Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr9
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 91122320
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2661692 characters in sequence are not A, C, G, or T
File 177 of 279
Found at i:58318921 original size:16 final size:16
Alignment explanation
Indices: 58318900--58318967 Score: 127
Period size: 16 Copynumber: 4.2 Consensus size: 16
58318890 TTTGGTTCGC
58318900 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
*
58318916 TGTATTGGATTAGAGT
1 TGTATTGGATTAGAGG
58318932 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
58318948 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
58318964 TGTA
1 TGTA
58318968 ATAGCAAATC
Statistics
Matches: 50, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
16 50 1.00
ACGTcount: A:0.25, C:0.00, G:0.35, T:0.40
Consensus pattern (16 bp):
TGTATTGGATTAGAGG
Found at i:58319351 original size:14 final size:15
Alignment explanation
Indices: 58319302--58319353 Score: 56
Period size: 15 Copynumber: 3.6 Consensus size: 15
58319292 ATAAAATATA
58319302 AATTAACATA-ATTAT
1 AATTAA-ATATATTAT
*
58319317 TATTAAATATATTAT
1 AATTAAATATATTAT
58319332 AATTAAA-ATA-TAT
1 AATTAAATATATTAT
*
58319345 AATTTAATA
1 AATTAAATA
58319354 AAATTCTTAA
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
13 9 0.28
14 7 0.22
15 16 0.50
ACGTcount: A:0.54, C:0.02, G:0.00, T:0.44
Consensus pattern (15 bp):
AATTAAATATATTAT
Found at i:58319355 original size:59 final size:58
Alignment explanation
Indices: 58319186--58319482 Score: 164
Period size: 59 Copynumber: 5.0 Consensus size: 58
58319176 ATCATATTTA
* * *
58319186 AACATAATTATTATTAGATATATTATAATTAAAATATA-GAATTTAATAAAATTCTTAAT
1 AACATAATTATTATTAAATATATTATAATTAAAATATATG-ATTTAATAAAA-TATAAAT
* * * * *
58319245 AATCA-ATATTCTTATATGAATTTACTCA-AA-TAATAATATATGATACT-ATAAAATATAAATT
1 AA-CATA-ATTATTAT-TAAATATA-TTATAATTAA-AATATATGAT-TTAATAAAATATAAA-T
* * *
58319306 AACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAAT
1 AACATAATTATTATTAAATATATTATAATTAAAATATATGATTTAATAAAA-TATAAAT
* * * * * * * *
58319365 AA-TTAA-TATTCTTATATGA-ATTTACTCAAATCATAATATATGATACT-ATAAAAGATAATTT
1 AACATAATTATTATTAAAT-ATA-TTA-T--AATTAAAATATATGAT-TTAATAAAATATAA-AT
* * *
58319426 GAA-ATAATTAATATTAAATATATTTTAATTAAAATATATGATTTAATAAAATTTAAA
1 -AACATAATTATTATTAAATATATTATAATTAAAATATATGATTTAATAAAATATAAA
58319483 ATAATTATAA
Statistics
Matches: 176, Mismatches: 38, Indels: 49
0.67 0.14 0.19
Matches are distributed among these distances:
57 10 0.06
58 11 0.06
59 53 0.30
60 34 0.19
61 46 0.26
62 13 0.07
63 9 0.05
ACGTcount: A:0.51, C:0.05, G:0.03, T:0.42
Consensus pattern (58 bp):
AACATAATTATTATTAAATATATTATAATTAAAATATATGATTTAATAAAATATAAAT
Found at i:58319401 original size:120 final size:121
Alignment explanation
Indices: 58319186--58319478 Score: 491
Period size: 120 Copynumber: 2.4 Consensus size: 121
58319176 ATCATATTTA
* *
58319186 AACATAATTATTATTAGATATATTATAATTAAAATATAGAATTTAATAAAATTCTTAATAATCAA
1 AACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATCAA
*
58319251 TATTCTTATATGAATTTACTCAAATAATAATATATGATACTATAAAATATAAATT-
66 TATTCTTATATGAATTTACTCAAATAATAATATATGATACTATAAAAGATAAATTG
*
58319306 AACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATCAA
* *
58319371 TATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAAGATAATTTG
66 TATTCTTATATGAATTTACTCAAATAATAATATATGATACTATAAAAGATAAATTG
* * *
58319427 AA-ATAATTAATATTAAATATATTTTAATTAAAATATATGATTTAATAAAATT
1 AACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATT
58319479 TAAAATAATT
Statistics
Matches: 163, Mismatches: 9, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
120 161 0.99
121 2 0.01
ACGTcount: A:0.50, C:0.05, G:0.03, T:0.42
Consensus pattern (121 bp):
AACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATCAA
TATTCTTATATGAATTTACTCAAATAATAATATATGATACTATAAAAGATAAATTG
Found at i:58329911 original size:76 final size:77
Alignment explanation
Indices: 58329790--58330029 Score: 259
Period size: 77 Copynumber: 3.1 Consensus size: 77
58329780 TGATATTTTT
* * *
58329790 ATTTCTGTTTTTCAAAAAAATCAACTTATATTGTGAGAGGAGAGTTGAGCCTCGGGTCACACG-T
1 ATTTCTGTTTTTCAAAAAAATCAACTCATATTGTGAGAGGTGAGTTGAGCCTCAGGTCACACGCT
*
58329854 CGAGGTATTTTCA
66 -GAGGTATCTTCA
* * *
58329867 ATTTCTGTTGTTC-AAAAAATCAACTCATATGGTGAGAGGTGAGTTGAGCCTCAGGTCACATGCT
1 ATTTCTGTTTTTCAAAAAAATCAACTCATATTGTGAGAGGTGAGTTGAGCCTCAGGTCACACGCT
58329931 GAGGTATCTTCA
66 GAGGTATCTTCA
* * * * * * * * ** * *
58329943 GTTCCTATTTTTCGAAAAAGTCAACTCATATTGCGAGAAGTAAGTTGAGCCTCAAATCACGCACT
1 ATTTCTGTTTTTCAAAAAAATCAACTCATATTGTGAGAGGTGAGTTGAGCCTCAGGTCACACGCT
* *
58330008 GAGATATTTTCA
66 GAGGTATCTTCA
*
58330020 ATTTATGTTT
1 ATTTCTGTTT
58330030 AAAAAAAACA
Statistics
Matches: 134, Mismatches: 27, Indels: 4
0.81 0.16 0.02
Matches are distributed among these distances:
76 64 0.48
77 70 0.52
ACGTcount: A:0.29, C:0.17, G:0.20, T:0.34
Consensus pattern (77 bp):
ATTTCTGTTTTTCAAAAAAATCAACTCATATTGTGAGAGGTGAGTTGAGCCTCAGGTCACACGCT
GAGGTATCTTCA
Found at i:58330118 original size:93 final size:93
Alignment explanation
Indices: 58329956--58330130 Score: 233
Period size: 93 Copynumber: 1.9 Consensus size: 93
58329946 CCTATTTTTC
*
58329956 GAAAAAGTCAACTCATATTGCGAGAAGTAAGTTGAGCCTCAAATCACGCACTGAGATATTTTCAA
1 GAAAAAGTCAACTCATATTGCGAGAAGTAAGTTGAGCCTCAAATCACACACTGAGATATTTTCAA
58330021 TTTATGTTTAAAAAAAACAAAAAAAAAA
66 TTTATGTTTAAAAAAAACAAAAAAAAAA
* * * *** * * * * *
58330049 GAAAACGTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTTACACGCTGAGGTATTTTTAG
1 GAAAAAGTCAACTCATATTGCGAGAAGTAAGTTGAGCCTCAAATCACACACTGAGATATTTTCAA
*
58330114 TTTATGTTTCAAAAAAA
66 TTTATGTTTAAAAAAAA
58330131 TCAACTCATA
Statistics
Matches: 69, Mismatches: 13, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
93 69 1.00
ACGTcount: A:0.39, C:0.14, G:0.19, T:0.27
Consensus pattern (93 bp):
GAAAAAGTCAACTCATATTGCGAGAAGTAAGTTGAGCCTCAAATCACACACTGAGATATTTTCAA
TTTATGTTTAAAAAAAACAAAAAAAAAA
Found at i:58330179 original size:75 final size:75
Alignment explanation
Indices: 58330056--58330373 Score: 447
Period size: 75 Copynumber: 4.2 Consensus size: 75
58330046 AAAGAAAACG
* * *
58330056 TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTTACACGCTGAGGTATTTTTAGTTTATGT
1 TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACACACTGAGGTATTTTTAGTTTATGT
58330121 TTCAAAAAAA
66 TTCAAAAAAA
* ** ** *
58330131 TCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAAATCATGCACTGAGGTATTTTTAATTTATGT
1 TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACACACTGAGGTATTTTTAGTTTATG-
*
58330196 TTTAAAAAAAAAA
65 TTT--CAAAAAAA
* *
58330209 CGTCAACTCATATTGTGAGAGGTGAGTTGAGCCTCAGGTCACACGCTGAGGTATTTTTAGTTTAT
1 --TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACACACTGAGGTATTTTTAGTTTAT
58330274 GTTTCAAAAAAA
64 GTTTCAAAAAAA
* * **
58330286 TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCGCGTACTGAGGTATTTTTAGTTTATGT
1 TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACACACTGAGGTATTTTTAGTTTATGT
58330351 TTCAAAAAAA
66 TTCAAAAAAA
58330361 TCAACTCATATTG
1 TCAACTCATATTG
58330374 TGACCCTCGG
Statistics
Matches: 213, Mismatches: 25, Indels: 10
0.86 0.10 0.04
Matches are distributed among these distances:
75 137 0.64
76 3 0.01
77 7 0.03
78 7 0.03
79 3 0.01
80 56 0.26
ACGTcount: A:0.30, C:0.15, G:0.22, T:0.33
Consensus pattern (75 bp):
TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACACACTGAGGTATTTTTAGTTTATGT
TTCAAAAAAA
Found at i:58330232 original size:155 final size:155
Alignment explanation
Indices: 58330043--58330360 Score: 519
Period size: 155 Copynumber: 2.0 Consensus size: 155
58330033 AAAAACAAAA
* *
58330043 AAAAAAGAAAACGTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTTACACGCTGAGGTAT
1 AAAAAA-AAAACGTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACACGCTGAGGTAT
*
58330108 TTTTAGTTTATGTTTCAAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAAATCATGC
65 TTTTAGTTTATGTTTCAAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAAATCACGC
*
58330173 ACTGAGGTATTTTTAATTTATGTTTT
130 ACTGAGGTATTTTTAATTTATGTTTC
*
58330199 AAAAAAAAAACGTCAACTCATATTGTGAGAGGTGAGTTGAGCCTCAGGTCACACGCTGAGGTATT
1 AAAAAAAAAACGTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACACGCTGAGGTATT
* *** * *
58330264 TTTAGTTTATGTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCGCGTA
66 TTTAGTTTATGTTTCAAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAAATCACGCA
*
58330329 CTGAGGTATTTTTAGTTTATGTTTC
131 CTGAGGTATTTTTAATTTATGTTTC
58330354 AAAAAAA
1 AAAAAAA
58330361 TCAACTCATA
Statistics
Matches: 150, Mismatches: 12, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
155 144 0.96
156 6 0.04
ACGTcount: A:0.32, C:0.14, G:0.22, T:0.32
Consensus pattern (155 bp):
AAAAAAAAAACGTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACACGCTGAGGTATT
TTTAGTTTATGTTTCAAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAAATCACGCA
CTGAGGTATTTTTAATTTATGTTTC
Found at i:58330744 original size:62 final size:63
Alignment explanation
Indices: 58330612--58330753 Score: 232
Period size: 62 Copynumber: 2.3 Consensus size: 63
58330602 TTGGCCTCCT
* * *
58330612 TGAAGTTGCAGTGGAGCAGGTTGAAATTACAAGTCTTATCTCTATGAAGTTGTAGCGGAACCC
1 TGAAGTTGTAGTGGAGCAGGTTGAAATTACAAGTCTTATCTCCATGAAGTTGTAGCGAAACCC
* *
58330675 TGAAGTTGTTGTGGAGCAGGTTGAAATTACAAGT-TTATCTCCATGAAGTTGTAGCGAAATCC
1 TGAAGTTGTAGTGGAGCAGGTTGAAATTACAAGTCTTATCTCCATGAAGTTGTAGCGAAACCC
58330737 TGAAGTTGTAGTGGAGC
1 TGAAGTTGTAGTGGAGC
58330754 GGACCAAAGA
Statistics
Matches: 73, Mismatches: 6, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
62 41 0.56
63 32 0.44
ACGTcount: A:0.28, C:0.13, G:0.28, T:0.30
Consensus pattern (63 bp):
TGAAGTTGTAGTGGAGCAGGTTGAAATTACAAGTCTTATCTCCATGAAGTTGTAGCGAAACCC
Found at i:58332307 original size:22 final size:22
Alignment explanation
Indices: 58332269--58332325 Score: 62
Period size: 22 Copynumber: 2.5 Consensus size: 22
58332259 ATATTTTTGC
* *
58332269 TATTATCTATTATTATCATATT
1 TATTATATATTTTTATCATATT
*
58332291 TATTAT-TATTTTCTATCCTATT
1 TATTATATATTTT-TATCATATT
58332313 TATTTATATATTT
1 TA-TTATATATTT
58332326 CTTTTTAGTA
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
21 5 0.17
22 16 0.53
23 4 0.13
24 5 0.17
ACGTcount: A:0.28, C:0.09, G:0.00, T:0.63
Consensus pattern (22 bp):
TATTATATATTTTTATCATATT
Found at i:58332409 original size:17 final size:18
Alignment explanation
Indices: 58332366--58332409 Score: 56
Period size: 17 Copynumber: 2.6 Consensus size: 18
58332356 ACTTTCCTTT
58332366 TATTATTA-TCTTTAACA
1 TATTATTATTCTTTAACA
* *
58332383 TATTGTTATTCTTTTA-A
1 TATTATTATTCTTTAACA
58332400 TATTATTATT
1 TATTATTATT
58332410 AATTATTATA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
17 17 0.74
18 6 0.26
ACGTcount: A:0.30, C:0.07, G:0.02, T:0.61
Consensus pattern (18 bp):
TATTATTATTCTTTAACA
Found at i:58332545 original size:3 final size:3
Alignment explanation
Indices: 58332533--58332616 Score: 57
Period size: 3 Copynumber: 28.3 Consensus size: 3
58332523 TTTGTCATTG
* * * * *
58332533 TAT T-T TAT TAT TAT TAG TAT TAC TAT TAT GAT TAT TAT TTT TAA TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
* * *
58332580 TAA TA- TAT TTT TA- TAT GTAT ATAC TAT TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT -TAT -TAT TAT TAT TAT TAT T
58332617 CATAATATAT
Statistics
Matches: 61, Mismatches: 16, Indels: 8
0.72 0.19 0.09
Matches are distributed among these distances:
2 6 0.10
3 50 0.82
4 5 0.08
ACGTcount: A:0.33, C:0.02, G:0.04, T:0.61
