Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr9
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 91122320
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2661692 characters in sequence are not A, C, G, or T
File 19 of 279
Found at i:6110157 original size:30 final size:31
Alignment explanation
Indices: 6110123--6110204 Score: 114
Period size: 30 Copynumber: 2.7 Consensus size: 31
6110113 TTTGAAAAGC
*
6110123 AAAAAGAAAATGAAAAAGAAA-ATGAGATTG
1 AAAAAGAAAATGAAAAAGAAATATGAGAGTG
* *
6110153 AAAAAGAGAATG-AAAAGAAATTTGAGAGTG
1 AAAAAGAAAATGAAAAAGAAATATGAGAGTG
*
6110183 AAAAAGAAGATGAAAAAGAAAT
1 AAAAAGAAAATGAAAAAGAAAT
6110205 TGAAACAAAA
Statistics
Matches: 45, Mismatches: 5, Indels: 3
0.85 0.09 0.06
Matches are distributed among these distances:
29 8 0.18
30 28 0.62
31 9 0.20
ACGTcount: A:0.65, C:0.00, G:0.22, T:0.13
Consensus pattern (31 bp):
AAAAAGAAAATGAAAAAGAAATATGAGAGTG
Found at i:6112352 original size:30 final size:30
Alignment explanation
Indices: 6112318--6112414 Score: 97
Period size: 30 Copynumber: 3.2 Consensus size: 30
6112308 AGCTCACTCC
6112318 TAGCTCATA-TTCAGCTCACGAGCTAAACCT
1 TAGCTCA-ACTTCAGCTCACGAGCTAAACCT
* * * * *
6112348 TAGCTCAACTTCAGCTTAGGAGTTTAATCT
1 TAGCTCAACTTCAGCTCACGAGCTAAACCT
* * * *
6112378 CAACTCAACTTTAGCTCACGAGCTAAAGCT
1 TAGCTCAACTTCAGCTCACGAGCTAAACCT
6112408 TAGCTCA
1 TAGCTCA
6112415 TTTTAGTTTA
Statistics
Matches: 51, Mismatches: 15, Indels: 2
0.75 0.22 0.03
Matches are distributed among these distances:
29 1 0.02
30 50 0.98
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.29
Consensus pattern (30 bp):
TAGCTCAACTTCAGCTCACGAGCTAAACCT
Found at i:6129854 original size:40 final size:40
Alignment explanation
Indices: 6129805--6130012 Score: 253
Period size: 40 Copynumber: 5.2 Consensus size: 40
6129795 CAGAATTTAA
* *
6129805 CCGGATATAGCT-ACTCGCTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
6129845 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
6129885 CCGGATTTAGTAACTCGCACCAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
6129924 CCAGA-ATTAGTAACTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
6129964 CCGGATATAGTCACTTAGCACAAAAGCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
6130005 CCGGATAT
1 CCGGATAT
6130013 CATTCGAATA
Statistics
Matches: 144, Mismatches: 17, Indels: 13
0.83 0.10 0.07
Matches are distributed among these distances:
38 2 0.01
39 32 0.22
40 79 0.55
41 28 0.19
42 3 0.02
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:6129937 original size:79 final size:78
Alignment explanation
Indices: 6129801--6130012 Score: 241
Period size: 79 Copynumber: 2.7 Consensus size: 78
6129791 CCTTCAGAAT
* * **
6129801 TTAACCGGATATAGCTACTCGCTCAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACA
1 TTAACCGGATATAG-TACTCGCACAAATGCCTTCGGGACTTAGCCCGAATATAGTAACTCGCACA
6129866 AATGCCTTCGGGA-C
65 AATGCCTTC-GGATC
* *
6129880 TTAACCCGGATTTAGTAACTCGCACCAATGCCTTCGGG-CTTAGCCCAGAAT-TAGTAACTCGCA
1 TTAA-CCGGATATAGT-ACTCGCACAAATGCCTTCGGGACTTAGCCC-GAATATAGTAACTCGCA
6129943 CAAATGCCTTCGGATC
63 CAAATGCCTTCGGATC
* * * *
6129959 TTAGTCCGGATATAGTCACTTAGCACAAAAGCCTTCGGGACTTAGCCCGGATAT
1 TTA-ACCGGATATAGT-AC-TCGCACAAATGCCTTCGGGACTTAGCCCGAATAT
6130013 CATTCGAATA
Statistics
Matches: 112, Mismatches: 13, Indels: 14
0.81 0.09 0.10
Matches are distributed among these distances:
78 3 0.03
79 51 0.46
80 49 0.44
81 9 0.08
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.25
Consensus pattern (78 bp):
TTAACCGGATATAGTACTCGCACAAATGCCTTCGGGACTTAGCCCGAATATAGTAACTCGCACAA
ATGCCTTCGGATC
Found at i:6132334 original size:15 final size:15
Alignment explanation
Indices: 6132314--6132369 Score: 78
Period size: 15 Copynumber: 3.7 Consensus size: 15
6132304 GTATCTTGGG
6132314 TTTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
6132329 TTTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
**
6132344 TTTCGCTA-TCTTGGA
1 TTTCTTTATTC-TGGA
6132359 TTTCTTTATTC
1 TTTCTTTATTC
6132370 GGTTTCCTTG
Statistics
Matches: 35, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
14 2 0.06
15 31 0.89
16 2 0.06
ACGTcount: A:0.12, C:0.16, G:0.12, T:0.59
Consensus pattern (15 bp):
TTTCTTTATTCTGGA
Found at i:6134816 original size:46 final size:45
Alignment explanation
Indices: 6134763--6134938 Score: 212
Period size: 46 Copynumber: 3.8 Consensus size: 45
6134753 TATTTGGGCA
6134763 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
*** * *
6134809 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAG-GCA-
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGAAG
*
6134856 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* *
6134902 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
6134939 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 12, Indels: 14
0.81 0.09 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 1 0.01
46 69 0.62
47 32 0.29
48 1 0.01
49 3 0.03
50 1 0.01
ACGTcount: A:0.21, C:0.21, G:0.30, T:0.28
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAG
Found at i:6134918 original size:93 final size:93
Alignment explanation
Indices: 6134759--6134930 Score: 308
Period size: 93 Copynumber: 1.8 Consensus size: 93
6134749 AGGATATTTG
* *
6134759 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
6134824 TTGAGTCCGAGTTCGAGAGATGTAACTA
66 TTGAGTCCGAGTTCGAGAGATGTAACTA
* *
6134852 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
6134917 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
6134931 ACTTATGGGC
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.27
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGAGAGATGTAACTA
Found at i:6141859 original size:146 final size:146
Alignment explanation
Indices: 6141590--6142174 Score: 1143
Period size: 146 Copynumber: 4.0 Consensus size: 146
6141580 AACACAAGCC
6141590 ACAAAGCACTAAAGACAATAGGTATCAACTCAATATAAGCCATGTACATTTAGAACAACAGTTTA
1 ACAAAGCACTAAAGACAATAGGTATCAACTCAATATAAGCCATGTACATTTAGAACAACAGTTTA
*
6141655 GTACAACCCTTGCATTCAAGTGAACAAGCATATTTTTTACCTAATACATTTGAGTGCTCTAGTTT
66 GTACAACCCTTGCATTCAAGTGAACAAGCATATTTTTTACCTAATACATTTGACTGCTCTAGTTT
6141720 TACTGCAAATAGTCGT
131 TACTGCAAATAGTCGT
6141736 ACAAAGCACTAAAGACAATAGGTATCAACTCAATATAAGCCATGTACATTTAGAACAACAGTTTA
1 ACAAAGCACTAAAGACAATAGGTATCAACTCAATATAAGCCATGTACATTTAGAACAACAGTTTA
6141801 GTACAACCCTTGCATTCAAGTGAACAAGCATATTTTTTACCTAATACATTTGACTGCTCTAGTTT
66 GTACAACCCTTGCATTCAAGTGAACAAGCATATTTTTTACCTAATACATTTGACTGCTCTAGTTT
6141866 TACTGCAAATAGTCGT
131 TACTGCAAATAGTCGT
6141882 ACAAAGCACTAAAGACAATAGGTATCAACTCAATATAAGCCATGTACATTTAGAACAACAGTTTA
1 ACAAAGCACTAAAGACAATAGGTATCAACTCAATATAAGCCATGTACATTTAGAACAACAGTTTA
6141947 GTACAACCCTTGCATTCAAGTGAACAAGCATATTTTTTACCTAATACATTTGACTGCTCTAGTTT
66 GTACAACCCTTGCATTCAAGTGAACAAGCATATTTTTTACCTAATACATTTGACTGCTCTAGTTT
6142012 TACTGCAAATAGTCGT
131 TACTGCAAATAGTCGT
6142028 ACAAAGCACTAAAGACAATAGGTATCAACTCAATATAAGCCATGTACATTTAGAACAACAGTTTA
1 ACAAAGCACTAAAGACAATAGGTATCAACTCAATATAAGCCATGTACATTTAGAACAACAGTTTA
* *
6142093 GTACAACCCTTGCATTCAAGTGAACAAGCATATTTTTTACCTAATACATTTGAGTGCTCTATTTT
66 GTACAACCCTTGCATTCAAGTGAACAAGCATATTTTTTACCTAATACATTTGACTGCTCTAGTTT
6142158 TACTGCAAATAGTCGT
131 TACTGCAAATAGTCGT
6142174 A
1 A
6142175 GACATGCACA
Statistics
Matches: 436, Mismatches: 3, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
146 436 1.00
ACGTcount: A:0.37, C:0.19, G:0.13, T:0.30
Consensus pattern (146 bp):
ACAAAGCACTAAAGACAATAGGTATCAACTCAATATAAGCCATGTACATTTAGAACAACAGTTTA
GTACAACCCTTGCATTCAAGTGAACAAGCATATTTTTTACCTAATACATTTGACTGCTCTAGTTT
TACTGCAAATAGTCGT
Found at i:6145910 original size:23 final size:22
Alignment explanation
Indices: 6145875--6145921 Score: 67
Period size: 23 Copynumber: 2.1 Consensus size: 22
6145865 ATACATAAAC
6145875 TAATAACAAAATATATATACTAT
1 TAATAACAAAATATATA-ACTAT
* *
6145898 TAATAATATAATATATAACTAT
1 TAATAACAAAATATATAACTAT
6145920 TA
1 TA
6145922 GTAAAAATAT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
22 7 0.32
23 15 0.68
ACGTcount: A:0.55, C:0.06, G:0.00, T:0.38
Consensus pattern (22 bp):
TAATAACAAAATATATAACTAT
Found at i:6145944 original size:30 final size:30
Alignment explanation
Indices: 6145908--6146041 Score: 268
Period size: 30 Copynumber: 4.5 Consensus size: 30
6145898 TAATAATATA
6145908 ATATATAACTATTAGTAAAAATATTAATAC
1 ATATATAACTATTAGTAAAAATATTAATAC
6145938 ATATATAACTATTAGTAAAAATATTAATAC
1 ATATATAACTATTAGTAAAAATATTAATAC
6145968 ATATATAACTATTAGTAAAAATATTAATAC
1 ATATATAACTATTAGTAAAAATATTAATAC
6145998 ATATATAACTATTAGTAAAAATATTAATAC
1 ATATATAACTATTAGTAAAAATATTAATAC
6146028 ATATATAACTATTA
1 ATATATAACTATTA
6146042 TCATAATATA
Statistics
Matches: 104, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 104 1.00
ACGTcount: A:0.53, C:0.07, G:0.03, T:0.37
Consensus pattern (30 bp):
ATATATAACTATTAGTAAAAATATTAATAC
Found at i:6145950 original size:18 final size:18
Alignment explanation
Indices: 6145929--6146041 Score: 73
Period size: 18 Copynumber: 7.3 Consensus size: 18
6145919 TTAGTAAAAA
6145929 TATTAATACATATATAAC
1 TATTAATACATATATAAC
*
6145947 TATTAGT--A-A-A-AA-
1 TATTAATACATATATAAC
6145959 TATTAATACATATATAAC
1 TATTAATACATATATAAC
*
6145977 TATTAGT--A-A-A-AA-
1 TATTAATACATATATAAC
6145989 TATTAATACATATATAAC
1 TATTAATACATATATAAC
*
6146007 TATTAGT--A-A-A-AA-
1 TATTAATACATATATAAC
6146019 TATTAATACATATATAAC
1 TATTAATACATATATAAC
6146037 TATTA
1 TATTA
6146042 TCATAATATA
Statistics
Matches: 71, Mismatches: 6, Indels: 36
0.63 0.05 0.32
Matches are distributed among these distances:
12 18 0.25
13 6 0.08
14 6 0.08
15 6 0.08
16 6 0.08
17 6 0.08
18 23 0.32
ACGTcount: A:0.52, C:0.07, G:0.03, T:0.38
Consensus pattern (18 bp):
TATTAATACATATATAAC
Found at i:6149386 original size:17 final size:17
Alignment explanation
Indices: 6149364--6149397 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
6149354 CAAAACTAGT
*
6149364 TAAACTAATCCACCTAA
1 TAAACTAATCAACCTAA
6149381 TAAACTAATCAACCTAA
1 TAAACTAATCAACCTAA
6149398 ATTAACCTAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.50, C:0.26, G:0.00, T:0.24
Consensus pattern (17 bp):
TAAACTAATCAACCTAA
Found at i:6149830 original size:122 final size:122
Alignment explanation
Indices: 6149613--6149855 Score: 468
Period size: 122 Copynumber: 2.0 Consensus size: 122
6149603 CAGAATTTTA
6149613 ATTTTATGAACAGGTGATGCAATTGGCGTTTGGGCTTTTAAGAGTAAAGGGGTAAAAGATGACAC
1 ATTTTATGAACAGGTGATGCAATTGGCGTTTGGGCTTTTAAGAGTAAAGGGGTAAAAGATGACAC
* *
6149678 AAAAAGGAGTGTGGTGTAGTGGCAAGGTGGCGCCACTTAGGGGACAAGGAAGTGACG
66 AAAAAGGAGTGTGGTGTAGTGGCAAGGTGGCACCACTTAGGGGACAAAGAAGTGACG
6149735 ATTTTATGAACAGGTGATGCAATTGGCGTTTGGGCTTTTAAGAGTAAAGGGGTAAAAGATGACAC
1 ATTTTATGAACAGGTGATGCAATTGGCGTTTGGGCTTTTAAGAGTAAAGGGGTAAAAGATGACAC
6149800 AAAAAGGAGTGTGGTGTAGTGGCAAGGTGGCACCACTTAGGGGACAAAGAAGTGAC
66 AAAAAGGAGTGTGGTGTAGTGGCAAGGTGGCACCACTTAGGGGACAAAGAAGTGAC
6149856 ACCATAGAGG
Statistics
Matches: 119, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
122 119 1.00
ACGTcount: A:0.32, C:0.11, G:0.34, T:0.23
Consensus pattern (122 bp):
ATTTTATGAACAGGTGATGCAATTGGCGTTTGGGCTTTTAAGAGTAAAGGGGTAAAAGATGACAC
AAAAAGGAGTGTGGTGTAGTGGCAAGGTGGCACCACTTAGGGGACAAAGAAGTGACG
Found at i:6151219 original size:26 final size:27
Alignment explanation
Indices: 6151190--6151249 Score: 77
Period size: 27 Copynumber: 2.3 Consensus size: 27
6151180 CCACATATAT
*
6151190 ATATCTGT-TCTGGTGGCCTAGCCACA
1 ATATCTGTATCTGGTGACCTAGCCACA
* * *
6151216 ATATCTGTATCTGGTGACTTCGTCACA
1 ATATCTGTATCTGGTGACCTAGCCACA
6151243 ATATCTG
1 ATATCTG
6151250 GCAGCCTCGC
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 8 0.28
27 21 0.72
ACGTcount: A:0.22, C:0.23, G:0.20, T:0.35
Consensus pattern (27 bp):
ATATCTGTATCTGGTGACCTAGCCACA
Found at i:6157487 original size:125 final size:125
Alignment explanation
Indices: 6157265--6157504 Score: 462
Period size: 125 Copynumber: 1.9 Consensus size: 125
6157255 ATAGTTTTGC
6157265 CCCTAAACTTTTGCATATTTACACTTTTGCCCCAAAGCTCGTAAATTAAACTTCAGCCTATTTTC
1 CCCTAAACTTTTGCATATTTACACTTTTGCCCCAAAGCTCGTAAATTAAACTTCAGCCTATTTTC
*
6157330 TTATGTTTTATGACATGCTGATTGTTTTTTCCTTCTATATCAACATCAAAGTAAATTAAA
66 TTATGTTTTATGACATGCTGATTATTTTTTCCTTCTATATCAACATCAAAGTAAATTAAA
*
6157390 CCCTAAACTTTTGCATATTTACACTTTTGCCCCAAAGCTCGTAAATTAAACTTCATCCTATTTTC
1 CCCTAAACTTTTGCATATTTACACTTTTGCCCCAAAGCTCGTAAATTAAACTTCAGCCTATTTTC
6157455 TTATGTTTTATGACATGCTGATTATTTTTTCCTTCTATATCAACATCAAA
66 TTATGTTTTATGACATGCTGATTATTTTTTCCTTCTATATCAACATCAAA
6157505 TTCTCACTCT
Statistics
Matches: 113, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
125 113 1.00
ACGTcount: A:0.29, C:0.22, G:0.08, T:0.42
Consensus pattern (125 bp):
CCCTAAACTTTTGCATATTTACACTTTTGCCCCAAAGCTCGTAAATTAAACTTCAGCCTATTTTC
TTATGTTTTATGACATGCTGATTATTTTTTCCTTCTATATCAACATCAAAGTAAATTAAA
Found at i:6163567 original size:20 final size:20
Alignment explanation
Indices: 6163542--6163581 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
6163532 AGACAATGTG
6163542 CTAAACACATAATTCTAGTA
1 CTAAACACATAATTCTAGTA
6163562 CTAAACACATAATTCTAGTA
1 CTAAACACATAATTCTAGTA
6163582 TGATGTATAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.45, C:0.20, G:0.05, T:0.30
Consensus pattern (20 bp):
CTAAACACATAATTCTAGTA
Found at i:6164581 original size:33 final size:34
Alignment explanation
Indices: 6164534--6164604 Score: 117
Period size: 34 Copynumber: 2.1 Consensus size: 34
6164524 TAAAGTGAAC
6164534 TACTCAGTCTAATACTAA-CAACCTAGAATCAAA
1 TACTCAGTCTAATACTAAGCAACCTAGAATCAAA
* *
6164567 TACTTAGTCTAATACTAAGCAACCTAGAATCAAT
1 TACTCAGTCTAATACTAAGCAACCTAGAATCAAA
6164601 TACT
1 TACT
6164605 ATCGAACTAA
Statistics
Matches: 35, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
33 17 0.49
34 18 0.51
ACGTcount: A:0.42, C:0.23, G:0.07, T:0.28
Consensus pattern (34 bp):
TACTCAGTCTAATACTAAGCAACCTAGAATCAAA
Found at i:6166240 original size:20 final size:20
Alignment explanation
Indices: 6166140--6166245 Score: 74
Period size: 20 Copynumber: 5.3 Consensus size: 20
6166130 AGGCACCAGA
* *
6166140 TGCAAACAGAGACAC-GATTG
1 TGCAAACAGAGGCACTGA-AG
* * *
6166160 TGCAAGCAGAGGCACCGTAG
1 TGCAAACAGAGGCACTGAAG
6166180 TGCAAACAG-GGACACTGAAG
1 TGCAAACAGAGG-CACTGAAG
* * ** *
6166200 TGTATATGGAGGCA-TATAAG
1 TGCAAACAGAGGCACT-GAAG
6166220 TGCAAACAGAGGCACTGAAG
1 TGCAAACAGAGGCACTGAAG
6166240 TGCAAA
1 TGCAAA
6166246 TCTTGTATAA
Statistics
