Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr9
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 91122320
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2661692 characters in sequence are not A, C, G, or T
File 193 of 279
Found at i:63234862 original size:46 final size:46
Alignment explanation
Indices: 63234768--63234990 Score: 162
Period size: 46 Copynumber: 5.3 Consensus size: 46
63234758 ATATAATATC
* * * *
63234768 CAAACAATAACAACAAAATAATAGTAATATAATAACAAAATAGCAA
1 CAAACAATAACAATAAAATAAGAGTAATATAATAACAAAACAACAA
* *
63234814 CAAACAATAACAATAAAATAAGAGT--TAT-AT-----AATATC--
1 CAAACAATAACAATAAAATAAGAGTAATATAATAACAAAACAACAA
* * * *
63234850 CAAACAATAACAACAAAATAATAGTAATATAATAACAAAATAGCAA
1 CAAACAATAACAATAAAATAAGAGTAATATAATAACAAAACAACAA
* *
63234896 CAAACAATAACAATAAAATAAGAGT--TAT-AT-----AATATC--
1 CAAACAATAACAATAAAATAAGAGTAATATAATAACAAAACAACAA
* * * *
63234932 CAAACAATAACAACAAAATAATAGTAATATAATAACAAAATAGCAA
1 CAAACAATAACAATAAAATAAGAGTAATATAATAACAAAACAACAA
63234978 CAAACAATAACAA
1 CAAACAATAACAA
63234991 AACAATAGTA
Statistics
Matches: 145, Mismatches: 12, Indels: 40
0.74 0.06 0.20
Matches are distributed among these distances:
36 46 0.32
38 16 0.11
39 4 0.03
43 4 0.03
44 16 0.11
46 59 0.41
ACGTcount: A:0.63, C:0.13, G:0.04, T:0.19
Consensus pattern (46 bp):
CAAACAATAACAATAAAATAAGAGTAATATAATAACAAAACAACAA
Found at i:63243167 original size:15 final size:16
Alignment explanation
Indices: 63243133--63243167 Score: 56
Period size: 15 Copynumber: 2.3 Consensus size: 16
63243123 ATGGTAAGAA
63243133 AATATTATTTTATATT
1 AATATTATTTTATATT
63243149 -ATATTATTTTA-ATT
1 AATATTATTTTATATT
63243163 AATAT
1 AATAT
63243168 AATTATTAAG
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
14 3 0.17
15 15 0.83
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (16 bp):
AATATTATTTTATATT
Found at i:63248082 original size:16 final size:16
Alignment explanation
Indices: 63248061--63248110 Score: 54
Period size: 15 Copynumber: 3.4 Consensus size: 16
63248051 CGAAAATGAT
63248061 ATAATAAGTATAATAA
1 ATAATAAGTATAATAA
*
63248077 ATAAT-AGTGTAA-AA
1 ATAATAAGTATAATAA
*
63248091 A-AATAA-TACAATAA
1 ATAATAAGTATAATAA
63248105 ATAATA
1 ATAATA
63248111 GGAAAATAAC
Statistics
Matches: 28, Mismatches: 3, Indels: 7
0.74 0.08 0.18
Matches are distributed among these distances:
13 6 0.21
14 7 0.25
15 10 0.36
16 5 0.18
ACGTcount: A:0.64, C:0.02, G:0.06, T:0.28
Consensus pattern (16 bp):
ATAATAAGTATAATAA
Found at i:63249603 original size:133 final size:132
Alignment explanation
Indices: 63249349--63249972 Score: 834
Period size: 133 Copynumber: 4.7 Consensus size: 132
63249339 GATCTGCTGT
* * * * *
63249349 AATTTGATCTGCTTTACTCATGCTCAGTAAAGATAAGATCTGTATGTTTAGCCTACTTCACTCCT
1 AATTTGATCTGCTTCACTCCTGCTCAGTGAAGATAAGATCTGTA--TATAGCCTGCTTCACTCCT
* * ** * * * * ** * * *
63249414 GCTCAATGAAGATAAGGCTGGTGGCTGAAATCTACTCCATTGCCGATATATAGAGATAAGACTCG
64 GCTCAGTGAAGATAAGGCTGATGATTGGAATCTGCTCCATCGCCGGTACGTGGAGATAAGATTCA
63249479 CCAA
129 CCAA
* *
63249483 AATTTGATCTGCTTCACTCTTGCTCAGTGAAGATAAGATCTAGTATATAGCCTGCTCCACTCCTG
1 AATTTGATCTGCTTCACTCCTGCTCAGTGAAGATAAGATCT-GTATATAGCCTGCTTCACTCCTG
* * *
63249548 CTCAGTGAAGATAAGGCTGGTGATTGGAATCTGCTCAATCGCCGGTACGTGGAGATAAGATTCAT
65 CTCAGTGAAGATAAGGCTGATGATTGGAATCTGCTCCATCGCCGGTACGTGGAGATAAGATTCAC
63249613 CAA
130 CAA
* * *
63249616 AATTTGATCTGCTTCACTTCTGCTCAGTGAAGATAAGATCTGGTATTTAGCCTGCTCCACTCCTG
1 AATTTGATCTGCTTCACTCCTGCTCAGTGAAGATAAGATCT-GTATATAGCCTGCTTCACTCCTG
* * * *
63249681 CTCAGTGAAGACAAGGCTGATGATTGGAATCTGTTCCATCGTCGGTACGTGGAGATAAGATTCAT
65 CTCAGTGAAGATAAGGCTGATGATTGGAATCTGCTCCATCGCCGGTACGTGGAGATAAGATTCAC
63249746 CAA
130 CAA
* * *
63249749 AATTCGATCTGCTTCATTCCTGCTCAGTGAAGATAAGATCTGGTTTATAGCCTGCTTCACTCCTG
1 AATTTGATCTGCTTCACTCCTGCTCAGTGAAGATAAGATCT-GTATATAGCCTGCTTCACTCCTG
63249814 CTCAGTGAAGATAAGGCTGATGATTGGAATCTGCTCCATCGCCGGTACGTGGAGATAAGATTCAC
65 CTCAGTGAAGATAAGGCTGATGATTGGAATCTGCTCCATCGCCGGTACGTGGAGATAAGATTCAC
63249879 CAA
130 CAA
* * * *
63249882 AATTTGATCTGCTCCGCTCCTGCTCAGCGAAGATAAGATCTGCTATATTTAACCTGCTTCACTCC
1 AATTTGATCTGCTTCACTCCTGCTCAGTGAAGATAAGATCTG-TATA--TAGCCTGCTTCACTCC
*
63249947 TGCTTAGTGAAGATAAGGCTGATGAT
