indels: 18
0.91 0.03 0.07
Matches are distributed among these distances:
92 15 0.06
96 1 0.00
98 185 0.76
100 1 0.00
102 1 0.00
104 42 0.17
ACGTcount: A:0.29, C:0.21, G:0.15, T:0.34
Consensus pattern (92 bp):
TTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACTTATCACTTTGTCACTTGATCAGATAA
GTATAGCCGAAGCTATAACTTATCACT
Found at i:37115773 original size:150 final size:150
Alignment explanation
Indices: 37115520--37115984 Score: 747
Period size: 150 Copynumber: 3.2 Consensus size: 150
37115510 TAAGTGTAGC
* ** *
37115520 CACTTATCACTTTGTCTCTTGATCAGATAAGTATAGCTAAAGCTATCACTTATCAC--T----TT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATAACTTATCACTTTCCACTT
* *
37115579 GTCACTTGATCAGATAAGTATAGCCGAAGCTATAACTTATCACTTTCCACTTGTCACTTGATCAG
66 GTCACTTGATCAGATAAGTGTAGCCGAAGCTATCACTTATCACTTTCCACTTGTCACTTGATCAG
37115644 ATAAGTGTAGCTGAAGCTAT
131 ATAAGTGTAGCTGAAGCTAT
37115664 CACTTATCACTTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATAACTTATCACTTTCCACTT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATAACTTATCACTTTCCACTT
37115729 GTCACTTGATCAGATAAGTGTAGCCGAAGCTATCACTTATCACTTTCCACTTGTCACTTGATCAG
66 GTCACTTGATCAGATAAGTGTAGCCGAAGCTATCACTTATCACTTTCCACTTGTCACTTGATCAG
37115794 ATAAGTGTAGCTGAAGCTAT
131 ATAAGTGTAGCTGAAGCTAT
37115814 CACTTATCACTTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATAACTTATCACTTTCCACTT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATAACTTATCACTTTCCACTT
*
37115879 GTCACTTGATCAGATAAGTGTAGCTGAAGCTATCACTTATCAC--T----TTGTCACTTGATCAG
66 GTCACTTGATCAGATAAGTGTAGCCGAAGCTATCACTTATCACTTTCCACTTGTCACTTGATCAG
* *
37115938 ATAAGTATAGCCGAAGCTAT
131 ATAAGTGTAGCTGAAGCTAT
* *
37115958 AACTTATCACTTTATCACTTGATCAGA
1 CACTTATCACTTTGTCACTTGATCAGA
37115985 AGTACTCAAA
Statistics
Matches: 304, Mismatches: 11, Indels: 12
0.93 0.03 0.04
Matches are distributed among these distances:
144 110 0.36
146 1 0.00
148 1 0.00
150 192 0.63
ACGTcount: A:0.30, C:0.22, G:0.15, T:0.34
Consensus pattern (150 bp):
CACTTATCACTTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATAACTTATCACTTTCCACTT
GTCACTTGATCAGATAAGTGTAGCCGAAGCTATCACTTATCACTTTCCACTTGTCACTTGATCAG
ATAAGTGTAGCTGAAGCTAT
Found at i:37119165 original size:49 final size:50
Alignment explanation
Indices: 37119110--37119313 Score: 241
Period size: 49 Copynumber: 4.0 Consensus size: 50
37119100 TTCGTTTTCT
*
37119110 CGATGCCATAGTCCAACTATGGTCTTACACGTAATCACA-AATCACATAC
1 CGATGCCATAGCCCAACTATGGTCTTACACGTAATCACACAATCACATAC
* * *
37119159 CGATGCCATAGCCCAACTATGGTCTTACACGAAATCACA-TATCACTTAC
1 CGATGCCATAGCCCAACTATGGTCTTACACGTAATCACACAATCACATAC
* *
37119208 CGATGCCATAGCCCAGCTATGGTCTTACACGGAATCACATATCACACATATCACTTAC
1 CGATGCCATAGCCCAACTATGGTCTTACAC-G--T---A-ATCACACA-ATCACATAC
* * *
37119266 CGATGCCATAGCCCAGCTATGGTCTTACACGGAATCACATAATCACAT
1 CGATGCCATAGCCCAACTATGGTCTTACACGTAATCACACAATCACAT
37119314 GTTCACATGT
Statistics
Matches: 136, Mismatches: 10, Indels: 17
0.83 0.06 0.10
Matches are distributed among these distances:
49 74 0.54
50 7 0.05
51 7 0.05
52 1 0.01
55 1 0.01
56 6 0.04
57 1 0.01
58 39 0.29
ACGTcount: A:0.32, C:0.30, G:0.14, T:0.24
Consensus pattern (50 bp):
CGATGCCATAGCCCAACTATGGTCTTACACGTAATCACACAATCACATAC
Found at i:37119280 original size:58 final size:59
Alignment explanation
Indices: 37119194--37119312 Score: 231
Period size: 58 Copynumber: 2.0 Consensus size: 59
37119184 TACACGAAAT
