Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr9
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 91122320
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2661692 characters in sequence are not A, C, G, or T
File 18 of 279
Found at i:5897867 original size:27 final size:27
Alignment explanation
Indices: 5897835--5898210 Score: 430
Period size: 27 Copynumber: 14.0 Consensus size: 27
5897825 CTTTAATCGA
*
5897835 TAAAATGACTATTTTGCCCTTATATGG
1 TAAAATGACTATTTTGCCCTTATGTGG
* **
5897862 TGAAATGACTATTTTGCCCTTATAAGG
1 TAAAATGACTATTTTGCCCTTATGTGG
* *
5897889 TAAAATGACTATTTTACCCTTATGGGG
1 TAAAATGACTATTTTGCCCTTATGTGG
* * *
5897916 TAAAATGACTGTTTTGCCATTATGAGG
1 TAAAATGACTATTTTGCCCTTATGTGG
* *
5897943 TAAAATGAGTATTTTCCCCTTATGTGG
1 TAAAATGACTATTTTGCCCTTATGTGG
* * *
5897970 TAAAATGACTGTTTTGCCTTTATGGGG
1 TAAAATGACTATTTTGCCCTTATGTGG
* *
5897997 TAAAATGACTGTTTTGCCCTTATGGGG
1 TAAAATGACTATTTTGCCCTTATGTGG
5898024 TAAAATGACTATTTTGCCCTTATGTGG
1 TAAAATGACTATTTTGCCCTTATGTGG
*
5898051 TAAAATGATTATTTTGCCCTTATGTGG
1 TAAAATGACTATTTTGCCCTTATGTGG
* * *
5898078 TAAAATGACTTTTTTGCCCTTACGGGG
1 TAAAATGACTATTTTGCCCTTATGTGG
* ** *
5898105 TAAAATGACTGTTTTGCCCTTATCAGA
1 TAAAATGACTATTTTGCCCTTATGTGG
* **
5898132 TAAAATGACTGTTTTGCCCTTATAAGG
1 TAAAATGACTATTTTGCCCTTATGTGG
* * *
5898159 TAAAATGATTGTTTTGCCCTT-TATGG
1 TAAAATGACTATTTTGCCCTTATGTGG
* * * * *
5898185 TAAGATGATTGTTTTACCCCTATGTG
1 TAAAATGACTATTTTGCCCTTATGTG
5898211 ATGTATGTTT
Statistics
Matches: 307, Mismatches: 41, Indels: 2
0.88 0.12 0.01
Matches are distributed among these distances:
26 22 0.07
27 285 0.93
ACGTcount: A:0.26, C:0.14, G:0.20, T:0.40
Consensus pattern (27 bp):
TAAAATGACTATTTTGCCCTTATGTGG
Found at i:5901543 original size:27 final size:27
Alignment explanation
Indices: 5901505--5901806 Score: 405
Period size: 27 Copynumber: 11.2 Consensus size: 27
5901495 GACCCTTGAT
5901505 TGTTTTGCCCTTATGAGGTAAAATGAC
1 TGTTTTGCCCTTATGAGGTAAAATGAC
*
5901532 TGTTTTGCCCTTATGA-GAAAAATGAC
1 TGTTTTGCCCTTATGAGGTAAAATGAC
* *
5901558 TGTTTTTCCCTTATGTGGTAAAATGAC
1 TGTTTTGCCCTTATGAGGTAAAATGAC
*
5901585 TGTTTTTCCCTTATGAGGTAAAATGAC
1 TGTTTTGCCCTTATGAGGTAAAATGAC
* * *
5901612 TATTTTGCCCTTATGGGGTAAACTGAC
1 TGTTTTGCCCTTATGAGGTAAAATGAC
* * *
5901639 TGTTTTGCCGTTATGTGGTAAAATGAT
1 TGTTTTGCCCTTATGAGGTAAAATGAC
*
5901666 TGTTTTGCCCTTATGGGGTAAAATGAC
1 TGTTTTGCCCTTATGAGGTAAAATGAC
* *
5901693 TGTTTTGCCCTTATGGGGTAAAATGAT
1 TGTTTTGCCCTTATGAGGTAAAATGAC
*
5901720 TGTTTTGCCCTTA-GAGGGTAAAATGAT
1 TGTTTTGCCCTTATGA-GGTAAAATGAC
5901747 TGTTTTGCCCTTA-GAGGGTAAAATGAC
1 TGTTTTGCCCTTATGA-GGTAAAATGAC
*
5901774 TGTTTTGCCCTTATG-GGATAATATGAC
1 TGTTTTGCCCTTATGAGG-TAAAATGAC
*
5901801 TATTTT
1 TGTTTT
5901807 ACCCCTGTGT
Statistics
Matches: 249, Mismatches: 22, Indels: 8
0.89 0.08 0.03
Matches are distributed among these distances:
26 26 0.10
27 222 0.89
28 1 0.00
ACGTcount: A:0.24, C:0.14, G:0.23, T:0.40
Consensus pattern (27 bp):
TGTTTTGCCCTTATGAGGTAAAATGAC
Found at i:5901677 original size:81 final size:81
Alignment explanation
Indices: 5901501--5901806 Score: 447
Period size: 81 Copynumber: 3.8 Consensus size: 81
5901491 CCTAGACCCT
* * *
5901501 TGATTGTTTTGCCCTTATGAGGTAAAATGACTGTTTTGCCCTTAT-GAGAAAAATGACTGTTTTT
1 TGATTGTTTTGCCCTTATGAGGTAAAATGACTGTTTTGCCCTTATGGGGTAAAATGACTGTTTTG
5901565 CCCTTATGTGGTAAAA
66 CCCTTATGTGGTAAAA
* * * *
5901581 TGACTGTTTTTCCCTTATGAGGTAAAATGACTATTTTGCCCTTATGGGGTAAACTGACTGTTTTG
1 TGATTGTTTTGCCCTTATGAGGTAAAATGACTGTTTTGCCCTTATGGGGTAAAATGACTGTTTTG
*
5901646 CCGTTATGTGGTAAAA
66 CCCTTATGTGGTAAAA
* *
5901662 TGATTGTTTTGCCCTTATGGGGTAAAATGACTGTTTTGCCCTTATGGGGTAAAATGATTGTTTTG
1 TGATTGTTTTGCCCTTATGAGGTAAAATGACTGTTTTGCCCTTATGGGGTAAAATGACTGTTTTG
*
5901727 CCCTTA-GAGGGTAAAA
66 CCCTTATG-TGGTAAAA
* * *
5901743 TGATTGTTTTGCCCTTA-GAGGGTAAAATGACTGTTTTGCCCTTATGGGATAATATGACTATTTT
1 TGATTGTTTTGCCCTTATGA-GGTAAAATGACTGTTTTGCCCTTATGGGGTAAAATGACTGTTTT
5901807 ACCCCTGTGT
Statistics
Matches: 202, Mismatches: 21, Indels: 5
0.89 0.09 0.02
Matches are distributed among these distances:
80 44 0.22
81 158 0.78
ACGTcount: A:0.24, C:0.13, G:0.23, T:0.40
Consensus pattern (81 bp):
TGATTGTTTTGCCCTTATGAGGTAAAATGACTGTTTTGCCCTTATGGGGTAAAATGACTGTTTTG
CCCTTATGTGGTAAAA
Found at i:5905595 original size:31 final size:31
Alignment explanation
Indices: 5905554--5905617 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
5905544 CCTTTTCATA
*
5905554 TTTCATATTTCATAACACTGGGCCGAAGCCT
1 TTTCAAATTTCATAACACTGGGCCGAAGCCT
**
5905585 TTTCAAATTTCATATTACTGGGCCGAAGCCT
1 TTTCAAATTTCATAACACTGGGCCGAAGCCT
5905616 TT
1 TT
5905618 ACTGTAAACG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.25, C:0.23, G:0.16, T:0.36
Consensus pattern (31 bp):
TTTCAAATTTCATAACACTGGGCCGAAGCCT
Found at i:5905863 original size:49 final size:47
Alignment explanation
Indices: 5905825--5905955 Score: 190
Period size: 48 Copynumber: 2.7 Consensus size: 47
5905815 CTAGAGGCCT
*
5905825 AGCCTCTTTTAGTAACTGGGGCAAAAGCCCTTTTTATAACTGGGGCATA
1 AGCC-CTTTTA-TAACTGGGGCATAAGCCCTTTTTATAACTGGGGCATA
*
5905874 AGCCCTTTATCATAACTGGGGCATAAGCCCTTTATCATAACTGGGGCATA
1 AGCCCTTT-T-ATAACTGGGGCATAAGCCCTTT-TTATAACTGGGGCATA
*
5905924 AGCCCTTTAATAACTGGGGCATAAGCCCTTTT
1 AGCCCTTTTATAACTGGGGCATAAGCCCTTTT
5905956 GCACTTCCTC
Statistics
Matches: 76, Mismatches: 3, Indels: 8
0.87 0.03 0.09
Matches are distributed among these distances:
47 1 0.01
48 26 0.34
49 25 0.33
50 24 0.32
ACGTcount: A:0.27, C:0.23, G:0.21, T:0.30
Consensus pattern (47 bp):
AGCCCTTTTATAACTGGGGCATAAGCCCTTTTTATAACTGGGGCATA
Found at i:5905864 original size:24 final size:24
Alignment explanation
Indices: 5905837--5905955 Score: 186
Period size: 25 Copynumber: 4.9 Consensus size: 24
5905827 CCTCTTTTAG
* *
5905837 TAACTGGGGCAAAAGCCCTTTTTA
1 TAACTGGGGCATAAGCCCTTTTCA
5905861 TAACTGGGGCATAAGCCCTTTATCA
1 TAACTGGGGCATAAGCCCTTT-TCA
5905886 TAACTGGGGCATAAGCCCTTTATCA
1 TAACTGGGGCATAAGCCCTTT-TCA
*
5905911 TAACTGGGGCATAAGCCC-TTTAA
1 TAACTGGGGCATAAGCCCTTTTCA
5905934 TAACTGGGGCATAAGCCCTTTT
1 TAACTGGGGCATAAGCCCTTTT
5905956 GCACTTCCTC
Statistics
Matches: 90, Mismatches: 3, Indels: 4
0.93 0.03 0.04
Matches are distributed among these distances:
23 20 0.22
24 25 0.28
25 45 0.50
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.29
Consensus pattern (24 bp):
TAACTGGGGCATAAGCCCTTTTCA
Found at i:5906029 original size:20 final size:20
Alignment explanation
Indices: 5906001--5906071 Score: 97
Period size: 20 Copynumber: 3.5 Consensus size: 20
5905991 GCATTTATGA
* *
5906001 ACATCTCATGTCCATATCAT
1 ACATATCATGTGCATATCAT
5906021 ACATATCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
* *
5906041 ACATGTCATGTGCATATCAA
1 ACATATCATGTGCATATCAT
*
5906061 AAATATCATGT
1 ACATATCATGT
5906072 TTATCAAAAT
Statistics
Matches: 45, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 45 1.00
ACGTcount: A:0.35, C:0.21, G:0.10, T:0.34
Consensus pattern (20 bp):
ACATATCATGTGCATATCAT
Found at i:5906136 original size:25 final size:25
Alignment explanation
Indices: 5906108--5906155 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
5906098 ATATATAAAC
* * *
5906108 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
5906133 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
5906156 CATATTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:5907463 original size:27 final size:27
Alignment explanation
Indices: 5907411--5907648 Score: 174
Period size: 27 Copynumber: 8.7 Consensus size: 27
5907401 TTCATCCTAC
* * * *
5907411 AAGGGTGTTTTGGTAAATCTACAAACT
1 AAGGGTATTTCGGTAATTTTACAAACT
* ** *
5907438 AAGGGTATTTCAGTAATTTTGTAAACC
1 AAGGGTATTTCGGTAATTTTACAAACT
** ** * *
5907465 AATAGTATTTCTATAATTTTTAGAAAGTT
1 AAGGGTATTTCGGTAA-TTTTACAAA-CT
* *
5907494 AAGGGTATTTCTGTAACTTTGTA-AATC-
1 AAGGGTATTTCGGTAA-TTT-TACAAACT
* * * *
5907521 AGGGGTATTTTGGTAATTTAACAAATT
1 AAGGGTATTTCGGTAATTTTACAAACT
* * *
5907548 GAGGGTATTTCGGTAATTTCACAAACC
1 AAGGGTATTTCGGTAATTTTACAAACT
*
5907575 AAGGGTATTTTGGTAATTTTACAAACT
1 AAGGGTATTTCGGTAATTTTACAAACT
* *
5907602 AAGGGTATTTTGGTAATTTTACAAAAT
1 AAGGGTATTTCGGTAATTTTACAAACT
**
5907629 AAGGGTATTTTAGTAATTTT
1 AAGGGTATTTCGGTAATTTT
5907649 TTAAATCGAG
Statistics
Matches: 166, Mismatches: 40, Indels: 10
0.77 0.19 0.05
Matches are distributed among these distances:
25 1 0.01
26 5 0.03
27 133 0.80
28 7 0.04
29 18 0.11
30 2 0.01
ACGTcount: A:0.33, C:0.08, G:0.19, T:0.40
Consensus pattern (27 bp):
AAGGGTATTTCGGTAATTTTACAAACT
Found at i:5907648 original size:54 final size:54
Alignment explanation
Indices: 5907409--5907648 Score: 196
Period size: 54 Copynumber: 4.4 Consensus size: 54
5907399 ATTTCATCCT
* * * * ***
5907409 ACAAGGGTGTTTTGGTAAATCTACAAACTAAGGGTATTTCAGTAATTTTGTAAA
1 ACAAGGGTATTTTGGTAATTTTACAAACTAAGGGTATTTCGGTAATTTCACAAA
* ** * * * * **
5907463 CCAATAGTATTTCT-ATAATTTTTAGAAAGTTAAGGGTATTTCTGTAACTTT-GTAAA
1 ACAAGGGTATTT-TGGTAA-TTTTACAAA-CTAAGGGTATTTCGGTAA-TTTCACAAA
* * * * *
5907519 TCAGGGGTATTTTGGTAATTTAACAAATTGAGGGTATTTCGGTAATTTCACAAA
1 ACAAGGGTATTTTGGTAATTTTACAAACTAAGGGTATTTCGGTAATTTCACAAA
* * *
5907573 CCAAGGGTATTTTGGTAATTTTACAAACTAAGGGTATTTTGGTAATTTTACAAA
1 ACAAGGGTATTTTGGTAATTTTACAAACTAAGGGTATTTCGGTAATTTCACAAA
* *
5907627 ATAAGGGTATTTTAGTAATTTT
1 ACAAGGGTATTTTGGTAATTTT
5907649 TTAAATCGAG
Statistics
Matches: 149, Mismatches: 31, Indels: 12
0.78 0.16 0.06
Matches are distributed among these distances:
53 3 0.02
54 96 0.64
55 15 0.10
56 32 0.21
57 3 0.02
ACGTcount: A:0.33, C:0.08, G:0.19, T:0.40
Consensus pattern (54 bp):
ACAAGGGTATTTTGGTAATTTTACAAACTAAGGGTATTTCGGTAATTTCACAAA
Found at i:5907670 original size:27 final size:27
Alignment explanation
Indices: 5907640--5907851 Score: 268
Period size: 27 Copynumber: 7.9 Consensus size: 27
5907630 AGGGTATTTT
* *
5907640 AGTAATTTTTTAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* *
5907667 AGTAATTCTGTAAATCAAGGGTAAAAT
1 AGTAATTCTGTAAATCGAGGGTAAAAC
*
5907694 AGTAATTCTATAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
*
5907721 GGTAATTCTGTAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* *
5907748 GGTAATTCTGTAAGTCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
*
5907775 -GATAATTATGTAAATC-AGGGGTAAAAC
1 AG-TAATTCTGTAAATCGA-GGGTAAAAC
* *
5907802 AGTAATTATGTAAATCGGGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
*
5907829 -GATAATTCTGTAAATCAAGGGTA
1 AG-TAATTCTGTAAATCGAGGGTA
5907852 CTTTGGTAAT
Statistics
Matches: 164, Mismatches: 16, Indels: 10
0.86 0.08 0.05
Matches are distributed among these distances:
26 3 0.02
27 160 0.98
28 1 0.01
ACGTcount: A:0.41, C:0.09, G:0.23, T:0.28
Consensus pattern (27 bp):
AGTAATTCTGTAAATCGAGGGTAAAAC
Found at i:5907687 original size:81 final size:81
Alignment explanation
Indices: 5907612--5907905 Score: 256
Period size: 81 Copynumber: 3.6 Consensus size: 81
5907602 AAGGGTATTT
* **** *
5907612 TGGTAATTTTACAAAAT-AAGGGTATTTTAGTAATTTTTTAAATCGAGGGTAAAACAGTAATTCT
1 TGGTAATTTTACTAAATCAAGGGTAAAACAGTAATTTTGTAAATCGAGGGTAAAAC-GTAATTCT
5907676 GTAAATCAAGGGTAAAA
65 GTAAATCAAGGGTAAAA
* * * * *
5907693 TAGTAATTCTA-TAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACGGTAATTCT
1 TGGTAATTTTACTAAATCAAGGGTAAAACAGTAATTTTGTAAATCGAGGGTAAAAC-GTAATTCT
* *
5907757 GTAAGTCGAGGGTAAAA
65 GTAAATCAAGGGTAAAA
* * * * * * *
5907774 CGATAATTAT-GTAAATCAGGGGTAAAACAGTAATTATGTAAATCGGGGGTAAAACGATAATTCT
1 TGGTAATTTTACTAAATCAAGGGTAAAACAGTAATTTTGTAAATCGAGGGTAAAACG-TAATTCT
***
5907838 GTAAATCAAGGGTACTT
65 GTAAATCAAGGGTAAAA
* *** **
5907855 TGGTAATTTTAC-AAGTCGAA-GGTATTTCAGTAATTTTACAAATCGAGGGTA
1 TGGTAATTTTACTAAATC-AAGGGTAAAACAGTAATTTTGTAAATCGAGGGTA
5907906 TTTCAGTATT
Statistics
Matches: 167, Mismatches: 41, Indels: 10
0.77 0.19 0.05
Matches are distributed among these distances:
80 5 0.03
81 161 0.96
82 1 0.01
ACGTcount: A:0.38, C:0.09, G:0.22, T:0.31
Consensus pattern (81 bp):
TGGTAATTTTACTAAATCAAGGGTAAAACAGTAATTTTGTAAATCGAGGGTAAAACGTAATTCTG
TAAATCAAGGGTAAAA
Found at i:5907878 original size:27 final size:27
Alignment explanation