63 TGCTCAGTGAAGATAAGGCTGATGAT
63249973 ATCTGTAATC
Statistics
Matches: 439, Mismatches: 47, Indels: 7
0.89 0.10 0.01
Matches are distributed among these distances:
132 1 0.00
133 357 0.81
134 38 0.09
135 43 0.10
ACGTcount: A:0.27, C:0.22, G:0.21, T:0.30
Consensus pattern (132 bp):
AATTTGATCTGCTTCACTCCTGCTCAGTGAAGATAAGATCTGTATATAGCCTGCTTCACTCCTGC
TCAGTGAAGATAAGGCTGATGATTGGAATCTGCTCCATCGCCGGTACGTGGAGATAAGATTCACC
AA
Found at i:63249682 original size:43 final size:43
Alignment explanation
Indices: 63249490--63249828 Score: 165
Period size: 43 Copynumber: 7.7 Consensus size: 43
63249480 CAAAATTTGA
* * *
63249490 TCTGCTTCACTCTTGCTCAGTGAAGATAAGATCTAGTATATAG
1 TCTGCTTCACTCCTGCTCAGTGAAGATAAGATCTGGTATTTAG
* * * * *
63249533 CCTGCTCCACTCCTGCTCAGTGAAGATAAG-GCTGGTGATTGGAA
1 TCTGCTTCACTCCTGCTCAGTGAAGATAAGATCTGGT-ATT-TAG
* * * * ***
63249577 TCTGC-TCAATCGCCGGT-ACGTGGAGATAAGATTCATCAAAATTT-G
1 TCTGCTTCACTC-CTGCTCA-GTGAAGATAAGA-TC-T-GGTATTTAG
*
63249622 ATCTGCTTCACTTCTGCTCAGTGAAGATAAGATCTGGTATTTAG
1 -TCTGCTTCACTCCTGCTCAGTGAAGATAAGATCTGGTATTTAG
* * * * * * *
63249666 CCTGCTCCACTCCTGCTCAGTGAAGACAAG-GCTGATGATTGGAA
1 TCTGCTTCACTCCTGCTCAGTGAAGATAAGATCTGGT-ATT-TAG
* * * *** * *
63249710 TCTG-TTC-CATCGTCGGT-ACGTGGAGATAAGATTCATCAAAATTCG
1 TCTGCTTCAC-TCCT-GCTCA-GTGAAGATAAGA-TC-TGGTATTTAG
*
63249755 ATCTGCTTCATTCCTGCTCAGTGAAGATAAGATCTGGT-TTATAG
1 -TCTGCTTCACTCCTGCTCAGTGAAGATAAGATCTGGTATT-TAG
*
63249799 CCTGCTTCACTCCTGCTCAGTGAAGATAAG
1 TCTGCTTCACTCCTGCTCAGTGAAGATAAG
63249829 GCTGATGATT
Statistics
Matches: 211, Mismatches: 60, Indels: 50
0.66 0.19 0.16
Matches are distributed among these distances:
42 9 0.04
43 102 0.48
44 38 0.18
45 4 0.02
46 40 0.19
47 18 0.09
ACGTcount: A:0.26, C:0.22, G:0.22, T:0.30
Consensus pattern (43 bp):
TCTGCTTCACTCCTGCTCAGTGAAGATAAGATCTGGTATTTAG
Found at i:63261912 original size:16 final size:16
Alignment explanation
Indices: 63261891--63261940 Score: 54
Period size: 15 Copynumber: 3.4 Consensus size: 16
63261881 CGAAAATGAT
63261891 ATAATAAGTATAATAA
1 ATAATAAGTATAATAA
*
63261907 ATAAT-AGTGTAA-AA
1 ATAATAAGTATAATAA
*
63261921 A-AATAA-TACAATAA
1 ATAATAAGTATAATAA
63261935 ATAATA
1 ATAATA
63261941 GGAAAATAAC
Statistics
Matches: 28, Mismatches: 3, Indels: 7
0.74 0.08 0.18
Matches are distributed among these distances:
13 6 0.21
14 7 0.25
15 10 0.36
16 5 0.18
ACGTcount: A:0.64, C:0.02, G:0.06, T:0.28
Consensus pattern (16 bp):
ATAATAAGTATAATAA
Found at i:63263805 original size:14 final size:15
Alignment explanation
Indices: 63263788--63263820 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
63263778 TTATTCCAAA
63263788 AATAATATT-ATTTT
1 AATAATATTAATTTT
*
63263802 AATAATTTTAATTTT
1 AATAATATTAATTTT
63263817 AATA
1 AATA
63263821 TTAAATTAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 8 0.47
15 9 0.53
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (15 bp):
AATAATATTAATTTT
Found at i:63272291 original size:16 final size:16
Alignment explanation
Indices: 63272270--63272301 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
63272260 AATTAATGTA
*
63272270 AATTAATTAATTTTCT
1 AATTAAATAATTTTCT
63272286 AATTAAATAATTTTCT
1 AATTAAATAATTTTCT
63272302 TAACCCGATT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.41, C:0.06, G:0.00, T:0.53
Consensus pattern (16 bp):
AATTAAATAATTTTCT
Found at i:63274957 original size:52 final size:52
Alignment explanation
Indices: 63274854--63275003 Score: 210
Period size: 52 Copynumber: 2.8 Consensus size: 52
63274844 CTTACACGGT
* *
63274854 TCACATATCATACCGAAGCCATATCCCAGACATGGTCTTATACGGAATCACATTA
1 TCACAT-T-ATACCGATGCCATAGCCCAG-CATGGTCTTATACGGAATCACATTA
*
63274909 TCACATTATACCGATGCCATAGCCCAGCATGGTCTTATACGGAGTCACATTA
1 TCACATTATACCGATGCCATAGCCCAGCATGGTCTTATACGGAATCACATTA
** *
63274961 TCACATTGCACCGATGCCATAGCCCAGCTATGGTCTTAAACGG
1 TCACATTATACCGATGCCATAGCCCAGC-ATGGTCTTATACGG
63275004 GCGCACTTAT
Statistics
Matches: 88, Mismatches: 6, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
52 50 0.57
53 31 0.35
54 1 0.01
55 6 0.07
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (52 bp):
TCACATTATACCGATGCCATAGCCCAGCATGGTCTTATACGGAATCACATTA