Matches: 64, Mismatches: 17, Indels: 10
0.70 0.19 0.11
Matches are distributed among these distances:
19 3 0.05
20 57 0.89
21 4 0.06
ACGTcount: A:0.38, C:0.18, G:0.29, T:0.15
Consensus pattern (20 bp):
TGCAAACAGAGGCACTGAAG
Found at i:6176720 original size:28 final size:28
Alignment explanation
Indices: 6176688--6176789 Score: 141
Period size: 28 Copynumber: 3.6 Consensus size: 28
6176678 CAAATATGGT
* *
6176688 ACTTAGTGTATGAAATATTGAGAATGGC
1 ACTTAGTGTACGAAATATTGAGAATGAC
*
6176716 ACTTAGTGTACGAAATATTGAGAATGAA
1 ACTTAGTGTACGAAATATTGAGAATGAC
* *
6176744 ACTTAGTGTGCGAGATATTGAGAATGAC
1 ACTTAGTGTACGAAATATTGAGAATGAC
* *
6176772 ACTTAGTGTGCAAAATAT
1 ACTTAGTGTACGAAATAT
6176790 CGAATGATTC
Statistics
Matches: 66, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 66 1.00
ACGTcount: A:0.37, C:0.09, G:0.24, T:0.30
Consensus pattern (28 bp):
ACTTAGTGTACGAAATATTGAGAATGAC
Found at i:6178811 original size:31 final size:29
Alignment explanation
Indices: 6178770--6178845 Score: 143
Period size: 29 Copynumber: 2.6 Consensus size: 29
6178760 AAGTGAACAT
*
6178770 AGGCACTGTGTGTGCGAGATCGGTTGTTG
1 AGGCACTGTGTGTGCGAGATCAGTTGTTG
6178799 AGGCACTGTGTGTGCGAGATCAGTTGTTG
1 AGGCACTGTGTGTGCGAGATCAGTTGTTG
6178828 AGGCACTGTGTGTGCGAG
1 AGGCACTGTGTGTGCGAG
6178846 TTCCATAACC
Statistics
Matches: 46, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
29 46 1.00
ACGTcount: A:0.16, C:0.14, G:0.41, T:0.29
Consensus pattern (29 bp):
AGGCACTGTGTGTGCGAGATCAGTTGTTG
Found at i:6184297 original size:990 final size:985
Alignment explanation
Indices: 6182776--6186155 Score: 4158
Period size: 990 Copynumber: 3.3 Consensus size: 985
6182766 CTATATGGAC
* * * * * *
6182776 TACTTAAACATGATTAGAAGAACGAGTTTATGTTTTTGAACTATTTTGAAACTTAAAAATGAAAA
1 TACTTAAACATCATCAGAAGAATGAGTTTACGTTTTTGAACTATTTTGAAGCTCAAAAATGAAAA
*
6182841 TAAACCATTCTGTCACAGTGAATGATAACTCTTGAAAAGAGTTATAATTCATGCCTTTAGGCTGG
66 TAAACCATTCTGTCATAGTGAATGATAACTCTTGAAAAGAGTTATAATTCATGCCTTTAGGCTGG
* * * * *
6182906 ATCAATTGTCTGTACTTAAGTAAACTTAGTTGTATTTTAGGATATTATTTTAGCATTTTTAGAAC
131 GTCAATTGTTTGTACTTAAGTGAACTTAGTTGCATTTTAGGATATTATTTTAGCATTTGTAGAAC
* * * *
6182971 ATTGCATAAGAAGCTTGGA-TAATGCTTAAATATTATTATTTGTTACTTTTAATTTCTTGTGGCA
196 ATTGCAAAAGAAGCTTGGACGAGTGCTTAAATATTATTATTTGTTACTTTTAATTTCTTGTGGTA
* * ***
6183035 GGGCTGTGTTTGGTGGTTTGGTAGGTGCAGGATGTGGAGAAAGAAACAAAGGAGTGAGTGTTTGC
261 GGGCTATGTTTGGTGGTTTGGTAGGTGCAGGATATGGAGAAAGAAACAAAGGAGTGAACATTTGC
* * *
6183100 TGGGGCAAAGAGTTGGACATTTTGTCAAAATGGATACTGTGGCAATGTCGAGAAGATTGAGTCAA
326 TGGGGCAAAGAGTTGGACATTTTGCCAAAATGGAT--TGTGGCAATGTCGAGAAGACTGAGTTAA
* ** * * * *
6183165 CACTCAGCGGATGCCAGTTTCAGCCCAAATTTACTTCTACCAGAAAAAACAGCCTAAAAAATAAA
389 CACTCAACACATGCCAGTTTCAGCCCAACTTTACTTGTACCAGAAAAATCAGCCTAAAAAAT-AG
*
6183230 AGATGATAATATTGGGTTGTTGAAAAAAGAATTTAAATAGAGGAGAAGATAAATATGGGTTTCTG
453 AGAAGATAATATTGGGTTGTTG-AAAAAGAATTTAAATAGAGGAGAAGATAAATATGGGTTT-TG
* *
6183295 GATTTA-CCTAGGAAAAAGGCTATAAAAAGCCAACTAAGGAAACACTAAACGACGAACAAAAAAG
516 GATTTACCCTAGGAAAAAAGCTATAAAAAGCCAACTGAGGAAACACTAAACGACGAACAAAAAAG
* ** * * * * *
6183359 TAGGAGAGATCCTTACACGTGAATAAGGGTTTGGCTACGTAAGAGTAAGAAAGTCGAAGGCAATC
581 TGGGAGAGATCCTTAGGCGTGAATAAGGGTTTGGCTATGTAAGGGAAAGAAAGTCGAAGACAGTC
* * *
6183424 CTTCTTAGCCATAACAAGATGTTATGCTGCCAAAGTCTGGACTGCGCAAGCGATAGCTGTTTCCC
646 CTTCTTAGCCATAACAAGATGTT-TGCTGCCAAAGTGTGGACTGGGCAAGCGAAAGCTGTTTCCC
* * *
6183489 AAAGTTCTTTTATTATTTCCATTAGTGTTCCTTCGAAAGATTGAATTGAAGTAGATAAGCACAAC
710 AAAGTTCTTTTGTTATTTCCATTAGTGTTCCTTCGAAAGATTGAATTGAAGTAGTTAA-CACAAT
* * * *
6183554 GTCAGATAATATTTTGGTTTGGAATTTTATTTCTCAACCCATTAGCCAAATATCATAAGGTTGGG
774 TTCAGATAATATTTTGGTTTGGAATTTTATTTCTCAGCCCATGAGCCAAATCTCATAAGGTTGGG
*
6183619 ATTACTTTCAATGAAACCTTAAACTATTTTTATGGATGCATTATATATCTAATTTACTTTACTGT
839 ATTACTTTCAATGAAACCTTAAACTATTTTTATGGATGCAGTATATATCTAATTTACTTTACTGT
6183684 TTCATTTGATTGTTCTTATTACTTAATAAAAATGGAAATGATCTCTAGACATAAAAGACTGTTCA
904 TTCATTTGATTGTTCTTATTACTTAATAAAAATGGAAATGATCTCTAGACATAAAAGACTGTTCA
6183749 CATACTTATAAACTGAT
969 CATACTTATAAACTGAT
*
6183766 TACTTAAACATCATCAGAAGAATGATTTTACGTTTTTGAACTATTTTGAAGCTCAAAAATGAAAA
1 TACTTAAACATCATCAGAAGAATGAGTTTACGTTTTTGAACTATTTTGAAGCTCAAAAATGAAAA
* * *
6183831 TAAACCGTTCTGTCATAGTGAATGATAACTCTTGAAAATAGTTATAATTCATGCCTGTAGGCTGG
66 TAAACCATTCTGTCATAGTGAATGATAACTCTTGAAAAGAGTTATAATTCATGCCTTTAGGCTGG
6183896 GTCAATTGTTTGTACTTAAGTGAACTTAGTTGCATTTTAGGATATTATTTTAGCATTTGTAGAAC
131 GTCAATTGTTTGTACTTAAGTGAACTTAGTTGCATTTTAGGATATTATTTTAGCATTTGTAGAAC
*
6183961 TTTGCAAAAGAAGCTTGGACGA-TGCTTAAATATTATTATTTGTTACTTTTAATTTCTTGTGGTA
196 ATTGCAAAAGAAGCTTGGACGAGTGCTTAAATATTATTATTTGTTACTTTTAATTTCTTGTGGTA
* * *
6184025 GGGCTATGTTTGGTGGTTTGGTAGGTGTAGGATATGGAGAAAGAAACAAAGGAGTAAACGTTTGC
261 GGGCTATGTTTGGTGGTTTGGTAGGTGCAGGATATGGAGAAAGAAACAAAGGAGTGAACATTTGC
* *
6184090 TGGGGCAAAGAGTTAGACATTTTGCCAAATTGGATGTTGTGGCAATGTCGAGAAGACTGAGTTAA
326 TGGGGCAAAGAGTTGGACATTTTGCCAAAATGGA--TTGTGGCAATGTCGAGAAGACTGAGTTAA
** * * *
6184155 CACTCAACTTATGCTAGTTTCAGTCCAACTTTACTTGTACCAGAAAAATCCGCCTAAAAAATAGT
389 CACTCAACACATGCCAGTTTCAGCCCAACTTTACTTGTACCAGAAAAATCAGCCTAAAAAATAG-
* * *
6184220 AGAAGGTAAT-TTGGGTTATTGAGAAAAGAATTTAAATAGAGGAGAATATAAATATGGGTTTTGG
453 AGAAGATAATATTGGGTTGTTGA-AAAAGAATTTAAATAGAGGAGAAGATAAATATGGGTTTT-G
*
6184284 GATTTACCCTAGGAAAAAAGCTATAAAAAGCCAACTGAGGAAACAGTAAACGACGAAC-AAAAAG
516 GATTTACCCTAGGAAAAAAGCTATAAAAAGCCAACTGAGGAAACACTAAACGACGAACAAAAAAG
** *
6184348 TGGGAGAGATCCTTAGGCGTGAATAACAGTTTGGCTATGTAAGGGAAAGAAAGTCGAACACAGTC
581 TGGGAGAGATCCTTAGGCGTGAATAAGGGTTTGGCTATGTAAGGGAAAGAAAGTCGAAGACAGTC
*
6184413 CTTCTTAGCCATAACAAGACATGTTT-CTG--AAA-TGTGGACTGGGCAAGCGAAAGCTGTTTAC
646 CTTCTTAGCCATAACAAG--ATGTTTGCTGCCAAAGTGTGGACTGGGCAAGCGAAAGCTGTTTCC
6184474 CAAAGTTCTTTTGTTATTTCCATTAGTGTTCCTTCGAAAGATTGAATTGAAGTAGTTAAACACAA
709 CAAAGTTCTTTTGTTATTTCCATTAGTGTTCCTTCGAAAGATTGAATTGAAGTAGTT-AACACAA
*
6184539 TTTCGGATAATATTTTGGTTTGGAATTTTATTTCTCAGCCCATGAGCCAAATCTCATAAGGTTGG
773 TTTCAGATAATATTTTGGTTTGGAATTTTATTTCTCAGCCCATGAGCCAAATCTCATAAGGTTGG
6184604 GATTACTTTCAATGAAACCTTAAACTATTTTTATGGATGCAGTATATATCTAATTTACTTTACTG
838 GATTACTTTCAATGAAACCTTAAACTATTTTTATGGATGCAGTATATATCTAATTTACTTTACTG
6184669 TTTCATTTGATTGTTCTTATTACTTAATAAAAATGGAAATGATCTCTAGACATAAAAGACTGTTC
903 TTTCATTTGATTGTTCTTATTACTTAATAAAAATGGAAATGATCTCTAGACATAAAAGACTGTTC
6184734 ACATACTTATAAACTGAT
968 ACATACTTATAAACTGAT
*
6184752 TACTTAAACATCATCAGAAGAATGATTTTACGTTTTTGAACTATTTTGAAGCTCAAAAATGAAAA
1 TACTTAAACATCATCAGAAGAATGAGTTTACGTTTTTGAACTATTTTGAAGCTCAAAAATGAAAA
* ** * *
6184817 TAAACCTTGATTACT-TAAACATAATCAGAAGAATGAGTTTATGTTTTTGAACTATTTTGAAGCT
66 TAAACC---ATT-CTGT---C---AT-AG-TGAATGA---TA-ACTCTTGAA--A---AG-AG-T
* * * * * ** * ** ** *
6184881 TAAAACTTAAAATAAACCATT---CT--GTCATAGTGAATGAAAACTCTTGAAAAGAGTTATAAT
108 TATAA-TT--CAT--GCCTTTAGGCTGGGTCA-ATTGTTTG--TA--CTT-AAGTGAACT-TAGT
* * * * *
6184941 T-CATGCCTTTAGGTTAGGTCAATTGTTTGTATTTAAGT-GAACTTAGTTTCATTTTAGGATATT
161 TGCAT---TTTAGGATA--T-TATT-TTAGCATTT--GTAG-A---A----CA--TT-GCA-A--
*
6185004 ATTTTAGCATTTTTAGAACATTGCGTAAGAAGCTTGGACAGTGCTTAAATATTATTATTTGCTAC
203 A----AG-A-----AG--C-TT--G---G-A-C---G--AGTGCTTAAATATTATTATTTGTTAC
* ** *
6185069 TTTTAATTTCTTGTGGTAGGGCTATGGTTGGTGGTTTGGTAGGTGTTGTATATGGAGAAAGAAAC
243 TTTTAATTTCTTGTGGTAGGGCTATGTTTGGTGGTTTGGTAGGTGCAGGATATGGAGAAAGAAAC
* ** *
6185134 AAAGGAGTGAACATTTGCTAGGGTGAATAGTTGGACATTTTGCCAAAATGGA-TGTGGCAATGTC
308 AAAGGAGTGAACATTTGCTGGGGCAAAGAGTTGGACATTTTGCCAAAATGGATTGTGGCAATGTC
* * * * * * *
6185198 -AGGAAGACTAAGTTAACACTTAACACAAGCCAGTTTTAGGCCAACTTTACTTGCACCAAAAAAA
373 GA-GAAGACTGAGTTAACACTCAACACATGCCAGTTTCAGCCCAACTTTACTTGTACCAGAAAAA
* * * *
6185262 TCTA-CCTAAAAAATAGAGAAGATAATCTTAGTTTGTTGAAAAAGGAATTTAAATATAGGAGAAG
437 TC-AGCCTAAAAAATAGAGAAGATAATATTGGGTTGTTGAAAAA-GAATTTAAATAGAGGAGAAG
*
6185326 ATAAACATGGGTTTTTGGATTTACCCTAGGAAAAAAGCTATAAAAAGCCAACTGAGGAAACACTA
500 ATAAATATGGG-TTTTGGATTTACCCTAGGAAAAAAGCTATAAAAAGCCAACTGAGGAAACACTA
* *
6185391 AACGACAAAAAACAAAAAGTGGGAGAGATCCTTAGGCGTGAATAAGGGTTTGGCTATGTAAGGGA
564 AACGAC-GAACA-AAAAAGTGGGAGAGATCCTTAGGCGTGAATAAGGGTTTGGCTATGTAAGGGA
* * * *
6185456 AAGAAAGTCGAAGACAGTCCTTCTTAGCCATCACAAGATGTTGTGTTTCCGAAGTGTGGACTGGG
627 AAGAAAGTCGAAGACAGTCCTTCTTAGCCATAACAAGATGTT-TGCTGCCAAAGTGTGGACTGGG
* * * *
6185521 TAAGCGAAAGCTATTTCCCAAAGTTGTTTTGTTATTTCCATCAGTGTTCCTTCGAAAGATTGAAT
691 CAAGCGAAAGCTGTTTCCCAAAGTTCTTTTGTTATTTCCATTAGTGTTCCTTCGAAAGATTGAAT
** * *
6185586 CAAAGTAGTTGAACACAATTTCAGATAATATTTTGGTTTGGAATTTTATTT-TCCAGCCGATGAT
756 TGAAGTAGTT-AACACAATTTCAGATAATATTTTGGTTTGGAATTTTATTTCT-CAGCCCATGAG
* * *
6185650 CTAAATCTCATAAGGTTGGGATTACTTTCAATCAAACCTTCAACTATTTTTATGGATGCAGTATA
819 CCAAATCTCATAAGGTTGGGATTACTTTCAATGAAACCTTAAACTATTTTTATGGATGCAGTATA
* * * * * *
6185715 TATCTAATTTACTTTACTGTTTCATTCGATTGTTCTTATTTCTTAATTAAAATGCAAAAGATCTT
884 TATCTAATTTACTTTACTGTTTCATTTGATTGTTCTTATTACTTAATAAAAATGGAAATGATCTC
* **
6185780 TAGACATAGAAGACTGTTCGTATACTTATAAACTGAT
949 TAGACATAAAAGACTGTTCACATACTTATAAACTGAT
* * * * * * * *
6185817 TACTTAAATATGACCAGATGAATGAGTTTATGTTTTTGAACTATTTTGAAGCTTAAAACTTAAAA
1 TACTTAAACATCATCAGAAGAATGAGTTTACGTTTTTGAACTATTTTGAAGCTCAAAAATGAAAA
* * *
6185882 TAAACCATTCTGTCATAGTGAATGAAAACTCTTGAAAAGAGTTATAATTCATGCCTTTAGGTTAG
66 TAAACCATTCTGTCATAGTGAATGATAACTCTTGAAAAGAGTTATAATTCATGCCTTTAGGCTGG
* * *
6185947 GTCAATTGTTTGTATTTAAGTGAACTTAGTTTCATTTTAGGATATTATTTTAGCATTTTTAGAAC
131 GTCAATTGTTTGTACTTAAGTGAACTTAGTTGCATTTTAGGATATTATTTTAGCATTTGTAGAAC
**
6186012 ATTGCGTAAGAAGCTTGGAC-AGTGCTTAAATATTATTATTTGTTACTTTTAATTTCTTGTGGTA
196 ATTGCAAAAGAAGCTTGGACGAGTGCTTAAATATTATTATTTGTTACTTTTAATTTCTTGTGGTA
*
6186076 GGGCTATGTTTGGTGGTTTGGTAGGTGCAGGATATGGAGAAAGAATCAAAGGAGTGAACATTTGC
261 GGGCTATGTTTGGTGGTTTGGTAGGTGCAGGATATGGAGAAAGAAACAAAGGAGTGAACATTTGC
6186141 TGGGGCAAAGAGTTG
326 TGGGGCAAAGAGTTG
6186156 TAATTTTTTG
Statistics
Matches: 2064, Mismatches: 210, Indels: 233
0.82 0.08 0.09
Matches are distributed among these distances:
986 362 0.18
987 5 0.00
988 2 0.00
989 253 0.12
990 465 0.23
991 6 0.00
992 2 0.00
995 3 0.00
996 3 0.00
997 7 0.00
1000 3 0.00
1001 6 0.00
1002 2 0.00
1003 2 0.00
1005 2 0.00
1007 2 0.00
1008 9 0.00
1009 7 0.00
1010 3 0.00
1011 5 0.00
1013 6 0.00
1014 8 0.00
1015 5 0.00
1017 8 0.00
1018 1 0.00
1019 3 0.00
1020 3 0.00
1021 9 0.00
1022 1 0.00
1023 3 0.00
1025 1 0.00
1026 1 0.00
1028 2 0.00
1029 1 0.00
1030 8 0.00
1031 3 0.00
1032 3 0.00
1033 2 0.00
1034 9 0.00
1036 5 0.00
1037 8 0.00
1038 6 0.00
1040 5 0.00
1041 2 0.00
1042 7 0.00
1043 9 0.00
1044 2 0.00
1045 1 0.00
1046 2 0.00
1048 2 0.00
1049 2 0.00
1050 6 0.00
1051 2 0.00
1054 7 0.00
1055 3 0.00
1056 3 0.00
1058 14 0.01
1059 171 0.08
1060 11 0.01
1061 4 0.00
1062 219 0.11
1064 3 0.00
1065 344 0.17
ACGTcount: A:0.34, C:0.13, G:0.20, T:0.34
Consensus pattern (985 bp):
TACTTAAACATCATCAGAAGAATGAGTTTACGTTTTTGAACTATTTTGAAGCTCAAAAATGAAAA
TAAACCATTCTGTCATAGTGAATGATAACTCTTGAAAAGAGTTATAATTCATGCCTTTAGGCTGG
GTCAATTGTTTGTACTTAAGTGAACTTAGTTGCATTTTAGGATATTATTTTAGCATTTGTAGAAC
ATTGCAAAAGAAGCTTGGACGAGTGCTTAAATATTATTATTTGTTACTTTTAATTTCTTGTGGTA
GGGCTATGTTTGGTGGTTTGGTAGGTGCAGGATATGGAGAAAGAAACAAAGGAGTGAACATTTGC
TGGGGCAAAGAGTTGGACATTTTGCCAAAATGGATTGTGGCAATGTCGAGAAGACTGAGTTAACA
CTCAACACATGCCAGTTTCAGCCCAACTTTACTTGTACCAGAAAAATCAGCCTAAAAAATAGAGA
AGATAATATTGGGTTGTTGAAAAAGAATTTAAATAGAGGAGAAGATAAATATGGGTTTTGGATTT
ACCCTAGGAAAAAAGCTATAAAAAGCCAACTGAGGAAACACTAAACGACGAACAAAAAAGTGGGA
GAGATCCTTAGGCGTGAATAAGGGTTTGGCTATGTAAGGGAAAGAAAGTCGAAGACAGTCCTTCT
TAGCCATAACAAGATGTTTGCTGCCAAAGTGTGGACTGGGCAAGCGAAAGCTGTTTCCCAAAGTT
CTTTTGTTATTTCCATTAGTGTTCCTTCGAAAGATTGAATTGAAGTAGTTAACACAATTTCAGAT
AATATTTTGGTTTGGAATTTTATTTCTCAGCCCATGAGCCAAATCTCATAAGGTTGGGATTACTT
TCAATGAAACCTTAAACTATTTTTATGGATGCAGTATATATCTAATTTACTTTACTGTTTCATTT
GATTGTTCTTATTACTTAATAAAAATGGAAATGATCTCTAGACATAAAAGACTGTTCACATACTT
ATAAACTGAT
Found at i:6184874 original size:76 final size:76
Alignment explanation
Indices: 6184748--6184898 Score: 248
Period size: 76 Copynumber: 2.0 Consensus size: 76
6184738 ACTTATAAAC
* *
6184748 TGATTACTTAAACATCATCAGAAGAATGATTTTACGTTTTTGAACTATTTTGAAGCTCAAAAATG
1 TGATTACTTAAACATAATCAGAAGAATGAGTTTACGTTTTTGAACTATTTTGAAGCTCAAAAATG
6184813 AAAATAAACCT
66 AAAATAAACCT
* * * *
6184824 TGATTACTTAAACATAATCAGAAGAATGAGTTTATGTTTTTGAACTATTTTGAAGCTTAAAACTT
1 TGATTACTTAAACATAATCAGAAGAATGAGTTTACGTTTTTGAACTATTTTGAAGCTCAAAAATG
6184889 AAAATAAACC
66 AAAATAAACC
6184899 ATTCTGTCAT
Statistics
Matches: 69, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
76 69 1.00
ACGTcount: A:0.41, C:0.12, G:0.12, T:0.35
Consensus pattern (76 bp):
TGATTACTTAAACATAATCAGAAGAATGAGTTTACGTTTTTGAACTATTTTGAAGCTCAAAAATG
AAAATAAACCT
Found at i:6186320 original size:207 final size:207
Alignment explanation
Indices: 6185950--6186362 Score: 754
Period size: 207 Copynumber: 2.0 Consensus size: 207
6185940 AGGTTAGGTC
* * *
6185950 AATTGTTTGTATTTAAGTGAACTTAGTTTCATTTTAGGATATTATTTTAGCATTTTTAGAACATT
1 AATTGTTTGTACTTAAGTGAACTTAGTTGCATTTTAGGATATTATTTTAGCAATTTTAGAACATT
*
6186015 GCGTAAGAAGCTTGGACAGTGCTTAAATATTATTATTTGTTACTTTTAATTTCTTGTGGTAGGGC
66 GCATAAGAAGCTTGGACAGTGCTTAAATATTATTATTTGTTACTTTTAATTTCTTGTGGTAGGGC
6186080 TATGTTTGGTGGTTTGGTAGGTGCAGGATATGGAGAAAGAATCAAAGGAGTGAACATTTGCTGGG
131 TATGTTTGGTGGTTTGGTAGGTGCAGGATATGGAGAAAGAATCAAAGGAGTGAACATTTGCTGGG
6186145 GCAAAGAGTTGT
196 GCAAAGAGTTGT
* * * *
6186157 AATTTTTTGTACTTCAGTGAACTTAGTTGCATTTTAGGATTTTATTTTAGCAATTTTAGAATATT
1 AATTGTTTGTACTTAAGTGAACTTAGTTGCATTTTAGGATATTATTTTAGCAATTTTAGAACATT
6186222 GCATAAGAAGCTTGGACAGTGCTTAAATATTATTATTTGTTACTTTTAATTTCTTGTGGTAGGGC
66 GCATAAGAAGCTTGGACAGTGCTTAAATATTATTATTTGTTACTTTTAATTTCTTGTGGTAGGGC
6186287 TATGTTTGGTGGTTTGGTAGGTGCAGGATATGGAGAAAGAATCAAAGGAGTGAACATTTGCTGGG
131 TATGTTTGGTGGTTTGGTAGGTGCAGGATATGGAGAAAGAATCAAAGGAGTGAACATTTGCTGGG
6186352 GCAAAGAGTTG
196 GCAAAGAGTTG
6186363 GACATTTTGC
Statistics
Matches: 198, Mismatches: 8, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
207 198 1.00
ACGTcount: A:0.28, C:0.08, G:0.25, T:0.39
Consensus pattern (207 bp):
AATTGTTTGTACTTAAGTGAACTTAGTTGCATTTTAGGATATTATTTTAGCAATTTTAGAACATT
GCATAAGAAGCTTGGACAGTGCTTAAATATTATTATTTGTTACTTTTAATTTCTTGTGGTAGGGC
TATGTTTGGTGGTTTGGTAGGTGCAGGATATGGAGAAAGAATCAAAGGAGTGAACATTTGCTGGG
GCAAAGAGTTGT
Found at i:6187435 original size:54 final size:53
Alignment explanation
Indices: 6187376--6187478 Score: 145