37119194 CACATATCACTTACCGATGCCATAGCCCAGCTATGGTCTTACACGGAATCACAT-ATCA
1 CACATATCACTTACCGATGCCATAGCCCAGCTATGGTCTTACACGGAATCACATAATCA
37119252 CACATATCACTTACCGATGCCATAGCCCAGCTATGGTCTTACACGGAATCACATAATCA
1 CACATATCACTTACCGATGCCATAGCCCAGCTATGGTCTTACACGGAATCACATAATCA
37119311 CA
1 CA
37119313 TGTTCACATG
Statistics
Matches: 60, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
58 54 0.90
59 6 0.10
ACGTcount: A:0.32, C:0.31, G:0.13, T:0.24
Consensus pattern (59 bp):
CACATATCACTTACCGATGCCATAGCCCAGCTATGGTCTTACACGGAATCACATAATCA
Found at i:37119293 original size:28 final size:28
Alignment explanation
Indices: 37119203--37119293 Score: 80
Period size: 28 Copynumber: 3.2 Consensus size: 28
37119193 TCACATATCA
37119203 CTTACCGATGCCATAGCCCAGCTATGGT
1 CTTACCGATGCCATAGCCCAGCTATGGT
* * **
37119231 CTTACACGGAAT-CACATATCACA-CATAT-CA
1 CTTAC-C-G-ATGC-CATAGCCCAGC-TATGGT
37119261 CTTACCGATGCCATAGCCCAGCTATGGT
1 CTTACCGATGCCATAGCCCAGCTATGGT
37119289 CTTAC
1 CTTAC
37119294 ACGGAATCAC
Statistics
Matches: 47, Mismatches: 8, Indels: 16
0.66 0.11 0.23
Matches are distributed among these distances:
27 12 0.26
28 13 0.28
29 2 0.04
30 8 0.17
31 12 0.26
ACGTcount: A:0.27, C:0.32, G:0.15, T:0.25
Consensus pattern (28 bp):
CTTACCGATGCCATAGCCCAGCTATGGT
Found at i:37120626 original size:37 final size:37
Alignment explanation
Indices: 37120565--37120710 Score: 242
Period size: 37 Copynumber: 4.0 Consensus size: 37
37120555 TACGTATGAT
* *
37120565 CACTTATCAC-TTG-TCCCTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
*
37120600 CACCTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
37120637 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
*
37120674 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
37120711 TAAAGCTATC
Statistics
Matches: 104, Mismatches: 5, Indels: 2
0.94 0.05 0.02
Matches are distributed among these distances:
35 9 0.09
36 3 0.03
37 92 0.88
ACGTcount: A:0.25, C:0.22, G:0.16, T:0.37
Consensus pattern (37 bp):
CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
Found at i:37120727 original size:46 final size:46
Alignment explanation
Indices: 37120674--37120942 Score: 340
Period size: 46 Copynumber: 5.6 Consensus size: 46
37120664 TAAGTGTAGC
* **
37120674 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGCTAAAGCTAT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
* *
37120720 CACTTATCACTTTGTCTCTTGATCAGATAAGTATAGCCGAAGCTAT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
37120766 CACTTATCACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
1 CACTTATCAC---T---TTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
*
37120818 CACTTATCACTTTGTCACTTGATCAGATAAGTATAGCCGAAGCTAT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
* ** *
37120864 TACTTATCACTTTCCACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTAC
1 CACTTATCAC--T----TTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
37120916 CACTTATCACTTTGTCACTTGATCAGA
1 CACTTATCACTTTGTCACTTGATCAGA
37120943 AGTACTCAAA
Statistics
Matches: 199, Mismatches: 12, Indels: 24
0.85 0.05 0.10
Matches are distributed among these distances:
46 112 0.56
48 1 0.01
49 2 0.01
50 1 0.01
52 83 0.42
ACGTcount: A:0.28, C:0.22, G:0.14, T:0.35
Consensus pattern (46 bp):
CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
Found at i:37120793 original size:52 final size:52
Alignment explanation
Indices: 37120717--37120936 Score: 299