Indices: 5907857--5907946 Score: 119
Period size: 27 Copynumber: 3.3 Consensus size: 27
5907847 GGGTACTTTG
*
5907857 GTAATTTTACAAGTCGAAGGTATTTCA
1 GTAATTTTACAAATCGAAGGTATTTCA
*
5907884 GTAATTTTACAAATCGAGGGTATTTCA
1 GTAATTTTACAAATCGAAGGTATTTCA
* * *
5907911 GTATTTTTACAAA-CTAAGGGTATTTCG
1 GTAATTTTACAAATCGAA-GGTATTTCA
5907938 GTAATTTTA
1 GTAATTTTA
5907947 GTAAACTAAA
Statistics
Matches: 55, Mismatches: 7, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
26 2 0.04
27 53 0.96
ACGTcount: A:0.32, C:0.10, G:0.18, T:0.40
Consensus pattern (27 bp):
GTAATTTTACAAATCGAAGGTATTTCA
Found at i:5907898 original size:54 final size:54
Alignment explanation
Indices: 5907840--5907946 Score: 128
Period size: 54 Copynumber: 2.0 Consensus size: 54
5907830 ATAATTCTGT
* *
5907840 AAATCAAGGGTACTTT-GGTAATTTTACAAGTCGAA-GGTATTTCAGTAATTTTAC
1 AAATCAAGGGTA-TTTCAGTAATTTTACAA-ACGAAGGGTATTTCAGTAATTTTAC
* * * *
5907894 AAATCGAGGGTATTTCAGTATTTTTACAAACTAAGGGTATTTCGGTAATTTTA
1 AAATCAAGGGTATTTCAGTAATTTTACAAACGAAGGGTATTTCAGTAATTTTA
5907947 GTAAACTAAA
Statistics
Matches: 45, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
53 6 0.13
54 39 0.87
ACGTcount: A:0.33, C:0.10, G:0.19, T:0.38
Consensus pattern (54 bp):
AAATCAAGGGTATTTCAGTAATTTTACAAACGAAGGGTATTTCAGTAATTTTAC
Found at i:5907960 original size:27 final size:27
Alignment explanation
Indices: 5907857--5907961 Score: 90
Period size: 27 Copynumber: 3.9 Consensus size: 27
5907847 GGGTACTTTG
* *
5907857 GTAATTTTACAAGTCGAAG-GTATTTCA
1 GTAATTTTACAA-ACTAAGAGTATTTCA
* *
5907884 GTAATTTTACAAA-TCGAGGGTATTTCA
1 GTAATTTTACAAACT-AAGAGTATTTCA
* * *
5907911 GTATTTTTACAAACTAAGGGTATTTCG
1 GTAATTTTACAAACTAAGAGTATTTCA
*
5907938 GTAATTTTAGTAAACTAA-AGTATT
1 GTAATTTTA-CAAACTAAGAGTATT
5907962 CTAAACATGG
Statistics
Matches: 65, Mismatches: 9, Indels: 8
0.79 0.11 0.10
Matches are distributed among these distances:
26 2 0.03
27 55 0.85
28 8 0.12
ACGTcount: A:0.34, C:0.10, G:0.17, T:0.39
Consensus pattern (27 bp):
GTAATTTTACAAACTAAGAGTATTTCA
Found at i:5910742 original size:22 final size:22
Alignment explanation
Indices: 5910711--5910754 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 22
5910701 ATAGGAAAGA
*
5910711 AAACTACATAAGCATATAATGC
1 AAACTACATAAGCACATAATGC
*
5910733 AAACTTCATAAGCACATAATGC
1 AAACTACATAAGCACATAATGC
5910755 TTAGTAAGTT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.48, C:0.20, G:0.09, T:0.23
Consensus pattern (22 bp):
AAACTACATAAGCACATAATGC
Found at i:5915665 original size:46 final size:47
Alignment explanation
Indices: 5915531--5915667 Score: 131
Period size: 46 Copynumber: 2.9 Consensus size: 47
5915521 ATTATGAGAG
* *
5915531 CCAGTGTAAGACCATGTCTGGGACATGGCATCGAC-ATTTAGATG-AGAG
1 CCAGTGTAAGA-CATGTCTGGGACAT-GCATCGACTA-TGAGATGTAGAA
* ** * *
5915579 CTAGAATAAGACATG-CTTGGGACATGCATCAGTCT-CGAGATGTA-AA
1 CCAGTGTAAGACATGTC-TGGGACATGCATC-GACTATGAGATGTAGAA
5915625 CCAGTGTAAGACATGTCTGGGACATGCATCGACTATGAGATGT
1 CCAGTGTAAGACATGTCTGGGACATGCATCGACTATGAGATGT
5915668 GTCAGTTCAA
Statistics
Matches: 71, Mismatches: 12, Indels: 14
0.73 0.12 0.14
Matches are distributed among these distances:
45 3 0.04
46 44 0.62
47 16 0.23
48 8 0.11
ACGTcount: A:0.31, C:0.18, G:0.27, T:0.24
Consensus pattern (47 bp):
CCAGTGTAAGACATGTCTGGGACATGCATCGACTATGAGATGTAGAA
Found at i:5915841 original size:49 final size:46
Alignment explanation
Indices: 5915716--5915894 Score: 180
Period size: 49 Copynumber: 3.7 Consensus size: 46
5915706 GTATAGAGAT
* * *
5915716 GTCAGTGTAAGACCATGTCTGGGACATGGCATTGGCACTGATATGTGAGA
1 GTCAGTGTAAGACCATGTCTGGGACATGGCA-TCGC-CTCA-AT-TGATA
*
5915766 G-CTAGTGTAAGACCATGTCTGGGACATGGCGTCAGCCTCAATTTCGATA
1 GTC-AGTGTAAGACCATGTCTGGGACATGGCATC-GCCTCAA-TT-GATA
* * *
5915815 GTCAGTGTAAGACCATGTCTGGGACATGGCATCGACTTAATGGATGA
1 GTCAGTGTAAGACCATGTCTGGGACATGGCATCGCCTCAATTGAT-A
* * *
5915862 GCCAATGTAAGACCATGTCTGGGACATTGCATC
1 GTCAGTGTAAGACCATGTCTGGGACATGGCATC
5915895 AACACTATAC
Statistics
Matches: 112, Mismatches: 11, Indels: 15
0.81 0.08 0.11
Matches are distributed among these distances:
46 3 0.03
47 32 0.29
48 7 0.06
49 39 0.35
50 31 0.28
ACGTcount: A:0.26, C:0.20, G:0.28, T:0.26
Consensus pattern (46 bp):
GTCAGTGTAAGACCATGTCTGGGACATGGCATCGCCTCAATTGATA
Found at i:5915894 original size:47 final size:47
Alignment explanation
Indices: 5915528--5915894 Score: 199
Period size: 47 Copynumber: 7.7 Consensus size: 47
5915518 CACATTATGA
*
5915528 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGACATTTAGAT-GA-
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGAC--TCA-ATGGAT
* ** *
5915576 GAGCTAGAATAAGA-CATG-CTTGGGACAT-GCATCAGTCTCGAGAT-G-T
1 GAGCCAGTGTAAGACCATGTC-TGGGACATGGCATC-GACTC-A-ATGGAT
* *
5915622 AAACCAGTGTAAGA-CATGTCTGGGACAT-GCATCGACT--ATGAGAT
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGACTCAATG-GAT
* * ** * * * ** *
5915666 GTGTCAGT-TCAAGACCATGT-TCGAAACATAGCATCAATATGTATAGA-
1 GAGCCAGTGT-AAGACCATGTCT-GGGACATGGCATCGA-CTCAATGGAT
* * *
5915713 GATGTCAGTGTAAGACCATGTCTGGGACATGGCATTGGCACTGATATGTGA-
1 GA-GCCAGTGTAAGACCATGTCTGGGACATGGCA-TCG-ACTCA-ATG-GAT
* * * *
5915764 GAGCTAGTGTAAGACCATGTCTGGGACATGGCGTCAGCCTCAATTTCGAT
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATC-GACTCAA--TGGAT
* *
5915814 -AGTCAGTGTAAGACCATGTCTGGGACATGGCATCGACTTAATGGAT
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGACTCAATGGAT
* *
5915860 GAGCCAATGTAAGACCATGTCTGGGACATTGCATC
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATC
5915895 AACACTATAC
Statistics
Matches: 247, Mismatches: 45, Indels: 55
0.71 0.13 0.16
Matches are distributed among these distances:
41 2 0.01
43 2 0.01
44 10 0.04
45 14 0.06
46 47 0.19
47 48 0.19
48 43 0.17
49 44 0.18
50 33 0.13
51 4 0.02
ACGTcount: A:0.29, C:0.19, G:0.27, T:0.25
Consensus pattern (47 bp):
GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGACTCAATGGAT
Found at i:5919573 original size:42 final size:42
Alignment explanation
Indices: 5919524--5919615 Score: 139
Period size: 42 Copynumber: 2.2 Consensus size: 42
5919514 TGGCCCTTAG
* ** *
5919524 GCCCATTTCAATATCACATGTAATGTCAATGGATGTATGCAA
1 GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
*
5919566 GTCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
1 GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
5919608 GCCCATTT
1 GCCCATTT
5919616 GGAGAGACTA
Statistics
Matches: 44, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
42 44 1.00
ACGTcount: A:0.35, C:0.21, G:0.14, T:0.30
Consensus pattern (42 bp):
GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
Found at i:5920757 original size:27 final size:27
Alignment explanation
Indices: 5920727--5920825 Score: 90
Period size: 27 Copynumber: 3.6 Consensus size: 27
5920717 GTAAGTCTAC
*
5920727 AAACCAAGGGTATTTCAATAATTTTGT
1 AAACCAAGGGTATTTCTATAATTTTGT
* * * **
5920754 AAACCAATGGTGTTCCTATAATTTTCAAA
1 AAACCAAGGGTATTTCTATAATTTT--GT
*
5920783 AAAGTCAAGGGTATTTCTATAATTTTGT
1 AAA-CCAAGGGTATTTCTATAATTTTGT
* *
5920811 AAATCAAGGTTATTT
1 AAACCAAGGGTATTT
5920826 TGGTAATTTT
Statistics
Matches: 56, Mismatches: 13, Indels: 6
0.75 0.17 0.08
Matches are distributed among these distances:
27 32 0.57
28 3 0.05
29 3 0.05
30 18 0.32
ACGTcount: A:0.36, C:0.11, G:0.14, T:0.38
Consensus pattern (27 bp):
AAACCAAGGGTATTTCTATAATTTTGT
Found at i:5920953 original size:27 final size:27
Alignment explanation
Indices: 5920919--5921010 Score: 132
Period size: 27 Copynumber: 3.4 Consensus size: 27
5920909 GTAAATTCAC
5920919 AATCGAGGGTAAAACGGTAATTTTGTA
1 AATCGAGGGTAAAACGGTAATTTTGTA
*
5920946 AA-CTGAGGGTAAAATGGTAATTTTGTA
1 AATC-GAGGGTAAAACGGTAATTTTGTA
* * *
5920973 AATCGAGGGTAAAACGATAATTCTATA
1 AATCGAGGGTAAAACGGTAATTTTGTA
5921000 AATCGAGGGTA
1 AATCGAGGGTA
5921011 CTTTGGTAAT
Statistics
Matches: 58, Mismatches: 5, Indels: 4
0.87 0.07 0.06
Matches are distributed among these distances:
26 1 0.02
27 56 0.97
28 1 0.02
ACGTcount: A:0.39, C:0.08, G:0.25, T:0.28
Consensus pattern (27 bp):
AATCGAGGGTAAAACGGTAATTTTGTA
Found at i:5921035 original size:54 final size:54
Alignment explanation
Indices: 5920919--5921035 Score: 137
Period size: 54 Copynumber: 2.2 Consensus size: 54
5920909 GTAAATTCAC
* * * **
5920919 AATCGAGGGTAAAACGGTAATTTTGTAAACTGAGGGTAAAATGGTAATTTTGTA
1 AATCGAGGGTAAAACGATAATTCTATAAACTGAGGGTAAAATGGTAATTTTACA
***
5920973 AATCGAGGGTAAAACGATAATTCTATAAA-TCGAGGGTACTTTGGTAATTTTACA
1 AATCGAGGGTAAAACGATAATTCTATAAACT-GAGGGTAAAATGGTAATTTTACA
*
5921027 AATTGAGGG
1 AATCGAGGG
5921036 CATTTCAATA
Statistics
Matches: 53, Mismatches: 9, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
53 1 0.02
54 52 0.98
ACGTcount: A:0.37, C:0.08, G:0.25, T:0.31
Consensus pattern (54 bp):
AATCGAGGGTAAAACGATAATTCTATAAACTGAGGGTAAAATGGTAATTTTACA
Found at i:5923400 original size:42 final size:42
Alignment explanation
Indices: 5923353--5923444 Score: 148
Period size: 42 Copynumber: 2.2 Consensus size: 42
5923343 TGGCCCTTAG
* ** *
5923353 GCCCATTTCAATATCACATGTAATGTCAATGGATGTATGCAA
1 GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
5923395 GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
1 GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
5923437 GCCCATTT
1 GCCCATTT
5923445 GGGGAGACTA
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
42 46 1.00
ACGTcount: A:0.35, C:0.22, G:0.14, T:0.29
Consensus pattern (42 bp):
GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
Found at i:5924504 original size:26 final size:26
Alignment explanation
Indices: 5924439--5924539 Score: 78
Period size: 27 Copynumber: 3.7 Consensus size: 26
5924429 GGCGTATTCA
5924439 TCATTTTACCATACAAGGGTATTACGG
1 TCATTTTACC-TACAAGGGTATTACGG
* *
5924466 TCACTTTACCCTACAGGGGCT-TTACGG
1 TCATTTTA-CCTACAAGGG-TATTACGG
* * ***
5924493 TCTTTTTACCTATTAAGGGTATTTTAG
1 TCATTTTACCTA-CAAGGGTATTACGG
*
5924520 TCATTTCATCCTACAAGGGT
1 TCATTTTA-CCTACAAGGGT
5924540 GTTTTGGTAA
Statistics
Matches: 57, Mismatches: 12, Indels: 10
0.72 0.15 0.13
Matches are distributed among these distances:
26 5 0.09
27 45 0.79
28 7 0.12
ACGTcount: A:0.24, C:0.21, G:0.18, T:0.38
Consensus pattern (26 bp):
TCATTTTACCTACAAGGGTATTACGG
Found at i:5924586 original size:27 final size:27
Alignment explanation
Indices: 5924556--5924642 Score: 84
Period size: 27 Copynumber: 3.1 Consensus size: 27
5924546 GTAAGTCTAC
*
5924556 AAACCAAGGGTATTTCAATAATTTTGT
1 AAACCAAGGGTATTTCTATAATTTTGT
* * * **
5924583 AAACCAATGGTGTTCCTATAATTTTCAAA
1 AAACCAAGGGTATTTCTATAATTTT--GT
*
5924612 AAAGTCAAGGGTATTTCTATAATTTTGT
1 AAA-CCAAGGGTATTTCTATAATTTTGT
5924640 AAA
1 AAA
5924643 TCAGGGTTAT
Statistics
Matches: 45, Mismatches: 12, Indels: 5
0.73 0.19 0.08
Matches are distributed among these distances:
27 21 0.47
28 3 0.07
29 3 0.07
30 18 0.40
ACGTcount: A:0.38, C:0.11, G:0.14, T:0.37
Consensus pattern (27 bp):
AAACCAAGGGTATTTCTATAATTTTGT
Found at i:5924661 original size:27 final size:25
Alignment explanation
Indices: 5924631--5924716 Score: 82
Period size: 27 Copynumber: 3.2 Consensus size: 25
5924621 GGTATTTCTA
5924631 TAATTTTGTAAATCAGGGTTATTTTGG
1 TAATTTT-TAAATCAGGG-TATTTTGG
* * *
5924658 TAATTTTACAAATTGAGGGTATTTCGG
1 TAATTTT-TAAA-TCAGGGTATTTTGG
*
5924685 TAATTTCTTAAACCAGTGGTATTTTGG
1 TAATTT-TTAAATCAG-GGTATTTTGG
5924712 TAATT
1 TAATT
5924717 CTATCCTACA
Statistics
Matches: 48, Mismatches: 8, Indels: 6
0.77 0.13 0.10
Matches are distributed among these distances:
26 2 0.04
27 40 0.83
28 6 0.12
ACGTcount: A:0.28, C:0.07, G:0.20, T:0.45
Consensus pattern (25 bp):
TAATTTTTAAATCAGGGTATTTTGG
Found at i:5924782 original size:27 final size:27
Alignment explanation
Indices: 5924748--5924839 Score: 123
Period size: 27 Copynumber: 3.4 Consensus size: 27
5924738 GTAATTTCAC
*
5924748 AATCGAGGGTAAAACGGTAATTTTGTA
1 AATCGAGGGTAAAACGGTAATTTTATA
*
5924775 AA-CTGAGGGTAAAATGGTAATTTTATA
1 AATC-GAGGGTAAAACGGTAATTTTATA
* * *
5924802 AATCGCGGGTAAAACGATAATTCTATA
1 AATCGAGGGTAAAACGGTAATTTTATA
5924829 AATCGAGGGTA
1 AATCGAGGGTA
5924840 CTTTGGTAAT
