Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr9
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 91122320
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2661692 characters in sequence are not A, C, G, or T
File 184 of 279
Found at i:60374368 original size:14 final size:14
Alignment explanation
Indices: 60374349--60374379 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
60374339 CAACATGACA
60374349 TAAAAATAATGGAC
1 TAAAAATAATGGAC
*
60374363 TAAAAATGATGGAC
1 TAAAAATAATGGAC
60374377 TAA
1 TAA
60374380 CAAGCAAATA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.55, C:0.06, G:0.16, T:0.23
Consensus pattern (14 bp):
TAAAAATAATGGAC
Found at i:60376917 original size:88 final size:88
Alignment explanation
Indices: 60376716--60376917 Score: 323
Period size: 88 Copynumber: 2.3 Consensus size: 88
60376706 CGATTTTCTC
* * *
60376716 CACTGCAACTTCAGGAAGACAAGATCTGCAATCTTCGGCCTACTCTATTACAACTTTAGGGAGAT
1 CACTGCAACTTCAGGAAGACAAGATTTGCAATCTTCGGCCTACTCCACTACAACTTTAGGGAGAT
* *
60376781 AGGGTGGTGGCTTAAATCTGCTT
66 AAGGTGGTGGCTTAAATATGCTT
* *
60376804 CACTGCAACTTCAAGAAGACAAGATTTGCAATCTTTGGCCTACTCCACTACAACTTTAGGGAGAT
1 CACTGCAACTTCAGGAAGACAAGATTTGCAATCTTCGGCCTACTCCACTACAACTTTAGGGAGAT
60376869 AAGGTGGTGGCTTAAATATGCTT
66 AAGGTGGTGGCTTAAATATGCTT
* *
60376892 CACTGCAACTTTAGGAAGCCAAGATT
1 CACTGCAACTTCAGGAAGACAAGATT
60376918 CACCGTCTTC
Statistics
Matches: 104, Mismatches: 10, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
88 104 1.00
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.28
Consensus pattern (88 bp):
CACTGCAACTTCAGGAAGACAAGATTTGCAATCTTCGGCCTACTCCACTACAACTTTAGGGAGAT
AAGGTGGTGGCTTAAATATGCTT
Found at i:60376938 original size:88 final size:88
Alignment explanation
Indices: 60376716--60376954 Score: 273
Period size: 88 Copynumber: 2.7 Consensus size: 88
60376706 CGATTTTCTC
* * * * *
60376716 CACTGCAACTTCAGGAAGACAAGA-TCTGCAATCTTCGGCCTACTCTATTACAACTTTAGGGAGA
1 CACTGCAACTTCAAGAAGACAAGATTC-ACAATCTTCGACCTACTCCACTACAACTTTAGGGAGA
* *
60376780 TAGGGTGGTGGCTTAAATCTGCTT
65 TAAGGTGGTGGCTTAAATATGCTT
** * *
60376804 CACTGCAACTTCAAGAAGACAAGATTTGCAATCTTTGGCCTACTCCACTACAACTTTAGGGAGAT
1 CACTGCAACTTCAAGAAGACAAGATTCACAATCTTCGACCTACTCCACTACAACTTTAGGGAGAT
60376869 AAGGTGGTGGCTTAAATATGCTT
66 AAGGTGGTGGCTTAAATATGCTT
* * * ** * * ** *
60376892 CACTGCAACTTTAGGAAGCCAAGATTCACCGTCTTCGATCTGCTCCACTGTAACTTCAGGGAG
1 CACTGCAACTTCAAGAAGACAAGATTCACAATCTTCGACCTACTCCACTACAACTTTAGGGAG
60376955 GCAAGATCTA
Statistics
Matches: 129, Mismatches: 21, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
88 128 0.99
89 1 0.01
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (88 bp):
CACTGCAACTTCAAGAAGACAAGATTCACAATCTTCGACCTACTCCACTACAACTTTAGGGAGAT
AAGGTGGTGGCTTAAATATGCTT
Found at i:60376971 original size:133 final size:133
Alignment explanation
Indices: 60376796--60377094 Score: 411
Period size: 133 Copynumber: 2.2 Consensus size: 133
60376786 GGTGGCTTAA
* * * * ***
60376796 ATCTGCTTCACTGCAACTTCAAGAAGACAAGATTTGCAATCTTTGGCCTACTCCACTACAACTTT
1 ATCTGCTCCACTGCAACTTCAGGAAGACAAGATCTACAATCTTCAACCTACTCCACTACAACTTT
* *
60376861 AGGGAGATAAGG-TGGTGGCTTAAATATGCTTCACTGCAACTTTAGGAAGCCAAGATTCACCGTC
66 AGGGAGAT-AGGATGGTGGCTTAAATATACTTCACTGCAACTTTAGGAAGACAAGATTCACCGTC
60376925 TTCG
130 TTCG
* * * *
60376929 ATCTGCTCCACTGTAACTTCAGGGAGGCAAGATCTACAATCTTCAACCTACTCTACTACAACTTT
1 ATCTGCTCCACTGCAACTTCAGGAAGACAAGATCTACAATCTTCAACCTACTCCACTACAACTTT
* ** *
60376994 AGGGAGATAGGATGGTGGCTTAAATCTACTTCACTGCAACTTTAGGAAGACAAGATTTGCCTTCT
66 AGGGAGATAGGATGGTGGCTTAAATATACTTCACTGCAACTTTAGGAAGACAAGATTCACCGTCT
60377059 TCG
131 TCG
* *
60377062 ATCTGCTCCACCGCAACTTCAGGAAAACAAGAT
1 ATCTGCTCCACTGCAACTTCAGGAAGACAAGAT
60377095 TTGTAGAATT
Statistics
Matches: 143, Mismatches: 22, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
132 3 0.02
133 140 0.98
ACGTcount: A:0.29, C:0.24, G:0.19, T:0.28
Consensus pattern (133 bp):
ATCTGCTCCACTGCAACTTCAGGAAGACAAGATCTACAATCTTCAACCTACTCCACTACAACTTT
AGGGAGATAGGATGGTGGCTTAAATATACTTCACTGCAACTTTAGGAAGACAAGATTCACCGTCT
TCG
Found at i:60378471 original size:88 final size:88
Alignment explanation
Indices: 60378270--60378471 Score: 332
Period size: 88 Copynumber: 2.3 Consensus size: 88
60378260 CGATTTTCTC
* * *
60378270 CACTGCAACTTCAGGAAGACAAGATCTGCAATCTTCGGCCTACTCTATTACAACTTTAGGGAGAT
1 CACTGCAACTTCAGGAAGACAAGATTTGCAATCTTCGGCCTACTCCACTACAACTTTAGGGAGAT
* *
60378335 AGGGTGGTGGCTTAAATCTGCTT
66 AAGGTGGTGGCTTAAATATGCTT
*
60378358 CACTGCAACTTCAAGAAGACAAGATTTGCAATCTTCGGCCTACTCCACTACAACTTTAGGGAGAT
1 CACTGCAACTTCAGGAAGACAAGATTTGCAATCTTCGGCCTACTCCACTACAACTTTAGGGAGAT
60378423 AAGGTGGTGGCTTAAATATGCTT
66 AAGGTGGTGGCTTAAATATGCTT
* *
60378446 CACTGCAACTTTAGGAAGCCAAGATT
1 CACTGCAACTTCAGGAAGACAAGATT
60378472 CGCCGTCTGC
Statistics
Matches: 105, Mismatches: 9, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
88 105 1.00
ACGTcount: A:0.30, C:0.22, G:0.21, T:0.27
Consensus pattern (88 bp):
CACTGCAACTTCAGGAAGACAAGATTTGCAATCTTCGGCCTACTCCACTACAACTTTAGGGAGAT
AAGGTGGTGGCTTAAATATGCTT
Found at i:60378492 original size:88 final size:88
Alignment explanation
Indices: 60378270--60378508 Score: 282
Period size: 88 Copynumber: 2.7 Consensus size: 88
60378260 CGATTTTCTC
* * * * *
60378270 CACTGCAACTTCAGGAAGACAAGA-TCTGCAATCTTCGGCCTACTCTATTACAACTTTAGGGAGA
1 CACTGCAACTTCAAGAAGACAAGATTC-GCAATCTGCGACCTACTCCACTACAACTTTAGGGAGA
* *
60378334 TAGGGTGGTGGCTTAAATCTGCTT
65 TAAGGTGGTGGCTTAAATATGCTT
* * *
60378358 CACTGCAACTTCAAGAAGACAAGATTTGCAATCTTCGGCCTACTCCACTACAACTTTAGGGAGAT
1 CACTGCAACTTCAAGAAGACAAGATTCGCAATCTGCGACCTACTCCACTACAACTTTAGGGAGAT
60378423 AAGGTGGTGGCTTAAATATGCTT
66 AAGGTGGTGGCTTAAATATGCTT
* * * ** * * ** *
60378446 CACTGCAACTTTAGGAAGCCAAGATTCGCCGTCTGCGATCTGCTCCACTGTAACTTCAGGGAG
1 CACTGCAACTTCAAGAAGACAAGATTCGCAATCTGCGACCTACTCCACTACAACTTTAGGGAG
60378509 GCAAGATCTA
Statistics
Matches: 131, Mismatches: 19, Indels: 2
0.86 0.12 0.01
Matches are distributed among these distances:
88 130 0.99
89 1 0.01
ACGTcount: A:0.28, C:0.23, G:0.22, T:0.27
Consensus pattern (88 bp):
CACTGCAACTTCAAGAAGACAAGATTCGCAATCTGCGACCTACTCCACTACAACTTTAGGGAGAT
AAGGTGGTGGCTTAAATATGCTT
Found at i:60378514 original size:133 final size:133
Alignment explanation
Indices: 60378350--60378648 Score: 429
Period size: 133 Copynumber: 2.2 Consensus size: 133
60378340 GGTGGCTTAA
* * * * **
60378350 ATCTGCTTCACTGCAACTTCAAGAAGACAAGATTTGCAATCTTCGGCCTACTCCACTACAACTTT
1 ATCTGCTCCACTGCAACTTCAGGAAGACAAGATCTACAATCTTCAACCTACTCCACTACAACTTT
* *
60378415 AGGGAGATAAGG-TGGTGGCTTAAATATGCTTCACTGCAACTTTAGGAAGCCAAGATTCGCCGTC
66 AGGGAGAT-AGGATGGTGGCTTAAATATACTTCACTGCAACTTTAGGAAGACAAGATTCGCCGTC
60378479 TGCG
130 TGCG
* * * *
60378483 ATCTGCTCCACTGTAACTTCAGGGAGGCAAGATCTACAATCTTCAACCTACTCTACTACAACTTT
1 ATCTGCTCCACTGCAACTTCAGGAAGACAAGATCTACAATCTTCAACCTACTCCACTACAACTTT
* *
60378548 AGGGAGATAGGATGGTGGCTTAAATCTACTTCACTGCAACTTTAGGAAGACAAGATTTGCCGTCT
66 AGGGAGATAGGATGGTGGCTTAAATATACTTCACTGCAACTTTAGGAAGACAAGATTCGCCGTCT
*
60378613 TCG
131 GCG
* *
60378616 ATCTGCTCCACCGCAACTTCAGGAAAACAAGAT
1 ATCTGCTCCACTGCAACTTCAGGAAGACAAGAT
60378649 TTGTAAAATT
Statistics
Matches: 145, Mismatches: 20, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
132 3 0.02
133 142 0.98
ACGTcount: A:0.29, C:0.24, G:0.20, T:0.27
Consensus pattern (133 bp):
ATCTGCTCCACTGCAACTTCAGGAAGACAAGATCTACAATCTTCAACCTACTCCACTACAACTTT
AGGGAGATAGGATGGTGGCTTAAATATACTTCACTGCAACTTTAGGAAGACAAGATTCGCCGTCT
GCG
Found at i:60390134 original size:131 final size:131
Alignment explanation
Indices: 60389973--60390227 Score: 384
Period size: 131 Copynumber: 1.9 Consensus size: 131
60389963 TTTAGAAAAC
** ** *
60389973 ATGAGTGAAATTTTAAAAAGATATTCGATTATTTTGAACAAATGGGAAATTGCAACCTAGCACGA
1 ATGAGTGAAATTCCAAAAAGATATTCGATTATTTTGAACAAACAGGAAATTGCAACCTAGCACAA
* * ** * *
60390038 TAGTGCACAATTCCCCGAATTGCCAAACATCGAACATTTCCTTCGTTTTAAGGAATTTTTAAAGA
66 TAGGGCACAATTCCCCGAATTACCAAACATCGAACATCGCCTTCGCTTTAAAGAATTTTTAAAGA
60390103 T
131 T
**
60390104 ATGAGTGAAATTCCAAAGGGATATTCGATTATTTTGAACAAACAGGAAATTGCAACCTAGCACAA
1 ATGAGTGAAATTCCAAAAAGATATTCGATTATTTTGAACAAACAGGAAATTGCAACCTAGCACAA
*
60390169 TAGGGCACGATTCCCCGAATTACCAAACATCGAACATCGCCTTCGCTTTAAAGAATTTT
66 TAGGGCACAATTCCCCGAATTACCAAACATCGAACATCGCCTTCGCTTTAAAGAATTTT
60390228 CTTTTAAACA
Statistics
Matches: 110, Mismatches: 14, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
131 110 1.00
ACGTcount: A:0.36, C:0.18, G:0.16, T:0.29
Consensus pattern (131 bp):
ATGAGTGAAATTCCAAAAAGATATTCGATTATTTTGAACAAACAGGAAATTGCAACCTAGCACAA
TAGGGCACAATTCCCCGAATTACCAAACATCGAACATCGCCTTCGCTTTAAAGAATTTTTAAAGA
T
Found at i:60405545 original size:25 final size:26
Alignment explanation
Indices: 60405498--60405548 Score: 77
Period size: 25 Copynumber: 2.0 Consensus size: 26
60405488 AGCTACCCAT
* *
60405498 TATTGGCTGGCATGAGCTTCCTGTTA
1 TATTGCCTGGCATAAGCTTCCTGTTA
60405524 TATTGCCTGG-ATAAGCTTCCTGTTA
1 TATTGCCTGGCATAAGCTTCCTGTTA
60405549 CATGGCTTAC
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 14 0.61
26 9 0.39
ACGTcount: A:0.18, C:0.20, G:0.24, T:0.39
Consensus pattern (26 bp):
TATTGCCTGGCATAAGCTTCCTGTTA
Found at i:60407536 original size:37 final size:40
Alignment explanation
Indices: 60407479--60407565 Score: 126
Period size: 37 Copynumber: 2.2 Consensus size: 40
60407469 CATGTGACAC
* *
60407479 AGGTTTAGCCTGGACTGATAATCTATTATCGT-TT-T-AA
1 AGGTTTAGCCTAGACCGATAATCTATTATCGTGTTGTCAA
*
60407516 AGGTTTAGCCTAGACCGATAATCTATTATTGTGTTGTCAA
1 AGGTTTAGCCTAGACCGATAATCTATTATCGTGTTGTCAA
60407556 AGGTTTAGCC
1 AGGTTTAGCC
60407566 CGGGCGAGTA
Statistics
Matches: 44, Mismatches: 3, Indels: 3
0.88 0.06 0.06
Matches are distributed among these distances:
37 29 0.66
38 2 0.05
39 1 0.02
40 12 0.27
ACGTcount: A:0.26, C:0.15, G:0.21, T:0.38
Consensus pattern (40 bp):
AGGTTTAGCCTAGACCGATAATCTATTATCGTGTTGTCAA
Found at i:60412422 original size:9 final size:9
Alignment explanation
Indices: 60412408--60412474 Score: 71
Period size: 9 Copynumber: 7.2 Consensus size: 9
60412398 TTCTTTCTTC
60412408 TTTTTTATT
1 TTTTTTATT
*
60412417 TTTTTTCTT
1 TTTTTTATT
* *
60412426 TATTTTCTT
1 TTTTTTATT
*
60412435 TTTTTAATT
1 TTTTTTATT
*
60412444 TTTCTTCTCTT
1 TTT-TT-TATT
60412455 TTTTTTATT
1 TTTTTTATT
60412464 TTTTTTATT
1 TTTTTTATT
60412473 TT
1 TT
60412475 GATCTCTTTT
Statistics
Matches: 48, Mismatches: 8, Indels: 4
0.80 0.13 0.07
Matches are distributed among these distances:
9 39 0.81
10 4 0.08
11 5 0.10
ACGTcount: A:0.09, C:0.07, G:0.00, T:0.84
Consensus pattern (9 bp):
TTTTTTATT
Found at i:60412483 original size:48 final size:47
Alignment explanation
Indices: 60412396--60412487 Score: 125
Period size: 47 Copynumber: 1.9 Consensus size: 47
60412386 TGCCCTCTCC
*
60412396 TTTTCTTTCTTCTTTTTTATTTTTTTTCTTTATTTTCTTTTTTTAAT
1 TTTTCTTTCTTCTTTTTTATTTTTTTTCTTTATTCTCTTTTTTTAAT
*
60412443 TTTTCTTCTCTT-TTTTTTATTTTTTTTATTT-TGATCTCTTTTTTT
1 TTTTCTT-TCTTCTTTTTTATTTTTTTTCTTTAT--TCTCTTTTTTT
60412488 TAAAGGTCTC
Statistics
Matches: 40, Mismatches: 2, Indels: 5
0.85 0.04 0.11
Matches are distributed among these distances:
46 1 0.03
47 25 0.62
48 14 0.35
ACGTcount: A:0.08, C:0.11, G:0.01, T:0.80
Consensus pattern (47 bp):
TTTTCTTTCTTCTTTTTTATTTTTTTTCTTTATTCTCTTTTTTTAAT
Found at i:60417252 original size:53 final size:53
Alignment explanation
Indices: 60417190--60417301 Score: 206
Period size: 53 Copynumber: 2.1 Consensus size: 53
60417180 TGATGTAAAC
60417190 AATATATATAATGAAGATATAATAAAAATAAAGAATAAACAATATACATAAAAG
1 AATA-ATATAATGAAGATATAATAAAAATAAAGAATAAACAATATACATAAAAG
*
60417244 AATAATATAATGAAGATATAATAAAAATAAGGAATAAACAATATACATAAAAG
1 AATAATATAATGAAGATATAATAAAAATAAAGAATAAACAATATACATAAAAG