Period size: 53 Copynumber: 1.9 Consensus size: 53
6187366 AGATTGATGT
* * *
6187376 TGTGGCAATGTC-AGGAAGACTGAGTTAACACTCAATGCATGCCAGTTTCAATGC
1 TGTGGCAATGTCGA-GAAGACTGA-TAAACACTCAACGCATGCCAATTTCAATGC
*
6187430 TGTGGCAATGTCGAGAAGACTGATAAACACTCAACGCTTGCCAATTTCA
1 TGTGGCAATGTCGAGAAGACTGATAAACACTCAACGCATGCCAATTTCA
6187479 GCCCAACTAT
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
53 22 0.50
54 21 0.48
55 1 0.02
ACGTcount: A:0.31, C:0.21, G:0.22, T:0.25
Consensus pattern (53 bp):
TGTGGCAATGTCGAGAAGACTGATAAACACTCAACGCATGCCAATTTCAATGC
Found at i:6193116 original size:15 final size:15
Alignment explanation
Indices: 6193093--6193123 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
6193083 TCAAAAATTC
6193093 CAATACAAAACATAT
1 CAATACAAAACATAT
*
6193108 CAATCCAAAACATAT
1 CAATACAAAACATAT
6193123 C
1 C
6193124 TTTCATATTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.55, C:0.26, G:0.00, T:0.19
Consensus pattern (15 bp):
CAATACAAAACATAT
Found at i:6193660 original size:14 final size:15
Alignment explanation
Indices: 6193643--6193671 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
6193633 TCACGAAAAT
6193643 TTCACACAT-ATAAA
1 TTCACACATAATAAA
6193657 TTCACACATAATAAA
1 TTCACACATAATAAA
6193672 CACATAAAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 9 0.64
15 5 0.36
ACGTcount: A:0.52, C:0.21, G:0.00, T:0.28
Consensus pattern (15 bp):
TTCACACATAATAAA
Found at i:6197247 original size:992 final size:982
Alignment explanation
Indices: 6194326--6197384 Score: 4243
Period size: 992 Copynumber: 3.1 Consensus size: 982
6194316 AAATATTAAA
* * * * * * * **
6194326 GCTACAAAAAGCTAACTGAAGAAACACTAAATGATGAACAAAAAAGTGGGAGAGAT-CCTA-A-G
1 GCTATAAAAAGCCAAATGAGGAAACACTAAACGACGAACAAAAAAGTGGGAGACATGTTTAGACG
* * * * *
6194388 -G-CTAAGGGTTTGGCTATGTAA-GGAAAGAAAGTTGAAGGAAATCCTTCTTAGCCATTACAAGA
66 TGAATAAGGGTTTGGCTACGTAAGGGAAAGAAAGTTAAAGG-CATCCTTCTTAGCCATAACAAGA
* * * * * * *
6194450 TGTTGTGCTGCCG-AGTTG-TGGGCAAGCAAAAGCTGGTTCCCAAAGTTATTTTGTTATTTTCAT
130 TGATGTGCTGCCGAAGGTGATGGGCAAGCGAAAGTTGTTTCCCAAAGTTCTTTTGTTATTTCCAT
* * * * ** *
6194513 TAGTGTTGCTTCGAAAGATTGAATTGAAGTAGTTGAACACAATGCCAGACAAAATCCTGGTTTAG
195 TAGTGTTCCTTCGAAAGATTGAATTGAAGTAGTTGAACACAATGTCAGATAATATTTTGGTTTGG
* * * *
6194578 AATTTTATTTCCCAGCCTATTAGCCAAATCTCATAAGGTTAGAAGTACTTTCAATGAAACTTTAA
260 AATTTTATTTCCCAGCCTATGAGCCAAATCTCATAAGGTTGGGATTACTTTCAATGAAAC-TT-A
* * *
6194643 ACTATCTTTATGGATGTAGTATATATCTAATTTACTTTACAATTTCATTTGATTGTTCTTATTTT
323 ACTAT-TTTATGGATGAAGTATATATCTAATTTACTTTACTATTTCATTTGATTGTTCTTATTTC
* * * * * *
6194708 TTAATTAAAATGCAAATGATCTCTAGACATAGAAGACTATTCGCATACTTATAAACTGATTACTT
387 TTAATTAGAATGCAAATGATATTTAGACATAGAAGACTGTTCACATAATTATAAACTGATTACTT
* *
6194773 AAACATGATCAGAAGAATGATTTTATGTTTTTGAACTATTTTGGAGCTTAAAAATG-AAATAAAA
452 AAACATGATCAGAAGAATGAGTTTATGTTTTTGAACTATTTTGAAGCTTAAAAATGAAAAT-AAA
* * * *
6194837 T-ATTCTGTCATAGTGAATGATAATTCTTGAAAAGAGTTATAATTCATGCCTTTAGGCTGGGTCA
516 TCATTCTGTCATAGTGAATGATTAGTCTTGAAAAGAGTTATAATTCTTGCCTTTTGGCTGGGTCA
* * * * * * *
6194901 ATTTTCTGTACATAAGTGAACTTAGTTGCATTTTAGGATA-TTATTATAGTACTTTTAGAAAATT
581 ATTGTCTGCACTTAAGTGAACTTAGTTGCAATTTAGGATACTAATT-TAGCACTTTTAGAACATT
* * * * *
6194965 GCATAAGAAGATTGGACAGTGCTTAAATATTATTATTTGTTACTTTTAATTTCTTGTGGTAGAGC
645 GTACAAGAAGATTGGATAGTGCTTAATTATTATTATTTGTTACTTTTAATTTCTTGTGGTAGGGC
* * *
6195030 TGTGTTTGGTGGT-TAGGTAGGTGCAGGATGTGGAGAAAGAAACAAAGGAGTGAACGTTTGCTGG
710 TGTGTTTGGTGGTCT-GGTTGGTGCAGGAT-TGGAAAAAGAAACAAAGGAGTGAACGTTTACTGG
** * * * *
6195094 GGCAAAGAGTTGGATGTTTTGCGAAAATGGATGCTTTGGCAATGTAGGGAAGACTGAGTTAACAC
773 GGCAAAGAGTTGGACATTTTGCCAAAATGGATG-TGTGGCAATGTCGGAAAGACTGAGTTAACAC
* * * * *
6195159 TCAGCGCATG-CAGTTTCAGCCCAACTTCACCTGTT-CCAGAAAAA-TCCGCCTAAAAAATAGGA
837 TCAACGCATGCCAATTTCAGCCCAACTTTA-CTTTTACCA-AAAAAGTCTGCCTAAAAAATAGGA
* * * * *
6195221 GAAGAAAATATTGGG-TTGTTGAAAAAAGAATTTAAATAGAGGAGATGGTAAACATGGTTTTTG-
900 GAAGAAAATATTGGGTTTGTT-AAAAAAGAATTTAAATTGAGGAGAAGATAGACATGGGTTTTGC
* * *
6195284 GATTTACTCTAGGAAAAAA
964 GATTTACCCTACGAAAAAT
* * * *
6195303 GCTATAAAAAGCCAACTAAGGAAACACTAAATGACGAA-AAAAAAGTGGGAGATATCG-TTAGGA
1 GCTATAAAAAGCCAAATGAGGAAACACTAAACGACGAACAAAAAAGTGGGAGACAT-GTTTA-GA
* * * *
6195366 -GTGAATAAGGGTATGGCTACGTAAGGGAAAGAAAGTTGAATGCAGTCCTTCTTAGCAATAACAA
64 CGTGAATAAGGGTTTGGCTACGTAAGGGAAAGAAAGTTAAAGGCA-TCCTTCTTAGCCATAACAA
* * *
6195430 GATGCTGTGCTGCCGAAGTGTGGATTGGGCAAGCGAAAATTGTTTCCCAAAGTTCTTTTGATATT
128 GATGATGTGCTGCCGAAG-GT-GA-TGGGCAAGCGAAAGTTGTTTCCCAAAGTTCTTTTGTTATT
* * * *
6195495 TCCATTAATGTTCCTTCGAAAGATTGAATTTAAGTAGTTGAACATAATTTCAGATAATATTTTGG
190 TCCATTAGTGTTCCTTCGAAAGATTGAATTGAAGTAGTTGAACACAATGTCAGATAATATTTTGG
* *
6195560 TTTGGAATTTTATTTCCCAATCC-ATGAGCCAAATCTCAGAAGGTTGGGATTACTTTCAATG---
255 TTTGGAATTTTATTTCCC-AGCCTATGAGCCAAATCTCATAAGGTTGGGATTACTTTCAATGAAA
*
6195621 -------A----A-GGATGAAGTATATATCTAATTTACTTTACTGTTTCATTTGATTGTTCTTAT
319 CTTAACTATTTTATGGATGAAGTATATATCTAATTTACTTTACTATTTCATTTGATTGTTCTTAT
* *
6195674 TTCTTAATTAGAATGCAAATGATATTTACACATAGAAGACTGTTCACAT-ATTACAAACTGATTA
384 TTCTTAATTAGAATGCAAATGATATTTAGACATAGAAGACTGTTCACATAATTATAAACTGATTA
* * *
6195738 CTTAAACATGATCAAAAGAATAAGTTTATGTTTTGGAACTATTTTGAAGCTTAAAAATGAAAATA
449 CTTAAACATGATCAGAAGAATGAGTTTATGTTTTTGAACTATTTTGAAGCTTAAAAATGAAAATA
*
6195803 AATCATTCTGTCATAGTGAATGATTAGTCTTGAAAAGAGTTATAATTCTTGCCTTTTGGCTAGGT
514 AATCATTCTGTCATAGTGAATGATTAGTCTTGAAAAGAGTTATAATTCTTGCCTTTTGGCTGGGT
* *
6195868 CAATTGTCTGCACTTAAGTGAGCATAGTTGCAATTTAGGATACTAATTTAGCACTTTTAGAACAT
579 CAATTGTCTGCACTTAAGTGAACTTAGTTGCAATTTAGGATACTAATTTAGCACTTTTAGAACAT
6195933 TGTACAAGAAGATTGGATAGTGCTTAATTATTATTATTTGTTACTTTTAATTTCTTGTGGTAGGG
644 TGTACAAGAAGATTGGATAGTGCTTAATTATTATTATTTGTTACTTTTAATTTCTTGTGGTAGGG
* *
6195998 CTGTGTTTGGTTGTCTGGTTGGTGTAGGATTTGGAAAAAGAAACAAAGGAGTGAACGTTTACTGG
709 CTGTGTTTGGTGGTCTGGTTGGTGCAGGA-TTGGAAAAAGAAACAAAGGAGTGAACGTTTACTGG
*
6196063 GGCAAAGAGTTGGACATTTTGCCAAAATGGATGTTGTGGCAATGTCGGAAAGACTGATTTAACAC
773 GGCAAAGAGTTGGACATTTTGCCAAAATGGATG-TGTGGCAATGTCGGAAAGACTGAGTTAACAC
* *
6196128 TCAACGCATGCCAATTTCAGCCCAACTTTACTTTTACAAAAAAAGTTTGCCTAAAAAATAGGAGA
837 TCAACGCATGCCAATTTCAGCCCAACTTTACTTTTACCAAAAAAGTCTGCCTAAAAAATAGGAGA
* * * *
6196193 AGACAATATTGGGTTGTTTTAAAAAAGAATTTAAATTGAGGAGAAGAAAGACAAGGGTTTTGCGA
902 AGAAAATATTGGGTT-TGTTAAAAAAGAATTTAAATTGAGGAGAAGATAGACATGGGTTTTGCGA
6196258 TTTACCCTACGAAAAAT
966 TTTACCCTACGAAAAAT
6196275 GCTATAAAAAGCCAAATGAGGAAACACTAAACGACGAACCAAAAAAGTGGGAGACATGTTTAGAC
1 GCTATAAAAAGCCAAATGAGGAAACACTAAACGACGAA-CAAAAAAGTGGGAGACATGTTTAGAC
* * * *
6196340 GTGAATAAGTGTTTGGCTACGTAAGGCAAAGAAAGTAAAAGGCATCCCTTCTTAGCCATCACAAG
65 GTGAATAAGGGTTTGGCTACGTAAGGGAAAGAAAGTTAAAGGCAT-CCTTCTTAGCCATAACAAG
* * * *
6196405 ATGAAGTGCTGCCGAAGCGTGCACTAGGCAAGCGAAAGTTGTTTCCTAAAGTTCTTTTGTTGTTT
129 ATGATGTGCTGCCGAAG-GTG-A-TGGGCAAGCGAAAGTTGTTTCCCAAAGTTCTTTTGTTATTT
6196470 CCATTAGTGTTCCTTCGAAAGATTGAATTGAAGTAGTTGAACACAATGTCAGATAATATTTTGGT
191 CCATTAGTGTTCCTTCGAAAGATTGAATTGAAGTAGTTGAACACAATGTCAGATAATATTTTGGT
* *
6196535 TTGGAATTTTATTTCCCAGCCTATGAGTCAAATCTCATAAGGTTGGGATTACTTTTAATGAAACC
256 TTGGAATTTTATTTCCCAGCCTATGAGCCAAATCTCATAAGGTTGGGATTACTTTCAATGAAA-C
* * * *
6196600 TTCAACTATTTTTATGAATGCAGTGTATATCGAATTTACTTTACTATTTCATTTGATTGTTCTTA
320 TT-AACTA-TTTTATGGATGAAGTATATATCTAATTTACTTTACTATTTCATTTGATTGTTCTTA
6196665 TTTCTTAATTAGAATGCAAATGATATTTAGACATAGAAGACTGTTCACATAATTATAAACTGATT
383 TTTCTTAATTAGAATGCAAATGATATTTAGACATAGAAGACTGTTCACATAATTATAAACTGATT
6196730 ACTTAAACATGATCAGAAGAATGAGTTTATGTTTTTGAACTA-TTTGAAGCTTAAAAATGAAAAT
448 ACTTAAACATGATCAGAAGAATGAGTTTATGTTTTTGAACTATTTTGAAGCTTAAAAATGAAAAT
*
6196794 AAATCATTCTATCATAGTGAATGATTAGTCTTGAAAAGAGTTATAATTCTTGCCTTTTGGCTGGG
513 AAATCATTCTGTCATAGTGAATGATTAGTCTTGAAAAGAGTTATAATTCTTGCCTTTTGGCTGGG
* *
6196859 TCAATTGTCTGCACTTAAGTGAACTTAGTGGCAGTTTAGGATACTAATTTAGCACTTTTAGAACA
578 TCAATTGTCTGCACTTAAGTGAACTTAGTTGCAATTTAGGATACTAATTTAGCACTTTTAGAACA
*
6196924 TTGTACAAGAAGATTGGATAGTGCTTAATTATTATTATTTGTTACTTTTAATTTTTTGTGGTAGG
643 TTGTACAAGAAGATTGGATAGTGCTTAATTATTATTATTTGTTACTTTTAATTTCTTGTGGTAGG
* *
6196989 GCTGTGTTTGGTGGTCTGGTTGGTGCAGGATTAGAAAAAAAAATCAAAGGAGTGAACGTTTACTG
708 GCTGTGTTTGGTGGTCTGGTTGGTGCAGGATTGGAAAAAGAAA-CAAAGGAGTGAACGTTTACTG
*
6197054 GGGCAAAGAGTTGGACATTTTGCCAAAATGGATGTGGTGGCAATATCGGAAAGACTGAGTTAACA
772 GGGCAAAGAGTTGGACATTTTGCCAAAATGGATGT-GTGGCAATGTCGGAAAGACTGAGTTAACA
* *
6197119 CTCAACGCATGCCAATTCCAGCCCAACTTTACTTTTACCAAAAAAGTCTGCCTAAAAAGTAGGAG
836 CTCAACGCATGCCAATTTCAGCCCAACTTTACTTTTACCAAAAAAGTCTGCCTAAAAAATAGGAG
*
6197184 AAGATAATATTGGGTTCTGTTAAAAAAGAATTTAAATTGAGGAGAAGATAGACATGGGTTTTGCG
901 AAGAAAATATTGGGTT-TGTTAAAAAAGAATTTAAATTGAGGAGAAGATAGACATGGGTTTTGCG
*
6197249 ATTTACCCTATGAAAAAT
965 ATTTACCCTACGAAAAAT
*
6197267 GCTATAAAAAGCCAAATGAGGAAACACTAAACGAC-AACAAAAAAGTGGGAGAGATGTTTAGACG
1 GCTATAAAAAGCCAAATGAGGAAACACTAAACGACGAACAAAAAAGTGGGAGACATGTTTAGACG
* *
6197331 TGAATAAGTGTTTGGCTACGTAAGGGAAAGAAAGTCAAAGGCATTCCTTCTTAG
66 TGAATAAGGGTTTGGCTACGTAAGGGAAAGAAAGTTAAAGGCA-TCCTTCTTAG
6197385 NNNNNNNNNN
Statistics
Matches: 1855, Mismatches: 173, Indels: 95
0.87 0.08 0.04
Matches are distributed among these distances:
968 71 0.04
969 392 0.21
970 56 0.03
971 36 0.02
972 54 0.03
973 8 0.00
974 241 0.13
975 1 0.00
976 16 0.01
977 35 0.02
979 2 0.00
980 1 0.00
981 18 0.01
982 47 0.03
983 2 0.00
984 1 0.00
985 1 0.00
986 1 0.00
987 138 0.07
988 3 0.00
990 76 0.04
991 16 0.01
992 587 0.32
993 52 0.03
ACGTcount: A:0.34, C:0.13, G:0.21, T:0.32
Consensus pattern (982 bp):
GCTATAAAAAGCCAAATGAGGAAACACTAAACGACGAACAAAAAAGTGGGAGACATGTTTAGACG
TGAATAAGGGTTTGGCTACGTAAGGGAAAGAAAGTTAAAGGCATCCTTCTTAGCCATAACAAGAT
GATGTGCTGCCGAAGGTGATGGGCAAGCGAAAGTTGTTTCCCAAAGTTCTTTTGTTATTTCCATT
AGTGTTCCTTCGAAAGATTGAATTGAAGTAGTTGAACACAATGTCAGATAATATTTTGGTTTGGA
ATTTTATTTCCCAGCCTATGAGCCAAATCTCATAAGGTTGGGATTACTTTCAATGAAACTTAACT
ATTTTATGGATGAAGTATATATCTAATTTACTTTACTATTTCATTTGATTGTTCTTATTTCTTAA
TTAGAATGCAAATGATATTTAGACATAGAAGACTGTTCACATAATTATAAACTGATTACTTAAAC
ATGATCAGAAGAATGAGTTTATGTTTTTGAACTATTTTGAAGCTTAAAAATGAAAATAAATCATT
CTGTCATAGTGAATGATTAGTCTTGAAAAGAGTTATAATTCTTGCCTTTTGGCTGGGTCAATTGT
CTGCACTTAAGTGAACTTAGTTGCAATTTAGGATACTAATTTAGCACTTTTAGAACATTGTACAA
GAAGATTGGATAGTGCTTAATTATTATTATTTGTTACTTTTAATTTCTTGTGGTAGGGCTGTGTT
TGGTGGTCTGGTTGGTGCAGGATTGGAAAAAGAAACAAAGGAGTGAACGTTTACTGGGGCAAAGA
GTTGGACATTTTGCCAAAATGGATGTGTGGCAATGTCGGAAAGACTGAGTTAACACTCAACGCAT
GCCAATTTCAGCCCAACTTTACTTTTACCAAAAAAGTCTGCCTAAAAAATAGGAGAAGAAAATAT
TGGGTTTGTTAAAAAAGAATTTAAATTGAGGAGAAGATAGACATGGGTTTTGCGATTTACCCTAC
GAAAAAT
Found at i:6208538 original size:28 final size:28
Alignment explanation
Indices: 6208498--6208590 Score: 159
Period size: 28 Copynumber: 3.3 Consensus size: 28
6208488 ATGTACTAGA
6208498 ATACCCCTATGTATGCAAAATTACCATT
1 ATACCCCTATGTATGCAAAATTACCATT
*
6208526 ATACCCCTATGTACGCAAAATTACCATT
1 ATACCCCTATGTATGCAAAATTACCATT
* *
6208554 ATACCCCTATGTATGCAAAATGACCTTT
1 ATACCCCTATGTATGCAAAATTACCATT
6208582 ATACCCCTA
1 ATACCCCTA
6208591 GGGTTAATTT
Statistics
Matches: 61, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
28 61 1.00
ACGTcount: A:0.34, C:0.28, G:0.08, T:0.30
Consensus pattern (28 bp):
ATACCCCTATGTATGCAAAATTACCATT
Found at i:6208754 original size:27 final size:27
Alignment explanation
Indices: 6208696--6208785 Score: 117
Period size: 28 Copynumber: 3.2 Consensus size: 27
6208686 AGGAAGCGTC
* *
6208696 CTGGTGGCTTTGCCACAAATTATCTATT
1 CTGGTGGCTCTGCCACAAA-TATCTGTT
*
6208724 CTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTCTGCCACAAATATCTGTT
*
6208751 CTGGTGGCACTGCCACAAAATATCTGTAT
1 CTGGTGGCTCTGCCAC-AAATATCTGT-T
6208780 CTGGTG
1 CTGGTG
6208786 ACCCTGTCAC
Statistics
Matches: 55, Mismatches: 5, Indels: 3
0.87 0.08 0.05
Matches are distributed among these distances:
27 22 0.40
28 26 0.47
29 7 0.13
ACGTcount: A:0.20, C:0.23, G:0.22, T:0.34
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACAAATATCTGTT
Found at i:6208796 original size:29 final size:28
Alignment explanation
Indices: 6208706--6208796 Score: 94
Period size: 27 Copynumber: 3.2 Consensus size: 28
6208696 CTGGTGGCTT
* * * *
6208706 TGCCACAAATTATCTATTCTGGTGGCTC
1 TGCCACAAAATATCTGTTCTGGTGACAC
* *
6208734 TGCCAC-ATATATCTGTTCTGGTGGCAC
1 TGCCACAAAATATCTGTTCTGGTGACAC
*
6208761 TGCCACAAAATATCTGTATCTGGTGACCC
1 TGCCACAAAATATCTGT-TCTGGTGACAC
*
6208790 TGTCACA
1 TGCCACA
6208797 TTTTCTGTAT
Statistics
Matches: 53, Mismatches: 8, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
27 23 0.43
28 15 0.28
29 15 0.28
ACGTcount: A:0.23, C:0.26, G:0.19, T:0.32
Consensus pattern (28 bp):
TGCCACAAAATATCTGTTCTGGTGACAC
Found at i:6208804 original size:55 final size:56
Alignment explanation
Indices: 6208696--6208810 Score: 135
Period size: 55 Copynumber: 2.1 Consensus size: 56
6208686 AGGAAGCGTC
** * * *
6208696 CTGGTGGCTTTGCCACAAATTATCTATTCTGGTGGCTCTGCCACATATATCTGT-T
1 CTGGTGGCACTGCCACAAAATATCTATTCTGGTGACCCTGCCACATATATCTGTAT
* * *
6208751 CTGGTGGCACTGCCACAAAATATCTGTATCTGGTGACCCTGTCACAT-TTTCTGTAT
1 CTGGTGGCACTGCCACAAAATATCTAT-TCTGGTGACCCTGCCACATATATCTGTAT
6208807 CTGG
1 CTGG
6208811 CAGCCATGCT
Statistics
Matches: 50, Mismatches: 8, Indels: 3
0.82 0.13 0.05
Matches are distributed among these distances:
55 29 0.58
56 21 0.42
ACGTcount: A:0.19, C:0.24, G:0.21, T:0.36
Consensus pattern (56 bp):
CTGGTGGCACTGCCACAAAATATCTATTCTGGTGACCCTGCCACATATATCTGTAT
Found at i:6215616 original size:28 final size:28
Alignment explanation
Indices: 6215576--6215920 Score: 654
Period size: 28 Copynumber: 12.3 Consensus size: 28
6215566 ATGTACTAGA
*
6215576 ATACTCCTATGTATGCAAAATTACCATT
1 ATACCCCTATGTATGCAAAATTACCATT
6215604 ATACCCCTATGTATGCAAAATTACCATT
1 ATACCCCTATGTATGCAAAATTACCATT
6215632 ATACCCCTATGTATGCAAAATTACCATT
1 ATACCCCTATGTATGCAAAATTACCATT
6215660 ATACCCCTATGTATGCAAAATTACCATT
1 ATACCCCTATGTATGCAAAATTACCATT
6215688 ATACCCCTATGTATGCAAAATTACCATT
1 ATACCCCTATGTATGCAAAATTACCATT
6215716 ATACCCCTATGTATGCAAAATTACCATT
1 ATACCCCTATGTATGCAAAATTACCATT
6215744 ATACCCCTATGTATGCAAAATTACCATT
1 ATACCCCTATGTATGCAAAATTACCATT
6215772 ATACCCCTATGTATGCAAAATTACCATT
1 ATACCCCTATGTATGCAAAATTACCATT
6215800 ATACCCCTATGTATGCAAAATTACCATT
1 ATACCCCTATGTATGCAAAATTACCATT
6215828 ATACCCCTATGTATGCAAAATTACCATT
1 ATACCCCTATGTATGCAAAATTACCATT
6215856 ATACCCCTATGTATGCAAAATTACCATT
1 ATACCCCTATGTATGCAAAATTACCATT
* * *
