Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr9
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 91122320
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2661692 characters in sequence are not A, C, G, or T
File 163 of 279
Found at i:53780714 original size:37 final size:37
Alignment explanation
Indices: 53780669--53780744 Score: 152
Period size: 37 Copynumber: 2.1 Consensus size: 37
53780659 CTTATTTTCG
53780669 TGAAGGTTGTTTTTGTCATTTTGTGTCATGGATTATT
1 TGAAGGTTGTTTTTGTCATTTTGTGTCATGGATTATT
53780706 TGAAGGTTGTTTTTGTCATTTTGTGTCATGGATTATT
1 TGAAGGTTGTTTTTGTCATTTTGTGTCATGGATTATT
53780743 TG
1 TG
53780745 GCAGCGTGAC
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 39 1.00
ACGTcount: A:0.16, C:0.05, G:0.25, T:0.54
Consensus pattern (37 bp):
TGAAGGTTGTTTTTGTCATTTTGTGTCATGGATTATT
Found at i:53785664 original size:15 final size:15
Alignment explanation
Indices: 53785644--53785673 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
53785634 AGAAGTTTTT
53785644 CTCCAGCATCAACAG
1 CTCCAGCATCAACAG
53785659 CTCCAGCATCAACAG
1 CTCCAGCATCAACAG
53785674 TATCAGGTTC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.33, C:0.40, G:0.13, T:0.13
Consensus pattern (15 bp):
CTCCAGCATCAACAG
Found at i:53801177 original size:34 final size:34
Alignment explanation
Indices: 53801134--53801202 Score: 138
Period size: 34 Copynumber: 2.0 Consensus size: 34
53801124 TTAGATACAT
53801134 GGGACATGCAAATGTTGCCATAAGTACAAACTTG
1 GGGACATGCAAATGTTGCCATAAGTACAAACTTG
53801168 GGGACATGCAAATGTTGCCATAAGTACAAACTTG
1 GGGACATGCAAATGTTGCCATAAGTACAAACTTG
53801202 G
1 G
53801203 ATCTGTGTGA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 35 1.00
ACGTcount: A:0.35, C:0.17, G:0.25, T:0.23
Consensus pattern (34 bp):
GGGACATGCAAATGTTGCCATAAGTACAAACTTG
Found at i:53802112 original size:22 final size:23
Alignment explanation
Indices: 53802071--53802113 Score: 61
Period size: 22 Copynumber: 1.9 Consensus size: 23
53802061 ATTCAAATCC
* *
53802071 ATTTTAAATTCACTTCTATTATT
1 ATTTTAAAATCACTTATATTATT
53802094 ATTTTAAAAT-ACTTATATTA
1 ATTTTAAAATCACTTATATTA
53802114 CTTTTAATTT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 9 0.50
23 9 0.50
ACGTcount: A:0.37, C:0.09, G:0.00, T:0.53
Consensus pattern (23 bp):
ATTTTAAAATCACTTATATTATT
Found at i:53806596 original size:18 final size:17
Alignment explanation
Indices: 53806563--53806601 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 17
53806553 TTGTATAAAT
53806563 TGTGAATTATATTTGATA
1 TGTGAATTATATTTGA-A
53806581 TGTGAATTA-ATATTGAA
1 TGTGAATTATAT-TTGAA
53806598 TGTG
1 TGTG
53806602 GAAGGAAAGT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
17 7 0.35
18 13 0.65
ACGTcount: A:0.33, C:0.00, G:0.21, T:0.46
Consensus pattern (17 bp):
TGTGAATTATATTTGAA
Found at i:53806854 original size:23 final size:23
Alignment explanation
Indices: 53806828--53806901 Score: 114
Period size: 23 Copynumber: 3.3 Consensus size: 23
53806818 GTGTTATTGA
53806828 TCAGTGGTAGCTTCGGCTACATT
1 TCAGTGGTAGCTTCGGCTACATT
*
53806851 TCAGTGGTAGCTTTGGCTACA-T
1 TCAGTGGTAGCTTCGGCTACATT
* *
53806873 CCAGTGGTAGCTTCGGCTACATA
1 TCAGTGGTAGCTTCGGCTACATT
53806896 TCAGTG
1 TCAGTG
53806902 TGGCACTTAT
Statistics
Matches: 45, Mismatches: 5, Indels: 2
0.87 0.10 0.04
Matches are distributed among these distances:
22 20 0.44
23 25 0.56
ACGTcount: A:0.19, C:0.22, G:0.27, T:0.32
Consensus pattern (23 bp):
TCAGTGGTAGCTTCGGCTACATT
Found at i:53806880 original size:22 final size:22
Alignment explanation
Indices: 53806829--53806894 Score: 105
Period size: 22 Copynumber: 3.0 Consensus size: 22
53806819 TGTTATTGAT
*
53806829 CAGTGGTAGCTTCGGCTACATTT
1 CAGTGGTAGCTTCGGCTACA-TC
*
53806852 CAGTGGTAGCTTTGGCTACATC
1 CAGTGGTAGCTTCGGCTACATC
53806874 CAGTGGTAGCTTCGGCTACAT
1 CAGTGGTAGCTTCGGCTACAT
53806895 ATCAGTGTGG
Statistics
Matches: 40, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
22 21 0.52
23 19 0.47
ACGTcount: A:0.18, C:0.23, G:0.27, T:0.32
Consensus pattern (22 bp):
CAGTGGTAGCTTCGGCTACATC
Found at i:53809135 original size:19 final size:19
Alignment explanation
Indices: 53809070--53809137 Score: 77
Period size: 18 Copynumber: 3.7 Consensus size: 19
53809060 AATTGATCGG
* *
53809070 TTATCCAGTAACAGTC-AA
1 TTATTCAGTAACAATCAAA
*
53809088 TTATTCAGTAAAAATCAAA
1 TTATTCAGTAACAATCAAA
* *
53809107 -TATACAGTAACAATTAAA
1 TTATTCAGTAACAATCAAA
53809125 TTATTCAGTAACA
1 TTATTCAGTAACA
53809138 GTCGATCTTT
Statistics
Matches: 41, Mismatches: 7, Indels: 3
0.80 0.14 0.06
Matches are distributed among these distances:
18 28 0.68
19 13 0.32
ACGTcount: A:0.47, C:0.15, G:0.07, T:0.31
Consensus pattern (19 bp):
TTATTCAGTAACAATCAAA
Found at i:53809533 original size:16 final size:16
Alignment explanation
Indices: 53809504--53809537 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 16
53809494 TAATTCACTT
53809504 TTCAATTTTCAATTAA
1 TTCAATTTTCAATTAA
53809520 TTCATATTTT-AATTAA
1 TTCA-ATTTTCAATTAA
53809536 TT
1 TT
53809538 AACTATATTT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 12 0.71
17 5 0.29
ACGTcount: A:0.35, C:0.09, G:0.00, T:0.56
Consensus pattern (16 bp):
TTCAATTTTCAATTAA
Found at i:53810420 original size:15 final size:15
Alignment explanation
Indices: 53810400--53810437 Score: 58
Period size: 15 Copynumber: 2.5 Consensus size: 15
53810390 AATTTTCCCC
*
53810400 TTTTTCCTTCTTTCT
1 TTTTTCCTTCCTTCT
53810415 TTTTTCCTTCCTTCT
1 TTTTTCCTTCCTTCT
53810430 TTCTTTCC
1 TT-TTTCC
53810438 CCTGCTCTGT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
15 16 0.76
16 5 0.24
ACGTcount: A:0.00, C:0.32, G:0.00, T:0.68
Consensus pattern (15 bp):
TTTTTCCTTCCTTCT
Found at i:53820906 original size:29 final size:29
Alignment explanation
Indices: 53820869--53820935 Score: 116
Period size: 29 Copynumber: 2.3 Consensus size: 29
53820859 GGTTAATTGG
53820869 TCGGTTAATCGAATTAATTCAGTCAGAGA
1 TCGGTTAATCGAATTAATTCAGTCAGAGA
* *
53820898 TTGGTTAATCGAATTAATTCAGTCAGAGG
1 TCGGTTAATCGAATTAATTCAGTCAGAGA
53820927 TCGGTTAAT
1 TCGGTTAAT
53820936 AATTTTTTGA
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
29 35 1.00
ACGTcount: A:0.31, C:0.12, G:0.22, T:0.34
Consensus pattern (29 bp):
TCGGTTAATCGAATTAATTCAGTCAGAGA
Found at i:53821202 original size:7 final size:6
Alignment explanation
Indices: 53821149--53821201 Score: 61
Period size: 6 Copynumber: 8.5 Consensus size: 6
53821139 ATAATTTAAT
* * *
53821149 AAATAA AAATAA AAATTTAA AACTAA AACTAA AACTAA AAATAA AAATAA
1 AAATAA AAATAA AAA--TAA AAATAA AAATAA AAATAA AAATAA AAATAA
53821199 AAA
1 AAA
53821202 AATATAATTT
Statistics
Matches: 43, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
6 38 0.88
8 5 0.12
ACGTcount: A:0.75, C:0.06, G:0.00, T:0.19
Consensus pattern (6 bp):
AAATAA
Found at i:53824283 original size:16 final size:16
Alignment explanation
Indices: 53824264--53824337 Score: 65
Period size: 14 Copynumber: 5.1 Consensus size: 16
53824254 ATTTTAATAG
53824264 AATTATTATTAAAAAT
1 AATTATTATTAAAAAT
*
53824280 AA-T-TTAATAAAAAT
1 AATTATTATTAAAAAT
*
53824294 AA-TATT-TTAATAAT
1 AATTATTATTAAAAAT
*
53824308 --TTAATA-TAAAAAT
1 AATTATTATTAAAAAT
53824321 AATTA-TATTAAAAAT
1 AATTATTATTAAAAAT
53824336 AA
1 AA
53824338 AAATAATTAT
Statistics
Matches: 47, Mismatches: 5, Indels: 13
0.72 0.08 0.20
Matches are distributed among these distances:
13 9 0.19
14 21 0.45
15 15 0.32
16 2 0.04
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (16 bp):
AATTATTATTAAAAAT
Found at i:53824322 original size:41 final size:44
Alignment explanation
Indices: 53824254--53824337 Score: 120
Period size: 42 Copynumber: 2.0 Consensus size: 44
53824244 TAATTATTAA
*
53824254 ATTTTAATAGAATTATTATTAAAAATAATT-TAATAAAAATAAT
1 ATTTTAATAGAATTAATATTAAAAATAATTATAATAAAAATAAT
* *
53824297 ATTTTAATA-ATTTAATA-TAAAAATAATTATATTAAAAATAA
1 ATTTTAATAGAATTAATATTAAAAATAATTATAATAAAAATAA
53824338 AAATAATTAT
Statistics
Matches: 37, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
41 11 0.30
42 17 0.46
43 9 0.24
ACGTcount: A:0.57, C:0.00, G:0.01, T:0.42
Consensus pattern (44 bp):
ATTTTAATAGAATTAATATTAAAAATAATTATAATAAAAATAAT
Found at i:53824341 original size:48 final size:48
Alignment explanation
Indices: 53824285--53824381 Score: 126
Period size: 48 Copynumber: 2.0 Consensus size: 48
53824275 AAAATAATTT
*
53824285 AATAAAAATAA-TATTTTAATAATTTA-ATATAAAAATAATTATATTAAA
1 AATAAAAATAATTATATT-AT-ATTTATATATAAAAATAATTATATTAAA
* * *
53824333 AATAAAAATAATTATATTATTTTTATATTTAATAATAATTATATTAAA
1 AATAAAAATAATTATATTATATTTATATATAAAAATAATTATATTAAA
53824381 A
1 A
53824382 TATTAGAAAT
Statistics
Matches: 43, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
47 4 0.09
48 34 0.79
49 5 0.12
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (48 bp):
AATAAAAATAATTATATTATATTTATATATAAAAATAATTATATTAAA
Found at i:53832240 original size:16 final size:18
Alignment explanation
Indices: 53832213--53832247 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 18
53832203 AAAAATTAAA
53832213 AATATATTAT-AAATTTT
1 AATATATTATAAAATTTT
53832230 AATAT-TTATAAAATTTT
1 AATATATTATAAAATTTT
53832247 A
1 A
53832248 TAAATTACAT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 4 0.24
17 13 0.76
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (18 bp):
AATATATTATAAAATTTT
Found at i:53832920 original size:20 final size:20
Alignment explanation
Indices: 53832877--53832920 Score: 52
Period size: 20 Copynumber: 2.2 Consensus size: 20
53832867 TATTTTACAA
* *
53832877 TTTTTAATATTTTTTATAAG
1 TTTTTAATAATTTTTATAAC
* *
53832897 TTTTTGATAATTTTTATTAC
1 TTTTTAATAATTTTTATAAC
53832917 TTTT
1 TTTT
53832921 CGCAATTGTA
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.25, C:0.02, G:0.05, T:0.68
Consensus pattern (20 bp):
TTTTTAATAATTTTTATAAC
Found at i:53834590 original size:25 final size:25
Alignment explanation
Indices: 53834562--53834609 Score: 62
Period size: 25 Copynumber: 1.9 Consensus size: 25
53834552 TCATTATAAA
*
53834562 TTTAGAATTT-AAATTTTACATTTTT
1 TTTA-AATTTCAAAATTTACATTTTT
*
53834587 TTTAAATTTCAAAATTTATATTT
1 TTTAAATTTCAAAATTTACATTT
53834610 AATTATTAGG
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
24 5 0.25
25 15 0.75
ACGTcount: A:0.35, C:0.04, G:0.02, T:0.58
Consensus pattern (25 bp):
TTTAAATTTCAAAATTTACATTTTT
Found at i:53843538 original size:41 final size:41
Alignment explanation
Indices: 53843493--53843573 Score: 103
Period size: 41 Copynumber: 2.0 Consensus size: 41
53843483 ATATTTTAAT
*
53843493 AATTGATTGAATGATTTGAATTGATA-G-ATATATATATATTG
1 AATTGATT-AAT-ATTTGAATTGAAATGAATATATATATATTG
* *
53843534 AATTGATTAATTTTTGAATTGAAATGAATATATGTATATT
1 AATTGATTAATATTTGAATTGAAATGAATATATATATATT
53843574 TATGTGATTA
Statistics
Matches: 35, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
39 11 0.31
40 4 0.11
41 20 0.57
ACGTcount: A:0.40, C:0.00, G:0.15, T:0.46
Consensus pattern (41 bp):
AATTGATTAATATTTGAATTGAAATGAATATATATATATTG
Found at i:53845326 original size:10 final size:10
Alignment explanation
Indices: 53845311--53845342 Score: 64
Period size: 10 Copynumber: 3.2 Consensus size: 10
53845301 GACATGTCAT
53845311 AATTGAGTCG
1 AATTGAGTCG
53845321 AATTGAGTCG
1 AATTGAGTCG
53845331 AATTGAGTCG
1 AATTGAGTCG
53845341 AA