60417297 AATAA
1 AATAA
60417302 CAAGCCAATA
Statistics
Matches: 57, Mismatches: 1, Indels: 1
0.97 0.02 0.02
Matches are distributed among these distances:
53 53 0.93
54 4 0.07
ACGTcount: A:0.65, C:0.04, G:0.08, T:0.23
Consensus pattern (53 bp):
AATAATATAATGAAGATATAATAAAAATAAAGAATAAACAATATACATAAAAG
Found at i:60417303 original size:20 final size:18
Alignment explanation
Indices: 60417195--60417304 Score: 54
Period size: 17 Copynumber: 6.1 Consensus size: 18
60417185 TAAACAATAT
* *
60417195 ATATAATGAAGATATAATA
1 ATATAATAAAGA-ATAACA
60417214 A-A-AATAAAGAATAAACA
1 ATATAATAAAGAAT-AACA
60417231 ATATACATAAAAGAAT---A
1 ATATA-AT-AAAGAATAACA
* *
60417248 ATATAATGAAGATATAATA
1 ATATAATAAAGA-ATAACA
*
60417267 A-A-AATAAGGAATAAACA
1 ATATAATAAAGAAT-AACA
60417284 ATATACATAAAAGAATAACA
1 ATATA-AT-AAAGAATAACA
60417304 A
1 A
60417305 GCCAATATAT
Statistics
Matches: 70, Mismatches: 7, Indels: 27
0.67 0.07 0.26
Matches are distributed among these distances:
15 4 0.06
16 8 0.11
17 27 0.39
18 4 0.06
19 5 0.07
20 9 0.13
21 13 0.19
ACGTcount: A:0.65, C:0.05, G:0.08, T:0.22
Consensus pattern (18 bp):
ATATAATAAAGAATAACA
Found at i:60420658 original size:17 final size:19
Alignment explanation
Indices: 60420632--60420672 Score: 50
Period size: 17 Copynumber: 2.3 Consensus size: 19
60420622 ACTTCATATA
60420632 TTTTTGTTTAATTT-AAT-
1 TTTTTGTTTAATTTCAATG
* *
60420649 TTTTTTTTTATTTTCAATG
1 TTTTTGTTTAATTTCAATG
60420668 TTTTT
1 TTTTT
60420673 CAGAATTTTT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
17 12 0.60
18 3 0.15
19 5 0.25
ACGTcount: A:0.17, C:0.02, G:0.05, T:0.76
Consensus pattern (19 bp):
TTTTTGTTTAATTTCAATG
Found at i:60425919 original size:74 final size:72
Alignment explanation
Indices: 60425820--60425992 Score: 170
Period size: 72 Copynumber: 2.3 Consensus size: 72
60425810 CGTAATACAC
* * *
60425820 ATTTGTGGCGTTTTATAG-AAGCGCCACTAA-ATACAAAGAACAAAACAGCATCGTTTTGCTAAC
1 ATTTGTGGCGTTTT-TGGAAAACGCCACTAATA-ACAAAG-A-AAAACAGCATCGTTTTACTAAC
*
60425883 ACTTAACACAT
62 ACCTAACACAT
* * ** **
60425894 ATTTGTGGCGTTTTTGGAAAACGCCACTAATAACAACGATAAATGGTGTCGTTTTACTAACACCT
1 ATTTGTGGCGTTTTTGGAAAACGCCACTAATAACAAAGAAAAACAGCATCGTTTTACTAACACCT
60425959 AACACAT
66 AACACAT
* *
60425966 ATTTGCGGCATTTTTGGCTAAAACGCC
1 ATTTGTGGCGTTTTTGG--AAAACGCC
60425993 GGTAATGCAT
Statistics
Matches: 83, Mismatches: 12, Indels: 8
0.81 0.12 0.08
Matches are distributed among these distances:
72 41 0.49
73 3 0.04
74 38 0.46
75 1 0.01
ACGTcount: A:0.34, C:0.20, G:0.17, T:0.29
Consensus pattern (72 bp):
ATTTGTGGCGTTTTTGGAAAACGCCACTAATAACAAAGAAAAACAGCATCGTTTTACTAACACCT
AACACAT
Found at i:60426148 original size:261 final size:262
Alignment explanation
Indices: 60425684--60426191 Score: 786
Period size: 261 Copynumber: 1.9 Consensus size: 262
60425674 AATGGCGCCA
**
60425684 TTTTACTAACACCTAACACATATTTATTGCATTTTTGGCTAAAAAGCCGGTAATGCATAGCCTAT
1 TTTTACTAACACCTAACACATATTTACGGCATTTTTGGCTAAAAAGCCGGTAATGCATAGCCTAT
* * * * ** *
60425749 TGCGGCGTTTTGGACAAAACACCACTAATAACACGGATAAAACGGTGTCATTTTATGGACTCGTA
66 TGCGACGTTTTGGACAAAACACCACTAACAAAAAGGATAAAACGGCATCATTTTATGGACTCATA
* * * * *
60425814 ATACACATTTGTGGCGTTTTATAGAAGCGCCACTAAATACAAAGAACAAAACAGCATCGTTTTGC
131 ATACACATTTGTGGCATTTTATAAAAGCACCACTAAATACAAAGAACAAAACAGCACCATTTTGC
**
60425879 TAACACTTAACACATATTTGTGGCG-TTTTTGG-AAAACGCCACTAATAACAACGATAAATGGTG
196 TAACACTTAACACAT-TTTGCAGCGTTTTTTGGCAAAACGCCACTAATAACAACGATAAATGGTG
60425942 TCG
260 TCG
* *
60425945 TTTTACTAACACCTAACACATATTTGCGGCATTTTTGGCTAAAACGCCGGTAATGCATAGCCTAT
1 TTTTACTAACACCTAACACATATTTACGGCATTTTTGGCTAAAAAGCCGGTAATGCATAGCCTAT
**
60426010 TGCGACGTTTTGGACAAAATGCCACTAACAAAAAGGATAAAACGGCATCATTTTATGGACTCATA
66 TGCGACGTTTTGGACAAAACACCACTAACAAAAAGGATAAAACGGCATCATTTTATGGACTCATA
* *
60426075 ATACACATTTGTGGCATTTTATAAAAGCACCACTAAATACAAAGAATAAAACAGCGCCATTTTGC
131 ATACACATTTGTGGCATTTTATAAAAGCACCACTAAATACAAAGAACAAAACAGCACCATTTTGC
*
60426140 TAACACTTAACACATTTTGCAGCGTTTTTTGGCGAAACGCCACTAATAACAA
196 TAACACTTAACACATTTTGCAGCGTTTTTTGGCAAAACGCCACTAATAACAA
60426192 GGCCAAACGT
Statistics
Matches: 222, Mismatches: 23, Indels: 3
0.90 0.09 0.01
Matches are distributed among these distances:
260 7 0.03
261 197 0.89
262 18 0.08
ACGTcount: A:0.35, C:0.20, G:0.16, T:0.29
Consensus pattern (262 bp):
TTTTACTAACACCTAACACATATTTACGGCATTTTTGGCTAAAAAGCCGGTAATGCATAGCCTAT
TGCGACGTTTTGGACAAAACACCACTAACAAAAAGGATAAAACGGCATCATTTTATGGACTCATA
ATACACATTTGTGGCATTTTATAAAAGCACCACTAAATACAAAGAACAAAACAGCACCATTTTGC
TAACACTTAACACATTTTGCAGCGTTTTTTGGCAAAACGCCACTAATAACAACGATAAATGGTGT
CG
Found at i:60426813 original size:7 final size:7
Alignment explanation
Indices: 60426803--60426908 Score: 63
Period size: 7 Copynumber: 15.0 Consensus size: 7
60426793 AGTTTAAGGT
60426803 TTTAGGG
1 TTTAGGG
60426810 TTTAAGGG
1 TTT-AGGG
**
60426818 TTTACAG
1 TTTAGGG
*
60426825 TTCATGGG
1 TTTA-GGG
*
60426833 -TTAGGA
1 TTTAGGG
60426839 TTTAGGG
1 TTTAGGG
* *
60426846 GTTAGGC
1 TTTAGGG
**
60426853 TTTAGAT
1 TTTAGGG
60426860 TTTAGGG
1 TTTAGGG
60426867 TTTA-GG
1 TTTAGGG
*
60426873 TGTTAAGG
1 T-TTAGGG
60426881 TTTAGGG
1 TTTAGGG
* *
60426888 ATTAGGC
1 TTTAGGG
*
60426895 TTTAGAG
1 TTTAGGG
60426902 TTTAGGG
1 TTTAGGG
60426909 ATTAAGGGCT
Statistics
Matches: 72, Mismatches: 22, Indels: 10
0.69 0.21 0.10
Matches are distributed among these distances:
6 5 0.07
7 56 0.78
8 11 0.15
ACGTcount: A:0.21, C:0.04, G:0.35, T:0.41
Consensus pattern (7 bp):
TTTAGGG
Found at i:60426857 original size:21 final size:21
Alignment explanation
Indices: 60426839--60426912 Score: 89
Period size: 21 Copynumber: 3.5 Consensus size: 21
60426829 TGGGTTAGGA
* *
60426839 TTTAGGGGTTAGGCTTTAGAT
1 TTTAGGGATTAGGCTTTAGAG
*
60426860 TTTAGGGTTTAGG-TGTTA-AGG
1 TTTAGGGATTAGGCT-TTAGA-G
60426881 TTTAGGGATTAGGCTTTAGAG
1 TTTAGGGATTAGGCTTTAGAG
60426902 TTTAGGGATTA
1 TTTAGGGATTA
60426913 AGGGCTGAAA
Statistics
Matches: 46, Mismatches: 3, Indels: 8
0.81 0.05 0.14
Matches are distributed among these distances:
20 2 0.04
21 42 0.91
22 2 0.04
ACGTcount: A:0.22, C:0.03, G:0.34, T:0.42
Consensus pattern (21 bp):
TTTAGGGATTAGGCTTTAGAG
Found at i:60430258 original size:25 final size:25
Alignment explanation
Indices: 60430230--60430278 Score: 73
Period size: 25 Copynumber: 2.0 Consensus size: 25
60430220 GAATAGAATT
60430230 AATAAATAAATAAAATAACA-GAAAC
1 AATAAATAAAT-AAATAACATGAAAC
*
60430255 AATAACTAAATAAATAACATGAAA
1 AATAAATAAATAAATAACATGAAA
60430279 GGGTAAGCGA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 8 0.36
25 14 0.64
ACGTcount: A:0.69, C:0.08, G:0.04, T:0.18
Consensus pattern (25 bp):
AATAAATAAATAAATAACATGAAAC
Found at i:60430342 original size:32 final size:31
Alignment explanation
Indices: 60430306--60430369 Score: 92
Period size: 32 Copynumber: 2.0 Consensus size: 31
60430296 AATCTAACAA
60430306 GCAAAACATTAAATTTAAAATATAAAAGAAAC
1 GCAAAACATTAAATTTAAAATATAAAA-AAAC
* * *
60430338 GCAAATCGTTAAATTTAAAATATATAAAAAC
1 GCAAAACATTAAATTTAAAATATAAAAAAAC
60430369 G
1 G
60430370 AATAAGGACA
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
31 5 0.17
32 24 0.83
ACGTcount: A:0.58, C:0.09, G:0.08, T:0.25
Consensus pattern (31 bp):
GCAAAACATTAAATTTAAAATATAAAAAAAC
Found at i:60430904 original size:11 final size:10
Alignment explanation
Indices: 60430883--60430907 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
60430873 TTGTCCTTTG
60430883 AAAACAAAAA
1 AAAACAAAAA
60430893 AAAACAAAAA
1 AAAACAAAAA
60430903 AAAAC
1 AAAAC
60430908 TCTCCTCCTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.88, C:0.12, G:0.00, T:0.00
Consensus pattern (10 bp):
AAAACAAAAA
Found at i:60431126 original size:16 final size:16
Alignment explanation
Indices: 60431102--60431132 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
60431092 AAGAAATAAA
*
60431102 AAAATAAAAGAAAATC
1 AAAACAAAAGAAAATC
60431118 AAAACAAAAGAAAAT
1 AAAACAAAAGAAAAT
60431133 AGATGAAATA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.77, C:0.06, G:0.06, T:0.10
Consensus pattern (16 bp):
AAAACAAAAGAAAATC
Found at i:60432515 original size:40 final size:40
Alignment explanation
Indices: 60432425--60432532 Score: 135
Period size: 40 Copynumber: 2.7 Consensus size: 40
60432415 TAATTTTTTT
* *
60432425 GCGGTGTTTTTCAAAAAGCACCGCTAATGGTCGACCTATA
1 GCGGTGTTTTTTAAAAAGCACCGCTAATGCTCGACCTATA
* ** * *
60432465 GCAGCATTTTTTAAGAAGCGCCGCTAATGCTCGACCTATA
1 GCGGTGTTTTTTAAAAAGCACCGCTAATGCTCGACCTATA
* *
60432505 GTGGTGTTTTTTAAAAAGCACTGCTAAT
1 GCGGTGTTTTTTAAAAAGCACCGCTAAT
60432533 ACTCTATCTG
Statistics
Matches: 54, Mismatches: 14, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
40 54 1.00
ACGTcount: A:0.28, C:0.20, G:0.21, T:0.31
Consensus pattern (40 bp):
GCGGTGTTTTTTAAAAAGCACCGCTAATGCTCGACCTATA
Found at i:60438732 original size:18 final size:17
Alignment explanation
Indices: 60438709--60438771 Score: 65
Period size: 20 Copynumber: 3.5 Consensus size: 17
60438699 TATTTGTAAC
60438709 ATTATATATATAATTTTT
1 ATTATAT-TATAATTTTT
60438727 ATTATATGTTATATATTTTT
1 ATTATA--TTATA-ATTTTT
*
60438747 ATTATATTACTTA-TTTT
1 ATTATATTA-TAATTTTT
60438764 ATTATATT
1 ATTATATT
60438772 TTTATATGTA
Statistics
Matches: 40, Mismatches: 1, Indels: 9
0.80 0.02 0.18
Matches are distributed among these distances:
17 12 0.30
18 10 0.25
19 5 0.12
20 13 0.32
ACGTcount: A:0.33, C:0.02, G:0.02, T:0.63
Consensus pattern (17 bp):
ATTATATTATAATTTTT
Found at i:60438746 original size:20 final size:21
Alignment explanation
Indices: 60438715--60438753 Score: 71
Period size: 20 Copynumber: 1.9 Consensus size: 21
60438705 TAACATTATA
60438715 TATATAATTTTTATTATATGT
1 TATATAATTTTTATTATATGT
60438736 TATAT-ATTTTTATTATAT
1 TATATAATTTTTATTATAT
60438754 TACTTATTTT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 13 0.72
21 5 0.28
ACGTcount: A:0.33, C:0.00, G:0.03, T:0.64
Consensus pattern (21 bp):
TATATAATTTTTATTATATGT
Found at i:60441914 original size:20 final size:20
Alignment explanation
Indices: 60441891--60441932 Score: 68
Period size: 20 Copynumber: 2.1 Consensus size: 20
60441881 GAAAAATTAG
60441891 AAAATAAAAATTA-AACTAAA
1 AAAATAAAAATTATAA-TAAA
60441911 AAAATAAAAATTATAATAAA
1 AAAATAAAAATTATAATAAA
60441931 AA
1 AA
60441933 TAAAAATGGA
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
20 19 0.90
21 2 0.10
ACGTcount: A:0.76, C:0.02, G:0.00, T:0.21
Consensus pattern (20 bp):
AAAATAAAAATTATAATAAA
Found at i:60441945 original size:19 final size:18
Alignment explanation
Indices: 60441910--60441945 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
60441900 ATTAAACTAA
*
60441910 AAAAATAAAAATTATAAT
1 AAAAATAAAAATGATAAT
60441928 AAAAATAAAAATGGATAA
1 AAAAATAAAAAT-GATAA
60441946 ATTAATAAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 12 0.75
19 4 0.25
ACGTcount: A:0.72, C:0.00, G:0.06, T:0.22
Consensus pattern (18 bp):
AAAAATAAAAATGATAAT
Found at i:60447378 original size:40 final size:40
Alignment explanation
Indices: 60447310--60447386 Score: 109
Period size: 40 Copynumber: 1.9 Consensus size: 40
60447300 ACTGTACCAT
* * * *
60447310 TTGGTGTGTAGGGTTGGATGGGTTGATTTTATCCCCATAC
1 TTGGTGTGTAAGGCTGGATAGGTCGATTTTATCCCCATAC
*
60447350 TTGGTGTGTAAGGCTGGGTAGGTCGATTTTATCCCCA
1 TTGGTGTGTAAGGCTGGATAGGTCGATTTTATCCCCA
60447387 CATGGTGTGT
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
40 32 1.00
ACGTcount: A:0.16, C:0.14, G:0.32, T:0.38
Consensus pattern (40 bp):
TTGGTGTGTAAGGCTGGATAGGTCGATTTTATCCCCATAC
Found at i:60456881 original size:21 final size:22
Alignment explanation
Indices: 60456855--60456895 Score: 66
Period size: 21 Copynumber: 1.9 Consensus size: 22
60456845 ACAAAAAAAT
60456855 TGTTATTTT-TTGTTATTTTAA