Found at i:63282468 original size:52 final size:52
Alignment explanation
Indices: 63282365--63282529 Score: 217
Period size: 52 Copynumber: 3.1 Consensus size: 52
63282355 CTTACACGGT
* * *
63282365 TCACATATCATACCGAAGCCATATCCCAGACATGGTCTTATACGGAATCACATTA
1 TCACAT-T-ATACCGATGCCATAGCCCAG-CATGGTCTTATACGGAGTCACATTA
63282420 TCACATTATACCGATGCCATAGCCCAGCATGGTCTTATACGGAGTCACATTA
1 TCACATTATACCGATGCCATAGCCCAGCATGGTCTTATACGGAGTCACATTA
** *
63282472 TCACATTGCACCGATGCCATAGCCCAGCTATGGTCTTAAACGG-G-CACACTTA
1 TCACATTATACCGATGCCATAGCCCAGC-ATGGTCTTATACGGAGTCACA-TTA
63282524 TCACAT
1 TCACAT
63282530 ATTTTTCGTC
Statistics
Matches: 102, Mismatches: 6, Indels: 7
0.89 0.05 0.06
Matches are distributed among these distances:
51 4 0.04
52 60 0.59
53 31 0.30
54 1 0.01
55 6 0.06
ACGTcount: A:0.30, C:0.28, G:0.16, T:0.25
Consensus pattern (52 bp):
TCACATTATACCGATGCCATAGCCCAGCATGGTCTTATACGGAGTCACATTA
Found at i:63284593 original size:79 final size:77
Alignment explanation
Indices: 63284433--63284639 Score: 235
Period size: 79 Copynumber: 2.7 Consensus size: 77
63284423 AAAAATTCTT
* * *
63284433 TGTATTGTATTGTAATTTTACATTAAAATATGCTTATTTACAATTTACCAAAAATGAATAAATTG
1 TGTATTGTATCGTAATTTTACATTAAAATATACTTATTTACAATTTACAAAAAATGAATAAATTG
*
63284498 TATGTATTGTAT
66 TATGTATTGTAC
* * * *
63284510 TGTATTGTATCGTATTTTTGCATTAATAATTTACTTATTTACAATTTATAAAAAAGTGAATAAAT
1 TGTATTGTATCGTAATTTTACATTAA-AATATACTTATTTACAATTTACAAAAAA-TGAATAAAT
*
63284575 TGTTTGTATTGTAC
64 TGTATGTATTGTAC
* * *
63284589 TGTATTGTA---T--TTTTACATGAACAATATACTTATTTATATTTTATCAAAAAA
1 TGTATTGTATCGTAATTTTACATTAA-AATATACTTATTTACAATTTA-CAAAAAA
63284640 AGATTAATTC
Statistics
Matches: 111, Mismatches: 16, Indels: 8
0.82 0.12 0.06
Matches are distributed among these distances:
74 27 0.24
75 6 0.05
76 1 0.01
77 23 0.21
78 24 0.22
79 30 0.27
ACGTcount: A:0.37, C:0.07, G:0.10, T:0.47
Consensus pattern (77 bp):
TGTATTGTATCGTAATTTTACATTAAAATATACTTATTTACAATTTACAAAAAATGAATAAATTG
TATGTATTGTAC
Found at i:63284622 original size:74 final size:75
Alignment explanation
Indices: 63284432--63284639 Score: 242
Period size: 74 Copynumber: 2.7 Consensus size: 75
63284422 AAAAAATTCT
* * **
63284432 TTGTATTGTATTGTAATTTTACATTAAAATATGCTTATTTACAATTTACCAAAAATGAATAAATT
1 TTGTATTGTATTGTATTTTTACATTAAAATATACTTATTTACAATTTATAAAAAATGAATAAA-T
63284497 GTATGTATTGTA
65 -TATGTATTGTA
* * *
63284509 TTGTATTGTATCGTATTTTTGCATTAATAATTTACTTATTTACAATTTATAAAAAAGTGAATAAA
1 TTGTATTGTATTGTATTTTTACATTAA-AATATACTTATTTACAATTTATAAAAAA-TGAATAAA
63284574 -T-TGT-TTGTA
64 TTATGTATTGTA
* * * *
63284583 TTGTACTGTATTGTATTTTTACATGAACAATATACTTATTTATATTTTATCAAAAAA
1 TTGTATTGTATTGTATTTTTACATTAA-AATATACTTATTTACAATTTAT-AAAAAA
63284640 AGATTAATTC
Statistics
Matches: 113, Mismatches: 15, Indels: 8
0.83 0.11 0.06
Matches are distributed among these distances:
74 47 0.42
75 9 0.08
76 1 0.01
77 24 0.21
78 24 0.21
79 8 0.07
ACGTcount: A:0.37, C:0.07, G:0.10, T:0.47
Consensus pattern (75 bp):
TTGTATTGTATTGTATTTTTACATTAAAATATACTTATTTACAATTTATAAAAAATGAATAAATT
ATGTATTGTA
Found at i:63286249 original size:27 final size:27
Alignment explanation
Indices: 63286181--63286251 Score: 88
Period size: 27 Copynumber: 2.6 Consensus size: 27
63286171 CATCTTGTCA
*
63286181 ACCTTTGTGGCGTACTCTTAATGTATC
1 ACCTTTGTGGCGTACTCTTAATGGATC
* *
63286208 ACCTTTGTGCCGTACTCTTTATGGATC
1 ACCTTTGTGGCGTACTCTTAATGGATC
** *
63286235 GTCTTTGTGGTGTACTC
1 ACCTTTGTGGCGTACTC
63286252 AAATTAGATA
Statistics
Matches: 37, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 37 1.00
ACGTcount: A:0.14, C:0.23, G:0.21, T:0.42
Consensus pattern (27 bp):
ACCTTTGTGGCGTACTCTTAATGGATC
Found at i:63295418 original size:24 final size:24
Alignment explanation
Indices: 63295386--63295435 Score: 100
Period size: 24 Copynumber: 2.1 Consensus size: 24
63295376 CACAACAATT
63295386 TACTCACTAGGACAAGGATATATG
1 TACTCACTAGGACAAGGATATATG
63295410 TACTCACTAGGACAAGGATATATG
1 TACTCACTAGGACAAGGATATATG
63295434 TA
1 TA
63295436 ACCCATAACA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.38, C:0.16, G:0.20, T:0.26
Consensus pattern (24 bp):
TACTCACTAGGACAAGGATATATG
Found at i:63299505 original size:71 final size:71
Alignment explanation