6215884 ATACCCCCATGTATGCAAAATGACCTTT
1 ATACCCCTATGTATGCAAAATTACCATT
6215912 ATACCCCTA
1 ATACCCCTA
6215921 GGGTTAATTT
Statistics
Matches: 312, Mismatches: 5, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
28 312 1.00
ACGTcount: A:0.35, C:0.26, G:0.07, T:0.32
Consensus pattern (28 bp):
ATACCCCTATGTATGCAAAATTACCATT
Found at i:6216084 original size:27 final size:27
Alignment explanation
Indices: 6216026--6216115 Score: 110
Period size: 28 Copynumber: 3.2 Consensus size: 27
6216016 AGGAAGCGTC
6216026 CTGGTGGCTA-TGCCACAAATTATCTGTT
1 CTGGTGGC-ACTGCCACAAA-TATCTGTT
* * *
6216054 CTGGTGGCCCTGCCACATATATCTATT
1 CTGGTGGCACTGCCACAAATATCTGTT
6216081 CTGGTGGCACTGCCACAAAATATCTGTAT
1 CTGGTGGCACTGCCAC-AAATATCTGT-T
6216110 CTGGTG
1 CTGGTG
6216116 ACTCTGTCAC
Statistics
Matches: 53, Mismatches: 6, Indels: 5
0.83 0.09 0.08
Matches are distributed among these distances:
27 22 0.42
28 24 0.45
29 7 0.13
ACGTcount: A:0.21, C:0.24, G:0.22, T:0.32
Consensus pattern (27 bp):
CTGGTGGCACTGCCACAAATATCTGTT
Found at i:6216507 original size:45 final size:45
Alignment explanation
Indices: 6216440--6216529 Score: 153
Period size: 45 Copynumber: 2.0 Consensus size: 45
6216430 GTAATCTTCA
*
6216440 ACCATAGTGGGCTTGGAGCTGTGAGGGATTCGGACTGGCCACATG
1 ACCATAGTGGGCTTAGAGCTGTGAGGGATTCGGACTGGCCACATG
* *
6216485 ACCATAGTGGGCTTAGATCTGTGAGTGATTCGGACTGGCCACATG
1 ACCATAGTGGGCTTAGAGCTGTGAGGGATTCGGACTGGCCACATG
6216530 TTTCTACGAA
Statistics
Matches: 42, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
45 42 1.00
ACGTcount: A:0.21, C:0.20, G:0.34, T:0.24
Consensus pattern (45 bp):
ACCATAGTGGGCTTAGAGCTGTGAGGGATTCGGACTGGCCACATG
Found at i:6218944 original size:46 final size:46
Alignment explanation
Indices: 6218865--6218970 Score: 176
Period size: 46 Copynumber: 2.3 Consensus size: 46
6218855 ATACAAGTGA
* *
6218865 GAGTTCACTTATGGATGCGAGCATCCGAACTCGTTGAGTTGAGTCC
1 GAGTTCACTTATGGATGCGAACACCCGAACTCGTTGAGTTGAGTCC
* *
6218911 GAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGTTGAGTCC
1 GAGTTCACTTATGGATGCGAACACCCGAACTCGTTGAGTTGAGTCC
6218957 GAGTTCACTTATGG
1 GAGTTCACTTATGG
6218971 GCGGGTTACA
Statistics
Matches: 56, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
46 56 1.00
ACGTcount: A:0.21, C:0.22, G:0.29, T:0.28
Consensus pattern (46 bp):
GAGTTCACTTATGGATGCGAACACCCGAACTCGTTGAGTTGAGTCC
Found at i:6220347 original size:10 final size:10
Alignment explanation
Indices: 6220332--6220370 Score: 69
Period size: 10 Copynumber: 3.8 Consensus size: 10
6220322 TGCTTTTGTA
6220332 CATGATATGC
1 CATGATATGC
6220342 CATGATATGC
1 CATGATATGC
6220352 ACATGATATGC
1 -CATGATATGC
6220363 CATGATAT
1 CATGATAT
6220371 ATTCACATAT
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
10 18 0.64
11 10 0.36
ACGTcount: A:0.33, C:0.18, G:0.18, T:0.31
Consensus pattern (10 bp):
CATGATATGC
Found at i:6220355 original size:21 final size:21
Alignment explanation
Indices: 6220331--6220370 Score: 80
Period size: 21 Copynumber: 1.9 Consensus size: 21
6220321 CTGCTTTTGT
6220331 ACATGATATGCCATGATATGC
1 ACATGATATGCCATGATATGC
6220352 ACATGATATGCCATGATAT
1 ACATGATATGCCATGATAT
6220371 ATTCACATAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.35, C:0.17, G:0.17, T:0.30
Consensus pattern (21 bp):
ACATGATATGCCATGATATGC
Found at i:6224439 original size:24 final size:24
Alignment explanation
Indices: 6224412--6224461 Score: 64
Period size: 24 Copynumber: 2.1 Consensus size: 24
6224402 TACAAATATT
6224412 ATCATCCCATATTACCATATATCA
1 ATCATCCCATATTACCATATATCA
* * **
6224436 ATCATCTCATGTTTTCATATATCA
1 ATCATCCCATATTACCATATATCA
6224460 AT
1 AT
6224462 TGTCATGTAT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.34, C:0.24, G:0.02, T:0.40
Consensus pattern (24 bp):
ATCATCCCATATTACCATATATCA
Found at i:6232167 original size:51 final size:51
Alignment explanation
Indices: 6232080--6232179 Score: 148
Period size: 51 Copynumber: 2.0 Consensus size: 51
6232070 AGATATATGG
*
6232080 CATCCGAGCTCGTTGAGAGGTCTGAGTTCATAATGGATGTGATT-CATGTAA
1 CATCCGAGCTCGTTGAGAGGTCCGAGTTCATAATGGATGTG-TTACATGTAA
* * *
6232131 CATCTGAGTTCGTTGAGAGGTCCGAGTTCATTATGGATGTGTTACATGT
1 CATCCGAGCTCGTTGAGAGGTCCGAGTTCATAATGGATGTGTTACATGT
6232180 TATGTGGTAG
Statistics
Matches: 44, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
50 2 0.05
51 42 0.95
ACGTcount: A:0.23, C:0.15, G:0.28, T:0.34
Consensus pattern (51 bp):
CATCCGAGCTCGTTGAGAGGTCCGAGTTCATAATGGATGTGTTACATGTAA
Found at i:6239087 original size:310 final size:310
Alignment explanation
Indices: 6238525--6239147 Score: 1237
Period size: 310 Copynumber: 2.0 Consensus size: 310
6238515 TTCGGGGACG
6238525 AAAATCCCTAAAGGGGAGAGGGTTGTAACATCACGAATTAGGGTCTAATTGGAATAGTGGTTTTG
1 AAAATCCCTAAAGGGGAGAGGGTTGTAACATCACGAATTAGGGTCTAATTGGAATAGTGGTTTTG
6238590 AGACCACAAATCTGAAGATAGAAATAATTATTTTATGATTCTTATAAGGTTTATGTTATGAATGT
66 AGACCACAAATCTGAAGATAGAAATAATTATTTTATGATTCTTATAAGGTTTATGTTATGAATGT
6238655 ATGTTTATGTGAAAGTTTCATGAAGAAATTCTATGCATAAAATGTCTAATTGCATTTTAGGGACC
131 ATGTTTATGTGAAAGTTTCATGAAGAAATTCTATGCATAAAATGTCTAATTGCATTTTAGGGACC
6238720 AAATTAAATAAACTGTAAAACTTGTATTCTAGAAGCTTTAAGCATGAAATTGCATTAGATATTAA
196 AAATTAAATAAACTGTAAAACTTGTATTCTAGAAGCTTTAAGCATGAAATTGCATTAGATATTAA
6238785 ATTAGAGGGTCCTAATTAGCAATTTGACCAATTTTTATAATTGTGGACAA
261 ATTAGAGGGTCCTAATTAGCAATTTGACCAATTTTTATAATTGTGGACAA
6238835 AAAATCCCTAAAGGGGAGAGGGTTGTAACATCACGAATTAGGGTCTAATTGGAATAGTGGTTTTG
1 AAAATCCCTAAAGGGGAGAGGGTTGTAACATCACGAATTAGGGTCTAATTGGAATAGTGGTTTTG
6238900 AGACCACAAATCTGAAGATAGAAATAATTATTTTATGATTCTTATAAGGTTTATGTTATGAATGT
66 AGACCACAAATCTGAAGATAGAAATAATTATTTTATGATTCTTATAAGGTTTATGTTATGAATGT
*
6238965 ATGTTTATGTGAAAGTTTCATGAAGAAATTCTATGCATAAAATGTCTAATTGCATTTTAGTGACC
131 ATGTTTATGTGAAAGTTTCATGAAGAAATTCTATGCATAAAATGTCTAATTGCATTTTAGGGACC
6239030 AAATTAAATAAACTGTAAAACTTGTATTCTAGAAGCTTTAAGCATGAAATTGCATTAGATATTAA
196 AAATTAAATAAACTGTAAAACTTGTATTCTAGAAGCTTTAAGCATGAAATTGCATTAGATATTAA
6239095 ATTAGAGGGTCCTAATTAGCAATTTGACCAATTTTTATAATTGTGGACAA
261 ATTAGAGGGTCCTAATTAGCAATTTGACCAATTTTTATAATTGTGGACAA
6239145 AAA
1 AAA
6239148 TGGACATGCA
Statistics
Matches: 312, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
310 312 1.00
ACGTcount: A:0.37, C:0.10, G:0.18, T:0.35
Consensus pattern (310 bp):
AAAATCCCTAAAGGGGAGAGGGTTGTAACATCACGAATTAGGGTCTAATTGGAATAGTGGTTTTG
AGACCACAAATCTGAAGATAGAAATAATTATTTTATGATTCTTATAAGGTTTATGTTATGAATGT
ATGTTTATGTGAAAGTTTCATGAAGAAATTCTATGCATAAAATGTCTAATTGCATTTTAGGGACC
AAATTAAATAAACTGTAAAACTTGTATTCTAGAAGCTTTAAGCATGAAATTGCATTAGATATTAA
ATTAGAGGGTCCTAATTAGCAATTTGACCAATTTTTATAATTGTGGACAA
Found at i:6244192 original size:51 final size:49
Alignment explanation
Indices: 6244064--6244192 Score: 177
Period size: 49 Copynumber: 2.6 Consensus size: 49
6244054 TATTGTGAGG
* * * *
6244064 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGG
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGCGTACCCGAAAATTGA
* * *
6244113 TCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGAAAACTGTGA
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGCGTACCCGAAAA-T-TGA
6244164 TCACGTGTGTAGTACTAAGTGCAGGCTAC
1 TCACGTGTGTAGTACTAAGTGCAGGCTAC
6244193 AAATGAAAAT
Statistics
Matches: 69, Mismatches: 9, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
49 39 0.57
50 1 0.01
51 29 0.42
ACGTcount: A:0.26, C:0.20, G:0.27, T:0.27
Consensus pattern (49 bp):
TCACGTGTGTAGTACTAAGTGCAGGCTACTACGCGTACCCGAAAATTGA
Found at i:6246794 original size:40 final size:39
Alignment explanation
Indices: 6246696--6246878 Score: 188
Period size: 40 Copynumber: 4.6 Consensus size: 39
6246686 TCCTCGTTCA
* * *
6246696 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC
1 AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCACAC
* *
6246735 AATGCCTTCGGGACATAACCCGGATTTAATAACTCACAC
1 AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCACAC
* *
6246774 GAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCAC
1 -AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCACAC
* * * * * *
6246814 AAAGGCCTTC-GGATCTTAATCCGGATATATTCACTTAGCAC
1 -AATGCCTTCGGGA-CTTAACCCGGATTTAGTAACTCA-CAC
* *
6246855 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
6246879 CAGCATTCAA
Statistics
Matches: 121, Mismatches: 19, Indels: 7
0.82 0.13 0.05
Matches are distributed among these distances:
39 39 0.32
40 76 0.63
41 6 0.05
ACGTcount: A:0.27, C:0.27, G:0.20, T:0.25
Consensus pattern (39 bp):
AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCACAC
Found at i:6254748 original size:40 final size:40
Alignment explanation
Indices: 6254566--6254788 Score: 236
Period size: 40 Copynumber: 5.6 Consensus size: 40
6254556 TCCTCGTTCA
* * * * *
6254566 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* *
6254605 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
6254645 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * *
6254685 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* ** * * * *
6254725 AAGGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCAC-
1 AATGCCTTCGGGA-CTTAACCCGGATTTAATAAC-TCGCACG
* *
6254765 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
6254789 CAGCATTCAA
Statistics
Matches: 160, Mismatches: 20, Indels: 7
0.86 0.11 0.04
Matches are distributed among these distances:
39 37 0.23
40 115 0.72
41 8 0.05
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:6254797 original size:41 final size:41
Alignment explanation
Indices: 6254720--6254797 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
6254710 TTAGTATCTC
* * *
6254720 GCACAAAGGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAAGGCCTTCGGATCTTAGCCCGGACACATTCACTTA
6254761 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAAGGCCTTC-GGATCTTAGCCCGGACA-CATTCA
6254798 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.23
Consensus pattern (41 bp):
GCACAAAGGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:6258109 original size:15 final size:15
Alignment explanation
Indices: 6258089--6258144 Score: 62
Period size: 15 Copynumber: 3.7 Consensus size: 15
6258079 GTATCTTGGG
6258089 TTTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
*
6258104 TTTCTTTATTCTGGG
1 TTTCTTTATTCTGGA
*
6258119 TTT-TTCTA-TCTTTGA
1 TTTCTT-TATTC-TGGA
6258134 TTTCTTTATTC
1 TTTCTTTATTC
6258145 AGTTTTCTTG
Statistics
Matches: 34, Mismatches: 3, Indels: 7
0.77 0.07 0.16
Matches are distributed among these distances:
14 4 0.12
15 26 0.76
16 4 0.12
ACGTcount: A:0.11, C:0.14, G:0.11, T:0.64
Consensus pattern (15 bp):
TTTCTTTATTCTGGA
Found at i:6260588 original size:48 final size:51
Alignment explanation
Indices: 6260493--6260629 Score: 181
Period size: 48 Copynumber: 2.7 Consensus size: 51
6260483 TATTGTGAGG
* * * *
6260493 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAACTG-G-
1 TCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCCGAAAACTGTGA
* *
6260542 TCGCATGTGTAGTACTAAGTGTA-GCTACTATGTGTACCCGAAAACTGTGA
1 TCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCCGAAAACTGTGA
* *
6260592 TCACGTGTGTAGTACTAAGTGCAGGCTACTATGCGTAC
1 TCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTAC
6260630 TAGATAGCTT
Statistics
Matches: 75, Mismatches: 10, Indels: 4
0.84 0.11 0.04
Matches are distributed among these distances:
48 21 0.28
49 21 0.28
50 20 0.27
51 13 0.17
ACGTcount: A:0.26, C:0.20, G:0.26, T:0.28
Consensus pattern (51 bp):
TCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCCGAAAACTGTGA
Found at i:6263654 original size:30 final size:30
Alignment explanation
Indices: 6263615--6263671 Score: 96
Period size: 30 Copynumber: 1.9 Consensus size: 30
6263605 ACACATTATC
6263615 GTGTCGCCAGGCCATGTGTCTCACATGACA
1 GTGTCGCCAGGCCATGTGTCTCACATGACA
* *
6263645 GTGTTGCCAGGCCGTGTGTCTCACATG
1 GTGTCGCCAGGCCATGTGTCTCACATG
6263672 GCGGAGTCAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.16, C:0.28, G:0.30, T:0.26
Consensus pattern (30 bp):
GTGTCGCCAGGCCATGTGTCTCACATGACA
Found at i:6267416 original size:35 final size:35
Alignment explanation
Indices: 6267375--6267441 Score: 116
Period size: 35 Copynumber: 1.9 Consensus size: 35
6267365 GATGTGTTTA
* *
6267375 TTTGTGGATGAGATGTACGATGAATGGCACATTTG
1 TTTGTGGATGAGATGTACGATAAAGGGCACATTTG
6267410 TTTGTGGATGAGATGTACGATAAAGGGCACAT
1 TTTGTGGATGAGATGTACGATAAAGGGCACAT
6267442 GTGCTAAGTG
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
35 30 1.00
ACGTcount: A:0.28, C:0.09, G:0.31, T:0.31
Consensus pattern (35 bp):
TTTGTGGATGAGATGTACGATAAAGGGCACATTTG
Found at i:6271360 original size:42 final size:43
Alignment explanation
Indices: 6271306--6271408 Score: 120
Period size: 42 Copynumber: 2.4 Consensus size: 43
6271296 GATTTATGTA
** *
6271306 TAAGACCATGTCTGGGACATCGGCATCG-TATCTG-ATTTCATG
1 TAAGACCATGTCTGGGACAGAGGCATCGATAT-TGAATTACATG
* *
6271348 TAAGACCCTGTCTGGGATAGAGGCATCGATATTGAATTACATG
1 TAAGACCATGTCTGGGACAGAGGCATCGATATTGAATTACATG
* *
6271391 TAAGACCACGTTTGGGAC
1 TAAGACCATGTCTGGGAC
6271409 GTCAGCATTG
Statistics
Matches: 50, Mismatches: 9, Indels: 3
0.81 0.15 0.05
Matches are distributed among these distances:
42 26 0.52
43 24 0.48
ACGTcount: A:0.27, C:0.19, G:0.25, T:0.28
Consensus pattern (43 bp):
TAAGACCATGTCTGGGACAGAGGCATCGATATTGAATTACATG
Found at i:6285119 original size:24 final size:24
Alignment explanation
Indices: 6285087--6285163 Score: 127
Period size: 24 Copynumber: 3.2 Consensus size: 24
6285077 AAGTCTATCA
* *
6285087 GGAGAGGATTTAGGTGTTGATAAG
1 GGAGAGGATTTAGGAGCTGATAAG
6285111 GGAGAGGATTTAGGAGCTGATAAG
1 GGAGAGGATTTAGGAGCTGATAAG
*
6285135 GGAGAGGATTTAGGAGCTGATTAG
1 GGAGAGGATTTAGGAGCTGATAAG
6285159 GGAGA
1 GGAGA
6285164 ACAGTGTTGG
Statistics
Matches: 50, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
24 50 1.00
ACGTcount: A:0.31, C:0.03, G:0.43, T:0.23
Consensus pattern (24 bp):
GGAGAGGATTTAGGAGCTGATAAG
Found at i:6286612 original size:27 final size:26
Alignment explanation
Indices: 6286572--6286678 Score: 142
Period size: 27 Copynumber: 4.0 Consensus size: 26
6286562 AGGAAGCGTC
* *
6286572 CTGGTGGCTATGCCACTATAATCTGAT
1 CTGGTGGCTCTGCCAC-ATAATCTGTT
6286599 CTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTCTGCCACATA-ATCTGTT
*
6286626 CTGGTGGCTCTGCCACGATTATCTGTT
1 CTGGTGGCTCTGCCAC-ATAATCTGTT
* *
6286653 CTGGTGGCTCTGTCACATTATCTGTT
1 CTGGTGGCTCTGCCACATAATCTGTT
6286679 TTGGCAGCCA
Statistics
Matches: 74, Mismatches: 4, Indels: 5