Consensus pattern (3 bp):
TAT
Found at i:58332693 original size:27 final size:27
Alignment explanation
Indices: 58332627--58332694 Score: 86
Period size: 25 Copynumber: 2.6 Consensus size: 27
58332617 CATAATATAT
* *
58332627 ATATTATGTATACATTTTTTAAATACT
1 ATATTATGTATATATTTTTTAAATACC
*
58332654 ATATTATATATATA-TTTTT-AATACC
1 ATATTATGTATATATTTTTTAAATACC
*
58332679 ATATTATGTACATATT
1 ATATTATGTATATATT
58332695 ATTATATCTA
Statistics
Matches: 35, Mismatches: 5, Indels: 3
0.81 0.12 0.07
Matches are distributed among these distances:
25 17 0.49
26 6 0.17
27 12 0.34
ACGTcount: A:0.38, C:0.07, G:0.03, T:0.51
Consensus pattern (27 bp):
ATATTATGTATATATTTTTTAAATACC
Found at i:58332790 original size:18 final size:18
Alignment explanation
Indices: 58332769--58332827 Score: 59
Period size: 18 Copynumber: 3.2 Consensus size: 18
58332759 ATATATATAC
58332769 TTTTTATATATAATATTA
1 TTTTTATATATAATATTA
*
58332787 TTTTTATATATCAT-TATA
1 TTTTTATATATAATAT-TA
*
58332805 TTTATTAT-TATACTTATTA
1 TTT-TTATATATA-ATATTA
58332824 TTTT
1 TTTT
58332828 CACTATTGTT
Statistics
Matches: 34, Mismatches: 3, Indels: 8
0.76 0.07 0.18
Matches are distributed among these distances:
17 1 0.03
18 22 0.65
19 10 0.29
20 1 0.03
ACGTcount: A:0.32, C:0.03, G:0.00, T:0.64
Consensus pattern (18 bp):
TTTTTATATATAATATTA
Found at i:58332865 original size:26 final size:27
Alignment explanation
Indices: 58332821--58332874 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 27
58332811 ATTATACTTA
* * *
58332821 TTATTTTCACTATTGTTACTTATTATT
1 TTATTTTCAATATTATTACCTATTATT
58332848 TTATTTT-AATATTATTACCTATTATT
1 TTATTTTCAATATTATTACCTATTATT
58332874 T
1 T
58332875 GGTATACATA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
26 17 0.71
27 7 0.29
ACGTcount: A:0.26, C:0.09, G:0.02, T:0.63
Consensus pattern (27 bp):
TTATTTTCAATATTATTACCTATTATT
Found at i:58335880 original size:78 final size:77
Alignment explanation
Indices: 58335752--58335906 Score: 301
Period size: 78 Copynumber: 2.0 Consensus size: 77
58335742 AAGTATCCAA
58335752 AGGTGCTTTCATGTCATCAATGGACCCTGCCCAATCACTATCTGAATACCCTATCAATTTGAGCT
1 AGGTGCTTTCATGTCATCAATGGACCCTGCCCAATCACTATCTGAATACCCTATCAATTTGAGCT
58335817 CTTTTGCCTTCT
66 CTTTTGCCTTCT
58335829 AGGTGCTTTTCATGTCATCAATGGACCCTGCCCAATCACTATCTGAATACCCTATCAATTTGAGC
1 AGGTGC-TTTCATGTCATCAATGGACCCTGCCCAATCACTATCTGAATACCCTATCAATTTGAGC
58335894 TCTTTTGCCTTCT
65 TCTTTTGCCTTCT
58335907 CAAAATTCAC
Statistics
Matches: 77, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
77 6 0.08
78 71 0.92
ACGTcount: A:0.22, C:0.28, G:0.14, T:0.35
Consensus pattern (77 bp):
AGGTGCTTTCATGTCATCAATGGACCCTGCCCAATCACTATCTGAATACCCTATCAATTTGAGCT
CTTTTGCCTTCT
Found at i:58342421 original size:16 final size:16
Alignment explanation
Indices: 58342400--58342431 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
58342390 GAACACTGTT
*
58342400 TTGATTGTGAGGAACG
1 TTGATTGTGAGAAACG
58342416 TTGATTGTGAGAAACG
1 TTGATTGTGAGAAACG
58342432 GTAGCACCAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.28, C:0.06, G:0.34, T:0.31
Consensus pattern (16 bp):
TTGATTGTGAGAAACG
Found at i:58345924 original size:46 final size:45
Alignment explanation
Indices: 58345819--58346104 Score: 201
Period size: 46 Copynumber: 6.6 Consensus size: 45
58345809 TTTTAATCCA
* * *
58345819 CTCCACTGTAA-CTTCAGGGAGATAGGA--T-AGTGTCTTCGATCTG
1 CTCCACTGTAATC-TCAGGGAGATAAGATCTGAAT-TCTTTGATCTG
* * *
58345862 CTCCGCTGTAACCTCAGGGAGATAAGATCTGAAATTCTTTGGTCTG
1 CTCCACTGTAATCTCAGGGAGATAAGATCTG-AATTCTTTGATCTG
* * * *
58345908 TTCCACTGTAATCTCAGGGAGATAAGACCTG-A---TGTGATCTT
1 CTCCACTGTAATCTCAGGGAGATAAGATCTGAATTCTTTGATCTG
* * * * *
58345949 CTCTACTGTAA-CTTTAGAGAGATAAGATC------CTTTAATCCG
1 CTCCACTGTAATC-TCAGGGAGATAAGATCTGAATTCTTTGATCTG
* * * *
58345988 CTCCATTGTAATCTCAAGGAGATAGGAT-T-ACTATCTTTGATCTG
1 CTCCACTGTAATCTCAGGGAGATAAGATCTGAAT-TCTTTGATCTG
* *
58346032 CTCCGCTGTAATCTCAGGGAGATAAGATCTGAAATTCTTTGGTCTG
1 CTCCACTGTAATCTCAGGGAGATAAGATCTG-AATTCTTTGATCTG
*
58346078 TTCCACTGTAATCTCAGGGAGATAAGA
1 CTCCACTGTAATCTCAGGGAGATAAGA
58346105 CCTGTATTAT
Statistics
Matches: 189, Mismatches: 37, Indels: 31
0.74 0.14 0.12
Matches are distributed among these distances:
39 25 0.13
40 2 0.01
41 28 0.15
43 23 0.12
44 34 0.18
45 2 0.01
46 71 0.38
47 4 0.02
ACGTcount: A:0.27, C:0.20, G:0.22, T:0.32
Consensus pattern (45 bp):
CTCCACTGTAATCTCAGGGAGATAAGATCTGAATTCTTTGATCTG
Found at i:58346074 original size:170 final size:170
Alignment explanation
Indices: 58345734--58346108 Score: 513
Period size: 170 Copynumber: 2.2 Consensus size: 170
58345724 TTTCAATCCA
* * * * *
58345734 TTCCACTG-CATCTTCAGGGAAATAAGACTTAATGCGACCTACTCTGCTGTAACCTCAGAGAGAT
1 TTCCACTGTAATC-TCAGGGAGATAAGACCTGATGCGACCTACTCTACTGTAACCTCAGAGAGAT
* * *
58345798 AAGATCCTTTATTTTAATCCACTCCACTGTAACTTCAGGGAGATAGGATAGTGTCTTCGATCTGC
65 AAGATCC----TTTTAATCCACTCCACTGTAACTTCAAGGAGATAGGATACTATCTTCGATCTGC
58345863 TCCGCTGTAACCTCAGGGAGATAAGATCTGAAATTCTTTGGTCTG
126 TCCGCTGTAACCTCAGGGAGATAAGATCTGAAATTCTTTGGTCTG
* * * * *
58345908 TTCCACTGTAATCTCAGGGAGATAAGACCTGATGTGATCTTCTCTACTGTAACTTTAGAGAGATA
1 TTCCACTGTAATCTCAGGGAGATAAGACCTGATGCGACCTACTCTACTGTAACCTCAGAGAGATA
* * *
58345973 AGATCC-TTTAATCCGCTCCATTGTAA-TCTCAAGGAGATAGGATTACTATCTTTGATCTGCTCC
66 AGATCCTTTTAATCCACTCCACTGTAACT-TCAAGGAGATAGGA-TACTATCTTCGATCTGCTCC
*
58346036 GCTGTAATCTCAGGGAGATAAGATCTGAAATTCTTTGGTCTG
129 GCTGTAACCTCAGGGAGATAAGATCTGAAATTCTTTGGTCTG
58346078 TTCCACTGTAATCTCAGGGAGATAAGACCTG
1 TTCCACTGTAATCTCAGGGAGATAAGACCTG
58346109 TATTATGAAC
Statistics
Matches: 181, Mismatches: 17, Indels: 10
0.87 0.08 0.05
Matches are distributed among these distances:
168 1 0.01
169 31 0.17
170 89 0.49
174 57 0.31
175 3 0.02
ACGTcount: A:0.27, C:0.21, G:0.20, T:0.31
Consensus pattern (170 bp):
TTCCACTGTAATCTCAGGGAGATAAGACCTGATGCGACCTACTCTACTGTAACCTCAGAGAGATA
AGATCCTTTTAATCCACTCCACTGTAACTTCAAGGAGATAGGATACTATCTTCGATCTGCTCCGC
TGTAACCTCAGGGAGATAAGATCTGAAATTCTTTGGTCTG
Found at i:58354919 original size:67 final size:67
Alignment explanation
Indices: 58354811--58354944 Score: 223
Period size: 67 Copynumber: 2.0 Consensus size: 67
58354801 TTGCAGATGA
* * *
58354811 TCAGCTACCTCGCGCACTTGAGTCACCGCCTCTCCCATAATATAATCTCTTTCTCTAACCTGCTC
1 TCAGCCACCTCGCGCACCTGAGTCACCGCCTCTCCCATAATATAATCTCTTTCTCCAACCTGCTC
58354876 TT
66 TT
* *
58354878 TCAGCCACTTCGCGCACCTGAGTCACCGCCTCTCCCATAATATAATCTCTTTCTCCAATCTGCTC
1 TCAGCCACCTCGCGCACCTGAGTCACCGCCTCTCCCATAATATAATCTCTTTCTCCAACCTGCTC
58354943 TT
66 TT
58354945 GAGACCGACG
Statistics
Matches: 62, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
67 62 1.00
ACGTcount: A:0.19, C:0.38, G:0.10, T:0.32
Consensus pattern (67 bp):
TCAGCCACCTCGCGCACCTGAGTCACCGCCTCTCCCATAATATAATCTCTTTCTCCAACCTGCTC
TT
Found at i:58357978 original size:110 final size:110
Alignment explanation
Indices: 58357785--58357997 Score: 408
Period size: 110 Copynumber: 1.9 Consensus size: 110
58357775 GTATTAAAAC
58357785 GTTGAAAATTTTTAGGAAAATGGGCATATTTCACATTATTCGAGAAAGAGAATCATATCCTGTAA
1 GTTGAAAATTTTTAGGAAAATGGGCATATTTCACATTATTCGAGAAAGAGAATCATATCCTGTAA
58357850 GTTAGAATACAATGTCTCAAATTCCCAATACATGAATGAATGCTA
66 GTTAGAATACAATGTCTCAAATTCCCAATACATGAATGAATGCTA
*
58357895 GTTGAAAATTTTTAGGAAAATGGGCATATTTCACATTATTCGAGAAAGAGAATTATATCCTGTAA
1 GTTGAAAATTTTTAGGAAAATGGGCATATTTCACATTATTCGAGAAAGAGAATCATATCCTGTAA
*
58357960 GTTAGAATACAATGTCTCAAATTCCCAATACGTGAATG
66 GTTAGAATACAATGTCTCAAATTCCCAATACATGAATG
58357998 NNNNNNNNNN
Statistics
Matches: 101, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
110 101 1.00
ACGTcount: A:0.38, C:0.13, G:0.17, T:0.31
Consensus pattern (110 bp):
GTTGAAAATTTTTAGGAAAATGGGCATATTTCACATTATTCGAGAAAGAGAATCATATCCTGTAA
GTTAGAATACAATGTCTCAAATTCCCAATACATGAATGAATGCTA
Found at i:58358430 original size:46 final size:46
Alignment explanation
Indices: 58358379--58358632 Score: 354
Period size: 46 Copynumber: 5.6 Consensus size: 46
58358369 GACGAGGGCT
58358379 AGTGTAAGACATGTCTGGGACATGCATCAGCCACAGTATGAGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCAGCCACAGTATGAGAGCC
58358425 AGTGTAAGACATGTCTGGGACATGCATCAGCCACAGTATGAGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCAGCCACAGTATGAGAGCC
58358471 AGTGTAAGACATGTCTGGGACATGCATCAGCCACAGTATGAGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCAGCCACAGTATGAGAGCC
* * * **
58358517 AGTGTAAGACATGGCTGGGACATGCATCGGCCTCGAG-ATGTTAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCAGCCAC-AGTATGAGAGCC
* * * * * *
58358563 AGTGTCAGACATGTCTGGGACATGCGTCGGCTAC-G-A-GATGTGCT
1 AGTGTAAGACATGTCTGGGACATGCATCAGCCACAGTATGA-GAGCC
*
58358607 AGTGTAAGACATGTCTAGGACATGCA
1 AGTGTAAGACATGTCTGGGACATGCA
58358633 AGACCTGTCT
Statistics
Matches: 189, Mismatches: 17, Indels: 6
0.89 0.08 0.03
Matches are distributed among these distances:
43 1 0.01
44 27 0.14
46 159 0.84
47 2 0.01
ACGTcount: A:0.28, C:0.21, G:0.30, T:0.21
Consensus pattern (46 bp):
AGTGTAAGACATGTCTGGGACATGCATCAGCCACAGTATGAGAGCC
Found at i:58362078 original size:46 final size:46
Alignment explanation
Indices: 58362026--58362201 Score: 171
Period size: 46 Copynumber: 3.8 Consensus size: 46
58362016 TGGTTGAGCA
* *
58362026 TCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCGAATG
1 TCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * * *
58362072 TTCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
* *
58362117 CATCCGAGCTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
58362165 CCCGAGCTCATTGAGTTAAGTCCGAGTTCACTTATGG
1 TCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGG
58362202 GCGGGTTACA
Statistics
Matches: 107, Mismatches: 14, Indels: 18
0.77 0.10 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 62 0.58
47 26 0.24
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.23, C:0.20, G:0.27, T:0.30
Consensus pattern (46 bp):
TCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:58362187 original size:93 final size:93
Alignment explanation
Indices: 58362023--58362193 Score: 261
Period size: 93 Copynumber: 1.8 Consensus size: 93
58362013 GGATGGTTGA
* * ** *
58362023 GCATCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCGAATGTTCGAACTCGTTGAGT
1 GCATCCGAACTCATTGAGTTGAGTCCAAGTTCACTTATGGATGCGAACGCCCGAACTCATTGAGT
*
58362088 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TAAGTCCGAGTTCGTGAGATGTAACTAG
* * *
58362116 GCATCCGAGCTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCATTGAGT
1 GCATCCGAACTCATTGAGTTGAGTCCAAGTTCACTTATGGATGCGAACGCCCGAACTCATTGAGT
58362181 TAAGTCCGAGTTC
66 TAAGTCCGAGTTC
58362194 ACTTATGGGC
Statistics
Matches: 69, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
93 69 1.00
ACGTcount: A:0.23, C:0.21, G:0.27, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCATTGAGTTGAGTCCAAGTTCACTTATGGATGCGAACGCCCGAACTCATTGAGT
TAAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:58364083 original size:21 final size:19
Alignment explanation
Indices: 58364041--58364079 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
58364031 GGACACGAGT
58364041 GTGTCCCTAGCACACGGGC
1 GTGTCCCTAGCACACGGGC
58364060 GTGTCCCTAGCACACGGGC
1 GTGTCCCTAGCACACGGGC
58364079 G
1 G
58364080 CGTGCTCTAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.15, C:0.36, G:0.33, T:0.15
Consensus pattern (19 bp):
GTGTCCCTAGCACACGGGC
Found at i:58369308 original size:27 final size:27
Alignment explanation
Indices: 58369273--58369325 Score: 65
Period size: 27 Copynumber: 2.0 Consensus size: 27
58369263 TATTTTGATA
58369273 ATGAATTTTA-AACT-TTTTATATTTTTC