Indices: 63299437--63299578 Score: 232
Period size: 71 Copynumber: 2.0 Consensus size: 71
63299427 TGTAAAGATG
*
63299437 AGAGGTTGAAGGATTAGGTAGCAATTTATCCATTTTTGAGTAAAAATCAAGAGATTTTTATTAGA
1 AGAGGTTGAAGGATTAGGTAGCAATTTAGCCATTTTTGAGTAAAAATCAAGAGATTTTTATTAGA
63299502 AAGAGT
66 AAGAGT
* * *
63299508 NGAGGTTGAAGGATTAGGTAGCAATTTAGCCATTTTTTAGTAAAAATCATGAGATTTTTATTA-A
1 AGAGGTTGAAGGATTAGGTAGCAATTTAGCCATTTTTGAGTAAAAATCAAGAGATTTTTATTAGA
63299572 GAAGAGT
66 -AAGAGT
63299579 GTAGAATAAG
Statistics
Matches: 66, Mismatches: 4, Indels: 2
0.92 0.06 0.03
Matches are distributed among these distances:
70 1 0.02
71 65 0.98
ACGTcount: A:0.37, C:0.06, G:0.23, T:0.35
Consensus pattern (71 bp):
AGAGGTTGAAGGATTAGGTAGCAATTTAGCCATTTTTGAGTAAAAATCAAGAGATTTTTATTAGA
AAGAGT
Found at i:63300345 original size:30 final size:29
Alignment explanation
Indices: 63300299--63300366 Score: 86
Period size: 30 Copynumber: 2.3 Consensus size: 29
63300289 AAACTCCGAA
*
63300299 CAAAACTCC-AAAATTACGGATTTACCGT
1 CAAAACTCCAAAAATTACGGATATACCGT
*
63300327 -AATAACTCCAATAAATTACGGATATACTGT
1 CAA-AACTCCAA-AAATTACGGATATACCGT
63300357 CAAAACTCCA
1 CAAAACTCCA
63300367 CATATCTTTT
Statistics
Matches: 34, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
27 2 0.06
28 6 0.18
29 1 0.03
30 23 0.68
31 2 0.06
ACGTcount: A:0.43, C:0.24, G:0.09, T:0.25
Consensus pattern (29 bp):
CAAAACTCCAAAAATTACGGATATACCGT
Found at i:63319235 original size:3 final size:3
Alignment explanation
Indices: 63319229--63319275 Score: 51
Period size: 3 Copynumber: 16.0 Consensus size: 3
63319219 TGTTGTCAGA
* * * *
63319229 GGT GGT GGT GAT AGT GGT GGT GGT -GT CGT GGA GGT GGT GGT GGT GGT
1 GGT GGT GGT GGT GGT GGT GGT GGT GGT GGT GGT GGT GGT GGT GGT GGT
63319276 TGGGGTCGCT
Statistics
Matches: 36, Mismatches: 7, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
2 2 0.06
3 34 0.94
ACGTcount: A:0.06, C:0.02, G:0.60, T:0.32
Consensus pattern (3 bp):
GGT
Found at i:63321445 original size:52 final size:52
Alignment explanation
Indices: 63321362--63321508 Score: 206
Period size: 52 Copynumber: 2.8 Consensus size: 52
63321352 TCTCTGACTT
* * * *
63321362 GGGTCACATGGCCAAGTCACACGCCCTTGTGCTAGGCCGTGTGTAGGTGT-A
1 GGGTCACACGGCCAAGCCACACGCCCGTGTGCTAGGCCATGTGTAGGTGTAA
*
63321413 GAGGTCACACGGCCAAGCCACACGCCCGTGTGCTAGGCTATGTGTAGGTGTAA
1 G-GGTCACACGGCCAAGCCACACGCCCGTGTGCTAGGCCATGTGTAGGTGTAA
* * *
63321466 GGGTCACACGGCCAAGCTACACGCCGGTGTGCCAGGCCATGTG
1 GGGTCACACGGCCAAGCCACACGCCCGTGTGCTAGGCCATGTG
63321509 AAAAATCCTG
Statistics
Matches: 85, Mismatches: 9, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
51 1 0.01
52 82 0.96
53 2 0.02
ACGTcount: A:0.20, C:0.28, G:0.33, T:0.19
Consensus pattern (52 bp):
GGGTCACACGGCCAAGCCACACGCCCGTGTGCTAGGCCATGTGTAGGTGTAA
Found at i:63322528 original size:25 final size:24
Alignment explanation
Indices: 63322498--63322581 Score: 64
Period size: 25 Copynumber: 3.4 Consensus size: 24
63322488 CTATATAACA
*
63322498 GGAAGCTCATTTGAGCCATGTAATG
1 GGAAGCTCATATGAGCCAT-TAATG
* * *
63322523 GGAAGCTTATCT-AGGCTATATAATG
1 GGAAGCTCATATGA-GCCAT-TAATG
* *
63322548 GGAAGCTTATAAGAGCCA-TAATCG
1 GGAAGCTCATATGAGCCATTAAT-G
63322572 GGAAGCTCAT
1 GGAAGCTCAT
63322582 GTGATCCAAT
Statistics
Matches: 48, Mismatches: 8, Indels: 7
0.76 0.13 0.11
Matches are distributed among these distances:
23 4 0.08
24 11 0.23
25 32 0.67
26 1 0.02
ACGTcount: A:0.32, C:0.15, G:0.26, T:0.26
Consensus pattern (24 bp):
GGAAGCTCATATGAGCCATTAATG
Found at i:63322747 original size:26 final size:26
Alignment explanation
Indices: 63322668--63322754 Score: 115
Period size: 26 Copynumber: 3.4 Consensus size: 26
63322658 GAGCCATATT
63322668 GGGAAGCTC-CAAAGAGCCATTAATC
1 GGGAAGCTCACAAAGAGCCATTAATC
** *
63322693 AAGAAGCTCACAAAGAGCCTTTAATC
1 GGGAAGCTCACAAAGAGCCATTAATC
63322719 GGGAAGCTCACAAAGAGCCATATAA-C
1 GGGAAGCTCACAAAGAGCCAT-TAATC
*
63322745 GGGATGCTCA
1 GGGAAGCTCA
63322755 TAAAAGCTAC
Statistics
Matches: 53, Mismatches: 7, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
25 7 0.13
26 43 0.81
27 3 0.06
ACGTcount: A:0.38, C:0.23, G:0.23, T:0.16
Consensus pattern (26 bp):
GGGAAGCTCACAAAGAGCCATTAATC