Period size: 52 Copynumber: 4.3 Consensus size: 52
37120707 TAGCTAAAGC
* *
37120717 TATCACTTATCACTTTGTCTCTTGATCAGATAAGTATAGCCGAAGCTATCACT
1 TATCACTTTTCAC-TTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACT
*
37120770 TATCACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTATCACT
1 TATCACTTTTCACTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACT
*
37120822 TATCAC---T---TTGTCACTTGATCAGATAAGTATAGCCGAAGCTATTACT
1 TATCACTTTTCACTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACT
* * ** *
37120868 TATCACTTTCCACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTACCACT
1 TATCACTTTTCACTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACT
37120920 TATCACTTTGTCACTTG
1 TATCACTTT-TCACTTG
37120937 ATCAGAAGTA
Statistics
Matches: 148, Mismatches: 12, Indels: 14
0.85 0.07 0.08
Matches are distributed among these distances:
46 43 0.29
49 1 0.01
52 86 0.58
53 18 0.12
ACGTcount: A:0.28, C:0.23, G:0.14, T:0.35
Consensus pattern (52 bp):
TATCACTTTTCACTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACT
Found at i:37120839 original size:98 final size:98
Alignment explanation
Indices: 37120674--37120942 Score: 457
Period size: 98 Copynumber: 2.7 Consensus size: 98
37120664 TAAGTGTAGC
* * *
37120674 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGCTAAAGCTATCACTTATCACTTTGTCTCT
1 CACTTTTCAC-TTGTCACTTGATCAGATAAGTGTAGCTAAAGCTATCACTTATCACTTTGTCACT
37120739 TGATCAGATAAGTATAGCCGAAGCTATCACTTAT
65 TGATCAGATAAGTATAGCCGAAGCTATCACTTAT
**
37120773 CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTATCACTTATCACTTTGTCACTT
1 CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTATCACTTATCACTTTGTCACTT
*
37120838 GATCAGATAAGTATAGCCGAAGCTATTACTTAT
66 GATCAGATAAGTATAGCCGAAGCTATCACTTAT
* *
37120871 CACTTTCCACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTTGTCACTT
1 CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTATCACTTATCACTTTGTCACTT
37120936 GATCAGA
66 GATCAGA
37120943 AGTACTCAAA
Statistics
Matches: 160, Mismatches: 10, Indels: 1
0.94 0.06 0.01
Matches are distributed among these distances:
98 151 0.94
99 9 0.06
ACGTcount: A:0.28, C:0.22, G:0.14, T:0.35
Consensus pattern (98 bp):
CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTATCACTTATCACTTTGTCACTT
GATCAGATAAGTATAGCCGAAGCTATCACTTAT
Found at i:37128297 original size:23 final size:23
Alignment explanation
Indices: 37128268--37128365 Score: 162
Period size: 23 Copynumber: 4.3 Consensus size: 23
37128258 ATAAGTGCCA
37128268 CACTGATATGTAGCCGAAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
37128291 CACTGATATGTAGCCGAAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
* *
37128314 CACTG-GATGTAGCCAAAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
*
37128336 CACTGAAATGTAGCCGAAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
37128359 CACTGAT
1 CACTGAT
37128366 CAATAACACT
Statistics
Matches: 69, Mismatches: 5, Indels: 2
0.91 0.07 0.03
Matches are distributed among these distances:
22 20 0.29
23 49 0.71
ACGTcount: A:0.32, C:0.27, G:0.21, T:0.20
Consensus pattern (23 bp):
CACTGATATGTAGCCGAAGCTAC
Found at i:37128333 original size:45 final size:45
Alignment explanation
Indices: 37128275--37128363 Score: 160
Period size: 45 Copynumber: 2.0 Consensus size: 45
37128265 CCACACTGAT
* *
37128275 ATGTAGCCGAAGCTACCACTGATATGTAGCCGAAGCTACCACTGG
1 ATGTAGCCAAAGCTACCACTGAAATGTAGCCGAAGCTACCACTGG
37128320 ATGTAGCCAAAGCTACCACTGAAATGTAGCCGAAGCTACCACTG