0.89 0.05 0.06
Matches are distributed among these distances:
26 13 0.18
27 59 0.80
28 2 0.03
ACGTcount: A:0.15, C:0.24, G:0.23, T:0.37
Consensus pattern (26 bp):
CTGGTGGCTCTGCCACATAATCTGTT
Found at i:6286656 original size:54 final size:53
Alignment explanation
Indices: 6286572--6286678 Score: 160
Period size: 54 Copynumber: 2.0 Consensus size: 53
6286562 AGGAAGCGTC
*
6286572 CTGGTGGCTATGCCACTATAATCTGATCTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTATGCCACGATAATCTGATCTGGTGGCTCTGCCACAT-TATCTGTT
* * * *
6286626 CTGGTGGCTCTGCCACGATTATCTGTTCTGGTGGCTCTGTCACATTATCTGTT
1 CTGGTGGCTATGCCACGATAATCTGATCTGGTGGCTCTGCCACATTATCTGTT
6286679 TTGGCAGCCA
Statistics
Matches: 48, Mismatches: 5, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
53 8 0.17
54 40 0.83
ACGTcount: A:0.15, C:0.24, G:0.23, T:0.37
Consensus pattern (53 bp):
CTGGTGGCTATGCCACGATAATCTGATCTGGTGGCTCTGCCACATTATCTGTT
Found at i:6288783 original size:13 final size:13
Alignment explanation
Indices: 6288765--6288789 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
6288755 CAATTATTAT
6288765 TTTTATATATATA
1 TTTTATATATATA
6288778 TTTTATATATAT
1 TTTTATATATAT
6288790 TGTTGTATTT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (13 bp):
TTTTATATATATA
Found at i:6289107 original size:21 final size:21
Alignment explanation
Indices: 6289058--6289107 Score: 55
Period size: 22 Copynumber: 2.3 Consensus size: 21
6289048 TTTCGTGTTA
* * **
6289058 TTCATTTTAACCTTTTTTTAT
1 TTCATTTTAAACTTGTTGCAT
6289079 TATCATTTTAAACTTGTTGCAT
1 T-TCATTTTAAACTTGTTGCAT
6289101 TTCATTT
1 TTCATTT
6289108 GTGTTAATTT
Statistics
Matches: 24, Mismatches: 4, Indels: 2
0.80 0.13 0.07
Matches are distributed among these distances:
21 7 0.29
22 17 0.71
ACGTcount: A:0.22, C:0.14, G:0.04, T:0.60
Consensus pattern (21 bp):
TTCATTTTAAACTTGTTGCAT
Found at i:6301470 original size:44 final size:44
Alignment explanation
Indices: 6301410--6301569 Score: 164
Period size: 44 Copynumber: 3.6 Consensus size: 44
6301400 AGCGGCGAAT
*
6301410 CTTATC-CTCCTGAGGTAGCAGGGGAGCAGATTTTAGCCACTAGC
1 CTTATCTC-CCTGAGGTAGCAAGGGAGCAGATTTTAGCCACTAGC
* * * * * ** *
6301454 CTTATATCCCTAAGGTAGCAAGGAAGCAG-GTTAATGATTA-TAGT
1 CTTATCTCCCTGAGGTAGCAAGGGAGCAGATTTTA-G-CCACTAGC
* *
6301498 TTTATCTTCCTGAGGTAGCAAGGGAGCAGATTTTAGCCACTAGC
1 CTTATCTCCCTGAGGTAGCAAGGGAGCAGATTTTAGCCACTAGC
*
6301542 CTTATCTCCCTGAGGTAGCAAAGGAGCA
1 CTTATCTCCCTGAGGTAGCAAGGGAGCA
6301570 AGCTAATGAT
Statistics
Matches: 89, Mismatches: 22, Indels: 10
0.74 0.18 0.08
Matches are distributed among these distances:
43 4 0.04
44 80 0.90
45 5 0.06
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.27
Consensus pattern (44 bp):
CTTATCTCCCTGAGGTAGCAAGGGAGCAGATTTTAGCCACTAGC
Found at i:6301523 original size:88 final size:88
Alignment explanation
Indices: 6301409--6301613 Score: 286
Period size: 88 Copynumber: 2.3 Consensus size: 88
6301399 AAGCGGCGAA
* *
6301409 TCTTATCCTCCTGAGGTAGCAGGGGAGCAGATTTTAGCCACTAGCCTTATATCCCTAAGGTAGC-
1 TCTTATCTTCCTGAGGTAGCAAGGGAGCAGATTTTAGCCACTAGCCTTATATCCCTAAGGTAGCA
* * *
6301473 AAGGAAGCAGGTTAATGATTATAG
66 AAGG-AGCAAGCTAATGATTACAG
* * *
6301497 TTTTATCTTCCTGAGGTAGCAAGGGAGCAGATTTTAGCCACTAGCCTTATCTCCCTGAGGTAGCA
1 TCTTATCTTCCTGAGGTAGCAAGGGAGCAGATTTTAGCCACTAGCCTTATATCCCTAAGGTAGCA
*
6301562 AAGGAGCAAGCTAATGATTGCAG
66 AAGGAGCAAGCTAATGATTACAG
* * *
6301585 TCTTCTCTTCTTGAGGTAGTAAGGGAGCA
1 TCTTATCTTCCTGAGGTAGCAAGGGAGCA
6301614 AACTAATGTT
Statistics
Matches: 103, Mismatches: 13, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
88 99 0.96
89 4 0.04
ACGTcount: A:0.27, C:0.20, G:0.25, T:0.28
Consensus pattern (88 bp):
TCTTATCTTCCTGAGGTAGCAAGGGAGCAGATTTTAGCCACTAGCCTTATATCCCTAAGGTAGCA
AAGGAGCAAGCTAATGATTACAG
Found at i:6303840 original size:23 final size:23
Alignment explanation
Indices: 6303812--6303857 Score: 65
Period size: 24 Copynumber: 2.0 Consensus size: 23
6303802 CAAATTTCTT
6303812 CTTTTTCGTATTATTCATTTTAAC
1 CTTTTTCGTATTA-TCATTTTAAC
**
6303836 CTTTTTTTTATTATCATTTTAA
1 CTTTTTCGTATTATCATTTTAA
6303858 ACTTGTTACA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
23 9 0.45
24 11 0.55
ACGTcount: A:0.22, C:0.13, G:0.02, T:0.63
Consensus pattern (23 bp):
CTTTTTCGTATTATCATTTTAAC
Found at i:6304654 original size:16 final size:15
Alignment explanation
Indices: 6304629--6304663 Score: 61
Period size: 16 Copynumber: 2.3 Consensus size: 15
6304619 TTTGTTAAAA
6304629 TGATTAATCTCAAGG
1 TGATTAATCTCAAGG
6304644 TGATCTAATCTCAAGG
1 TGAT-TAATCTCAAGG
6304660 TGAT
1 TGAT
6304664 ATGATCACAC
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
15 4 0.21
16 15 0.79
ACGTcount: A:0.31, C:0.14, G:0.20, T:0.34
Consensus pattern (15 bp):
TGATTAATCTCAAGG
Found at i:6327732 original size:6 final size:6
Alignment explanation
Indices: 6327702--6327881 Score: 104
Period size: 6 Copynumber: 29.3 Consensus size: 6
6327692 AAGAAACATT
* * * *
6327702 ATCAGA A-CTAGA ATCAAA ATGAGA ATCAGA ATCAG- GTGACAGA ATCAAA
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA AT--CAGA ATCAGA
* * * *
6327751 ATCAGA ATCAGA ATCAAA ATTAG- GTGACAGA ATCAGA ATCAGT A-CAGGTA
1 ATCAGA ATCAGA ATCAGA ATCAGA AT--CAGA ATCAGA ATCAGA ATCA-G-A
* * *
6327801 A-CAAA ATCAGA ATCAGA ATCAGA ATCAGA ATTAG- GTGACAGA ATCAGA
1 ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA AT--CAGA ATCAGA
*
6327849 ATCAGT ATCAGGTA A-CAGA ATCAGA ATCAGA AT
1 ATCAGA ATCA-G-A ATCAGA ATCAGA ATCAGA AT
6327882 GTGAATGCAA
Statistics
Matches: 133, Mismatches: 24, Indels: 34
0.70 0.13 0.18
Matches are distributed among these distances:
5 10 0.08
6 105 0.79
7 14 0.11
8 4 0.03
ACGTcount: A:0.48, C:0.14, G:0.19, T:0.18
Consensus pattern (6 bp):
ATCAGA
Found at i:6327792 original size:37 final size:37
Alignment explanation
Indices: 6327711--6327831 Score: 124
Period size: 37 Copynumber: 3.3 Consensus size: 37
6327701 TATCAGAACT
* * *
6327711 AGAATCAAAATGAGAATCAGAATCAGGTGACAGAATC
1 AGAATCAGAATCAGAATCAAAATCAGGTGACAGAATC
* *
6327748 AAAATCAGAATCAGAATCAAAATTAGGTGACAGAATC
1 AGAATCAGAATCAGAATCAAAATCAGGTGACAGAATC
* *
6327785 AGAATCAGTA-CAGGTAA-CAAAATCA-G-AATCAGAATC
1 AGAATCAGAATCA-G-AATCAAAATCAGGTGA-CAGAATC
6327821 AGAATCAGAAT
1 AGAATCAGAAT
6327832 TAGGTGACAG
Statistics
Matches: 70, Mismatches: 10, Indels: 8
0.80 0.11 0.09
Matches are distributed among these distances:
35 1 0.01
36 19 0.27
37 48 0.69
38 2 0.03
ACGTcount: A:0.50, C:0.14, G:0.18, T:0.17
Consensus pattern (37 bp):
AGAATCAGAATCAGAATCAAAATCAGGTGACAGAATC
Found at i:6327848 original size:25 final size:25
Alignment explanation
Indices: 6327814--6327881 Score: 109
Period size: 25 Copynumber: 2.7 Consensus size: 25
6327804 AAATCAGAAT
* *
6327814 CAGAATCAGAATCAGAATTAGGTGA
1 CAGAATCAGAATCAGAATCAGGTAA
*
6327839 CAGAATCAGAATCAGTATCAGGTAA
1 CAGAATCAGAATCAGAATCAGGTAA
6327864 CAGAATCAGAATCAGAAT
1 CAGAATCAGAATCAGAAT
6327882 GTGAATGCAA
Statistics
Matches: 39, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 39 1.00
ACGTcount: A:0.46, C:0.15, G:0.21, T:0.19
Consensus pattern (25 bp):
CAGAATCAGAATCAGAATCAGGTAA
Found at i:6327859 original size:37 final size:36
Alignment explanation
Indices: 6327778--6327859 Score: 110
Period size: 37 Copynumber: 2.2 Consensus size: 36
6327768 AATTAGGTGA
*
6327778 CAGAATCAGAATCAGTACAGGTAACAAAATCAGAAT
1 CAGAATCAGAATCAGAACAGGTAACAAAATCAGAAT
* * *
6327814 CAGAATCAGAATCAGAATTAGGTGACAGAATCAGAAT
1 CAGAATCAGAATCAGAA-CAGGTAACAAAATCAGAAT
*
6327851 CAGTATCAG
1 CAGAATCAG
6327860 GTAACAGAAT
Statistics
Matches: 40, Mismatches: 5, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
36 16 0.40
37 24 0.60
ACGTcount: A:0.46, C:0.16, G:0.20, T:0.18
Consensus pattern (36 bp):
CAGAATCAGAATCAGAACAGGTAACAAAATCAGAAT
Found at i:6328107 original size:27 final size:26
Alignment explanation
Indices: 6328001--6328107 Score: 90
Period size: 27 Copynumber: 4.0 Consensus size: 26
6327991 CATGGCTGCC
* * *
6328001 AGAACAGATATTGTGACAGAGTCAGC-
1 AGAACAGATATTGTGGCAAAGCCA-CT
* *
6328027 AGATACAGATATTGTGGCAGAGCCACC
1 AGA-ACAGATATTGTGGCAAAGCCACT
* * *
6328054 AGAATAGATATTTTTGGCATAGCCACT
1 AGAACAGATA-TTGTGGCAAAGCCACT
*
6328081 AGAAACAGATAATGTGGCAAAGCCACT
1 AG-AACAGATATTGTGGCAAAGCCACT
6328108 TAACAGAATA
Statistics
Matches: 67, Mismatches: 10, Indels: 7
0.80 0.12 0.08
Matches are distributed among these distances:
26 10 0.15
27 50 0.75
28 7 0.10
ACGTcount: A:0.37, C:0.18, G:0.23, T:0.21
Consensus pattern (26 bp):
AGAACAGATATTGTGGCAAAGCCACT
Found at i:6329026 original size:476 final size:476
Alignment explanation
Indices: 6328134--6329085 Score: 1904
Period size: 476 Copynumber: 2.0 Consensus size: 476
6328124 ACAAAGCGAT
6328134 CGATAACTGCATTATGCTAGGTAAATAGCCATAAACTAGAGTAACATAACTGGCACACAGCCCTA
1 CGATAACTGCATTATGCTAGGTAAATAGCCATAAACTAGAGTAACATAACTGGCACACAGCCCTA
6328199 GGTAAATGTGATCGACACAGAGTCTTCAATAACCATATATTGGCACATAGCCTTATGCAAATACG
66 GGTAAATGTGATCGACACAGAGTCTTCAATAACCATATATTGGCACATAGCCTTATGCAAATACG
6328264 TTTGGCATACAGCCATAATCGGGTTGGCATAGAGCCATATGTAGGTTGGCGCAAAGCCATAATCA
131 TTTGGCATACAGCCATAATCGGGTTGGCATAGAGCCATATGTAGGTTGGCGCAAAGCCATAATCA
6328329 GAATAATTGGCTTTAAGCCATTAGTAGTTGTATCATGTTAGGCACATAGCCATCAGCGACGGTAA
196 GAATAATTGGCTTTAAGCCATTAGTAGTTGTATCATGTTAGGCACATAGCCATCAGCGACGGTAA
6328394 TATAGTCGGCACATAGCCTCGGGTCAATATGATCGACACAGAGTCATCAATAATCATATATTGGG
261 TATAGTCGGCACATAGCCTCGGGTCAATATGATCGACACAGAGTCATCAATAATCATATATTGGG
6328459 CTTAAAAGCCACCGGTGGATCCACAGTCGTCAAGGAACCATGCGATCCTAACAGATCAGATCTTC
326 CTTAAAAGCCACCGGTGGATCCACAGTCGTCAAGGAACCATGCGATCCTAACAGATCAGATCTTC
6328524 TTCCGTACAAAATCTCAACCCATGCAACATGTCATGTATGCAGAATGTCATGCCTATATTTGAAT
391 TTCCGTACAAAATCTCAACCCATGCAACATGTCATGTATGCAGAATGTCATGCCTATATTTGAAT
6328589 CAAACAATCACAGTCAAGTCA
456 CAAACAATCACAGTCAAGTCA
6328610 CGATAACTGCATTATGCTAGGTAAATAGCCATAAACTAGAGTAACATAACTGGCACACAGCCCTA
1 CGATAACTGCATTATGCTAGGTAAATAGCCATAAACTAGAGTAACATAACTGGCACACAGCCCTA
6328675 GGTAAATGTGATCGACACAGAGTCTTCAATAACCATATATTGGCACATAGCCTTATGCAAATACG
66 GGTAAATGTGATCGACACAGAGTCTTCAATAACCATATATTGGCACATAGCCTTATGCAAATACG
6328740 TTTGGCATACAGCCATAATCGGGTTGGCATAGAGCCATATGTAGGTTGGCGCAAAGCCATAATCA
131 TTTGGCATACAGCCATAATCGGGTTGGCATAGAGCCATATGTAGGTTGGCGCAAAGCCATAATCA
6328805 GAATAATTGGCTTTAAGCCATTAGTAGTTGTATCATGTTAGGCACATAGCCATCAGCGACGGTAA
196 GAATAATTGGCTTTAAGCCATTAGTAGTTGTATCATGTTAGGCACATAGCCATCAGCGACGGTAA
6328870 TATAGTCGGCACATAGCCTCGGGTCAATATGATCGACACAGAGTCATCAATAATCATATATTGGG
261 TATAGTCGGCACATAGCCTCGGGTCAATATGATCGACACAGAGTCATCAATAATCATATATTGGG
6328935 CTTAAAAGCCACCGGTGGATCCACAGTCGTCAAGGAACCATGCGATCCTAACAGATCAGATCTTC
326 CTTAAAAGCCACCGGTGGATCCACAGTCGTCAAGGAACCATGCGATCCTAACAGATCAGATCTTC
6329000 TTCCGTACAAAATCTCAACCCATGCAACATGTCATGTATGCAGAATGTCATGCCTATATTTGAAT
391 TTCCGTACAAAATCTCAACCCATGCAACATGTCATGTATGCAGAATGTCATGCCTATATTTGAAT
6329065 CAAACAATCACAGTCAAGTCA
456 CAAACAATCACAGTCAAGTCA
6329086 TTTATATATT
Statistics
Matches: 476, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
476 476 1.00
ACGTcount: A:0.33, C:0.22, G:0.20, T:0.25
Consensus pattern (476 bp):
CGATAACTGCATTATGCTAGGTAAATAGCCATAAACTAGAGTAACATAACTGGCACACAGCCCTA
GGTAAATGTGATCGACACAGAGTCTTCAATAACCATATATTGGCACATAGCCTTATGCAAATACG
TTTGGCATACAGCCATAATCGGGTTGGCATAGAGCCATATGTAGGTTGGCGCAAAGCCATAATCA
GAATAATTGGCTTTAAGCCATTAGTAGTTGTATCATGTTAGGCACATAGCCATCAGCGACGGTAA
TATAGTCGGCACATAGCCTCGGGTCAATATGATCGACACAGAGTCATCAATAATCATATATTGGG
CTTAAAAGCCACCGGTGGATCCACAGTCGTCAAGGAACCATGCGATCCTAACAGATCAGATCTTC
TTCCGTACAAAATCTCAACCCATGCAACATGTCATGTATGCAGAATGTCATGCCTATATTTGAAT
CAAACAATCACAGTCAAGTCA
Found at i:6329212 original size:27 final size:27
Alignment explanation
Indices: 6329182--6329595 Score: 390
Period size: 27 Copynumber: 15.3 Consensus size: 27
6329172 GGGGCAAAAT
* *
6329182 GGTAATTTTACCCCACAAGGGTATCTC
1 GGTAATTTTACCCTACAAGGGTATTTC
* *
6329209 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTTTACCCTACAAGGGTATTTC
*
6329236 AGT-ATTTCTACCCTACAAGGGTATTTC
1 GGTAATTT-TACCCTACAAGGGTATTTC
** * *
6329263 AATAATTCTACCCTACAGGGGTATTTC
1 GGTAATTTTACCCTACAAGGGTATTTC
* *
6329290 GGTAATTCTACCCTACAAGGGTATTTT
1 GGTAATTTTACCCTACAAGGGTATTTC
*
6329317 GGT-ATTTCTACTCTACAAGGGTATTTC
1 GGTAATTT-TACCCTACAAGGGTATTTC
6329344 GGT-ATTTCTACCCTACAAGGGTATTTC
1 GGTAATTT-TACCCTACAAGGGTATTTC
* * *
6329371 GGTAATTTTACCCTATAGGGGTATTTT
1 GGTAATTTTACCCTACAAGGGTATTTC
* * *
6329398 AGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTTTACCCTACAAGGGTATTTC
* * *
6329425 GAT-ATTTCTACCCTATAAGTGTATTTC
1 GGTAATTT-TACCCTACAAGGGTATTTC
* *
6329452 AGT-ATTTCTACCCTACAAGGGTATTTT
1 GGTAATTT-TACCCTACAAGGGTATTTC
* * * * *
6329479 AGTAATTCTACCTTACAGGGGTATTTT
1 GGTAATTTTACCCTACAAGGGTATTTC
* * * *
6329506 AGTAATTCTACCCTACAGGGGTCTTTC
1 GGTAATTTTACCCTACAAGGGTATTTC
*
6329533 GGT-ATTTTAACCCTACAAGGGTATATC
1 GGTAATTTT-ACCCTACAAGGGTATTTC
* * *
6329560 GATAATTCTACCCTACAGGGGTATTTC
1 GGTAATTTTACCCTACAAGGGTATTTC
**
6329587 AATAATTTT
1 GGTAATTTT
6329596 GTAAATCAAG
Statistics
Matches: 326, Mismatches: 53, Indels: 16
0.83 0.13 0.04
Matches are distributed among these distances:
26 13 0.04
27 299 0.92
28 14 0.04
ACGTcount: A:0.26, C:0.20, G:0.17, T:0.37
Consensus pattern (27 bp):
GGTAATTTTACCCTACAAGGGTATTTC
Found at i:6329229 original size:54 final size:54
Alignment explanation
Indices: 6329186--6329586 Score: 455
Period size: 54 Copynumber: 7.4 Consensus size: 54
6329176 CAAAATGGTA
* * *
6329186 ATTT-TACCCCACAAGGGTATCTCGGTAATTCTACCCTACAGGGGTATTTCAGT
1 ATTTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCGGT
**
6329239 ATTTCTACCCTACAAGGGTATTTCAATAATTCTACCCTACAGGGGTATTTCGGT
1 ATTTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCGGT
* * * * *
6329293 AATTCTACCCTACAAGGGTATTTTGGTATTTCTACTCTACAAGGGTATTTCGGT
1 ATTTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCGGT
* * **
6329347 ATTTCTACCCTACAAGGGTATTTCGGTAATTTTACCCTATAGGGGTATTTTAGT
1 ATTTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCGGT
* * * * * * * *
6329401 AATTCTACCCTACAGGGGTATTTCGATATTTCTACCCTATAAGTGTATTTCAGT
1 ATTTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCGGT
** * **
6329455 ATTTCTACCCTACAAGGGTATTTTAGTAATTCTACCTTACAGGGGTATTTTAGT
1 ATTTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCGGT
* * * * * * *
6329509 AATTCTACCCTACAGGGGTCTTTCGGT-ATTTTAACCCTACAAGGGTATATCGAT
1 ATTTCTACCCTACAAGGGTATTTCGGTAATTCT-ACCCTACAGGGGTATTTCGGT
* *
6329563 AATTCTACCCTACAGGGGTATTTC