Found at i:63325042 original size:24 final size:24
Alignment explanation
Indices: 63325015--63325060 Score: 67
Period size: 24 Copynumber: 1.9 Consensus size: 24
63325005 ATGTTCTCGA
63325015 ACATATAACTT-AACATCTTCACAG
1 ACATATAA-TTGAACATCTTCACAG
*
63325039 ACATATAATTGAACATGTTCAC
1 ACATATAATTGAACATCTTCAC
63325061 GAATAATGTT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
23 2 0.10
24 18 0.90
ACGTcount: A:0.41, C:0.22, G:0.07, T:0.30
Consensus pattern (24 bp):
ACATATAATTGAACATCTTCACAG
Found at i:63330369 original size:12 final size:13
Alignment explanation
Indices: 63330333--63330370 Score: 51
Period size: 14 Copynumber: 2.9 Consensus size: 13
63330323 AAATATTTGA
63330333 CTTGTTCTTAATT
1 CTTGTTCTTAATT
*
63330346 ATGTGTTCTTAATT
1 CT-TGTTCTTAATT
63330360 CTTG-TCTTAAT
1 CTTGTTCTTAAT
63330371 ATTCCAGGAT
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
12 7 0.32
13 3 0.14
14 12 0.55
ACGTcount: A:0.18, C:0.13, G:0.11, T:0.58
Consensus pattern (13 bp):
CTTGTTCTTAATT
Found at i:63333571 original size:17 final size:17
Alignment explanation
Indices: 63333549--63333584 Score: 72
Period size: 17 Copynumber: 2.1 Consensus size: 17
63333539 CAGTGAATTC
63333549 CACAGGTAAATTTTTAA
1 CACAGGTAAATTTTTAA
63333566 CACAGGTAAATTTTTAA
1 CACAGGTAAATTTTTAA
63333583 CA
1 CA
63333585 GACACTAAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.42, C:0.14, G:0.11, T:0.33
Consensus pattern (17 bp):
CACAGGTAAATTTTTAA
Found at i:63338595 original size:26 final size:26
Alignment explanation
Indices: 63338566--63338615 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
63338556 TATGTGATTG
*
63338566 TATTGTTGCTATGAATATGAAATTTC
1 TATTGTTGCTATGAATATAAAATTTC
63338592 TATTGTTGCTATGAATATAAAATT
1 TATTGTTGCTATGAATATAAAATT
63338616 AATATTATAT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.34, C:0.06, G:0.14, T:0.46
Consensus pattern (26 bp):
TATTGTTGCTATGAATATAAAATTTC
Found at i:63338621 original size:26 final size:26
Alignment explanation
Indices: 63338566--63338621 Score: 85
Period size: 26 Copynumber: 2.2 Consensus size: 26
63338556 TATGTGATTG
* **
63338566 TATTGTTGCTATGAATATGAAATTTC
1 TATTGTTGCTATGAATATAAAATTAA
63338592 TATTGTTGCTATGAATATAAAATTAA
1 TATTGTTGCTATGAATATAAAATTAA
63338618 TATT
1 TATT
63338622 ATATCTGATA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.36, C:0.05, G:0.12, T:0.46
Consensus pattern (26 bp):
TATTGTTGCTATGAATATAAAATTAA
Found at i:63338934 original size:26 final size:26
Alignment explanation
Indices: 63338887--63338946 Score: 68
Period size: 26 Copynumber: 2.3 Consensus size: 26
63338877 CCGATATATG
*
63338887 GCTCTTCGTGAGCTTTTCGATTAAAA
1 GCTCTTCGTGAGCTTCTCGATTAAAA
* **
63338913 GCTCTTTGTGAGCTTC-CTGATTAATG
1 GCTCTTCGTGAGCTTCTC-GATTAAAA
63338939 GCTCTTCG
1 GCTCTTCG
63338947 GAGTTACCCA
Statistics
Matches: 28, Mismatches: 5, Indels: 2
0.80 0.14 0.06
Matches are distributed among these distances:
25 1 0.04
26 27 0.96
ACGTcount: A:0.17, C:0.22, G:0.22, T:0.40
Consensus pattern (26 bp):
GCTCTTCGTGAGCTTCTCGATTAAAA
Found at i:63339062 original size:25 final size:25
Alignment explanation
Indices: 63338983--63339065 Score: 67
Period size: 25 Copynumber: 3.3 Consensus size: 25
63338973 GCTTCTCGAT
**
63338983 TATGGCTCTTATGAGCTTCCTGTTA
1 TATGGCTCAAATGAGCTTCCTGTTA
** * * * *
63339008 TACAGCCCAAATAAGCTTCCCGCTA
1 TATGGCTCAAATGAGCTTCCTGTTA
* * *
63339033 CATGGCTTACATGAGCTTCCTGTTA
1 TATGGCTCAAATGAGCTTCCTGTTA
63339058 TATGGCTC
1 TATGGCTC
63339066 GAGAGAGGGC
Statistics
Matches: 39, Mismatches: 19, Indels: 0
0.67 0.33 0.00
Matches are distributed among these distances:
25 39 1.00
ACGTcount: A:0.22, C:0.27, G:0.18, T:0.34
Consensus pattern (25 bp):
TATGGCTCAAATGAGCTTCCTGTTA
Found at i:63340261 original size:41 final size:41
Alignment explanation
Indices: 63340201--63340283 Score: 157
Period size: 41 Copynumber: 2.0 Consensus size: 41
63340191 CCTATTTCGA
*
63340201 ATGCCTTCGAATTCCTACACGACCTGGGACAAAGGCACGTC
1 ATGCCTTCGAATTCATACACGACCTGGGACAAAGGCACGTC
63340242 ATGCCTTCGAATTCATACACGACCTGGGACAAAGGCACGTC
1 ATGCCTTCGAATTCATACACGACCTGGGACAAAGGCACGTC
63340283 A
1 A
63340284 CTTGGCTATG
Statistics
Matches: 41, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