1 TGTTATTTTCTTGTTATTTTAA
*
60456876 TGTTATTTTCTTGTTGTTTT
1 TGTTATTTTCTTGTTATTTT
60456896 CTTTTTATTT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 9 0.50
22 9 0.50
ACGTcount: A:0.12, C:0.02, G:0.12, T:0.73
Consensus pattern (22 bp):
TGTTATTTTCTTGTTATTTTAA
Found at i:60456890 original size:11 final size:11
Alignment explanation
Indices: 60456854--60456906 Score: 63
Period size: 11 Copynumber: 4.9 Consensus size: 11
60456844 GACAAAAAAA
60456854 TTGTTATTTT-
1 TTGTTATTTTC
*
60456864 TTGTTATTTTA
1 TTGTTATTTTC
*
60456875 ATGTTATTTTC
1 TTGTTATTTTC
*
60456886 TTGTTGTTTTC
1 TTGTTATTTTC
*
60456897 TTTTTATTTT
1 TTGTTATTTT
60456907 ATTACCATTT
Statistics
Matches: 36, Mismatches: 6, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
10 10 0.28
11 26 0.72
ACGTcount: A:0.11, C:0.04, G:0.09, T:0.75
Consensus pattern (11 bp):
TTGTTATTTTC
Found at i:60459009 original size:14 final size:15
Alignment explanation
Indices: 60458979--60459011 Score: 50
Period size: 14 Copynumber: 2.3 Consensus size: 15
60458969 TATCTTTTTT
60458979 TTATAAAGTTATATA
1 TTATAAAGTTATATA
*
60458994 TTATAAA-TTTTATA
1 TTATAAAGTTATATA
60459008 TTAT
1 TTAT
60459012 TTTTTACTTA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 10 0.59
15 7 0.41
ACGTcount: A:0.42, C:0.00, G:0.03, T:0.55
Consensus pattern (15 bp):
TTATAAAGTTATATA
Found at i:60460142 original size:128 final size:129
Alignment explanation
Indices: 60459975--60460214 Score: 385
Period size: 128 Copynumber: 1.9 Consensus size: 129
60459965 AATATAAAAG
*
60459975 TTATATAATCATATTAATATTTAAGACATTAGAAATTTTAAGCTTTTAACATTATTATTTCAACC
1 TTATATAATCATATTAATATTCAAGACATTAGAAATTTTAAGCTTTTAACATTATTATTTCAACC
60460040 AAAGCTTTAACTAA-TTTTTATATAAATATATTATCTATAAAACTCTCGTCTCCCGATTGAGTT
66 AAAGCTTTAACTAATTTTTTATATAAATATATTATCTATAAAACTCTCGTCTCCCGATTGAGTT
* * * * *
60460103 TTATATGATCATATTTGA-ATTCAAGACATTAGGATTTTTAAGTTTTTAACATTATTATTTCAAC
1 TTATATAATCATA-TTAATATTCAAGACATTAGAAATTTTAAGCTTTTAACATTATTATTTCAAC
* *
60460167 CAAAGCTTTACCTAATTTTTTATATAAATATATTATCTATATAACTCT
65 CAAAGCTTTAACTAATTTTTTATATAAATATATTATCTATAAAACTCT
60460215 TGATTGAGTT
Statistics
Matches: 102, Mismatches: 8, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
128 68 0.67
129 34 0.33
ACGTcount: A:0.37, C:0.12, G:0.06, T:0.45
Consensus pattern (129 bp):
TTATATAATCATATTAATATTCAAGACATTAGAAATTTTAAGCTTTTAACATTATTATTTCAACC
AAAGCTTTAACTAATTTTTTATATAAATATATTATCTATAAAACTCTCGTCTCCCGATTGAGTT
Found at i:60462583 original size:19 final size:20
Alignment explanation
Indices: 60462549--60462589 Score: 66
Period size: 19 Copynumber: 2.1 Consensus size: 20
60462539 AGTTTGTTTA
60462549 AAAATAAAATTTTAAAAAAT
1 AAAATAAAATTTTAAAAAAT
*
60462569 AAAATATAA-TTTAAAAAAT
1 AAAATAAAATTTTAAAAAAT
60462588 AA
1 AA
60462590 TTTGATTCAT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
19 12 0.60
20 8 0.40
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (20 bp):
AAAATAAAATTTTAAAAAAT
Found at i:60463738 original size:37 final size:37
Alignment explanation
Indices: 60463688--60463761 Score: 121
Period size: 37 Copynumber: 2.0 Consensus size: 37
60463678 TTGAATTCGA
* *
60463688 AAGATTATAATAGCCACTCAAAATGGTCTAACAGAAT
1 AAGATTACAATAGCCACTCAAAATGGCCTAACAGAAT
*
60463725 AAGATTACAATAGCCACTCAAAATGGCCTGACAGAAT
1 AAGATTACAATAGCCACTCAAAATGGCCTAACAGAAT
60463762 TATCGGAGTT
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
37 34 1.00
ACGTcount: A:0.45, C:0.19, G:0.15, T:0.22
Consensus pattern (37 bp):
AAGATTACAATAGCCACTCAAAATGGCCTAACAGAAT
Found at i:60467437 original size:7 final size:7
Alignment explanation
Indices: 60467422--60467542 Score: 54
Period size: 7 Copynumber: 17.1 Consensus size: 7
60467412 TGGATTTTAA
*
60467422 AATAGAT
1 AATATAT
60467429 AATATAT
1 AATATAT
60467436 AATAGTAT
1 AATA-TAT
* *
60467444 ATAAAAAT
1 A-ATATAT
60467452 AATA-AT
1 AATATAT
*
60467458 AAATGAAAT
1 -AAT-ATAT
*
60467467 AATTTAT
1 AATATAT
60467474 AATATAT
1 AATATAT
60467481 AATATA-
1 AATATAT
* *
60467487 AAAATGT
1 AATATAT
* *
60467494 AAGTTTTT
1 AA-TATAT
60467502 AA-A-AT
1 AATATAT
*
60467507 AATGTAT
1 AATATAT
60467514 AATATA-
1 AATATAT
*
60467520 AATAAAT
1 AATATAT
60467527 AAATATAT
1 -AATATAT
60467535 AATATAT
1 AATATAT
60467542 A
1 A
60467543 TAAGTTAAAA
Statistics
Matches: 85, Mismatches: 18, Indels: 22
0.68 0.14 0.18
Matches are distributed among these distances:
5 3 0.04
6 11 0.13
7 46 0.54
8 21 0.25
9 4 0.05
ACGTcount: A:0.59, C:0.00, G:0.05, T:0.36
Consensus pattern (7 bp):
AATATAT
Found at i:60467555 original size:21 final size:21
Alignment explanation
Indices: 60467503--60467558 Score: 62
Period size: 21 Copynumber: 2.7 Consensus size: 21
60467493 TAAGTTTTTA
*
60467503 AAAT-AATGTATAATATAAAT
1 AAATAAATATATAATATAAAT
*
60467523 AAATAAATATATAATATATAT
1 AAATAAATATATAATATAAAT
*
60467544 AAGTTAAA-ATATAAT
1 AA-ATAAATATATAAT
60467559 GCATAATAAT
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
20 4 0.13
21 23 0.74
22 4 0.13
ACGTcount: A:0.61, C:0.00, G:0.04, T:0.36
Consensus pattern (21 bp):
AAATAAATATATAATATAAAT
Found at i:60468935 original size:30 final size:30
Alignment explanation
Indices: 60468899--60469007 Score: 182
Period size: 30 Copynumber: 3.6 Consensus size: 30
60468889 GGTGTGTGTA
*
60468899 TAACGGGTCTGGGCTATTTTGGGTTTGCTG
1 TAACGGGTCTGAGCTATTTTGGGTTTGCTG
*
60468929 TAACGGGTCTGAGCTATTTTGGGTTTGTTG
1 TAACGGGTCTGAGCTATTTTGGGTTTGCTG
60468959 TAACGGGTCTGAGCTATTTTGGGTTTGCTG
1 TAACGGGTCTGAGCTATTTTGGGTTTGCTG
* *
60468989 TAACGGGTCTAAGGTATTT
1 TAACGGGTCTGAGCTATTT
60469008 GGGCTTGTGT
Statistics
Matches: 74, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 74 1.00
ACGTcount: A:0.15, C:0.12, G:0.33, T:0.40
Consensus pattern (30 bp):
TAACGGGTCTGAGCTATTTTGGGTTTGCTG
Found at i:60468976 original size:60 final size:60
Alignment explanation
Indices: 60468885--60469017 Score: 196
Period size: 60 Copynumber: 2.2 Consensus size: 60
60468875 AACCGGTCTG
* * *
60468885 TTTGGGTGTGTGTATAACGGGTCTGGGCTATTTTGGGTTTGCTGTAACGGGTCTGAGCTA
1 TTTGGGTTTGTGTATAACGGGTCTGAGCTATTTTGGGTTTGCTGTAACGGGTCTAAGCTA
* *
60468945 TTTTGGGTTTGT-TGTAACGGGTCTGAGCTATTTTGGGTTTGCTGTAACGGGTCTAAGGTA
1 -TTTGGGTTTGTGTATAACGGGTCTGAGCTATTTTGGGTTTGCTGTAACGGGTCTAAGCTA
*
60469005 TTTGGGCTTGTGT
1 TTTGGGTTTGTGT
60469018 TTGGGCTCTT
Statistics
Matches: 65, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
59 10 0.15
60 45 0.69
61 10 0.15
ACGTcount: A:0.13, C:0.11, G:0.35, T:0.41
Consensus pattern (60 bp):
TTTGGGTTTGTGTATAACGGGTCTGAGCTATTTTGGGTTTGCTGTAACGGGTCTAAGCTA
Found at i:60469713 original size:118 final size:118
Alignment explanation
Indices: 60469531--60469783 Score: 470
Period size: 118 Copynumber: 2.1 Consensus size: 118
60469521 GTAAGCACAA
*
60469531 AGATGCTAAATCATCTTGAATCTGCTTCAGTATAAACATCTGAAGGTGAGATCTGCTATGTATCT
1 AGATGCCAAATCATCTTGAATCTGCTTCAGTATAAACATCTGAAGGTGAGATCTGCTATGTATCT
*
60469596 GCTCCCCGTTGAAGTGGAGATGCCAGACTTCGATTTGCTCTCTGACAATACAG
66 GCTCACCGTTGAAGTGGAGATGCCAGACTTCGATTTGCTCTCTGACAATACAG
*
60469649 AGATGCCAAATCATCTTGGATCTGCTTCAGTATAAACATCTGAAGGTGAGATCTGCTATGTATCT
1 AGATGCCAAATCATCTTGAATCTGCTTCAGTATAAACATCTGAAGGTGAGATCTGCTATGTATCT
*
60469714 GCTCACCGTTGAAGTGGAGATGCCAGACTTCGATTTGCTCTCTGCCAATACAG
66 GCTCACCGTTGAAGTGGAGATGCCAGACTTCGATTTGCTCTCTGACAATACAG
60469767 AGATGCCAAATCATCTT
1 AGATGCCAAATCATCTT
60469784 AGATTTGTTT
Statistics
Matches: 131, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
118 131 1.00
ACGTcount: A:0.27, C:0.22, G:0.21, T:0.30
Consensus pattern (118 bp):
AGATGCCAAATCATCTTGAATCTGCTTCAGTATAAACATCTGAAGGTGAGATCTGCTATGTATCT
GCTCACCGTTGAAGTGGAGATGCCAGACTTCGATTTGCTCTCTGACAATACAG
Found at i:60469826 original size:118 final size:118
Alignment explanation
Indices: 60469531--60469827 Score: 357
Period size: 118 Copynumber: 2.5 Consensus size: 118
60469521 GTAAGCACAA
* * ** * ***
60469531 AGATGCTAAATCATCTT-GAATCTGCTTCAGTATAAACATCTGAAGGTGAGATCTGCTATGTATC
1 AGATGCCAAATCATCTTAG-ATCTGCTTCAGTATAAACATCTGAAAGCCAAATAAACTATGTATC
*
60469595 TGCTCCCCGTTGAAGTGGAGATGCCAGACTTCGATTTGCTCTCTGACAATACAG
65 TGCTCACCGTTGAAGTGGAGATGCCAGACTTCGATTTGCTCTCTGACAATACAG
* * ** * ***
60469649 AGATGCCAAATCATCTTGGATCTGCTTCAGTATAAACATCTGAAGGTGAGATCTGCTATGTATCT
1 AGATGCCAAATCATCTTAGATCTGCTTCAGTATAAACATCTGAAAGCCAAATAAACTATGTATCT
*
60469714 GCTCACCGTTGAAGTGGAGATGCCAGACTTCGATTTGCTCTCTGCCAATACAG
66 GCTCACCGTTGAAGTGGAGATGCCAGACTTCGATTTGCTCTCTGACAATACAG
* * *
60469767 AGATGCCAAATCATCTTAGATTTGTTTCA-TCGTAAACA-CGTGAAAGCCAAATAAACTATGT
1 AGATGCCAAATCATCTTAGATCTGCTTCAGT-ATAAACATC-TGAAAGCCAAATAAACTATGT
60469828 CTCCGATTTG
Statistics
Matches: 162, Mismatches: 14, Indels: 6
0.89 0.08 0.03
Matches are distributed among these distances:
117 2 0.01
118 159 0.98
119 1 0.01
ACGTcount: A:0.29, C:0.21, G:0.20, T:0.30
Consensus pattern (118 bp):
AGATGCCAAATCATCTTAGATCTGCTTCAGTATAAACATCTGAAAGCCAAATAAACTATGTATCT
GCTCACCGTTGAAGTGGAGATGCCAGACTTCGATTTGCTCTCTGACAATACAG
Found at i:60469837 original size:205 final size:205
Alignment explanation
Indices: 60469650--60470118 Score: 692
Period size: 205 Copynumber: 2.3 Consensus size: 205
60469640 ACAATACAGA
60469650 GATGCCAAATCATCTTGGATCTGCTTCAGTATAAACATCTGAAGGTGAGATCTGCTATGTATCTG
1 GATGCCAAATCATCTTGGATCTGCTTCAGTATAAACATCTGAAGGTGAGATCTGCTATGTATCTG
* * *
60469715 CTCACCGTTGAAGTGGAGATGCCAGACTTCGATTTGCTCTCTGCCAATACAGAGATGCCAAATCA
66 CTCACCATTGAAATGGAGATGCCAGACTTCGATTTGCTCTCTGACAATACAGAGATGCCAAATCA
*
60469780 TCTTAGATTTGTTTCA-TCGTAAACACGTGAAAGCCAAATAAACTATGTCTCCGATTTGTTCTTT
131 TCTTAGATTTGTTTCAGT-GTAAACACGTGAAAGCCAAATAAACTATGTCTCCGATTTGTTCTCT
60469844 GTAAACACAAG
195 GTAAACACAAG
* * * * * * *
60469855 GATGCCAGATCATCTTGGATCTTGCTTTAGTCTAATCGTCTGAAGGTCAGAT-TGCTATGTGTCT
1 GATGCCAAATCATCTTGGATC-TGCTTCAGTATAAACATCTGAAGGTGAGATCTGCTATGTATCT
*
60469919 GCTCTCCATTGAAATGGAGATGCCAGACTTCGATTTGCTCTCTGACAATACAGAGATGCCAAATC
65 GCTCACCATTGAAATGGAGATGCCAGACTTCGATTTGCTCTCTGACAATACAGAGATGCCAAATC
* * * *
60469984 ATCTTAGATTTGTTTTAGTGTAAACACGTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTC-CT
130 ATCTTAGATTTGTTTCAGTGTAAACACGTGAAAGCCAAATAAACTATGTCTCCGATTTGTTCTCT
*
60470048 CGTAAGCACAAG
195 -GTAAACACAAG
* * * * *
60470060 GATACCAAACCATCCTGGATCTGCTTCAGCATAAACATCTGAAGATGAGATCTGCTATG
1 GATGCCAAATCATCTTGGATCTGCTTCAGTATAAACATCTGAAGGTGAGATCTGCTATG
60470119 CTGCGGCCTA
Statistics
Matches: 232, Mismatches: 28, Indels: 8
0.87 0.10 0.03
Matches are distributed among these distances:
204 24 0.10
205 182 0.78
206 26 0.11
ACGTcount: A:0.28, C:0.21, G:0.20, T:0.31
Consensus pattern (205 bp):
GATGCCAAATCATCTTGGATCTGCTTCAGTATAAACATCTGAAGGTGAGATCTGCTATGTATCTG
CTCACCATTGAAATGGAGATGCCAGACTTCGATTTGCTCTCTGACAATACAGAGATGCCAAATCA
TCTTAGATTTGTTTCAGTGTAAACACGTGAAAGCCAAATAAACTATGTCTCCGATTTGTTCTCTG
TAAACACAAG
Found at i:60469939 original size:323 final size:324
Alignment explanation
Indices: 60469331--60469988 Score: 998
Period size: 323 Copynumber: 2.0 Consensus size: 324
60469321 ATAAGAGTAT
** * * *
60469331 CAAATCATCTTGGATCTTGCTTCAGTGAAATTATCTGAAGGTGAGGTCTGCTATGTATTTGCTCC
1 CAAATCATCTTGGATCTTGCTTCAGTGAAAACATCTGAAGGTGAGATCTGCTATGTATCTGCTCA
* *
60469396 CCGTTGAAGTGAAGATGCTAGACTTCGATTTGCTCTCTGATAATACAGAGATGCCAAATCATCCT
66 CCGTTGAAGTGAAGATGCCAGACTTCGATTTGCTCTCTGACAATACAGAGATGCCAAATCATCCT
* * * *
60469461 AGATTTGCTTCATCGTAAACACGTGAAAGCCAAATCAGCTATGTCTTCGATTCGCTCCTTGTAAG
131 AGATTTGCTTCATCGTAAACACGTGAAAGCCAAATAAACTATGTCTCCGATTCGCTCCTTGTAAA
* *
60469526 CACAAAGATGCTAAATCATCTTGAATCTGCTTCAGTATAAACATCTGAAGGTGAGATCTGCTATG
196 CACAAAGATGCCAAATCATCTTGAATCTGCTTCAGTATAAACATCTGAAGGTCAGATCTGCTATG
* *
60469591 TATCTGCTCCCCGTTGAAGTGGAGATGCCAGACTTCGATTTGCTCTCTGACAATACAGAGATGC