1 ATTTCTACCCTACAAGGGTATTTC
6329587 AATAATTTTG
Statistics
Matches: 293, Mismatches: 53, Indels: 3
0.84 0.15 0.01
Matches are distributed among these distances:
53 8 0.03
54 285 0.97
ACGTcount: A:0.25, C:0.20, G:0.17, T:0.37
Consensus pattern (54 bp):
ATTTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCGGT
Found at i:6329322 original size:81 final size:81
Alignment explanation
Indices: 6329184--6329593 Score: 500
Period size: 81 Copynumber: 5.1 Consensus size: 81
6329174 GGCAAAATGG
* * * * * *
6329184 TAATTTTACCCCACAAGGGTATCTCGGTAATTCTACCCTACAGGGGTATTTCAGTATTTCTACCC
1 TAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAAGGGTATTTTAGTAATTCTACCC
*
6329249 TACAAGGGTATTTCAA
66 TACAGGGGTATTTCAA
* * * *
6329265 TAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAAGGGTATTTTGGTATTTCTACTC
1 TAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAAGGGTATTTTAGTAATTCTACCC
* **
6329330 TACAAGGGTATTTCGG
66 TACAGGGGTATTTCAA
* * * *
6329346 TATTTCTACCCTACAAGGGTATTTCGGTAATTTTACCCTATAGGGGTATTTTAGTAATTCTACCC
1 TAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAAGGGTATTTTAGTAATTCTACCC
*
6329411 TACAGGGGTATTTCGA
66 TACAGGGGTATTTCAA
* * * * * *
6329427 TATTTCTACCCTATAAGTGTATTTCAGTATTTCTACCCTACAAGGGTATTTTAGTAATTCTACCT
1 TAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAAGGGTATTTTAGTAATTCTACCC
* *
6329492 TACAGGGGTATTTTAG
66 TACAGGGGTATTTCAA
* * * * *
6329508 TAATTCTACCCTACAGGGGTCTTTCGGT-ATTTTAACCCTACAAGGGTA-TATCGATAATTCTAC
1 TAATTCTACCCTACAAGGGTATTTCGGTAATTCT-ACCCTACAAGGGTATTTTAG-TAATTCTAC
6329571 CCTACAGGGGTATTTCAA
64 CCTACAGGGGTATTTCAA
6329589 TAATT
1 TAATT
6329594 TTGTAAATCA
Statistics
Matches: 283, Mismatches: 44, Indels: 4
0.85 0.13 0.01
Matches are distributed among these distances:
80 6 0.02
81 277 0.98
ACGTcount: A:0.26, C:0.20, G:0.17, T:0.37
Consensus pattern (81 bp):
TAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAAGGGTATTTTAGTAATTCTACCC
TACAGGGGTATTTCAA
Found at i:6329608 original size:27 final size:27
Alignment explanation
Indices: 6329578--6329746 Score: 144
Period size: 27 Copynumber: 6.3 Consensus size: 27
6329568 TACCCTACAG
* * *
6329578 GGGTATTTCAATAATTTTGTAAATCAA
1 GGGTATTTCAGTAATTTTATAAATCGA
*** * * * *
6329605 GGGTAAAACGGTAATTCTGTAAATCGG
1 GGGTATTTCAGTAATTTTATAAATCGA
* * *
6329632 GGGTACTTT-GGTAATTTTATAAGTTGA
1 GGGTA-TTTCAGTAATTTTATAAATCGA
*
6329659 GGGTATTTCAGTAATTTTACAAATCGA
1 GGGTATTTCAGTAATTTTATAAATCGA
*
6329686 GGGTATTTCAGTAATTTTA-CAATCGA
1 GGGTATTTCAGTAATTTTATAAATCGA
* * * *
6329712 CGATATTTCGGTAATTTTACAAATCGA
1 GGGTATTTCAGTAATTTTATAAATCGA
6329739 GGGTATTT
1 GGGTATTT
6329747 GGGTAATTCG
Statistics
Matches: 112, Mismatches: 27, Indels: 6
0.77 0.19 0.04
Matches are distributed among these distances:
26 25 0.22
27 87 0.78
ACGTcount: A:0.31, C:0.09, G:0.21, T:0.38
Consensus pattern (27 bp):
GGGTATTTCAGTAATTTTATAAATCGA
Found at i:6329718 original size:26 final size:27
Alignment explanation
Indices: 6329662--6329738 Score: 120
Period size: 26 Copynumber: 2.9 Consensus size: 27
6329652 AAGTTGAGGG
* *
6329662 TATTTCAGTAATTTTACAAATCGAGGG
1 TATTTCAGTAATTTTACAAATCGACGA
6329689 TATTTCAGTAATTTTAC-AATCGACGA
1 TATTTCAGTAATTTTACAAATCGACGA
*
6329715 TATTTCGGTAATTTTACAAATCGA
1 TATTTCAGTAATTTTACAAATCGA
6329739 GGGTATTTGG
Statistics
Matches: 46, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
26 23 0.50
27 23 0.50
ACGTcount: A:0.34, C:0.13, G:0.14, T:0.39
Consensus pattern (27 bp):
TATTTCAGTAATTTTACAAATCGACGA
Found at i:6329751 original size:27 final size:27
Alignment explanation
Indices: 6329625--6329754 Score: 156
Period size: 27 Copynumber: 4.9 Consensus size: 27
6329615 GTAATTCTGT
* *
6329625 AAATCGGGGGTACTTT-GGTAATTTTAT
1 AAATCGAGGGTA-TTTCGGTAATTTTAC
* * *
6329652 AAGTTGAGGGTATTTCAGTAATTTTAC
1 AAATCGAGGGTATTTCGGTAATTTTAC
*
6329679 AAATCGAGGGTATTTCAGTAATTTTAC
1 AAATCGAGGGTATTTCGGTAATTTTAC
* *
6329706 -AATCGACGATATTTCGGTAATTTTAC
1 AAATCGAGGGTATTTCGGTAATTTTAC
*
6329732 AAATCGAGGGTATTTGGGTAATT
1 AAATCGAGGGTATTTCGGTAATT
6329755 CGGTAAACTA
Statistics
Matches: 88, Mismatches: 13, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
26 26 0.30
27 62 0.70
ACGTcount: A:0.30, C:0.09, G:0.22, T:0.38
Consensus pattern (27 bp):
AAATCGAGGGTATTTCGGTAATTTTAC
Found at i:6329753 original size:53 final size:53
Alignment explanation
Indices: 6329625--6329754 Score: 163
Period size: 53 Copynumber: 2.4 Consensus size: 53
6329615 GTAATTCTGT
* * * * *
6329625 AAATCGGGGGTACTTTGGTAATTTTATAAGTTGAGGGTATTTCAGTAATTTTAC
1 AAATCGAGGGTA-TTTGGTAATTTTACAAGTCGACGATATTTCAGTAATTTTAC
* *
6329679 AAATCGAGGGTATTTCAGTAATTTTACAA-TCGACGATATTTCGGTAATTTTAC
1 AAATCGAGGGTATTT-GGTAATTTTACAAGTCGACGATATTTCAGTAATTTTAC
6329732 AAATCGAGGGTATTTGGGTAATT
1 AAATCGAGGGTATTT-GGTAATT
6329755 CGGTAAACTA
Statistics
Matches: 66, Mismatches: 9, Indels: 3
0.85 0.12 0.04
Matches are distributed among these distances:
53 44 0.67
54 22 0.33
ACGTcount: A:0.30, C:0.09, G:0.22, T:0.38
Consensus pattern (53 bp):
AAATCGAGGGTATTTGGTAATTTTACAAGTCGACGATATTTCAGTAATTTTAC
Found at i:6341607 original size:43 final size:42
Alignment explanation
Indices: 6341559--6341726 Score: 151
Period size: 43 Copynumber: 4.0 Consensus size: 42
6341549 GTTATCGAGA
6341559 TGTGATTACATGTAAGACCATGTCTAGGACATTGGCATTGTAT
1 TGTGATTACATGTAAGACCATGTCTAGGACA-TGGCATTGTAT
** * * *
6341602 TGTGATTATGTGTAACACCATGTCTGGGACATTAGCATTGTAT
1 TGTGATTACATGTAAGACCATGTCTAGGACA-TGGCATTGTAT
* * * * * * *
6341645 TATGATTTCATGTAAGACCCTGGCTGGGACAAGGCATCG-AT
1 TGTGATTACATGTAAGACCATGTCTAGGACATGGCATTGTAT
** * *
6341686 ATGTGA-TAGTTGTAAGACCATATCTAGGATATGGCATTGTA
1 -TGTGATTACATGTAAGACCATGTCTAGGACATGGCATTGTA
6341727 CAAGCTTTAT
Statistics
Matches: 97, Mismatches: 26, Indels: 5
0.76 0.20 0.04
Matches are distributed among these distances:
41 25 0.26
42 10 0.10
43 62 0.64
ACGTcount: A:0.28, C:0.14, G:0.24, T:0.33
Consensus pattern (42 bp):
TGTGATTACATGTAAGACCATGTCTAGGACATGGCATTGTAT
Found at i:6342536 original size:13 final size:13
Alignment explanation
Indices: 6342520--6342554 Score: 52
Period size: 13 Copynumber: 2.7 Consensus size: 13
6342510 TAATTTGAAT
*
6342520 GTGGAATTGAGTA
1 GTGGAAATGAGTA
6342533 GTGGAAATGAGTA
1 GTGGAAATGAGTA
*
6342546 GTAGAAATG
1 GTGGAAATG
6342555 GTGCAGGATA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
13 20 1.00
ACGTcount: A:0.37, C:0.00, G:0.37, T:0.26
Consensus pattern (13 bp):
GTGGAAATGAGTA
Found at i:6348456 original size:43 final size:42
Alignment explanation
Indices: 6348403--6348541 Score: 158
Period size: 43 Copynumber: 3.3 Consensus size: 42
6348393 GATGTCATTA
*
6348403 CATGCAAGACCCTGTCTAGGACATTGGCATTGTATTGTGATTAT
1 CATGTAAGACCCTGTCT-GGACATTGGCATTGTATTGTGATT-T
* * *
6348447 -GTGTAAGACCATGTCTGGGACATTGGCATTGTATTTTGATTT
1 CATGTAAGACCCTGTCT-GGACATTGGCATTGTATTGTGATTT
**
6348489 CATGTAAGACCCTGTCTGCGACA-TGGCATTGGT-TTGTGATAG
1 CATGTAAGACCCTGTCTG-GACATTGGCATT-GTATTGTGATTT
6348531 CATGTAAGACC
1 CATGTAAGACC
6348542 ATATCTGGGA
Statistics
Matches: 82, Mismatches: 10, Indels: 8
0.82 0.10 0.08
Matches are distributed among these distances:
42 26 0.32
43 56 0.68
ACGTcount: A:0.24, C:0.17, G:0.25, T:0.34
Consensus pattern (42 bp):
CATGTAAGACCCTGTCTGGACATTGGCATTGTATTGTGATTT
Found at i:6353240 original size:27 final size:26
Alignment explanation
Indices: 6353203--6353296 Score: 134
Period size: 27 Copynumber: 3.5 Consensus size: 26
6353193 CACGCCACAT
* *
6353203 CAGAACAGATAATGTGACAGAGTCAC
1 CAGAACAGATAATGTGGCAGAGCCAC
6353229 CAGATACAGATAATTGTGGCAGAGCCAC
1 CAGA-ACAGATAA-TGTGGCAGAGCCAC
6353257 CAGAACAGATATATGTGGCAGAGCCAC
1 CAGAACAGATA-ATGTGGCAGAGCCAC
*
6353284 CAGATCAGATAAT
1 CAGAACAGATAAT
6353297 TATGGTATAG
Statistics
Matches: 62, Mismatches: 3, Indels: 6
0.87 0.04 0.08
Matches are distributed among these distances:
26 6 0.10
27 39 0.63
28 17 0.27
ACGTcount: A:0.39, C:0.20, G:0.23, T:0.17
Consensus pattern (26 bp):
CAGAACAGATAATGTGGCAGAGCCAC
Found at i:6353262 original size:54 final size:54
Alignment explanation
Indices: 6353203--6353313 Score: 161
Period size: 54 Copynumber: 2.1 Consensus size: 54
6353193 CACGCCACAT
* *
6353203 CAGAACAGATA-ATGTGACAGAGTCACCAGATACAGATAATTGTGGCAGAGCCAC
1 CAGAACAGATATATGTGACAGAGCCACCAGAT-CAGATAATTATGGCAGAGCCAC
* * *
6353257 CAGAACAGATATATGTGGCAGAGCCACCAGATCAGATAATTATGGTATAGCCAC
1 CAGAACAGATATATGTGACAGAGCCACCAGATCAGATAATTATGGCAGAGCCAC
6353311 CAG
1 CAG
6353314 GACGCTTCCT
Statistics
Matches: 51, Mismatches: 5, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
54 33 0.65
55 18 0.35
ACGTcount: A:0.38, C:0.21, G:0.23, T:0.18
Consensus pattern (54 bp):
CAGAACAGATATATGTGACAGAGCCACCAGATCAGATAATTATGGCAGAGCCAC
Found at i:6353308 original size:27 final size:27
Alignment explanation
Indices: 6353203--6353313 Score: 127
Period size: 27 Copynumber: 4.1 Consensus size: 27
6353193 CACGCCACAT
* * *
6353203 CAGAACAGATAA-TGTGACAGAGTCAC
1 CAGATCAGATAATTGTGGCAGAGCCAC
6353229 CAGATACAGATAATTGTGGCAGAGCCAC
1 CAGAT-CAGATAATTGTGGCAGAGCCAC
*
6353257 CAGAACAGAT-ATATGTGGCAGAGCCAC
1 CAGATCAGATAAT-TGTGGCAGAGCCAC
* * *
6353284 CAGATCAGATAATTATGGTATAGCCAC
1 CAGATCAGATAATTGTGGCAGAGCCAC
6353311 CAG
1 CAG
6353314 GACGCTTCCT
Statistics
Matches: 73, Mismatches: 8, Indels: 7
0.83 0.09 0.08
Matches are distributed among these distances:
26 6 0.08
27 49 0.67
28 18 0.25
ACGTcount: A:0.38, C:0.21, G:0.23, T:0.18
Consensus pattern (27 bp):
CAGATCAGATAATTGTGGCAGAGCCAC
Found at i:6353461 original size:26 final size:28
Alignment explanation
Indices: 6353419--6353491 Score: 66
Period size: 26 Copynumber: 2.7 Consensus size: 28
6353409 AAATTAACCG
* *
6353419 TAGGGGTATAAT-GGTAATTTTGCAC-C-
1 TAGGGGTAT-ATCAGTAATTTTCCACACA
*
6353445 TAGGGGTATATCAGTAA-CTTCCACACA
1 TAGGGGTATATCAGTAATTTTCCACACA
6353472 TAGGGGTAT-TCAAGTAATTT
1 TAGGGGTATATC-AGTAATTT
6353492 CACTATTCTT
Statistics
Matches: 38, Mismatches: 4, Indels: 8
0.76 0.08 0.16
Matches are distributed among these distances:
25 7 0.18
26 16 0.42
27 14 0.37
28 1 0.03
ACGTcount: A:0.30, C:0.14, G:0.23, T:0.33
Consensus pattern (28 bp):
TAGGGGTATATCAGTAATTTTCCACACA
Found at i:6361099 original size:27 final size:27
Alignment explanation
Indices: 6361040--6361099 Score: 86
Period size: 27 Copynumber: 2.2 Consensus size: 27
6361030 GTGACTAAGT
*
6361040 CACCACATCAGATATATGTGGCAGAGC
1 CACCAGATCAGATATATGTGGCAGAGC
*
6361067 CACCAGATCAGATA-ATTGTGGCATAGC
1 CACCAGATCAGATATA-TGTGGCAGAGC
6361094 CACCAG
1 CACCAG
6361100 GACGCTTCCT
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
26 1 0.03
27 29 0.97
ACGTcount: A:0.33, C:0.27, G:0.22, T:0.18
Consensus pattern (27 bp):
CACCAGATCAGATATATGTGGCAGAGC
Found at i:6364848 original size:39 final size:41
Alignment explanation
Indices: 6364793--6365013 Score: 221
Period size: 48 Copynumber: 5.0 Consensus size: 41
6364783 NNNNNNNNNN
6364793 ATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATAT-G
1 ATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATAG
6364833 -TATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTTGAG
1 ATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATA---T-AG
6364877 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
1 ATA--TATATGTGGTAAAGCCGAATGGCTAATGTG-AA-A--TAT-AG
*
6364925 ATATGTATATGTGGTAAAGCCGAATGGCTAATATGAAATATGTATGAG
1 ATA--TATATGTGGTAAAGCCGAATGGCTAATGTG-AA-A--TAT-AG
**
6364973 ATATATATATGTGGTAAATTCGAATGGCTAATGTGAAATAT
1 --ATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATAT
6365014 GTATAAGAGA
Statistics
Matches: 163, Mismatches: 4, Indels: 24
0.85 0.02 0.13
Matches are distributed among these distances:
39 37 0.23
42 1 0.01
44 4 0.02
45 2 0.01
46 1 0.01
47 32 0.20
48 80 0.49
49 1 0.01
50 3 0.02
51 2 0.01
ACGTcount: A:0.37, C:0.06, G:0.25, T:0.32
Consensus pattern (41 bp):
ATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATAG
Found at i:6364944 original size:48 final size:48
Alignment explanation
Indices: 6364835--6365070 Score: 366
Period size: 48 Copynumber: 4.9 Consensus size: 48
6364825 GAAATATGTA
6364835 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGT-TGAGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
6364882 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
* *
6364930 TATATGTGGTAAAGCCGAATGGCTAATATGAAATATGTATGAGATATA
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
** * *
6364978 TATATGTGGTAAATTCGAATGGCTAATGTGAAATATGTATAAGAGATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
* * * * *
6365026 TATATTTGGTAAAGCCTAATGGCTAATGAGCAATATGTAGGAGAT
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGAT
6365071 GTGTGTATAT
Statistics
Matches: 171, Mismatches: 17, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
47 38 0.22
48 133 0.78
ACGTcount: A:0.36, C:0.06, G:0.25, T:0.32
Consensus pattern (48 bp):
TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
Found at i:6368339 original size:28 final size:29
Alignment explanation
Indices: 6368295--6368408 Score: 135
Period size: 29 Copynumber: 4.0 Consensus size: 29
6368285 TACCTCTATC
* *
6368295 TGGCCCATTAAGCCC-AATCATATTCATA
1 TGGCCCATTAGGCCCAAATCACATTCATA
* *
6368323 TGGTCCATTAGGCCCAAATCACCTGT-ATA
1 TGGCCCATTAGGCCCAAATCACAT-TCATA
*
6368352 TGGCCCATTAGGCCCAAATCACATTTATA
1 TGGCCCATTAGGCCCAAATCACATTCATA
* *
6368381 TTGCCCGTTAGGCCC-AATCACATTCATA
1 TGGCCCATTAGGCCCAAATCACATTCATA
6368409 ATCATCCTCA
Statistics
Matches: 74, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
28 26 0.35
29 47 0.64
30 1 0.01
ACGTcount: A:0.29, C:0.29, G:0.14, T:0.28
Consensus pattern (29 bp):
TGGCCCATTAGGCCCAAATCACATTCATA
Found at i:6368367 original size:57 final size:57
Alignment explanation
Indices: 6368286--6368401 Score: 144
Period size: 57 Copynumber: 2.0 Consensus size: 57
6368276 AATTTCACAT
* * *
6368286 ACCTCTATCTGGCCCATTAAGCCC-AATCATATTCATATGGTCCATTAGGCCCAAATC
1 ACCTCTATATGGCCCATTAAGCCCAAATCACATTCATATGGCCCATTAGGCCC-AATC
* * * * *
6368343 ACCTGTATATGGCCCATTAGGCCCAAATCACATTTATATTGCCCGTTAGGCCCAATC
1 ACCTCTATATGGCCCATTAAGCCCAAATCACATTCATATGGCCCATTAGGCCCAATC
6368400 AC
1 AC
6368402 ATTCATAATC
Statistics
Matches: 50, Mismatches: 8, Indels: 2
0.83 0.13 0.03
Matches are distributed among these distances:
57 27 0.54
58 23 0.46
ACGTcount: A:0.28, C:0.31, G:0.14, T:0.28
Consensus pattern (57 bp):
ACCTCTATATGGCCCATTAAGCCCAAATCACATTCATATGGCCCATTAGGCCCAATC