Statistics
Matches: 56, Mismatches: 7, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
26 1 0.02
27 54 0.96
28 1 0.02
ACGTcount: A:0.39, C:0.09, G:0.24, T:0.28
Consensus pattern (27 bp):
AATCGAGGGTAAAACGGTAATTTTATA
Found at i:5925773 original size:95 final size:95
Alignment explanation
Indices: 5925655--5925847 Score: 386
Period size: 95 Copynumber: 2.0 Consensus size: 95
5925645 TAATTTAAAA
5925655 GCCCTAATCCAAGCATTCAGGTTTTTTTTCTCTTAATACCAAAATTTTTGCTAAAGCCCAAGTTT
1 GCCCTAATCCAAGCATTCAGGTTTTTTTTCTCTTAATACCAAAATTTTTGCTAAAGCCCAAGTTT
5925720 GAACCCAAGATTTCTCTAACACTTCTCAGG
66 GAACCCAAGATTTCTCTAACACTTCTCAGG
5925750 GCCCTAATCCAAGCATTCAGGTTTTTTTTCTCTTAATACCAAAATTTTTGCTAAAGCCCAAGTTT
1 GCCCTAATCCAAGCATTCAGGTTTTTTTTCTCTTAATACCAAAATTTTTGCTAAAGCCCAAGTTT
5925815 GAACCCAAGATTTCTCTAACACTTCTCAGG
66 GAACCCAAGATTTCTCTAACACTTCTCAGG
5925845 GCC
1 GCC
5925848 ATTAACCACC
Statistics
Matches: 98, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
95 98 1.00
ACGTcount: A:0.28, C:0.26, G:0.12, T:0.34
Consensus pattern (95 bp):
GCCCTAATCCAAGCATTCAGGTTTTTTTTCTCTTAATACCAAAATTTTTGCTAAAGCCCAAGTTT
GAACCCAAGATTTCTCTAACACTTCTCAGG
Found at i:5925985 original size:80 final size:80
Alignment explanation
Indices: 5925863--5926023 Score: 322
Period size: 80 Copynumber: 2.0 Consensus size: 80
5925853 CCACCAAAGC
5925863 AGACATTTAATTATGTCATTTCATTTCACAATTAAATACCTATATACAACCTCCTTATGGACCCA
1 AGACATTTAATTATGTCATTTCATTTCACAATTAAATACCTATATACAACCTCCTTATGGACCCA
5925928 CACTCAAAGCCCGAT
66 CACTCAAAGCCCGAT
5925943 AGACATTTAATTATGTCATTTCATTTCACAATTAAATACCTATATACAACCTCCTTATGGACCCA
1 AGACATTTAATTATGTCATTTCATTTCACAATTAAATACCTATATACAACCTCCTTATGGACCCA
5926008 CACTCAAAGCCCGAT
66 CACTCAAAGCCCGAT
5926023 A
1 A
5926024 CTTCTAGGCC
Statistics
Matches: 81, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
80 81 1.00
ACGTcount: A:0.35, C:0.26, G:0.07, T:0.31
Consensus pattern (80 bp):
AGACATTTAATTATGTCATTTCATTTCACAATTAAATACCTATATACAACCTCCTTATGGACCCA
CACTCAAAGCCCGAT
Found at i:5928296 original size:16 final size:16
Alignment explanation
Indices: 5928275--5928320 Score: 65
Period size: 16 Copynumber: 2.9 Consensus size: 16
5928265 TCGGCAGATC
*
5928275 CCGAAAAGCCGAAATG
1 CCGAAAAGCAGAAATG
5928291 CCGAAAAGCAGAAATG
1 CCGAAAAGCAGAAATG
* *
5928307 CCAAAAAGCTGAAA
1 CCGAAAAGCAGAAA
5928321 AACTGAAAGT
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 27 1.00
ACGTcount: A:0.50, C:0.22, G:0.22, T:0.07
Consensus pattern (16 bp):
CCGAAAAGCAGAAATG
Found at i:5928469 original size:17 final size:19
Alignment explanation
Indices: 5928431--5928471 Score: 59
Period size: 19 Copynumber: 2.3 Consensus size: 19
5928421 GTTGTGAAAT
*
5928431 GGCTGAATGGGCCAGAATA
1 GGCTGAATGGACCAGAATA
5928450 GGCTGAATGGACC-G-ATA
1 GGCTGAATGGACCAGAATA
5928467 GGCTG
1 GGCTG
5928472 TTGGGCCTAT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
17 8 0.38
18 1 0.05
19 12 0.57
ACGTcount: A:0.27, C:0.17, G:0.39, T:0.17
Consensus pattern (19 bp):
GGCTGAATGGACCAGAATA
Found at i:5928612 original size:28 final size:28
Alignment explanation
Indices: 5928541--5928647 Score: 119
Period size: 28 Copynumber: 3.8 Consensus size: 28
5928531 AGCATAACTG
* *
5928541 TAAATGTGATTGGGCCTAAT-GGTCGTA
1 TAAATGTGATTGGGCCTAATGGGACATA
* * *
5928568 TAAATATGATTTAGGCCTAATGGGACACA
1 TAAATGTGA-TTGGGCCTAATGGGACATA
*
5928597 TAAATGTGATTGGGCCTAATGGGCCATA
1 TAAATGTGATTGGGCCTAATGGGACATA
*
5928625 TGAAAT-AGATTGGGCCTAATGGG
1 T-AAATGTGATTGGGCCTAATGGG
5928648 TTATATGCAA
Statistics
Matches: 67, Mismatches: 10, Indels: 5
0.82 0.12 0.06
Matches are distributed among these distances:
27 8 0.12
28 43 0.64
29 16 0.24
ACGTcount: A:0.31, C:0.12, G:0.28, T:0.29
Consensus pattern (28 bp):
TAAATGTGATTGGGCCTAATGGGACATA
Found at i:5928641 original size:56 final size:56
Alignment explanation
Indices: 5928541--5928647 Score: 155
Period size: 56 Copynumber: 1.9 Consensus size: 56
5928531 AGCATAACTG
* *
5928541 TAAATGTGATTGGGCCTAATGGTCGTATAAATATGATTTAGGCCTAATGGGACACA
1 TAAATGTGATTGGGCCTAATGGCCATATAAATATGATTTAGGCCTAATGGGACACA
*
5928597 TAAATGTGATTGGGCCTAATGGGCCATATGAAATA-GA-TTGGGCCTAATGGG
1 TAAATGTGATTGGGCCTAAT-GGCCATAT-AAATATGATTTAGGCCTAATGGG
5928648 TTATATGCAA
Statistics
Matches: 46, Mismatches: 3, Indels: 4
0.87 0.06 0.08
Matches are distributed among these distances:
56 33 0.72
57 8 0.17
58 5 0.11
ACGTcount: A:0.31, C:0.12, G:0.28, T:0.29
Consensus pattern (56 bp):
TAAATGTGATTGGGCCTAATGGCCATATAAATATGATTTAGGCCTAATGGGACACA
Found at i:5930267 original size:88 final size:86
Alignment explanation
Indices: 5930161--5930334 Score: 267
Period size: 88 Copynumber: 2.0 Consensus size: 86
5930151 ATAAATATAT
* * * *
5930161 CAAAATATAGAACTCCTTTTGTTTCTCTGTTTCCTTTATATGAAAATAGACTCATTTAGCTTTAA
1 CAAAATATAGAACTCCTTTTCTTGCTATGTTTCCTTTATATGAAAAT--ACTCATTAAGCTTTAA
*
5930226 TTTAATATCTCATTCAGTCTCTG
64 TTCAATATCTCATTCAGTCTCTG
* *
5930249 CAAAATATGGAACTCCTTTTCTTGCTATGTTTCTTTTATATGAAAATACTCATTAAGCTTTAATT
1 CAAAATATAGAACTCCTTTTCTTGCTATGTTTCCTTTATATGAAAATACTCATTAAGCTTTAATT
5930314 CAATATCTCATTCAGTCTCTG
66 CAATATCTCATTCAGTCTCTG
5930335 ATTAAATTTA
Statistics
Matches: 79, Mismatches: 7, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
86 37 0.47
88 42 0.53
ACGTcount: A:0.29, C:0.18, G:0.09, T:0.44
Consensus pattern (86 bp):
CAAAATATAGAACTCCTTTTCTTGCTATGTTTCCTTTATATGAAAATACTCATTAAGCTTTAATT
CAATATCTCATTCAGTCTCTG
Found at i:5930871 original size:67 final size:64
Alignment explanation
Indices: 5930729--5930912 Score: 210
Period size: 67 Copynumber: 2.8 Consensus size: 64
5930719 ATAGAGTTTG
* * * * * * *
5930729 GCTCTCTTGTAC-ACATGGTGAACACTCAGTACCACCCATGTGACCTAGCCA-ATTTATCTCGTA
1 GCTCTCTTGT-CTACATGGTGTACACACAGGACCACCCATGCGACCTAGCTACATATATCCCGTA
* *
5930792 GCTCTCTTGTCTACATGGTGTCCTTCACCAGGAGCCACCCATGCGACCTAGCTACATATATCCCG
1 GCTCTCTTGTCTACATGGTGTAC-ACA-CAGGA-CCACCCATGCGACCTAGCTACATATATCCCG
5930857 TA
63 TA
* * *
5930859 GCTCTCTTGTCTACATGGTGTACACATAGTATCACCCATGCGACCTAGCTACAT
1 GCTCTCTTGTCTACATGGTGTACACACAGGACCACCCATGCGACCTAGCTACAT
5930913 CATAATGTCT
Statistics
Matches: 102, Mismatches: 14, Indels: 9
0.82 0.11 0.07
Matches are distributed among these distances:
62 1 0.01
63 19 0.19
64 23 0.23
65 7 0.07
66 20 0.20
67 32 0.31
ACGTcount: A:0.23, C:0.32, G:0.17, T:0.28
Consensus pattern (64 bp):
GCTCTCTTGTCTACATGGTGTACACACAGGACCACCCATGCGACCTAGCTACATATATCCCGTA
Found at i:5931197 original size:283 final size:284
Alignment explanation
Indices: 5930690--5931257 Score: 1021
Period size: 283 Copynumber: 2.0 Consensus size: 284
5930680 CTCGATACTT
* * *
5930690 GGTGGTTTCAGCACATAGCTCTACCCATTATAGAGTTTGGCTCTCTTGTACACATGGTGAACACT
1 GGTGGTTTCAGCACATAGCTCCACCCATCATAGAGTTCGGCTCTCTTGTACACATGGTGAACACT
*
5930755 CAGTACCACCCATGTGACCTAGCCAATTTATCTCGTAGCTCTCTTGTCTACATGGTGTCCTTCAC
66 CAGTACCACCCATGTGACATAGCCAATTTATCTCGTAGCTCTCTTGTCTACATGGTGTCCTTCAC
* *
5930820 CAGGAGCCACCCATGCGACCTAGCTACATATATCCCGTAGCTCTCTTGTCTACATGGTGTACACA
131 CAGGAGCCACCCATGCAACCTAGCTACATATATCCCGAAGCTCTCTTGTCTACATGGTGTACACA
5930885 TAGTATCACCCATGCGACCTAGCTACATCATAATGTCTTGTAGCT-TCTTGTACACATGATGTGC
196 TAGTATCACCCATGCGACCTAGCTACATCATAATGTCTTGTAGCTCTCTTGTACACATGATGTGC
5930949 ACTCAGCACCATACATGTGACCTA
261 ACTCAGCACCATACATGTGACCTA
* *
5930973 GGTGGTTTCAGTACATAGCTCCACCCATCATATAGTTCGGCTCTCTTGTACACATGGTGAACACT
1 GGTGGTTTCAGCACATAGCTCCACCCATCATAGAGTTCGGCTCTCTTGTACACATGGTGAACACT
5931038 CAGTACCACCCATGTGACATAGCCAATTTATCTCGTAGCTCTCTTGTCTACATGGTGTCCTTCAC
66 CAGTACCACCCATGTGACATAGCCAATTTATCTCGTAGCTCTCTTGTCTACATGGTGTCCTTCAC
* *
5931103 CTGGAGCCACGCATGCAACCTAGCTACATATATCCCGAAGCTCTCTTGTCTACATGGTGTACACA
131 CAGGAGCCACCCATGCAACCTAGCTACATATATCCCGAAGCTCTCTTGTCTACATGGTGTACACA
*
5931168 TAGTATCACCCATGCGACCTAGCTACATCATAATGTCTTGTAGCTCTCTTGTACATATGATGTGC
196 TAGTATCACCCATGCGACCTAGCTACATCATAATGTCTTGTAGCTCTCTTGTACACATGATGTGC
*
5931233 ACTCAGCACCATACATGTGGCCTA
261 ACTCAGCACCATACATGTGACCTA
5931257 G
1 G
5931258 CTACAGACTA
Statistics
Matches: 272, Mismatches: 12, Indels: 1
0.95 0.04 0.00
Matches are distributed among these distances:
283 230 0.85
284 42 0.15
ACGTcount: A:0.24, C:0.29, G:0.18, T:0.30
Consensus pattern (284 bp):
GGTGGTTTCAGCACATAGCTCCACCCATCATAGAGTTCGGCTCTCTTGTACACATGGTGAACACT
CAGTACCACCCATGTGACATAGCCAATTTATCTCGTAGCTCTCTTGTCTACATGGTGTCCTTCAC
CAGGAGCCACCCATGCAACCTAGCTACATATATCCCGAAGCTCTCTTGTCTACATGGTGTACACA
TAGTATCACCCATGCGACCTAGCTACATCATAATGTCTTGTAGCTCTCTTGTACACATGATGTGC
ACTCAGCACCATACATGTGACCTA
Found at i:5932034 original size:92 final size:92
Alignment explanation
Indices: 5931893--5932075 Score: 296
Period size: 92 Copynumber: 2.0 Consensus size: 92
5931883 TATTTTACTT
*
5931893 ATTTAATTAATATACTATTCAAAACAGTCCTTAACTCAAACTTTGGAAAAATTACAATTCGT-CC
1 ATTTAATTAATATACTATTCAAAACAGTCCTTAACTCAAACTTTAGAAAAATTACAATT-GTGCC
*
5931957 CCGAAACTTTTGCATATTTATACTTTTC
65 CCGAAACTTTTGCATATTTACACTTTTC
* * *
5931985 ATTTAATTAATGTACTATTCAAAACATTCCTTAACTCAAACTTTAGAAAAATTACAATTTTGCCC
1 ATTTAATTAATATACTATTCAAAACAGTCCTTAACTCAAACTTTAGAAAAATTACAATTGTGCCC
*
5932050 CTAAACTTTTGCATATTTACACTTTT
66 CGAAACTTTTGCATATTTACACTTTT
5932076 GCCCCTAGGC
Statistics
Matches: 84, Mismatches: 6, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
91 1 0.01
92 83 0.99
ACGTcount: A:0.36, C:0.19, G:0.05, T:0.39
Consensus pattern (92 bp):
ATTTAATTAATATACTATTCAAAACAGTCCTTAACTCAAACTTTAGAAAAATTACAATTGTGCCC
CGAAACTTTTGCATATTTACACTTTTC
Found at i:5932056 original size:30 final size:30
Alignment explanation
Indices: 5932022--5932082 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
5932012 TCCTTAACTC
5932022 AAACTTTAGAAAAATTACAATTTTGCCCCT
1 AAACTTTAGAAAAATTACAATTTTGCCCCT
* * * * *
5932052 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTAGAAAAATTACAATTTTGCCCCT
5932082 A
1 A
5932083 GGCTCGGAAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.33, C:0.23, G:0.07, T:0.38
Consensus pattern (30 bp):
AAACTTTAGAAAAATTACAATTTTGCCCCT
Found at i:5932849 original size:89 final size:89
Alignment explanation
Indices: 5932711--5932887 Score: 345
Period size: 89 Copynumber: 2.0 Consensus size: 89
5932701 CAAGTTTTGC
5932711 AACTTATTCAATTTAGTCCCTAACTTCAAATTGAGCACTTTATGCATAGAATTTCTTCACGAATT
1 AACTTATTCAATTTAGTCCCTAACTTCAAATTGAGCACTTTATGCATAGAATTTCTTCACGAATT
5932776 TTCACACAATCATGCAATCATATT
66 TTCACACAATCATGCAATCATATT
*
5932800 AACTTATTCAATTTAGTCCCTCACTTCAAATTGAGCACTTTATGCATAGAATTTCTTCACGAATT
1 AACTTATTCAATTTAGTCCCTAACTTCAAATTGAGCACTTTATGCATAGAATTTCTTCACGAATT
5932865 TTCACACAATCATGCAATCATAT
66 TTCACACAATCATGCAATCATAT
5932888 CATAGACCTT
Statistics
Matches: 87, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
89 87 1.00
ACGTcount: A:0.33, C:0.22, G:0.08, T:0.37
Consensus pattern (89 bp):
AACTTATTCAATTTAGTCCCTAACTTCAAATTGAGCACTTTATGCATAGAATTTCTTCACGAATT
TTCACACAATCATGCAATCATATT
Found at i:5960586 original size:30 final size:30
Alignment explanation
Indices: 5960552--5960612 Score: 79
Period size: 30 Copynumber: 2.0 Consensus size: 30
5960542 TCCTTAACTC
5960552 AAACTTTGGACA-AATTACAATTTTGCCCCT
1 AAACTTTGG-CATAATTACAATTTTGCCCCT
* * *
5960582 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGCATAATTACAATTTTGCCCCT
5960612 A
1 A
5960613 GGCTTAGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
29 2 0.07
30 25 0.93
ACGTcount: A:0.30, C:0.25, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGCATAATTACAATTTTGCCCCT
Found at i:5964259 original size:8 final size:8
Alignment explanation
Indices: 5964246--5964284 Score: 51
Period size: 8 Copynumber: 4.9 Consensus size: 8
5964236 ATCTTAAAAA
5964246 GCCGAAAT
1 GCCGAAAT
*
5964254 GCCGAAAA
1 GCCGAAAT
*
5964262 GCTGAAAT
1 GCCGAAAT
*
5964270 GCTGAAAT
1 GCCGAAAT
5964278 GCCGAAA
1 GCCGAAA
5964285 AGCTAAAAGT
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
8 27 1.00
ACGTcount: A:0.41, C:0.21, G:0.26, T:0.13
Consensus pattern (8 bp):
GCCGAAAT
Found at i:5964263 original size:16 final size:16
Alignment explanation
Indices: 5964242--5964284 Score: 59
Period size: 16 Copynumber: 2.7 Consensus size: 16