261 TATCTGCTCCCCATTGAAATGGAGATGCCAGACTTCGATTTGCTCTCTGACAATACAGAGATGC
60469655 CAAATCATCTTGGATC-TGCTTCAGT-ATAAACATCTGAAGGTGAGATCTGCTATGTATCTGCTC
1 CAAATCATCTTGGATCTTGCTTCAGTGA-AAACATCTGAAGGTGAGATCTGCTATGTATCTGCTC
* * *
60469718 ACCGTTGAAGTGGAGATGCCAGACTTCGATTTGCTCTCTGCCAATACAGAGATGCCAAATCATCT
65 ACCGTTGAAGTGAAGATGCCAGACTTCGATTTGCTCTCTGACAATACAGAGATGCCAAATCATCC
* * * *
60469783 TAGATTTGTTTCATCGTAAACACGTGAAAGCCAAATAAACTATGTCTCCGATTTGTTCTTTGTAA
130 TAGATTTGCTTCATCGTAAACACGTGAAAGCCAAATAAACTATGTCTCCGATTCGCTCCTTGTAA
* * * * * * *
60469848 ACACAAGGATGCCAGATCATCTTGGATCTTGCTTTAGTCTAATCGTCTGAAGGTCAGAT-TGCTA
195 ACACAAAGATGCCAAATCATCTTGAATC-TGCTTCAGTATAAACATCTGAAGGTCAGATCTGCTA
* *
60469912 TGTGTCTGCTCTCCATTGAAATGGAGATGCCAGACTTCGATTTGCTCTCTGACAATACAGAGATG
259 TGTATCTGCTCCCCATTGAAATGGAGATGCCAGACTTCGATTTGCTCTCTGACAATACAGAGATG
60469977 C
324 C
60469978 CAAATCATCTT
1 CAAATCATCTT
60469989 AGATTTGTTT
Statistics
Matches: 301, Mismatches: 31, Indels: 5
0.89 0.09 0.01
Matches are distributed among these distances:
322 1 0.00
323 259 0.86
324 41 0.14
ACGTcount: A:0.28, C:0.21, G:0.20, T:0.31
Consensus pattern (324 bp):
CAAATCATCTTGGATCTTGCTTCAGTGAAAACATCTGAAGGTGAGATCTGCTATGTATCTGCTCA
CCGTTGAAGTGAAGATGCCAGACTTCGATTTGCTCTCTGACAATACAGAGATGCCAAATCATCCT
AGATTTGCTTCATCGTAAACACGTGAAAGCCAAATAAACTATGTCTCCGATTCGCTCCTTGTAAA
CACAAAGATGCCAAATCATCTTGAATCTGCTTCAGTATAAACATCTGAAGGTCAGATCTGCTATG
TATCTGCTCCCCATTGAAATGGAGATGCCAGACTTCGATTTGCTCTCTGACAATACAGAGATGC
Found at i:60478141 original size:15 final size:15
Alignment explanation
Indices: 60478099--60478148 Score: 52
Period size: 15 Copynumber: 3.5 Consensus size: 15
60478089 GGTTCTTTGA
* *
60478099 ATGCAAACG-ATGTG
1 ATGCAAATGCATGAG
60478113 ATG-AAATGCTATGAG
1 ATGCAAATGC-ATGAG
60478128 ATGCAAATGCATGA-
1 ATGCAAATGCATGAG
60478142 ATGCAAA
1 ATGCAAA
60478149 AAGGATATCG
Statistics
Matches: 31, Mismatches: 2, Indels: 6
0.79 0.05 0.15
Matches are distributed among these distances:
13 4 0.13
14 10 0.32
15 11 0.35
16 6 0.19
ACGTcount: A:0.42, C:0.12, G:0.24, T:0.22
Consensus pattern (15 bp):
ATGCAAATGCATGAG
Found at i:60478147 original size:14 final size:16
Alignment explanation
Indices: 60478112--60478148 Score: 53
Period size: 15 Copynumber: 2.5 Consensus size: 16
60478102 CAAACGATGT
60478112 GATG-AAATGCTATGA
1 GATGCAAATGCTATGA
60478127 GATGCAAATGC-ATGA
1 GATGCAAATGCTATGA
60478142 -ATGCAAA
1 GATGCAAA
60478149 AAGGATATCG
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
14 7 0.33
15 8 0.38
16 6 0.29
ACGTcount: A:0.43, C:0.11, G:0.24, T:0.22
Consensus pattern (16 bp):
GATGCAAATGCTATGA
Found at i:60479043 original size:37 final size:37
Alignment explanation
Indices: 60478982--60479127 Score: 242
Period size: 37 Copynumber: 4.0 Consensus size: 37
60478972 TACGTATGAT
* *
60478982 CACTTATCAC-TTG-TCCCTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
*
60479017 CACCTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
60479054 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
*
60479091 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
60479128 TAAAGCTATC
Statistics
Matches: 104, Mismatches: 5, Indels: 2
0.94 0.05 0.02
Matches are distributed among these distances:
35 9 0.09
36 3 0.03
37 92 0.88
ACGTcount: A:0.25, C:0.22, G:0.16, T:0.37
Consensus pattern (37 bp):
CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
Found at i:60479144 original size:46 final size:46
Alignment explanation
Indices: 60479091--60479359 Score: 340
Period size: 46 Copynumber: 5.6 Consensus size: 46
60479081 TAAGTGTAGC
* **
60479091 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGCTAAAGCTAT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
* *
60479137 CACTTATCACTTTGTCTCTTGATCAGATAAGTATAGCCGAAGCTAT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
60479183 CACTTATCACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
1 CACTTATCAC---T---TTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
*
60479235 CACTTATCACTTTGTCACTTGATCAGATAAGTATAGCCGAAGCTAT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
* ** *
60479281 TACTTATCACTTTCCACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTAC
1 CACTTATCAC--T----TTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
60479333 CACTTATCACTTTGTCACTTGATCAGA
1 CACTTATCACTTTGTCACTTGATCAGA
60479360 AGTACTCAAA
Statistics
Matches: 199, Mismatches: 12, Indels: 24
0.85 0.05 0.10
Matches are distributed among these distances:
46 112 0.56
48 1 0.01
49 2 0.01
50 1 0.01
52 83 0.42
ACGTcount: A:0.28, C:0.22, G:0.14, T:0.35
Consensus pattern (46 bp):
CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
Found at i:60479210 original size:52 final size:52
Alignment explanation
Indices: 60479134--60479353 Score: 299
Period size: 52 Copynumber: 4.3 Consensus size: 52
60479124 TAGCTAAAGC
* *
60479134 TATCACTTATCACTTTGTCTCTTGATCAGATAAGTATAGCCGAAGCTATCACT
1 TATCACTTTTCAC-TTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACT
*
60479187 TATCACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTATCACT
1 TATCACTTTTCACTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACT
*
60479239 TATCAC---T---TTGTCACTTGATCAGATAAGTATAGCCGAAGCTATTACT
1 TATCACTTTTCACTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACT
* * ** *
60479285 TATCACTTTCCACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTACCACT
1 TATCACTTTTCACTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACT
60479337 TATCACTTTGTCACTTG
1 TATCACTTT-TCACTTG
60479354 ATCAGAAGTA
Statistics
Matches: 148, Mismatches: 12, Indels: 14
0.85 0.07 0.08
Matches are distributed among these distances:
46 43 0.29
49 1 0.01
52 86 0.58
53 18 0.12
ACGTcount: A:0.28, C:0.23, G:0.14, T:0.35
Consensus pattern (52 bp):
TATCACTTTTCACTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACT
Found at i:60479256 original size:98 final size:98
Alignment explanation
Indices: 60479091--60479359 Score: 457
Period size: 98 Copynumber: 2.7 Consensus size: 98
60479081 TAAGTGTAGC
* * *
60479091 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGCTAAAGCTATCACTTATCACTTTGTCTCT
1 CACTTTTCAC-TTGTCACTTGATCAGATAAGTGTAGCTAAAGCTATCACTTATCACTTTGTCACT
60479156 TGATCAGATAAGTATAGCCGAAGCTATCACTTAT
65 TGATCAGATAAGTATAGCCGAAGCTATCACTTAT
**
60479190 CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTATCACTTATCACTTTGTCACTT
1 CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTATCACTTATCACTTTGTCACTT
*
60479255 GATCAGATAAGTATAGCCGAAGCTATTACTTAT
66 GATCAGATAAGTATAGCCGAAGCTATCACTTAT
* *
60479288 CACTTTCCACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTTGTCACTT
1 CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTATCACTTATCACTTTGTCACTT
60479353 GATCAGA
66 GATCAGA
60479360 AGTACTCAAA
Statistics
Matches: 160, Mismatches: 10, Indels: 1
0.94 0.06 0.01
Matches are distributed among these distances:
98 151 0.94
99 9 0.06
ACGTcount: A:0.28, C:0.22, G:0.14, T:0.35
Consensus pattern (98 bp):
CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTATCACTTATCACTTTGTCACTT
GATCAGATAAGTATAGCCGAAGCTATCACTTAT
Found at i:60485088 original size:7 final size:7
Alignment explanation
Indices: 60485073--60485222 Score: 57
Period size: 7 Copynumber: 21.4 Consensus size: 7
60485063 TGGATTTTAA
*
60485073 AATAGAT
1 AATATAT
60485080 AATATAT
1 AATATAT
60485087 AATAGTAT
1 AATA-TAT
* *
60485095 ATAAAAAT
1 A-ATATAT
60485103 AATA-AT
1 AATATAT
*
60485109 AAATGAAAT
1 -AAT-ATAT
*
60485118 AATTTAT
1 AATATAT
60485125 AATATAT
1 AATATAT
60485132 AATATA-
1 AATATAT
* *
60485138 AAAATGT
1 AATATAT
* *
60485145 AAGTTTTT
1 AA-TATAT
60485153 AA-A-AT
1 AATATAT
*
60485158 AATGTAT
1 AATATAT
60485165 AATATA-
1 AATATAT
*
60485171 AATAAAT
1 AATATAT
60485178 AAATATAT
1 -AATATAT
60485186 AAGATATAT
1 -A-ATATAT
60485195 AAGT-TA-
1 AA-TATAT
60485201 AA-ATAT
1 AATATAT
60485207 AATATAT
1 AATATAT
60485214 AATA-AT
1 AATATAT
60485220 AAT
1 AAT
60485223 TTACAAATTT
Statistics
Matches: 109, Mismatches: 18, Indels: 33
0.68 0.11 0.21
Matches are distributed among these distances:
5 5 0.05
6 20 0.18
7 49 0.45
8 25 0.23
9 10 0.09
ACGTcount: A:0.59, C:0.00, G:0.05, T:0.36
Consensus pattern (7 bp):
AATATAT
Found at i:60485187 original size:28 final size:29
Alignment explanation
Indices: 60485156--60485216 Score: 67
Period size: 28 Copynumber: 2.2 Consensus size: 29
60485146 AGTTTTTAAA
60485156 ATAATGTATAATATAA-AT-AAATA-AATAT
1 ATAATG-AT-ATATAAGATAAAATATAATAT
*
60485184 ATAA-GATATATAAGTTAAAATATAATAT
1 ATAATGATATATAAGATAAAATATAATAT
60485212 ATAAT
1 ATAAT
60485217 AATAATTTAC
Statistics
Matches: 28, Mismatches: 1, Indels: 7
0.78 0.03 0.19
Matches are distributed among these distances:
25 6 0.21
26 3 0.11
27 6 0.21
28 13 0.46
ACGTcount: A:0.59, C:0.00, G:0.05, T:0.36
Consensus pattern (29 bp):
ATAATGATATATAAGATAAAATATAATAT
Found at i:60486575 original size:30 final size:30
Alignment explanation
Indices: 60486535--60486613 Score: 113
Period size: 30 Copynumber: 2.6 Consensus size: 30
60486525 GGTGTGTGTA
*
60486535 TAACGGGTCTGAGCTATTTTGAGTTTGTTG
1 TAACGGGTCTGAGCTATTTTGAGTTTGCTG
* *
60486565 TAACGAGTCTGAGCTATTTTGGGTTTGCTG
1 TAACGGGTCTGAGCTATTTTGAGTTTGCTG
* *
60486595 TAACGGGTCTAAGGTATTT
1 TAACGGGTCTGAGCTATTT
60486614 GGGCTTGTAT
Statistics
Matches: 43, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
30 43 1.00
ACGTcount: A:0.19, C:0.11, G:0.29, T:0.41
Consensus pattern (30 bp):
TAACGGGTCTGAGCTATTTTGAGTTTGCTG
Found at i:60488186 original size:31 final size:31
Alignment explanation
Indices: 60488165--60488229 Score: 96
Period size: 31 Copynumber: 2.1 Consensus size: 31
60488155 TATATTTTTT
*
60488165 AAAAGTTGG-AGAAAAAAATTTTAGGTCCTTA
1 AAAAGTTGGTA-AAAAAAATTTTAGATCCTTA
*
60488196 AAAAGTTGGTAAAAAAAATTTTAGACCCTTA
1 AAAAGTTGGTAAAAAAAATTTTAGATCCTTA
60488227 AAA
1 AAA
60488230 CCTAAAAAAA
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
31 30 0.97
32 1 0.03
ACGTcount: A:0.49, C:0.08, G:0.15, T:0.28
Consensus pattern (31 bp):
AAAAGTTGGTAAAAAAAATTTTAGATCCTTA
Found at i:60490116 original size:29 final size:29
Alignment explanation
Indices: 60490066--60490121 Score: 69
Period size: 29 Copynumber: 1.9 Consensus size: 29
60490056 GTTCAATATG
* *
60490066 TAATGTTATATATGAACTTTTATTTTGTA
1 TAATGTTATATATGAACATTTAATTTGTA
*
60490095 TAATTTTATATATG-ACAATTTAATTTG
1 TAATGTTATATATGAAC-ATTTAATTTG
60490122 ATTTTCACAA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
28 2 0.09
29 21 0.91
ACGTcount: A:0.34, C:0.04, G:0.09, T:0.54
Consensus pattern (29 bp):
TAATGTTATATATGAACATTTAATTTGTA
Found at i:60491783 original size:207 final size:204
Alignment explanation
Indices: 60491422--60491826 Score: 444
Period size: 207 Copynumber: 2.0 Consensus size: 204
60491412 TGTATTCAAG
* *** * ** * *
60491422 AAAAGAAACTTATAAACTTGTGTTGATAGCTTGGCGGTGAAGGATGCCATTAAAGGATGATGTGG
1 AAAACAAACTTATAAACTTGTGTTGATAGCTTGAAAGTAAAGGACACCATTAAAAGATGATGCGG
* * * * * *
60491487 GCCTCCAAAGATAAGAAGAGAGGTTGTGAGGTGTGGAAAGTGGTCCTTTGAGGCGCCTCCAACGT
66 GCCTACAAAGATAAGAAAAGAGATAGTGAGGTGTGCAAAGTGGTCCCTTGAGGCGCCTCCAACGT
* ***
60491552 CTTAGTCAATGTTTTAGGTTCAATCAATCTGACAACTTGATTTTGTAAATTACAAAGAAATTTAT
131 CTTAATCAATGTTTTAGGTTCAATCAA--T-ACAACTTGATCACGTAAATTACAAAGAAATTTAT
60491617 TTCTTATGCAAA
193 TTCTTATGCAAA
*
60491629 AAAACAAACTTATAAACTTGTGTTGATAG-TATGAAAGTAAATGACACCATTAAAAGATGATGCG
1 AAAACAAACTTATAAACTTGTGTTGATAGCT-TGAAAGTAAAGGACACCATTAAAAGATGATGCG
* * *
60491693 GG-CTGACAAAGATAATAAAAGAGATAGTG-GGATGT-CAAAGGTGGTCCCTTGATGCGCCTTCA
65 GGCCT-ACAAAGATAAGAAAAGAGATAGTGAGG-TGTGCAAA-GTGGTCCCTTGAGGCGCCTCCA
* * * *
60491755 ACG-CGTTAATTAATGTTTT-GGATTCAATCAATACAATTTGATCACGTAAATTATAAAGATATT