1 AA
53845343 ATTGGATGCT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 22 1.00
ACGTcount: A:0.34, C:0.09, G:0.28, T:0.28
Consensus pattern (10 bp):
AATTGAGTCG
Found at i:53846187 original size:46 final size:46
Alignment explanation
Indices: 53846122--53846395 Score: 370
Period size: 46 Copynumber: 6.0 Consensus size: 46
53846112 TTATCTTTGA
* * * *
53846122 CATGATGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTC-TGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACTCA-TTTCATGT
*
53846168 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATGT
* *
53846214 CACGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATGT
* * * * **
53846260 CACGCTGCCATGGTATCTTTCAACCATGGTCTTATTTATTTCCCGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATGT
* *
53846306 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATGT
* * *
53846352 CAGGGTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCAT
53846396 ATCAGAGAGC
Statistics
Matches: 207, Mismatches: 20, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
45 4 0.02
46 203 0.98
ACGTcount: A:0.20, C:0.24, G:0.15, T:0.40
Consensus pattern (46 bp):
CATGTTGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATGT
Found at i:53846375 original size:138 final size:138
Alignment explanation
Indices: 53846127--53846395 Score: 412
Period size: 138 Copynumber: 1.9 Consensus size: 138
53846117 TTTGACATGA
* * * *
53846127 TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTCTGTCATGTTGCCATGGTATCTTTCAAC
1 TGCCATAGTATCTTTCAACCATGGTCTTACTCATTTCCCGTCATGTTGCCATGGTATCTTTCAAC
** * * **
53846192 CATGGTCTTATTCATTTCATGTCACGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCA
66 CATGGTCTTACACATTTCATATCACGGTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCA
53846257 TGTCACGC
131 TGTCACGC
* * *
53846265 TGCCATGGTATCTTTCAACCATGGTCTTATTTATTTCCCGTCATGTTGCCATGGTATCTTTCAAC
1 TGCCATAGTATCTTTCAACCATGGTCTTACTCATTTCCCGTCATGTTGCCATGGTATCTTTCAAC
*
53846330 CATGGTCTTACACATTTCATATCAGGGTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCA
66 CATGGTCTTACACATTTCATATCACGGTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCA
53846395 T
131 T
53846396 ATCAGAGAGC
Statistics
Matches: 117, Mismatches: 14, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
138 117 1.00
ACGTcount: A:0.20, C:0.24, G:0.15, T:0.41
Consensus pattern (138 bp):
TGCCATAGTATCTTTCAACCATGGTCTTACTCATTTCCCGTCATGTTGCCATGGTATCTTTCAAC
CATGGTCTTACACATTTCATATCACGGTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCA
TGTCACGC
Found at i:53848574 original size:18 final size:20
Alignment explanation
Indices: 53848559--53848595 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
53848549 TAATAATAAA
*
53848559 ATATCTCATTAAAATAATAT
1 ATATCTAATTAAAATAATAT
53848579 ATATCTAATT-AAATAAT
1 ATATCTAATTAAAATAAT
53848596 CATAAAATAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
19 7 0.44
20 9 0.56
ACGTcount: A:0.51, C:0.08, G:0.00, T:0.41
Consensus pattern (20 bp):
ATATCTAATTAAAATAATAT
Found at i:53853738 original size:16 final size:16
Alignment explanation
Indices: 53853717--53853750 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
53853707 AAATAATTAT
*
53853717 TATTATGTTAATATAA
1 TATTATATTAATATAA
53853733 TATTATATTAATATAA
1 TATTATATTAATATAA
53853749 TA
1 TA
53853751 AACATAAAGT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (16 bp):
TATTATATTAATATAA
Found at i:53853780 original size:21 final size:22
Alignment explanation
Indices: 53853742--53853785 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 22
53853732 ATATTATATT
*
53853742 AATATAATAAACATAAAGTAAAA
1 AATATAATAAACACAAAG-AAAA
53853765 AATA-AATAAA-ACAAAGAAAA
1 AATATAATAAACACAAAGAAAA
53853785 A
1 A
53853786 GAAGAACGGA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
20 5 0.25
21 5 0.25
22 6 0.30
23 4 0.20
ACGTcount: A:0.75, C:0.05, G:0.05, T:0.16
Consensus pattern (22 bp):
AATATAATAAACACAAAGAAAA
Found at i:53855011 original size:31 final size:31
Alignment explanation
Indices: 53854973--53855036 Score: 110
Period size: 31 Copynumber: 2.1 Consensus size: 31
53854963 ACTAGCCTAA
*
53854973 ATTTTCAGTGGTGTCAGAACAGTAATTCGAG
1 ATTTTCAGTAGTGTCAGAACAGTAATTCGAG
*
53855004 ATTTTCAGTAGTGTCAGAACAGTGATTCGAG
1 ATTTTCAGTAGTGTCAGAACAGTAATTCGAG
53855035 AT
1 AT
53855037 CACTAAATCC
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.30, C:0.12, G:0.25, T:0.33
Consensus pattern (31 bp):
ATTTTCAGTAGTGTCAGAACAGTAATTCGAG
Found at i:53856680 original size:51 final size:51
Alignment explanation
Indices: 53856601--53856710 Score: 202
Period size: 51 Copynumber: 2.2 Consensus size: 51
53856591 ACTTCTGATC
*
53856601 AGTGACAAGTGATAAGTGGTAGCCTTAGCTACACTTATCTGATCAGTGACA
1 AGTGATAAGTGATAAGTGGTAGCCTTAGCTACACTTATCTGATCAGTGACA
*
53856652 AGTGATAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAGTGACA
1 AGTGATAAGTGATAAGTGGTAGCCTTAGCTACACTTATCTGATCAGTGACA
53856703 AGTGATAA
1 AGTGATAA
53856711 ATGTGATCAG
Statistics
Matches: 57, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
51 57 1.00
ACGTcount: A:0.33, C:0.15, G:0.24, T:0.29
Consensus pattern (51 bp):
AGTGATAAGTGATAAGTGGTAGCCTTAGCTACACTTATCTGATCAGTGACA
Found at i:53870793 original size:12 final size:13
Alignment explanation
Indices: 53870776--53870804 Score: 51
Period size: 12 Copynumber: 2.3 Consensus size: 13
53870766 ATTAAACTGA
53870776 TTTTTTTATAA-T
1 TTTTTTTATAACT
53870788 TTTTTTTATAACT
1 TTTTTTTATAACT
53870801 TTTT
1 TTTT
53870805 AATATTTTAT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 11 0.69
13 5 0.31
ACGTcount: A:0.21, C:0.03, G:0.00, T:0.76
Consensus pattern (13 bp):
TTTTTTTATAACT
Found at i:53885603 original size:6 final size:6
Alignment explanation
Indices: 53885592--53885622 Score: 53
Period size: 6 Copynumber: 5.2 Consensus size: 6
53885582 CAATTTCATG
*
53885592 TGCATT TGCATT TGCATT TGCATT TGAATT T
1 TGCATT TGCATT TGCATT TGCATT TGCATT T
53885623 TATGGGTCCC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
6 24 1.00
ACGTcount: A:0.19, C:0.13, G:0.16, T:0.52
Consensus pattern (6 bp):
TGCATT
Found at i:53903128 original size:6 final size:6
Alignment explanation
Indices: 53903117--53903147 Score: 53
Period size: 6 Copynumber: 5.2 Consensus size: 6
53903107 CAATTTCATG
*
53903117 TGCATT TGCATT TGCATT TGCATT TGAATT T
1 TGCATT TGCATT TGCATT TGCATT TGCATT T
53903148 TATGGGTCCC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
6 24 1.00
ACGTcount: A:0.19, C:0.13, G:0.16, T:0.52
Consensus pattern (6 bp):
TGCATT
Found at i:53907549 original size:35 final size:33
Alignment explanation
Indices: 53907503--53907568 Score: 96
Period size: 35 Copynumber: 1.9 Consensus size: 33
53907493 CAAACAGCTG
*
53907503 AAAATATTTTCCAGTAAATTATTTTACAGAAAAGT
1 AAAATATTTTCCAG-AAATCATTTTAC-GAAAAGT
*
53907538 AAAATATTTTCCTGAAATCATTTTACGAAAA
1 AAAATATTTTCCAGAAATCATTTTACGAAAA
53907569 ATATTTTACT
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
33 5 0.17
34 11 0.38
35 13 0.45
ACGTcount: A:0.45, C:0.11, G:0.08, T:0.36
Consensus pattern (33 bp):
AAAATATTTTCCAGAAATCATTTTACGAAAAGT
Found at i:53920409 original size:20 final size:19
Alignment explanation
Indices: 53920364--53920410 Score: 58
Period size: 20 Copynumber: 2.4 Consensus size: 19
53920354 GGTCAGTATC
*
53920364 AAATTTTGTTTATAATTTT
1 AAATTTTGTTAATAATTTT
*
53920383 ATGATTTTGTTAATAATTTTT
1 A-AATTTTGTTAATAA-TTTT
53920404 AAATTTT
1 AAATTTT
53920411 AAAAGGGTTT
Statistics
Matches: 23, Mismatches: 3, Indels: 3
0.79 0.10 0.10
Matches are distributed among these distances:
19 1 0.04
20 17 0.74
21 5 0.22
ACGTcount: A:0.32, C:0.00, G:0.06, T:0.62
Consensus pattern (19 bp):
AAATTTTGTTAATAATTTT
Found at i:53923993 original size:27 final size:27
Alignment explanation
Indices: 53923962--53924014 Score: 106
Period size: 27 Copynumber: 2.0 Consensus size: 27
53923952 TATTAGAAAG
53923962 TAAAAACGAAAGGGAAATGAAAAGAAT
1 TAAAAACGAAAGGGAAATGAAAAGAAT
53923989 TAAAAACGAAAGGGAAATGAAAAGAA
1 TAAAAACGAAAGGGAAATGAAAAGAA
53924015 AATCAACAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.64, C:0.04, G:0.23, T:0.09
Consensus pattern (27 bp):
TAAAAACGAAAGGGAAATGAAAAGAAT
Found at i:53934626 original size:12 final size:12
Alignment explanation
Indices: 53934609--53934641 Score: 52
Period size: 11 Copynumber: 2.9 Consensus size: 12
53934599 TGGCAAGTCC
53934609 ATATTAATTTTT
1 ATATTAATTTTT
53934621 ATATT-ATTTTT
1 ATATTAATTTTT
53934632 ATA-TAATTTT
1 ATATTAATTTT
53934642 AAAATATATA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
10 1 0.05
11 14 0.70
12 5 0.25
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (12 bp):
ATATTAATTTTT
Found at i:53934798 original size:30 final size:30
Alignment explanation
Indices: 53934762--53934819 Score: 98
Period size: 30 Copynumber: 1.9 Consensus size: 30
53934752 CAATTTAACA
*
53934762 AGCAAATGTCTCTAAAATAATAACAAAAGT
1 AGCAAATGTCTCTAAAATAATAAAAAAAGT
*
53934792 AGCAAATGTCTTTAAAATAATAAAAAAA
1 AGCAAATGTCTCTAAAATAATAAAAAAA
53934820 TTAACAATAA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.57, C:0.10, G:0.09, T:0.24
Consensus pattern (30 bp):
AGCAAATGTCTCTAAAATAATAAAAAAAGT
Found at i:53943208 original size:12 final size:12
Alignment explanation
Indices: 53943193--53943223 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
53943183 TTCTCTTTTA
53943193 TTTTTCTTTCCC
1 TTTTTCTTTCCC
*
53943205 TTTTTCTTTCTC
1 TTTTTCTTTCCC
53943217 TTTTTCT
1 TTTTTCT
53943224 CCCCTGCTTC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.00, C:0.26, G:0.00, T:0.74
Consensus pattern (12 bp):
TTTTTCTTTCCC
Found at i:53943324 original size:16 final size:16
Alignment explanation
Indices: 53943303--53943333 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
53943293 TTTATTATTT
53943303 TATTAACATAATATAA
1 TATTAACATAATATAA
*
53943319 TATTAATATAATATA
1 TATTAACATAATATA
53943334 TTAAAATATC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.55, C:0.03, G:0.00, T:0.42
Consensus pattern (16 bp):
TATTAACATAATATAA
Found at i:53945591 original size:54 final size:54
Alignment explanation
Indices: 53945509--53945617 Score: 191
Period size: 54 Copynumber: 2.0 Consensus size: 54
53945499 AATTCAATTA
* *
53945509 CAGCTTTTCTGCTTAATGCATCAGCTACAACGTTAGCTTTTCCCGGATAATAGT
1 CAGCTTTTCTGCTTAATGCATCAGCTACAACATTAGCTCTTCCCGGATAATAGT
*
53945563 CAGCTTTTCTGCTTAATGCATCAGCTACAACATTAGCTCTTCCCGGATGATAGT
1 CAGCTTTTCTGCTTAATGCATCAGCTACAACATTAGCTCTTCCCGGATAATAGT
53945617 C
1 C
53945618 TATAACACAA
Statistics
Matches: 52, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
54 52 1.00
ACGTcount: A:0.24, C:0.26, G:0.17, T:0.34
Consensus pattern (54 bp):
CAGCTTTTCTGCTTAATGCATCAGCTACAACATTAGCTCTTCCCGGATAATAGT
Found at i:53951555 original size:15 final size:15
Alignment explanation
Indices: 53951535--53951569 Score: 70
Period size: 15 Copynumber: 2.3 Consensus size: 15
53951525 GACTAAATAA
53951535 CACCTATGTACATGC
1 CACCTATGTACATGC
53951550 CACCTATGTACATGC
1 CACCTATGTACATGC
53951565 CACCT
1 CACCT
53951570 TTACCTAAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.26, C:0.37, G:0.11, T:0.26
Consensus pattern (15 bp):
CACCTATGTACATGC
Found at i:53954656 original size:21 final size:23