5964232 GCAGATCTTA
5964242 AAAAGCCGAAATGCCG
1 AAAAGCCGAAATGCCG
* *
5964258 AAAAGCTGAAATGCTG
1 AAAAGCCGAAATGCCG
*
5964274 AAATGCCGAAA
1 AAAAGCCGAAA
5964285 AGCTAAAAGT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
16 23 1.00
ACGTcount: A:0.47, C:0.19, G:0.23, T:0.12
Consensus pattern (16 bp):
AAAAGCCGAAATGCCG
Found at i:5964581 original size:28 final size:28
Alignment explanation
Indices: 5964506--5964619 Score: 106
Period size: 28 Copynumber: 4.1 Consensus size: 28
5964496 AGTATAACTG
**
5964506 TAAATGTGATTGGGCCTAAT-GGCTGTA
1 TAAATGTGATTGGGCCTAATGGGCCATA
* ** * *
5964533 TGAATGTGATTTATGCTTAATGGGCCACA
1 TAAATGTGA-TTGGGCCTAATGGGCCATA
*
5964562 TAAATGTGATTGTGCCTAATGGGCCATA
1 TAAATGTGATTGGGCCTAATGGGCCATA
* *
5964590 TAAAAT-AGATTGGGCCTAATGGGCTATA
1 T-AAATGTGATTGGGCCTAATGGGCCATA
5964618 TA
1 TA
5964620 TAGGTATGTG
Statistics
Matches: 70, Mismatches: 14, Indels: 6
0.78 0.16 0.07
Matches are distributed among these distances:
27 9 0.13
28 45 0.64
29 16 0.23
ACGTcount: A:0.30, C:0.12, G:0.25, T:0.32
Consensus pattern (28 bp):
TAAATGTGATTGGGCCTAATGGGCCATA
Found at i:5976311 original size:27 final size:27
Alignment explanation
Indices: 5976274--5976340 Score: 109
Period size: 27 Copynumber: 2.5 Consensus size: 27
5976264 TTTGGGACTA
*
5976274 AGCCC-TTTCAGTATCAGTTAGGCCTT
1 AGCCCATTTCAGTATCAATTAGGCCTT
*
5976300 AGCCTATTTCAGTATCAATTAGGCCTT
1 AGCCCATTTCAGTATCAATTAGGCCTT
5976327 AGCCCATTTCAGTA
1 AGCCCATTTCAGTA
5976341 ACCCTAGCAG
Statistics
Matches: 37, Mismatches: 3, Indels: 1
0.90 0.07 0.02
Matches are distributed among these distances:
26 4 0.11
27 33 0.89
ACGTcount: A:0.24, C:0.25, G:0.16, T:0.34
Consensus pattern (27 bp):
AGCCCATTTCAGTATCAATTAGGCCTT
Found at i:6008481 original size:23 final size:23
Alignment explanation
Indices: 6008455--6008548 Score: 125
Period size: 23 Copynumber: 3.9 Consensus size: 23
6008445 GATGGATTAT
* *
6008455 ATTATTCTGGTGTGTTTGGGAGG
1 ATTATACTGGTGTGTTTTGGAGG
6008478 ATTATATGATACTGGTGTGTTTTGGAGG
1 A-T-TA---TACTGGTGTGTTTTGGAGG
6008506 ATTATACTGGTGTGTTTTGGAGG
1 ATTATACTGGTGTGTTTTGGAGG
6008529 ATTATACTGGTGTGTTTTGG
1 ATTATACTGGTGTGTTTTGG
6008549 TTGGACATAT
Statistics
Matches: 64, Mismatches: 2, Indels: 10
0.84 0.03 0.13
Matches are distributed among these distances:
23 40 0.62
24 1 0.02
25 2 0.03
26 2 0.03
27 1 0.02
28 18 0.28
ACGTcount: A:0.17, C:0.04, G:0.34, T:0.45
Consensus pattern (23 bp):
ATTATACTGGTGTGTTTTGGAGG
Found at i:6008481 original size:28 final size:28
Alignment explanation
Indices: 6008428--6008534 Score: 134
Period size: 28 Copynumber: 4.0 Consensus size: 28
6008418 CACTTTGTGC
*
6008428 TATTCTGGTATGTTTTGGATGGATTATAT
1 TATTCTGGTGTGTTTTGGA-GGATTATAT
*
6008457 TATTCTGGTGTGTTTGGGAGGATTATAT
1 TATTCTGGTGTGTTTTGGAGGATTATAT
* *
6008485 GATACTGGTGTGTTTTGGAGGA-T-TA-
1 TATTCTGGTGTGTTTTGGAGGATTATAT
6008510 TA--CTGGTGTGTTTTGGAGGATTATA
1 TATTCTGGTGTGTTTTGGAGGATTATA
6008535 CTGGTGTGTT
Statistics
Matches: 70, Mismatches: 6, Indels: 8
0.83 0.07 0.10
Matches are distributed among these distances:
23 18 0.26
24 1 0.01
25 3 0.04
26 2 0.03
27 1 0.01
28 28 0.40
29 17 0.24
ACGTcount: A:0.20, C:0.04, G:0.31, T:0.46
Consensus pattern (28 bp):
TATTCTGGTGTGTTTTGGAGGATTATAT
Found at i:6008568 original size:23 final size:23
Alignment explanation
Indices: 6008486--6008548 Score: 126
Period size: 23 Copynumber: 2.7 Consensus size: 23
6008476 GGATTATATG
6008486 ATACTGGTGTGTTTTGGAGGATT
1 ATACTGGTGTGTTTTGGAGGATT
6008509 ATACTGGTGTGTTTTGGAGGATT
1 ATACTGGTGTGTTTTGGAGGATT
6008532 ATACTGGTGTGTTTTGG
1 ATACTGGTGTGTTTTGG
6008549 TTGGACATAT
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 40 1.00
ACGTcount: A:0.16, C:0.05, G:0.35, T:0.44
Consensus pattern (23 bp):
ATACTGGTGTGTTTTGGAGGATT
Found at i:6008776 original size:22 final size:23
Alignment explanation
Indices: 6008739--6008783 Score: 74
Period size: 22 Copynumber: 2.0 Consensus size: 23
6008729 GCTTTACTGA
*
6008739 TCAGGCACTTTATGTGTCGTATT
1 TCAGGCACTTTATGTGTCATATT
6008762 TCAGGCAC-TTATGTGTCATATT
1 TCAGGCACTTTATGTGTCATATT
6008784 CTGATCAGGT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
22 13 0.62
23 8 0.38
ACGTcount: A:0.20, C:0.18, G:0.20, T:0.42
Consensus pattern (23 bp):
TCAGGCACTTTATGTGTCATATT
Found at i:6009988 original size:46 final size:46
Alignment explanation
Indices: 6009852--6009978 Score: 218
Period size: 46 Copynumber: 2.8 Consensus size: 46
6009842 TATATATACA
* * *
6009852 CATCTCATACATATCTCACATTAGCCATTCGGCTTTACCTCATATC
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCTCATATC
*
6009898 CATCTCATACACGTTTCGCATTAGCCATTCGGCTTTACCTCATATC
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCTCATATC
6009944 CATCTCATACACATTTCGCATTAGCCATTCGGCTT
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTT
6009979 CGCCACATAT
Statistics
Matches: 76, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
46 76 1.00
ACGTcount: A:0.24, C:0.32, G:0.09, T:0.35
Consensus pattern (46 bp):
CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCTCATATC
Found at i:6010031 original size:22 final size:22
Alignment explanation
Indices: 6010005--6010080 Score: 59
Period size: 22 Copynumber: 3.3 Consensus size: 22
6009995 TTCCACGTTC
6010005 ATCACATTGGCCATTCTACCTT
1 ATCACATTGGCCATTCTACCTT
* *
6010027 ATCACATATATG-CATGT-TCACATT
1 ATCACAT-T-GGCCAT-TCT-ACCTT
6010051 CATCACATTGGCCATTC-AGCCTT
1 -ATCACATTGGCCATTCTA-CCTT
6010074 ATCACAT
1 ATCACAT
6010081 ATATGCATGT
Statistics
Matches: 42, Mismatches: 4, Indels: 16
0.68 0.06 0.26
Matches are distributed among these distances:
22 15 0.36
23 10 0.24
24 10 0.24
25 7 0.17
ACGTcount: A:0.28, C:0.29, G:0.09, T:0.34
Consensus pattern (22 bp):
ATCACATTGGCCATTCTACCTT
Found at i:6010033 original size:47 final size:46
Alignment explanation
Indices: 6010002--6010148 Score: 249
Period size: 47 Copynumber: 3.1 Consensus size: 46
6009992 CACTTCCACG
6010002 TTCATCACATTGGCCATTCTACCTTATCACATATATGCATGTTCACA
1 TTCATCACATTGGCCATTC-ACCTTATCACATATATGCATGTTCACA
6010049 TTCATCACATTGGCCATTCAGCCTTATCACATATATGCATGTTCACA
1 TTCATCACATTGGCCATTCA-CCTTATCACATATATGCATGTTCACA
* *
6010096 TTCATCACATTGGCCATTCGGCCTTATCACATATATGTATGTTCACA
1 TTCATCACATTGGCCATTC-ACCTTATCACATATATGCATGTTCACA
6010143 TTCATC
1 TTCATC
6010149 TCATAAAATC
Statistics
Matches: 96, Mismatches: 2, Indels: 4
0.94 0.02 0.04
Matches are distributed among these distances:
46 1 0.01
47 95 0.99
ACGTcount: A:0.27, C:0.27, G:0.10, T:0.36
Consensus pattern (46 bp):
TTCATCACATTGGCCATTCACCTTATCACATATATGCATGTTCACA
Found at i:6010102 original size:25 final size:25
Alignment explanation
Indices: 6010027--6010105 Score: 87
Period size: 25 Copynumber: 3.3 Consensus size: 25
6010017 ATTCTACCTT
6010027 ATCACATATATGCATGTTCACATTC
1 ATCACATATATGCATGTTCACATTC
* *
6010052 ATCACAT-T-GGCCA--TTCAGCCTT-
1 ATCACATATATG-CATGTTCA-CATTC
6010074 ATCACATATATGCATGTTCACATTC
1 ATCACATATATGCATGTTCACATTC
6010099 ATCACAT
1 ATCACAT
6010106 TGGCCATTCG
Statistics
Matches: 43, Mismatches: 4, Indels: 14
0.70 0.07 0.23
Matches are distributed among these distances:
22 11 0.26
23 7 0.16
24 7 0.16
25 18 0.42
ACGTcount: A:0.30, C:0.27, G:0.09, T:0.34
Consensus pattern (25 bp):
ATCACATATATGCATGTTCACATTC
Found at i:6013962 original size:27 final size:27
Alignment explanation
Indices: 6013918--6014119 Score: 144
Period size: 27 Copynumber: 7.6 Consensus size: 27
6013908 TTAGTTTACC
*
6013918 AAATTACAGAAATACCCCCAG-TTATA
1 AAATTACCGAAATACCCCCAGTTTATA
*
6013944 AAATTACC-AAAGTACCCCCGGTTTATA
1 AAATTACCGAAA-TACCCCCAGTTTATA
** * *
6013971 AAATTACCGAAATACCGTC-GATTGTA
1 AAATTACCGAAATACCCCCAGTTTATA
* ** * *
6013997 AAATTACTGAAATACCATCAATTTGTA
1 AAATTACCGAAATACCCCCAGTTTATA
* **
6014024 AAATTACCGAAATACCCTCAGTTTGCA
1 AAATTACCGAAATACCCCCAGTTTATA
** * *
6014051 AAATTACTAAAATACCCTC-GATTTGTA
1 AAATTACCGAAATACCCCCAG-TTTATA
* * *
6014078 AAATTACTGAAATACCCTC-GATTTGTA
1 AAATTACCGAAATACCCCCAG-TTTATA
*
6014105 AAATTACTGAAATAC
1 AAATTACCGAAATAC
6014120 TTCTGTAAGA
Statistics
Matches: 153, Mismatches: 18, Indels: 9
0.85 0.10 0.05
Matches are distributed among these distances:
25 3 0.02
26 38 0.25
27 109 0.71
28 3 0.02
ACGTcount: A:0.41, C:0.20, G:0.10, T:0.29
Consensus pattern (27 bp):
AAATTACCGAAATACCCCCAGTTTATA
Found at i:6013976 original size:53 final size:51
Alignment explanation
Indices: 6013918--6014111 Score: 183
Period size: 53 Copynumber: 3.6 Consensus size: 51
6013908 TTAGTTTACC
* * * * *
6013918 AAATTACAGAAATACCCCCAGTTATAAAATTACCAAAGTACCCCCGGTTTATA
1 AAATTACCGAAATACCCTCAGTT-TAAAATTACCAAA-TACCCTCGATTTGTA
* * * *
6013971 AAATTACCGAAATACCGTC-GATTGTAAAATTACTGAAATACCATCAATTTGTA
1 AAATTACCGAAATACCCTCAG-TT-TAAAATTAC-CAAATACCCTCGATTTGTA
*
6014024 AAATTACCGAAATACCCTCAGTTTGCAAAATTACTAAAATACCCTCGATTTGTA
1 AAATTACCGAAATACCCTCAGTTT--AAAATTAC-CAAATACCCTCGATTTGTA
* *
6014078 AAATTACTGAAATACCCTCGATTTGTAAAATTAC
1 AAATTACCGAAATACCCTC-AGTT-TAAAATTAC
6014112 TGAAATACTT
Statistics
Matches: 118, Mismatches: 16, Indels: 13
0.80 0.11 0.09
Matches are distributed among these distances:
52 2 0.02
53 57 0.48
54 55 0.47
55 3 0.03
56 1 0.01
ACGTcount: A:0.41, C:0.21, G:0.10, T:0.29
Consensus pattern (51 bp):
AAATTACCGAAATACCCTCAGTTTAAAATTACCAAATACCCTCGATTTGTA
Found at i:6014075 original size:54 final size:53
Alignment explanation
Indices: 6013918--6014119 Score: 226
Period size: 54 Copynumber: 3.8 Consensus size: 53
6013908 TTAGTTTACC
* * * * * * * *
6013918 AAATTACAGAAATACCCCCAG-TTATAAAATTACCAAAGTACCCCCGGTTTATA
1 AAATTACCGAAATACCCTC-GTTTGTAAAATTACTAAAATACCCTCGATTTGTA
* * * * *
6013971 AAATTACCGAAATACCGTCGATTGTAAAATTACTGAAATACCATCAATTTGTA
1 AAATTACCGAAATACCCTCGTTTGTAAAATTACTAAAATACCCTCGATTTGTA
*
6014024 AAATTACCGAAATACCCTCAGTTTGCAAAATTACTAAAATACCCTCGATTTGTA
1 AAATTACCGAAATACCCTC-GTTTGTAAAATTACTAAAATACCCTCGATTTGTA
* *
6014078 AAATTACTGAAATACCCTCGATTTGTAAAATTACTGAAATAC
1 AAATTACCGAAATACCCTCG-TTTGTAAAATTACTAAAATAC
6014120 TTCTGTAAGA
Statistics
Matches: 125, Mismatches: 21, Indels: 5
0.83 0.14 0.03
Matches are distributed among these distances:
52 1 0.01
53 58 0.46
54 66 0.53
ACGTcount: A:0.41, C:0.20, G:0.10, T:0.29
Consensus pattern (53 bp):
AAATTACCGAAATACCCTCGTTTGTAAAATTACTAAAATACCCTCGATTTGTA
Found at i:6014155 original size:81 final size:81
Alignment explanation
Indices: 6013970--6014119 Score: 221
Period size: 81 Copynumber: 1.9 Consensus size: 81
6013960 CCCGGTTTAT
* *
6013970 AAAATTACCGAAATACCGTCGA-TTGTAAAATTACTGAAATACCATCAATTTGTAAAATTACCGA
1 AAAATTACCAAAATACCCTCGATTTGTAAAATTACTGAAATACCATCAATTTGTAAAATTACCGA
**
6014034 AATACCCTCAGTTTGC
66 AATACCCTCAGTAAGC
* * * *
6014050 AAAATTACTAAAATACCCTCGATTTGTAAAATTACTGAAATACCCTCGATTTGTAAAATTACTGA
1 AAAATTACCAAAATACCCTCGATTTGTAAAATTACTGAAATACCATCAATTTGTAAAATTACCGA
6014115 AATAC
66 AATAC
6014120 TTCTGTAAGA
Statistics
Matches: 63, Mismatches: 6, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
80 19 0.30
81 44 0.70
ACGTcount: A:0.41, C:0.19, G:0.10, T:0.30
Consensus pattern (81 bp):
AAAATTACCAAAATACCCTCGATTTGTAAAATTACTGAAATACCATCAATTTGTAAAATTACCGA
AATACCCTCAGTAAGC
Found at i:6014161 original size:27 final size:27
Alignment explanation
Indices: 6014131--6014326 Score: 293
Period size: 27 Copynumber: 7.3 Consensus size: 27
6014121 TCTGTAAGAT
6014131 AGAATTACCATTTTACCCTCGATTTAC
1 AGAATTACCATTTTACCCTCGATTTAC
* *
6014158 AGAATTATCATTTTACCCTCGATTTAT
1 AGAATTACCATTTTACCCTCGATTTAC
6014185 AGAATTACCATTTTACCCTCGATTTAC
1 AGAATTACCATTTTACCCTCGATTTAC
* * * *
6014212 AAAATTATCGTTTTACCCTCGATTTAT
1 AGAATTACCATTTTACCCTCGATTTAC
*
6014239 AGAATTACCATTTTACCCTTGATTTAC
1 AGAATTACCATTTTACCCTCGATTTAC
* * *
6014266 AGAATTATCGTCTTACCCTCGATTTAC
1 AGAATTACCATTTTACCCTCGATTTAC
6014293 AGAATTACCATTTTACCCTCGATTTAC
1 AGAATTACCATTTTACCCTCGATTTAC
*
6014320 AAAATTA
1 AGAATTA
6014327 ATGAAATACC
Statistics
Matches: 148, Mismatches: 21, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 148 1.00
ACGTcount: A:0.31, C:0.22, G:0.08, T:0.39
Consensus pattern (27 bp):