1 ATGAATTTTATAA-TATTTTAT-TTTTTC
*
58369300 ATGACTTTTATAATATTTTATTTTTT
1 ATGAATTTTATAATATTTTATTTTTT
58369326 AAAATTTTAT
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
27 15 0.65
28 8 0.35
ACGTcount: A:0.28, C:0.06, G:0.04, T:0.62
Consensus pattern (27 bp):
ATGAATTTTATAATATTTTATTTTTTC
Found at i:58369457 original size:43 final size:43
Alignment explanation
Indices: 58369358--58369483 Score: 155
Period size: 43 Copynumber: 3.0 Consensus size: 43
58369348 CGTTTGCGGG
* * * * * *
58369358 AAAAGTGCCGCGAAAAGTCCTGGACTTTAGCAGTG-TTTTTAG
1 AAAAGCGCCGCTAAAAGTCCTGGTCTTTAGCGGCGTTTTTTAA
*
58369400 AAAAGCGCCACTAAAAGTCCTGGTCTTTAGCGGCGTTTTTTAA
1 AAAAGCGCCGCTAAAAGTCCTGGTCTTTAGCGGCGTTTTTTAA
* * *
58369443 AAAAGCGCCGCTAAAAGTCTTGGTCTTTAGTGGCATTTTTT
1 AAAAGCGCCGCTAAAAGTCCTGGTCTTTAGCGGCGTTTTTT
58369484 TTTCTGAAAA
Statistics
Matches: 72, Mismatches: 11, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
42 29 0.40
43 43 0.60
ACGTcount: A:0.27, C:0.18, G:0.23, T:0.32
Consensus pattern (43 bp):
AAAAGCGCCGCTAAAAGTCCTGGTCTTTAGCGGCGTTTTTTAA
Found at i:58376848 original size:32 final size:31
Alignment explanation
Indices: 58376751--58376848 Score: 76
Period size: 32 Copynumber: 3.2 Consensus size: 31
58376741 CATATTAATA
* *
58376751 AAATCCTATTTAGATAAATATTAAATTAAATT
1 AAATACTATCTAGATAAATATTAAA-TAAATT
* * * * * *
58376783 TAATA-TCTCATA-TTAAA-ATTGAATTAATA
1 AAATACTATC-TAGATAAATATTAAATAAATT
58376812 AAATACTATCTAGATAAATATTAAATCAAATT
1 AAATACTATCTAGATAAATATTAAAT-AAATT
58376844 AAATA
1 AAATA
58376849 TTAAATTCAT
Statistics
Matches: 47, Mismatches: 14, Indels: 10
0.66 0.20 0.14
Matches are distributed among these distances:
29 10 0.21
30 12 0.26
31 12 0.26
32 13 0.28
ACGTcount: A:0.52, C:0.07, G:0.03, T:0.38
Consensus pattern (31 bp):
AAATACTATCTAGATAAATATTAAATAAATT
Found at i:58379617 original size:42 final size:46
Alignment explanation
Indices: 58379525--58379632 Score: 127
Period size: 45 Copynumber: 2.5 Consensus size: 46
58379515 AGGATCCAGG
*
58379525 AGCCATGAAAAATATCTTG-GGGAACCAAGGAGGAGATGTACACGC
1 AGCCATGAAAAATATCTTGTGGGAACCAAGGAGGAGATGTACACAC
* * * *
58379570 TGCCATGAAAAATATCTTGTGGG-ATCAAGGA-GATA-G-ACTCAC
1 AGCCATGAAAAATATCTTGTGGGAACCAAGGAGGAGATGTACACAC
*
58379612 AGCCATGTAAAATATCTTGTG
1 AGCCATGAAAAATATCTTGTG
58379633 CACCCAGTGC
Statistics
Matches: 55, Mismatches: 7, Indels: 5
0.82 0.10 0.07
Matches are distributed among these distances:
42 23 0.42
43 1 0.02
44 3 0.05
45 25 0.45
46 3 0.05
ACGTcount: A:0.36, C:0.17, G:0.25, T:0.22
Consensus pattern (46 bp):
AGCCATGAAAAATATCTTGTGGGAACCAAGGAGGAGATGTACACAC
Found at i:58380776 original size:33 final size:36
Alignment explanation
Indices: 58380718--58380783 Score: 102
Period size: 33 Copynumber: 1.9 Consensus size: 36
58380708 AAAAATTGAA
*
58380718 TTAATTATAAATAAATAAATTTAAAATATTTATCAT
1 TTAATTATAAATAAATAAATTTAAAATAATTATCAT
58380754 TTAA-TAT-AATAAAT-AATTTAAAATAATTAT
1 TTAATTATAAATAAATAAATTTAAAATAATTAT
58380784 ATAATTAATT
Statistics
Matches: 29, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
33 15 0.52
34 7 0.24
35 3 0.10
36 4 0.14
ACGTcount: A:0.55, C:0.02, G:0.00, T:0.44
Consensus pattern (36 bp):
TTAATTATAAATAAATAAATTTAAAATAATTATCAT
Found at i:58380792 original size:34 final size:35
Alignment explanation
Indices: 58380716--58380792 Score: 97
Period size: 34 Copynumber: 2.2 Consensus size: 35
58380706 ATAAAAATTG
58380716 AATTAATTATAAATAAATAAATTTAAAATATTTATC
1 AATTAA-TATAAATAAATAAATTTAAAATATTTATC
*
58380752 ATTTAATAT-AATAAAT-AATTTAAAATAATTATAT-
1 AATTAATATAAATAAATAAATTTAAAAT-ATT-TATC
58380786 AATTAAT
1 AATTAAT
58380793 TAGAATATTT
Statistics
Matches: 37, Mismatches: 2, Indels: 6
0.82 0.04 0.13
Matches are distributed among these distances:
33 10 0.27
34 16 0.43
35 6 0.16
36 5 0.14
ACGTcount: A:0.56, C:0.01, G:0.00, T:0.43
Consensus pattern (35 bp):
AATTAATATAAATAAATAAATTTAAAATATTTATC
Found at i:58387277 original size:28 final size:27
Alignment explanation
Indices: 58387245--58387299 Score: 92
Period size: 27 Copynumber: 2.0 Consensus size: 27
58387235 TACTACTTTT
58387245 CATGTACTTTCAAAATTTAGATATATTA
1 CATGTACTTTC-AAATTTAGATATATTA
*
58387273 CATGTACTTTCAAATTTAGATTTATTA
1 CATGTACTTTCAAATTTAGATATATTA
58387300 TTATTGTTGT
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
27 15 0.58
28 11 0.42
ACGTcount: A:0.36, C:0.11, G:0.07, T:0.45
Consensus pattern (27 bp):
CATGTACTTTCAAATTTAGATATATTA
Found at i:58387314 original size:15 final size:15
Alignment explanation
Indices: 58387294--58387334 Score: 55
Period size: 15 Copynumber: 2.7 Consensus size: 15
58387284 AAATTTAGAT
* *
58387294 TTATTATTATTGTTG
1 TTATTATTATTGATA
58387309 TTATTATTATTGATA
1 TTATTATTATTGATA
*
58387324 TCATTATTATT
1 TTATTATTATT
58387335 TGCATTATTA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
15 23 1.00
ACGTcount: A:0.27, C:0.02, G:0.07, T:0.63
Consensus pattern (15 bp):
TTATTATTATTGATA
Found at i:58387559 original size:25 final size:25
Alignment explanation
Indices: 58387530--58387579 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
58387520 AATCTACTCG
58387530 TATATCATTTTTAAATATTTCACCA
1 TATATCATTTTTAAATATTTCACCA
58387555 TATATCATTTTTAAATATTTCACCA
1 TATATCATTTTTAAATATTTCACCA
58387580 ACTTTCACCA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.36, C:0.16, G:0.00, T:0.48
Consensus pattern (25 bp):
TATATCATTTTTAAATATTTCACCA
Found at i:58391955 original size:19 final size:19
Alignment explanation
Indices: 58391912--58391955 Score: 52
Period size: 19 Copynumber: 2.3 Consensus size: 19
58391902 AAACAATATA
*
58391912 AAAAATTCAAAATAATTAT
1 AAAAATCCAAAATAATTAT
** *
58391931 TTAAATCCAAAATATTTAT
1 AAAAATCCAAAATAATTAT
58391950 AAAAAT
1 AAAAAT
58391956 TTCAAAAATA
Statistics
Matches: 19, Mismatches: 6, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.59, C:0.07, G:0.00, T:0.34
Consensus pattern (19 bp):
AAAAATCCAAAATAATTAT
Found at i:58392064 original size:21 final size:21
Alignment explanation
Indices: 58392038--58392080 Score: 86
Period size: 21 Copynumber: 2.0 Consensus size: 21
58392028 TAAGTTAATA
58392038 ATGATTCAAGTTTATCATACT
1 ATGATTCAAGTTTATCATACT
58392059 ATGATTCAAGTTTATCATACT
1 ATGATTCAAGTTTATCATACT
58392080 A
1 A
58392081 AAGTATTTTT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.35, C:0.14, G:0.09, T:0.42
Consensus pattern (21 bp):
ATGATTCAAGTTTATCATACT
Found at i:58403975 original size:3 final size:3
Alignment explanation
Indices: 58403967--58403999 Score: 66
Period size: 3 Copynumber: 11.0 Consensus size: 3
58403957 TTTAAGCAAA
58403967 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG
58404000 GGATTTTTAG
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 30 1.00
ACGTcount: A:0.67, C:0.00, G:0.33, T:0.00
Consensus pattern (3 bp):
AAG
Found at i:58406995 original size:20 final size:21
Alignment explanation
Indices: 58406953--58406992 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
58406943 TGTACCCTTT
* *
58406953 TTCTATCATTTTTTTATAAAC
1 TTCTAACATTTTTCTATAAAC
58406974 TTCTAACATTTTTCTATAA
1 TTCTAACATTTTTCTATAA
58406993 CTTTTATTGA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.30, C:0.15, G:0.00, T:0.55
Consensus pattern (21 bp):
TTCTAACATTTTTCTATAAAC
Found at i:58407155 original size:19 final size:19
Alignment explanation
Indices: 58407133--58407227 Score: 61
Period size: 19 Copynumber: 4.9 Consensus size: 19
58407123 TTTTTGATGT
58407133 ATTTTATATTTTTTTTACG
1 ATTTTATATTTTTTTTACG
*** *
58407152 ATTTT-TATAAAATTTTACA
1 ATTTTATAT-TTTTTTTACG
* *
58407171 ATTTTTATAATATTTTTACG
1 A-TTTTATATTTTTTTTACG
*
58407191 ATTTTTTATTTTTTTCTA--
1 ATTTTATATTTTTTT-TACG
58407209 ATTTTTATATTTTTATTTA
1 A-TTTTATATTTTT-TTTA
58407228 AATTTAATAA
Statistics
Matches: 58, Mismatches: 12, Indels: 12
0.71 0.15 0.15
Matches are distributed among these distances:
18 4 0.07
19 36 0.62
20 16 0.28
21 2 0.03
ACGTcount: A:0.27, C:0.04, G:0.02, T:0.66
Consensus pattern (19 bp):
ATTTTATATTTTTTTTACG
Found at i:58407706 original size:17 final size:17
Alignment explanation
Indices: 58407684--58407728 Score: 56
Period size: 17 Copynumber: 2.6 Consensus size: 17
58407674 ATACAGTTCA
*
58407684 TATTTTTAGAAAACCTT
1 TATTTTTAGAAAAACTT
58407701 TA-TTTTAGTAAAAACTT
1 TATTTTTAG-AAAAACTT
58407718 TAGTTTTTAGA
1 TA-TTTTTAGA
58407729 TAATAGTCGC
Statistics
Matches: 24, Mismatches: 1, Indels: 5
0.80 0.03 0.17
Matches are distributed among these distances:
16 6 0.25
17 11 0.46
18 1 0.04
19 6 0.25
ACGTcount: A:0.36, C:0.07, G:0.09, T:0.49
Consensus pattern (17 bp):
TATTTTTAGAAAAACTT
Found at i:58408315 original size:15 final size:15
Alignment explanation
Indices: 58408289--58408333 Score: 58
Period size: 15 Copynumber: 3.1 Consensus size: 15
58408279 CCCAAATCAT
58408289 ATACAG-AA-AACAG
1 ATACAGAAATAACAG
*
58408302 ATATAGAAATAACAG
1 ATACAGAAATAACAG
*
58408317 ATACAGAAATACCAG
1 ATACAGAAATAACAG
58408332 AT
1 AT
58408334 TAAACACGCT
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
13 5 0.19
14 2 0.07
15 20 0.74
ACGTcount: A:0.58, C:0.13, G:0.13, T:0.16
Consensus pattern (15 bp):
ATACAGAAATAACAG
Found at i:58408635 original size:33 final size:33
Alignment explanation
Indices: 58408563--58408647 Score: 86
Period size: 33 Copynumber: 2.6 Consensus size: 33
58408553 TCGTGTGGCA
* * * *
58408563 TACCAGTGTGGGCCCATACGCCTAGATTGGCCT
1 TACCCGTGTGGGCCCATATGCCCAGATTAGCCT
58408596 TACCCGTGTGGGCCCATATGCCCA-ATTTAGCC-
1 TACCCGTGTGGGCCCATATGCCCAGA-TTAGCCT
*
58408628 TAGCCCGTAT-GGCCCATATG
1 TA-CCCGTGTGGGCCCATATG
58408648 GCCACCTACA
Statistics
Matches: 45, Mismatches: 5, Indels: 5
0.82 0.09 0.09
Matches are distributed among these distances:
32 13 0.29
33 32 0.71
ACGTcount: A:0.19, C:0.32, G:0.25, T:0.25
Consensus pattern (33 bp):
TACCCGTGTGGGCCCATATGCCCAGATTAGCCT
Found at i:58414870 original size:21 final size:18
Alignment explanation
Indices: 58414844--58414887 Score: 52
Period size: 21 Copynumber: 2.3 Consensus size: 18
58414834 TTTTAAAATT
58414844 ATAAAAGGATATAAATGAATA
1 ATAAAAGGATA-AAAT-AA-A
*
58414865 ATAAAATGATAAAATAAA
1 ATAAAAGGATAAAATAAA
58414883 ATAAA
1 ATAAA
58414888 TATTAGGTAA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
18 6 0.27
19 2 0.09
20 4 0.18
21 10 0.45
ACGTcount: A:0.68, C:0.00, G:0.09, T:0.23
Consensus pattern (18 bp):
ATAAAAGGATAAAATAAA
Found at i:58414900 original size:11 final size:11
Alignment explanation
Indices: 58414884--58414911 Score: 56
Period size: 11 Copynumber: 2.5 Consensus size: 11
58414874 TAAAATAAAA
58414884 TAAATATTAGG
1 TAAATATTAGG
58414895 TAAATATTAGG
1 TAAATATTAGG
58414906 TAAATA
1 TAAATA
58414912 AATACCAAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.50, C:0.00, G:0.14, T:0.36
Consensus pattern (11 bp):
TAAATATTAGG
Found at i:58416647 original size:44 final size:42
Alignment explanation
Indices: 58416597--58416699 Score: 125
Period size: 44 Copynumber: 2.4 Consensus size: 42
58416587 AATCTGACCT
* *
58416597 ACTGCAACTTCAGATGTATAGGATTTACCGCTTTAATCCGCTCC
1 ACTGCAACTTCAGAGGTA-AGG-TTTACAGCTTTAATCCGCTCC
* * *
58416641 ACTGCAACTTCAGGAAGGTAAGGTTTATAGCTTTAATCTGCTCT
1 ACTGCAACTTCA-G-AGGTAAGGTTTACAGCTTTAATCCGCTCC
58416685 ACTGCAACTTCAGAG
1 ACTGCAACTTCAGAG
58416700 AGATAAGATT
Statistics
Matches: 52, Mismatches: 5, Indels: 6
0.83 0.08 0.10
Matches are distributed among these distances:
42 2 0.04
43 1 0.02
44 41 0.79
45 4 0.08
46 4 0.08
ACGTcount: A:0.27, C:0.23, G:0.18, T:0.31
Consensus pattern (42 bp):
ACTGCAACTTCAGAGGTAAGGTTTACAGCTTTAATCCGCTCC