127 ACGTC-TTAATCAATGTTTTAGG-TTCAATCAATACAACTTGATCACGTAAATTACAAAGAAATT
60491818 TATTTCTTA
190 TATTTCTTA
60491827 AATTATTTGC
Statistics
Matches: 165, Mismatches: 27, Indels: 15
0.80 0.13 0.07
Matches are distributed among these distances:
204 34 0.21
205 1 0.01
206 11 0.07
207 119 0.72
ACGTcount: A:0.35, C:0.13, G:0.21, T:0.31
Consensus pattern (204 bp):
AAAACAAACTTATAAACTTGTGTTGATAGCTTGAAAGTAAAGGACACCATTAAAAGATGATGCGG
GCCTACAAAGATAAGAAAAGAGATAGTGAGGTGTGCAAAGTGGTCCCTTGAGGCGCCTCCAACGT
CTTAATCAATGTTTTAGGTTCAATCAATACAACTTGATCACGTAAATTACAAAGAAATTTATTTC
TTATGCAAA
Found at i:60494602 original size:54 final size:54
Alignment explanation
Indices: 60494518--60494629 Score: 188
Period size: 54 Copynumber: 2.1 Consensus size: 54
60494508 ATTGTAAGGG
* *
60494518 TTAAATTTAATTTTTGAATATTGTTTAATATTTTTTTCATTTATGTCATTTTAA
1 TTAAATTTAATTTTTGAATATTATTTAATATTTTTTTCATTTATGTAATTTTAA
* *
60494572 TTAATTTTAATTTTTTAATATTATTTAATATTTTTTTCATTTATGTAATTTTAA
1 TTAAATTTAATTTTTGAATATTATTTAATATTTTTTTCATTTATGTAATTTTAA
60494626 TTAA
1 TTAA
60494630 CTTGTATCTT
Statistics
Matches: 54, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
54 54 1.00
ACGTcount: A:0.31, C:0.03, G:0.04, T:0.62
Consensus pattern (54 bp):
TTAAATTTAATTTTTGAATATTATTTAATATTTTTTTCATTTATGTAATTTTAA
Found at i:60494615 original size:20 final size:21
Alignment explanation
Indices: 60494582--60494620 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 21
60494572 TTAATTTTAA
*
60494582 TTTTTTAATATTATTTAATAT
1 TTTTTTAATATTATGTAATAT
*
60494603 TTTTTTCAT-TTATGTAAT
1 TTTTTTAATATTATGTAAT
60494621 TTTAATTAAC
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 8 0.50
21 8 0.50
ACGTcount: A:0.28, C:0.03, G:0.03, T:0.67
Consensus pattern (21 bp):
TTTTTTAATATTATGTAATAT
Found at i:60495583 original size:7 final size:7
Alignment explanation
Indices: 60495573--60495597 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
60495563 AGTCATTTCA
60495573 TATTTAG
1 TATTTAG
60495580 TATTTAG
1 TATTTAG
60495587 TATTTAG
1 TATTTAG
60495594 TATT
1 TATT
60495598 ATGTCTATAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.28, C:0.00, G:0.12, T:0.60
Consensus pattern (7 bp):
TATTTAG
Found at i:60496183 original size:18 final size:18
Alignment explanation
Indices: 60496156--60496195 Score: 62
Period size: 18 Copynumber: 2.2 Consensus size: 18
60496146 CAGATGCGTT
*
60496156 TCCTAGCCCTTATATGTA
1 TCCTAACCCTTATATGTA
*
60496174 TCCTAACCCTTATATGTT
1 TCCTAACCCTTATATGTA
60496192 TCCT
1 TCCT
60496196 TTTTTCAGTC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.20, C:0.30, G:0.07, T:0.42
Consensus pattern (18 bp):
TCCTAACCCTTATATGTA
Found at i:60499973 original size:126 final size:124
Alignment explanation
Indices: 60499738--60499979 Score: 283
Period size: 126 Copynumber: 1.9 Consensus size: 124
60499728 AAACATGAAG
***
60499738 TACTGTAGAAAAAGAGCGTCCACGTCGAGCCTTTTTTAAAAATTTTGCTAACATTGCATCCTGCT
1 TACTGTAGAAAAAGAGCGTCCACGTCGAGCCTTTTTTAAAAATTTTGCTAACAGCACATCCTGCT
*** * * *
60499803 TGAAGTGTTTTTGACACTAGTTGTTTAGAAATATCTTTTCAAAATTATTTTTCCAGGAAC
66 TGAACCATTTTTGACACTAGTTGTTCAGAAACATCTCTTCAAAA-TATTTTTCCAGGAAC
* * *
60499863 TACTGTAGAAAAAGAGTGTCCACGTGGGAG-CTTTTTTCAATAATTTTGC-ACACAGCACATCCT
1 TACTGTAGAAAAAGAGCGTCCACGT-CGAGCCTTTTTT-AAAAATTTTGCTA-ACAGCACATCCT
* * *
60499926 GCTTGAACCATTTTTGGCACTATTTGTTCAGAAACGTCATCTT-AAAATATTTTT
63 GCTTGAACCATTTTTGACACTAGTTGTTCAGAAACATC-TCTTCAAAATATTTTT
60499980 GCAAGGTAAA
Statistics
Matches: 98, Mismatches: 15, Indels: 8
0.81 0.12 0.07
Matches are distributed among these distances:
125 39 0.40
126 56 0.57
127 3 0.03
ACGTcount: A:0.29, C:0.18, G:0.16, T:0.37
Consensus pattern (124 bp):
TACTGTAGAAAAAGAGCGTCCACGTCGAGCCTTTTTTAAAAATTTTGCTAACAGCACATCCTGCT
TGAACCATTTTTGACACTAGTTGTTCAGAAACATCTCTTCAAAATATTTTTCCAGGAAC
Found at i:60500111 original size:7 final size:7
Alignment explanation
Indices: 60500062--60500107 Score: 83
Period size: 7 Copynumber: 6.6 Consensus size: 7
60500052 AATTAATTTT
60500062 AACCTTA
1 AACCTTA
60500069 AACCTTA
1 AACCTTA
60500076 AACCTTA
1 AACCTTA
60500083 AACCTTA
1 AACCTTA
60500090 AACCTTA
1 AACCTTA
*
60500097 AACCCTA
1 AACCTTA
60500104 AACC
1 AACC
60500108 CTAATTTACT
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
7 38 1.00
ACGTcount: A:0.43, C:0.33, G:0.00, T:0.24
Consensus pattern (7 bp):
AACCTTA
Found at i:60500140 original size:34 final size:34
Alignment explanation
Indices: 60500096--60500165 Score: 106
Period size: 34 Copynumber: 2.1 Consensus size: 34
60500086 CTTAAACCTT
* *
60500096 AAACCCTAAACCCTAATTTACTTAATTTATT-TAA
1 AAACCATAAACCCTAATTTAATTAATTT-TTATAA
60500130 AAACCATAAACCCTAATTTAATTAATTTTTATAA
1 AAACCATAAACCCTAATTTAATTAATTTTTATAA
60500164 AA
1 AA
60500166 TAATACTAAA
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
33 2 0.06
34 31 0.94
ACGTcount: A:0.46, C:0.17, G:0.00, T:0.37
Consensus pattern (34 bp):
AAACCATAAACCCTAATTTAATTAATTTTTATAA
Found at i:60502418 original size:24 final size:24
Alignment explanation
Indices: 60502382--60502437 Score: 76
Period size: 24 Copynumber: 2.3 Consensus size: 24
60502372 TCATCTTCTC
*
60502382 CATCTTCACCTCGACCCCCGTATT
1 CATCTTCACCTCGACCACCGTATT
* * *
60502406 CATCTTCATCTCGACCATCGTCTT
1 CATCTTCACCTCGACCACCGTATT
60502430 CATCTTCA
1 CATCTTCA
60502438 GCTCCACACT
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 28 1.00
ACGTcount: A:0.18, C:0.41, G:0.07, T:0.34
Consensus pattern (24 bp):
CATCTTCACCTCGACCACCGTATT
Found at i:60502453 original size:24 final size:24
Alignment explanation
Indices: 60502404--60502459 Score: 69
Period size: 24 Copynumber: 2.3 Consensus size: 24
60502394 GACCCCCGTA
* * *
60502404 TTCATCTTCATCTCGACCATCGTC
1 TTCATCTTCAGCTCCACCATCATC
60502428 TTCATCTTCAGCTCCA-CACTCATC
1 TTCATCTTCAGCTCCACCA-TCATC
60502452 TTCATCTT
1 TTCATCTT
60502460 TGTCTCCATC
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
23 2 0.07
24 26 0.93
ACGTcount: A:0.18, C:0.38, G:0.05, T:0.39
Consensus pattern (24 bp):
TTCATCTTCAGCTCCACCATCATC
Found at i:60502795 original size:12 final size:12
Alignment explanation
Indices: 60502778--60502808 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
60502768 GAATGTTGCG
*
60502778 GTGGTGCATAGT
1 GTGGTGCATAAT
60502790 GTGGTGCATAAT
1 GTGGTGCATAAT
60502802 GTGGTGC
1 GTGGTGC
60502809 TTCTGACAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.16, C:0.10, G:0.42, T:0.32
Consensus pattern (12 bp):
GTGGTGCATAAT
Found at i:60504557 original size:22 final size:22
Alignment explanation
Indices: 60504515--60504558 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
60504505 GGCTATTTAA
* *
60504515 AATTTTACCGTTGGCGCATTTG
1 AATTTTACCATTGGCGAATTTG
60504537 AATTTGTACCATTGG-GAATTTG
1 AATTT-TACCATTGGCGAATTTG
60504559 TACCATAAGA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
22 11 0.58
23 8 0.42
ACGTcount: A:0.23, C:0.14, G:0.23, T:0.41
Consensus pattern (22 bp):
AATTTTACCATTGGCGAATTTG
Found at i:60506313 original size:21 final size:21
Alignment explanation
Indices: 60506287--60506327 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
60506277 AAGAGATAGC
60506287 GTACTTTATAAATCAATGAGT
1 GTACTTTATAAATCAATGAGT
* *
60506308 GTACTTTATTAATCTATGAG
1 GTACTTTATAAATCAATGAG
60506328 AATATTTACA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.34, C:0.10, G:0.15, T:0.41
Consensus pattern (21 bp):
GTACTTTATAAATCAATGAGT
Found at i:60511658 original size:22 final size:22
Alignment explanation
Indices: 60511633--60511675 Score: 52
Period size: 22 Copynumber: 2.0 Consensus size: 22
60511623 CCATTTTTTT
60511633 AATTATTAGAATGT-AAATATTA
1 AATT-TTAGAATGTCAAATATTA
* *
60511655 AATTTTATAATTTCAAATATT
1 AATTTTAGAATGTCAAATATT
60511676 TTACTTTATA
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
21 7 0.39
22 11 0.61
ACGTcount: A:0.47, C:0.02, G:0.05, T:0.47
Consensus pattern (22 bp):
AATTTTAGAATGTCAAATATTA
Found at i:60516407 original size:37 final size:37
Alignment explanation
Indices: 60516334--60516409 Score: 143
Period size: 37 Copynumber: 2.1 Consensus size: 37
60516324 TAAAAATAAC
*
60516334 ATTAATAACTTGTTACCATATTTACTTGAATGAAAAT
1 ATTAATAACTTGTTACCATATTTACTTGAATAAAAAT
60516371 ATTAATAACTTGTTACCATATTTACTTGAATAAAAAT
1 ATTAATAACTTGTTACCATATTTACTTGAATAAAAAT
60516408 AT
1 AT
60516410 GAAAGTAAAA
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.42, C:0.11, G:0.07, T:0.41
Consensus pattern (37 bp):
ATTAATAACTTGTTACCATATTTACTTGAATAAAAAT
Found at i:60520085 original size:5 final size:5
Alignment explanation
Indices: 60520075--60520107 Score: 57
Period size: 5 Copynumber: 6.6 Consensus size: 5
60520065 AAATGATATT
*
60520075 AAATA AAATA ATATA AAATA AAATA AAATA AAA
1 AAATA AAATA AAATA AAATA AAATA AAATA AAA
60520108 AATCCTCCCT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
5 26 1.00
ACGTcount: A:0.79, C:0.00, G:0.00, T:0.21
Consensus pattern (5 bp):
AAATA
Found at i:60520088 original size:15 final size:15
Alignment explanation
Indices: 60520064--60520107 Score: 61
Period size: 15 Copynumber: 2.9 Consensus size: 15
60520054 ATGTATTATA
* *
60520064 AAAATGATATTAAAT
1 AAAATAATATAAAAT
60520079 AAAATAATATAAAAT
1 AAAATAATATAAAAT
*
60520094 AAAATAAAATAAAA
1 AAAATAATATAAAA
60520108 AATCCTCCCT
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 26 1.00
ACGTcount: A:0.73, C:0.00, G:0.02, T:0.25
Consensus pattern (15 bp):
AAAATAATATAAAAT
Found at i:60520247 original size:13 final size:13
Alignment explanation
Indices: 60520229--60520255 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
60520219 TAATATTAAT
60520229 TAATTTTTTATAA
1 TAATTTTTTATAA
60520242 TAATTTTTTATAA
1 TAATTTTTTATAA
60520255 T
1 T
60520256 TTTTATAATA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (13 bp):
TAATTTTTTATAA
Found at i:60520270 original size:13 final size:12
Alignment explanation
Indices: 60520233--60520275 Score: 63
Period size: 10 Copynumber: 3.7 Consensus size: 12
60520223 ATTAATTAAT
60520233 TTTTTATAATAA
1 TTTTTATAATAA
60520245 TTTTT-T-ATAA
1 TTTTTATAATAA
60520255 TTTTTATAATACA
1 TTTTTATAATA-A
60520268 TTTTTATA
1 TTTTTATA
60520276 TTTTTATTAA
Statistics
Matches: 28, Mismatches: 0, Indels: 5
0.85 0.00 0.15
Matches are distributed among these distances:
10 9 0.32
11 2 0.07
12 8 0.29
13 9 0.32
ACGTcount: A:0.35, C:0.02, G:0.00, T:0.63
Consensus pattern (12 bp):
TTTTTATAATAA
Found at i:60520271 original size:21 final size:21
Alignment explanation
Indices: 60520233--60520289 Score: 75
Period size: 22 Copynumber: 2.8 Consensus size: 21
60520223 ATTAATTAAT
60520233 TTTTTATAATAATTTTTTATAA
1 TTTTTATAATAATTTTTTAT-A
60520255 TTTTTATAATACA-TTTTTATA
1 TTTTTATAATA-ATTTTTTATA
60520276 TTTTTAT--TAATTTT
1 TTTTTATAATAATTTT
60520290 AATTTATTTT
Statistics
Matches: 33, Mismatches: 0, Indels: 7
0.82 0.00 0.17
Matches are distributed among these distances:
18 1 0.03
19 5 0.15
21 8 0.24
22 18 0.55
23 1 0.03
ACGTcount: A:0.32, C:0.02, G:0.00, T:0.67
Consensus pattern (21 bp):
TTTTTATAATAATTTTTTATA
Found at i:60527968 original size:19 final size:19
Alignment explanation
Indices: 60527922--60527969 Score: 71
Period size: 19 Copynumber: 2.6 Consensus size: 19
60527912 GTATATATTT
*
60527922 TAAA-TTTATTTAGGTAGA
1 TAAATTTTATTTAGGAAGA
*
60527940 TAAATCTTATTTAGGAAGA
1 TAAATTTTATTTAGGAAGA
60527959 TAAATTTTATT
1 TAAATTTTATT
60527970 CATATTTTTA
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
18 4 0.15
19 22 0.85
ACGTcount: A:0.40, C:0.02, G:0.12, T:0.46
Consensus pattern (19 bp):
TAAATTTTATTTAGGAAGA
Found at i:60531834 original size:293 final size:293
Alignment explanation
Indices: 60531307--60531892 Score: 1172
Period size: 293 Copynumber: 2.0 Consensus size: 293
60531297 TGCAGATTGG