AGAATTACCATTTTACCCTCGATTTAC
Found at i:6014187 original size:54 final size:54
Alignment explanation
Indices: 6014129--6014326 Score: 342
Period size: 54 Copynumber: 3.7 Consensus size: 54
6014119 CTTCTGTAAG
* *
6014129 ATAGAATTACCATTTTACCCTCGATTTACAGAATTATCATTTTACCCTCGATTT
1 ATAGAATTACCATTTTACCCTCGATTTACAAAATTATCGTTTTACCCTCGATTT
6014183 ATAGAATTACCATTTTACCCTCGATTTACAAAATTATCGTTTTACCCTCGATTT
1 ATAGAATTACCATTTTACCCTCGATTTACAAAATTATCGTTTTACCCTCGATTT
* * *
6014237 ATAGAATTACCATTTTACCCTTGATTTACAGAATTATCGTCTTACCCTCGATTT
1 ATAGAATTACCATTTTACCCTCGATTTACAAAATTATCGTTTTACCCTCGATTT
*
6014291 ACAGAATTACCATTTTACCCTCGATTTACAAAATTA
1 ATAGAATTACCATTTTACCCTCGATTTACAAAATTA
6014327 ATGAAATACC
Statistics
Matches: 136, Mismatches: 8, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
54 136 1.00
ACGTcount: A:0.31, C:0.22, G:0.08, T:0.39
Consensus pattern (54 bp):
ATAGAATTACCATTTTACCCTCGATTTACAAAATTATCGTTTTACCCTCGATTT
Found at i:6014336 original size:27 final size:27
Alignment explanation
Indices: 6014144--6014418 Score: 102
Period size: 27 Copynumber: 10.2 Consensus size: 27
6014134 ATTACCATTT
* * ***
6014144 TACCCTCGATTTACAGAATTATCATTT
1 TACCCTCGATTTACAAAATTAACAAAA
* * * ***
6014171 TACCCTCGATTTATAGAATTACCATTT
1 TACCCTCGATTTACAAAATTAACAAAA
* ****
6014198 TACCCTCGATTTACAAAATTATCGTTT
1 TACCCTCGATTTACAAAATTAACAAAA
* * * ***
6014225 TACCCTCGATTTATAGAATTACCATTT
1 TACCCTCGATTTACAAAATTAACAAAA
* * * ****
6014252 TACCCTTGATTTACAGAATTATCGTCT
1 TACCCTCGATTTACAAAATTAACAAAA
* * ***
6014279 TACCCTCGATTTACAGAATTACCATTT
1 TACCCTCGATTTACAAAATTAACAAAA
**
6014306 TACCCTCGATTTACAAAATTAATGAAA
1 TACCCTCGATTTACAAAATTAACAAAA
* * * *
6014333 TACCTTTGGTTTACAAAATTACCAAAA
1 TACCCTCGATTTACAAAATTAACAAAA
** * *
6014360 TACCCTCGATCAATAAAATTACCAAAA
1 TACCCTCGATTTACAAAATTAACAAAA
* ** *
6014387 TACCC-CTGGTTTGTAAAATTACCAAAA
1 TACCCTC-GATTTACAAAATTAACAAAA
6014414 TACCC
1 TACCC
6014419 CTAATTTGTG
Statistics
Matches: 205, Mismatches: 42, Indels: 2
0.82 0.17 0.01
Matches are distributed among these distances:
26 1 0.00
27 204 1.00
ACGTcount: A:0.34, C:0.23, G:0.08, T:0.35
Consensus pattern (27 bp):
TACCCTCGATTTACAAAATTAACAAAA
Found at i:6014346 original size:81 final size:80
Alignment explanation
Indices: 6014131--6014356 Score: 258
Period size: 81 Copynumber: 2.8 Consensus size: 80
6014121 TCTGTAAGAT
* *
6014131 AGAATTACCATTTTACCCTCGATTTACAGAATT-ATCATTTTACCCTCGATTTATAGAATTACCA
1 AGAATTACCATTTTACCCTCGATTTACAGAATTAAT-A-TTTACCCTTGATTTACAGAATTACCA
*
6014195 TTTTACCCTCGATTTAC
64 TCTTACCCTCGATTTAC
* * * * * *
6014212 AAAATTATCGTTTTACCCTCGATTTATAGAATTACCAT-TTTACCCTTGATTTACAGAATTATCG
1 AGAATTACCATTTTACCCTCGATTTACAGAATTA--ATATTTACCCTTGATTTACAGAATTACCA
6014276 TCTTACCCTCGATTTAC
64 TCTTACCCTCGATTTAC
* ** * * *
6014293 AGAATTACCATTTTACCCTCGATTTACAAAATTAATGAAATACCTTTGGTTTACAAAATTACCA
1 AGAATTACCATTTTACCCTCGATTTACAGAATTAAT-ATTTACCCTTGATTTACAGAATTACCA
6014357 AAATACCCTC
Statistics
Matches: 119, Mismatches: 21, Indels: 10
0.79 0.14 0.07
Matches are distributed among these distances:
79 2 0.02
81 115 0.97
84 2 0.02
ACGTcount: A:0.32, C:0.22, G:0.08, T:0.38
Consensus pattern (80 bp):
AGAATTACCATTTTACCCTCGATTTACAGAATTAATATTTACCCTTGATTTACAGAATTACCATC
TTACCCTCGATTTAC
Found at i:6014364 original size:54 final size:54
Alignment explanation
Indices: 6014288--6014418 Score: 136
Period size: 54 Copynumber: 2.4 Consensus size: 54
6014278 TTACCCTCGA
* *** ** ** **
6014288 TTTACAGAATTACCATTTTACCCTCGATTTACAAAATTAATGAAATACCTTTGG
1 TTTACAAAATTACCAAAATACCCTCGATCAACAAAATTAACAAAATACCCCTGG
* *
6014342 TTTACAAAATTACCAAAATACCCTCGATCAATAAAATTACCAAAATACCCCTGG
1 TTTACAAAATTACCAAAATACCCTCGATCAACAAAATTAACAAAATACCCCTGG
**
6014396 TTTGTAAAATTACCAAAATACCC
1 TTTACAAAATTACCAAAATACCC
6014419 CTAATTTGTG
Statistics
Matches: 63, Mismatches: 14, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
54 63 1.00
ACGTcount: A:0.40, C:0.22, G:0.07, T:0.31
Consensus pattern (54 bp):
TTTACAAAATTACCAAAATACCCTCGATCAACAAAATTAACAAAATACCCCTGG
Found at i:6014419 original size:27 final size:27
Alignment explanation
Indices: 6014347--6014445 Score: 110
Period size: 27 Copynumber: 3.7 Consensus size: 27
6014337 TTTGGTTTAC
***
6014347 AAAATTACCAAAATA-CCCTCGATCAAT
1 AAAATTACCAAAATACCCCT-GATTTGT
*
6014374 AAAATTACCAAAATACCCCTGGTTTGT
1 AAAATTACCAAAATACCCCTGATTTGT
*
6014401 AAAATTACCAAAATACCCCTAATTTGT
1 AAAATTACCAAAATACCCCTGATTTGT
* * *
6014428 GAAATTATCGAAATACCC
1 AAAATTACCAAAATACCC
6014446 TTGTAGGGTA
Statistics
Matches: 62, Mismatches: 9, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
27 58 0.94
28 4 0.06
ACGTcount: A:0.43, C:0.23, G:0.07, T:0.26
Consensus pattern (27 bp):
AAAATTACCAAAATACCCCTGATTTGT
Found at i:6014460 original size:27 final size:27
Alignment explanation
Indices: 6014430--6014679 Score: 347
Period size: 27 Copynumber: 9.3 Consensus size: 27
6014420 TAATTTGTGA
* *
6014430 AATTATCGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* **
6014457 AATTACTGAAATACCTTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
6014484 AATTACCGGAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
6014511 AATTACCGAAATACCCCTATAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
6014538 AATTACCGAAATACCCCTATAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
6014565 AATTATCGGAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
6014592 AATTACCGGAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
6014619 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * * * *
6014646 AATTACCTAGATACCCTTGTGGGGTAA
1 AATTACCGAAATACCCCTGTAGGGTAG
6014673 AATTACC
1 AATTACC
6014680 ATTTTACCCC
Statistics
Matches: 204, Mismatches: 19, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 204 1.00
ACGTcount: A:0.33, C:0.19, G:0.22, T:0.26
Consensus pattern (27 bp):
AATTACCGAAATACCCCTGTAGGGTAG
Found at i:6015060 original size:22 final size:22
Alignment explanation
Indices: 6015027--6015085 Score: 66
Period size: 22 Copynumber: 2.7 Consensus size: 22
6015017 CACGTTATCG
6015027 ATGG-TTCTGTGCCAACCTAAAT
1 ATGGCTTC-GTGCCAACCTAAAT
* * * *
6015049 ATGGCTTCGTGCCATCTTGACT
1 ATGGCTTCGTGCCAACCTAAAT
6015071 ATGGCTTCGTGCCAA
1 ATGGCTTCGTGCCAA
6015086 ATGTATTTAC
Statistics
Matches: 31, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
22 28 0.90
23 3 0.10
ACGTcount: A:0.20, C:0.25, G:0.22, T:0.32
Consensus pattern (22 bp):
ATGGCTTCGTGCCAACCTAAAT
Found at i:6015247 original size:27 final size:26
Alignment explanation
Indices: 6015210--6015262 Score: 79
Period size: 27 Copynumber: 2.0 Consensus size: 26
6015200 GTTATTACAG
*
6015210 TTATCGATTCTAGTGGCTTTGCCACA
1 TTATCGATTCTAGTGGCTATGCCACA
*
6015236 TTATCTGATTCTGGTGGCTATGCCACA
1 TTATC-GATTCTAGTGGCTATGCCACA
6015263 AATATCTGTA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
26 5 0.21
27 19 0.79
ACGTcount: A:0.19, C:0.23, G:0.21, T:0.38
Consensus pattern (26 bp):
TTATCGATTCTAGTGGCTATGCCACA
Found at i:6022023 original size:6 final size:6
Alignment explanation
Indices: 6022014--6022156 Score: 105
Period size: 6 Copynumber: 23.3 Consensus size: 6
6022004 TTGCATTCAC
* *
6022014 ATTCTG ATTCTA ATTCTG -TTACCTG ATTCTG ATTCTG GTTCTG ATTCTG
1 ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG
* * * * *
6022063 ATTCTG -TTACCTG ATACTG ATTCTG ATTTTG ATTTTG ATTCTG -TCACCTA
1 ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG AT--TCTG
* * *
6022113 ATTTTG ATTCTG ATTCTG ATTCTC ATTTTG ATTCT- AGTTCTG AT
1 ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG A-TTCTG AT
6022157 AATTTTTCTT
Statistics
Matches: 108, Mismatches: 18, Indels: 22
0.73 0.12 0.15
Matches are distributed among these distances:
5 6 0.06
6 89 0.82
7 9 0.08
8 4 0.04
ACGTcount: A:0.18, C:0.17, G:0.15, T:0.50
Consensus pattern (6 bp):
ATTCTG
Found at i:6022041 original size:19 final size:19
Alignment explanation
Indices: 6022017--6022124 Score: 107
Period size: 19 Copynumber: 5.8 Consensus size: 19
6022007 CATTCACATT
*
6022017 CTGATTCTAATTCTGTTAC
1 CTGATTCTGATTCTGTTAC
6022036 CTGATTCTGATTCTGGTT--
1 CTGATTCTGATTCT-GTTAC
6022054 CTGATTCTGATTCTGTTAC
1 CTGATTCTGATTCTGTTAC
*
6022073 CTGATACTGATTCTGATT--
1 CTGATTCTGATTCTG-TTAC
* * *
6022091 TTGATTTTGATTCTGTCAC
1 CTGATTCTGATTCTGTTAC
* *
6022110 CTAATTTTGATTCTG
1 CTGATTCTGATTCTG
6022125 ATTCTGATTC
Statistics
Matches: 75, Mismatches: 8, Indels: 12
0.79 0.08 0.13
Matches are distributed among these distances:
17 4 0.05
18 26 0.35
19 40 0.53
20 5 0.07
ACGTcount: A:0.18, C:0.18, G:0.16, T:0.49
Consensus pattern (19 bp):
CTGATTCTGATTCTGTTAC
Found at i:6022067 original size:37 final size:37
Alignment explanation
Indices: 6022014--6022135 Score: 172
Period size: 37 Copynumber: 3.3 Consensus size: 37
6022004 TTGCATTCAC
*
6022014 ATTCTGATTCTAATTCTGTTACCTGATTCTGATTCTG
1 ATTCTGATTCTGATTCTGTTACCTGATTCTGATTCTG
* *
6022051 GTTCTGATTCTGATTCTGTTACCTGATACTGATTCTG
1 ATTCTGATTCTGATTCTGTTACCTGATTCTGATTCTG
* * * * *
6022088 ATTTTGATTTTGATTCTGTCACCTAATTTTGATTCTG
1 ATTCTGATTCTGATTCTGTTACCTGATTCTGATTCTG
6022125 ATTCTGATTCT
1 ATTCTGATTCT
6022136 CATTTTGATT
Statistics
Matches: 73, Mismatches: 12, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
37 73 1.00
ACGTcount: A:0.18, C:0.17, G:0.15, T:0.50
Consensus pattern (37 bp):
ATTCTGATTCTGATTCTGTTACCTGATTCTGATTCTG
Found at i:6025055 original size:27 final size:28
Alignment explanation
Indices: 6024974--6025067 Score: 127
Period size: 27 Copynumber: 3.4 Consensus size: 28
6024964 GAGATTGGCG
* * * *
6024974 CTAAGTGTGCGGGTTTAAATTGTACAGCA
1 CTAAGTGTGCGAGTTT-GATTATATAGCA
6025003 CTAAGTGTGCGAGTTTGATTATATAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
6025031 CTAAGTGTGCGAG-TTGATTATATAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
*
6025058 CTGAGTGTGC
1 CTAAGTGTGC
6025068 AGACTTAATA
Statistics
Matches: 60, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
27 23 0.38
28 22 0.37
29 15 0.25
ACGTcount: A:0.27, C:0.13, G:0.28, T:0.33
Consensus pattern (28 bp):
CTAAGTGTGCGAGTTTGATTATATAGCA
Found at i:6025082 original size:29 final size:27
Alignment explanation
Indices: 6024999--6025082 Score: 96
Period size: 27 Copynumber: 3.0 Consensus size: 27
6024989 TAAATTGTAC
* *
6024999 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGA-CTTAATTATAT
* *
6025027 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGACTTAATTATAT
*
6025054 AGCACTGAGTGTGCAGACTTAATATATAT
1 AGCACTAAGTGTGC-GACTTAAT-TATAT
6025083 TTTTGAATCA
Statistics
Matches: 50, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
27 23 0.46
28 22 0.44
29 5 0.10
ACGTcount: A:0.31, C:0.12, G:0.24, T:0.33
Consensus pattern (27 bp):
AGCACTAAGTGTGCGACTTAATTATAT
Found at i:6025749 original size:29 final size:30
Alignment explanation
Indices: 6025716--6025774 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
6025706 CCATGCAAAA
* *
6025716 ATGGCATAAATG-TCGGTTGGGTTTGGTTT
1 ATGGCATAAATGTTCGGTTGGATTCGGTTT
6025745 ATGGCATAAATGTTCGGTTGGATTCGGTTT
1 ATGGCATAAATGTTCGGTTGGATTCGGTTT
6025775 TATAACGTTA
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
29 12 0.44
30 15 0.56
ACGTcount: A:0.19, C:0.08, G:0.32, T:0.41
Consensus pattern (30 bp):
ATGGCATAAATGTTCGGTTGGATTCGGTTT
Found at i:6027656 original size:16 final size:16
Alignment explanation
Indices: 6027635--6027665 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
6027625 CATTAGTTAC
6027635 AAATCACAAATTCATA
1 AAATCACAAATTCATA
6027651 AAATCACAAATTCAT
1 AAATCACAAATTCAT
6027666 GCAATTTAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.55, C:0.19, G:0.00, T:0.26
Consensus pattern (16 bp):
AAATCACAAATTCATA
Found at i:6027820 original size:21 final size:20
Alignment explanation
Indices: 6027792--6027830 Score: 69
Period size: 21 Copynumber: 1.9 Consensus size: 20
6027782 CAAAACTTGT
6027792 ATAACTATCATCAAACATTC
1 ATAACTATCATCAAACATTC
6027812 ATAATCTATCATCAAACAT
1 ATAA-CTATCATCAAACAT
6027831 CAAAATACTC
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 4 0.22
21 14 0.78