Found at i:58416771 original size:89 final size:89
Alignment explanation
Indices: 58416637--58416800 Score: 213
Period size: 89 Copynumber: 1.8 Consensus size: 89
58416627 CTTTAATCCG
* * * * * * *
58416637 CTCCACTGCAACTTCAGGAAGGTAAGGTTTATAGCTTTAATCTGCTCTACTGCAACTTC-AGAGA
1 CTCCACTGCAACTTCAGGAAGATAAGATCTATAACTTCAACCTGCTCTACTGCAACTGCAAG-GA
58416701 GATAAGATTTGCTATAGTTAATCTA
65 GATAAGATTTGCTATAGTTAATCTA
* * *
58416726 CTCCACTGTAACTTCAGGGAGATAAGATCTATAACTTCAACCTGCTCTATTGCAACTGCAAGGAG
1 CTCCACTGCAACTTCAGGAAGATAAGATCTATAACTTCAACCTGCTCTACTGCAACTGCAAGGAG
*
58416791 ATAAGGTTTG
66 ATAAGATTTG
58416801 TAGTTATGGT
Statistics
Matches: 63, Mismatches: 11, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
89 61 0.97
90 2 0.03
ACGTcount: A:0.30, C:0.20, G:0.19, T:0.30
Consensus pattern (89 bp):
CTCCACTGCAACTTCAGGAAGATAAGATCTATAACTTCAACCTGCTCTACTGCAACTGCAAGGAG
ATAAGATTTGCTATAGTTAATCTA
Found at i:58417048 original size:89 final size:89
Alignment explanation
Indices: 58416935--58417454 Score: 525
Period size: 89 Copynumber: 5.9 Consensus size: 89
58416925 TAGGGAGATA
* * * * * *
58416935 ATCTACTCCACTGTAACTTTAGGGAGATAATACTTATAGCTTTATTCTGTTCTACTGCAACTTCA
1 ATCTACTCCACTGCAACTTCAGGGAGATAAGACTTATAGCTTTAATATGCTCTACTGCAACTTCA
* *
58417000 GAGAGATAATATTTACTATCTTTG
66 GAGAGATAAGATTTACTATCTTAG
* * * * *
58417024 ATCTACTCCACTGCAACTTCAGGGAGATAAGATTTATAACTTCAATTTGCTCCACTGCAACTTCA
1 ATCTACTCCACTGCAACTTCAGGGAGATAAGACTTATAGCTTTAATATGCTCTACTGCAACTTCA
* *
58417089 G-GAAGATAAGACTTA-TAGCTTTA-
66 GAG-AGATAAGATTTACTATC-TTAG
* * * * * * * * * * *
58417112 ATATGCTCTACTGCAACTTCAGAGAGACAAGATTTGCTATC-TTAGATCTACTCCACTGCAACTT
1 ATCTACTCCACTGCAACTTCAGGGAGATAAGACTT-ATAGCTTTA-ATATGCTCTACTGCAACTT
* *
58417176 CAGGGAGATAAGATTTA-TAACTTCA-
64 CAGAGAGATAAGATTTACTATCTT-AG
* * *
58417201 ATTTGCTCCACTGCAACTTCAGGAAGATAAGACTTATAGCTTTAATATGCTCTACTGCAACTTCA
1 ATCTACTCCACTGCAACTTCAGGGAGATAAGACTTATAGCTTTAATATGCTCTACTGCAACTTCA
* *
58417266 GAGAGACAAGATTTGCTATCTTAG
66 GAGAGATAAGATTTACTATCTTAG
*
58417290 ATCTACTCCACTGCAACTTCAGGAAGATAAGACTTATAGCTTTAATATGCTCTACTGCAACTTCA
1 ATCTACTCCACTGCAACTTCAGGGAGATAAGACTTATAGCTTTAATATGCTCTACTGCAACTTCA
* *
58417355 GAGAGACAAGATTTGCTATCTTAG
66 GAGAGATAAGATTTACTATCTTAG
* * * * * * * *
58417379 ATCTACTCCACTACAACTTTAAGGAGATAAGA-TCTATAACTTCAATATTCTCCACTACAACTTC
1 ATCTACTCCACTGCAACTTCAGGGAGATAAGACT-TATAGCTTTAATATGCTCTACTGCAACTTC
58417443 A-AGGAGATAAGA
65 AGA-GAGATAAGA
58417455 CTTTCTACTA
Statistics
Matches: 367, Mismatches: 53, Indels: 22
0.83 0.12 0.05
Matches are distributed among these distances:
88 74 0.20
89 292 0.80
90 1 0.00
ACGTcount: A:0.33, C:0.21, G:0.15, T:0.32
Consensus pattern (89 bp):
ATCTACTCCACTGCAACTTCAGGGAGATAAGACTTATAGCTTTAATATGCTCTACTGCAACTTCA
GAGAGATAAGATTTACTATCTTAG
Found at i:58417178 original size:133 final size:133
Alignment explanation
Indices: 58416940--58417355 Score: 679
Period size: 133 Copynumber: 3.1 Consensus size: 133
58416930 AGATAATCTA
* * * * * * *
58416940 CTCCACTGTAACTTTAGGGAGATAATACTTATAGCTTTATTCTGTTCTACTGCAACTTCAGAGAG
1 CTCCACTGCAACTTCAGGAAGATAAGACTTATAGCTTTAATATGCTCTACTGCAACTTCAGAGAG
* * * *
58417005 ATAATATTTACTATCTTTGATCTACTCCACTGCAACTTCAGGGAGATAAGATTTATAACTTCAAT
66 ACAAGATTTGCTATCTTAGATCTACTCCACTGCAACTTCAGGGAGATAAGATTTATAACTTCAAT
58417070 TTG
131 TTG
58417073 CTCCACTGCAACTTCAGGAAGATAAGACTTATAGCTTTAATATGCTCTACTGCAACTTCAGAGAG
1 CTCCACTGCAACTTCAGGAAGATAAGACTTATAGCTTTAATATGCTCTACTGCAACTTCAGAGAG
58417138 ACAAGATTTGCTATCTTAGATCTACTCCACTGCAACTTCAGGGAGATAAGATTTATAACTTCAAT
66 ACAAGATTTGCTATCTTAGATCTACTCCACTGCAACTTCAGGGAGATAAGATTTATAACTTCAAT
58417203 TTG
131 TTG
58417206 CTCCACTGCAACTTCAGGAAGATAAGACTTATAGCTTTAATATGCTCTACTGCAACTTCAGAGAG
1 CTCCACTGCAACTTCAGGAAGATAAGACTTATAGCTTTAATATGCTCTACTGCAACTTCAGAGAG
* * * *
58417271 ACAAGATTTGCTATCTTAGATCTACTCCACTGCAACTTCAGGAAGATAAGACTTATAGCTTTAAT
66 ACAAGATTTGCTATCTTAGATCTACTCCACTGCAACTTCAGGGAGATAAGATTTATAACTTCAAT
*
58417336 ATG
131 TTG
*
58417339 CTCTACTGCAACTTCAG
1 CTCCACTGCAACTTCAG
58417356 AGAGACAAGA
Statistics
Matches: 266, Mismatches: 17, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
133 266 1.00
ACGTcount: A:0.31, C:0.21, G:0.15, T:0.32
Consensus pattern (133 bp):
CTCCACTGCAACTTCAGGAAGATAAGACTTATAGCTTTAATATGCTCTACTGCAACTTCAGAGAG
ACAAGATTTGCTATCTTAGATCTACTCCACTGCAACTTCAGGGAGATAAGATTTATAACTTCAAT
TTG
Found at i:58417321 original size:222 final size:222
Alignment explanation
Indices: 58416935--58417457 Score: 725
Period size: 222 Copynumber: 2.4 Consensus size: 222
58416925 TAGGGAGATA
* * * * * * *
58416935 ATCTACTCCACTGTAACTTTAGGGAGATAATACTTATAGCTT-TATTCTGTTCTACTGCAACTTC
1 ATCTACTCCACTGCAACTTTAGGGAGATAAGATTTATAACTTCAATT-TGCTCCACTGCAACTTC
* * * * * * *
58416999 A-GAGAGATAATATTTACTATCTTTGATCTACTCCACTGCAACTTCAGGGAGATAAGATTTATAA
65 AGGA-AGATAAGACTTACTAGCTTTAATATACTCCACTGCAACTTCAGAGAGACAAGATTTATAA
* *
58417063 CTTCAATTTGCTCCACTGCAACTTCAGGAAGATAAGACTTATAGCTTTAATATGCTCTACTGCAA
129 CTTCAATCTACTCCACTGCAACTTCAGGAAGATAAGACTTATAGCTTTAATATGCTCTACTGCAA
58417128 CTTCAGAGAGACAAGATTTGCTATCTTAG
194 CTTCAGAGAGACAAGATTTGCTATCTTAG
*
58417157 ATCTACTCCACTGCAACTTCAGGGAGATAAGATTTATAACTTCAATTTGCTCCACTGCAACTTCA
1 ATCTACTCCACTGCAACTTTAGGGAGATAAGATTTATAACTTCAATTTGCTCCACTGCAACTTCA
* * * *
58417222 GGAAGATAAGACTTA-TAGCTTTAATATGCTCTACTGCAACTTCAGAGAGACAAGATTTGCTATC
66 GGAAGATAAGACTTACTAGCTTTAATATACTCCACTGCAACTTCAGAGAGACAAGATTT-ATAAC
58417286 TT-AGATCTACTCCACTGCAACTTCAGGAAGATAAGACTTATAGCTTTAATATGCTCTACTGCAA
130 TTCA-ATCTACTCCACTGCAACTTCAGGAAGATAAGACTTATAGCTTTAATATGCTCTACTGCAA
58417350 CTTCAGAGAGACAAGATTTGCTATCTTAG
194 CTTCAGAGAGACAAGATTTGCTATCTTAG
* * * *
58417379 ATCTACTCCACTACAACTTTAAGGAGATAAGATCTATAACTTCAATATT-CTCCACTACAACTTC
1 ATCTACTCCACTGCAACTTTAGGGAGATAAGATTTATAACTTCAAT-TTGCTCCACTGCAACTTC
58417443 AAGG-AGATAAGACTT
65 -AGGAAGATAAGACTT
58417458 TCTACTAAGA
Statistics
Matches: 269, Mismatches: 26, Indels: 12
0.88 0.08 0.04
Matches are distributed among these distances:
221 37 0.14
222 222 0.83
223 10 0.04
ACGTcount: A:0.33, C:0.21, G:0.15, T:0.32
Consensus pattern (222 bp):
ATCTACTCCACTGCAACTTTAGGGAGATAAGATTTATAACTTCAATTTGCTCCACTGCAACTTCA
GGAAGATAAGACTTACTAGCTTTAATATACTCCACTGCAACTTCAGAGAGACAAGATTTATAACT
TCAATCTACTCCACTGCAACTTCAGGAAGATAAGACTTATAGCTTTAATATGCTCTACTGCAACT
TCAGAGAGACAAGATTTGCTATCTTAG
Found at i:58429230 original size:11 final size:11
Alignment explanation
Indices: 58429214--58429241 Score: 56
Period size: 11 Copynumber: 2.5 Consensus size: 11
58429204 TAAAATAAAA
58429214 TAAATATTAGG
1 TAAATATTAGG
58429225 TAAATATTAGG
1 TAAATATTAGG
58429236 TAAATA
1 TAAATA
58429242 AATACGAAAC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.50, C:0.00, G:0.14, T:0.36
Consensus pattern (11 bp):
TAAATATTAGG
Found at i:58441690 original size:25 final size:25
Alignment explanation
Indices: 58441662--58441715 Score: 90
Period size: 25 Copynumber: 2.2 Consensus size: 25
58441652 AAATAATTTG
58441662 AAGAAACTTGTAAGAAGGGTATAGC
1 AAGAAACTTGTAAGAAGGGTATAGC
* *
58441687 AAGAAACTTGTAGGAAGGGTATAGG
1 AAGAAACTTGTAAGAAGGGTATAGC
58441712 AAGA
1 AAGA
58441716 GGGCTGGAGG
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
25 27 1.00
ACGTcount: A:0.44, C:0.06, G:0.31, T:0.19
Consensus pattern (25 bp):
AAGAAACTTGTAAGAAGGGTATAGC
Found at i:58448623 original size:16 final size:15
Alignment explanation
Indices: 58448592--58448631 Score: 53
Period size: 16 Copynumber: 2.6 Consensus size: 15
58448582 ATATTTATCT
*
58448592 AATTTGAAATTAATA
1 AATTTGAAAATAATA
58448607 AATTTGAATAATAATA
1 AATTTGAA-AATAATA
*
58448623 AAATTGAAA
1 AATTTGAAA
58448632 GCCTCCAATC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
15 9 0.41
16 13 0.59
ACGTcount: A:0.57, C:0.00, G:0.07, T:0.35
Consensus pattern (15 bp):
AATTTGAAAATAATA
Found at i:58449694 original size:46 final size:46
Alignment explanation
Indices: 58449622--58449711 Score: 162
Period size: 46 Copynumber: 2.0 Consensus size: 46
58449612 AATAATGTAC
* *
58449622 AAGCCCAATCTGAACTAGCCCAAACCCAAGACCCAAAACAGACCCA
1 AAGCACAATCTGAACCAGCCCAAACCCAAGACCCAAAACAGACCCA
58449668 AAGCACAATCTGAACCAGCCCAAACCCAAGACCCAAAACAGACC
1 AAGCACAATCTGAACCAGCCCAAACCCAAGACCCAAAACAGACC
58449712 TAACCCCTAA
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
46 42 1.00
ACGTcount: A:0.44, C:0.39, G:0.11, T:0.06
Consensus pattern (46 bp):
AAGCACAATCTGAACCAGCCCAAACCCAAGACCCAAAACAGACCCA
Found at i:58450886 original size:26 final size:23
Alignment explanation
Indices: 58450822--58450886 Score: 60
Period size: 28 Copynumber: 2.7 Consensus size: 23
58450812 ATATTTCTTT
*
58450822 TATATATAAATATA-TTTTTCTA
1 TATATATACATATACTTTTTCTA
*
58450844 TATATTTACATGCATACTTTTTGTACTA
1 TATATATACAT--ATAC-TTTT-T-CTA
58450872 TATATATACATATAC
1 TATATATACATATAC
58450887 ACTTATTTTT
Statistics
Matches: 34, Mismatches: 3, Indels: 8
0.76 0.07 0.18
Matches are distributed among these distances:
22 9 0.26
24 3 0.09
26 8 0.24
27 1 0.03
28 13 0.38
ACGTcount: A:0.37, C:0.11, G:0.03, T:0.49
Consensus pattern (23 bp):
TATATATACATATACTTTTTCTA
Found at i:58451310 original size:5 final size:5
Alignment explanation
Indices: 58451296--58451324 Score: 51
Period size: 5 Copynumber: 6.0 Consensus size: 5
58451286 ACATAAGTGC
58451296 TTTA- TTTAT TTTAT TTTAT TTTAT TTTAT
1 TTTAT TTTAT TTTAT TTTAT TTTAT TTTAT
58451325 ATTGTTTCAC
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
4 4 0.17
5 20 0.83
ACGTcount: A:0.21, C:0.00, G:0.00, T:0.79
Consensus pattern (5 bp):
TTTAT
Found at i:58454683 original size:26 final size:26
Alignment explanation
Indices: 58454604--58454697 Score: 77
Period size: 26 Copynumber: 3.7 Consensus size: 26
58454594 AAGCAATTTT
* *
58454604 AAATAAATAATACATAAAATAGTTTA
1 AAATAAATAATATATAAAATTGTTTA
* * * * ***
58454630 AAAGAACTAATATGTTTAAA-TACCTA
1 AAATAAATAATAT-ATAAAATTGTTTA
58454656 AAATAAATAATATATAAAATTGTTTA
1 AAATAAATAATATATAAAATTGTTTA
58454682 AAAT-AAT-ATATATAAA
1 AAATAAATAATATATAAA
58454698 TAATAAATAA
Statistics
Matches: 50, Mismatches: 16, Indels: 6
0.69 0.22 0.08
Matches are distributed among these distances:
24 9 0.18
25 7 0.14
26 30 0.60
27 4 0.08
ACGTcount: A:0.59, C:0.04, G:0.04, T:0.33
Consensus pattern (26 bp):
AAATAAATAATATATAAAATTGTTTA
Found at i:58454698 original size:48 final size:51
Alignment explanation
Indices: 58454604--58454699 Score: 126
Period size: 52 Copynumber: 1.9 Consensus size: 51
58454594 AAGCAATTTT
* *
58454604 AAATAAATAATACATAAAATAGTTTAAAAGAACTAATATGTTTAAATACCTA
1 AAATAAATAATACATAAAATAGTTT-AAAGAACTAATATATATAAATACCTA
* *
58454656 AAATAAATAATATATAAAATTGTTT-AA-AA-TAATATATATAAATA
1 AAATAAATAATACATAAAATAGTTTAAAGAACTAATATATATAAATA
58454700 ATAAATAAGC
Statistics
Matches: 40, Mismatches: 4, Indels: 4
0.83 0.08 0.08
Matches are distributed among these distances:
48 13 0.32
49 2 0.05
50 2 0.05
52 23 0.57
ACGTcount: A:0.58, C:0.04, G:0.04, T:0.33
Consensus pattern (51 bp):
AAATAAATAATACATAAAATAGTTTAAAGAACTAATATATATAAATACCTA
Found at i:58456438 original size:45 final size:45
Alignment explanation
Indices: 58456389--58456527 Score: 129
Period size: 45 Copynumber: 3.1 Consensus size: 45
58456379 CTTTAGGAAA
* *
58456389 ATAAGATTTGCTATCTTCAGTCTAC-ACATTTGCAACTTCAAGGAG
1 ATAAGATTTGCTATCTTCAATCTACTACA-CTGCAACTTCAAGGAG
** * * * *
58456434 ATAAGATTTG-TGGCTTCAATCTGCTCCACTGCAACTTTAGGGAG
1 ATAAGATTTGCTATCTTCAATCTACTACACTGCAACTTCAAGGAG
* * * * **
58456478 ATAAGATTTGCTATCTTCAACCTGCTCCATTAAAACTTCAAGGAG
1 ATAAGATTTGCTATCTTCAATCTACTACACTGCAACTTCAAGGAG
58456523 ATAAG
1 ATAAG
58456528 GTTAATGGCT