41 41 1.00
ACGTcount: A:0.29, C:0.30, G:0.22, T:0.19
Consensus pattern (41 bp):
ATGCCTTCGAATTCATACACGACCTGGGACAAAGGCACGTC
Found at i:63344488 original size:26 final size:26
Alignment explanation
Indices: 63344459--63344511 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
63344449 ATTCTCATTG
*
63344459 TATAATTCTCCTTTTGTAAACTTTGT
1 TATAATTCTCCTTTTATAAACTTTGT
*
63344485 TATAATTTTCCTTTTATAAACTTTGT
1 TATAATTCTCCTTTTATAAACTTTGT
63344511 T
1 T
63344512 CTAAATGAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.13, G:0.06, T:0.57
Consensus pattern (26 bp):
TATAATTCTCCTTTTATAAACTTTGT
Found at i:63346517 original size:9 final size:9
Alignment explanation
Indices: 63346503--63346561 Score: 82
Period size: 9 Copynumber: 6.6 Consensus size: 9
63346493 ATAAGTATTA
*
63346503 AATTAATCG
1 AATTAACCG
63346512 AATTAACCG
1 AATTAACCG
63346521 AATTAACCG
1 AATTAACCG
*
63346530 AATTAGCCG
1 AATTAACCG
* *
63346539 AATCAGCCG
1 AATTAACCG
63346548 AATTAACCG
1 AATTAACCG
63346557 AATTA
1 AATTA
63346562 TTTGTATAAA
Statistics
Matches: 45, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
9 45 1.00
ACGTcount: A:0.42, C:0.20, G:0.14, T:0.24
Consensus pattern (9 bp):
AATTAACCG
Found at i:63346592 original size:6 final size:6
Alignment explanation
Indices: 63346581--63346633 Score: 52
Period size: 6 Copynumber: 8.5 Consensus size: 6
63346571 AATTATATGT
* * * *
63346581 TTTTTA TTTTTA GTTTTA GTTTTA GTTTTA GTTTTAGA TTTTTA TTTTTA
1 TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA -TTTT-TA TTTTTA TTTTTA
63346631 TTT
1 TTT
63346634 ATTAAATTAT
Statistics
Matches: 41, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
6 33 0.80
7 7 0.17
8 1 0.02
ACGTcount: A:0.17, C:0.00, G:0.09, T:0.74
Consensus pattern (6 bp):
TTTTTA
Found at i:63346603 original size:12 final size:12
Alignment explanation
Indices: 63346582--63346622 Score: 64
Period size: 12 Copynumber: 3.3 Consensus size: 12
63346572 ATTATATGTT
*
63346582 TTTTATTTTTAG
1 TTTTAGTTTTAG
63346594 TTTTAGTTTTAG
1 TTTTAGTTTTAG
63346606 TTTTAGTTTTAG
1 TTTTAGTTTTAG
63346618 ATTTT
1 -TTTT
63346623 TATTTTTATT
Statistics
Matches: 27, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
12 23 0.85
13 4 0.15
ACGTcount: A:0.17, C:0.00, G:0.12, T:0.71
Consensus pattern (12 bp):
TTTTAGTTTTAG
Found at i:63346609 original size:18 final size:19
Alignment explanation
Indices: 63346582--63346622 Score: 66
Period size: 18 Copynumber: 2.2 Consensus size: 19
63346572 ATTATATGTT
*
63346582 TTTTATTTTTAGTTTTAG-
1 TTTTAGTTTTAGTTTTAGA
63346600 TTTTAGTTTTAGTTTTAGA
1 TTTTAGTTTTAGTTTTAGA
63346619 TTTT
1 TTTT
63346623 TATTTTTATT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
18 17 0.81
19 4 0.19
ACGTcount: A:0.17, C:0.00, G:0.12, T:0.71
Consensus pattern (19 bp):
TTTTAGTTTTAGTTTTAGA
Found at i:63346634 original size:18 final size:18
Alignment explanation
Indices: 63346581--63346634 Score: 58
Period size: 18 Copynumber: 2.9 Consensus size: 18
63346571 AATTATATGT
63346581 TTTTTATTTTTAGTTTTAG
1 TTTTTATTTTTAG-TTTAG
*
63346600 -TTTTAGTTTTAGTTTTAG
1 TTTTTATTTTTAG-TTTAG
63346618 ATTTTTATTTTTA-TTTA
1 -TTTTTATTTTTAGTTTA
63346635 TTAAATTATT
Statistics
Matches: 31, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
18 21 0.68
20 10 0.32
ACGTcount: A:0.19, C:0.00, G:0.09, T:0.72
Consensus pattern (18 bp):
TTTTTATTTTTAGTTTAG
Found at i:63346674 original size:13 final size:13
Alignment explanation
Indices: 63346658--63346682 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
63346648 AATTTTTATG
63346658 ATTGGGTTGGGTA
1 ATTGGGTTGGGTA
63346671 ATTGGGTTGGGT
1 ATTGGGTTGGGT
63346683 TGGGTACTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.12, C:0.00, G:0.48, T:0.40
Consensus pattern (13 bp):
ATTGGGTTGGGTA
Found at i:63346682 original size:18 final size:18
Alignment explanation
Indices: 63346659--63346696 Score: 67
Period size: 18 Copynumber: 2.1 Consensus size: 18
63346649 ATTTTTATGA
63346659 TTGGGTTGGGTAATTGGG
1 TTGGGTTGGGTAATTGGG
*
63346677 TTGGGTTGGGTACTTGGG
1 TTGGGTTGGGTAATTGGG
63346695 TT
1 TT
63346697 AATATATATT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.08, C:0.03, G:0.47, T:0.42