Alignment explanation
Indices: 53954630--53954673 Score: 65
Period size: 21 Copynumber: 2.0 Consensus size: 23
53954620 AAATGTATGG
53954630 TAATAAAATATATA-AA-TGTAA
1 TAATAAAATATATACAATTGTAA
*
53954651 TAATAATATATATACAATTGTAA
1 TAATAAAATATATACAATTGTAA
53954674 CATATTTATT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
21 13 0.65
22 2 0.10
23 5 0.25
ACGTcount: A:0.57, C:0.02, G:0.05, T:0.36
Consensus pattern (23 bp):
TAATAAAATATATACAATTGTAA
Found at i:53954663 original size:23 final size:21
Alignment explanation
Indices: 53954630--53954673 Score: 52
Period size: 23 Copynumber: 2.0 Consensus size: 21
53954620 AAATGTATGG
*
53954630 TAATAAAATATATAAATGTAA
1 TAATAAAATATACAAATGTAA
*
53954651 TAATAATATATATACAATTGTAA
1 TAATAA-A-ATATACAAATGTAA
53954674 CATATTTATT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
21 6 0.32
22 1 0.05
23 12 0.63
ACGTcount: A:0.57, C:0.02, G:0.05, T:0.36
Consensus pattern (21 bp):
TAATAAAATATACAAATGTAA
Found at i:53956266 original size:39 final size:39
Alignment explanation
Indices: 53956218--53956364 Score: 186
Period size: 39 Copynumber: 3.8 Consensus size: 39
53956208 TTAATAGGGG
*
53956218 TAAACTACTGTACTGAATAATTGATAGTTACTGAATAAC
1 TAAACTACTGTACTAAATAATTGATAGTTACTGAATAAC
* * *
53956257 TAAATTACTGTATTAAATAATTGATAGTTATTGAATAAC
1 TAAACTACTGTACTAAATAATTGATAGTTACTGAATAAC
* * * * *
53956296 TAAACTACTGCACTGAATATTTGATACTTACTGAATGAC
1 TAAACTACTGTACTAAATAATTGATAGTTACTGAATAAC
* * *
53956335 TAAATTACTGTACTAAATAACTGATTGTTA
1 TAAACTACTGTACTAAATAATTGATAGTTA
53956365 TTGATTGTTT
Statistics
Matches: 89, Mismatches: 19, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
39 89 1.00
ACGTcount: A:0.40, C:0.12, G:0.12, T:0.37
Consensus pattern (39 bp):
TAAACTACTGTACTAAATAATTGATAGTTACTGAATAAC
Found at i:53956293 original size:18 final size:18
Alignment explanation
Indices: 53956231--53956294 Score: 56
Period size: 18 Copynumber: 3.4 Consensus size: 18
53956221 ACTACTGTAC
*
53956231 TGAATAATTGATAGTTAC
1 TGAATAATTGATAGTTAT
** *
53956249 TGAATAACTAAATTACTGTAT
1 TGAATAA-TTGA-TAGT-TAT
*
53956270 TAAATAATTGATAGTTAT
1 TGAATAATTGATAGTTAT
53956288 TGAATAA
1 TGAATAA
53956295 CTAAACTACT
Statistics
Matches: 34, Mismatches: 9, Indels: 6
0.69 0.18 0.12
Matches are distributed among these distances:
18 16 0.47
19 5 0.15
20 5 0.15
21 8 0.24
ACGTcount: A:0.44, C:0.05, G:0.12, T:0.39
Consensus pattern (18 bp):
TGAATAATTGATAGTTAT
Found at i:53956344 original size:78 final size:78
Alignment explanation
Indices: 53956218--53956368 Score: 239
Period size: 78 Copynumber: 1.9 Consensus size: 78
53956208 TTAATAGGGG
* * * *
53956218 TAAACTACTGTACTGAATAATTGATAGTTACTGAATAACTAAATTACTGTATTAAATAATTGATA
1 TAAACTACTGCACTGAATAATTGATACTTACTGAATAACTAAATTACTGTACTAAATAACTGATA
53956283 GTTATTGAATAAC
66 GTTATTGAATAAC
* * *
53956296 TAAACTACTGCACTGAATATTTGATACTTACTGAATGACTAAATTACTGTACTAAATAACTGATT
1 TAAACTACTGCACTGAATAATTGATACTTACTGAATAACTAAATTACTGTACTAAATAACTGATA
53956361 GTTATTGA
66 GTTATTGA
53956369 TTGTTTGATA
Statistics
Matches: 66, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
78 66 1.00
ACGTcount: A:0.40, C:0.11, G:0.12, T:0.37
Consensus pattern (78 bp):
TAAACTACTGCACTGAATAATTGATACTTACTGAATAACTAAATTACTGTACTAAATAACTGATA
GTTATTGAATAAC
Found at i:53958729 original size:111 final size:111
Alignment explanation
Indices: 53958590--53958805 Score: 407
Period size: 111 Copynumber: 1.9 Consensus size: 111
53958580 ATAATAATAA
*
53958590 AATTATAGAAATTGTTGCATATGAACATGAAATGTATTCAATTGATAATTAAATTTATTTATTTA
1 AATTATAGAAATTGTTGCATATGAACATGAAATGTATTAAATTGATAATTAAATTTATTTATTTA
53958655 GATCCAGAAGATTCAAATACGAAGCTAGATCGAGGAAAGATGGTTG
66 GATCCAGAAGATTCAAATACGAAGCTAGATCGAGGAAAGATGGTTG
53958701 AATTATAGAGAA-TGTTGCATATGAACATGAAATGTATTAAATTGATAATTAAATTTATTTATTT
1 AATTATAGA-AATTGTTGCATATGAACATGAAATGTATTAAATTGATAATTAAATTTATTTATTT
53958765 AGATCCAGAAGATTCAAATACGAAGCTAGATCGAGGAAAGA
65 AGATCCAGAAGATTCAAATACGAAGCTAGATCGAGGAAAGA
53958806 AAAAAGTTTA
Statistics
Matches: 103, Mismatches: 1, Indels: 2
0.97 0.01 0.02
Matches are distributed among these distances:
111 101 0.98
112 2 0.02
ACGTcount: A:0.42, C:0.08, G:0.18, T:0.32
Consensus pattern (111 bp):
AATTATAGAAATTGTTGCATATGAACATGAAATGTATTAAATTGATAATTAAATTTATTTATTTA
GATCCAGAAGATTCAAATACGAAGCTAGATCGAGGAAAGATGGTTG
Found at i:53966512 original size:46 final size:46
Alignment explanation
Indices: 53966462--53966637 Score: 225
Period size: 46 Copynumber: 3.8 Consensus size: 46
53966452 TGGTTGAGCA
53966462 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
53966508 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
53966553 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
53966601 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
53966638 GCGGGTTACA
Statistics
Matches: 112, Mismatches: 9, Indels: 18
0.81 0.06 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.04
45 3 0.03
46 64 0.57
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:53966618 original size:93 final size:93
Alignment explanation
Indices: 53966459--53966629 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
53966449 GGATGGTTGA
* *
53966459 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
53966524 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
53966552 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
53966617 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
53966630 ACTTATGGGC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.21, C:0.22, G:0.29, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:53969601 original size:15 final size:15
Alignment explanation
Indices: 53969562--53969641 Score: 76
Period size: 15 Copynumber: 5.4 Consensus size: 15
53969552 ATATCTTGGG
*
53969562 TTTCTTTATCCTGGA
1 TTTCTTTATTCTGGA
*
53969577 TATCTTTATTCTGGA
1 TTTCTTTATTCTGGA
*
53969592 TTTCTTTATTCCAGG-
1 TTTCTTTATT-CTGGA
*
53969607 TTTCTCTA-TCTTGGA
1 TTTCTTTATTC-TGGA
*
53969622 TTTCTTTATTC-GGT
1 TTTCTTTATTCTGGA
53969636 TTTCTT
1 TTTCTT
53969642 GTTATCTTTG
Statistics
Matches: 53, Mismatches: 8, Indels: 9
0.76 0.11 0.13
Matches are distributed among these distances:
13 1 0.02
14 11 0.21
15 36 0.68
16 5 0.09
ACGTcount: A:0.12, C:0.17, G:0.12, T:0.57
Consensus pattern (15 bp):
TTTCTTTATTCTGGA
Found at i:53969631 original size:30 final size:31
Alignment explanation
Indices: 53969553--53969632 Score: 94
Period size: 30 Copynumber: 2.6 Consensus size: 31
53969543 CATAGTATCA
* * *
53969553 TATCTTGGGTTTCTTTA-TCCTGGATATCTT
1 TATCTTGGATTTCTTTATTCCAGGATATCTC
*
53969583 TAT-TCTGGATTTCTTTATTCCAGG-TTTCTC
1 TATCT-TGGATTTCTTTATTCCAGGATATCTC
53969613 TATCTTGGATTTCTTTATTC
1 TATCTTGGATTTCTTTATTC
53969633 GGTTTTCTTG
Statistics
Matches: 43, Mismatches: 4, Indels: 6
0.81 0.08 0.11
Matches are distributed among these distances:
29 1 0.02
30 36 0.84
31 6 0.14
ACGTcount: A:0.14, C:0.17, G:0.14, T:0.55
Consensus pattern (31 bp):
TATCTTGGATTTCTTTATTCCAGGATATCTC
Found at i:53979310 original size:41 final size:41
Alignment explanation
Indices: 53979249--53979452 Score: 259
Period size: 41 Copynumber: 5.0 Consensus size: 41
53979239 TTGTAAAACA
* * *
53979249 CAGATCAATAGAGGCGTTTTTGGTAAAACGCCACTAAAAAT
1 CAGAGCAATAGCGGCGTTTTTGGTAAAACGCCGCTAAAAAT
*
53979290 -AGAGCAATAGCGGCGCTTTTTGTTAAAACGCCCCGCTAAAAA-
1 CAGAGCAATAGCGGCG-TTTTTGGTAAAACG--CCGCTAAAAAT
* *
53979332 CAGAGCAATAGCGGCGGTTTTGGTAAAACGCCGCTAAAAGT
1 CAGAGCAATAGCGGCGTTTTTGGTAAAACGCCGCTAAAAAT
* *
53979373 CGGAGCAATAGCGGCGTTTTTGGTAAAACGCCGCTAAAAGT
1 CAGAGCAATAGCGGCGTTTTTGGTAAAACGCCGCTAAAAAT
* * * *
53979414 CGGAGCATTAGCGGCGCTTTTGATAAAACGCCGCTAAAA
1 CAGAGCAATAGCGGCGTTTTTGGTAAAACGCCGCTAAAA
53979453 GTCATATAAC
Statistics
Matches: 146, Mismatches: 12, Indels: 10
0.87 0.07 0.06
Matches are distributed among these distances:
40 22 0.15
41 88 0.60
42 12 0.08
43 24 0.16
ACGTcount: A:0.33, C:0.21, G:0.25, T:0.22
Consensus pattern (41 bp):
CAGAGCAATAGCGGCGTTTTTGGTAAAACGCCGCTAAAAAT
Found at i:53979446 original size:82 final size:83
Alignment explanation
Indices: 53979242--53979456 Score: 274
Period size: 83 Copynumber: 2.6 Consensus size: 83
53979232 ACAAAAATTG
* * * * *
53979242 TAAAACACAGATCAATAGAGGCGTTTTTGGTAAAACGCCACTAAAAAT-AGAGCAATAGCGGCGC
1 TAAAA-ACAGAGCAATAGCGGCGCTTTTGGTAAAACGCCGCTAAAAGTCAGAGCAATAGCGGCGC
*
53979306 TTTTTGTTAAAACGCCCCGC
65 TTTTTGGTAAAACG-CCCGC
* *
53979326 TAAAAACAGAGCAATAGCGGCGGTTTTGGTAAAACGCCGCTAAAAGTCGGAGCAATAGCGGCG-T
1 TAAAAACAGAGCAATAGCGGCGCTTTTGGTAAAACGCCGCTAAAAGTCAGAGCAATAGCGGCGCT
53979390 TTTTGGTAAAACG-CCGC
66 TTTTGGTAAAACGCCCGC
* * * *
53979407 TAAAAGTCGGAGCATTAGCGGCGCTTTTGATAAAACGCCGCTAAAAGTCA
1 TAAAA-ACAGAGCAATAGCGGCGCTTTTGGTAAAACGCCGCTAAAAGTCA
53979457 TATAACCCCT
Statistics
Matches: 116, Mismatches: 13, Indels: 6
0.86 0.10 0.04
Matches are distributed among these distances:
81 9 0.08
82 38 0.33
83 50 0.43
84 19 0.16
ACGTcount: A:0.34, C:0.20, G:0.24, T:0.21
Consensus pattern (83 bp):
TAAAAACAGAGCAATAGCGGCGCTTTTGGTAAAACGCCGCTAAAAGTCAGAGCAATAGCGGCGCT
TTTTGGTAAAACGCCCGC
Found at i:53979743 original size:15 final size:15
Alignment explanation
Indices: 53979693--53979743 Score: 54
Period size: 15 Copynumber: 3.5 Consensus size: 15
53979683 CGGTTTAATA
53979693 TTTAA-GGTTTAAGG
1 TTTAATGGTTTAAGG
*
53979707 TCT-ATGGTTT-AGG
1 TTTAATGGTTTAAGG
*
53979720 ATTTTATGGTTTAAGG
1 -TTTAATGGTTTAAGG
53979736 TTTAATGG
1 TTTAATGG
53979744 CCATGGGTAT
Statistics
Matches: 30, Mismatches: 3, Indels: 7
0.75 0.08 0.17
Matches are distributed among these distances:
13 4 0.13
14 9 0.30
15 14 0.47
16 3 0.10
ACGTcount: A:0.24, C:0.02, G:0.27, T:0.47
Consensus pattern (15 bp):
TTTAATGGTTTAAGG
Found at i:53980357 original size:15 final size:14
Alignment explanation
Indices: 53980340--53980386 Score: 67
Period size: 14 Copynumber: 3.4 Consensus size: 14
53980330 AATAAACTCA
53980340 AAAAATAAAAATTT
1 AAAAATAAAAATTT
* *
53980354 AAAATTTAAAATTT
1 AAAAATAAAAATTT
*
53980368 AAAAATAAAAAATT
1 AAAAATAAAAATTT
53980382 AAAAA
1 AAAAA
53980387 ACTTAAAAAT
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
14 28 1.00
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (14 bp):
AAAAATAAAAATTT
Found at i:53980387 original size:15 final size:15
Alignment explanation
Indices: 53980339--53980399 Score: 63
Period size: 15 Copynumber: 4.1 Consensus size: 15
53980329 AAATAAACTC
53980339 AAAAAA-TAAAAATT
1 AAAAAATTAAAAATT
* *
53980353 -TAAAATTTAAAATT
1 AAAAAATTAAAAATT
* *
53980367 TAAAAATAAAAAATT
1 AAAAAATTAAAAATT
53980382 AAAAAACTTAAAAATT
1 AAAAAA-TTAAAAATT
53980398 AA
1 AA
53980400 TATTTTAGTC
Statistics
Matches: 37, Mismatches: 7, Indels: 4
0.77 0.15 0.08
Matches are distributed among these distances:
13 4 0.11
14 7 0.19
15 16 0.43
16 10 0.27
ACGTcount: A:0.70, C:0.02, G:0.00, T:0.28
Consensus pattern (15 bp):
AAAAAATTAAAAATT
Found at i:53980394 original size:7 final size:7
Alignment explanation
Indices: 53980339--53980399 Score: 59
Period size: 7 Copynumber: 8.3 Consensus size: 7
53980329 AAATAAACTC
*
53980339 AAAAAAT
1 AAAAATT
53980346 AAAAATTT
1 AAAAA-TT
*
53980354 AAAATTT
1 AAAAATT
*
53980361 AAAATTT
1 AAAAATT
*
53980368 AAAAATA
1 AAAAATT
53980375 AAAAATT
1 AAAAATT
53980382 AAAAAACTT
1 -AAAAA-TT