ACGTcount: A:0.46, C:0.23, G:0.00, T:0.31
Consensus pattern (20 bp):
ATAACTATCATCAAACATTC
Found at i:6031705 original size:20 final size:21
Alignment explanation
Indices: 6031668--6031710 Score: 54
Period size: 20 Copynumber: 2.1 Consensus size: 21
6031658 CAGAACAGGG
*
6031668 TTACAAAGCATTACCAAA-AT
1 TTACAAAACATTACCAAACAT
6031688 TTACAAAACAATTA-CAAACAT
1 TTACAAAAC-ATTACCAAACAT
6031709 TT
1 TT
6031711 CATGTCATCT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
20 12 0.60
21 8 0.40
ACGTcount: A:0.51, C:0.19, G:0.02, T:0.28
Consensus pattern (21 bp):
TTACAAAACATTACCAAACAT
Found at i:6034922 original size:30 final size:30
Alignment explanation
Indices: 6034888--6034947 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
6034878 ATTTAATACG
6034888 AACTTTGGAAAAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
* * *
6034918 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
6034948 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.30, C:0.25, G:0.08, T:0.37
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Found at i:6042461 original size:30 final size:30
Alignment explanation
Indices: 6042427--6042486 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
6042417 ATTTAATACG
6042427 AACTTTGGAAAAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
* * *
6042457 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
6042487 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.30, C:0.25, G:0.08, T:0.37
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Found at i:6043293 original size:42 final size:42
Alignment explanation
Indices: 6043234--6043313 Score: 142
Period size: 42 Copynumber: 1.9 Consensus size: 42
6043224 TAAAATAATT
*
6043234 ATTTCTATCTCGGATTTGTGGTCACGAAACCACTATTCTGAC
1 ATTTCTATCTCAGATTTGTGGTCACGAAACCACTATTCTGAC
*
6043276 ATTTCTATTTCAGATTTGTGGTCACGAAACCACTATTC
1 ATTTCTATCTCAGATTTGTGGTCACGAAACCACTATTC
6043314 CGATTAAGCC
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
42 36 1.00
ACGTcount: A:0.25, C:0.23, G:0.15, T:0.38
Consensus pattern (42 bp):
ATTTCTATCTCAGATTTGTGGTCACGAAACCACTATTCTGAC
Found at i:6043585 original size:24 final size:24
Alignment explanation
Indices: 6043538--6043587 Score: 64
Period size: 24 Copynumber: 2.1 Consensus size: 24
6043528 AGCCGTAATT
* * *
6043538 GGGAAGTTCACAAAAAAGCTTATC
1 GGGAAGTGCACAAAAAACCATATC
*
6043562 GGGAAGTGCACAAAGAACCATATC
1 GGGAAGTGCACAAAAAACCATATC
6043586 GG
1 GG
6043588 AAAGCTATGG
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.40, C:0.18, G:0.26, T:0.16
Consensus pattern (24 bp):
GGGAAGTGCACAAAAAACCATATC
Found at i:6048211 original size:46 final size:46
Alignment explanation
Indices: 6048144--6049054 Score: 1786
Period size: 46 Copynumber: 19.8 Consensus size: 46
6048134 TGTAACCCGC
* * **
6048144 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGTATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
6048190 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
6048236 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
6048282 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
6048328 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
6048374 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
6048420 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
6048466 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
6048512 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
6048558 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
6048604 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
6048650 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
6048696 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
6048742 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
6048788 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
6048834 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
6048880 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
6048926 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
6048972 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
6049018 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
6049055 TGCTCAACCA
Statistics
Matches: 861, Mismatches: 4, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
46 861 1.00
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:6049854 original size:30 final size:30
Alignment explanation
Indices: 6049820--6049879 Score: 84
Period size: 30 Copynumber: 2.0 Consensus size: 30
6049810 ATTTAATACG
6049820 AACTTTAAAAAAATTACACTTTTGCCCCTA
1 AACTTTAAAAAAATTACACTTTTGCCCCTA
*** *
6049850 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTAAAAAAATTACACTTTTGCCCCTA
6049880 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.33, C:0.25, G:0.05, T:0.37
Consensus pattern (30 bp):
AACTTTAAAAAAATTACACTTTTGCCCCTA
Found at i:6049992 original size:48 final size:48
Alignment explanation
Indices: 6049935--6050067 Score: 266
Period size: 48 Copynumber: 2.8 Consensus size: 48
6049925 TGCTGATCAC
6049935 TTTTCCCTTCTATGGCAACATCAAATTCTTACTCTAACATATACTTGA
1 TTTTCCCTTCTATGGCAACATCAAATTCTTACTCTAACATATACTTGA
6049983 TTTTCCCTTCTATGGCAACATCAAATTCTTACTCTAACATATACTTGA
1 TTTTCCCTTCTATGGCAACATCAAATTCTTACTCTAACATATACTTGA
6050031 TTTTCCCTTCTATGGCAACATCAAATTCTTACTCTAA
1 TTTTCCCTTCTATGGCAACATCAAATTCTTACTCTAA
6050068 TTTTACTCAT
Statistics
Matches: 85, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
48 85 1.00
ACGTcount: A:0.29, C:0.26, G:0.06, T:0.40
Consensus pattern (48 bp):
TTTTCCCTTCTATGGCAACATCAAATTCTTACTCTAACATATACTTGA
Found at i:6050212 original size:45 final size:45
Alignment explanation
Indices: 6050161--6050252 Score: 157
Period size: 45 Copynumber: 2.0 Consensus size: 45
6050151 ATACACAAAT
*
6050161 TTCACCTATGGGTATTTTTCCAAATATAAACCCTAGGTTGAATTA
1 TTCACCTATGGGTATTTTTCCAAATATAAACCCTAAGTTGAATTA
* *
6050206 TTCACCTATGGGTATTTTTCCCAATATGAACCCTAAGTTGAATTA
1 TTCACCTATGGGTATTTTTCCAAATATAAACCCTAAGTTGAATTA
6050251 TT
1 TT
6050253 GTTAGCATAA
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
45 44 1.00
ACGTcount: A:0.29, C:0.18, G:0.13, T:0.39
Consensus pattern (45 bp):
TTCACCTATGGGTATTTTTCCAAATATAAACCCTAAGTTGAATTA
Found at i:6050433 original size:101 final size:100
Alignment explanation
Indices: 6050259--6050457 Score: 294
Period size: 101 Copynumber: 2.0 Consensus size: 100
6050249 TATTGTTAGC
** * *
6050259 ATAAGCTTAATCGAGCTACCGGGATCTCAAAATGTAAAAATCATTAAAAACGGGGTTTGGAATCA
1 ATAAGCTTAATCGAGCTACCAAGATCTCAAAACGTAAAAATCATTAAAAACGGGGCTTGGAATCA
*
6050324 CTTACTATGGAGCTTGGAAGCTTGAAACAAACCCT
66 CTTACTATGGAGCTTGGAAGCTTGAAAAAAACCCT
*
6050359 ATAAGCTTAATCGAGCTTCCAAGAT-TCCAAAAACGTAAAGAA-CATTAAAAACGGGGCTTGGAA
1 ATAAGCTTAATCGAGCTACCAAGATCT-C-AAAACGTAAA-AATCATTAAAAACGGGGCTTGGAA
*
6050422 TCACTTACTATGGAGCTTGGTAGCTTGAAAAAAACC
63 TCACTTACTATGGAGCTTGGAAGCTTGAAAAAAACC
6050458 ATATCTATGG
Statistics
Matches: 89, Mismatches: 7, Indels: 5
0.88 0.07 0.05
Matches are distributed among these distances:
99 1 0.01
100 23 0.26
101 63 0.71
102 2 0.02
ACGTcount: A:0.38, C:0.18, G:0.20, T:0.24
Consensus pattern (100 bp):
ATAAGCTTAATCGAGCTACCAAGATCTCAAAACGTAAAAATCATTAAAAACGGGGCTTGGAATCA
CTTACTATGGAGCTTGGAAGCTTGAAAAAAACCCT
Found at i:6056541 original size:45 final size:45
Alignment explanation
Indices: 6056438--6056702 Score: 394
Period size: 45 Copynumber: 6.0 Consensus size: 45
6056428 CCGAATTCAT
* * * * *
6056438 TCACCAGCATT-TTGCCTGCTAGGCTCGAA-GCTCG-ATA-TCATT
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGT-ATC
* *
6056480 TCACCGGCATTATAGCCTGCTAGGCTCGAAGGCCAGAATAGTATC
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATC
6056525 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATC
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATC
* *
6056570 TCACCGGTATTATAGCATGCTAGGCTCAAAGGCCCGAATAGTATC
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATC
*
6056615 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATA
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATC
*
6056660 TCACCGGCATTATAGCCTGCTAGGCTCAAAAGCCCGAATAGTA
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTA
6056703 CTATACGATA
Statistics
Matches: 206, Mismatches: 13, Indels: 5
0.92 0.06 0.02
Matches are distributed among these distances:
42 10 0.05
43 17 0.08
44 3 0.01
45 175 0.85
46 1 0.00
ACGTcount: A:0.27, C:0.27, G:0.22, T:0.24
Consensus pattern (45 bp):
TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATC
Found at i:6058710 original size:31 final size:30
Alignment explanation
Indices: 6058675--6058735 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
6058665 ATTTAATACG
6058675 AACTTTAAAAAAAATTACACTTTTGCCCCTA
1 AACTTT-AAAAAAATTACACTTTTGCCCCTA
*** *
6058706 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTAAAAAAATTACACTTTTGCCCCTA
6058736 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
30 20 0.77
31 6 0.23
ACGTcount: A:0.34, C:0.25, G:0.05, T:0.36
Consensus pattern (30 bp):
AACTTTAAAAAAATTACACTTTTGCCCCTA
Found at i:6062022 original size:42 final size:42
Alignment explanation
Indices: 6061963--6062044 Score: 164
Period size: 42 Copynumber: 2.0 Consensus size: 42
6061953 AATCTCGAGT
6061963 TCCCTACACTGGCTGCAGAAGTATTCTGAGATTTAGGACCCA
1 TCCCTACACTGGCTGCAGAAGTATTCTGAGATTTAGGACCCA
6062005 TCCCTACACTGGCTGCAGAAGTATTCTGAGATTTAGGACC
1 TCCCTACACTGGCTGCAGAAGTATTCTGAGATTTAGGACC
6062045 TACATTCTGC
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
42 40 1.00
ACGTcount: A:0.26, C:0.26, G:0.22, T:0.27
Consensus pattern (42 bp):
TCCCTACACTGGCTGCAGAAGTATTCTGAGATTTAGGACCCA
Found at i:6064198 original size:19 final size:20
Alignment explanation
Indices: 6064174--6064211 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
6064164 GGTACCACCA
6064174 AAACAT-ATATCA-CATCTTT
1 AAACATCAT-TCATCATCTTT
6064193 AAACATCATTCATCATCTT
1 AAACATCATTCATCATCTT
6064212 ACCACCTTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.39, C:0.24, G:0.00, T:0.37
Consensus pattern (20 bp):
AAACATCATTCATCATCTTT
Found at i:6064547 original size:93 final size:93
Alignment explanation
Indices: 6064440--6064610 Score: 281
Period size: 93 Copynumber: 1.8 Consensus size: 93
6064430 CCCCCTAAGT
* *
6064440 GAACTCGGACTCAACTCAACGAGCTCGGGCGA-TCGCATCCATAAATGAACTCGGACTCAACTCA
1 GAACTCAGACTCAACTCAACGAGCTCGGAC-ATTCGCATCCATAAATGAACTCGGACTCAACTCA
6064504 ACGAGTTCGGATGCCTAGTTACATCTCAC
65 ACGAGTTCGGATGCCTAGTTACATCTCAC
* * *
6064533 GAACTCAGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
6064598 CGAGTTCGGATGC
66 CGAGTTCGGATGC
6064611 TCAACCATCC
Statistics
Matches: 72, Mismatches: 5, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
92 1 0.01
93 71 0.99
ACGTcount: A:0.30, C:0.29, G:0.20, T:0.21
Consensus pattern (93 bp):
GAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:6064607 original size:46 final size:46
Alignment explanation
Indices: 6064435--6064607 Score: 192
Period size: 46 Copynumber: 3.7 Consensus size: 46
6064425 TAACCCCCCC
* * *
6064435 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGATCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGATTGCATCCA
* * *
6064481 TAAATGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---CGA-TTGCATCCA
* * *
6064529 TCA-CGAACTCAGACTCAACTCAACGAGTTCGGAC-ATTTGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGA-TTGCATCCA
6064574 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
6064608 TGCTCAACCA
Statistics
Matches: 106, Mismatches: 14, Indels: 14
0.79 0.10 0.10
Matches are distributed among these distances:
43 6 0.06
44 2 0.02
45 2 0.02
46 59 0.56
47 28 0.26
48 2 0.02
49 3 0.03
50 4 0.04
ACGTcount: A:0.31, C:0.28, G:0.20, T:0.21
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGATTGCATCCA
Found at i:6065069 original size:30 final size:30
Alignment explanation
Indices: 6065035--6065094 Score: 84
Period size: 30 Copynumber: 2.0 Consensus size: 30
6065025 ATTTAATACG
6065035 AACTTTAAAAAAATTACACTTTTGCCCCTA
1 AACTTTAAAAAAATTACACTTTTGCCCCTA