1 ATGTAGCCAAAGCTACCACTGAAATGTAGCCGAAGCTACCACTG
37128364 ATCAATAACA
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
45 42 1.00
ACGTcount: A:0.31, C:0.27, G:0.22, T:0.19
Consensus pattern (45 bp):
ATGTAGCCAAAGCTACCACTGAAATGTAGCCGAAGCTACCACTGG
Found at i:37145549 original size:16 final size:16
Alignment explanation
Indices: 37145528--37145559 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
37145518 TGGGTCAAGT
37145528 TGATTTTGGATCGATC
1 TGATTTTGGATCGATC
37145544 TGATTTTGGATCGATC
1 TGATTTTGGATCGATC
37145560 AATCTGGCTC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.19, C:0.12, G:0.25, T:0.44
Consensus pattern (16 bp):
TGATTTTGGATCGATC
Found at i:37147088 original size:30 final size:30
Alignment explanation
Indices: 37147026--37147086 Score: 90
Period size: 30 Copynumber: 2.1 Consensus size: 30
37147016 TATAGTCAAC
* *
37147026 AAATAATTTAAAATTTATAAAAGTATTAAA
1 AAATAAATTAAAATTTATAAAAGCATTAAA
37147056 AAATAAATTAAAATTT-TAAAA-CATTAAA
1 AAATAAATTAAAATTTATAAAAGCATTAAA
37147084 AAA
1 AAA
37147087 AAGCATGAAT
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
28 9 0.31
29 5 0.17
30 15 0.52
ACGTcount: A:0.64, C:0.02, G:0.02, T:0.33
Consensus pattern (30 bp):
AAATAAATTAAAATTTATAAAAGCATTAAA
Found at i:37157666 original size:2 final size:2
Alignment explanation
Indices: 37157659--37157683 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
37157649 TCAAAATCTG
37157659 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
37157684 AATGATATCT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:37159378 original size:6 final size:7
Alignment explanation
Indices: 37159362--37159394 Score: 57
Period size: 7 Copynumber: 4.6 Consensus size: 7
37159352 CGCTTGTATC
37159362 AAAATTA
1 AAAATTA
37159369 AAAATTA
1 AAAATTA
37159376 AAAATTA
1 AAAATTA
37159383 AAAATTCA
1 AAAATT-A
37159391 AAAA
1 AAAA
37159395 ATGTATAGAC
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
7 20 0.80
8 5 0.20
ACGTcount: A:0.73, C:0.03, G:0.00, T:0.24
Consensus pattern (7 bp):
AAAATTA
Found at i:37165003 original size:13 final size:14
Alignment explanation
Indices: 37164987--37165022 Score: 51
Period size: 13 Copynumber: 2.8 Consensus size: 14
37164977 CAATCTCATA
37164987 TCTCAATTTCAA-T
1 TCTCAATTTCAATT
37165000 TCTCAA-TTCAATT
1 TCTCAATTTCAATT
37165013 TCTC-ATTTCA
1 TCTCAATTTCA
37165023 TTCCAATAGC
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
12 6 0.29
13 15 0.71
ACGTcount: A:0.28, C:0.25, G:0.00, T:0.47
Consensus pattern (14 bp):
TCTCAATTTCAATT
Found at i:37165012 original size:18 final size:19
Alignment explanation
Indices: 37164974--37165014 Score: 59
Period size: 18 Copynumber: 2.2 Consensus size: 19
37164964 TGGTTCATGT
37164974 TTTCAATCTCATATCTCAA
1 TTTCAATCTCATATCTCAA
37164993 TTTCAATTCTCA-AT-TCAA
1 TTTCAA-TCTCATATCTCAA
37165011 TTTC
1 TTTC
37165015 TCATTTCATT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
18 8 0.38
19 8 0.38
20 5 0.24
ACGTcount: A:0.29, C:0.24, G:0.00, T:0.46
Consensus pattern (19 bp):
TTTCAATCTCATATCTCAA
Found at i:37165204 original size:39 final size:38
Alignment explanation
Indices: 37165137--37165271 Score: 101
Period size: 39 Copynumber: 3.4 Consensus size: 38
37165127 ACCAATATGG
* * *
37165137 CACCCAGTGCCTCATCGGATAGTTCGAAGCAATATTTGA
1 CACCCAGTGCCTCATCGGCTAG-CCGAAGAAATATTTGA
* * * *
37165176 CACCCAGTGTCTCATCGGCCTAGCCGAAGTAA-AGTTGG