Found at i:6369752 original size:16 final size:17
Alignment explanation
Indices: 6369724--6369762 Score: 71
Period size: 16 Copynumber: 2.4 Consensus size: 17
6369714 ACAAAAAAAG
6369724 TTTGGGATTTCGGGATT
1 TTTGGGATTTCGGGATT
6369741 TTTGGG-TTTCGGGATT
1 TTTGGGATTTCGGGATT
6369757 TTTGGG
1 TTTGGG
6369763 GGGTTACAGC
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
16 16 0.73
17 6 0.27
ACGTcount: A:0.08, C:0.05, G:0.38, T:0.49
Consensus pattern (17 bp):
TTTGGGATTTCGGGATT
Found at i:6376537 original size:40 final size:40
Alignment explanation
Indices: 6376493--6376756 Score: 360
Period size: 40 Copynumber: 6.7 Consensus size: 40
6376483 GCTCCTCGTT
* *
6376493 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAATTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
*
6376533 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
*
6376573 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
*
6376613 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* *
6376653 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * *
6376692 CAAATGCCTTC-GGATCTTAGTCCGGATATT-GTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGAT-TTAGTAAC-TCGCA
6376733 C-AA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
6376757 CATCATTCAA
Statistics
Matches: 206, Mismatches: 12, Indels: 13
0.89 0.05 0.06
Matches are distributed among these distances:
38 2 0.01
39 49 0.24
40 146 0.71
41 9 0.04
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:6384658 original size:79 final size:82
Alignment explanation
Indices: 6384547--6384731 Score: 238
Period size: 79 Copynumber: 2.3 Consensus size: 82
6384537 GCTACTCGTT
* *
6384547 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCC
* *
6384610 GGATTTAGTAAC-TCGCA
65 GGATATAGTAACTTAGCA
* **
6384627 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCG
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
* *
6384690 GATATGGTCACTTAGCA
66 GATATAGTAACTTAGCA
6384707 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
6384732 CATCATTCAA
Statistics
Matches: 92, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 3 0.03
79 55 0.60
80 34 0.37
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (82 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
GATATAGTAACTTAGCA
Found at i:6384731 original size:40 final size:40
Alignment explanation
Indices: 6384528--6384731 Score: 238
Period size: 40 Copynumber: 5.1 Consensus size: 40
6384518 CGGAATTTAA
** *
6384528 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
6384568 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
6384608 CCGGATTTAGTAACTCGCACAAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
6384647 CCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
6384687 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
6384727 CCGGA
1 CCGGA
6384732 CATCATTCAA
Statistics
Matches: 141, Mismatches: 16, Indels: 14
0.82 0.09 0.08
Matches are distributed among these distances:
38 2 0.01
39 33 0.23
40 94 0.67
41 12 0.09
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:6398146 original size:54 final size:54
Alignment explanation
Indices: 6398064--6398174 Score: 213
Period size: 54 Copynumber: 2.1 Consensus size: 54
6398054 GAACCATGAG
*
6398064 GTTGTGCATTGACTATCGTCAACTGAATAAAGTGACGATAAAGAACAAATATCC
1 GTTGTGCATTGACTACCGTCAACTGAATAAAGTGACGATAAAGAACAAATATCC
6398118 GTTGTGCATTGACTACCGTCAACTGAATAAAGTGACGATAAAGAACAAATATCC
1 GTTGTGCATTGACTACCGTCAACTGAATAAAGTGACGATAAAGAACAAATATCC
6398172 GTT
1 GTT
6398175 ACCACGTATC
Statistics
Matches: 56, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
54 56 1.00
ACGTcount: A:0.38, C:0.17, G:0.19, T:0.26
Consensus pattern (54 bp):
GTTGTGCATTGACTACCGTCAACTGAATAAAGTGACGATAAAGAACAAATATCC
Found at i:6409823 original size:2 final size:2
Alignment explanation
Indices: 6409818--6409843 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
6409808 TATATATAAA
6409818 TG TG TG TG TG TG TG TG TG TG TG TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG
6409844 CATTTGGCAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.00, C:0.00, G:0.50, T:0.50
Consensus pattern (2 bp):
TG
Found at i:6410697 original size:38 final size:38
Alignment explanation
Indices: 6410655--6410751 Score: 113
Period size: 42 Copynumber: 2.4 Consensus size: 38
6410645 TCGATATATT
* *
6410655 ATATATCCGGGTTAAATCCCGTAGGCTTCGTGCTGGTCATA
1 ATATATCCGGGTTAAATCCCGCAGGCTTAGTGCTGG---TA
*
6410696 TATATATCCGGGTTAAATCCTGCAGGCTTAGTGCTGGTA
1 -ATATATCCGGGTTAAATCCCGCAGGCTTAGTGCTGGTA
*
6410735 CTATATCCGGGCTTAAA
1 ATATATCCGGG-TTAAA
6410752 GTTCCACAGG
Statistics
Matches: 50, Mismatches: 4, Indels: 5
0.85 0.07 0.08
Matches are distributed among these distances:
38 10 0.20
39 7 0.14
42 33 0.66
ACGTcount: A:0.24, C:0.21, G:0.24, T:0.32
Consensus pattern (38 bp):
ATATATCCGGGTTAAATCCCGCAGGCTTAGTGCTGGTA
Found at i:6410740 original size:42 final size:42
Alignment explanation
Indices: 6410654--6410733 Score: 133
Period size: 42 Copynumber: 1.9 Consensus size: 42
6410644 CTCGATATAT
* *
6410654 TATATATCCGGGTTAAATCCCGTAGGCTTCGTGCTGGTCATA
1 TATATATCCGGGTTAAATCCCGCAGGCTTAGTGCTGGTCATA
*
6410696 TATATATCCGGGTTAAATCCTGCAGGCTTAGTGCTGGT
1 TATATATCCGGGTTAAATCCCGCAGGCTTAGTGCTGGT
6410734 ACTATATCCG
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
42 35 1.00
ACGTcount: A:0.21, C:0.20, G:0.25, T:0.34
Consensus pattern (42 bp):
TATATATCCGGGTTAAATCCCGCAGGCTTAGTGCTGGTCATA
Found at i:6420630 original size:40 final size:40
Alignment explanation
Indices: 6420579--6420770 Score: 212
Period size: 40 Copynumber: 4.8 Consensus size: 40
6420569 GGATATAGCT
* *
6420579 ACTCGCTCAAATGCCTTCGGGACATAGCCCGGTTATAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTA
** *
6420619 ACTCGCACAAATGCCTTCGAAACTTAACCCGGATT-TAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGG-TTATAGTA
* *
6420659 ACTCGCACCAATGCCTTCGGG-CTTAGCCCGG-AATTAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTA-TAGTA
* * *
6420698 ACTCGCACAAATGCCTTC-GGATCTTAGTCCGGATATAGTC
1 ACTCGCACAAATGCCTTCGGGA-CTTAGCCCGGTTATAGTA
* *
6420738 ACTTAGCACAAAAGCCTTCGGGACTTAGCCCGG
1 AC-TCGCACAAATGCCTTCGGGACTTAGCCCGG
6420771 ATATCATTCG
Statistics
Matches: 127, Mismatches: 17, Indels: 15
0.80 0.11 0.09
Matches are distributed among these distances:
38 2 0.02
39 31 0.24
40 65 0.51
41 26 0.20
42 3 0.02
ACGTcount: A:0.27, C:0.29, G:0.21, T:0.24
Consensus pattern (40 bp):
ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTA
Found at i:6420702 original size:79 final size:79
Alignment explanation
Indices: 6420563--6420771 Score: 253
Period size: 79 Copynumber: 2.6 Consensus size: 79
6420553 CCTTTGGAAT
* * *
6420563 TTAACCGGATATAGCTACTCGCTCAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCAC
1 TTAACCGGATATAG-TACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCAC
6420627 AAATGCCTTCGAAAC
65 AAATGCCTTCGAAAC
* *
6420642 TTAACCCGGATTTAGTAACTCGCACCAATGCCTTCGGG-CTTAGCCCGGAAT-TAGTAACTCGCA
1 TTAA-CCGGATATAGT-ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCA
* *
6420705 CAAATGCCTTCGGATC
64 CAAATGCCTTCGAAAC
* * *
6420721 TTAGTCCGGATATAGTCACTTAGCACAAAAGCCTTCGGGACTTAGCCCGGA
1 TTA-ACCGGATATAGT-AC-TCGCACAAATGCCTTCGGGACTTAGCCCGGA
6420772 TATCATTCGA
Statistics
Matches: 111, Mismatches: 13, Indels: 10
0.83 0.10 0.07
Matches are distributed among these distances:
79 55 0.50
80 45 0.41
81 11 0.10
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (79 bp):
TTAACCGGATATAGTACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACA
AATGCCTTCGAAAC
Found at i:6421607 original size:23 final size:22
Alignment explanation
Indices: 6421580--6421624 Score: 54
Period size: 23 Copynumber: 2.0 Consensus size: 22
6421570 AATATATAGG
*
6421580 TCATACCAATACATCATGTGCAA
1 TCATACAAATACAT-ATGTGCAA
* *
6421603 TCATATAAATATATATGTGCAA
1 TCATACAAATACATATGTGCAA
6421625 GAGCCGAATC
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
22 8 0.42
23 11 0.58
ACGTcount: A:0.42, C:0.18, G:0.09, T:0.31
Consensus pattern (22 bp):
TCATACAAATACATATGTGCAA
Found at i:6424822 original size:46 final size:46
Alignment explanation
Indices: 6424768--6424943 Score: 189
Period size: 46 Copynumber: 3.8 Consensus size: 46
6424758 TGGTTGAGCA
*
6424768 TCCGAACTCGTTAAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * *
6424814 TCCAAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
* *
6424859 CATCCGAACTCGCTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
6424907 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
6424944 GTGGGTTACA
Statistics
Matches: 106, Mismatches: 15, Indels: 18
0.76 0.11 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 60 0.57
47 27 0.25
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.22, C:0.22, G:0.28, T:0.28
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:6424924 original size:93 final size:93
Alignment explanation
Indices: 6424765--6424936 Score: 290
Period size: 93 Copynumber: 1.8 Consensus size: 93
6424755 GGATGGTTGA
* * *
6424765 GCATCCGAACTCGTTAAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCAAACTCGTTGAGT
1 GCATCCGAACTCGCTAAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCAAACTCGTTGAGT
6424830 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* * *
6424858 GCATCCGAACTCGCTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGCTAAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCAAACTCGTTGAGT
6424923 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
6424937 CTTATGGGTG
Statistics
Matches: 73, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.22, C:0.22, G:0.28, T:0.27
Consensus pattern (93 bp):
GCATCCGAACTCGCTAAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCAAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:6427341 original size:38 final size:38
Alignment explanation
Indices: 6427293--6427369 Score: 136
Period size: 38 Copynumber: 2.0 Consensus size: 38
6427283 GACTACTTCT
*
6427293 GCGGATAGTGTGGGAAATACGAGATTTGTTAAACCCGA
1 GCGGATAGTGTGGGAAATAAGAGATTTGTTAAACCCGA
*
6427331 GCGGCTAGTGTGGGAAATAAGAGATTTGTTAAACCCGA
1 GCGGATAGTGTGGGAAATAAGAGATTTGTTAAACCCGA
6427369 G
1 G
6427370 TGCCAGCGGT
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
38 37 1.00
ACGTcount: A:0.31, C:0.13, G:0.32, T:0.23
Consensus pattern (38 bp):
GCGGATAGTGTGGGAAATAAGAGATTTGTTAAACCCGA
Found at i:6431810 original size:40 final size:40
Alignment explanation
Indices: 6431715--6431858 Score: 163
Period size: 40 Copynumber: 3.6 Consensus size: 40
6431705 TGAATGCTGC
* *
6431715 CCGGGCTAAGTCCCGAAGGC--TTGTGCTAAGTGAC-AATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAA-AT
*
6431754 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAAT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAAT
* *
6431794 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAATTACTATAA-
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AAT
*
6431834 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
6431859 AATGAGGAGC
Statistics
Matches: 91, Mismatches: 8, Indels: 11
0.83 0.07 0.10
Matches are distributed among these distances:
39 18 0.20
40 63 0.69
41 10 0.11
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
Found at i:6441353 original size:39 final size:40
Alignment explanation
Indices: 6441228--6441410 Score: 203
Period size: 40 Copynumber: 4.6 Consensus size: 40
6441218 GCTACTTGCT
* *
6441228 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGTAACTCGCA
* * *
6441268 CAAATGCCTTCGGGACTTAACCTGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
* *
6441308 CCAATGCGTTCGGG-CTTAGCCCGGAATTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
* * *
6441347 CAAATGCCTTC-GGATCTTAGTCCGGAGA-TAGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGA-ATTAGTAAC-TCGCA
*
6441388 CAAAAGCCTTCGGGACTTAGCCC
1 CAAATGCCTTCGGGACTTAGCCC
6441411 AGATATCATT
Statistics
Matches: 122, Mismatches: 15, Indels: 11
0.82 0.10 0.07
Matches are distributed among these distances:
38 2 0.02
39 31 0.25
40 62 0.51
41 24 0.20
42 3 0.02
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
Found at i:6443451 original size:16 final size:16
Alignment explanation
Indices: 6443395--6443451 Score: 71
Period size: 16 Copynumber: 3.6 Consensus size: 16
6443385 CACGACTCGT
*
6443395 TTTATTTATTATTT-TC
1 TTTATTT-TTATTTCTA
* *
6443411 TTTACTTTTATATCTA
1 TTTATTTTTATTTCTA
6443427 TTTATTTTTATTTCTA
1 TTTATTTTTATTTCTA
6443443 TTTATTTTT
1 TTTATTTTT
6443452 GAAGACTCAT
Statistics
Matches: 35, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
15 5 0.14
16 30 0.86
ACGTcount: A:0.19, C:0.07, G:0.00, T:0.74
Consensus pattern (16 bp):
TTTATTTTTATTTCTA
Found at i:6445829 original size:49 final size:48
Alignment explanation
Indices: 6445699--6445842 Score: 189
Period size: 49 Copynumber: 2.9 Consensus size: 48
6445689 TCCAATGTGA
*
6445699 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCTGAAAACTGT
1 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACC---AGACTGT
* * * * *
6445750 GATCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGACTGTT
1 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGACTG-T
*
6445799 GGTCGCATGTGTAGTGCTAAGTGCAGGCTACTATGCGTACCAGA
1 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGA
6445843 TAGCTTCGGC
Statistics
Matches: 80, Mismatches: 12, Indels: 4
0.83 0.12 0.04
Matches are distributed among these distances:
48 5 0.06
49 39 0.49
51 36 0.45
ACGTcount: A:0.24, C:0.20, G:0.28, T:0.27
Consensus pattern (48 bp):
GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGACTGT
Found at i:6464356 original size:93 final size:93
Alignment explanation
Indices: 6464241--6464412 Score: 245
Period size: 93 Copynumber: 1.8 Consensus size: 93
6464231 GCCCATAAGT
* * * * * **
6464241 GAACTCGGAGTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTTAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACCCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCAAACTCAACTCAA
6464306 CGAGCTCGGATGCCTAGTTACATCTCAC
66 CGAGCTCGGATGCCTAGTTACATCTCAC
* *
6464334 GAACTCGGACTCAACCCAACGAGTTCTGACATTCGCATCCATAAGTGAACTCAAACTCAACTCAA
1 GAACTCGGACTCAACCCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCAAACTCAACTCAA
* *
6464399 CGGGTTCGGATGCC
66 CGAGCTCGGATGCC
6464413 CAAATATCCC
Statistics
Matches: 68, Mismatches: 11, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