60531307 GCAGGCTCAATAACAGATAAAAAATCTACATCAGGATACTATACATTTGTTTGAGGAAACCTTGT
1 GCAGGCTCAATAACAGATAAAAAATCTACATCAGGATACTATACATTTGTTTGAGGAAACCTTGT
60531372 GACTTAGCGAAGCAAAAAACAAAGTGTTGTAGCAAGAAGTAGTGTAGAGGCTGAGTTTAGATCAA
66 GACTTAGCGAAGCAAAAAACAAAGTGTTGTAGCAAGAAGTAGTGTAGAGGCTGAGTTTAGATCAA
60531437 TGGCTCAAGGCATTTGTGAAATGATGCGGTTAAAAAGAATTATAGGAGAGCTAAGGAAACCAATA
131 TGGCTCAAGGCATTTGTGAAATGATGCGGTTAAAAAGAATTATAGGAGAGCTAAGGAAACCAATA
60531502 ACTTCACTAATGAAGTTGTATTGTGATAGCAAAGCTGCCATTAGTATTGCTCACAACCCAGTCCA
196 ACTTCACTAATGAAGTTGTATTGTGATAGCAAAGCTGCCATTAGTATTGCTCACAACCCAGTCCA
60531567 ACATGACAGAACTAAACATGTGGAGATACTTTT
261 ACATGACAGAACTAAACATGTGGAGATACTTTT
60531600 GCAGGCTCAATAACAGATAAAAAATCTACATCAGGATACTATACATTTGTTTGAGGAAACCTTGT
1 GCAGGCTCAATAACAGATAAAAAATCTACATCAGGATACTATACATTTGTTTGAGGAAACCTTGT
60531665 GACTTAGCGAAGCAAAAAACAAAGTGTTGTAGCAAGAAGTAGTGTAGAGGCTGAGTTTAGATCAA
66 GACTTAGCGAAGCAAAAAACAAAGTGTTGTAGCAAGAAGTAGTGTAGAGGCTGAGTTTAGATCAA
60531730 TGGCTCAAGGCATTTGTGAAATGATGCGGTTAAAAAGAATTATAGGAGAGCTAAGGAAACCAATA
131 TGGCTCAAGGCATTTGTGAAATGATGCGGTTAAAAAGAATTATAGGAGAGCTAAGGAAACCAATA
60531795 ACTTCACTAATGAAGTTGTATTGTGATAGCAAAGCTGCCATTAGTATTGCTCACAACCCAGTCCA
196 ACTTCACTAATGAAGTTGTATTGTGATAGCAAAGCTGCCATTAGTATTGCTCACAACCCAGTCCA
60531860 ACATGACAGAACTAAACATGTGGAGATACTTTT
261 ACATGACAGAACTAAACATGTGGAGATACTTTT
60531893 TCAAGGAGAA
Statistics
Matches: 293, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
293 293 1.00
ACGTcount: A:0.38, C:0.15, G:0.22, T:0.26
Consensus pattern (293 bp):
GCAGGCTCAATAACAGATAAAAAATCTACATCAGGATACTATACATTTGTTTGAGGAAACCTTGT
GACTTAGCGAAGCAAAAAACAAAGTGTTGTAGCAAGAAGTAGTGTAGAGGCTGAGTTTAGATCAA
TGGCTCAAGGCATTTGTGAAATGATGCGGTTAAAAAGAATTATAGGAGAGCTAAGGAAACCAATA
ACTTCACTAATGAAGTTGTATTGTGATAGCAAAGCTGCCATTAGTATTGCTCACAACCCAGTCCA
ACATGACAGAACTAAACATGTGGAGATACTTTT
Found at i:60532119 original size:19 final size:19
Alignment explanation
Indices: 60532073--60532120 Score: 71
Period size: 19 Copynumber: 2.6 Consensus size: 19
60532063 GTATATATTT
*
60532073 TAAA-TTTATTTAGGTAGA
1 TAAATTTTATTTAGGAAGA
*
60532091 TAAATCTTATTTAGGAAGA
1 TAAATTTTATTTAGGAAGA
60532110 TAAATTTTATT
1 TAAATTTTATT
60532121 CATATTCTAA
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
18 4 0.15
19 22 0.85
ACGTcount: A:0.40, C:0.02, G:0.12, T:0.46
Consensus pattern (19 bp):
TAAATTTTATTTAGGAAGA
Found at i:60532203 original size:42 final size:42
Alignment explanation
Indices: 60532144--60532226 Score: 130
Period size: 42 Copynumber: 2.0 Consensus size: 42
60532134 TATTTTTATT
* *
60532144 TTATCTTTTAGTAGTTTATTAGAATAAGAGAACTATTTTCCC
1 TTATATTTTAATAGTTTATTAGAATAAGAGAACTATTTTCCC
* *
60532186 TTATATTTTAATAGTTTATTAGAATAAGGGAATTATTTTCC
1 TTATATTTTAATAGTTTATTAGAATAAGAGAACTATTTTCC
60532227 TAATTAGGAT
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
42 37 1.00
ACGTcount: A:0.33, C:0.08, G:0.12, T:0.47
Consensus pattern (42 bp):
TTATATTTTAATAGTTTATTAGAATAAGAGAACTATTTTCCC
Found at i:60537120 original size:5 final size:5
Alignment explanation
Indices: 60537110--60537137 Score: 56
Period size: 5 Copynumber: 5.6 Consensus size: 5
60537100 TTGATGGGTT
60537110 TTTTC TTTTC TTTTC TTTTC TTTTC TTT
1 TTTTC TTTTC TTTTC TTTTC TTTTC TTT
60537138 GTTAAAAATA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 23 1.00
ACGTcount: A:0.00, C:0.18, G:0.00, T:0.82
Consensus pattern (5 bp):
TTTTC
Found at i:60557985 original size:47 final size:42
Alignment explanation
Indices: 60557893--60557976 Score: 168
Period size: 42 Copynumber: 2.0 Consensus size: 42
60557883 GAATAGCAAC
60557893 AATTAAATTGAATTGATTGTTAAAGGAGATAATAGTTGGATT
1 AATTAAATTGAATTGATTGTTAAAGGAGATAATAGTTGGATT
60557935 AATTAAATTGAATTGATTGTTAAAGGAGATAATAGTTGGATT
1 AATTAAATTGAATTGATTGTTAAAGGAGATAATAGTTGGATT
60557977 GTATTAATTT
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
42 42 1.00
ACGTcount: A:0.40, C:0.00, G:0.21, T:0.38
Consensus pattern (42 bp):
AATTAAATTGAATTGATTGTTAAAGGAGATAATAGTTGGATT
Found at i:60568682 original size:4 final size:4
Alignment explanation
Indices: 60568673--60568708 Score: 63
Period size: 4 Copynumber: 8.8 Consensus size: 4
60568663 GTAGGGGCAG
60568673 AAAC AAAC AAAC AAAC AAAC AAAC AAAC AAGAC AAA
1 AAAC AAAC AAAC AAAC AAAC AAAC AAAC AA-AC AAA
60568709 GACGACAACC
Statistics
Matches: 31, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
4 27 0.87
5 4 0.13
ACGTcount: A:0.75, C:0.22, G:0.03, T:0.00
Consensus pattern (4 bp):
AAAC
Found at i:60584031 original size:23 final size:21
Alignment explanation
Indices: 60584001--60584065 Score: 69
Period size: 23 Copynumber: 3.0 Consensus size: 21
60583991 TGAAATTAAT
60584001 AATATTTTAGAATTTTAGAATTA
1 AATATTTTA-AATTTTA-AATTA
* *
60584024 TATATTTTATAATTTTATAATAA
1 AATATTTTA-AATTTTA-AATTA
60584047 AAT-TTTTAAATTTTAAATT
1 AATATTTTAAATTTTAAATT
60584066 TTTTATATAT
Statistics
Matches: 36, Mismatches: 6, Indels: 3
0.80 0.13 0.07
Matches are distributed among these distances:
20 3 0.08
21 7 0.19
22 5 0.14
23 21 0.58
ACGTcount: A:0.43, C:0.00, G:0.03, T:0.54
Consensus pattern (21 bp):
AATATTTTAAATTTTAAATTA
Found at i:60584641 original size:18 final size:19
Alignment explanation
Indices: 60584620--60584662 Score: 52
Period size: 18 Copynumber: 2.3 Consensus size: 19
60584610 ATATAATGGT
*
60584620 TAAAAAGTCAATAATA-TA
1 TAAAAAGTCAAAAATATTA
* *
60584638 TAAAAATTGAAAAATATTA
1 TAAAAAGTCAAAAATATTA
60584657 TAAAAA
1 TAAAAA
60584663 TTAAAAAAAT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
18 13 0.62
19 8 0.38
ACGTcount: A:0.65, C:0.02, G:0.05, T:0.28
Consensus pattern (19 bp):
TAAAAAGTCAAAAATATTA
Found at i:60584658 original size:19 final size:20
Alignment explanation
Indices: 60584632--60584679 Score: 66
Period size: 19 Copynumber: 2.5 Consensus size: 20
60584622 AAAAGTCAAT
*
60584632 AATA-TATAAAAATT-GAAA
1 AATATTATAAAAATTAAAAA
60584650 AATATTATAAAAATTAAAAA
1 AATATTATAAAAATTAAAAA
60584670 AATATT-TAAA
1 AATATTATAAA
60584680 TTTCAAGTAA
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
18 4 0.15
19 14 0.52
20 9 0.33
ACGTcount: A:0.67, C:0.00, G:0.02, T:0.31
Consensus pattern (20 bp):
AATATTATAAAAATTAAAAA
Found at i:60584668 original size:18 final size:18
Alignment explanation
Indices: 60584632--60584674 Score: 61
Period size: 18 Copynumber: 2.4 Consensus size: 18
60584622 AAAAGTCAAT
60584632 AATATATAAAAATTGAAA
1 AATATATAAAAATTGAAA
60584650 AATATTATAAAAATT-AAA
1 AATA-TATAAAAATTGAAA
*
60584668 AAAATAT
1 AATATAT
60584675 TTAAATTTCA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
17 3 0.13
18 10 0.43
19 10 0.43
ACGTcount: A:0.67, C:0.00, G:0.02, T:0.30
Consensus pattern (18 bp):
AATATATAAAAATTGAAA
Found at i:60584801 original size:21 final size:21
Alignment explanation
Indices: 60584777--60584822 Score: 65
Period size: 21 Copynumber: 2.2 Consensus size: 21
60584767 TTTTTAAACC
*
60584777 TTTTTGTATATTTTTTACAAT
1 TTTTTGTATAGTTTTTACAAT
* *
60584798 TTTTTTTATAGTTTTTACAGT
1 TTTTTGTATAGTTTTTACAAT
60584819 TTTT
1 TTTT
60584823 AATAATATTA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.20, C:0.04, G:0.07, T:0.70
Consensus pattern (21 bp):
TTTTTGTATAGTTTTTACAAT
Found at i:60587481 original size:24 final size:24
Alignment explanation
Indices: 60587448--60587499 Score: 68
Period size: 24 Copynumber: 2.2 Consensus size: 24
60587438 TTCGTAGGTC
** *
60587448 AAATAAATTATGTTAATAAATGCT
1 AAATAAATTATACTAATAAATACT
*
60587472 AAATAGATTATACTAATAAATACT
1 AAATAAATTATACTAATAAATACT
60587496 AAAT
1 AAAT
60587500 CTTTTAAAAA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.54, C:0.06, G:0.06, T:0.35
Consensus pattern (24 bp):
AAATAAATTATACTAATAAATACT
Found at i:60594504 original size:13 final size:14
Alignment explanation
Indices: 60594486--60594516 Score: 55
Period size: 13 Copynumber: 2.3 Consensus size: 14
60594476 GAGAAAGCAT
60594486 ATACACATATAA-A
1 ATACACATATAATA
60594499 ATACACATATAATA
1 ATACACATATAATA
60594513 ATAC
1 ATAC
60594517 TCGAATATTT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 12 0.71
14 5 0.29
ACGTcount: A:0.58, C:0.16, G:0.00, T:0.26
Consensus pattern (14 bp):
ATACACATATAATA
Found at i:60594739 original size:21 final size:21
Alignment explanation
Indices: 60594715--60594757 Score: 50
Period size: 21 Copynumber: 2.0 Consensus size: 21
60594705 AGGAATAATG
* *
60594715 AAACATGTATGACATGTATAT
1 AAACATATATGACATATATAT
* *
60594736 AAACCTATATGATATATATAT
1 AAACATATATGACATATATAT
60594757 A
1 A
60594758 TTTATATTGA
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.47, C:0.09, G:0.09, T:0.35
Consensus pattern (21 bp):
AAACATATATGACATATATAT
Found at i:60595127 original size:26 final size:25
Alignment explanation
Indices: 60595064--60595135 Score: 83
Period size: 25 Copynumber: 2.8 Consensus size: 25
60595054 ATATTACATA
* *
60595064 AATATGTTATAAAAACT-TAATAAT
1 AATATATTATAATAACTATAATAAT
*
60595088 ACATATATGATAATAACTATAATAAT
1 A-ATATATTATAATAACTATAATAAT
*
60595114 AATATATTAGTAATAAATATAA
1 AATATATTA-TAATAACTATAA
60595136 GAAGAATAAA
Statistics
Matches: 40, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
24 1 0.03
25 20 0.50
26 19 0.47
ACGTcount: A:0.56, C:0.04, G:0.04, T:0.36
Consensus pattern (25 bp):
AATATATTATAATAACTATAATAAT
Found at i:60595143 original size:26 final size:25
Alignment explanation
Indices: 60595090--60595143 Score: 63
Period size: 26 Copynumber: 2.1 Consensus size: 25
60595080 TTAATAATAC
* * *
60595090 ATATATGATAATAACTATAATAATA
1 ATATATGATAATAAATATAAGAAGA
*
60595115 ATATATTAGTAATAAATATAAGAAGA
1 ATATATGA-TAATAAATATAAGAAGA
60595141 ATA
1 ATA
60595144 AAAATAACAG
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.57, C:0.02, G:0.07, T:0.33
Consensus pattern (25 bp):
ATATATGATAATAAATATAAGAAGA
Found at i:60595923 original size:88 final size:89
Alignment explanation
Indices: 60595810--60595993 Score: 345
Period size: 88 Copynumber: 2.1 Consensus size: 89
60595800 TAGTTGTTTA
*
60595810 GGCTTAGTTTAGGATGAGATGGGTATGGGTTTTGAGTAGGTTTAGTTATTGGGTTTTGTGGTGGG
1 GGCTTAGTTTAGGATGAGATGGGTATGGGTTTTGAGTAGGTTTAGTTATTGGGTTTTGGGGTGGG
60595875 TTAGTTGGGTTTTGGGGTTTAATG
66 TTAGTTGGGTTTTGGGGTTTAATG
60595899 GGCTT-GTTTAGGATGAGATGGGTATGGGTTTTGAGTAGGTTTAGTTATTGGGTTTTGGGGTGGG
1 GGCTTAGTTTAGGATGAGATGGGTATGGGTTTTGAGTAGGTTTAGTTATTGGGTTTTGGGGTGGG
60595963 TTAGTTGGGTTTTGGGGTTTAATG
66 TTAGTTGGGTTTTGGGGTTTAATG
60595987 GG-TTAGT
1 GGCTTAGT
60595994 GATTTAATGG
Statistics
Matches: 93, Mismatches: 1, Indels: 3
0.96 0.01 0.03
Matches are distributed among these distances:
87 2 0.02
88 86 0.92
89 5 0.05
ACGTcount: A:0.14, C:0.01, G:0.41, T:0.43
Consensus pattern (89 bp):
GGCTTAGTTTAGGATGAGATGGGTATGGGTTTTGAGTAGGTTTAGTTATTGGGTTTTGGGGTGGG
TTAGTTGGGTTTTGGGGTTTAATG
Found at i:60595972 original size:21 final size:20
Alignment explanation
Indices: 60595942--60595980 Score: 69
Period size: 21 Copynumber: 1.9 Consensus size: 20
60595932 AGTAGGTTTA
60595942 GTTATTGGGTTTTGGGGTGG
1 GTTATTGGGTTTTGGGGTGG
60595962 GTTAGTTGGGTTTTGGGGT
1 GTTA-TTGGGTTTTGGGGT
60595981 TTAATGGGTT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 4 0.22
21 14 0.78
ACGTcount: A:0.05, C:0.00, G:0.49, T:0.46
Consensus pattern (20 bp):
GTTATTGGGTTTTGGGGTGG
Found at i:60596947 original size:139 final size:131
Alignment explanation
Indices: 60596769--60597129 Score: 564
Period size: 129 Copynumber: 2.7 Consensus size: 131
60596759 TACCTCGACA
*
60596769 TGTGACCTGAGGCTCAACTCACATCTCGCAATATGAGTTGATTTTGAAAAAGTAGAGATTAAAAG
1 TGTGTCCTGAGGCTCAACTCACATCTCGCAATATGAGTTGATTTTGAAAAAGTAGAGATTAAAAG
*
60596834 GTTCAACCCACCTCTCGCTATATGAGTTATTTTTTTTGTTTTTTTTTTGACAACAGAAATTGAAA
66 GTTCAACCCACCTCTCGCAATATGAG-------TTTTGTTTTTTTTTT-ACAACAGAAATTGAAA