53980391 AAAAATT
1 AAAAATT
53980398 AA
1 AA
53980400 TATTTTAGTC
Statistics
Matches: 46, Mismatches: 5, Indels: 6
0.81 0.09 0.11
Matches are distributed among these distances:
7 29 0.63
8 15 0.33
9 2 0.04
ACGTcount: A:0.70, C:0.02, G:0.00, T:0.28
Consensus pattern (7 bp):
AAAAATT
Found at i:53981731 original size:27 final size:27
Alignment explanation
Indices: 53981691--53981756 Score: 98
Period size: 27 Copynumber: 2.4 Consensus size: 27
53981681 AATTTTCCAT
*
53981691 AACACACCAGTATAAT-ATAGCCTCCCA
1 AACACACCAATAT-ATCATAGCCTCCCA
*
53981718 AACACACCAATATATCATATCCTCCCA
1 AACACACCAATATATCATAGCCTCCCA
53981745 AACACACCAATA
1 AACACACCAATA
53981757 AGGCATTAAA
Statistics
Matches: 36, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
26 2 0.06
27 34 0.94
ACGTcount: A:0.44, C:0.35, G:0.03, T:0.18
Consensus pattern (27 bp):
AACACACCAATATATCATAGCCTCCCA
Found at i:53982249 original size:12 final size:12
Alignment explanation
Indices: 53982209--53982251 Score: 50
Period size: 12 Copynumber: 3.5 Consensus size: 12
53982199 TAATAACATT
*
53982209 TTAAATTATTAA
1 TTAAATAATTAA
* *
53982221 TTACAGAATTAA
1 TTAAATAATTAA
53982233 TTTAAATAATTAA
1 -TTAAATAATTAA
53982246 TTAAAT
1 TTAAAT
53982252 TTCTACTCAA
Statistics
Matches: 25, Mismatches: 5, Indels: 2
0.78 0.16 0.06
Matches are distributed among these distances:
12 15 0.60
13 10 0.40
ACGTcount: A:0.51, C:0.02, G:0.02, T:0.44
Consensus pattern (12 bp):
TTAAATAATTAA
Found at i:53982586 original size:15 final size:15
Alignment explanation
Indices: 53982566--53982595 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
53982556 TTAATTTCAT
*
53982566 CAAAACCTTGTTTTA
1 CAAAACCTTATTTTA
53982581 CAAAACCTTATTTTA
1 CAAAACCTTATTTTA
53982596 AGACTTCTAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.37, C:0.20, G:0.03, T:0.40
Consensus pattern (15 bp):
CAAAACCTTATTTTA
Found at i:53982805 original size:19 final size:19
Alignment explanation
Indices: 53982781--53982817 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
53982771 TTACTTTCGT
*
53982781 TTTATTCTATTTACTTTAA
1 TTTATTCTATTTAATTTAA
*
53982800 TTTATTTTATTTAATTTA
1 TTTATTCTATTTAATTTA
53982818 TTTGTTTTAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.27, C:0.05, G:0.00, T:0.68
Consensus pattern (19 bp):
TTTATTCTATTTAATTTAA
Found at i:53982826 original size:14 final size:14
Alignment explanation
Indices: 53982790--53982820 Score: 53
Period size: 14 Copynumber: 2.1 Consensus size: 14
53982780 TTTTATTCTA
53982790 TTTACTTTAATTTAT
1 TTTA-TTTAATTTAT
53982805 TTTATTTAATTTAT
1 TTTATTTAATTTAT
53982819 TT
1 TT
53982821 GTTTTATATT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 12 0.75
15 4 0.25
ACGTcount: A:0.26, C:0.03, G:0.00, T:0.71
Consensus pattern (14 bp):
TTTATTTAATTTAT
Found at i:53983306 original size:15 final size:14
Alignment explanation
Indices: 53983280--53983333 Score: 56
Period size: 15 Copynumber: 3.6 Consensus size: 14
53983270 TTATATTTTA
53983280 ATTATCATAAATTCAT
1 ATTAT-ATAAATT-AT
53983296 ATTATATAAATTAT
1 ATTATATAAATTAT
*
53983310 ATTTATATATCATTA-
1 A-TTATATA-AATTAT
53983325 ATTATATAA
1 ATTATATAA
53983334 TTTAAAACAA
Statistics
Matches: 34, Mismatches: 2, Indels: 7
0.79 0.05 0.16
Matches are distributed among these distances:
14 10 0.29
15 15 0.44
16 9 0.26
ACGTcount: A:0.46, C:0.06, G:0.00, T:0.48
Consensus pattern (14 bp):
ATTATATAAATTAT
Found at i:53991283 original size:5 final size:5
Alignment explanation
Indices: 53991273--53991302 Score: 60
Period size: 5 Copynumber: 6.0 Consensus size: 5
53991263 AAAACCAACA
53991273 ACAAT ACAAT ACAAT ACAAT ACAAT ACAAT
1 ACAAT ACAAT ACAAT ACAAT ACAAT ACAAT
53991303 CCTGGGTGGA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 25 1.00
ACGTcount: A:0.60, C:0.20, G:0.00, T:0.20
Consensus pattern (5 bp):
ACAAT
Found at i:54003163 original size:18 final size:19
Alignment explanation
Indices: 54003125--54003172 Score: 62
Period size: 18 Copynumber: 2.6 Consensus size: 19
54003115 TAAATTTTGA
54003125 CAAAATCAAATTTAAAAAT
1 CAAAATCAAATTTAAAAAT
**
54003144 CAAAAT-AAATTTAATTAT
1 CAAAATCAAATTTAAAAAT
*
54003162 CAAATTCAAAT
1 CAAAATCAAAT
54003173 ACCAAAACAA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
18 15 0.60
19 10 0.40
ACGTcount: A:0.58, C:0.10, G:0.00, T:0.31
Consensus pattern (19 bp):
CAAAATCAAATTTAAAAAT
Found at i:54010785 original size:13 final size:13
Alignment explanation
Indices: 54010767--54010806 Score: 55
Period size: 13 Copynumber: 3.0 Consensus size: 13
54010757 GTTTTATGGT
54010767 TCATAAAATTGTC
1 TCATAAAATTGTC
54010780 TCATAAAAATTGT-
1 TCAT-AAAATTGTC
54010793 TCAATAAAATTGTC
1 TC-ATAAAATTGTC
54010807 ACTACTAGTA
Statistics
Matches: 24, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
13 14 0.58
14 10 0.42
ACGTcount: A:0.42, C:0.12, G:0.07, T:0.38
Consensus pattern (13 bp):
TCATAAAATTGTC
Found at i:54013148 original size:26 final size:25
Alignment explanation
Indices: 54013108--54013158 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 25
54013098 TAAATAAAAA
*
54013108 ATTTAAAAAATATAATAAATCAAATAT
1 ATTTAAAAAACATAA-AAA-CAAATAT
54013135 ATTT-AAAAACATAAAAACAAATAT
1 ATTTAAAAAACATAAAAACAAATAT
54013159 TAAAATAAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
24 7 0.30
25 3 0.13
26 9 0.39
27 4 0.17
ACGTcount: A:0.65, C:0.06, G:0.00, T:0.29
Consensus pattern (25 bp):
ATTTAAAAAACATAAAAACAAATAT
Found at i:54013178 original size:21 final size:21
Alignment explanation
Indices: 54013121--54013184 Score: 53
Period size: 21 Copynumber: 3.1 Consensus size: 21
54013111 TAAAAAATAT
*
54013121 AATAAAT-CAAAT-ATATTTAA
1 AATAAATAAAAATAATA-TTAA
* *
54013141 AA-ACATAAAAACAAATATTAA
1 AATAAATAAAAA-TAATATTAA
*
54013162 AATAAATAAAAATAATACTAA
1 AATAAATAAAAATAATATTAA
54013183 AA
1 AA
54013185 CAATTCTTAA
Statistics
Matches: 34, Mismatches: 6, Indels: 7
0.72 0.13 0.15
Matches are distributed among these distances:
19 3 0.09
20 5 0.15
21 15 0.44
22 11 0.32
ACGTcount: A:0.69, C:0.06, G:0.00, T:0.25
Consensus pattern (21 bp):
AATAAATAAAAATAATATTAA
Found at i:54013264 original size:15 final size:16
Alignment explanation
Indices: 54013234--54013266 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
54013224 AAATATTTAT
54013234 ATTAAAAATTTAAAATA
1 ATTAAAAA-TTAAAATA
54013251 ATTAAAAA-TAAAATA
1 ATTAAAAATTAAAATA
54013266 A
1 A
54013267 AAAATATATA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 8 0.50
17 8 0.50
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (16 bp):
ATTAAAAATTAAAATA
Found at i:54013779 original size:9 final size:10
Alignment explanation
Indices: 54013767--54013817 Score: 52
Period size: 9 Copynumber: 5.0 Consensus size: 10
54013757 ATAAAATCGC
54013767 AAAAATAT-T
1 AAAAATATAT
54013776 AAAAATATAT
1 AAAAATATAT
*
54013786 AGAAAATACTCAA
1 A-AAAATA-T-AT
54013799 AAAAAT-TAT
1 AAAAATATAT
54013808 AAAAATATAT
1 AAAAATATAT
54013818 TTAAAATTTG
Statistics
Matches: 35, Mismatches: 2, Indels: 9
0.76 0.04 0.20
Matches are distributed among these distances:
9 15 0.43
10 6 0.17
11 6 0.17
12 6 0.17
13 2 0.06
ACGTcount: A:0.67, C:0.04, G:0.02, T:0.27
Consensus pattern (10 bp):
AAAAATATAT
Found at i:54014614 original size:24 final size:23
Alignment explanation
Indices: 54014587--54014635 Score: 62
Period size: 24 Copynumber: 2.1 Consensus size: 23
54014577 AATAAGTTTG
* *
54014587 AATTTTTATATTTTAATTCTTTTA
1 AATTTATATATTTTAAAT-TTTTA
*
54014611 AATTTATATTTTTTAAATTTTTA
1 AATTTATATATTTTAAATTTTTA
54014634 AA
1 AA
54014636 ATCATGAATA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
23 7 0.32
24 15 0.68
ACGTcount: A:0.35, C:0.02, G:0.00, T:0.63
Consensus pattern (23 bp):
AATTTATATATTTTAAATTTTTA
Found at i:54014857 original size:32 final size:32
Alignment explanation
Indices: 54014798--54014858 Score: 88
Period size: 32 Copynumber: 1.9 Consensus size: 32
54014788 TTGAGTAACA
*
54014798 AAAATTGACAACTTATTTAATGAGAGTGATTT
1 AAAATTGACAACTTATTTAAAGAGAGTGATTT
*
54014830 AAAATTGATAACTTATTTAACAG-GAGTGA
1 AAAATTGACAACTTATTTAA-AGAGAGTGA
54014859 AAAAATAATA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
32 25 0.96
33 1 0.04
ACGTcount: A:0.43, C:0.07, G:0.16, T:0.34
Consensus pattern (32 bp):
AAAATTGACAACTTATTTAAAGAGAGTGATTT
Found at i:54017673 original size:30 final size:30
Alignment explanation
Indices: 54017637--54017695 Score: 118
Period size: 30 Copynumber: 2.0 Consensus size: 30
54017627 ATCTCATTTA
54017637 CCTATTTTGTTTCTTCCATTAGAAAATAGG
1 CCTATTTTGTTTCTTCCATTAGAAAATAGG
54017667 CCTATTTTGTTTCTTCCATTAGAAAATAG
1 CCTATTTTGTTTCTTCCATTAGAAAATAG
54017696 ACATAATAAT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.27, C:0.17, G:0.12, T:0.44
Consensus pattern (30 bp):
CCTATTTTGTTTCTTCCATTAGAAAATAGG
Found at i:54059484 original size:27 final size:27
Alignment explanation
Indices: 54059454--54059513 Score: 70
Period size: 26 Copynumber: 2.3 Consensus size: 27
54059444 TTGTTGTAAT
54059454 ATTAAATTATATTTT-AATAAAATAAAA
1 ATTAAATTATATTTTGAA-AAAATAAAA
* **
54059481 ATTAAA-TATTTTTTGAAAGTATAAAA
1 ATTAAATTATATTTTGAAAAAATAAAA
54059507 ATTAAAT
1 ATTAAAT
54059514 ATTTTAAACT
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
26 20 0.71
27 8 0.29
ACGTcount: A:0.55, C:0.00, G:0.03, T:0.42
Consensus pattern (27 bp):
ATTAAATTATATTTTGAAAAAATAAAA
Found at i:54059492 original size:24 final size:26
Alignment explanation
Indices: 54059462--54059520 Score: 79
Period size: 26 Copynumber: 2.3 Consensus size: 26
54059452 ATATTAAATT
54059462 ATATTTTAAT-AAA-ATAAAAATTAA
1 ATATTTTAATGAAAGATAAAAATTAA
*
54059486 ATATTTT-TTGAAAGTATAAAAATTAA
1 ATATTTTAATGAAAG-ATAAAAATTAA
54059512 ATATTTTAA
1 ATATTTTAA
54059521 ACTTATATTT
Statistics
Matches: 29, Mismatches: 2, Indels: 5
0.81 0.06 0.14
Matches are distributed among these distances:
23 1 0.03
24 10 0.34
26 18 0.62
ACGTcount: A:0.54, C:0.00, G:0.03, T:0.42
Consensus pattern (26 bp):
ATATTTTAATGAAAGATAAAAATTAA
Found at i:54061368 original size:36 final size:37
Alignment explanation
Indices: 54061307--54061455 Score: 221
Period size: 36 Copynumber: 4.1 Consensus size: 37
54061297 ATAATTGCTG
*
54061307 AAGTGATAAACTGTTTTAAATCTCATTTTCCTCTTGT
1 AAGTGATAAACTGTTTTAAATCTCATTTTCCTCTTAT
*
54061344 AAGTGATAAACTG-TTTAAATCTCATTTTCCTCATAT
1 AAGTGATAAACTGTTTTAAATCTCATTTTCCTCTTAT
54061380 AAGTGATAAACTG-TTTAAATCTCATTTTCCTCTTAT
1 AAGTGATAAACTGTTTTAAATCTCATTTTCCTCTTAT
** * * *
54061416 AAGTGATATGCTGTTTTACATTTCATTTTCCTCTCAT
1 AAGTGATAAACTGTTTTAAATCTCATTTTCCTCTTAT
54061453 AAG
1 AAG
54061456 CATCCTGAGC
Statistics
Matches: 103, Mismatches: 8, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
36 67 0.65
37 36 0.35
ACGTcount: A:0.29, C:0.17, G:0.10, T:0.44
Consensus pattern (37 bp):
AAGTGATAAACTGTTTTAAATCTCATTTTCCTCTTAT
Found at i:54063980 original size:5 final size:5
Alignment explanation
Indices: 54063972--54064022 Score: 93
Period size: 5 Copynumber: 10.2 Consensus size: 5
54063962 TATTAAAAGC
*
54063972 CATCT CATCT CATCT CATCT CATCT CATCT CATCT CATCT GATCT CATCT
1 CATCT CATCT CATCT CATCT CATCT CATCT CATCT CATCT CATCT CATCT
54064022 C
1 C
54064023 TCCCTCCAAT
Statistics
Matches: 44, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
5 44 1.00