93 68 1.00
ACGTcount: A:0.28, C:0.30, G:0.20, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACCCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCAAACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCAC
Found at i:6466868 original size:30 final size:29
Alignment explanation
Indices: 6466822--6466912 Score: 89
Period size: 30 Copynumber: 3.1 Consensus size: 29
6466812 AACAAAGATA
*
6466822 ATAAGAAAACC-GAATAAAGAAATCCAAG
1 ATAAGAAACCCGGAATAAAGAAATCCAAG
* *
6466850 ATAGAGAAACCCGGAATAAATAAATCCAAA
1 ATA-AGAAACCCGGAATAAAGAAATCCAAG
*
6466880 ATAA-AAAGCTCCAGG-ATAAAGAAACCCAAG
1 ATAAGAAA-C-CC-GGAATAAAGAAATCCAAG
6466910 ATA
1 ATA
6466913 CGATACTATG
Statistics
Matches: 52, Mismatches: 6, Indels: 8
0.79 0.09 0.12
Matches are distributed among these distances:
28 6 0.12
29 9 0.17
30 35 0.67
31 2 0.04
ACGTcount: A:0.57, C:0.16, G:0.14, T:0.12
Consensus pattern (29 bp):
ATAAGAAACCCGGAATAAAGAAATCCAAG
Found at i:6466912 original size:15 final size:15
Alignment explanation
Indices: 6466835--6466912 Score: 52
Period size: 15 Copynumber: 5.2 Consensus size: 15
6466825 AGAAAACCGA
*
6466835 ATAAAGAAATCCAAG
1 ATAAAGAAACCCAAG
* *
6466850 ATAGAGAAACCC-GG
1 ATAAAGAAACCCAAG
* * *
6466864 AATAAATAAATCCAAA
1 -ATAAAGAAACCCAAG
* *
6466880 ATAAA-AAGCTCCAGG
1 ATAAAGAAAC-CCAAG
6466895 ATAAAGAAACCCAAG
1 ATAAAGAAACCCAAG
6466910 ATA
1 ATA
6466913 CGATACTATG
Statistics
Matches: 45, Mismatches: 14, Indels: 8
0.67 0.21 0.12
Matches are distributed among these distances:
14 3 0.07
15 39 0.87
16 3 0.07
ACGTcount: A:0.56, C:0.17, G:0.14, T:0.13
Consensus pattern (15 bp):
ATAAAGAAACCCAAG
Found at i:6469275 original size:27 final size:27
Alignment explanation
Indices: 6469244--6469421 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
6469234 TAAATTGTAC
6469244 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
6469271 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
6469297 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
6469325 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
6469353 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
6469380 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
6469407 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
6469422 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:6469358 original size:82 final size:81
Alignment explanation
Indices: 6469245--6469400 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
6469235 AAATTGTACA
* *
6469245 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
6469309 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
6469326 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
6469391 TGCGAGTTGA
65 TGCGAATTGA
6469401 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:6469412 original size:82 final size:81
Alignment explanation
Indices: 6469241--6469421 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
6469231 GATTAAATTG
* *
6469241 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
6469306 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
6469322 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
6469386 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
6469404 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
6469422 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:6473276 original size:46 final size:46
Alignment explanation
Indices: 6473209--6473476 Score: 237
Period size: 46 Copynumber: 5.8 Consensus size: 46
6473199 TGTAACCCGC
*
6473209 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCGT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
*
6473255 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG--G-C--GTTCGCAT
* * * * * * *
6473305 -C-TCA-CGAACTCGGACTCAACCCAACGAGTTCTGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
*
6473348 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG--G-C--GTTCGCAT
* * * * * * *
6473398 -C-TCA-CGAACTCGGACTCAACCCAACGAGTTCTGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
6473441 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG
6473477 ATGCCTAGTT
Statistics
Matches: 173, Mismatches: 31, Indels: 36
0.72 0.13 0.15
Matches are distributed among these distances:
42 4 0.02
43 6 0.03
44 4 0.02
45 4 0.02
46 86 0.50
47 50 0.29
48 5 0.03
49 4 0.02
50 5 0.03
51 5 0.03
ACGTcount: A:0.28, C:0.31, G:0.20, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
Found at i:6473330 original size:93 final size:93
Alignment explanation
Indices: 6473217--6473507 Score: 528
Period size: 93 Copynumber: 3.1 Consensus size: 93
6473207 GCCCATAAGT
* * * * * *
6473217 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCGTCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACCCAACGAGTTCTGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
6473282 CGAGCTCGGATGCCTAGTTACATCTCAC
66 CGAGCTCGGATGCCTAGTTACATCTCAC
6473310 GAACTCGGACTCAACCCAACGAGTTCTGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACCCAACGAGTTCTGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
6473375 CGAGCTCGGATGCCTAGTTACATCTCAC
66 CGAGCTCGGATGCCTAGTTACATCTCAC
6473403 GAACTCGGACTCAACCCAACGAGTTCTGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACCCAACGAGTTCTGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
6473468 CGAGCTCGGATGCCTAGTTACATCTCAC
66 CGAGCTCGGATGCCTAGTTACATCTCAC
6473496 GAACTCGGACTC
1 GAACTCGGACTC
6473508 TACGGAATGC
Statistics
Matches: 192, Mismatches: 6, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
93 192 1.00
ACGTcount: A:0.28, C:0.31, G:0.20, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACCCAACGAGTTCTGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCAC
Found at i:6473332 original size:47 final size:47
Alignment explanation
Indices: 6473263--6473507 Score: 240
Period size: 47 Copynumber: 5.3 Consensus size: 47
6473253 GTCCATAAGT
6473263 GAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCAC
1 GAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCAC
* * * * * *
6473310 GAACTCGGACTCAACCCAACGAGTTC---TGAC-A-TTCGCATCCATAAGT
1 GAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTT-ACAT-C-TCA-C
6473356 GAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCAC
1 GAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCAC
* * * * * *
6473403 GAACTCGGACTCAACCCAACGAGTTC---TGAC-A-TTCGCATCCATAAGT
1 GAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTT-ACAT-C-TCA-C
6473449 GAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCAC
1 GAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCAC
6473496 GAACTCGGACTC
1 GAACTCGGACTC
6473508 TACGGAATGC
Statistics
Matches: 156, Mismatches: 24, Indels: 36
0.72 0.11 0.17
Matches are distributed among these distances:
42 4 0.03
43 8 0.05
44 8 0.05
45 4 0.03
46 48 0.31
47 60 0.38
48 4 0.03
49 8 0.05
50 8 0.05
51 4 0.03
ACGTcount: A:0.29, C:0.31, G:0.19, T:0.21
Consensus pattern (47 bp):
GAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCAC
Found at i:6480247 original size:53 final size:53
Alignment explanation
Indices: 6480151--6480283 Score: 203
Period size: 53 Copynumber: 2.5 Consensus size: 53
6480141 ATCTTACGGC
* *
6480151 GGGATTACCAATCCAGGCTAATTCTCCCGTAATATCAACTCATAGGGTGATGTT
1 GGGATTACCAATACAGGCTAAATC-CCCGTAATATCAACTCATAGGGTGATGTT
**
6480205 GGGATTACCAATTTAGGCTAAATCCCCGTAATATCAACTCATAGGGTGATGTT
1 GGGATTACCAATACAGGCTAAATCCCCGTAATATCAACTCATAGGGTGATGTT
* *
6480258 AGGATTACTAATACAGGCTAAATCCC
1 GGGATTACCAATACAGGCTAAATCCC
6480284 TTGTAGCGAC
Statistics
Matches: 72, Mismatches: 7, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
53 51 0.71
54 21 0.29
ACGTcount: A:0.31, C:0.21, G:0.20, T:0.29
Consensus pattern (53 bp):
GGGATTACCAATACAGGCTAAATCCCCGTAATATCAACTCATAGGGTGATGTT
Found at i:6482314 original size:24 final size:24
Alignment explanation
Indices: 6482282--6482356 Score: 132
Period size: 24 Copynumber: 3.1 Consensus size: 24
6482272 GTCTGTCAGT
*
6482282 AGAGGATTTAGGAGCTAATAAGGG
1 AGAGGATTTAGGAGCTGATAAGGG
6482306 AGAGGATTTAGGAGCTGATAAGGG
1 AGAGGATTTAGGAGCTGATAAGGG
*
6482330 AGAGGATTTAGGAGCTGATTAGGG
1 AGAGGATTTAGGAGCTGATAAGGG
6482354 AGA
1 AGA
6482357 ACAGTGTTGG
Statistics
Matches: 49, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 49 1.00
ACGTcount: A:0.35, C:0.04, G:0.40, T:0.21
Consensus pattern (24 bp):
AGAGGATTTAGGAGCTGATAAGGG
Found at i:6483871 original size:26 final size:26
Alignment explanation
Indices: 6483764--6483872 Score: 146
Period size: 27 Copynumber: 4.1 Consensus size: 26
6483754 AGGAAGCATC
** *
6483764 CTGGTGGCAATGCCACAATTATCTGAT
1 CTGGTGGCTCTGCCAC-ATTATCTGTT
6483791 CTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTCTGCCACAT-TATCTGTT
6483818 CTGGTGGCTCTGCCACGATTATCTGTT
1 CTGGTGGCTCTGCCAC-ATTATCTGTT
* *
6483845 CTGGTGACTCTGTCACATTATCTGTT
1 CTGGTGGCTCTGCCACATTATCTGTT
6483871 CT
1 CT
6483873 AGCAGCCATT
Statistics
Matches: 75, Mismatches: 5, Indels: 5
0.88 0.06 0.06
Matches are distributed among these distances:
26 14 0.19
27 59 0.79
28 2 0.03
ACGTcount: A:0.17, C:0.25, G:0.22, T:0.37
Consensus pattern (26 bp):
CTGGTGGCTCTGCCACATTATCTGTT
Found at i:6491096 original size:53 final size:53
Alignment explanation
Indices: 6490925--6491120 Score: 194
Period size: 53 Copynumber: 3.6 Consensus size: 53
6490915 AGGATGGCAA
* * * * * *
6490925 GTAAGACCATGCCAAGGCATGGCATTGGTAAGCTTTACAAGGCAAGGAAATCAT
1 GTAAGACCATGCCAAGACATGGCAATGGTAAG-TTCATAAGGCAAGGATACCAT
* * * * * * * *
6490979 GTAAGACCATGTCAAGACATGGCATTGATAAACTACGATAAGGCAAAGTTCCCAT
1 GTAAGACCATGCCAAGACATGGCAATGGT-AAGTTC-ATAAGGCAAGGATACCAT
* * *
6491034 GTAAGACCATGCCAAGGCATGGCAATGGTGAGTTCATAAGGCAAGGATACCAC
1 GTAAGACCATGCCAAGACATGGCAATGGTAAGTTCATAAGGCAAGGATACCAT
* *
6491087 GTAAGACCATGTCAAGACATGACAATGGTAAGTT
1 GTAAGACCATGCCAAGACATGGCAATGGTAAGTT
6491121 TAAAAAGGAA
Statistics
Matches: 113, Mismatches: 27, Indels: 5
0.78 0.19 0.03
Matches are distributed among these distances:
53 44 0.39
54 30 0.27
55 39 0.35
ACGTcount: A:0.36, C:0.19, G:0.24, T:0.20
Consensus pattern (53 bp):
GTAAGACCATGCCAAGACATGGCAATGGTAAGTTCATAAGGCAAGGATACCAT
Found at i:6492433 original size:23 final size:23
Alignment explanation
Indices: 6492407--6492462 Score: 87
Period size: 23 Copynumber: 2.4 Consensus size: 23
6492397 GAGATGTTAC
6492407 ATTTATTGGTATTAGAGCAAGAG
1 ATTTATTGGTATTAGAGCAAGAG
*
6492430 ATTTATTGTTATTAGAGCAAGAG
1 ATTTATTGGTATTAGAGCAAGAG
6492453 -TTTAGTTGGT
1 ATTTA-TTGGT
6492463 TCTTAGAATA
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
22 4 0.13
23 26 0.87
ACGTcount: A:0.30, C:0.04, G:0.25, T:0.41
Consensus pattern (23 bp):
ATTTATTGGTATTAGAGCAAGAG
Found at i:6496167 original size:46 final size:46
Alignment explanation
Indices: 6496100--6496274 Score: 201
Period size: 46 Copynumber: 3.8 Consensus size: 46
6496090 AACCCGCCCC
* * *
6496100 TAAGTGAACTCGGACTCAACTCAATGAGCTCGGGTGTTCGTATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGTTCGTATCCA
* * *
6496146 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGT-TACA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATG-TTCGTATCCA
* * ** *
6496192 TTTCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 --TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGTTCGTATCCA
*
6496239 TAAGTGAACGCGGACTCAACTCAACGAGTTCGGATG
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATG
6496275 CTCAACCATC
Statistics
Matches: 105, Mismatches: 19, Indels: 10
0.78 0.14 0.07
Matches are distributed among these distances:
45 2 0.02
46 66 0.63
47 35 0.33
48 2 0.02
ACGTcount: A:0.29, C:0.26, G:0.22, T:0.23
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGTTCGTATCCA
Found at i:6496213 original size:93 final size:93
Alignment explanation
Indices: 6496105--6496275 Score: 279
Period size: 93 Copynumber: 1.8 Consensus size: 93
6496095 GCCCCTAAGT
* *** * *
6496105 GAACTCGGACTCAACTCAATGAGCTCGGGTGTTCGTATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACGCGGACTCAACTCAA
6496170 CGAGTTCGGATGCCTAGTTACATTTCAC
66 CGAGTTCGGATGCCTAGTTACATTTCAC
*
6496198 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACGCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACGCGGACTCAACTCAA
6496263 CGAGTTCGGATGC
66 CGAGTTCGGATGC
6496276 TCAACCATCC
Statistics
Matches: 71, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.28, C:0.27, G:0.22, T:0.23
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACGCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATTTCAC
Found at i:6496727 original size:30 final size:30
Alignment explanation
Indices: 6496693--6496752 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
6496683 ATTTAATACG
6496693 AACTTTGGAAAAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
* * *
6496723 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
6496753 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.30, C:0.25, G:0.08, T:0.37
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Found at i:6502867 original size:46 final size:46
Alignment explanation
Indices: 6502800--6502970 Score: 206
Period size: 46 Copynumber: 3.7 Consensus size: 46
6502790 AACCCGCCCC
*
6502800 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCATCCA
*
6502846 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG--G-C--GTTCGCATCCA
* * * *
6502894 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCATCCA
*
6502939 TAAGTTAACTCGGACTCAACTCAACGAGTTCG
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCG
6502971 AATGCTCAGC
Statistics
Matches: 106, Mismatches: 10, Indels: 18
0.79 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 3 0.03
44 2 0.02
45 2 0.02
46 58 0.55
47 28 0.26
48 3 0.03
49 2 0.02
50 3 0.03
51 3 0.03
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCATCCA
Found at i:6502912 original size:93 final size:93
Alignment explanation
Indices: 6502805--6502975 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 93
6502795 GCCCCTAAGT
* *
6502805 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
6502870 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGAATGCCTAGTTACATCTCAC
* *
6502898 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTTAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
6502963 CGAGTTCGAATGC
66 CGAGTTCGAATGC
6502976 TCAGCCATCC
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGAATGCCTAGTTACATCTCAC
Done.