60596899 TTACCTCAG
123 TTACCTCAG
*
60596908 TGTGTCCTGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTGAAAAAGTAGAGATTAAAAG
1 TGTGTCCTGAGGCTCAACTCACATCTCGCAATATGAGTTGATTTTGAAAAAGTAGAGATTAAAAG
* *
60596973 GTTCAACCCACCTCTTGCCATATGAG--TTGTTTTTTTTTTACAACAGAAATTGAAATTACCTCA
66 GTTCAACCCACCTCTCGCAATATGAGTTTTGTTTTTTTTTTACAACAGAAATTGAAATTACCTCA
60597036 G
131 G
* * *
60597037 CGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGAAAAAGTAGAAATTAAAAG
1 TGTGTCCTGAGGCTCAACTCACATCTCGCAATATGAGTTGATTTTGAAAAAGTAGAGATTAAAAG
60597102 GTTCAACCCACCTCTCGCAATATGAGTT
66 GTTCAACCCACCTCTCGCAATATGAGTT
60597130 GGTTCTTGAA
Statistics
Matches: 211, Mismatches: 9, Indels: 12
0.91 0.04 0.05
Matches are distributed among these distances:
129 111 0.53
130 13 0.06
139 87 0.41
ACGTcount: A:0.30, C:0.19, G:0.17, T:0.33
Consensus pattern (131 bp):
TGTGTCCTGAGGCTCAACTCACATCTCGCAATATGAGTTGATTTTGAAAAAGTAGAGATTAAAAG
GTTCAACCCACCTCTCGCAATATGAGTTTTGTTTTTTTTTTACAACAGAAATTGAAATTACCTCA
G
Found at i:60597103 original size:129 final size:129
Alignment explanation
Indices: 60596869--60597221 Score: 472
Period size: 129 Copynumber: 2.6 Consensus size: 129
60596859 GTTATTTTTT
* *
60596869 TTGTTTTTTTTTTGACAACAGAAATTGAAATTACCTCAGTGTGTCCTGAGGCTCAACTCACTTCT
1 TTGTTTTTTTTTT-ACAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCT
* * *
60596934 CGCAATATGAGTTGATTTTGAAAAAGTAGAGATTAAAAGGTTCAACCCACCTCTTGCCATATGAG
65 CGCAATATGAGTTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAG
60596999 TTGTTTTTTTTTTACAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTC
1 TTGTTTTTTTTTTACAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTC
60597064 GCAATATGAGTTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAG
66 GCAATATGAGTTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAG
** * * * * * *
60597128 TTGGTTCTTGAACAGCATAAATTGAAAATAGGAATTGAAAATACCTCAGCGTGACCTGAGGCTCA
1 TT-GTT-TT--------T-TTTTTACAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCA
*
60597193 ACTCACCTCTCGCAATATGAGCTGATTTT
55 ACTCACCTCTCGCAATATGAGTTGATTTT
60597222 TTTTGAAAAG
Statistics
Matches: 198, Mismatches: 14, Indels: 12
0.88 0.06 0.05
Matches are distributed among these distances:
129 113 0.57
130 16 0.08
131 2 0.01
139 1 0.01
140 66 0.33
ACGTcount: A:0.31, C:0.20, G:0.18, T:0.32
Consensus pattern (129 bp):
TTGTTTTTTTTTTACAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTC
GCAATATGAGTTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAG
Found at i:60597150 original size:54 final size:55
Alignment explanation
Indices: 60597050--60597155 Score: 144
Period size: 54 Copynumber: 1.9 Consensus size: 55
60597040 GTCCTGAGGC
* *
60597050 TCAACTCACCTCTCGCAATATGAGTTGATTTTGAAAAAGTAGAAATT-AAAAGGT
1 TCAACCCACCTCTCGCAATATGAGTTGATTTTGAAAAAGCAGAAATTGAAAAGGT
* * *
60597104 TCAACCCACCTCTCGCAATATGAGTTGGTTCTTG-AACAGCATAAATTGAAAA
1 TCAACCCACCTCTCGCAATATGAGTTGATT-TTGAAAAAGCAGAAATTGAAAA
60597156 TAGGAATTGA
Statistics
Matches: 45, Mismatches: 5, Indels: 3
0.85 0.09 0.06
Matches are distributed among these distances:
54 38 0.84
55 7 0.16
ACGTcount: A:0.37, C:0.19, G:0.16, T:0.28
Consensus pattern (55 bp):
TCAACCCACCTCTCGCAATATGAGTTGATTTTGAAAAAGCAGAAATTGAAAAGGT
Found at i:60597243 original size:14 final size:14
Alignment explanation
Indices: 60597224--60597259 Score: 63
Period size: 14 Copynumber: 2.6 Consensus size: 14
60597214 CTGATTTTTT
*
60597224 TTGAAAAGTAGGAA
1 TTGAAAAGTAGAAA
60597238 TTGAAAAGTAGAAA
1 TTGAAAAGTAGAAA
60597252 TTGAAAAG
1 TTGAAAAG
60597260 ACCTCAGCGT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.53, C:0.00, G:0.25, T:0.22
Consensus pattern (14 bp):
TTGAAAAGTAGAAA
Found at i:60597371 original size:69 final size:70
Alignment explanation
Indices: 60597255--60597554 Score: 289
Period size: 73 Copynumber: 4.2 Consensus size: 70
60597245 GTAGAAATTG
* * **
60597255 AAAAGACCTCAGCGTGCCCCGAGGCTTGACTCACCTCTCGCAATATGAGT-ATTTTCT-AAACAT
1 AAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTAATTTT-TGAAACAT
60597318 AAACTA
65 AAACTA
* * * * * *
60597324 AAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCCCTCGCCATATGAGCTGATTTTTGAAAAAA
1 AAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAG-TAATTTTTGAAACAT
* *
60597389 AAGGAATT
65 AA--ACTA
* **
60597397 AAAATACCTCAGCGTGACCTGAGGCTTGACTCACCTCTCGCAATATGAGTCAATTTTTGAAACAT
1 AAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGT-AATTTTTGAAACAT
60597462 AAACTA
65 AAACTA
* ** * *
60597468 AAAATACCTCAGCGTGTGACCTGAGGCTCAACTCATTTCTCACAATATGAGTTGATTTTTTGAAA
1 AAAATACCTCAGC--GTGACCCGAGGCTCAACTCACCTCTCGCAATATGAG-T-AATTTTTG-AA
* *
60597533 ACATGAATTA
61 ACATAAACTA
*
60597543 AAGATACCTCAG
1 AAAATACCTCAG
60597555 AGTACCCAAA
Statistics
Matches: 191, Mismatches: 30, Indels: 14
0.81 0.13 0.06
Matches are distributed among these distances:
69 44 0.23
70 2 0.01
71 26 0.14
72 1 0.01
73 89 0.47
74 8 0.04
75 21 0.11
ACGTcount: A:0.33, C:0.24, G:0.16, T:0.26
Consensus pattern (70 bp):
AAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTAATTTTTGAAACATA
AACTA
Found at i:60597554 original size:146 final size:141
Alignment explanation
Indices: 60597250--60597554 Score: 398
Period size: 142 Copynumber: 2.1 Consensus size: 141
60597240 GAAAAGTAGA
* *
60597250 AATTGAAAAGACCTCAGCGTGCCCCGAGGCTTGACTCACCTCTCGCAATATGAGTATTTTCTAAA
1 AATT-AAAATACCTCAGCGTGACCCGAGGCTTGACTCACCTCTCGCAATATGAGTATTTTCTAAA
* * *
60597315 CATAAACTAAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCCCTCGCCATATGAGCTGATTT
65 CATAAACTAAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCCCTCACAATATGAGCTGATTT
60597380 TTGAAAAAAAAGG
130 TTG-AAAAAAAGG
*
60597393 AATTAAAATACCTCAGCGTGACCTGAGGCTTGACTCACCTCTCGCAATATGAGTCAATTTT-TGA
1 AATTAAAATACCTCAGCGTGACCCGAGGCTTGACTCACCTCTCGCAATATGAGT--ATTTTCT-A
* *** *
60597457 AACATAAACTAAAAATACCTCAGCGTGTGACCTGAGGCTCAACTCATTTCTCACAATATGAGTTG
63 AACATAAACTAAAAATACCTCAGC--GTGACCCGAGGCTCAACTCACCCCTCACAATATGAGCTG
* *
60597522 ATTTTTTG-AAAACATG
126 A-TTTTTGAAAAAAAGG
60597538 AATTAAAGATACCTCAG
1 AATTAAA-ATACCTCAG
60597555 AGTACCCAAA
Statistics
Matches: 142, Mismatches: 13, Indels: 11
0.86 0.08 0.07
Matches are distributed among these distances:
142 47 0.33
143 5 0.04
144 30 0.21
145 13 0.09
146 41 0.29
147 6 0.04
ACGTcount: A:0.33, C:0.24, G:0.16, T:0.26
Consensus pattern (141 bp):
AATTAAAATACCTCAGCGTGACCCGAGGCTTGACTCACCTCTCGCAATATGAGTATTTTCTAAAC
ATAAACTAAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCCCTCACAATATGAGCTGATTTT
TGAAAAAAAGG
Found at i:60620561 original size:21 final size:20
Alignment explanation
Indices: 60620531--60620569 Score: 69
Period size: 21 Copynumber: 1.9 Consensus size: 20
60620521 AGTAGGTTTA
60620531 GTTATTGGGTTTTGGGGTGG
1 GTTATTGGGTTTTGGGGTGG
60620551 GTTAGTTGGGTTTTGGGGT
1 GTTA-TTGGGTTTTGGGGT
60620570 TTAATGGGTT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 4 0.22
21 14 0.78
ACGTcount: A:0.05, C:0.00, G:0.49, T:0.46
Consensus pattern (20 bp):
GTTATTGGGTTTTGGGGTGG
Found at i:60621581 original size:139 final size:132
Alignment explanation
Indices: 60621399--60621791 Score: 612
Period size: 129 Copynumber: 2.9 Consensus size: 132
60621389 TATGAGTTGA
* *
60621399 TTTTTGAAAAACAAAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACATCTCGCAATA
1 TTTTTG-ACAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACATCTCGCAATA
*
60621464 TGAGTTGATTTTGAAAAAGTAGAGATTAAAAGGTTCAACCCACCTCTCGCTATATGAGTTATTTT
65 TGAGTTGATTTTGAAAAAGTAGAGATTAAAAGGTTCAACCCACCTCTCGCAATATGAG-------
60621529 TTTTGTTTTT
123 TTTTGTTTTT
* *
60621539 TTTTTGACAACAGAAATTGAAATTACCTCAGTGTGTCCTGAGGCTCAACTCACTTCTCGCAATAT
1 TTTTTGACAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACATCTCGCAATAT
* *
60621604 GAGTTGATTTTGAAAAAGTAGAGATTAAAAGGTTCAACCCACCTCTTGCCATATGAG--TTGTTT
66 GAGTTGATTTTGAAAAAGTAGAGATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTTTGTTT
60621667 TT
131 TT
*
60621669 TTTTT-ACAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATAT
1 TTTTTGACAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACATCTCGCAATAT
*
60621733 GAGTTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTT
66 GAGTTGATTTTGAAAAAGTAGAGATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTT
60621792 GGTTCTTGAA
Statistics
Matches: 240, Mismatches: 11, Indels: 13
0.91 0.04 0.05
Matches are distributed among these distances:
129 111 0.46
130 13 0.05
139 110 0.46
140 6 0.03
ACGTcount: A:0.32, C:0.19, G:0.17, T:0.33
Consensus pattern (132 bp):
TTTTTGACAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACATCTCGCAATAT
GAGTTGATTTTGAAAAAGTAGAGATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTTTGTTT
TT
Found at i:60621678 original size:129 final size:130
Alignment explanation
Indices: 60621531--60621883 Score: 483
Period size: 129 Copynumber: 2.6 Consensus size: 130
60621521 GTTATTTTTT
* *
60621531 TTGTTTTTTTTTTGACAACAGAAATTGAAATTACCTCAGTGTGTCCTGAGGCTCAACTCACTTCT
1 TTGTTTTTTTTTTGACAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCT
* * *
60621596 CGCAATATGAGTTGATTTTGAAAAAGTAGAGATTAAAAGGTTCAACCCACCTCTTGCCATATGAG
66 CGCAATATGAGTTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAG
60621661 TTGTTTTTTTTTT-ACAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCT
1 TTGTTTTTTTTTTGACAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCT
60621725 CGCAATATGAGTTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAG
66 CGCAATATGAGTTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAG
*** * * * * *
60621790 TTGGTTCTTGAACAGCATAAATTGAAAATAGGAATTGAAAATACCTCAGCGTGACCTGAGGCTCA
1 TT-GTT-TT--------TTTTTTGACAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCA
*
60621855 ACTCACCTCTCGCAATATGAGCTGATTTT
56 ACTCACCTCTCGCAATATGAGTTGATTTT
60621884 TTTTGAAAAG
Statistics
Matches: 198, Mismatches: 14, Indels: 12
0.88 0.06 0.05
Matches are distributed among these distances:
129 113 0.57
130 16 0.08
131 2 0.01
139 3 0.02
140 64 0.32
ACGTcount: A:0.31, C:0.20, G:0.18, T:0.32
Consensus pattern (130 bp):
TTGTTTTTTTTTTGACAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCT
CGCAATATGAGTTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAG
Found at i:60621812 original size:54 final size:55
Alignment explanation
Indices: 60621712--60621817 Score: 144
Period size: 54 Copynumber: 1.9 Consensus size: 55
60621702 GTCCTGAGGC
* *
60621712 TCAACTCACCTCTCGCAATATGAGTTGATTTTGAAAAAGTAGAAATT-AAAAGGT
1 TCAACCCACCTCTCGCAATATGAGTTGATTTTGAAAAAGCAGAAATTGAAAAGGT
* * *
60621766 TCAACCCACCTCTCGCAATATGAGTTGGTTCTTG-AACAGCATAAATTGAAAA
1 TCAACCCACCTCTCGCAATATGAGTTGATT-TTGAAAAAGCAGAAATTGAAAA
60621818 TAGGAATTGA
Statistics
Matches: 45, Mismatches: 5, Indels: 3
0.85 0.09 0.06
Matches are distributed among these distances:
54 38 0.84
55 7 0.16
ACGTcount: A:0.37, C:0.19, G:0.16, T:0.28
Consensus pattern (55 bp):
TCAACCCACCTCTCGCAATATGAGTTGATTTTGAAAAAGCAGAAATTGAAAAGGT
Found at i:60621905 original size:14 final size:14
Alignment explanation
Indices: 60621886--60621921 Score: 63
Period size: 14 Copynumber: 2.6 Consensus size: 14
60621876 CTGATTTTTT
*
60621886 TTGAAAAGTAGGAA
1 TTGAAAAGTAGAAA
60621900 TTGAAAAGTAGAAA
1 TTGAAAAGTAGAAA
60621914 TTGAAAAG
1 TTGAAAAG
60621922 ACCTCAGCGT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.53, C:0.00, G:0.25, T:0.22
Consensus pattern (14 bp):
TTGAAAAGTAGAAA
Found at i:60622033 original size:69 final size:70
Alignment explanation
Indices: 60621917--60622216 Score: 289
Period size: 73 Copynumber: 4.2 Consensus size: 70
60621907 GTAGAAATTG
* * **
60621917 AAAAGACCTCAGCGTGCCCCGAGGCTTGACTCACCTCTCGCAATATGAGT-ATTTTCT-AAACAT