ACGTcount: A:0.20, C:0.39, G:0.02, T:0.39
Consensus pattern (5 bp):
CATCT
Found at i:54066120 original size:2 final size:2
Alignment explanation
Indices: 54066113--54066178 Score: 69
Period size: 2 Copynumber: 33.0 Consensus size: 2
54066103 TCAACTCATA
* * * *
54066113 TC TC TC TC TC TT TC TC TC TC TC TC CC TC TC CC TC TC CC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
* * *
54066155 TC TC TC CC CC TC TC TC TC TA TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC
54066179 CACTTAACCC
Statistics
Matches: 52, Mismatches: 12, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
2 52 1.00
ACGTcount: A:0.02, C:0.55, G:0.00, T:0.44
Consensus pattern (2 bp):
TC
Found at i:54066128 original size:12 final size:12
Alignment explanation
Indices: 54066114--54066172 Score: 82
Period size: 12 Copynumber: 4.9 Consensus size: 12
54066104 CAACTCATAT
**
54066114 CTCTCTCTCTTT
1 CTCTCTCTCTCC
54066126 CTCTCTCTCTCC
1 CTCTCTCTCTCC
*
54066138 CTCTCCCTCTCC
1 CTCTCTCTCTCC
54066150 CTCTCTCTCTCC
1 CTCTCTCTCTCC
*
54066162 CCCTCTCTCTC
1 CTCTCTCTCTC
54066173 TATCTCCACT
Statistics
Matches: 42, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
12 42 1.00
ACGTcount: A:0.00, C:0.58, G:0.00, T:0.42
Consensus pattern (12 bp):
CTCTCTCTCTCC
Found at i:54066260 original size:10 final size:10
Alignment explanation
Indices: 54066247--54066394 Score: 119
Period size: 10 Copynumber: 14.7 Consensus size: 10
54066237 CTCAACTCAT
54066247 CTCTCTCTCC
1 CTCTCTCTCC
54066257 CTCTCTCTCTC
1 CTCTCTCTC-C
54066268 C-CTCTC-CC
1 CTCTCTCTCC
54066276 C-CTCTCT-C
1 CTCTCTCTCC
*
54066284 CTCTCTCTTC
1 CTCTCTCTCC
54066294 CTCTCTCTCC
1 CTCTCTCTCC
*
54066304 C-CATTTCTCC
1 CTC-TCTCTCC
*
54066314 CTCTCTCTCT
1 CTCTCTCTCC
*
54066324 CTCCCTCTCCC
1 CTCTCTCT-CC
54066335 TCTCACTCTCTCC
1 -CT--CTCTCTCC
*
54066348 CTCTCTATCC
1 CTCTCTCTCC
*
54066358 CTCTCTCTTTC
1 CTCTCTC-TCC
54066369 CTC-CTCTCC
1 CTCTCTCTCC
* *
54066378 CTCTCTCACT
1 CTCTCTCTCC
54066388 CTCTCTC
1 CTCTCTC
54066395 CCCCATCTGT
Statistics
Matches: 113, Mismatches: 13, Indels: 24
0.75 0.09 0.16
Matches are distributed among these distances:
8 9 0.08
9 13 0.12
10 71 0.63
11 9 0.08
12 4 0.04
13 2 0.02
14 5 0.04
ACGTcount: A:0.03, C:0.57, G:0.00, T:0.41
Consensus pattern (10 bp):
CTCTCTCTCC
Found at i:54066409 original size:2 final size:2
Alignment explanation
Indices: 54066246--54066394 Score: 103
Period size: 2 Copynumber: 77.0 Consensus size: 2
54066236 TCTCAACTCA
* * * *
54066246 TC TC TC TC TC CC TC TC TC TC TC CC TC TC CC CC TC TC TC -C TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
* * *
54066287 TC TC T- TC -C TC TC TC TC -C CC ATT TC TC CC TC TC TC TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC -TC TC TC TC TC TC TC TC TC TC
* * * * * * *
54066327 CC TC TC CC TC TC AC TC TC TC CC TC TC TA TC CC TC TC TC TT TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
* *
54066369 -C TC -C TC TC CC TC TC TC AC TC TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC
54066395 CCCCATCTGT
Statistics
Matches: 111, Mismatches: 29, Indels: 14
0.72 0.19 0.09
Matches are distributed among these distances:
1 6 0.05
2 105 0.95
ACGTcount: A:0.03, C:0.56, G:0.00, T:0.41
Consensus pattern (2 bp):
TC
Found at i:54066607 original size:12 final size:12
Alignment explanation
Indices: 54066590--54066915 Score: 105
Period size: 12 Copynumber: 27.3 Consensus size: 12
54066580 TCAACTCATA
54066590 TCTCTCCCTCCC
1 TCTCTCCCTCCC
*
54066602 TATCTCCCT--C
1 TCTCTCCCTCCC
54066612 T-T-T-C-TCCC
1 TCTCTCCCTCCC
*
54066620 TATCTCCCTCTCTC
1 TCTCTCCCTC-C-C
54066634 TCTCTCCCTCTCTC
1 TCTCTCCCTC-C-C
*
54066648 TCTCTCTCTCCC
1 TCTCTCCCTCCC
54066660 TC-CTTCCCTCCC
1 TCTC-TCCCTCCC
* *
54066672 TCCCTCCCTCCT
1 TCTCTCCCTCCC
54066684 TCTCTCCCTCCC
1 TCTCTCCCTCCC
* *
54066696 TC-CTTACC-CCA
1 TCTC-TCCCTCCC
*
54066707 TCTCCCCCTTCTCTC
1 TCTCTCCC-TC-C-C
54066722 TCTCTCCCTCCC
1 TCTCTCCCTCCC
* *
54066734 CCATTTCCC-CCC
1 TC-TCTCCCTCCC
54066746 TCTCTCCCT--C
1 TCTCTCCCTCCC
*
54066756 T-TC-CTCTCCC
1 TCTCTCCCTCCC
54066766 TC-CATCCCTCCC
1 TCTC-TCCCTCCC
* *
54066778 TCTCTCTCTCTC
1 TCTCTCCCTCCC
** *
54066790 TCTCTCTATCTC
1 TCTCTCCCTCCC
54066802 TCTCTCCCTTTCCC
1 TCTCTCCC--TCCC
54066816 TCTCT--CTCCC
1 TCTCTCCCTCCC
*
54066826 TC-C-CCCTCTC
1 TCTCTCCCTCCC
* * *
54066836 TCTTTCTCTCTC
1 TCTCTCCCTCCC
* * *
54066848 TCTTTTCTTCTCTC
1 TC-TCTC-CCTCCC
*
54066862 TCTCTCCCTCTC
1 TCTCTCCCTCCC
*
54066874 TCTCTCCCTTCTTC
1 TCTCTCCC-TC-CC
* *
54066888 TTTCTCTCTCCC
1 TCTCTCCCTCCC
* *
54066900 TCTCTCTCTCTC
1 TCTCTCCCTCCC
54066912 TCTC
1 TCTC
54066916 AAATCTCTTT
Statistics
Matches: 245, Mismatches: 35, Indels: 68
0.70 0.10 0.20
Matches are distributed among these distances:
6 1 0.00
7 1 0.00
8 6 0.02
9 5 0.02
10 20 0.08
11 14 0.06
12 119 0.49
13 22 0.09
14 50 0.20
15 7 0.03
ACGTcount: A:0.02, C:0.56, G:0.00, T:0.41
Consensus pattern (12 bp):
TCTCTCCCTCCC
Found at i:54066618 original size:18 final size:18
Alignment explanation
Indices: 54066591--54066915 Score: 87
Period size: 18 Copynumber: 18.5 Consensus size: 18
54066581 CAACTCATAT
*
54066591 CTCTCCCTCCCTATCTCC
1 CTCTCTCTCCCTATCTCC
*
54066609 CTCTTTCTCCCTATCTCC
1 CTCTCTCTCCCTATCTCC
54066627 CTCTCTCT--C--TCTCC
1 CTCTCTCTCCCTATCTCC
* *
54066641 CTCTCTCTCTCTCTCTCC
1 CTCTCTCTCCCTATCTCC
**
54066659 CTC-CT-TCCCTCCCTCC
1 CTCTCTCTCCCTATCTCC
* *
54066675 CTC-C-CTCCTTCTCTCC
1 CTCTCTCTCCCTATCTCC
* *
54066691 CTCCCTCCTTACCCCATCTCC
1 CTCTCT-C-T-CCCTATCTCC
* * *
54066712 CCCT-TCTCTCTCTCTCC
1 CTCTCTCTCCCTATCTCC
* *
54066729 CTC-C-C-CCATTTC-CC
1 CTCTCTCTCCCTATCTCC
* *
54066743 CCCTCTCTCCC--TCTTC
1 CTCTCTCTCCCTATCTCC
* * **
54066759 CTCTCCCTCCATCCCTCC
1 CTCTCTCTCCCTATCTCC
* *
54066777 CTCTCTCTCTCTCTCTCTCTAT
1 CTCTCTCTC-C-CTATCTC--C
54066799 CTCTCTCTCCCT-T-TCC
1 CTCTCTCTCCCTATCTCC
*
54066815 CTCTCTCTCCC--TCCCC
1 CTCTCTCTCCCTATCTCC
** *
54066831 CTCTCTCTTTCTCTCTCTC
1 CTCTCTCTCCCTATCTC-C
* * * *
54066850 TTTTCTTCTCTCTCTCTCCC
1 CTCTC-TCTCCCTATCT-CC
*
54066870 TCTCTCTCTCCCT-TCTTCT
1 -CTCTCTCTCCCTATC-TCC
* * *
54066889 TTCTCTCTCCCTCTCTCT
1 CTCTCTCTCCCTATCTCC
54066907 CTCTCTCTC
1 CTCTCTCTC
54066916 AAATCTCTTT
Statistics
Matches: 232, Mismatches: 45, Indels: 60
0.69 0.13 0.18
Matches are distributed among these distances:
14 17 0.07
15 8 0.03
16 60 0.26
17 14 0.06
18 70 0.30
19 13 0.06
20 27 0.12
21 14 0.06
22 9 0.04
ACGTcount: A:0.02, C:0.57, G:0.00, T:0.41
Consensus pattern (18 bp):
CTCTCTCTCCCTATCTCC
Found at i:54066636 original size:4 final size:4
Alignment explanation
Indices: 54066590--54066657 Score: 55
Period size: 4 Copynumber: 17.0 Consensus size: 4
54066580 TCAACTCATA
* * * * * * * *
54066590 TCTC TCCC TCCC TATC TCCC TCTT TCTC CCTA TCTC CCTC TCTC TCTC
1 TCTC TCTC TCTC TCTC TCTC TCTC TCTC TCTC TCTC TCTC TCTC TCTC
*
54066638 TCCC TCTC TCTC TCTC TCTC
1 TCTC TCTC TCTC TCTC TCTC
54066658 CCTCCTTCCC
Statistics
Matches: 48, Mismatches: 16, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
4 48 1.00
ACGTcount: A:0.03, C:0.54, G:0.00, T:0.43
Consensus pattern (4 bp):
TCTC
Found at i:54066646 original size:16 final size:16
Alignment explanation
Indices: 54066622--54066913 Score: 167
Period size: 16 Copynumber: 18.2 Consensus size: 16
54066612 TTTCTCCCTA
54066622 TCTCCCTCTCTCTCTC
1 TCTCCCTCTCTCTCTC
54066638 TC-CCTCTCTCTCTCTC
1 TCTCC-CTCTCTCTCTC
*
54066654 TCTCCCTC-CTTCCCTC
1 TCTCCCTCTC-TCTCTC
* *
54066670 CCTCCCTCCCTC-CTTC
1 TCTCCCTCTCTCTC-TC
* *
54066686 TCTCCCTCCCTCCTTACCCC
1 TCTCCCTCTCT-C-T--CTC
*
54066706 ATCTCCCCCTTCTCTCTC
1 -TCTCCCTC-TCTCTCTC
* *
54066724 TCTCCCTC-C-CCCATT
1 TCTCCCTCTCTCTC-TC
* *
54066739 TC-CCCCCTCTCTCCC
1 TCTCCCTCTCTCTCTC
* *
54066754 TCTTCCTCTCCCTCCATC
1 TCTCCCTCTCTCT-C-TC
*
54066772 CCTCCCTCTCTCTCTC
1 TCTCCCTCTCTCTCTC
* *
54066788 TCTCTCTCTATCTCTC
1 TCTCCCTCTCTCTCTC
* *
54066804 TCTCCCTTTCCCTCTC
1 TCTCCCTCTCTCTCTC
*
54066820 TCTCCCTC-C-CCCTC
1 TCTCCCTCTCTCTCTC
**
54066834 TCTCTTTCTCTCTCTC
1 TCTCCCTCTCTCTCTC
**
54066850 T-TTTCT-TCTCTCTC
1 TCTCCCTCTCTCTCTC
54066864 TCTCCCTCTCTCTCTC
1 TCTCCCTCTCTCTCTC
* * *
54066880 CCT-TCT-TCTTTCTC
1 TCTCCCTCTCTCTCTC
54066894 TCTCCCTCTCTCTCTC
1 TCTCCCTCTCTCTCTC
54066910 TCTC
1 TCTC
54066914 TCAAATCTCT
Statistics
Matches: 209, Mismatches: 43, Indels: 48
0.70 0.14 0.16
Matches are distributed among these distances:
14 34 0.16
15 23 0.11
16 113 0.54
17 13 0.06
18 13 0.06
20 2 0.01
21 9 0.04
22 2 0.01
ACGTcount: A:0.02, C:0.57, G:0.00, T:0.41
Consensus pattern (16 bp):
TCTCCCTCTCTCTCTC
Found at i:54066662 original size:4 final size:4
Alignment explanation
Indices: 54066623--54066698 Score: 62
Period size: 4 Copynumber: 18.0 Consensus size: 4
54066613 TTCTCCCTAT
* * * *
54066623 CTCC CTCTC TCTCT CTCC CTCTC TCTCT CTCT CTCC CTCC TTCC CTCC
1 CTCC CTC-C -CTCC CTCC CTC-C -CTCC CTCC CTCC CTCC CTCC CTCC
* *
54066671 CTCC CTCC CTCC TTCT CTCC CTCC CTCC
1 CTCC CTCC CTCC CTCC CTCC CTCC CTCC
54066699 TTACCCCATC
Statistics
Matches: 58, Mismatches: 10, Indels: 8
0.76 0.13 0.11
Matches are distributed among these distances:
4 50 0.86
5 2 0.03
6 6 0.10
ACGTcount: A:0.00, C:0.63, G:0.00, T:0.37
Consensus pattern (4 bp):
CTCC
Found at i:54066673 original size:30 final size:30
Alignment explanation
Indices: 54066590--54066915 Score: 114
Period size: 30 Copynumber: 10.2 Consensus size: 30
54066580 TCAACTCATA
* ** * *
54066590 TCTCTCCCTCCCTATCTCCCTCTTTCTCCC
1 TCTCTCCCTCCTTCCCTCCCTCTCTCTCTC
* *
54066620 TATCTCCCTCTCTCTCTCTCCCTCTCTCTCTC
1 TCTCTCCCTC-CT-TCCCTCCCTCTCTCTCTC
54066652 TCTCTCCCTCCTTCCCTCCCTCCCTCCCTCCTTCTC
1 TCTCTCCCTCCTTCCCTCCCT--CT--CT-C-TCTC
* *
54066688 TCCCTCCCTCCTTACCCCATCTCC-CCCTTCTCTC
1 TCTCTCCCTCCTT--CCC-TC-CCTCTC-TCTCTC
54066722 TCTCTCCCTCCCCCATTTCCC-CCCTCTCTC-C-C
1 TCTCTCCCT---CC--TTCCCTCCCTCTCTCTCTC
* * *
54066754 TCT-TCCTCTCCCTCCATCCCTCCCTCTCTC
1 TCTCTCC-CTCCTTCCCTCCCTCTCTCTCTC
* * *
54066784 TCTCTCTCTCTCTATCTCTCTCTCC-CTTTCCCTC
1 TCTCTCCCTC-CT-TC-C-CTC-CCTCTCTCTCTC
*
54066818 TCTCTCCCTCC--CCCT--CTCTCTTTCTC
1 TCTCTCCCTCCTTCCCTCCCTCTCTCTCTC
** * * * *
54066844 TCTCTCTTTTCTTCTCTCTCTCTCCCTCTC
1 TCTCTCCCTCCTTCCCTCCCTCTCTCTCTC
54066874 TCTCTCCCTTCTTCTTTCTCTCTCCCTCTCTCTCTC
1 TCTCTCCC-TC--C-TTC-C-CTCCCTCTCTCTCTC
54066910 TCTCTC
1 TCTCTC
54066916 AAATCTCTTT
Statistics
Matches: 220, Mismatches: 36, Indels: 74
0.67 0.11 0.22
Matches are distributed among these distances:
25 1 0.00
26 14 0.06
27 3 0.01
28 13 0.06
29 4 0.02
30 40 0.18
31 10 0.05
32 34 0.15
33 4 0.02
34 38 0.17
35 8 0.04
36 36 0.16
37 6 0.03
38 3 0.01
39 4 0.02
40 2 0.01
ACGTcount: A:0.02, C:0.56, G:0.00, T:0.41
Consensus pattern (30 bp):
TCTCTCCCTCCTTCCCTCCCTCTCTCTCTC
Found at i:54066761 original size:6 final size:6
Alignment explanation
Indices: 54066717--54066915 Score: 68
Period size: 6 Copynumber: 32.8 Consensus size: 6
54066707 TCTCCCCCTT
* * * *
54066717 CTCTCT CTCTCC CTCCCC CATTTCC C-C-CC TCTCTCC CTCTTC CTCTCC
1 CTCTCC CTCTCC CTCTCC C-TCTCC CTCTCC -CTCTCC CTCTCC CTCTCC
* * * * * *
54066765 CTCCATCC CTC-CC TCTCTCT CTCTCT CTCTCT ATCTCT CTCTCC CTTTCC
1 CT-C-TCC CTCTCC -CTCTCC CTCTCC CTCTCC CTCTCC CTCTCC CTCTCC
* * * * * * * *
54066815 CTCT-- CTCTCC CTCCCC CTCTCT CTTTCT CTCTCTC TTTTCTT CTCTCT