*** *
6065065 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTAAAAAAATTACACTTTTGCCCCTA
6065095 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.33, C:0.25, G:0.05, T:0.37
Consensus pattern (30 bp):
AACTTTAAAAAAATTACACTTTTGCCCCTA
Found at i:6067183 original size:46 final size:46
Alignment explanation
Indices: 6067133--6067258 Score: 200
Period size: 46 Copynumber: 2.7 Consensus size: 46
6067123 TGGTTGAGCA
* *
6067133 TCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
6067179 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
* *
6067225 -CCTGAGCTCGTTGAGTTGAGTTCGAGTTCACTTA
1 TCC-GAACTCGTTGAGTTGAGTCCGAGTTCACTTA
6067259 GGGGCGGGTT
Statistics
Matches: 75, Mismatches: 4, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
45 2 0.03
46 73 0.97
ACGTcount: A:0.21, C:0.21, G:0.27, T:0.31
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
Found at i:6069690 original size:35 final size:34
Alignment explanation
Indices: 6069650--6069719 Score: 122
Period size: 35 Copynumber: 2.0 Consensus size: 34
6069640 TGTAGGTCCT
6069650 AAATCTCAGAATACTTCTGCAGCCAGTGTAGGGA
1 AAATCTCAGAATACTTCTGCAGCCAGTGTAGGGA
*
6069684 NAAATCTCAGAATACTTTTGCAGCCAGTGTAGGGA
1 -AAATCTCAGAATACTTCTGCAGCCAGTGTAGGGA
6069719 A
1 A
6069720 CTAGAGATTT
Statistics
Matches: 34, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
34 1 0.03
35 33 0.97
ACGTcount: A:0.33, C:0.19, G:0.23, T:0.24
Consensus pattern (34 bp):
AAATCTCAGAATACTTCTGCAGCCAGTGTAGGGA
Found at i:6074861 original size:93 final size:93
Alignment explanation
Indices: 6074702--6075430 Score: 1397
Period size: 93 Copynumber: 7.8 Consensus size: 93
6074692 GGATGGTTGA
6074702 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCGGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCGGAACTCGTTGAGT
6074767 TGAGTTCGAGTTCGTGAAATGTAACTAG
66 TGAGTTCGAGTTCGTGAAATGTAACTAG
6074795 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCGGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCGGAACTCGTTGAGT
6074860 TGAGTTCGAGTTCGTGAAATGTAACTAG
66 TGAGTTCGAGTTCGTGAAATGTAACTAG
6074888 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCGGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCGGAACTCGTTGAGT
6074953 TGAGTTCGAGTTCGTGAAATGTAACTAG
66 TGAGTTCGAGTTCGTGAAATGTAACTAG
6074981 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCGGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCGGAACTCGTTGAGT
6075046 TGAGTTCGAGTTCGTGAAATGTAACTAG
66 TGAGTTCGAGTTCGTGAAATGTAACTAG
6075074 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCGGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCGGAACTCGTTGAGT
6075139 TGAGTTCGAGTTCGTGAAATGTAACTAG
66 TGAGTTCGAGTTCGTGAAATGTAACTAG
6075167 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCGGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCGGAACTCGTTGAGT
6075232 TGAGTTCGAGTTCGTGAAATGTAACTAG
66 TGAGTTCGAGTTCGTGAAATGTAACTAG
6075260 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCGGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCGGAACTCGTTGAGT
6075325 TGAGTTCGAGTTCGTGAAATGTAACTAG
66 TGAGTTCGAGTTCGTGAAATGTAACTAG
* * * * *
6075353 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCGGAACTCGTTGAGT
6075418 TGAG-TCTGAGTTC
66 TGAGTTC-GAGTTC
6075431 ACTTAGGGGC
Statistics
Matches: 630, Mismatches: 5, Indels: 2
0.99 0.01 0.00
Matches are distributed among these distances:
92 2 0.00
93 628 1.00
ACGTcount: A:0.23, C:0.18, G:0.29, T:0.30
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCGGAACTCGTTGAGT
TGAGTTCGAGTTCGTGAAATGTAACTAG
Found at i:6077528 original size:25 final size:25
Alignment explanation
Indices: 6077514--6077643 Score: 199
Period size: 25 Copynumber: 5.2 Consensus size: 25
6077504 ATAATAAGGG
*
6077514 CAAATTTAACTGGAATTATTAAGAA
1 CAAATTTAACCGGAATTATTAAGAA
6077539 CAAATTTAACCGGAATTATTAAG-A
1 CAAATTTAACCGGAATTATTAAGAA
* *
6077563 CAAATGTAACCAGAATTATTAAGAA
1 CAAATTTAACCGGAATTATTAAGAA
* *
6077588 CAAATTTAACTGGAATTATTAAGAG
1 CAAATTTAACCGGAATTATTAAGAA
*
6077613 CAAATTTAATCGGAATTATTAAGAA
1 CAAATTTAACCGGAATTATTAAGAA
6077638 CAAATT
1 CAAATT
6077644 AACAAGCTTA
Statistics
Matches: 94, Mismatches: 10, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
24 22 0.23
25 72 0.77
ACGTcount: A:0.48, C:0.10, G:0.12, T:0.30
Consensus pattern (25 bp):
CAAATTTAACCGGAATTATTAAGAA
Found at i:6077646 original size:49 final size:49
Alignment explanation
Indices: 6077499--6077643 Score: 202
Period size: 49 Copynumber: 2.9 Consensus size: 49
6077489 GTAACTTATT
* * *
6077499 CGGAAATAATAAGGGCAAATTTAACTGGAATTATTAAGAACAAATTTAAC
1 CGGAATTATTAAGAGCAAATTTAAC-GGAATTATTAAGAACAAATTTAAC
* *
6077549 CGGAATTATTAAGA-CAAATGTAACCAGAATTATTAAGAACAAATTTAAC
1 CGGAATTATTAAGAGCAAATTTAA-CGGAATTATTAAGAACAAATTTAAC
*
6077598 TGGAATTATTAAGAGCAAATTTAATCGGAATTATTAAGAACAAATT
1 CGGAATTATTAAGAGCAAATTTAA-CGGAATTATTAAGAACAAATT
6077644 AACAAGCTTA
Statistics
Matches: 84, Mismatches: 9, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
49 44 0.52
50 40 0.48
ACGTcount: A:0.48, C:0.10, G:0.14, T:0.28
Consensus pattern (49 bp):
CGGAATTATTAAGAGCAAATTTAACGGAATTATTAAGAACAAATTTAAC
Found at i:6084865 original size:27 final size:27
Alignment explanation
Indices: 6084846--6085018 Score: 231
Period size: 27 Copynumber: 6.4 Consensus size: 27
6084836 ATTACCAAAG
* * *
6084846 TACCCTCGATTTACAGAATTATCGTTT
1 TACCCTCGATTTACAAAATTACCATTT
***
6084873 TACCCTCGATTTACAAAATTACTGCTT
1 TACCCTCGATTTACAAAATTACCATTT
* *
6084900 TACCCTCGATTTATAGAATTACCATTT
1 TACCCTCGATTTACAAAATTACCATTT
* *
6084927 TACCCTCGATTTACAGAATTACCGTTT
1 TACCCTCGATTTACAAAATTACCATTT
*
6084954 TACCCTTGATTTACAAAATTACCATTT
1 TACCCTCGATTTACAAAATTACCATTT
6084981 TACCCTC-AGTTTACAAAATTACCATTT
1 TACCCTCGA-TTTACAAAATTACCATTT
6085008 TACCCTCGATT
1 TACCCTCGATT
6085019 GTTAAATTAC
Statistics
Matches: 129, Mismatches: 15, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
26 1 0.01
27 127 0.98
28 1 0.01
ACGTcount: A:0.29, C:0.25, G:0.08, T:0.39
Consensus pattern (27 bp):
TACCCTCGATTTACAAAATTACCATTT
Found at i:6084936 original size:81 final size:81
Alignment explanation
Indices: 6084846--6085018 Score: 267
Period size: 81 Copynumber: 2.1 Consensus size: 81
6084836 ATTACCAAAG
* **
6084846 TACCCTCGATTTACAGAATTATCGTTTTACCCTCGATTTACAAAATTACTGCTTTACCCTC-GAT
1 TACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTTACAAAATTACCACTTTACCCTCAG-T
* *
6084910 TTATAGAATTACCATTT
65 TTACAAAATTACCATTT
* *
6084927 TACCCTCGATTTACAGAATTACCGTTTTACCCTTGATTTACAAAATTACCATTTTACCCTCAGTT
1 TACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTTACAAAATTACCACTTTACCCTCAGTT
6084992 TACAAAATTACCATTT
66 TACAAAATTACCATTT
6085008 TACCCTCGATT
1 TACCCTCGATT
6085019 GTTAAATTAC
Statistics
Matches: 84, Mismatches: 7, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
81 83 0.99
82 1 0.01
ACGTcount: A:0.29, C:0.25, G:0.08, T:0.39
Consensus pattern (81 bp):
TACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTTACAAAATTACCACTTTACCCTCAGTT
TACAAAATTACCATTT
Found at i:6085084 original size:27 final size:27
Alignment explanation
Indices: 6085017--6085197 Score: 141
Period size: 27 Copynumber: 6.7 Consensus size: 27
6085007 TTACCCTCGA
* *
6085017 TTGTTAAATTACTAAAATACCCCTAG-
1 TTGTAAAATTACCAAAATACCCCTAGT
** * *
6085043 AGGATAGATTTACCAAAATACCCCTAGT
1 TTG-TAAAATTACCAAAATACCCCTAGT
* *
6085071 TTGTAAAATGACCAAAATACCCTTAGT
1 TTGTAAAATTACCAAAATACCCCTAGT
* * ** *
6085098 TTGTAAAATTAACGAAATACTACTGGT
1 TTGTAAAATTACCAAAATACCCCTAGT
* *
6085125 TTGTGAAATTACCAAAATA-CCCTCAAT
1 TTGTAAAATTACCAAAATACCCCT-AGT
* * *
6085152 TTTTAAAATTACCCAAATACCCCTAAT
1 TTGTAAAATTACCAAAATACCCCTAGT
** *
6085179 TTACAAAATTACAAAAATA
1 TTGTAAAATTACCAAAATA
6085198 GCCTTGACTT
Statistics
Matches: 118, Mismatches: 33, Indels: 7
0.75 0.21 0.04
Matches are distributed among these distances:
26 3 0.03
27 110 0.93
28 5 0.04
ACGTcount: A:0.43, C:0.19, G:0.08, T:0.30
Consensus pattern (27 bp):
TTGTAAAATTACCAAAATACCCCTAGT
Found at i:6085116 original size:54 final size:54
Alignment explanation
Indices: 6085058--6085266 Score: 170
Period size: 54 Copynumber: 3.8 Consensus size: 54
6085048 AGATTTACCA
* *
6085058 AAATACCCCTAGTTTGTAAAATGACCAAAATACCCTTAGTTTGTAAAATTAACG
1 AAATACCCCTAGTTTGCAAAATTACCAAAATACCCTTAGTTTGTAAAATTAACG
** * ** * * * * *
6085112 AAATACTACTGGTTTGTGAAATTACCAAAATACCCTCAATTTTTAAAATTACCC
1 AAATACCCCTAGTTTGCAAAATTACCAAAATACCCTTAGTTTGTAAAATTAACG
* * * * * *
6085166 AAATACCCCTAATTTACAAAATTACAAAAATAGCCTTGACTTTCTAAAAATTATA-G
1 AAATACCCCTAGTTTGCAAAATTACCAAAATACCCTT-AGTTTGT-AAAATTA-ACG
* ** *
6085222 AAATA-CCATAGGTTTGCAAAATTACTTAAATACCCTTGGTTTGTA
1 AAATACCCCTA-GTTTGCAAAATTACCAAAATACCCTTAGTTTGTA
6085267 GATTTACCAA
Statistics
Matches: 118, Mismatches: 33, Indels: 8
0.74 0.21 0.05
Matches are distributed among these distances:
54 72 0.61
55 13 0.11
56 33 0.28
ACGTcount: A:0.41, C:0.18, G:0.09, T:0.32
Consensus pattern (54 bp):
AAATACCCCTAGTTTGCAAAATTACCAAAATACCCTTAGTTTGTAAAATTAACG
Found at i:6085274 original size:110 final size:108
Alignment explanation
Indices: 6085047--6085283 Score: 235
Period size: 110 Copynumber: 2.2 Consensus size: 108
6085037 CCCTAGAGGA
* ** * * *
6085047 TAGATTTACCAAAATACCCCTAGTTTGTAAAATGACCAAAATACCCTTAGTTTGTAAAATTAACG
1 TAGATTTACCAAAATACCCCTAATTTACAAAATGACAAAAATACCCTTACTTTCTAAAATTAACG
* ** *
6085112 AAATACTACTGGTTTGTGAAATTACCAAAATACCCTCAATTTT
66 AAATACCACTGGTTTGCAAAATTACCAAAATACCCTCAATTTG
* * * * *
6085155 TAAAATTACCCAAATACCCCTAATTTACAAAATTACAAAAATAGCCTTGACTTTCTAAAAATTAT
1 TAGATTTACCAAAATACCCCTAATTTACAAAATGACAAAAATACCCTT-ACTTTCT-AAAATTA-
** ***
6085220 A-GAAATACCA-TAGGTTTGCAAAATTACTTAAATACCCTTGGTTTG
63 ACGAAATACCACT-GGTTTGCAAAATTACCAAAATACCCTCAATTTG
*
6085265 TAGATTTACCAAAACACCC
1 TAGATTTACCAAAATACCC
6085284 TTCTAGGATG
Statistics
Matches: 101, Mismatches: 24, Indels: 6
0.77 0.18 0.05
Matches are distributed among these distances:
108 39 0.39
109 6 0.06
110 55 0.54
111 1 0.01
ACGTcount: A:0.41, C:0.19, G:0.09, T:0.31
Consensus pattern (108 bp):
TAGATTTACCAAAATACCCCTAATTTACAAAATGACAAAAATACCCTTACTTTCTAAAATTAACG
AAATACCACTGGTTTGCAAAATTACCAAAATACCCTCAATTTG
Found at i:6085343 original size:26 final size:27
Alignment explanation
Indices: 6085304--6085377 Score: 71
Period size: 27 Copynumber: 2.7 Consensus size: 27
6085294 AAATGACTAA
*
6085304 AATACTCCTAATA-GGTAAAAAGACCGT
1 AATACCCCT-ATAGGGTAAAAAGACCGT
**
6085331 AA-AGCCCCTATAGGGTAAAGTGACCGT
1 AATA-CCCCTATAGGGTAAAAAGACCGT
* *
6085358 AATACCCCTGTATGGTAAAA
1 AATACCCCTATAGGGTAAAA
6085378 TGACAAATAT
Statistics
Matches: 38, Mismatches: 6, Indels: 6
0.76 0.12 0.12
Matches are distributed among these distances:
26 4 0.11
27 33 0.87
28 1 0.03
ACGTcount: A:0.39, C:0.20, G:0.19, T:0.22
Consensus pattern (27 bp):
AATACCCCTATAGGGTAAAAAGACCGT
Found at i:6085365 original size:27 final size:27
Alignment explanation
Indices: 6085317--6085381 Score: 78
Period size: 27 Copynumber: 2.4 Consensus size: 27
6085307 ACTCCTAATA
*
6085317 GGTAAAAAGACCGTAAAGCCCCTATAG
1 GGTAAAATGACCGTAAAGCCCCTATAG
* * *
6085344 GGTAAAGTGACCGTAATA-CCCCTGTAT
1 GGTAAAATGACCGTAA-AGCCCCTATAG
6085371 GGTAAAATGAC
1 GGTAAAATGAC
6085382 AAATATGCCC
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
27 31 0.97
28 1 0.03
ACGTcount: A:0.37, C:0.20, G:0.23, T:0.20
Consensus pattern (27 bp):
GGTAAAATGACCGTAAAGCCCCTATAG
Found at i:6087660 original size:27 final size:26
Alignment explanation
Indices: 6087629--6087806 Score: 169
Period size: 27 Copynumber: 6.6 Consensus size: 26
6087619 TAAATTGTAC
6087629 AGCACTAAGTGTGCGATTCGACTATGT
1 AGCACTAAGTGTGCGATT-GACTATGT
* ** *
6087656 TGCACTAAGTGTGCGAAACGAATATG-
1 AGCACTAAGTGTGCG-ATTGACTATGT
* *
6087682 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCG-ATTGACTATGT
*
6087710 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA--TTGACTATGT
* *
6087738 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGA-TTGACTATGT
* *
6087765 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGA-TTGACTATGT
*