1 CACCCAGTGCCTCATCGG-CTAGCCGAAGAAATATTTGA
* * * * *
37165214 TACCCAGTACCTCATCGAATCTATCCGAAGAAATATAGTGA
1 CACCCAGTGCCTCATCG--GCTAGCCGAAGAAATAT-TTGA
*
37165255 CACCCAGTGTCTCATCG
1 CACCCAGTGCCTCATCG
37165272 ACTCGAGGTC
Statistics
Matches: 73, Mismatches: 18, Indels: 8
0.74 0.18 0.08
Matches are distributed among these distances:
38 18 0.25
39 35 0.48
40 4 0.05
41 16 0.22
ACGTcount: A:0.28, C:0.28, G:0.20, T:0.24
Consensus pattern (38 bp):
CACCCAGTGCCTCATCGGCTAGCCGAAGAAATATTTGA
Found at i:37165537 original size:18 final size:19
Alignment explanation
Indices: 37165511--37165549 Score: 62
Period size: 18 Copynumber: 2.1 Consensus size: 19
37165501 TTTCAATTCA
37165511 ATTCAAATAATCAATATAT
1 ATTCAAATAATCAATATAT
*
37165530 ATTC-AATATTCAATATAT
1 ATTCAAATAATCAATATAT
37165548 AT
1 AT
37165550 ATCTATATAT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 15 0.79
19 4 0.21
ACGTcount: A:0.49, C:0.10, G:0.00, T:0.41
Consensus pattern (19 bp):
ATTCAAATAATCAATATAT
Found at i:37166209 original size:5 final size:5
Alignment explanation
Indices: 37166188--37166243 Score: 60
Period size: 5 Copynumber: 11.0 Consensus size: 5
37166178 TTACTTATTT
* * *
37166188 ATATA ATAAA TATATA ATATA ATATA CTATA ATATA ATAATA ATTTA ATAT-
1 ATATA ATATA -ATATA ATATA ATATA ATATA ATATA AT-ATA ATATA ATATA
37166239 ATATA
1 ATATA
37166244 TTTTAACACA
Statistics
Matches: 42, Mismatches: 6, Indels: 6
0.78 0.11 0.11
Matches are distributed among these distances:
4 4 0.10
5 29 0.69
6 9 0.21
ACGTcount: A:0.57, C:0.02, G:0.00, T:0.41
Consensus pattern (5 bp):
ATATA
Found at i:37166218 original size:10 final size:10
Alignment explanation
Indices: 37166188--37166243 Score: 60
Period size: 11 Copynumber: 5.5 Consensus size: 10
37166178 TTACTTATTT
*
37166188 ATATAATAAA
1 ATATAATATA
37166198 TATATAATATA
1 -ATATAATATA
*
37166209 ATATACTATA
1 ATATAATATA
37166219 ATATAATAATA
1 ATATAAT-ATA
*
37166230 ATTTAATAT-
1 ATATAATATA
37166239 ATATA
1 ATATA
37166244 TTTTAACACA
Statistics
Matches: 39, Mismatches: 5, Indels: 4
0.81 0.10 0.08
Matches are distributed among these distances:
9 4 0.10
10 17 0.44
11 18 0.46
ACGTcount: A:0.57, C:0.02, G:0.00, T:0.41
Consensus pattern (10 bp):
ATATAATATA
Found at i:37166230 original size:26 final size:25
Alignment explanation
Indices: 37166187--37166243 Score: 80
Period size: 26 Copynumber: 2.2 Consensus size: 25
37166177 TTTACTTATT
37166187 TATATAATAAATATATAATATAATA
1 TATATAATAAATATATAATATAATA
*
37166212 TACTATAATATAATA-ATAATTTAATA
1 TA-TATAATA-AATATATAATATAATA
37166238 TATATA
1 TATATA
37166244 TTTTAACACA
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
25 6 0.21
26 19 0.66
27 4 0.14
ACGTcount: A:0.56, C:0.02, G:0.00, T:0.42
Consensus pattern (25 bp):
TATATAATAAATATATAATATAATA
Found at i:37169214 original size:32 final size:31
Alignment explanation
Indices: 37169178--37169255 Score: 84
Period size: 31 Copynumber: 2.5 Consensus size: 31
37169168 TGTATTAACA
* * * **
37169178 TAAAATTTTACAATTTTTCAAGGGATTAAGTT
1 TAAAATTTT-CAAATTTTCAAAGGATCAAAAT
*
37169210 TAAAATTTTCAAATTTTGAAAGGATCAAAAT
1 TAAAATTTTCAAATTTTCAAAGGATCAAAAT
*
37169241 TAAAATTTTGAAATT
1 TAAAATTTTCAAATT
37169256 ATTAAAGTAA
Statistics
Matches: 39, Mismatches: 7, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
31 30 0.77
32 9 0.23
ACGTcount: A:0.44, C:0.05, G:0.10, T:0.41
Consensus pattern (31 bp):
TAAAATTTTCAAATTTTCAAAGGATCAAAAT
Done.