Statistics
Matches: 76, Mismatches: 16, Indels: 4
0.79 0.17 0.04
Matches are distributed among these distances:
44 33 0.43
45 43 0.57
ACGTcount: A:0.31, C:0.20, G:0.17, T:0.32
Consensus pattern (45 bp):
ATAAGATTTGCTATCTTCAATCTACTACACTGCAACTTCAAGGAG
Found at i:58456469 original size:44 final size:44
Alignment explanation
Indices: 58456419--58456574 Score: 177
Period size: 44 Copynumber: 3.5 Consensus size: 44
58456409 TCTACACATT
58456419 TGCAACTTCAAGGAGATAAGATTTGTGGCTTCAATCTGCTCCAC
1 TGCAACTTCAAGGAGATAAGATTTGTGGCTTCAATCTGCTCCAC
* * ** * *
58456463 TGCAACTTTAGGGAGATAAGATTTGCTATCTTCAACCTGCTCCAT
1 TGCAACTTCAAGGAGATAAGATTTG-TGGCTTCAATCTGCTCCAC
** * ** * *
58456508 TAAAACTTCAAGGAGATAAGGTTAATGGCTTCCATCTGCTCTAC
1 TGCAACTTCAAGGAGATAAGATTTGTGGCTTCAATCTGCTCCAC
*
58456552 TGCAACTTCAGGGAGATAAGATT
1 TGCAACTTCAAGGAGATAAGATT
58456575 CGCCATGATA
Statistics
Matches: 88, Mismatches: 23, Indels: 2
0.78 0.20 0.02
Matches are distributed among these distances:
44 55 0.62
45 33 0.38
ACGTcount: A:0.29, C:0.21, G:0.20, T:0.30
Consensus pattern (44 bp):
TGCAACTTCAAGGAGATAAGATTTGTGGCTTCAATCTGCTCCAC
Found at i:58456471 original size:89 final size:89
Alignment explanation
Indices: 58456374--58456574 Score: 260
Period size: 89 Copynumber: 2.3 Consensus size: 89
58456364 TCTTCTTCCT
* * ** **
58456374 TGCAACTTTAGGAAAATAAGATTTGCTATCTTCAGTCTAC-ACATTTGCAACTTCAAGGAGATAA
1 TGCAACTTTAGGGAGATAAGATTTGCTATCTTCAACCTACTACA-TTAAAACTTCAAGGAGATAA
**
58456438 GATTTGTGGCTTCAATCTGCTCCAC
65 GATTAATGGCTTCAATCTGCTCCAC
* *
58456463 TGCAACTTTAGGGAGATAAGATTTGCTATCTTCAACCTGCTCCATTAAAACTTCAAGGAGATAAG
1 TGCAACTTTAGGGAGATAAGATTTGCTATCTTCAACCTACTACATTAAAACTTCAAGGAGATAAG
* * *
58456528 GTTAATGGCTTCCATCTGCTCTAC
66 ATTAATGGCTTCAATCTGCTCCAC
*
58456552 TGCAACTTCAGGGAGATAAGATT
1 TGCAACTTTAGGGAGATAAGATT
58456575 CGCCATGATA
Statistics
Matches: 97, Mismatches: 14, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
89 95 0.98
90 2 0.02
ACGTcount: A:0.30, C:0.20, G:0.18, T:0.31
Consensus pattern (89 bp):
TGCAACTTTAGGGAGATAAGATTTGCTATCTTCAACCTACTACATTAAAACTTCAAGGAGATAAG
ATTAATGGCTTCAATCTGCTCCAC
Found at i:58456877 original size:94 final size:94
Alignment explanation
Indices: 58456767--58456953 Score: 266
Period size: 94 Copynumber: 2.0 Consensus size: 94
58456757 TAAGGTTCGT
* * * *
58456767 GGCTTTAATCTACTCCACTGCAACTTAAAGGAGATAAGATTTGCCATGATAAATTTGATATACTC
1 GGCTTCAATCTACTCCACCGCAACTTAAAGGAGATAAGATTGGCCATGATAAATTCGATATACTC
*
58456832 CACTACGACTTCAAGGAGATAAAATTTGC
66 CACTACAACTTCAAGGAGATAAAATTTGC
* * * * *
58456861 GGCTTCAATCTGCTCCACCGCAACTTCAGGGAGATAAGATTGGCCATGATAACTTCGATATGCTC
1 GGCTTCAATCTACTCCACCGCAACTTAAAGGAGATAAGATTGGCCATGATAAATTCGATATACTC
* *
58456926 CACTGCAACTTCAGGGAGATAAAATTTG
66 CACTACAACTTCAAGGAGATAAAATTTG
58456954 TGATTTCTTT
Statistics
Matches: 81, Mismatches: 12, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
94 81 1.00
ACGTcount: A:0.32, C:0.21, G:0.19, T:0.28
Consensus pattern (94 bp):
GGCTTCAATCTACTCCACCGCAACTTAAAGGAGATAAGATTGGCCATGATAAATTCGATATACTC
CACTACAACTTCAAGGAGATAAAATTTGC
Found at i:58456946 original size:50 final size:50
Alignment explanation
Indices: 58456779--58456953 Score: 173
Period size: 50 Copynumber: 3.6 Consensus size: 50
58456769 CTTTAATCTA
* * * *
58456779 CTCCACTGCAACTTAAAGGAGATAAGATTTGCCATGATAAATTTGATATA
1 CTCCACTGCAACTTCAAGGAGATAAGATTTGCCATGATAACTTCGATATG
* * * * * *
58456829 CTCCACTACGACTTCAAGGAGATAAAATTTG-C--G---GCTTCAATCTG
1 CTCCACTGCAACTTCAAGGAGATAAGATTTGCCATGATAACTTCGATATG
* * *
58456873 CTCCACCGCAACTTCAGGGAGATAAGATTGGCCATGATAACTTCGATATG
1 CTCCACTGCAACTTCAAGGAGATAAGATTTGCCATGATAACTTCGATATG
* *
58456923 CTCCACTGCAACTTCAGGGAGATAAAATTTG
1 CTCCACTGCAACTTCAAGGAGATAAGATTTG
58456954 TGATTTCTTT
Statistics
Matches: 97, Mismatches: 22, Indels: 12
0.74 0.17 0.09
Matches are distributed among these distances:
44 30 0.31
45 1 0.01
47 2 0.02
49 1 0.01
50 63 0.65
ACGTcount: A:0.33, C:0.22, G:0.19, T:0.27
Consensus pattern (50 bp):
CTCCACTGCAACTTCAAGGAGATAAGATTTGCCATGATAACTTCGATATG
Found at i:58456999 original size:46 final size:46
Alignment explanation
Indices: 58456925--58457051 Score: 159
Period size: 46 Copynumber: 2.7 Consensus size: 46
58456915 TCGATATGCT
* * * *
58456925 CCACTGCAACTTCAGGGAGATAAAATTTGTGAT-TTCTTTC-ATCCATC
1 CCACTACAAC-TCAGGGATATAAGATTTGT-ATCATC-TTCAATCCATC
*
58456972 CCACTACAACTCAGGGATATAGGATTTGTATCATCTTCAATCCATC
1 CCACTACAACTCAGGGATATAAGATTTGTATCATCTTCAATCCATC
*
58457018 CCACTACAACTCAGGGGTATAAGATTTGTATCAT
1 CCACTACAACTCAGGGATATAAGATTTGTATCAT
58457052 TGATCTATTG
Statistics
Matches: 71, Mismatches: 7, Indels: 5
0.86 0.08 0.06
Matches are distributed among these distances:
45 5 0.07
46 57 0.80
47 9 0.13
ACGTcount: A:0.30, C:0.24, G:0.15, T:0.31
Consensus pattern (46 bp):
CCACTACAACTCAGGGATATAAGATTTGTATCATCTTCAATCCATC
Found at i:58460015 original size:13 final size:12
Alignment explanation
Indices: 58459997--58460037 Score: 55
Period size: 13 Copynumber: 3.2 Consensus size: 12
58459987 AATTTTAAAA
58459997 TTTTTATAACTTT
1 TTTTTATAA-TTT
58460010 TTTTTATAAATTT
1 TTTTTAT-AATTT
*
58460023 TGTTTATAATTT
1 TTTTTATAATTT
58460035 TTT
1 TTT
58460038 AATTTTAAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
12 7 0.28
13 16 0.64
14 2 0.08
ACGTcount: A:0.24, C:0.02, G:0.02, T:0.71
Consensus pattern (12 bp):
TTTTTATAATTT
Found at i:58461939 original size:26 final size:26
Alignment explanation
Indices: 58461910--58462071 Score: 279
Period size: 26 Copynumber: 6.2 Consensus size: 26
58461900 TGGTACAAAT
58461910 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
58461936 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
58461962 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
58461988 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
58462014 TGATAATAGGTTAGGTAAATGTTCGA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
58462040 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTCCA
58462066 TGATAA
1 TGATAA
58462072 GAATTTCATG
Statistics
Matches: 127, Mismatches: 9, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 127 1.00
ACGTcount: A:0.33, C:0.06, G:0.25, T:0.35
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:58470295 original size:72 final size:73
Alignment explanation
Indices: 58470146--58470295 Score: 221
Period size: 72 Copynumber: 2.1 Consensus size: 73
58470136 TTTTCTTTTA
* * *
58470146 ATTTTTGAAGGCAAAAAGTGTATTTGGATAAAACAAAGAATAAATTTAAATAATTAAATTAACAA
1 ATTTTTGAAGGCAAAAACTGTATTGGGATAAAACAAAGAACAAATTTAAATAATTAAATTAACAA
*
58470211 GATATGTG
66 GATATATG
* **
58470219 ATTTTTGAAGGCAAAAACTGTATTGGGATAAAAC-AAGAACAAATTTAAATAATTGAATTATGAA
1 ATTTTTGAAGGCAAAAACTGTATTGGGATAAAACAAAGAACAAATTTAAATAATTAAATTAACAA
*
58470283 GATATATT
66 GATATATG
58470291 ATTTT
1 ATTTT
58470296 AATTTATATG
Statistics
Matches: 69, Mismatches: 8, Indels: 1
0.88 0.10 0.01
Matches are distributed among these distances:
72 37 0.54
73 32 0.46
ACGTcount: A:0.47, C:0.05, G:0.15, T:0.33
Consensus pattern (73 bp):
ATTTTTGAAGGCAAAAACTGTATTGGGATAAAACAAAGAACAAATTTAAATAATTAAATTAACAA
GATATATG
Found at i:58475937 original size:131 final size:133
Alignment explanation
Indices: 58475567--58476086 Score: 504
Period size: 131 Copynumber: 4.0 Consensus size: 133
58475557 TGATTATACA
* * * *
58475567 TTTAAAAATTCTTTAAAACGAAGACAAGATTCGATATTTGGCAATTCGCGGAAT-AGTGCCCTAA
1 TTTAAAAATCCTTTAAAACGAAGGCAATATTCGATATTTGGCAATTCGCAGAATCA-TGCCCTAA
* * * * *
58475631 TGTGTTGGGTTGCAATTTCGCGTTTGCTCGAAATAATCGAATATCCCTTC-AAACTTTCACTCAT
65 TGTGCTGGGTTGCAATTTCTCGTTTGCTCAAAACAATCGAATATCCCTTCGAGACTTTCACTCAT
*
58475695 GCCT
130 GTCT
* * *
58475699 TTTAAAAATTCTTTAAAACGAAGGCAA-AGTTCGATATTTGGCAATTCGCAGAATCGTACCCTAA
1 TTTAAAAATCCTTTAAAACGAAGGCAATA-TTCGATATTTGGCAATTCGCAGAATCATGCCCTAA
* * * * * *
58475763 TGTGTTGGGTTGCAATTTCTCGTTTGCTCAAAATAATCAAATATCCCTTCGAGA-TTCCATTCAG
65 TGTGCTGGGTTGCAATTTCTCGTTTGCTCAAAACAATCGAATATCCCTTCGAGACTTTCACTCAT
58475827 GTCT
130 GTCT
* * *** * *
58475831 TCTAAAAATCCTCTAAAACGAAGGCAATATTCGGCGTTTGACAATTCG-GGAATCATGCCCT-AT
1 TTTAAAAATCCTTTAAAACGAAGGCAATATTCGATATTTGGCAATTCGCAGAATCATGCCCTAAT
** * * * * *
58475894 CGTGCTGGGTTATAATTTCTCGTTTGTTCAAAACGATCGAATATTCCTT-TAGATTTTCACTCAT
66 -GTGCTGGGTTGCAATTTCTCGTTTGCTCAAAACAATCGAATATCCCTTCGAGACTTTCACTCAT
58475958 GT-T
130 GTCT
* * * * * * *
58475961 TATTAAAAACCCTTTAAAACAAAAGCTATGTTCGATGTTTGGCAATTCG-AGAATCGTGCCCT-A
1 T-TTAAAAATCCTTTAAAACGAAGGCAATATTCGATATTTGGCAATTCGCAGAATCATGCCCTAA
* * * * * *
58476024 TCGCGCTGGGTTGCAATCTCTCGTTTGTTCTAAACAATCGAATATCTCTTCGA-AATTTCACTC
65 T-GTGCTGGGTTGCAATTTCTCGTTTGCTCAAAACAATCGAATATCCCTTCGAGACTTTCACTC
58476087 GTATTTTCTA
Statistics
Matches: 324, Mismatches: 56, Indels: 17
0.82 0.14 0.04
Matches are distributed among these distances:
130 7 0.02
131 160 0.49
132 154 0.48
133 3 0.01
ACGTcount: A:0.29, C:0.20, G:0.17, T:0.34
Consensus pattern (133 bp):
TTTAAAAATCCTTTAAAACGAAGGCAATATTCGATATTTGGCAATTCGCAGAATCATGCCCTAAT
GTGCTGGGTTGCAATTTCTCGTTTGCTCAAAACAATCGAATATCCCTTCGAGACTTTCACTCATG
TCT
Found at i:58477248 original size:15 final size:15
Alignment explanation
Indices: 58477225--58477255 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
58477215 AAAACATATC
58477225 AATTAAACTTAATCA
1 AATTAAACTTAATCA
*
58477240 AATTTAACTTAATCA
1 AATTAAACTTAATCA
58477255 A
1 A
58477256 CCATTCACCT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.52, C:0.13, G:0.00, T:0.35
Consensus pattern (15 bp):
AATTAAACTTAATCA
Found at i:58483220 original size:28 final size:26
Alignment explanation
Indices: 58483189--58483252 Score: 83
Period size: 26 Copynumber: 2.4 Consensus size: 26
58483179 AATTACTATA
*
58483189 ATACCCCTATGTATGGAAAATTACCGTT
1 ATACCCCTA-G-ATGCAAAATTACCGTT
* *
58483217 ATACCCTTAGGTGCAAAATTACCGTT
1 ATACCCCTAGATGCAAAATTACCGTT
58483243 ATACCCCTAG
1 ATACCCCTAG
58483253 GGTTAATTTT
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
26 23 0.72
27 1 0.03
28 8 0.25
ACGTcount: A:0.31, C:0.25, G:0.14, T:0.30
Consensus pattern (26 bp):
ATACCCCTAGATGCAAAATTACCGTT
Found at i:58483397 original size:27 final size:27
Alignment explanation
Indices: 58483356--58483496 Score: 167
Period size: 27 Copynumber: 5.2 Consensus size: 27
58483346 GAGGAAGCGT
*
58483356 TCTGGTGGCTATGCCACAAATATCTGA
1 TCTGGTGGCTCTGCCACAAATATCTGA
58483383 TCTGGTGGCTCTGCCACAAATATCTGA
1 TCTGGTGGCTCTGCCACAAATATCTGA
* *
58483410 TCTGGTGGCTCTGCCACATATATCTGT
1 TCTGGTGGCTCTGCCACAAATATCTGA
* * *
58483437 TTTGGTGGCTCTGCCACGATTATCTGTA
1 TCTGGTGGCTCTGCCACAAATATCTG-A
* * * * *
58483465 TCCGGTGACTCTGTCAC-ATTATCTGT
1 TCTGGTGGCTCTGCCACAAATATCTGA
58483491 TCTGGT
1 TCTGGT
58483497 AGCCATGCTG
Statistics
Matches: 99, Mismatches: 14, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
26 5 0.05
27 81 0.82
28 13 0.13
ACGTcount: A:0.18, C:0.24, G:0.23, T:0.35
Consensus pattern (27 bp):
TCTGGTGGCTCTGCCACAAATATCTGA
Found at i:58483443 original size:54 final size:55
Alignment explanation
Indices: 58483356--58483496 Score: 187
Period size: 54 Copynumber: 2.6 Consensus size: 55
58483346 GAGGAAGCGT
* * *
58483356 TCTGGTGGCTATGCCACAAATATCTGATCTGGTGGCTCTGCCACAAATATCTG-A
1 TCTGGTGGCTCTGCCACATATATCTGTTCTGGTGGCTCTGCCACAAATATCTGTA
* * *
58483410 TCTGGTGGCTCTGCCACATATATCTGTTTTGGTGGCTCTGCCACGATTATCTGTA
1 TCTGGTGGCTCTGCCACATATATCTGTTCTGGTGGCTCTGCCACAAATATCTGTA
* * *
58483465 TCCGGTGACTCTGTCACAT-TATCTGTTCTGGT
1 TCTGGTGGCTCTGCCACATATATCTGTTCTGGT
58483497 AGCCATGCTG
Statistics
Matches: 76, Mismatches: 10, Indels: 2
0.86 0.11 0.02