Consensus pattern (18 bp):
TTGGGTTGGGTAATTGGG
Found at i:63352077 original size:42 final size:42
Alignment explanation
Indices: 63352018--63352103 Score: 163
Period size: 42 Copynumber: 2.0 Consensus size: 42
63352008 CTAGTTGCAT
*
63352018 GTTGAACTCAGCCATGATGGATCACAGTTATTTAAGGAAAGA
1 GTTGAACTCAGCCATGATGGATCACAGTTATTTAACGAAAGA
63352060 GTTGAACTCAGCCATGATGGATCACAGTTATTTAACGAAAGA
1 GTTGAACTCAGCCATGATGGATCACAGTTATTTAACGAAAGA
63352102 GT
1 GT
63352104 GCTGTCGTAC
Statistics
Matches: 43, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
42 43 1.00
ACGTcount: A:0.35, C:0.15, G:0.23, T:0.27
Consensus pattern (42 bp):
GTTGAACTCAGCCATGATGGATCACAGTTATTTAACGAAAGA
Found at i:63358035 original size:3 final size:3
Alignment explanation
Indices: 63358027--63358074 Score: 53
Period size: 3 Copynumber: 16.3 Consensus size: 3
63358017 AGCAACCTCA
** * *
63358027 ACC ACC ACC ACC AAG A-C ACC ACC ACC ACC ACC TCC ACC TCC ACC ACC
1 ACC ACC ACC ACC ACC ACC ACC ACC ACC ACC ACC ACC ACC ACC ACC ACC
63358074 A
1 A
63358075 ACAACAACCA
Statistics
Matches: 37, Mismatches: 7, Indels: 2
0.80 0.15 0.04
Matches are distributed among these distances:
2 1 0.03
3 36 0.97
ACGTcount: A:0.33, C:0.60, G:0.02, T:0.04
Consensus pattern (3 bp):
ACC
Found at i:63358099 original size:3 final size:3
Alignment explanation
Indices: 63358093--63358120 Score: 56
Period size: 3 Copynumber: 9.3 Consensus size: 3
63358083 CATGACGACG
63358093 ACA ACA ACA ACA ACA ACA ACA ACA ACA A
1 ACA ACA ACA ACA ACA ACA ACA ACA ACA A
63358121 AAACGACAGC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.68, C:0.32, G:0.00, T:0.00
Consensus pattern (3 bp):
ACA
Found at i:63364733 original size:13 final size:13
Alignment explanation
Indices: 63364715--63364740 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
63364705 CGAAATCATA
63364715 ATTATAATAATTT
1 ATTATAATAATTT
63364728 ATTATAATAATTT
1 ATTATAATAATTT
63364741 CAGTAAACTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (13 bp):
ATTATAATAATTT
Found at i:63373357 original size:9 final size:9
Alignment explanation
Indices: 63373330--63373366 Score: 56
Period size: 9 Copynumber: 4.1 Consensus size: 9
63373320 TGAGTTTTCG
63373330 AATTCGAAT
1 AATTCGAAT
* *
63373339 AACTCAAAT
1 AATTCGAAT
63373348 AATTCGAAT
1 AATTCGAAT
63373357 AATTCGAAT
1 AATTCGAAT
63373366 A
1 A
63373367 TCAAACTATA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
9 24 1.00
ACGTcount: A:0.49, C:0.14, G:0.08, T:0.30
Consensus pattern (9 bp):
AATTCGAAT
Found at i:63377794 original size:44 final size:45
Alignment explanation
Indices: 63377706--63377794 Score: 135
Period size: 44 Copynumber: 2.0 Consensus size: 45
63377696 AGAACAGAAA
*
63377706 TGAGCCATGTAAGTCCATATTAGAAATATGGCTTTGGAGACAGGAT
1 TGAGCCATGTAAGTCCATATTA-AAATATGGCATTGGAGACAGGAT
* *
63377752 TGAGCCGTGTAAGTCCATATT-ATATATGGCATTGGAGACAGGA
1 TGAGCCATGTAAGTCCATATTAAAATATGGCATTGGAGACAGGA
63377795 ATAAGTCCAT
Statistics
Matches: 40, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
44 20 0.50
46 20 0.50
ACGTcount: A:0.31, C:0.13, G:0.27, T:0.28
Consensus pattern (45 bp):
TGAGCCATGTAAGTCCATATTAAAATATGGCATTGGAGACAGGAT
Found at i:63394039 original size:131 final size:131
Alignment explanation
Indices: 63393768--63394246 Score: 448
Period size: 131 Copynumber: 3.6 Consensus size: 131
63393758 TGAAATTCCA
* * * * * * * *
63393768 AAGGGATCTTCGATTATTTTGAATAAATGAGAAAGCGCAACCCAGCACGATAGGGCTCGATT-CT
1 AAGGGATATTCGATTATTTTGAACAAACGAGAAATCACAACCCAGCACGTTAGGGCACGATTCCG
* * * **
63393832 CAAATTGCCAAACATCGAACATCGCCTTCGTTTTGAAA-GATTTTTAATAAACATGAATGAAAAC
66 CGAATTGCCAAACATCGAACATTGCCTTCGTTTT-AAATGATTTTTAA-AGACATGAATGAAATT
* *
63393896 CTA
129 TTG
* * * * * *
63393899 AAGGAATATTTGATTGTTTTGAACAAAAGAGAGATCACAACCCAGCACGATT-GGGCATGATTCC
1 AAGGGATATTCGATTATTTTGAACAAACGAGAAATCACAACCCAGCACG-TTAGGGCACGATTCC
* * ** * *
63393963 -CGAATTGTCAAACACCGAGTATTACCTTCGTTTTAAATGATTTTTAGAAGACATGAATGGAATT
65 GCGAATTGCCAAACATCGAACATTGCCTTCGTTTTAAATGATTTTTA-AAGACATGAATGAAATT
63394027 TTG
129 TTG
* **
63394030 AAGGGATATTCGATCATTTT-AAGCAAACGAGAAATTGCAACCCAGCACGTTAGGGCACGATTCC
1 AAGGGATATTCGATTATTTTGAA-CAAACGAGAAATCACAACCCAGCACGTTAGGGCACGATTCC