1 CTCTCC CTCTCC CTCTCC CTCTCC CTCTCC CTCTC-C CTCTC-C CTCTCC
* * * * * *
54066863 CTCTCC CTCTCT CTCTCC CT-TCTT CTTTCT CTCTCC CTCTCT CTCTCT
1 CTCTCC CTCTCC CTCTCC CTCTC-C CTCTCC CTCTCC CTCTCC CTCTCC
54066911 CTCTC
1 CTCTC
54066916 AAATCTCTTT
Statistics
Matches: 149, Mismatches: 31, Indels: 26
0.72 0.15 0.13
Matches are distributed among these distances:
4 6 0.04
5 5 0.03
6 115 0.77
7 18 0.12
8 5 0.03
ACGTcount: A:0.02, C:0.55, G:0.00, T:0.44
Consensus pattern (6 bp):
CTCTCC
Found at i:54066784 original size:2 final size:2
Alignment explanation
Indices: 54066777--54066915 Score: 133
Period size: 2 Copynumber: 71.5 Consensus size: 2
54066767 CCATCCCTCC
* * * *
54066777 CT CT CT CT CT CT CT CT CT CT AT CT CT CT CT CC CT TT CC CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
* * * * *
54066819 CT CT CC CT CC CC CT CT CT CT TT CT CT CT CT CT -T TT CT -T CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
* * * *
54066859 CT CT CT CT CC CT CT CT CT CT CC CT -T CT -T CT TT CT CT CT CC
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
54066899 CT CT CT CT CT CT CT CT C
1 CT CT CT CT CT CT CT CT C
54066916 AAATCTCTTT
Statistics
Matches: 110, Mismatches: 23, Indels: 8
0.78 0.16 0.06
Matches are distributed among these distances:
1 4 0.04
2 106 0.96
ACGTcount: A:0.01, C:0.51, G:0.00, T:0.48
Consensus pattern (2 bp):
CT
Found at i:54069489 original size:46 final size:47
Alignment explanation
Indices: 54069424--54069563 Score: 180
Period size: 46 Copynumber: 3.0 Consensus size: 47
54069414 TTATCTTTGA
* * * * *
54069424 CATGATGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTC-TGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACTCATTTTCATAT
54069470 CATGTTGCCATGGTATCTTTCAACCATGGTCTTA-TACA-TTTCATAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACT-CATTTTCATAT
* *
54069516 CACGTTGCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCATAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACTCATTTTCATAT
54069562 CA
1 CA
54069564 GAGAGCACAC
Statistics
Matches: 84, Mismatches: 7, Indels: 6
0.87 0.07 0.06
Matches are distributed among these distances:
45 5 0.06
46 79 0.94
ACGTcount: A:0.23, C:0.24, G:0.14, T:0.40
Consensus pattern (47 bp):
CATGTTGCCATGGTATCTTTCAACCATGGTCTTACTCATTTTCATAT
Found at i:54071740 original size:18 final size:20
Alignment explanation
Indices: 54071725--54071761 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
54071715 TAATAATAAA
*
54071725 ATATCTCATTAAAATAATAT
1 ATATCTAATTAAAATAATAT
54071745 ATATCTAATT-AAATAAT
1 ATATCTAATTAAAATAAT
54071762 CATAAAATAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
19 7 0.44
20 9 0.56
ACGTcount: A:0.51, C:0.08, G:0.00, T:0.41
Consensus pattern (20 bp):
ATATCTAATTAAAATAATAT
Found at i:54074481 original size:46 final size:46
Alignment explanation
Indices: 54074416--54074689 Score: 379
Period size: 46 Copynumber: 6.0 Consensus size: 46
54074406 TTATCTTTGA
* * * *
54074416 CATGATGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTC-TGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACTCA-TTTCATGT
*
54074462 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATGT
* *
54074508 CACGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATGT
* * * * **
54074554 CACGCTGCCATGGTATCTTTCAACCATGGTCTTATTTATTTCCCGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATGT
* *
54074600 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATGT
* *
54074646 CAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCAT
54074690 ATCAGAGAGC
Statistics
Matches: 208, Mismatches: 19, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
45 4 0.02
46 204 0.98
ACGTcount: A:0.20, C:0.24, G:0.15, T:0.41
Consensus pattern (46 bp):
CATGTTGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATGT
Found at i:54074669 original size:138 final size:138
Alignment explanation
Indices: 54074421--54074689 Score: 421
Period size: 138 Copynumber: 1.9 Consensus size: 138
54074411 TTTGACATGA
* * * *
54074421 TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTCTGTCATGTTGCCATGGTATCTTTCAAC
1 TGCCATAGTATCTTTCAACCATGGTCTTACTCATTTCCCGTCATGTTGCCATGGTATCTTTCAAC
** * **
54074486 CATGGTCTTATTCATTTCATGTCACGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCA
66 CATGGTCTTACACATTTCATATCACGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCA
54074551 TGTCACGC
131 TGTCACGC
* * *
54074559 TGCCATGGTATCTTTCAACCATGGTCTTATTTATTTCCCGTCATGTTGCCATGGTATCTTTCAAC
1 TGCCATAGTATCTTTCAACCATGGTCTTACTCATTTCCCGTCATGTTGCCATGGTATCTTTCAAC
*
54074624 CATGGTCTTACACATTTCATATCAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCA
66 CATGGTCTTACACATTTCATATCACGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCA
54074689 T
131 T
54074690 ATCAGAGAGC
Statistics
Matches: 118, Mismatches: 13, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
138 118 1.00
ACGTcount: A:0.20, C:0.24, G:0.15, T:0.41
Consensus pattern (138 bp):
TGCCATAGTATCTTTCAACCATGGTCTTACTCATTTCCCGTCATGTTGCCATGGTATCTTTCAAC
CATGGTCTTACACATTTCATATCACGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCA
TGTCACGC
Found at i:54079081 original size:367 final size:367
Alignment explanation
Indices: 54078408--54079141 Score: 1468
Period size: 367 Copynumber: 2.0 Consensus size: 367
54078398 TTGAATAAAA
54078408 TTAAAATTTTATGGGTAATTTTGTAGAAATGTTAAAAATGACCAATTTGCATGAAATGGATTATT
1 TTAAAATTTTATGGGTAATTTTGTAGAAATGTTAAAAATGACCAATTTGCATGAAATGGATTATT
54078473 TTATTATTTGAAACTACAAAATTGAATGAAATTATTAGTTTAGTTCGAGATCGGGGAAAAATATG
66 TTATTATTTGAAACTACAAAATTGAATGAAATTATTAGTTTAGTTCGAGATCGGGGAAAAATATG
54078538 TTTTAAGGATTAAATTGAAAAGTGTTGAAATTATGGAAAATTCTGATATTTTATAGAATTCATGG
131 TTTTAAGGATTAAATTGAAAAGTGTTGAAATTATGGAAAATTCTGATATTTTATAGAATTCATGG
54078603 GTTGTTATTAATTTGTATGAGAATAATGGCTGGAAATAAGGATTAAATTGCAAGAATTTTATTTT
196 GTTGTTATTAATTTGTATGAGAATAATGGCTGGAAATAAGGATTAAATTGCAAGAATTTTATTTT
54078668 TGAGCTTAAGGATGAAATCGTCATTAATTAAAAGTTTAGGGGTAAAATGGTAATTTTGTTTAGAG
261 TGAGCTTAAGGATGAAATCGTCATTAATTAAAAGTTTAGGGGTAAAATGGTAATTTTGTTTAGAG
54078733 GATTCATTGAATGTATTAGAACATGAAATAAATGAAAACGAC
326 GATTCATTGAATGTATTAGAACATGAAATAAATGAAAACGAC
54078775 TTAAAATTTTATGGGTAATTTTGTAGAAATGTTAAAAATGACCAATTTGCATGAAATGGATTATT
1 TTAAAATTTTATGGGTAATTTTGTAGAAATGTTAAAAATGACCAATTTGCATGAAATGGATTATT
54078840 TTATTATTTGAAACTACAAAATTGAATGAAATTATTAGTTTAGTTCGAGATCGGGGAAAAATATG
66 TTATTATTTGAAACTACAAAATTGAATGAAATTATTAGTTTAGTTCGAGATCGGGGAAAAATATG
54078905 TTTTAAGGATTAAATTGAAAAGTGTTGAAATTATGGAAAATTCTGATATTTTATAGAATTCATGG
131 TTTTAAGGATTAAATTGAAAAGTGTTGAAATTATGGAAAATTCTGATATTTTATAGAATTCATGG
54078970 GTTGTTATTAATTTGTATGAGAATAATGGCTGGAAATAAGGATTAAATTGCAAGAATTTTATTTT
196 GTTGTTATTAATTTGTATGAGAATAATGGCTGGAAATAAGGATTAAATTGCAAGAATTTTATTTT
54079035 TGAGCTTAAGGATGAAATCGTCATTAATTAAAAGTTTAGGGGTAAAATGGTAATTTTGTTTAGAG
261 TGAGCTTAAGGATGAAATCGTCATTAATTAAAAGTTTAGGGGTAAAATGGTAATTTTGTTTAGAG
54079100 GATTCATTGAATGTATTAGAACATGAAATAAATGAAAACGAC
326 GATTCATTGAATGTATTAGAACATGAAATAAATGAAAACGAC
54079142 GATCAAATTT
Statistics
Matches: 367, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
367 367 1.00
ACGTcount: A:0.39, C:0.05, G:0.19, T:0.37
Consensus pattern (367 bp):
TTAAAATTTTATGGGTAATTTTGTAGAAATGTTAAAAATGACCAATTTGCATGAAATGGATTATT
TTATTATTTGAAACTACAAAATTGAATGAAATTATTAGTTTAGTTCGAGATCGGGGAAAAATATG
TTTTAAGGATTAAATTGAAAAGTGTTGAAATTATGGAAAATTCTGATATTTTATAGAATTCATGG
GTTGTTATTAATTTGTATGAGAATAATGGCTGGAAATAAGGATTAAATTGCAAGAATTTTATTTT
TGAGCTTAAGGATGAAATCGTCATTAATTAAAAGTTTAGGGGTAAAATGGTAATTTTGTTTAGAG
GATTCATTGAATGTATTAGAACATGAAATAAATGAAAACGAC
Found at i:54079851 original size:406 final size:407
Alignment explanation
Indices: 54079099--54079914 Score: 1571
Period size: 406 Copynumber: 2.0 Consensus size: 407
54079089 TTTGTTTAGA
54079099 GGATTCATTGAATGTATTAGAACATGAAATAAATGAAAACGACGATCAAATTTATTTATAAAGAT
1 GGATTCATTGAATGTATTAGAACATGAAATAAATGAAAACGACGATCAAATTTATTTATAAAGAT
*
54079164 CCGGATGACTCGAATACGAGACTTGAACGTGGAAAAGAAAAGATATCGAATTAATGAAATTATAA
66 CCGGATGACTCGAATACGAGAATTGAACGTGGAAAAGAAAAGATATCGAATTAATGAAATTATAA
*
54079229 ACATGAACAAGCAACGAGGTAAGTTAGTGTAACTTGAATTGTATTTTTAAATGCATGAAATATCG
131 ACATGAACAAACAACGAGGTAAGTTAGTGTAACTTGAATTGTATTTTTAAATGCATGAAATATCG
54079294 ATATAATGAATTACCTGATTTATGTTTATGAAGAAATGACAAGAGAATGATATTTATCATGACAT
196 ATATAATGAATTACCTGATTTATGTTTATGAAGAAATGACAAGAGAATGATATTTATCATGACAT
54079359 GTAAATATGTGATTATCTTTGATACGTTAATACAAGGAAATTAAGTATATTGAGACGAGTAATAA
261 GTAAATATGTGATTATCTTTGATACGTTAATACAAGGAAATTAAGTATATTGAGACGAGTAATAA
*
54079424 ATTCAAGTAAAACATGTCGAG-AAAAATAAGTACGTTTAAGGGACAATATGTTTGATTTTAATTG
326 ATTCAAGTAAAACATGTCGAGAAAAAACAAGTACGTTTAAGGGACAATATGTTTGATTTTAATTG
54079488 GTTCCAAATATGAACGT
391 GTTCCAAATATGAACGT
54079505 GGATTCATTGAATGTATTAGAACATGAAATAAATGAAAACGACGATCAAATTTATTTATAAAGAT
1 GGATTCATTGAATGTATTAGAACATGAAATAAATGAAAACGACGATCAAATTTATTTATAAAGAT
54079570 CCGGATGACTCGAATACGAGAATTGAACGTGGAAAAGAAAAGATATCGAATTAATGAAATTATAA
66 CCGGATGACTCGAATACGAGAATTGAACGTGGAAAAGAAAAGATATCGAATTAATGAAATTATAA
54079635 ACATGAACAAACAACGAGGTAAGTTAGTGTAACTTGAATTGTATTTTTAAATGCATGAAATATCG
131 ACATGAACAAACAACGAGGTAAGTTAGTGTAACTTGAATTGTATTTTTAAATGCATGAAATATCG
54079700 ATATAATGAATTACCTGATTTATGTTTATGAAGAAATGACAAGAGAATGATATTTATCATGACAT
196 ATATAATGAATTACCTGATTTATGTTTATGAAGAAATGACAAGAGAATGATATTTATCATGACAT
54079765 GTAAATATGTGATTATCTTTGATACGTTAATACAAGGAAATTAAGTATATTGAGACGAGTAATAA
261 GTAAATATGTGATTATCTTTGATACGTTAATACAAGGAAATTAAGTATATTGAGACGAGTAATAA
54079830 ATTCAAGTAAAACATGTCGAGAAAAAAAAACAAGTACGTTTAAGGGACAATATGTTTGATTTTAA
326 ATTCAAGTAAAACATGTCGAG---AAAAAACAAGTACGTTTAAGGGACAATATGTTTGATTTTAA
54079895 TTGGTTCCAAATATGAACGT
388 TTGGTTCCAAATATGAACGT
54079915 TAAATGAAAT
Statistics
Matches: 403, Mismatches: 3, Indels: 4
0.98 0.01 0.01
Matches are distributed among these distances:
406 344 0.85
410 59 0.15
ACGTcount: A:0.42, C:0.09, G:0.18, T:0.31
Consensus pattern (407 bp):
GGATTCATTGAATGTATTAGAACATGAAATAAATGAAAACGACGATCAAATTTATTTATAAAGAT
CCGGATGACTCGAATACGAGAATTGAACGTGGAAAAGAAAAGATATCGAATTAATGAAATTATAA
ACATGAACAAACAACGAGGTAAGTTAGTGTAACTTGAATTGTATTTTTAAATGCATGAAATATCG
ATATAATGAATTACCTGATTTATGTTTATGAAGAAATGACAAGAGAATGATATTTATCATGACAT
GTAAATATGTGATTATCTTTGATACGTTAATACAAGGAAATTAAGTATATTGAGACGAGTAATAA
ATTCAAGTAAAACATGTCGAGAAAAAACAAGTACGTTTAAGGGACAATATGTTTGATTTTAATTG
GTTCCAAATATGAACGT
Found at i:54088481 original size:30 final size:30
Alignment explanation
Indices: 54088446--54088505 Score: 120
Period size: 30 Copynumber: 2.0 Consensus size: 30
54088436 CGTGGTGGCC
54088446 GCAGTCCTTGGCCGACATGGTGGTGCACAG
1 GCAGTCCTTGGCCGACATGGTGGTGCACAG
54088476 GCAGTCCTTGGCCGACATGGTGGTGCACAG
1 GCAGTCCTTGGCCGACATGGTGGTGCACAG
54088506 ACGCTGCTTT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.17, C:0.27, G:0.37, T:0.20
Consensus pattern (30 bp):
GCAGTCCTTGGCCGACATGGTGGTGCACAG
Found at i:54091523 original size:35 final size:35
Alignment explanation
Indices: 54091478--54091553 Score: 100
Period size: 35 Copynumber: 2.1 Consensus size: 35
54091468 TATTTTTCAG
* *
54091478 ATTGAATCAAATCTTTAAAAATGAG-TAAACAATTTT
1 ATTG-ATCAAAACTTAAAAAATGAGATAAA-AATTTT
*
54091514 ATTGATCAAAACTTAAAAAATGAGATCAAAATTTT
1 ATTGATCAAAACTTAAAAAATGAGATAAAAATTTT
54091549 ATTGA
1 ATTGA