1 AAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTAATTTT-TGAAACAT
60621980 AAACTA
65 AAACTA
* * * * * *
60621986 AAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCCCTCGCCATATGAGCTGATTTTTGAAAAAA
1 AAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAG-TAATTTTTGAAACAT
* *
60622051 AAGGAATT
65 AA--ACTA
* **
60622059 AAAATACCTCAGCGTGACCTGAGGCTTGACTCACCTCTCGCAATATGAGTCAATTTTTGAAACAT
1 AAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGT-AATTTTTGAAACAT
60622124 AAACTA
65 AAACTA
* ** * *
60622130 AAAATACCTCAGCGTGTGACCTGAGGCTCAACTCATTTCTCACAATATGAGTTGATTTTTTGAAA
1 AAAATACCTCAGC--GTGACCCGAGGCTCAACTCACCTCTCGCAATATGAG-T-AATTTTTG-AA
* *
60622195 ACATGAATTA
61 ACATAAACTA
*
60622205 AAGATACCTCAG
1 AAAATACCTCAG
60622217 AGTACCCAAA
Statistics
Matches: 191, Mismatches: 30, Indels: 14
0.81 0.13 0.06
Matches are distributed among these distances:
69 44 0.23
70 2 0.01
71 26 0.14
72 1 0.01
73 89 0.47
74 8 0.04
75 21 0.11
ACGTcount: A:0.33, C:0.24, G:0.16, T:0.26
Consensus pattern (70 bp):
AAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTAATTTTTGAAACATA
AACTA
Found at i:60622216 original size:146 final size:141
Alignment explanation
Indices: 60621912--60622216 Score: 398
Period size: 142 Copynumber: 2.1 Consensus size: 141
60621902 GAAAAGTAGA
* *
60621912 AATTGAAAAGACCTCAGCGTGCCCCGAGGCTTGACTCACCTCTCGCAATATGAGTATTTTCTAAA
1 AATT-AAAATACCTCAGCGTGACCCGAGGCTTGACTCACCTCTCGCAATATGAGTATTTTCTAAA
* * *
60621977 CATAAACTAAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCCCTCGCCATATGAGCTGATTT
65 CATAAACTAAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCCCTCACAATATGAGCTGATTT
60622042 TTGAAAAAAAAGG
130 TTG-AAAAAAAGG
*
60622055 AATTAAAATACCTCAGCGTGACCTGAGGCTTGACTCACCTCTCGCAATATGAGTCAATTTT-TGA
1 AATTAAAATACCTCAGCGTGACCCGAGGCTTGACTCACCTCTCGCAATATGAGT--ATTTTCT-A
* *** *
60622119 AACATAAACTAAAAATACCTCAGCGTGTGACCTGAGGCTCAACTCATTTCTCACAATATGAGTTG
63 AACATAAACTAAAAATACCTCAGC--GTGACCCGAGGCTCAACTCACCCCTCACAATATGAGCTG
* *
60622184 ATTTTTTG-AAAACATG
126 A-TTTTTGAAAAAAAGG
60622200 AATTAAAGATACCTCAG
1 AATTAAA-ATACCTCAG
60622217 AGTACCCAAA
Statistics
Matches: 142, Mismatches: 13, Indels: 11
0.86 0.08 0.07
Matches are distributed among these distances:
142 47 0.33
143 5 0.04
144 30 0.21
145 13 0.09
146 41 0.29
147 6 0.04
ACGTcount: A:0.33, C:0.24, G:0.16, T:0.26
Consensus pattern (141 bp):
AATTAAAATACCTCAGCGTGACCCGAGGCTTGACTCACCTCTCGCAATATGAGTATTTTCTAAAC
ATAAACTAAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCCCTCACAATATGAGCTGATTTT
TGAAAAAAAGG
Found at i:60631974 original size:53 final size:53
Alignment explanation
Indices: 60631818--60631983 Score: 221
Period size: 53 Copynumber: 3.1 Consensus size: 53
60631808 GACGAAAAAT
* **
60631818 ATGTGATAAGTGTG-C-CCGTTTAAGACCATAGCTGGGCTATGGCATCGGTGCA
1 ATGTGATAA-TGTGACTCCGTATAAGACCATAGCTGGGCTATGGCATCGGTATA
60631870 ATGTGATAATGTGACTCCGTATAAGACCATAGCTGGGCTATGGCATCGGTATA
1 ATGTGATAATGTGACTCCGTATAAGACCATAGCTGGGCTATGGCATCGGTATA
* * *
60631923 ATGTGATAATGTGATTCCGTATAAGACCAT-GTCTGGGATATGGCTTCGGTATGA
1 ATGTGATAATGTGACTCCGTATAAGACCATAG-CTGGGCTATGGCATCGGTAT-A
60631977 TATGTGA
1 -ATGTGA
60631984 ACCGTGTAAG
Statistics
Matches: 103, Mismatches: 6, Indels: 7
0.89 0.05 0.06
Matches are distributed among these distances:
51 4 0.04
52 11 0.11
53 81 0.79
54 1 0.01
55 6 0.06
ACGTcount: A:0.26, C:0.16, G:0.28, T:0.30
Consensus pattern (53 bp):
ATGTGATAATGTGACTCCGTATAAGACCATAGCTGGGCTATGGCATCGGTATA
Found at i:60634429 original size:24 final size:25
Alignment explanation
Indices: 60634392--60634454 Score: 64
Period size: 23 Copynumber: 2.6 Consensus size: 25
60634382 GAATTAATAG
60634392 ACCCTAAA-TCCTAAACAACT-CTAAA
1 ACCCTAAACT-CTAAACAA-TACTAAA
60634417 A-CCTAAACTCT-AA-AATACTAAA
1 ACCCTAAACTCTAAACAATACTAAA
*
60634439 ACCCTAAACACTAAAC
1 ACCCTAAACTCTAAAC
60634455 CTTTAGATCA
Statistics
Matches: 32, Mismatches: 1, Indels: 10
0.74 0.02 0.23
Matches are distributed among these distances:
21 1 0.03
22 8 0.25
23 11 0.34
24 10 0.31
25 2 0.06
ACGTcount: A:0.51, C:0.30, G:0.00, T:0.19
Consensus pattern (25 bp):
ACCCTAAACTCTAAACAATACTAAA
Found at i:60634546 original size:22 final size:22
Alignment explanation
Indices: 60634521--60634562 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
60634511 AACCACAAGC
*
60634521 CCTATATCATAAACCCTAAAAT
1 CCTATACCATAAACCCTAAAAT
* *
60634543 CCTATACCTTAAACCTTAAA
1 CCTATACCATAAACCCTAAA
60634563 TCACATGCCT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 17 1.00
ACGTcount: A:0.43, C:0.29, G:0.00, T:0.29
Consensus pattern (22 bp):
CCTATACCATAAACCCTAAAAT
Found at i:60636007 original size:31 final size:31
Alignment explanation
Indices: 60635969--60636027 Score: 109
Period size: 31 Copynumber: 1.9 Consensus size: 31
60635959 ATTATCATTC
60635969 AATTATTTCAAAATTTTTATTTAAGTCACTA
1 AATTATTTCAAAATTTTTATTTAAGTCACTA
*
60636000 AATTATTTGAAAATTTTTATTTAAGTCA
1 AATTATTTCAAAATTTTTATTTAAGTCA
60636028 TTGAATTGTT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
31 27 1.00
ACGTcount: A:0.39, C:0.07, G:0.05, T:0.49
Consensus pattern (31 bp):
AATTATTTCAAAATTTTTATTTAAGTCACTA
Found at i:60641716 original size:24 final size:24
Alignment explanation
Indices: 60641684--60641730 Score: 85
Period size: 24 Copynumber: 2.0 Consensus size: 24
60641674 AGCTCAAGTC
*
60641684 ATGTAAATAGATCTGGTACGGAAG
1 ATGTAAATAGATCAGGTACGGAAG
60641708 ATGTAAATAGATCAGGTACGGAA
1 ATGTAAATAGATCAGGTACGGAA
60641731 AGCTCATATA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.40, C:0.09, G:0.28, T:0.23
Consensus pattern (24 bp):
ATGTAAATAGATCAGGTACGGAAG
Found at i:60658623 original size:222 final size:223
Alignment explanation
Indices: 60658237--60658680 Score: 836
Period size: 222 Copynumber: 2.0 Consensus size: 223
60658227 TAGAAAATGA
60658237 AGGAAGAGAAGAAATAATATTAGAATTTGTTGATATGATTTCCAAATGAAATCCCATTCCTATTT
1 AGGAAGAGAAGAAATAATATTAGAATTTGTTGATATGATTTCCAAATGAAATCCCATTCCTATTT
60658302 ATAGGAATTTTCATGTCTCTTCATAAAGACATCTTTCAATAGGTGTCTTTATGAATAAATAAATA
66 ATAGGAATTTTCATGTCTCTTCATAAAGACATCTTTCAATAGGTGTCTTTATGAATAAATAAATA
*
60658367 AAAATAATTATTCATTTAATTTTGTAACTATTCAAATAATA-TTTTTGAATAGTTATAATTTTTT
131 AAAATAATTATTCATTTAATTTTGTAACTATTCAAATAATATTTTTTGAATAGTTATAATTCTTT
60658431 TTTAAAAAATCAAATGATATAACTTTTG
196 TTTAAAAAATCAAATGATATAACTTTTG
*
60658459 AGGAAGAGAAGAAATAATATTAGAATTTGTTGATATGATTTCCAAATGAAATTCCATTCCTATTT
1 AGGAAGAGAAGAAATAATATTAGAATTTGTTGATATGATTTCCAAATGAAATCCCATTCCTATTT
* *
60658524 ATAGGAATTTTCATGTCTCTTCATAGAGACATCTTTCAATAGGTGTCTTTATGAGTAAATAAATA
66 ATAGGAATTTTCATGTCTCTTCATAAAGACATCTTTCAATAGGTGTCTTTATGAATAAATAAATA
*
60658589 ATAATAATTATTCATTTAATTTTGTAACTATTCAAATAATATTTTTTGAATAGTTATAATTCTTT
131 AAAATAATTATTCATTTAATTTTGTAACTATTCAAATAATATTTTTTGAATAGTTATAATTCTTT
60658654 TTTAAAAAATCAAATGATATAACTTTT
196 TTTAAAAAATCAAATGATATAACTTTT
60658681 AACCAATGAC
Statistics
Matches: 216, Mismatches: 5, Indels: 1
0.97 0.02 0.00
Matches are distributed among these distances:
222 167 0.77
223 49 0.23
ACGTcount: A:0.39, C:0.09, G:0.11, T:0.41
Consensus pattern (223 bp):
AGGAAGAGAAGAAATAATATTAGAATTTGTTGATATGATTTCCAAATGAAATCCCATTCCTATTT
ATAGGAATTTTCATGTCTCTTCATAAAGACATCTTTCAATAGGTGTCTTTATGAATAAATAAATA
AAAATAATTATTCATTTAATTTTGTAACTATTCAAATAATATTTTTTGAATAGTTATAATTCTTT
TTTAAAAAATCAAATGATATAACTTTTG
Found at i:60661807 original size:21 final size:21
Alignment explanation
Indices: 60661781--60661832 Score: 95
Period size: 21 Copynumber: 2.5 Consensus size: 21
60661771 CTTCAAAAAT
60661781 TATAAAAATTTAATTTAATCC
1 TATAAAAATTTAATTTAATCC
60661802 TATAAAAATTTAATTTAATCC
1 TATAAAAATTTAATTTAATCC
*
60661823 TTTAAAAATT
1 TATAAAAATT
60661833 ATAAAGATAT
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
21 30 1.00
ACGTcount: A:0.48, C:0.08, G:0.00, T:0.44
Consensus pattern (21 bp):
TATAAAAATTTAATTTAATCC
Found at i:60662434 original size:30 final size:31
Alignment explanation
Indices: 60662395--60662455 Score: 81
Period size: 31 Copynumber: 2.0 Consensus size: 31
60662385 AATTTATTAT
60662395 AAAGCTAAAA-AAA-TATAAAAATTATCAAAA
1 AAAGCTAAAATAAACTAT-AAAATTATCAAAA
* *
60662425 AAAGGTAAAATAAACTATAAAATTATTAAAA
1 AAAGCTAAAATAAACTATAAAATTATCAAAA
60662456 GAAACTTATT
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
30 9 0.33
31 15 0.56
32 3 0.11
ACGTcount: A:0.67, C:0.05, G:0.05, T:0.23
Consensus pattern (31 bp):
AAAGCTAAAATAAACTATAAAATTATCAAAA
Found at i:60662864 original size:16 final size:16
Alignment explanation
Indices: 60662843--60662875 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
60662833 AGTCATAATG
60662843 AATACATATTAAATTA
1 AATACATATTAAATTA
60662859 AATACATATTAAATTA
1 AATACATATTAAATTA
60662875 A
1 A
60662876 CATGTATGAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.58, C:0.06, G:0.00, T:0.36
Consensus pattern (16 bp):
AATACATATTAAATTA
Found at i:60667069 original size:33 final size:34
Alignment explanation
Indices: 60667005--60667069 Score: 89
Period size: 34 Copynumber: 1.9 Consensus size: 34
60666995 AAAAAATAGT
*
60667005 TTTTAACATTACAATTAAAAAAATTGAAATTATG
1 TTTTAACATTACAATTAAAAAAATTAAAATTATG
*
60667039 TTTTAACATTA-AATT-TAAAAATTAATAATTA
1 TTTTAACATTACAATTAAAAAAATTAA-AATTA
60667070 ATTTGATAAT
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
32 8 0.29
33 9 0.32
34 11 0.39
ACGTcount: A:0.51, C:0.05, G:0.03, T:0.42
Consensus pattern (34 bp):
TTTTAACATTACAATTAAAAAAATTAAAATTATG
Found at i:60669974 original size:22 final size:22
Alignment explanation
Indices: 60669947--60669991 Score: 90
Period size: 22 Copynumber: 2.0 Consensus size: 22
60669937 CAGCAAAGAA
60669947 AAACTGGGAAAAAAATTGGAAG
1 AAACTGGGAAAAAAATTGGAAG
60669969 AAACTGGGAAAAAAATTGGAAG
1 AAACTGGGAAAAAAATTGGAAG
60669991 A
1 A
60669992 CTTTTTTTGT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.56, C:0.04, G:0.27, T:0.13
Consensus pattern (22 bp):
AAACTGGGAAAAAAATTGGAAG
Found at i:60673748 original size:20 final size:20
Alignment explanation
Indices: 60673718--60673770 Score: 72
Period size: 20 Copynumber: 2.6 Consensus size: 20
60673708 TATTTTTATT
*
60673718 TTTATATATATTTTAAAAT-
1 TTTATATATATTTCAAAATA
*
60673737 TATTATACATATTTCAAAATA
1 T-TTATATATATTTCAAAATA
60673758 TTTATATATATTT
1 TTTATATATATTT
60673771 ATATATTTTT
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
19 1 0.03
20 27 0.93
21 1 0.03
ACGTcount: A:0.42, C:0.04, G:0.00, T:0.55
Consensus pattern (20 bp):
TTTATATATATTTCAAAATA
Found at i:60673781 original size:20 final size:20
Alignment explanation
Indices: 60673715--60673781 Score: 66
Period size: 20 Copynumber: 3.4 Consensus size: 20
60673705 GCATATTTTT
60673715 ATTTTTATATATATTT-TAAA
1 ATTTTTATATATATTTAT-AA
* *
60673735 ATTATTATACATATTTCA-AA
1 ATTTTTATATATATTT-ATAA
* *
60673755 ATATTTATATATATTTATAT
1 ATTTTTATATATATTTATAA
60673775 ATTTTTA
1 ATTTTTA
60673782 AATTTAAGAT
Statistics
Matches: 37, Mismatches: 7, Indels: 6
0.74 0.14 0.12
Matches are distributed among these distances:
19 1 0.03
20 36 0.97
ACGTcount: A:0.40, C:0.03, G:0.00, T:0.57
Consensus pattern (20 bp):
ATTTTTATATATATTTATAA
Found at i:60675044 original size:32 final size:32
Alignment explanation
Indices: 60674977--60675044 Score: 75
Period size: 32 Copynumber: 2.1 Consensus size: 32
60674967 AATTTTTAAA
*
60674977 ATTTATTGTTATATTTTAAAATTCATTTATGT
1 ATTTATTGTTATATTTTAAAATTCATATATGT
* * * *
60675009 ATTTATT-TTTTATTTTTAAAGTTTATATATTT
1 ATTTATTGTTATA-TTTTAAAATTCATATATGT
60675041 ATTT
1 ATTT
60675045 TCAACTCCAT
Statistics
Matches: 30, Mismatches: 5, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
31 4 0.13
32 26 0.87
ACGTcount: A:0.29, C:0.01, G:0.04, T:0.65
Consensus pattern (32 bp):
ATTTATTGTTATATTTTAAAATTCATATATGT
Done.