Matches are distributed among these distances:
54 59 0.78
55 17 0.22
ACGTcount: A:0.18, C:0.24, G:0.23, T:0.35
Consensus pattern (55 bp):
TCTGGTGGCTCTGCCACATATATCTGTTCTGGTGGCTCTGCCACAAATATCTGTA
Found at i:58484582 original size:19 final size:18
Alignment explanation
Indices: 58484560--58484598 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 18
58484550 CATGTTCTCC
*
58484560 TTTTCCCTTTTCTTTGTTT
1 TTTTCCCTCTTCTTT-TTT
*
58484579 TTTTTCCTCTTCTTTTTT
1 TTTTCCCTCTTCTTTTTT
58484597 TT
1 TT
58484599 ATAAGTCGGA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
18 5 0.28
19 13 0.72
ACGTcount: A:0.00, C:0.21, G:0.03, T:0.77
Consensus pattern (18 bp):
TTTTCCCTCTTCTTTTTT
Found at i:58487083 original size:14 final size:14
Alignment explanation
Indices: 58487066--58487144 Score: 69
Period size: 14 Copynumber: 5.7 Consensus size: 14
58487056 TTCCATTACT
58487066 TTATGTTATTATTA
1 TTATGTTATTATTA
58487080 TTATGTTATTATTA
1 TTATGTTATTATTA
58487094 -TA--TTATTATTA
1 TTATGTTATTATTA
* *
58487105 TTATTATTATTACTA
1 TTA-TGTTATTATTA
58487120 GTATATGTT-TTATTA
1 -T-TATGTTATTATTA
58487135 -TATGTGTATT
1 TTATGT-TATT
58487145 TATCTTGAAT
Statistics
Matches: 54, Mismatches: 3, Indels: 16
0.74 0.04 0.22
Matches are distributed among these distances:
11 9 0.17
12 7 0.13
13 3 0.06
14 16 0.30
15 13 0.24
16 4 0.07
17 2 0.04
ACGTcount: A:0.29, C:0.01, G:0.08, T:0.62
Consensus pattern (14 bp):
TTATGTTATTATTA
Found at i:58487088 original size:11 final size:10
Alignment explanation
Indices: 58487074--58487115 Score: 59
Period size: 11 Copynumber: 4.1 Consensus size: 10
58487064 CTTTATGTTA
58487074 TTATTATTAT
1 TTATTATTAT
58487084 GTTATTATTAT
1 -TTATTATTAT
58487095 ATTATTATTA-
1 -TTATTATTAT
58487105 TTATTATTAT
1 TTATTATTAT
58487115 T
1 T
58487116 ACTAGTATAT
Statistics
Matches: 29, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
9 9 0.31
10 1 0.03
11 19 0.66
ACGTcount: A:0.31, C:0.00, G:0.02, T:0.67
Consensus pattern (10 bp):
TTATTATTAT
Found at i:58487135 original size:3 final size:3
Alignment explanation
Indices: 58487071--58487116 Score: 69
Period size: 3 Copynumber: 16.0 Consensus size: 3
58487061 TTACTTTATG
*
58487071 TTA TTA TTA TTA -TG TTA TTA TTA -TA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
58487117 CTAGTATATG
Statistics
Matches: 39, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
2 3 0.08
3 36 0.92
ACGTcount: A:0.33, C:0.00, G:0.02, T:0.65
Consensus pattern (3 bp):
TTA
Found at i:58487340 original size:28 final size:31
Alignment explanation
Indices: 58487282--58487360 Score: 85
Period size: 28 Copynumber: 2.7 Consensus size: 31
58487272 CATGTATTTT
* *
58487282 TTTTATTTTCTATATTTTATTATGTATATAC
1 TTTTAATTTCTATATTTTATTATATATATAC
58487313 TTTTAATTT-TATA-TTT-TTATATATATAC
1 TTTTAATTTCTATATTTTATTATATATATAC
* * *
58487341 TCTTAA-TACCATATTTTATT
1 TTTTAATTTCTATATTTTATT
58487361 TATTATTTTC
Statistics
Matches: 40, Mismatches: 5, Indels: 7
0.77 0.10 0.13
Matches are distributed among these distances:
27 1 0.03
28 19 0.47
29 6 0.15
30 6 0.15
31 8 0.20
ACGTcount: A:0.29, C:0.08, G:0.01, T:0.62
Consensus pattern (31 bp):
TTTTAATTTCTATATTTTATTATATATATAC
Found at i:58487737 original size:27 final size:28
Alignment explanation
Indices: 58487681--58487740 Score: 77
Period size: 27 Copynumber: 2.2 Consensus size: 28
58487671 CCATCTTATG
* *
58487681 TATATATTTTTAAATACTATATTGTATA
1 TATATATTCTTAAATACCATATTGTATA
* *
58487709 TATATATTCTT-AATGCCATATTGTGTA
1 TATATATTCTTAAATACCATATTGTATA
58487736 TATAT
1 TATAT
58487741 CATTATTACA
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
27 18 0.64
28 10 0.36
ACGTcount: A:0.35, C:0.07, G:0.07, T:0.52
Consensus pattern (28 bp):
TATATATTCTTAAATACCATATTGTATA
Found at i:58491724 original size:49 final size:50
Alignment explanation
Indices: 58491479--58491711 Score: 274
Period size: 49 Copynumber: 4.7 Consensus size: 50
58491469 ATCTATTATG
* * *
58491479 AGGTCACGTGTGTAGTACTAAGTGCAGGTTACTACGTGTACTGGATAATT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACTAGATAATT
* * * **
58491529 -GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGATAACTT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACTAGATAA-TT
* * * * **
58491579 CGATCACGTGTGTAGTACTAAGCGCAGGCTACTACGTGTA-TCAGATGGTT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACT-AGATAATT
* *
58491629 AGGTCACGTGTGTAATACTAAGTGCAGGCTACTACGTGTACTAGATAATT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACTAGATAATT
*
58491679 -GGTCGCATGTGTAGTACTAAGTGCAGGCTACTA
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTA
58491712 TGCGTAATAG
Statistics
Matches: 153, Mismatches: 26, Indels: 9
0.81 0.14 0.05
Matches are distributed among these distances:
49 70 0.46
50 46 0.30
51 37 0.24
ACGTcount: A:0.26, C:0.18, G:0.27, T:0.29
Consensus pattern (50 bp):
AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACTAGATAATT
Found at i:58499631 original size:43 final size:42
Alignment explanation
Indices: 58499583--58499729 Score: 134
Period size: 43 Copynumber: 3.4 Consensus size: 42
58499573 TCCTTGATAT
* *
58499583 GGTCTTACATGTTATCACGTATCGATGCCACTGTCCCACACAG
1 GGTCTTACACGTAATCACGTA-CGATGCCACTGTCCCACACAG
* * * * *
58499626 GGTCTTATACGAAATCGA-TTAACGATGCCAATGTCCCACACAT
1 GGTCTTACACGTAATC-ACGT-ACGATGCCACTGTCCCACACAG
* * * **
58499669 GGTCTTACACGTAATCATAGTACAATGCCACTATTTCACACAG
1 GGTCTTACACGTAATCA-CGTACGATGCCACTGTCCCACACAG
*
58499712 GGTCTTACATGTAATCAC
1 GGTCTTACACGTAATCAC
58499730 ATCTCAATAC
Statistics
Matches: 82, Mismatches: 18, Indels: 9
0.75 0.17 0.08
Matches are distributed among these distances:
42 1 0.01
43 78 0.95
44 3 0.04
ACGTcount: A:0.29, C:0.27, G:0.16, T:0.28
Consensus pattern (42 bp):
GGTCTTACACGTAATCACGTACGATGCCACTGTCCCACACAG
Found at i:58501836 original size:3 final size:3
Alignment explanation
Indices: 58501828--58501986 Score: 318
Period size: 3 Copynumber: 53.0 Consensus size: 3
58501818 TTTTGGTCAT
58501828 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA
1 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA
58501876 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA
1 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA
58501924 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA
1 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA
58501972 GAA GAA GAA GAA GAA
1 GAA GAA GAA GAA GAA
58501987 NNNNNNNNNN
Statistics
Matches: 156, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 156 1.00
ACGTcount: A:0.67, C:0.00, G:0.33, T:0.00
Consensus pattern (3 bp):
GAA
Found at i:58520333 original size:6 final size:6
Alignment explanation
Indices: 58520334--58520445 Score: 217
Period size: 6 Copynumber: 18.8 Consensus size: 6
58520324 ATTAATATTA
58520334 ATAA-T ATAAAT ATAAAT ATAAAT ATAAAT ATAAAT ATAAAT ATAAAT
1 ATAAAT ATAAAT ATAAAT ATAAAT ATAAAT ATAAAT ATAAAT ATAAAT
58520381 ATAAAT ATAAAT ATAAAT ATAAAT ATAAAT ATAAAT ATAAAT ATAAAT
1 ATAAAT ATAAAT ATAAAT ATAAAT ATAAAT ATAAAT ATAAAT ATAAAT
58520429 ATAAAT ATAAAT ATAAA
1 ATAAAT ATAAAT ATAAA
58520446 ATTTAAAATT
Statistics
Matches: 106, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
5 4 0.04
6 102 0.96
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (6 bp):
ATAAAT
Found at i:58520338 original size:9 final size:9
Alignment explanation
Indices: 58520321--58520435 Score: 52
Period size: 8 Copynumber: 12.8 Consensus size: 9
58520311 ATTTTATTTA
*
58520321 ATAATTAAT
1 ATAAATAAT
*
58520330 ATTAATAAT
1 ATAAATAAT
58520339 ATAAAT-AT
1 ATAAATAAT
58520347 A-AATATAAAT
1 ATAA-AT-AAT
58520357 ATAAAT-AT
1 ATAAATAAT
58520365 A-AATATAAAT
1 ATAA-AT-AAT
58520375 ATAAAT-AT
1 ATAAATAAT
58520383 A-AATATAAAT
1 ATAA-AT-AAT
58520393 ATAAAT-AT
1 ATAAATAAT
58520401 A-AATATAAAT
1 ATAA-AT-AAT
58520411 ATAAAT-AT
1 ATAAATAAT
58520419 A-AATATAAAT
1 ATAA-AT-AAT
58520429 ATAAATA
1 ATAAATA
58520436 TAAATATAAA
Statistics
Matches: 83, Mismatches: 3, Indels: 40
0.66 0.02 0.32
Matches are distributed among these distances:
7 10 0.12
8 25 0.30
9 13 0.16
10 25 0.30
11 10 0.12
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (9 bp):
ATAAATAAT
Found at i:58524444 original size:25 final size:26
Alignment explanation
Indices: 58524389--58524454 Score: 71
Period size: 26 Copynumber: 2.5 Consensus size: 26
58524379 GCCCTCAACA
*
58524389 TATTATATCAATTTAGTAATTAATAT
1 TATTATATCAATTTAATAATTAATAT
* **
58524415 AATTATATTTATTTAAT-ATTAATAT
1 TATTATATCAATTTAATAATTAATAT
*
58524440 TATTAATATAAATTT
1 TATT-ATATCAATTT
58524455 TAAATTTGTT
Statistics
Matches: 32, Mismatches: 7, Indels: 2
0.78 0.17 0.05
Matches are distributed among these distances:
25 11 0.34
26 21 0.66
ACGTcount: A:0.44, C:0.02, G:0.02, T:0.53
Consensus pattern (26 bp):
TATTATATCAATTTAATAATTAATAT
Found at i:58527374 original size:57 final size:57
Alignment explanation
Indices: 58527305--58527417 Score: 199
Period size: 57 Copynumber: 2.0 Consensus size: 57
58527295 CTTGTAACTA
* *
58527305 TTCTCCATTATCTACTTGAACAAGTTCAATGCATCTTTAGCTATACCTTGAAGACAT
1 TTCTCCATTATCTACTCGAACAAGCTCAATGCATCTTTAGCTATACCTTGAAGACAT
*
58527362 TTCTCCATTATCTCCTCGAACAAGCTCAATGCATCTTTAGCTATACCTTGAAGACA
1 TTCTCCATTATCTACTCGAACAAGCTCAATGCATCTTTAGCTATACCTTGAAGACA
58527418 ATATCCATTG
Statistics
Matches: 53, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
57 53 1.00
ACGTcount: A:0.29, C:0.26, G:0.11, T:0.35
Consensus pattern (57 bp):
TTCTCCATTATCTACTCGAACAAGCTCAATGCATCTTTAGCTATACCTTGAAGACAT
Found at i:58528168 original size:69 final size:69
Alignment explanation
Indices: 58528057--58528195 Score: 260
Period size: 69 Copynumber: 2.0 Consensus size: 69
58528047 CTAGAGCAAC
*
58528057 ACTCTACCATTATCTTTTGGTCAAGTTCTTTGCAATGCTTGCCTTCTTTTCCCTTGATCTCCCAA
1 ACTCTACCATTATCTTTTGGTCAAGTTCTTTGCAATGCTTGCCTACTTTTCCCTTGATCTCCCAA
58528122 AATA
66 AATA
*
58528126 ACTCTACCATTATCTTTTGGTCAAGTTCTTTGCAATGCTTGCCTACTTTTCCCTTGATCTCTCAA
1 ACTCTACCATTATCTTTTGGTCAAGTTCTTTGCAATGCTTGCCTACTTTTCCCTTGATCTCCCAA
58528191 AATA
66 AATA
58528195 A
1 A
58528196 TACATAGTGA
Statistics
Matches: 68, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
69 68 1.00
ACGTcount: A:0.22, C:0.27, G:0.10, T:0.42
Consensus pattern (69 bp):
ACTCTACCATTATCTTTTGGTCAAGTTCTTTGCAATGCTTGCCTACTTTTCCCTTGATCTCCCAA
AATA
Found at i:58532962 original size:23 final size:23
Alignment explanation
Indices: 58532936--58532980 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
58532926 TGGGTATGTG
*
58532936 ATGACGTTATCTT-ATAAATATGC
1 ATGAAGTTATCTTGA-AAATATGC
*
58532959 ATGAATTTATCTTGAAAATATG
1 ATGAAGTTATCTTGAAAATATG
58532981 TTGAATTGGT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 18 0.95
24 1 0.05
ACGTcount: A:0.38, C:0.09, G:0.13, T:0.40
Consensus pattern (23 bp):
ATGAAGTTATCTTGAAAATATGC
Found at i:58539111 original size:14 final size:14
Alignment explanation
Indices: 58539092--58539120 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
58539082 TGGATATAAT
58539092 TAATTTCTAGAATC
1 TAATTTCTAGAATC
58539106 TAATTTCTAGAATC
1 TAATTTCTAGAATC
58539120 T
1 T
58539121 TGAGTGAGTC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.34, C:0.14, G:0.07, T:0.45
Consensus pattern (14 bp):
TAATTTCTAGAATC
Found at i:58539832 original size:72 final size:72
Alignment explanation
Indices: 58539747--58539890 Score: 288
Period size: 72 Copynumber: 2.0 Consensus size: 72
58539737 GGGAAGAAAT
58539747 TCCGTTTGAATGAAAGGAAAATTCGATGGATCTCTAAAAAGGAATTGATGGTAAAAAGGATCTAA
1 TCCGTTTGAATGAAAGGAAAATTCGATGGATCTCTAAAAAGGAATTGATGGTAAAAAGGATCTAA
58539812 CCCGGAC