54091554 GACCCTAAAC
Statistics
Matches: 36, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
35 29 0.81
36 7 0.19
ACGTcount: A:0.49, C:0.08, G:0.09, T:0.34
Consensus pattern (35 bp):
ATTGATCAAAACTTAAAAAATGAGATAAAAATTTT
Found at i:54092879 original size:18 final size:18
Alignment explanation
Indices: 54092839--54092880 Score: 50
Period size: 18 Copynumber: 2.3 Consensus size: 18
54092829 TTAGATTGCT
*
54092839 TTTTAATTTAAAAGACTA
1 TTTTAATTTAAAAGAATA
*
54092857 ATTTAATTTAAAA-AATA
1 TTTTAATTTAAAAGAATA
54092874 CTTTTAA
1 -TTTTAA
54092881 AACACAACAG
Statistics
Matches: 20, Mismatches: 3, Indels: 2
0.80 0.12 0.08
Matches are distributed among these distances:
17 3 0.15
18 17 0.85
ACGTcount: A:0.48, C:0.05, G:0.02, T:0.45
Consensus pattern (18 bp):
TTTTAATTTAAAAGAATA
Found at i:54104310 original size:11 final size:11
Alignment explanation
Indices: 54104276--54104315 Score: 53
Period size: 11 Copynumber: 3.6 Consensus size: 11
54104266 CAATAACAAT
*
54104276 AAAATAGTAAC
1 AAAATAGTAGC
* *
54104287 AACATAATAGC
1 AAAATAGTAGC
54104298 AAAATAGTAGC
1 AAAATAGTAGC
54104309 AAAATAG
1 AAAATAG
54104316 GAAGAAAATA
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
11 24 1.00
ACGTcount: A:0.60, C:0.10, G:0.12, T:0.17
Consensus pattern (11 bp):
AAAATAGTAGC
Found at i:54108108 original size:95 final size:95
Alignment explanation
Indices: 54107928--54108110 Score: 269
Period size: 95 Copynumber: 1.9 Consensus size: 95
54107918 TAGTTTTAAG
* * **
54107928 CCAAGTGAGAAAATAGTTATATATTTTATAATTTAATCAATATGTGAAATTGATAAATGTTGATG
1 CCAAGTGAGAAAATAGTTATATATTTTATAACTTAATCAACATGCCAAATTGATAAATGTTGATG
*
54107993 AAAGATATTTATAATATTAATGATTATAAA
66 AAAGATACTTATAATATTAATGATTATAAA
*
54108023 CCAAGTGAGAAAATAGTTATATATTTTATAACTTAATTAACATGCCAAATTGATAAATGTTGAT-
1 CCAAGTGAGAAAATAGTTATATATTTTATAACTTAATCAACATGCCAAATTGATAAATGTTGATG
* * *
54108087 AGAGAATACTTGTAATCTTAATGA
66 AAAG-ATACTTATAATATTAATGA
54108111 ATGGCTGAGA
Statistics
Matches: 78, Mismatches: 9, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
94 3 0.04
95 75 0.96
ACGTcount: A:0.44, C:0.06, G:0.13, T:0.37
Consensus pattern (95 bp):
CCAAGTGAGAAAATAGTTATATATTTTATAACTTAATCAACATGCCAAATTGATAAATGTTGATG
AAAGATACTTATAATATTAATGATTATAAA
Found at i:54111702 original size:15 final size:15
Alignment explanation
Indices: 54111684--54111715 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
54111674 ATCATTGAAC
54111684 AAGTTCGGATTGATG
1 AAGTTCGGATTGATG
*
54111699 AAGTTTGGATTGATG
1 AAGTTCGGATTGATG
54111714 AA
1 AA
54111716 AATTCAATTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.31, C:0.03, G:0.31, T:0.34
Consensus pattern (15 bp):
AAGTTCGGATTGATG
Found at i:54113538 original size:23 final size:23
Alignment explanation
Indices: 54113505--54113571 Score: 102
Period size: 24 Copynumber: 3.0 Consensus size: 23
54113495 CAGATACGCG
54113505 GATT-TCC-ACCCAAACACACCA
1 GATTGTCCAACCCAAACACACCA
54113526 GATTGTCCAACCCAAACACACCCA
1 GATTGTCCAACCCAAACACA-CCA
*
54113550 GAATGTCCAACCCAAACACACC
1 GATTGTCCAACCCAAACACACC
54113572 CAGAATATTT
Statistics
Matches: 42, Mismatches: 1, Indels: 4
0.89 0.02 0.09
Matches are distributed among these distances:
21 4 0.10
22 3 0.07
23 13 0.31
24 22 0.52
ACGTcount: A:0.39, C:0.42, G:0.07, T:0.12
Consensus pattern (23 bp):
GATTGTCCAACCCAAACACACCA
Found at i:54113556 original size:24 final size:24
Alignment explanation
Indices: 54113512--54113577 Score: 116
Period size: 24 Copynumber: 2.8 Consensus size: 24
54113502 GCGGATTTCC
*
54113512 ACCCAAACACA-CCAGATTGTCCA
1 ACCCAAACACACCCAGAATGTCCA
54113535 ACCCAAACACACCCAGAATGTCCA
1 ACCCAAACACACCCAGAATGTCCA
54113559 ACCCAAACACACCCAGAAT
1 ACCCAAACACACCCAGAAT
54113578 ATTTTAAATC
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
23 11 0.27
24 30 0.73
ACGTcount: A:0.42, C:0.41, G:0.08, T:0.09
Consensus pattern (24 bp):
ACCCAAACACACCCAGAATGTCCA
Found at i:54114560 original size:21 final size:20
Alignment explanation
Indices: 54114536--54114604 Score: 70
Period size: 21 Copynumber: 3.4 Consensus size: 20
54114526 AATACTAATA
*
54114536 ATAATAATCTAATATAAAACC
1 ATAATAAT-TAATATAAAATC
* *
54114557 ATAAT-GTTAAT-TAATAATT
1 ATAATAATTAATATAA-AATC
54114576 ATAATAATTTAATATAAAATC
1 ATAATAA-TTAATATAAAATC
54114597 ATAATAAT
1 ATAATAAT
54114605 AATCATTATA
Statistics
Matches: 39, Mismatches: 5, Indels: 9
0.74 0.09 0.17
Matches are distributed among these distances:
18 3 0.08
19 11 0.28
20 2 0.05
21 20 0.51
22 3 0.08
ACGTcount: A:0.55, C:0.06, G:0.01, T:0.38
Consensus pattern (20 bp):
ATAATAATTAATATAAAATC
Found at i:54117592 original size:791 final size:793
Alignment explanation
Indices: 54115898--54119001 Score: 3850
Period size: 791 Copynumber: 3.9 Consensus size: 793
54115888 TGGTCCTCTT
** *
54115898 CGCTTACAAATATTGCAAATCAAAAATCATATTTCAATGCGAGGAAGGTGCACGAATTGGGTGCG
1 CGCTTACAAATCCTGCAAATCAAAAATCATATTTCAATGCGAGGAAGGTGCACGAATTGGGTGAG
* * *
54115963 TCATCACTGCTTCCAACAAGTGCAAACCCGTTTGGTGGTAGTCCCTGATTGGTTGGAAATCAATA
66 CCATCACTGCTTCCAACAAGTGCAAACCCGTTTGGTGGCAGTCCCTGATTGGTTGGAAATCAATG
** * * *
54116028 GACTTAACGAAAAGAGAGTGGTGCGAATATATTGAAACGAGAGCTTGTTTGGTTGCGGCTAAGGA
131 GACTTAACGAAAAGAGAGCAGTGCGAAGATATCGAAACGAGAGCTTGTTTGGTTACGGCTAAGGA
** * * * *
54116093 AAAAT--GTCGGCTTTGCCAAGGTAAAGTGTACAACGCCGTTTTTAAATGCAAAAATCGCAGTAA
196 AAAATGCGTCGGCTTCACCAAGGTAAAGTGTACAACGCCGTTTTTGAATGCAAGAATCACAGTAG
* * ** * ** *
54116156 GGGAGAAGGAGATAATGAATAAACGGGTTGAGAGGATTATACACGCAGCATCGTTTTCGAAGGAA
261 GGGAGAAGTAGATAATGAATAAACGGGTTGAAAGGATGGTACACGCAACATCGTTACCGAAGAAA
* * * * *
54116221 AGCAAATAGGTATATTTTATCAAGTTGGATTATAT-AGGAGGGTCTAAACCAATGGTGACTAATT
326 AGCAAATAGGTATATCTTATCGAGTCGGATTATATGA-GAGGGTCCAAACCAAGGGTGACTAATT
* * * * * *
54116285 CCAGAGCTAATCAATATTTGGGCTCCGGTTCTCAACTTTAATTGTGAACCTTCACATGGGTCTGG
390 CCAGAGCTAGTCAGTATTTGGGCTCCGGTTCTCAACTTCAAATGTGAACCGTCACATGGGTCTAG
* * *
54116350 AGTTTCAGTCAGTTTTTTTTTAAGCAGTAGCAATTCTAAAGTGGACAATTGTAGGTCTTGTACCA
455 AGTTTCAGTCGGTTTTTTTTTAAGCAGTGGCAATTCTAAAGTGGACAATTGTAGGTGTTGTACCA
* * * *
54116415 CAATTGTAGACAATTTTGGTTTTTTTTTCTTTCGTTCAATATTTT-AGTATCACTTTAGGACCTT
520 CAATTGTGGACAATTGTAGTTTTTTTTTCTTTCGTTCAATATTTTGA-TATCACTCTAGGACCTT
* * * **
54116479 TAATTTTCACTTGAGTTTTTTCTCAGTTGATCTTTTAAAGGCATGGACTGTTCATTACCCCAAAA
584 CAATTTTCACTTGAGTTTTTTCTCAGTCGGTCTTTTAAAGGCATGGACCCTTCATTA-CCCAAAA
* * *
54116544 CCTAGAGGAATATTCCGCTTCTT-G-GACAACTATAAAATTCGAGTGCCCATTCCCATTACTCGG
648 CCTAGAGGAATATTCCGCTTCTTCGTGAC--C-ATAAAATTCGAGCGCCCCTTCCCATTACTCCG
* ** * *
54116607 TGGTCTAATCCCGGCTGGAACTTCGGATGACCCATCATCCGGTCCATACATCCTTACCTTCAAAG
710 TGGTCCAATCCCAACTGAAACTTCGGATGACCCATCATCCAGTCCATACATCCTTACCTTCAAA-
* *
54116672 AA-CTTCCTTTTTGGGTCGC
774 AACCTTCCTTCTTAGGTCGC
* * * *
54116691 CGCTTACAAATCCTGTGAAA-CAAAAATCATGTTTCAATGCGAGGAATGTGCACGAATTGGGTGT
1 CGCTTACAAATCCTG-CAAATCAAAAATCATATTTCAATGCGAGGAAGGTGCACGAATTGGGTGA
* * * *
54116755 GCCATTATTGCTTCCAACAAGTGCAAACCCGCTTAGTGGCAGTCCCTGATTGGTTGGAAATCAAT
65 GCCATCACTGCTTCCAACAAGTGCAAACCCGTTTGGTGGCAGTCCCTGATTGGTTGGAAATCAAT
* * ** *
54116820 GGACTTAACGAAAAGAGAGCAGTGTGAACG-TATCGAAACGAAAGCTTGTTTGGTTGTGGCTAAT
130 GGACTTAACGAAAAGAGAGCAGTGCGAA-GATATCGAAACGAGAGCTTGTTTGGTTACGGCTAAG
* * ** * * * *
54116884 GAAAAATGTGTTGGCTTCACCAAGGTAAAGTGTATGACACCGTTTCTGAATGCGAGAATCATAGT
194 GAAAAATGCGTCGGCTTCACCAAGGTAAAGTGTACAACGCCGTTTTTGAATGCAAGAATCACAGT
* * * *
54116949 GGGGGAGAAGTAGATAATGAATAAACGTGTTGAAAAGATGGTACACGCAACATCGTTACCGTAGA
259 AGGGGAGAAGTAGATAATGAATAAACGGGTTGAAAGGATGGTACACGCAACATCGTTACCGAAGA
* * * * *
54117014 AAAGCAAATGGGTCTATCTTATCGGGTCAGATTATTTGAGAGGGTCCAAACCAAGGGTGACTAAT
324 AAAGCAAATAGGTATATCTTATCGAGTCGGATTATATGAGAGGGTCCAAACCAAGGGTGACTAAT
*
54117079 TCCAGAGCTAGTCAGTATTTGGGCTCCGGTTCTCAACTTCAAATGTGAACCGTCACGTGGGTCTA
389 TCCAGAGCTAGTCAGTATTTGGGCTCCGGTTCTCAACTTCAAATGTGAACCGTCACATGGGTCTA
* * * * * * * *
54117144 AAGTTTTAGTC-GATTTTTTTTAAGCAGTGGCAATTTTAAAATGGAAAATTATGGGTGTTGTACC
454 GAGTTTCAGTCGGTTTTTTTTTAAGCAGTGGCAATTCTAAAGTGGACAATTGTAGGTGTTGTACC
*
54117208 ACAATTGTGGACAATTGTAGTTTTTTTTTCTTTCGTTCAATATTTT-A-ATCACTCTAGAACCTT
519 ACAATTGTGGACAATTGTAGTTTTTTTTTCTTTCGTTCAATATTTTGATATCACTCTAGGACCTT
*
54117271 CAATTTTCACTTGAGTTTTTT-TCAGTCGGTCTTTTAAAGGTATGGACCCTTCATTACCTCAAAA
584 CAATTTTCACTTGAGTTTTTTCTCAGTCGGTCTTTTAAAGGCATGGACCCTTCATTACC-CAAAA
* * *
54117335 -CTTGAAAGAATATTCCGCTTCTTCAGTGACCATAAAATTCGAGCGCCCCTTCCCATTACTCCAT
648 CCTAG-AGGAATATTCCGCTTCTTC-GTGACCATAAAATTCGAGCGCCCCTTCCCATTACTCCGT
* * * *
54117399 AGTCCAATCCCAACTGAAACTTTGAATGACCTATCATCCAGTCCATACATCCTTACCTTCAAAAA
711 GGTCCAATCCCAACTGAAACTTCGGATGACCCATCATCCAGTCCATACATCCTTACCTTCAAAAA
54117464 CCTTCCTTCTTAGGTCGC
776 CCTTCCTTCTTAGGTCGC
* * * * * *
54117482 CGCTTACAAATCCTGCGAATCAAAAATCATACTTCAATACGATGAAGGCGCACAAATTGGGTGAG
1 CGCTTACAAATCCTGCAAATCAAAAATCATATTTCAATGCGAGGAAGGTGCACGAATTGGGTGAG
* * ** *
54117547 TCATCACTGCTTCCAACAAGTTCAAACATGTTTGGTGGTAGTCCCTGATTGGTTGGAAATCAATG
66 CCATCACTGCTTCCAACAAGTGCAAACCCGTTTGGTGGCAGTCCCTGATTGGTTGGAAATCAATG
* * * * *
54117612 GACTTAACGAAAAGAGAGCGGTGCGAAGATATCGAAATGGGAGCTTGTTTGGTTACAGCTAGGGA
131 GACTTAACGAAAAGAGAGCAGTGCGAAGATATCGAAACGAGAGCTTGTTTGGTTACGGCTAAGGA
* * * **
54117677 AAAATACGTCGGCTTCTCCAAGGTAAAGTGTACGACGCTATTTTTGAATGCAAGAAT-ACCAGTA
196 AAAATGCGTCGGCTTCACCAAGGTAAAGTGTACAACGCCGTTTTTGAATGCAAGAATCA-CAGTA
* * * * * *
54117741 GGGGAGAAAG-AGATAATGAATAAACGGGTTGAGAGGATGGCACACGCAACATCATTACAGGAGG
260 GGGGAG-AAGTAGATAATGAATAAACGGGTTGAAAGGATGGTACACGCAACATCGTTACCGAAGA
* * * * *
54117805 AAAGCAAATAGGTCTATCTTATTGGGTCCGATTATATGGGAGGGTCCAAACCAAGGGTGACTAAT
324 AAAGCAAATAGGTATATCTTATCGAGTCGGATTATATGAGAGGGTCCAAACCAAGGGTGACTAAT
* * *
54117870 TCCAGAGCTAGTCAGTATTTAGGTTCTGGTTCTCAACTTCAAATGTGAACCGTCACATGGGTCTA
389 TCCAGAGCTAGTCAGTATTTGGGCTCCGGTTCTCAACTTCAAATGTGAACCGTCACATGGGTCTA
* * *
54117935 GAGTTTCGGTCGGGTTTTTTTTAAGTAGTGGCAATTCTAAAGTGGACAATTGTAGGTGTTGTACC
454 GAGTTTCAGTCGGTTTTTTTTTAAGCAGTGGCAATTCTAAAGTGGACAATTGTAGGTGTTGTACC
* *
54118000 ACAATTGTGGACAATTGTGGTTTTTTTTTTCTTTCGTTCAATATTTTGGTATCACTCTAGGACCT
519 ACAATTGTGGACAATTGTAG-TTTTTTTTTCTTTCGTTCAATATTTTGATATCACTCTAGGACCT
* *
54118065 TCAATTTTCACTTGAGTTTTTTCTCAGTCGGTCTTTTAAAGGCGTAGACCCTTCATTACCCTAAA
583 TCAATTTTCACTTGAGTTTTTTCTCAGTCGGTCTTTTAAAGGCATGGACCCTTCATTACCC-AAA
* * ** * *
54118130 ACTTAGAGGAATATTCTGCTTCTTCGACAACCATAAAATTCGAGCGCTCCCTT-CTATTACTCTG
647 ACCTAGAGGAATATTCCGCTTCTTCG-TGACCATAAAATTCGAGCGC-CCCTTCCCATTACTCCG
* * * * *
54118194 TTGTCCAATCCTGAAC-AAAACTTCGGA-GAACCCATCATCCAATCCATACATCCTTGCCTTCAA
710 TGGTCCAATCC-CAACTGAAACTTCGGATG-ACCCATCATCCAGTCCATACATCCTTACCTTCAA
*
54118257 AAACCTTACTTCTTAGGTCGC
773 AAACCTTCCTTCTTAGGTCGC
* *
54118278 TGCTTACAAATCCTGCAAATCAAAAATCATATTTCAATGCGAGGAAGGTGCACGAATTGGGTTCA
1 CGCTTACAAATCCTGCAAATCAAAAATCATATTTCAATGCGAGGAAGGTGCACGAATTGGG-TGA
* ** * *
54118343 -CCATCACTG-TTCCAACAAGTGGAAACTTGGTTGGTGGCAGTCCC-GAATTGGTTGGAAACCAA
65 GCCATCACTGCTTCCAACAAGTGCAAACCCGTTTGGTGGCAGTCCCTG-ATTGGTTGGAAATCAA
* * * * * *
54118405 TGGACTTCATGGAAAGAGAGCAGTGCGAAGATATCGAAATGAGAGCTTGTTTAGTTACGACTAAG
129 TGGACTTAACGAAAAGAGAGCAGTGCGAAGATATCGAAACGAGAGCTTGTTTGGTTACGGCTAAG
* * * * * *
54118470 AAAAAATGCATCAGCTTCACCAAGGTAAAGTGTACAACGCCTTTTTTGAATGCGAGAATCGCAGT