6087792 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
6087807 GACTCAATAT
Statistics
Matches: 127, Mismatches: 19, Indels: 10
0.81 0.12 0.06
Matches are distributed among these distances:
26 1 0.01
27 102 0.80
28 24 0.19
ACGTcount: A:0.27, C:0.16, G:0.28, T:0.29
Consensus pattern (26 bp):
AGCACTAAGTGTGCGATTGACTATGT
Found at i:6087770 original size:82 final size:81
Alignment explanation
Indices: 6087630--6087785 Score: 215
Period size: 82 Copynumber: 1.9 Consensus size: 81
6087620 AAATTGTACA
* *
6087630 GCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAACGAATATGATGCACTAAGTGT
1 GCACTAAGTGTGCGATTCGACTATGTAGCACTAAGTGTGCGAAACGAATACGATGCACTAAGTGT
6087695 GCGAATTGACCATGCG
66 GCGAATTGACCATGCG
* *** *
6087711 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACTAAGT
1 GCACTAAGTGTGCGA-TTCGACTATGTAGCACTAAGTGTGCGAAACGAATACGAT-GCACTAAGT
*
6087775 GTGCGAGTTGA
64 GTGCGAATTGA
6087786 TTATATAGCA
Statistics
Matches: 65, Mismatches: 8, Indels: 3
0.86 0.11 0.04
Matches are distributed among these distances:
81 16 0.25
82 49 0.75
ACGTcount: A:0.27, C:0.17, G:0.28, T:0.28
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTCGACTATGTAGCACTAAGTGTGCGAAACGAATACGATGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:6087797 original size:82 final size:81
Alignment explanation
Indices: 6087626--6087806 Score: 211
Period size: 82 Copynumber: 2.2 Consensus size: 81
6087616 GATTAAATTG
* *
6087626 TACAGCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAACGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTCGACTATGTAGCACTAAGTGTGCGAAACGAATACGATGCACTAA
6087691 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * * *** *
6087707 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTCGACTATGTAGCACTAAGTGTGCGAAACGAATACGAT-GCACT
* **
6087771 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
6087789 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
6087807 GACTCAATAT
Statistics
Matches: 82, Mismatches: 16, Indels: 3
0.81 0.16 0.03
Matches are distributed among these distances:
81 18 0.22
82 64 0.78
ACGTcount: A:0.27, C:0.17, G:0.28, T:0.29
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTCGACTATGTAGCACTAAGTGTGCGAAACGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:6095774 original size:27 final size:27
Alignment explanation
Indices: 6095743--6095920 Score: 196
Period size: 27 Copynumber: 6.6 Consensus size: 27
6095733 TAAATTGTAC
6095743 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* *** *
6095770 TGCACTAAGTGTGCGAAACGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
6095796 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
6095824 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
6095852 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
6095879 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
6095906 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
6095921 GACTCAATAT
Statistics
Matches: 127, Mismatches: 21, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
27 104 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.16, G:0.28, T:0.29
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:6095884 original size:82 final size:81
Alignment explanation
Indices: 6095744--6095899 Score: 224
Period size: 82 Copynumber: 1.9 Consensus size: 81
6095734 AAATTGTACA
* *
6095744 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAACGAATATGATGCACTAAGTGT
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAACGAATACGATGCACTAAGTGT
6095809 GCGAATTGACCATGCG
66 GCGAATTGACCATGCG
*** *
6095825 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACTAAGT
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAACGAATACGAT-GCACTAAGT
*
6095889 GTGCGAGTTGA
64 GTGCGAATTGA
6095900 TTATATAGCA
Statistics
Matches: 66, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
81 16 0.24
82 50 0.76
ACGTcount: A:0.27, C:0.16, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAACGAATACGATGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:6095911 original size:82 final size:81
Alignment explanation
Indices: 6095740--6095920 Score: 220
Period size: 82 Copynumber: 2.2 Consensus size: 81
6095730 GATTAAATTG
* *
6095740 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAACGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAACGAATACGATGCACTAA
6095805 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * *** *
6095821 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAACGAATACGAT-GCACT
* **
6095885 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
6095903 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
6095921 GACTCAATAT
Statistics
Matches: 83, Mismatches: 15, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
81 18 0.22
82 65 0.78
ACGTcount: A:0.27, C:0.16, G:0.28, T:0.29
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAACGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:6103897 original size:27 final size:27
Alignment explanation
Indices: 6103866--6104043 Score: 196
Period size: 27 Copynumber: 6.6 Consensus size: 27
6103856 TAAATTGTAC
6103866 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* *** *
6103893 TGCACTAAGTGTGCGAAACGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
6103919 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
6103947 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
6103975 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
6104002 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
6104029 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
6104044 GACTCAATAT
Statistics
Matches: 127, Mismatches: 21, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
27 104 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.16, G:0.28, T:0.29
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:6104007 original size:82 final size:81
Alignment explanation
Indices: 6103867--6104022 Score: 224
Period size: 82 Copynumber: 1.9 Consensus size: 81
6103857 AAATTGTACA
* *
6103867 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAACGAATATGATGCACTAAGTGT
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAACGAATACGATGCACTAAGTGT
6103932 GCGAATTGACCATGCG
66 GCGAATTGACCATGCG
*** *
6103948 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACTAAGT
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAACGAATACGAT-GCACTAAGT
*
6104012 GTGCGAGTTGA
64 GTGCGAATTGA
6104023 TTATATAGCA
Statistics
Matches: 66, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
81 16 0.24
82 50 0.76
ACGTcount: A:0.27, C:0.16, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAACGAATACGATGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:6104034 original size:82 final size:81
Alignment explanation
Indices: 6103863--6104043 Score: 220
Period size: 82 Copynumber: 2.2 Consensus size: 81
6103853 GATTAAATTG
* *
6103863 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAACGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAACGAATACGATGCACTAA
6103928 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * *** *
6103944 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAACGAATACGAT-GCACT
* **
6104008 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
6104026 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
6104044 GACTCAATAT
Statistics
Matches: 83, Mismatches: 15, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
81 18 0.22
82 65 0.78
ACGTcount: A:0.27, C:0.16, G:0.28, T:0.29
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAACGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:6109061 original size:12 final size:12
Alignment explanation
Indices: 6109044--6109085 Score: 61
Period size: 12 Copynumber: 3.6 Consensus size: 12
6109034 TATACAAGTT
6109044 AAAAAAAATTCG
1 AAAAAAAATTCG
6109056 AAAAAAAATTC-
1 AAAAAAAATTCG
6109067 AAAAAAAA-TCTG
1 AAAAAAAATTC-G
6109079 AAAAAAA
1 AAAAAAA
6109086 GTGTTTTATG
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
10 2 0.07
11 8 0.29
12 18 0.64
ACGTcount: A:0.74, C:0.07, G:0.05, T:0.14
Consensus pattern (12 bp):
AAAAAAAATTCG
Found at i:6110007 original size:9 final size:10
Alignment explanation
Indices: 6110000--6110056 Score: 55
Period size: 11 Copynumber: 5.5 Consensus size: 10
6109990 AAGAGAAAAC
6110000 AAAGAAAAGA
1 AAAGAAAAGA
6110010 AAAGAAAAAGCA
1 AAAG-AAAAG-A
*
6110022 AAAGAAGA-A
1 AAAGAAAAGA
6110031 AAAGAAAATGA
1 AAAGAAAA-GA
6110042 AATA-AAAAGA
1 AA-AGAAAAGA
6110052 AAAGA
1 AAAGA
6110057 GGGACAATAG
Statistics
Matches: 39, Mismatches: 2, Indels: 12
0.74 0.04 0.23
Matches are distributed among these distances:
9 9 0.23
10 9 0.23
11 15 0.38
12 6 0.15
ACGTcount: A:0.77, C:0.02, G:0.18, T:0.04
Consensus pattern (10 bp):
AAAGAAAAGA
Found at i:6110023 original size:21 final size:20
Alignment explanation
Indices: 6109989--6110056 Score: 66
Period size: 21 Copynumber: 3.2 Consensus size: 20
6109979 ACATTCTTGT
6109989 AAAGAGAAAA-CAAAGAAAAGA
1 AAAGA-AAAAGCAAA-AAAAGA
*
6110010 AAAGAAAAAGCAAAAGAAGAA
1 AAAGAAAAAGCAAAAAAAG-A
* *
6110031 AAAGAAAATGAAATAAAAAGA
1 AAAGAAAAAGCAA-AAAAAGA
6110052 AAAGA
1 AAAGA
6110057 GGGACAATAG
Statistics
Matches: 40, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
20 8 0.20
21 27 0.68
22 5 0.12
ACGTcount: A:0.76, C:0.03, G:0.18, T:0.03
Consensus pattern (20 bp):
AAAGAAAAAGCAAAAAAAGA
Found at i:6110024 original size:6 final size:5
Alignment explanation
Indices: 6110000--6110056 Score: 55
Period size: 5 Copynumber: 11.0 Consensus size: 5
6109990 AAGAGAAAAC
*
6110000 AAAGA AAAGA AAAGAA AAAGCA AAAGA AGA-A AAAGA AAATGA AATA-A
1 AAAGA AAAGA AAAG-A AAAG-A AAAGA AAAGA AAAGA AAA-GA AA-AGA
6110047 AAAGA AAAGA
1 AAAGA AAAGA
6110057 GGGACAATAG
Statistics
Matches: 44, Mismatches: 3, Indels: 10
0.77 0.05 0.18
Matches are distributed among these distances:
4 4 0.09
5 25 0.57
6 14 0.32
7 1 0.02
ACGTcount: A:0.77, C:0.02, G:0.18, T:0.04
Consensus pattern (5 bp):
AAAGA
Found at i:6110031 original size:15 final size:14
Alignment explanation
Indices: 6110000--6110056 Score: 60
Period size: 16 Copynumber: 3.7 Consensus size: 14
6109990 AAGAGAAAAC
6110000 AAAGAAAAGAAAAGAA
1 AAAGAAAAG--AAGAA
6110016 AAAGCAAAAGAAGAA
1 AAAG-AAAAGAAGAA
*
6110031 AAAGAAAATGAAATAA
1 AAAGAAAA-G-AAGAA
6110047 AAAGAAAAGA
1 AAAGAAAAGA
6110057 GGGACAATAG
Statistics
Matches: 37, Mismatches: 1, Indels: 8
0.80 0.02 0.17
Matches are distributed among these distances:
14 5 0.14
15 11 0.30
16 16 0.43
17 5 0.14
ACGTcount: A:0.77, C:0.02, G:0.18, T:0.04
Consensus pattern (14 bp):
AAAGAAAAGAAGAA
Found at i:6110122 original size:11 final size:12
Alignment explanation
Indices: 6110090--6110120 Score: 62
Period size: 12 Copynumber: 2.6 Consensus size: 12
6110080 TTGAGAGAAC
6110090 TTGAAAAAGCCT
1 TTGAAAAAGCCT
6110102 TTGAAAAAGCCT
1 TTGAAAAAGCCT
6110114 TTGAAAA
1 TTGAAAA
6110121 GCAAAAAGAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.45, C:0.13, G:0.16, T:0.26
Consensus pattern (12 bp):
TTGAAAAAGCCT
Found at i:6110131 original size:12 final size:12
Alignment explanation
Indices: 6110123--6110147 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
6110113 TTTGAAAAGC
6110123 AAAAAGAAAATG
1 AAAAAGAAAATG
6110135 AAAAAGAAAATG
1 AAAAAGAAAATG
6110147 A
1 A
6110148 GATTGAAAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.76, C:0.00, G:0.16, T:0.08
Consensus pattern (12 bp):
AAAAAGAAAATG
Found at i:6110144 original size:18 final size:18
Alignment explanation
Indices: 6110117--6110172 Score: 60
Period size: 18 Copynumber: 3.1 Consensus size: 18
6110107 AAAGCCTTTG
*
6110117 AAAAGCAAAAAGAAAATGA
1 AAAAG-AAAATGAAAATGA
* *
6110136 AAAAGAAAATGAGATTGA
1 AAAAGAAAATGAAAATGA
*
6110154 AAAAGAGAATGAAAA-GA
1 AAAAGAAAATGAAAATGA
6110171 AA
1 AA
6110173 TTTGAGAGTG
Statistics
Matches: 31, Mismatches: 6, Indels: 2
0.79 0.15 0.05
Matches are distributed among these distances:
17 4 0.13
18 22 0.71
19 5 0.16
ACGTcount: A:0.70, C:0.02, G:0.20, T:0.09
Consensus pattern (18 bp):
AAAAGAAAATGAAAATGA
Done.