66 CCCGGAC
58539819 TCCGTTTGAATGAAAGGAAAATTCGATGGATCTCTAAAAAGGAATTGATGGTAAAAAGGATCTAA
1 TCCGTTTGAATGAAAGGAAAATTCGATGGATCTCTAAAAAGGAATTGATGGTAAAAAGGATCTAA
58539884 CCCGGAC
66 CCCGGAC
58539891 GGGTGATCCT
Statistics
Matches: 72, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
72 72 1.00
ACGTcount: A:0.39, C:0.14, G:0.24, T:0.24
Consensus pattern (72 bp):
TCCGTTTGAATGAAAGGAAAATTCGATGGATCTCTAAAAAGGAATTGATGGTAAAAAGGATCTAA
CCCGGAC
Found at i:58542651 original size:50 final size:50
Alignment explanation
Indices: 58542575--58542751 Score: 273
Period size: 50 Copynumber: 3.5 Consensus size: 50
58542565 CCATGGCAAC
*
58542575 AAGTGATAAGTGATAGCTTCGACTACACTTATCTGATCAAGGACAAATAA
1 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATAA
* * *
58542625 AAGTGATAAGTAATAGCTTCGGCTACACTTATCTGATCAAGGACAAGTGA
1 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATAA
* *
58542675 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAATGACAAATGAC
1 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAAT-AA
* *
58542726 AAGTGAAAAGTGGTAGCTTCGGCTAC
1 AAGTGATAAGTGATAGCTTCGGCTAC
58542752 CTGTTCAGTG
Statistics
Matches: 115, Mismatches: 11, Indels: 1
0.91 0.09 0.01
Matches are distributed among these distances:
50 91 0.79
51 24 0.21
ACGTcount: A:0.36, C:0.16, G:0.21, T:0.26
Consensus pattern (50 bp):
AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATAA
Found at i:58542765 original size:31 final size:31
Alignment explanation
Indices: 58542727--58542844 Score: 191
Period size: 31 Copynumber: 3.8 Consensus size: 31
58542717 ACAAATGACA
*
58542727 AGTGAAAAGTGGTAGCTTCGGCTACCTGTTC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
*
58542758 AGTGAAAAGTGGTAGCTTCTGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
* *
58542789 AGTGAAAAGTGGTAGCTCCAGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
*
58542820 AGTGAATAGTGGTAGCTTCGGCTAC
1 AGTGAAAAGTGGTAGCTTCGGCTAC
58542845 AAGTGACAAG
Statistics
Matches: 80, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
31 80 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.27
Consensus pattern (31 bp):
AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
Found at i:58543063 original size:42 final size:41
Alignment explanation
Indices: 58542956--58543068 Score: 129
Period size: 42 Copynumber: 2.7 Consensus size: 41
58542946 TATGTGATTC
* *
58542956 GTGTAAGACCATAGCT-AAGCTATGGCATTGATATATGAATAT
1 GTGTAAGACCATAGCTGAA-CTATGGCA-TCATATATGAAGAT
* ** *
58542998 GTGTAAGACCATAACTGGGCTATGGCATCATTATGTGAAGAT
1 GTGTAAGACCATAGCTGAACTATGGCATCA-TATATGAAGAT
*
58543040 GTGTAAGACCATAGTTGAACTATGGCATC
1 GTGTAAGACCATAGCTGAACTATGGCATC
58543069 GAGAAAAAGA
Statistics
Matches: 59, Mismatches: 10, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
41 2 0.03
42 57 0.97
ACGTcount: A:0.33, C:0.14, G:0.24, T:0.29
Consensus pattern (41 bp):
GTGTAAGACCATAGCTGAACTATGGCATCATATATGAAGAT
Found at i:58550535 original size:20 final size:20
Alignment explanation
Indices: 58550510--58550549 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
58550500 TTGATAATCA
58550510 GATAACCATTGTAATATTCC
1 GATAACCATTGTAATATTCC
58550530 GATAACCATTGTAATATTCC
1 GATAACCATTGTAATATTCC
58550550 AAATTTGACC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.35, C:0.20, G:0.10, T:0.35
Consensus pattern (20 bp):
GATAACCATTGTAATATTCC
Found at i:58552247 original size:77 final size:77
Alignment explanation
Indices: 58552116--58552258 Score: 241
Period size: 77 Copynumber: 1.9 Consensus size: 77
58552106 CACCGTAGAA
* * *
58552116 GCAAAGATTGAACCAACCGTGATAACCTCGTCTCGTTGGATTAAACCAAGAAGTAATTGACAGTA
1 GCAAAGAGTGAACCAACCGTGACAACCTCGTCTCGTTGGATTAAACCAAAAAGTAATTGACAGTA
58552181 TGCACCACAGAT
66 TGCACCACAGAT
* *
58552193 GCAAAGAGTGAACCAACCTTGACAACCTCGTCTCGTTGGATTAAACTAAAAAGTAATTGACAGTA
1 GCAAAGAGTGAACCAACCGTGACAACCTCGTCTCGTTGGATTAAACCAAAAAGTAATTGACAGTA
58552258 T
66 T
58552259 AAGCCGTGGT
Statistics
Matches: 61, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
77 61 1.00
ACGTcount: A:0.37, C:0.21, G:0.19, T:0.23
Consensus pattern (77 bp):
GCAAAGAGTGAACCAACCGTGACAACCTCGTCTCGTTGGATTAAACCAAAAAGTAATTGACAGTA
TGCACCACAGAT
Found at i:58555626 original size:46 final size:52
Alignment explanation
Indices: 58555517--58555652 Score: 149
Period size: 53 Copynumber: 2.7 Consensus size: 52
58555507 ATTCGCGTTC
*
58555517 CCGTATAAGACCATAGTTGGGCTATGGCATCGGTGTGATGTGATAATGTGATT
1 CCGTATAAGACCATAGTTGGGATATGGCATCGGTGTGA-GTGATAATGTGATT
*
58555570 CCGTATAAGACCATATTTGGGATATGGCATC-G-GT-A-TGAT-ATGTGA-T
1 CCGTATAAGACCATAGTTGGGATATGGCATCGGTGTGAGTGATAATGTGATT
* * ** * *
58555616 CCGTGTAAGACCATGGCAGGGCTATGGCTTCGGTGTG
1 CCGTATAAGACCATAGTTGGGATATGGCATCGGTGTG
58555653 TGATGTGTGA
Statistics
Matches: 71, Mismatches: 9, Indels: 10
0.79 0.10 0.11
Matches are distributed among these distances:
46 25 0.35
47 7 0.10
48 6 0.08
50 1 0.01
51 2 0.03
52 1 0.01
53 29 0.41
ACGTcount: A:0.24, C:0.15, G:0.31, T:0.30
Consensus pattern (52 bp):
CCGTATAAGACCATAGTTGGGATATGGCATCGGTGTGAGTGATAATGTGATT
Found at i:58558431 original size:13 final size:13
Alignment explanation
Indices: 58558415--58558440 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
58558405 CTTTTACATA
58558415 AACCTTTAATGTC
1 AACCTTTAATGTC
58558428 AACCTTTAATGTC
1 AACCTTTAATGTC
58558441 CATGTTGTGC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (13 bp):
AACCTTTAATGTC
Found at i:58567795 original size:19 final size:19
Alignment explanation
Indices: 58567771--58567810 Score: 55
Period size: 20 Copynumber: 2.1 Consensus size: 19
58567761 TTATACAAGA
58567771 TTTAGATTTAGG-TTTTATT
1 TTTAGA-TTAGGATTTTATT
58567790 TTTAGATTAGGATTTTTATT
1 TTTAGATTAGGA-TTTTATT
58567810 T
1 T
58567811 ATGCAAAATT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
18 5 0.26
19 6 0.32
20 8 0.42
ACGTcount: A:0.23, C:0.00, G:0.15, T:0.62
Consensus pattern (19 bp):
TTTAGATTAGGATTTTATT
Found at i:58574293 original size:24 final size:24
Alignment explanation
Indices: 58574247--58574294 Score: 64
Period size: 24 Copynumber: 2.0 Consensus size: 24
58574237 ATATATATAC
58574247 AAATTCAATCAATATAAATTCAAT
1 AAATTCAATCAATATAAATTCAAT
58574271 AAATTC-ATCACATACTAAA-TCAAT
1 AAATTCAATCA-ATA-TAAATTCAAT
58574295 CCATTTAAAT
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
23 4 0.18
24 14 0.64
25 4 0.18
ACGTcount: A:0.52, C:0.17, G:0.00, T:0.31
Consensus pattern (24 bp):
AAATTCAATCAATATAAATTCAAT
Found at i:58574986 original size:4 final size:4
Alignment explanation
Indices: 58574963--58575034 Score: 58
Period size: 4 Copynumber: 17.2 Consensus size: 4
58574953 CGTGGCTTTC
* *
58574963 TCTT TCATT TCTT TCCTT TTTT TTTT TCTT TCTT TC-T T-TT TCTT TCTGTT
1 TCTT TC-TT TCTT T-CTT TCTT TCTT TCTT TCTT TCTT TCTT TCTT TC--TT
*
58575013 TCGTT TCTA TCTT TCTT TCTT T
1 TC-TT TCTT TCTT TCTT TCTT T
58575035 TTATTTATTC
Statistics
Matches: 58, Mismatches: 4, Indels: 12
0.78 0.05 0.16
Matches are distributed among these distances:
3 4 0.07
4 37 0.64
5 13 0.22
6 4 0.07
ACGTcount: A:0.03, C:0.21, G:0.03, T:0.74
Consensus pattern (4 bp):
TCTT
Found at i:58575224 original size:18 final size:19
Alignment explanation
Indices: 58575187--58575224 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
58575177 TTAATTTTTC
*
58575187 TTTAATCTATAATTCAATT
1 TTTAATCTATAATGCAATT
*
58575206 TTTACTCTAT-ATGCAATT
1 TTTAATCTATAATGCAATT
58575224 T
1 T
58575225 AGTTCTTATA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
18 8 0.47
19 9 0.53
ACGTcount: A:0.32, C:0.13, G:0.03, T:0.53
Consensus pattern (19 bp):
TTTAATCTATAATGCAATT
Found at i:58576791 original size:19 final size:19
Alignment explanation
Indices: 58576767--58576804 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
58576757 TGCTTTAATA
*
58576767 TGGTGTAGTACTAATTATG
1 TGGTGTAATACTAATTATG
*
58576786 TGGTGTAATACTAGTTATG
1 TGGTGTAATACTAATTATG
58576805 CACTTGGAAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.26, C:0.05, G:0.26, T:0.42
Consensus pattern (19 bp):
TGGTGTAATACTAATTATG
Found at i:58579465 original size:26 final size:26
Alignment explanation
Indices: 58579435--58579489 Score: 110
Period size: 26 Copynumber: 2.1 Consensus size: 26
58579425 GGTTTGAGGT
58579435 GTAACAATTAATCCTCAAAATTGATC
1 GTAACAATTAATCCTCAAAATTGATC
58579461 GTAACAATTAATCCTCAAAATTGATC
1 GTAACAATTAATCCTCAAAATTGATC
58579487 GTA
1 GTA
58579490 TGTAAGAAGG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.42, C:0.18, G:0.09, T:0.31
Consensus pattern (26 bp):
GTAACAATTAATCCTCAAAATTGATC
Found at i:58579549 original size:13 final size:13
Alignment explanation
Indices: 58579533--58579558 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
58579523 CTTTTACATA
58579533 AACCTTTAATGTC
1 AACCTTTAATGTC
58579546 AACCTTTAATGTC
1 AACCTTTAATGTC
58579559 CATGTTGTGC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (13 bp):
AACCTTTAATGTC
Found at i:58579771 original size:28 final size:28
Alignment explanation
Indices: 58579731--58579786 Score: 112
Period size: 28 Copynumber: 2.0 Consensus size: 28
58579721 CTTGAACAAG
58579731 TTCAATGCATCTTTAGCTATACCTTGAA
1 TTCAATGCATCTTTAGCTATACCTTGAA
58579759 TTCAATGCATCTTTAGCTATACCTTGAA
1 TTCAATGCATCTTTAGCTATACCTTGAA
58579787 GAAAATATCC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.29, C:0.21, G:0.11, T:0.39
Consensus pattern (28 bp):
TTCAATGCATCTTTAGCTATACCTTGAA
Found at i:58582273 original size:11 final size:10
Alignment explanation
Indices: 58582259--58582343 Score: 53
Period size: 11 Copynumber: 7.7 Consensus size: 10
58582249 TTTTTTTCAT
58582259 TATTTTATTA
1 TATTTTATTA
58582269 GTATTTTATTA
1 -TATTTTATTA
58582280 TATTGTTATTA
1 TATT-TTATTA
*
58582291 TTTTATTATTA
1 TATT-TTATTA
* * *
58582302 TTATATAATTGT
1 -TATTTTATT-A
58582314 TATTTTATTA
1 TATTTTATTA
*
58582324 TTAATTTTGTTA
1 -T-ATTTTATTA
58582336 CTATTTTA
1 -TATTTTA
58582344 GATTTATTTA
Statistics
Matches: 57, Mismatches: 12, Indels: 10
0.72 0.15 0.13
Matches are distributed among these distances:
10 4 0.07
11 42 0.74
12 11 0.19
ACGTcount: A:0.28, C:0.01, G:0.05, T:0.66
Consensus pattern (10 bp):
TATTTTATTA
Found at i:58582291 original size:14 final size:14
Alignment explanation
Indices: 58582274--58582321 Score: 55
Period size: 14 Copynumber: 3.5 Consensus size: 14
58582264 TATTAGTATT
58582274 TTATTATATTGTTA
1 TTATTATATTGTTA
* *
58582288 TTATTTTATTATTA
1 TTATTATATTGTTA
58582302 TTA-TATAATTGTTA
1 TTATTAT-ATTGTTA
58582316 TT-TTAT
1 TTATTAT
58582322 TATTAATTTT
Statistics
Matches: 28, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
13 2 0.07
14 26 0.93
ACGTcount: A:0.29, C:0.00, G:0.04, T:0.67
Consensus pattern (14 bp):
TTATTATATTGTTA
Found at i:58582302 original size:25 final size:25
Alignment explanation
Indices: 58582270--58582343 Score: 82
Period size: 25 Copynumber: 3.1 Consensus size: 25
58582260 ATTTTATTAG
58582270 TATT-TTATTATATTGTTATTATTT
1 TATTATTATTATATTGTTATTATTT
** *
58582294 TATTATTATTATATAATTGTTATTT
1 TATTATTATTATATTGTTATTATTT
* *
58582319 TATTATTA--ATTTTGTTACTATTT
1 TATTATTATTATATTGTTATTATTT
58582342 TA
1 TA
58582344 GATTTATTTA
Statistics
Matches: 41, Mismatches: 8, Indels: 3
0.79 0.15 0.06
Matches are distributed among these distances:
23 12 0.29
24 4 0.10
25 25 0.61
ACGTcount: A:0.28, C:0.01, G:0.04, T:0.66
Consensus pattern (25 bp):
TATTATTATTATATTGTTATTATTT
Found at i:58584305 original size:22 final size:21
Alignment explanation
Indices: 58584275--58584321 Score: 58
Period size: 22 Copynumber: 2.2 Consensus size: 21
58584265 TACAAATTAA