194 GAAAAATGCGTCGGCTTCACCAAGGTAAAGTGTACAACGCCGTTTTTGAATGCAAGAATCACAGT
* * * *
54118535 GGGGGAGAA-TGAGATAATGAATAAACGGGTTGAAAGGAT--TATACACAACATCGTTGCCGAAG
259 AGGGGAGAAGT-AGATAATGAATAAACGGGTTGAAAGGATGGTACACGCAACATCGTTACCGAA-
* * * * *
54118597 GAAAA-CAAATGGGTATATTTTATCGAGTCGGATTATATGGGAGGATCCAAACCAAGGGTAACTA
322 GAAAAGCAAATAGGTATATCTTATCGAGTCGGATTATATGAGAGGGTCCAAACCAAGGGTGACTA
* * * *
54118661 ATTCTAGAGCTAGTCAGTATTTGGGCTCTGGTTTTCAACTTCAAATGTGAACCGTCAAATGGGTC
387 ATTCCAGAGCTAGTCAGTATTTGGGCTCCGGTTCTCAACTTCAAATGTGAACCGTCACATGGGTC
* * *
54118726 CAGAGTTTCAGTCGGGTTTTTTTTTAAGCATTGGCAATTCTAAAGTGGACAATTGTGGGTGTTGT
452 TAGAGTTTCAGTC-GGTTTTTTTTTAAGCAGTGGCAATTCTAAAGTGGACAATTGTAGGTGTTGT
* * * *
54118791 ACCACAATTTTGGACCATTGTGATTTTTTTTTTGTTTCTTTCGTTCAATATTTTGATATCACTTT
516 ACCACAATTGTGGACAATTGT-A---GTTTTTT-TTTCTTTCGTTCAATATTTTGATATCACTCT
* * **
54118856 AGGACCTTCAATTTGCACTTGAG-TTTTTCTTAGTCGGTCTTTTAAACACATGGACCCTTCATTA
576 AGGACCTTCAATTTTCACTTGAGTTTTTTCTCAGTCGGTCTTTTAAAGGCATGGACCCTTCATTA
* * * * *
54118920 TCCCAAAACCTAGAGGAATATTCCGCTTCTTCAATGACCATAAAATTTGAGCACCCCCTCCCATC
641 -CCCAAAACCTAGAGGAATATTCCGCTTCTTC-GTGACCATAAAATTCGAGCGCCCCTTCCCATT
*
54118985 ACTACGTGGTCCAATCC
704 ACTCCGTGGTCCAATCC
54119002 TGGTCGGAAC
Statistics
Matches: 1989, Mismatches: 281, Indels: 78
0.85 0.12 0.03
Matches are distributed among these distances:
790 11 0.01
791 542 0.27
792 103 0.05
793 338 0.17
794 168 0.08
795 443 0.22
796 217 0.11
797 113 0.06
798 54 0.03
ACGTcount: A:0.29, C:0.19, G:0.21, T:0.31
Consensus pattern (793 bp):
CGCTTACAAATCCTGCAAATCAAAAATCATATTTCAATGCGAGGAAGGTGCACGAATTGGGTGAG
CCATCACTGCTTCCAACAAGTGCAAACCCGTTTGGTGGCAGTCCCTGATTGGTTGGAAATCAATG
GACTTAACGAAAAGAGAGCAGTGCGAAGATATCGAAACGAGAGCTTGTTTGGTTACGGCTAAGGA
AAAATGCGTCGGCTTCACCAAGGTAAAGTGTACAACGCCGTTTTTGAATGCAAGAATCACAGTAG
GGGAGAAGTAGATAATGAATAAACGGGTTGAAAGGATGGTACACGCAACATCGTTACCGAAGAAA
AGCAAATAGGTATATCTTATCGAGTCGGATTATATGAGAGGGTCCAAACCAAGGGTGACTAATTC
CAGAGCTAGTCAGTATTTGGGCTCCGGTTCTCAACTTCAAATGTGAACCGTCACATGGGTCTAGA
GTTTCAGTCGGTTTTTTTTTAAGCAGTGGCAATTCTAAAGTGGACAATTGTAGGTGTTGTACCAC
AATTGTGGACAATTGTAGTTTTTTTTTCTTTCGTTCAATATTTTGATATCACTCTAGGACCTTCA
ATTTTCACTTGAGTTTTTTCTCAGTCGGTCTTTTAAAGGCATGGACCCTTCATTACCCAAAACCT
AGAGGAATATTCCGCTTCTTCGTGACCATAAAATTCGAGCGCCCCTTCCCATTACTCCGTGGTCC
AATCCCAACTGAAACTTCGGATGACCCATCATCCAGTCCATACATCCTTACCTTCAAAAACCTTC
CTTCTTAGGTCGC
Found at i:54119624 original size:14 final size:14
Alignment explanation
Indices: 54119605--54119631 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
54119595 ATTTATAAGT
54119605 TTATTATATATATA
1 TTATTATATATATA
54119619 TTATTATATATAT
1 TTATTATATATAT
54119632 TCTTAATGTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (14 bp):
TTATTATATATATA
Found at i:54125000 original size:46 final size:46
Alignment explanation
Indices: 54124933--54125082 Score: 228
Period size: 46 Copynumber: 3.3 Consensus size: 46
54124923 TGTCATAGTG
*
54124933 TCTTTCAACTATGGTCTTATTCATTTCCTGTCATGTTGCCATGGTA
1 TCTTTCAACCATGGTCTTATTCATTTCCTGTCATGTTGCCATGGTA
* * *
54124979 TCTTTCAACCATTGTCTTATTCATTTCCTGTCATGTTGTCATGATA
1 TCTTTCAACCATGGTCTTATTCATTTCCTGTCATGTTGCCATGGTA
* * * *
54125025 TCTTTCAACCATGGTATTGTTTATTTCCTGTCATGTTGCCATGGCA
1 TCTTTCAACCATGGTCTTATTCATTTCCTGTCATGTTGCCATGGTA
54125071 TCTTTCAACCAT
1 TCTTTCAACCAT
54125083 TAAAATTCTA
Statistics
Matches: 93, Mismatches: 11, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
46 93 1.00
ACGTcount: A:0.19, C:0.23, G:0.13, T:0.45
Consensus pattern (46 bp):
TCTTTCAACCATGGTCTTATTCATTTCCTGTCATGTTGCCATGGTA
Found at i:54128779 original size:6 final size:7
Alignment explanation
Indices: 54128760--54128784 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
54128750 ATGCAGGTGA
54128760 GGTTTTT
1 GGTTTTT
54128767 GGTTTTT
1 GGTTTTT
54128774 GGTTTTT
1 GGTTTTT
54128781 GGTT
1 GGTT
54128785 AAGCAAACAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.00, C:0.00, G:0.32, T:0.68
Consensus pattern (7 bp):
GGTTTTT
Found at i:54136829 original size:25 final size:25
Alignment explanation
Indices: 54136801--54136880 Score: 69
Period size: 25 Copynumber: 3.3 Consensus size: 25
54136791 CTTATTTCAT
54136801 TAAATAAAAAAT-TTTAAAAATATAA
1 TAAATAAAAAATATTTAAAAA-ATAA
* *
54136826 TAAATCAAATATATTTAAAAAAT-A
1 TAAATAAAAAATATTTAAAAAATAA
* * *
54136850 TTAA-AACAAATATTAAAACAAATAA
1 TAAATAAAAAATATTTAAA-AAATAA
54136875 -AAATAA
1 TAAATAA
54136881 TACTAAAACA
Statistics
Matches: 43, Mismatches: 8, Indels: 8
0.73 0.14 0.14
Matches are distributed among these distances:
23 10 0.23
24 10 0.23
25 15 0.35
26 8 0.19
ACGTcount: A:0.68, C:0.04, G:0.00, T:0.29
Consensus pattern (25 bp):
TAAATAAAAAATATTTAAAAAATAA
Found at i:54136841 original size:27 final size:25
Alignment explanation
Indices: 54136813--54136862 Score: 73
Period size: 25 Copynumber: 2.0 Consensus size: 25
54136803 AATAAAAAAT
*
54136813 TTTAAAAATATAATAAATCAAATATA
1 TTTAAAAA-ATAATAAAACAAATATA
*
54136839 TTTAAAAAATATTAAAACAAATAT
1 TTTAAAAAATAATAAAACAAATAT
54136863 TAAAACAAAT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 14 0.64
26 8 0.36
ACGTcount: A:0.62, C:0.04, G:0.00, T:0.34
Consensus pattern (25 bp):
TTTAAAAAATAATAAAACAAATATA
Found at i:54136862 original size:12 final size:12
Alignment explanation
Indices: 54136836--54136903 Score: 63
Period size: 12 Copynumber: 6.0 Consensus size: 12
54136826 TAAATCAAAT
*
54136836 ATATTTAAA-AA
1 ATATTAAAACAA
54136847 ATATTAAAACAA
1 ATATTAAAACAA
54136859 ATATTAAAACAA
1 ATATTAAAACAA
*
54136871 ATA--AAAA-TA
1 ATATTAAAACAA
*
54136880 ATACTAAAACAA
1 ATATTAAAACAA
* *
54136892 TTTTTAAAACAA
1 ATATTAAAACAA
54136904 CACACAAATT
Statistics
Matches: 47, Mismatches: 6, Indels: 7
0.78 0.10 0.12
Matches are distributed among these distances:
9 4 0.09
10 4 0.09
11 12 0.26
12 27 0.57
ACGTcount: A:0.65, C:0.07, G:0.00, T:0.28
Consensus pattern (12 bp):
ATATTAAAACAA
Found at i:54136890 original size:33 final size:32
Alignment explanation
Indices: 54136842--54136903 Score: 88
Period size: 33 Copynumber: 1.9 Consensus size: 32
54136832 AAATATATTT
*
54136842 AAAAAATATTAAAACAAATATTAAAACAAATA
1 AAAAAATACTAAAACAAATATTAAAACAAATA
* *
54136874 AAAATAATACTAAAACAATTTTTAAAACAA
1 AAAA-AATACTAAAACAAATATTAAAACAA
54136904 CACACAAATT
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
32 4 0.15
33 22 0.85
ACGTcount: A:0.68, C:0.08, G:0.00, T:0.24
Consensus pattern (32 bp):
AAAAAATACTAAAACAAATATTAAAACAAATA
Found at i:54136962 original size:10 final size:9
Alignment explanation
Indices: 54136941--54136974 Score: 50
Period size: 9 Copynumber: 3.8 Consensus size: 9
54136931 TAGTTATATT
*
54136941 AAAAATTTA
1 AAAAAATTA
*
54136950 AAATAATTA
1 AAAAAATTA
54136959 AAAAAATTA
1 AAAAAATTA
54136968 AAAAAAT
1 AAAAAAT
54136975 AAATTAATAT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
9 22 1.00
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (9 bp):
AAAAAATTA
Found at i:54137650 original size:12 final size:11
Alignment explanation
Indices: 54137612--54137650 Score: 51
Period size: 12 Copynumber: 3.4 Consensus size: 11
54137602 TTTTTGTTTT
54137612 ATTTAATATTA
1 ATTTAATATTA
54137623 ATATTAATATTA
1 AT-TTAATATTA
*
54137635 ATTTATTATTA
1 ATTTAATATTA
54137646 TATTT
1 -ATTT
54137651 TTTAAAAAAT
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
11 10 0.40
12 15 0.60
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (11 bp):
ATTTAATATTA
Found at i:54138191 original size:32 final size:32
Alignment explanation
Indices: 54138113--54138175 Score: 119
Period size: 32 Copynumber: 2.0 Consensus size: 32
54138103 CTCCTTACAG
54138113 ACAAGAATG-AAAAAAAAAACTGTTGGAATTT
1 ACAAGAATGAAAAAAAAAAACTGTTGGAATTT
54138144 ACAAGAATGAAAAAAAAAAACTGTTGGAATTT
1 ACAAGAATGAAAAAAAAAAACTGTTGGAATTT
54138176 CTTAAAGCAA
Statistics
Matches: 31, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
31 9 0.29
32 22 0.71
ACGTcount: A:0.56, C:0.06, G:0.16, T:0.22
Consensus pattern (32 bp):
ACAAGAATGAAAAAAAAAAACTGTTGGAATTT
Found at i:54138807 original size:22 final size:23
Alignment explanation
Indices: 54138765--54138807 Score: 61
Period size: 22 Copynumber: 1.9 Consensus size: 23
54138755 AATTAATCTT
*
54138765 AAAATAAATATAAAAATATAAAA
1 AAAATAAATATAAAAAAATAAAA
*
54138788 AAAATTAAT-TAAAAAAATAA
1 AAAATAAATATAAAAAAATAA
54138808 CAGCAAAAAG
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 10 0.56
23 8 0.44
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (23 bp):
AAAATAAATATAAAAAAATAAAA
Found at i:54153765 original size:4 final size:4
Alignment explanation
Indices: 54153756--54153796 Score: 82
Period size: 4 Copynumber: 10.2 Consensus size: 4
54153746 CCTGGCATCT
54153756 ATGG ATGG ATGG ATGG ATGG ATGG ATGG ATGG ATGG ATGG A
1 ATGG ATGG ATGG ATGG ATGG ATGG ATGG ATGG ATGG ATGG A
54153797 AGGAATTTAT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 37 1.00
ACGTcount: A:0.27, C:0.00, G:0.49, T:0.24
Consensus pattern (4 bp):
ATGG
Found at i:54159208 original size:12 final size:12
Alignment explanation
Indices: 54159191--54159225 Score: 52
Period size: 12 Copynumber: 2.9 Consensus size: 12
54159181 AGAATGTATG
*
54159191 ATGCAAATGCAA
1 ATGCAAAAGCAA
54159203 ATGCAAAAGCAA
1 ATGCAAAAGCAA
*
54159215 AAGCAAAAGCA
1 ATGCAAAAGCA
54159226 TTTCACTACA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.57, C:0.17, G:0.17, T:0.09
Consensus pattern (12 bp):
ATGCAAAAGCAA
Found at i:54168155 original size:14 final size:14
Alignment explanation
Indices: 54168136--54168165 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
54168126 CTCTACTTTT
54168136 ATAGGAAGAAGGAG
1 ATAGGAAGAAGGAG
54168150 ATAGGAAGAAGGAG
1 ATAGGAAGAAGGAG
54168164 AT
1 AT
54168166 CTAGTTAGTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.50, C:0.00, G:0.40, T:0.10
Consensus pattern (14 bp):
ATAGGAAGAAGGAG
Found at i:54168771 original size:24 final size:25
Alignment explanation
Indices: 54168729--54168782 Score: 74
Period size: 24 Copynumber: 2.2 Consensus size: 25
54168719 ACTCTTGTTT
* *
54168729 TTCATTTATTTATTCAAAAAAATAG
1 TTCATTTATATATTAAAAAAAATAG
*
54168754 TTCATTTA-ATATTAAAAAAATTAG
1 TTCATTTATATATTAAAAAAAATAG
54168778 TTCAT
1 TTCAT
54168783 CTATTTGAAA
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
24 18 0.69
25 8 0.31
ACGTcount: A:0.44, C:0.07, G:0.04, T:0.44
Consensus pattern (25 bp):
TTCATTTATATATTAAAAAAAATAG
Found at i:54179010 original size:24 final size:24
Alignment explanation
Indices: 54178978--54179025 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
54178968 CAACTACATG
54178978 ACTATTGTATTCTATAAATTTTTC
1 ACTATTGTATTCTATAAATTTTTC
54179002 ACTATTGTATTCTATAAATTTTTC
1 ACTATTGTATTCTATAAATTTTTC
54179026 TCTTGAAACT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.29, C:0.12, G:0.04, T:0.54
Consensus pattern (24 bp):
ACTATTGTATTCTATAAATTTTTC
Found at i:54183137 original size:13 final size:13
Alignment explanation
Indices: 54183119--54183144 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
54183109 TTTGTAGTTG
54183119 AGAAAAAAAAACT
1 AGAAAAAAAAACT
54183132 AGAAAAAAAAACT
1 AGAAAAAAAAACT
54183145 TACTTGCAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.77, C:0.08, G:0.08, T:0.08
Consensus pattern (13 bp):
AGAAAAAAAAACT
Done.