58584275 ATCTCCAAGATTACAAGATCAT
1 ATCTCCAAGATTAC-AGATCAT
* * *
58584297 ATCTTCAAGATTGCATATCAT
1 ATCTCCAAGATTACAGATCAT
58584318 ATCT
1 ATCT
58584322 AAGATTGCAT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
21 10 0.45
22 12 0.55
ACGTcount: A:0.36, C:0.21, G:0.09, T:0.34
Consensus pattern (21 bp):
ATCTCCAAGATTACAGATCAT
Found at i:58584315 original size:16 final size:16
Alignment explanation
Indices: 58584294--58584344 Score: 57
Period size: 19 Copynumber: 2.9 Consensus size: 16
58584284 ATTACAAGAT
58584294 CATATCTTCAAGATTG
1 CATATCTTCAAGATTG
58584310 CATATCATATCTAAGATTG
1 CATATC-T-TC-AAGATTG
*
58584329 CATATCCTTAAAGATT
1 CATAT-CTTCAAGATT
58584345 ATATTTCCAT
Statistics
Matches: 30, Mismatches: 1, Indels: 7
0.79 0.03 0.18
Matches are distributed among these distances:
16 6 0.20
17 7 0.23
18 3 0.10
19 13 0.43
20 1 0.03
ACGTcount: A:0.35, C:0.18, G:0.10, T:0.37
Consensus pattern (16 bp):
CATATCTTCAAGATTG
Found at i:58584327 original size:19 final size:21
Alignment explanation
Indices: 58584292--58584334 Score: 72
Period size: 19 Copynumber: 2.1 Consensus size: 21
58584282 AGATTACAAG
58584292 ATCATATCTTCAAGATTGCAT
1 ATCATATCTTCAAGATTGCAT
58584313 ATCATATC-T-AAGATTGCAT
1 ATCATATCTTCAAGATTGCAT
58584332 ATC
1 ATC
58584335 CTTAAAGATT
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
19 13 0.59
20 1 0.05
21 8 0.36
ACGTcount: A:0.35, C:0.19, G:0.09, T:0.37
Consensus pattern (21 bp):
ATCATATCTTCAAGATTGCAT
Found at i:58584870 original size:87 final size:86
Alignment explanation
Indices: 58584731--58585049 Score: 233
Period size: 87 Copynumber: 3.7 Consensus size: 86
58584721 ATACAGAGAC
* * * * *
58584731 GCCAAATCATCTTAGATCTGCTTCAGCGT-AAACA-CGTGAAAGTCAAATCTGCTATGTCTTCGA
1 GCCAAATCATCTTGGATCTGCTTCA--GTAAAACATC-TGAAGGTTAGACCTGCTATGTCTTCGA
58584794 TTTGCTCCTTGTGAACACAAGGAT
63 TTTGCTCCTTGTGAACACAAGGAT
* * *
58584818 GCCAAATCATTTTGGATCTGCTTCAATAAAATCATCTGAAGGTTAGACCTGCTATGTACCT-G--
1 GCCAAATCATCTTGGATCTGCTTCAGTAAAA-CATCTGAAGGTTAGACCTGCTATGT-CTTCGAT
* * * **
58584880 CT-CTCCAT-CGAA-A-TGGAGAT
64 TTGCTCCTTGTGAACACAAG-GAT
* ** * * * * *
58584900 GCCAGATTAGTTATCTTGGATCTGCTTTGGTGTAAGAACATCCGAAAGTCAAATCTGCTATGTCT
1 GCCA-A--A-TCATCTTGGATCTGC-TT-CAGTAA-AACATCTGAAGGTTAGACCTGCTATGTCT
* * *
58584965 TCGATTTGTTCCTTGTAAACACAAGAAT
59 TCGATTTGCTCCTTGTGAACACAAGGAT
58584993 GCCAAATCATCTTGGATCTGCTTCAGTATAAACATCTGAAGGTTAGACCTGCTATGT
1 GCCAAATCATCTTGGATCTGCTTCAGTA-AAACATCTGAAGGTTAGACCTGCTATGT
58585050 NNNNNNNNNN
Statistics
Matches: 172, Mismatches: 40, Indels: 40
0.68 0.16 0.16
Matches are distributed among these distances:
81 1 0.01
82 8 0.05
83 4 0.02
84 5 0.03
85 3 0.02
86 16 0.09
87 72 0.42
88 30 0.17
89 16 0.09
90 2 0.01
91 4 0.02
92 3 0.02
93 7 0.04
94 1 0.01
ACGTcount: A:0.29, C:0.21, G:0.19, T:0.32
Consensus pattern (86 bp):
GCCAAATCATCTTGGATCTGCTTCAGTAAAACATCTGAAGGTTAGACCTGCTATGTCTTCGATTT
GCTCCTTGTGAACACAAGGAT
Found at i:58594360 original size:26 final size:25
Alignment explanation
Indices: 58594323--58594428 Score: 167
Period size: 26 Copynumber: 4.1 Consensus size: 25
58594313 ATACAAATTA
58594323 ATAATAGGTTAGGTAAATGTTCCATG
1 ATAAT-GGTTAGGTAAATGTTCCATG
*
58594349 ATAATGGATTAGGTAAATATTCCATG
1 ATAATGG-TTAGGTAAATGTTCCATG
58594375 ATAATGGGTTAGGTAAATGTTCCATG
1 ATAAT-GGTTAGGTAAATGTTCCATG
58594401 ATAATGGTTTAGGTAAATGTTCCATG
1 ATAATGG-TTAGGTAAATGTTCCATG
58594427 AT
1 AT
58594429 GAGAATTTCA
Statistics
Matches: 75, Mismatches: 2, Indels: 6
0.90 0.02 0.07
Matches are distributed among these distances:
25 4 0.05
26 69 0.92
27 2 0.03
ACGTcount: A:0.34, C:0.08, G:0.23, T:0.36
Consensus pattern (25 bp):
ATAATGGTTAGGTAAATGTTCCATG
Found at i:58594385 original size:52 final size:52
Alignment explanation
Indices: 58594323--58594428 Score: 185
Period size: 52 Copynumber: 2.0 Consensus size: 52
58594313 ATACAAATTA
58594323 ATAATAGGTTAGGTAAATGTTCCATGATAATGGATTAGGTAAATATTCCATG
1 ATAATAGGTTAGGTAAATGTTCCATGATAATGGATTAGGTAAATATTCCATG
* * *
58594375 ATAATGGGTTAGGTAAATGTTCCATGATAATGGTTTAGGTAAATGTTCCATG
1 ATAATAGGTTAGGTAAATGTTCCATGATAATGGATTAGGTAAATATTCCATG
58594427 AT
1 AT
58594429 GAGAATTTCA
Statistics
Matches: 51, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
52 51 1.00
ACGTcount: A:0.34, C:0.08, G:0.23, T:0.36
Consensus pattern (52 bp):
ATAATAGGTTAGGTAAATGTTCCATGATAATGGATTAGGTAAATATTCCATG
Found at i:58604723 original size:13 final size:13
Alignment explanation
Indices: 58604705--58604730 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
58604695 TCATAAGTTT
58604705 GGGCTTAATTTTA
1 GGGCTTAATTTTA
58604718 GGGCTTAATTTTA
1 GGGCTTAATTTTA
58604731 ATGAATGTCT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.23, C:0.08, G:0.23, T:0.46
Consensus pattern (13 bp):
GGGCTTAATTTTA
Found at i:58606809 original size:18 final size:16
Alignment explanation
Indices: 58606784--58606826 Score: 59
Period size: 18 Copynumber: 2.6 Consensus size: 16
58606774 AGGGGTTTTT
*
58606784 ATTAAATTATTTATGTA
1 ATTAAATTATTT-TATA
58606801 ATATAAATTATTTTATA
1 AT-TAAATTATTTTATA
58606818 ATTAAATTA
1 ATTAAATTA
58606827 ATTGTTAATT
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
16 7 0.29
17 7 0.29
18 10 0.42
ACGTcount: A:0.47, C:0.00, G:0.02, T:0.51
Consensus pattern (16 bp):
ATTAAATTATTTTATA
Found at i:58607899 original size:44 final size:44
Alignment explanation
Indices: 58607836--58608837 Score: 1568
Period size: 44 Copynumber: 22.8 Consensus size: 44
58607826 NNNNNNNNNN
58607836 TAGGAAGATAGGATCTGCTACCTTCGATCTACTTCCTACCAATA
1 TAGGAAGATAGGATCTGCTACCTTCGATCTACTTCCTACCAATA
58607880 TAGGAAGATAGGATCTGCTACCTTCGATCTACTTCCTACCAATA
1 TAGGAAGATAGGATCTGCTACCTTCGATCTACTTCCTACCAATA
58607924 TAGGAAGATAGGATCTGCTACCTTCGATCTACTTCCTACCAATA
1 TAGGAAGATAGGATCTGCTACCTTCGATCTACTTCCTACCAATA
58607968 TAGGAAGATAGGATCTGCTACCTTCGATCTACTTCCTACCAATA
1 TAGGAAGATAGGATCTGCTACCTTCGATCTACTTCCTACCAATA
58608012 TAGGAAGATAGGATCTGCTACCTTCGATCTACTTCCTACCAATA
1 TAGGAAGATAGGATCTGCTACCTTCGATCTACTTCCTACCAATA
58608056 TAGGAAGATAGGATCTGCTACCTTCGATCTACTTCCTACCAATA
1 TAGGAAGATAGGATCTGCTACCTTCGATCTACTTCCTACCAATA
58608100 TAGGAAGATAGGATCTGCTACCTTCGATCTACTTCCTACCAATA
1 TAGGAAGATAGGATCTGCTACCTTCGATCTACTTCCTACCAATA
58608144 TAGGAAGATAGGATCTGCTACCTTCGATCTACTTCCTACCAATA
1 TAGGAAGATAGGATCTGCTACCTTCGATCTACTTCCTACCAATA
58608188 TAGGAAGATAGGATCTGCTACCTTCGATCTACTTCCTACCAATA
1 TAGGAAGATAGGATCTGCTACCTTCGATCTACTTCCTACCAATA
58608232 TAGGAAGATAGGATCTGCTACCTTCGATCTACTTCCTACCAATA
1 TAGGAAGATAGGATCTGCTACCTTCGATCTACTTCCTACCAATA
58608276 TAGGAAGATAGGATCTGCTACCTTCGATCTACTTCCTACCAATA
1 TAGGAAGATAGGATCTGCTACCTTCGATCTACTTCCTACCAATA
58608320 TAGGAAGATAGGATCTGCTACCTTCGATCTACTTCCTACCAATA
1 TAGGAAGATAGGATCTGCTACCTTCGATCTACTTCCTACCAATA
58608364 TAGGAAGATAGGATCTGCTACCTTCGATCTACTTCCTACCAATA
1 TAGGAAGATAGGATCTGCTACCTTCGATCTACTTCCTACCAATA
58608408 TAGGAAGATAGGATCTGCTACCTTCGATCTACTTCCTACCAATA
1 TAGGAAGATAGGATCTGCTACCTTCGATCTACTTCCTACCAATA
58608452 TAGGAAGATAGGATCTGCTACCTTCGATCTACTTCCTACCAATA
1 TAGGAAGATAGGATCTGCTACCTTCGATCTACTTCCTACCAATA
58608496 TAGGAAGATAGGATCTGCTACCTTCGATCTACTTCCTACCAATA
1 TAGGAAGATAGGATCTGCTACCTTCGATCTACTTCCTACCAATA
* * *
58608540 TAGGAAGATAGGATCTGATATCTTCGATCTACTTCAC-GCCAATA
1 TAGGAAGATAGGATCTGCTACCTTCGATCTACTTC-CTACCAATA
* * * * ** * *
58608584 CATGAAGACAAGATCTGCTTTCTTCGATCTACTTCGCCACCAAAA
1 TAGGAAGATAGGATCTGCTACCTTCGATCTACTTC-CTACCAATA
* * * * * *
58608629 TGGGAAGACAAGATCTGC-ATCTTCGATCCACTTCTTACCAATA
1 TAGGAAGATAGGATCTGCTACCTTCGATCTACTTCCTACCAATA
* * *
58608672 TAGGAAGATAGGATCTGATATCTTCGATCTACTTCAC-GCCAATA
1 TAGGAAGATAGGATCTGCTACCTTCGATCTACTTC-CTACCAATA
* * * * * *
58608716 CATGAAGACAAGATCTGCT-TCTTCGATCTACTT-C-ACGCTAATG
1 TAGGAAGATAGGATCTGCTACCTTCGATCTACTTCCTAC-C-AATA
* * * * ** *
58608759 CATGAAGACAAGATCTGCTTTCTTCGATCTACTTCGCCACCAATA
1 TAGGAAGATAGGATCTGCTACCTTCGATCTACTTC-CTACCAATA
* * * *
58608804 TGGGAAGACAAGATCTGC-ATCTTCGATCTACTTC
1 TAGGAAGATAGGATCTGCTACCTTCGATCTACTTC
58608838 ACGCCAATAC
Statistics
Matches: 909, Mismatches: 39, Indels: 20
0.94 0.04 0.02
Matches are distributed among these distances:
41 2 0.00
42 1 0.00
43 56 0.06
44 807 0.89
45 39 0.04
46 2 0.00
47 2 0.00
ACGTcount: A:0.30, C:0.25, G:0.16, T:0.29
Consensus pattern (44 bp):
TAGGAAGATAGGATCTGCTACCTTCGATCTACTTCCTACCAATA
Found at i:58619678 original size:12 final size:12
Alignment explanation
Indices: 58619661--58619688 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
58619651 AACATGATAA
58619661 AAAATATAACTC
1 AAAATATAACTC
58619673 AAAATATAACTC
1 AAAATATAACTC
58619685 AAAA
1 AAAA
58619689 AAATTGGTAC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.64, C:0.14, G:0.00, T:0.21
Consensus pattern (12 bp):
AAAATATAACTC
Found at i:58627022 original size:37 final size:37
Alignment explanation
Indices: 58626972--58627211 Score: 453
Period size: 37 Copynumber: 6.5 Consensus size: 37
58626962 GGTAGCTTTA
* * *
58626972 GCTACACTTATCTGATCAAGAGACAGAGTGATAAGTG
1 GCTACACTTATCTGATCAAGAAACAAAGTGATAGGTG
58627009 GCTACACTTATCTGATCAAGAAACAAAGTGATAGGTG
1 GCTACACTTATCTGATCAAGAAACAAAGTGATAGGTG
58627046 GCTACACTTATCTGATCAAGAAACAAAGTGATAGGTG
1 GCTACACTTATCTGATCAAGAAACAAAGTGATAGGTG
58627083 GCTACACTTATCTGATCAAGAAACAAAGTGATAGGTG
1 GCTACACTTATCTGATCAAGAAACAAAGTGATAGGTG
58627120 GCTACACTTATCTGATCAAGAAACAAAGTGATAGGTG
1 GCTACACTTATCTGATCAAGAAACAAAGTGATAGGTG
58627157 GCTACACTTATCTGATCAAGAAACAAAGTGATAGGTG
1 GCTACACTTATCTGATCAAGAAACAAAGTGATAGGTG
58627194 GCTACACTTATCTGATCA
1 GCTACACTTATCTGATCA
58627212 GGGACAAGTG
Statistics
Matches: 200, Mismatches: 3, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
37 200 1.00
ACGTcount: A:0.37, C:0.17, G:0.21, T:0.25
Consensus pattern (37 bp):
GCTACACTTATCTGATCAAGAAACAAAGTGATAGGTG
Found at i:58628086 original size:50 final size:50
Alignment explanation
Indices: 58628021--58628120 Score: 200
Period size: 50 Copynumber: 2.0 Consensus size: 50
58628011 ATTTCTTAAC
58628021 TGAGTCCGAATTCACGGGATTGGGTAAGGTCTTGCCATCCATTTCGGCCA
1 TGAGTCCGAATTCACGGGATTGGGTAAGGTCTTGCCATCCATTTCGGCCA
58628071 TGAGTCCGAATTCACGGGATTGGGTAAGGTCTTGCCATCCATTTCGGCCA
1 TGAGTCCGAATTCACGGGATTGGGTAAGGTCTTGCCATCCATTTCGGCCA
58628121 ATATCAATGC
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
50 50 1.00
ACGTcount: A:0.20, C:0.24, G:0.28, T:0.28
Consensus pattern (50 bp):
TGAGTCCGAATTCACGGGATTGGGTAAGGTCTTGCCATCCATTTCGGCCA
Found at i:58635254 original size:18 final size:18
Alignment explanation
Indices: 58635218--58635260 Score: 61
Period size: 18 Copynumber: 2.3 Consensus size: 18
58635208 AGTGTGTATG
58635218 ATGCAATGCTGATGCATGA
1 ATGCAATGC-GATGCATGA
58635237 ATGCAATG-GATGCAATGA
1 ATGCAATGCGATGC-ATGA
58635255 ATGCAA
1 ATGCAA
58635261 AAAAGTGCTG
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
17 5 0.22
18 10 0.43
19 8 0.35
ACGTcount: A:0.37, C:0.14, G:0.26, T:0.23
Consensus pattern (18 bp):
ATGCAATGCGATGCATGA
Found at i:58638848 original size:8 final size:8
Alignment explanation
Indices: 58638825--58638878 Score: 54
Period size: 8 Copynumber: 6.0 Consensus size: 8
58638815 TAAGGGTAGC
58638825 ATAATAAA
1 ATAATAAA
58638833 ATAAAATAAA
1 AT--AATAAA
58638843 ATAATAAA
1 ATAATAAA
58638851 ATAATAATA
1 ATAATAA-A
58638860 ATGGTAATAAA
1 A---TAATAAA
58638871 ATAATAAA
1 ATAATAAA
58638879 GAAATAATAG
Statistics
Matches: 40, Mismatches: 0, Indels: 12
0.77 0.00 0.23
Matches are distributed among these distances:
8 22 0.55
9 2 0.05
10 8 0.20
11 2 0.05
12 6 0.15
ACGTcount: A:0.70, C:0.00, G:0.04, T:0.26
Consensus pattern (8 bp):
ATAATAAA
Done.