* ** * * * * * *
63394094 TGCGAATTTCCAAATGTCAAACCTTGCCTTCGTTTTAAAT-AGTTCTTAAAAGGCGTGAGTGAAA
65 -GCGAATTGCCAAACATCGAACATTGCCTTCGTTTTAAATGA-TT-TTTAAAGACATGAATGAAA
63394158 TTTTG
127 TTTTG
* * * *
63394163 AAGGGATATTCGATTATTTTGAGCAAACGTGAAATTACAACCCAACACGTTAGGGCACGATTCCG
1 AAGGGATATTCGATTATTTTGAACAAACGAGAAATCACAACCCAGCACGTTAGGGCACGATTCCG
*
63394228 CGAATTGCCAAATATCGAA
66 CGAATTGCCAAACATCGAA
63394247 TCTCGTCTTC
Statistics
Matches: 280, Mismatches: 57, Indels: 21
0.78 0.16 0.06
Matches are distributed among these distances:
130 7 0.03
131 145 0.52
132 21 0.08
133 103 0.37
134 4 0.01
ACGTcount: A:0.34, C:0.18, G:0.19, T:0.28
Consensus pattern (131 bp):
AAGGGATATTCGATTATTTTGAACAAACGAGAAATCACAACCCAGCACGTTAGGGCACGATTCCG
CGAATTGCCAAACATCGAACATTGCCTTCGTTTTAAATGATTTTTAAAGACATGAATGAAATTTT
G
Found at i:63394163 original size:133 final size:132
Alignment explanation
Indices: 63393987--63394240 Score: 375
Period size: 133 Copynumber: 1.9 Consensus size: 132
63393977 CCGAGTATTA
* * *
63393987 CCTTCGTTTTAAATGATTTTTAGAAGACATGAATGGAATTTTGAAGGGATATTCGATCATTTTAA
1 CCTTCGTTTTAAATGATTCTTAAAAGACATGAATGAAATTTTGAAGGGATATTCGATCATTTTAA
* * *
63394052 GCAAACGAGAAATTGCAACCCAGCACGTTAGGGCACGATTCCTGCGAATTTCCAAATGTCAAACC
66 GCAAACGAGAAATTACAACCCAACACGTTAGGGCACGATTCC-GCGAATTGCCAAATGTCAAACC
63394117 TTG
130 TTG
* * * * *
63394120 CCTTCGTTTTAAAT-AGTTCTTAAAAGGCGTGAGTGAAATTTTGAAGGGATATTCGATTATTTTG
1 CCTTCGTTTTAAATGA-TTCTTAAAAGACATGAATGAAATTTTGAAGGGATATTCGATCATTTTA
*
63394184 AGCAAACGTGAAATTACAACCCAACACGTTAGGGCACGATTCCGCGAATTGCCAAAT
65 AGCAAACGAGAAATTACAACCCAACACGTTAGGGCACGATTCCGCGAATTGCCAAAT
63394241 ATCGAATCTC
Statistics
Matches: 108, Mismatches: 12, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
132 14 0.13
133 94 0.87
ACGTcount: A:0.32, C:0.18, G:0.20, T:0.30
Consensus pattern (132 bp):
CCTTCGTTTTAAATGATTCTTAAAAGACATGAATGAAATTTTGAAGGGATATTCGATCATTTTAA
GCAAACGAGAAATTACAACCCAACACGTTAGGGCACGATTCCGCGAATTGCCAAATGTCAAACCT
TG
Found at i:63399468 original size:22 final size:22
Alignment explanation
Indices: 63399443--63399490 Score: 71
Period size: 22 Copynumber: 2.2 Consensus size: 22
63399433 ACTATTGTAA
63399443 GGTTTATGGATTATGGGTTTA-G
1 GGTTTATGGATTAT-GGTTTATG
*
63399465 GGTTTATGGTTTATGGTTTATG
1 GGTTTATGGATTATGGTTTATG
63399487 GGTT
1 GGTT
63399491 AAGGGTTAGG
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
21 6 0.25
22 18 0.75
ACGTcount: A:0.15, C:0.00, G:0.35, T:0.50
Consensus pattern (22 bp):
GGTTTATGGATTATGGTTTATG
Found at i:63399475 original size:29 final size:28
Alignment explanation
Indices: 63399443--63399505 Score: 90
Period size: 29 Copynumber: 2.2 Consensus size: 28
63399433 ACTATTGTAA
* *
63399443 GGTTTATGGATTATGGGTTTAGGGTTTAT
1 GGTTTATGGATTATGGGTTAAGGG-TTAG
*
63399472 GGTTTATGGTTTATGGGTTAAGGGTTAG
1 GGTTTATGGATTATGGGTTAAGGGTTAG
63399500 GGTTTA
1 GGTTTA
63399506 AGTTTCAGGG
Statistics
Matches: 31, Mismatches: 3, Indels: 1
0.89 0.09 0.03
Matches are distributed among these distances:
28 9 0.29
29 22 0.71
ACGTcount: A:0.17, C:0.00, G:0.37, T:0.46
Consensus pattern (28 bp):
GGTTTATGGATTATGGGTTAAGGGTTAG
Found at i:63399600 original size:22 final size:21
Alignment explanation
Indices: 63399567--63399607 Score: 64
Period size: 22 Copynumber: 1.9 Consensus size: 21
63399557 GTTTTATAGT
63399567 TTAAGGTTTAGGGGTTAGAGG
1 TTAAGGTTTAGGGGTTAGAGG
*
63399588 TTAAGGATTTAGGGTTTAGA
1 TTAAGG-TTTAGGGGTTAGA
63399608 TTAATTAGTG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 6 0.33
22 12 0.67
ACGTcount: A:0.27, C:0.00, G:0.37, T:0.37
Consensus pattern (21 bp):
TTAAGGTTTAGGGGTTAGAGG
Found at i:63399606 original size:7 final size:7
Alignment explanation
Indices: 63399443--63399606 Score: 73
Period size: 7 Copynumber: 23.0 Consensus size: 7
63399433 ACTATTGTAA
*
63399443 GGTTTAT
1 GGTTTAG
*
63399450 GGATTATG
1 GGTTTA-G
63399458 GGTTTAG
1 GGTTTAG
*
63399465 GGTTTAT
1 GGTTTAG
*
63399472 GGTTTAT
1 GGTTTAG
63399479 GGTTTATG
1 GGTTTA-G
*
63399487 GGTTAAG
1 GGTTTAG
63399494 GG-TTAG
1 GGTTTAG
63399500 GGTTTA-
1 GGTTTAG
*
63399506 AGTTTCAGG
1 GGTTT-A-G
*
63399515 GGGTT-G
1 GGTTTAG
*
63399521 GGTTTAA
1 GGTTTAG
*
63399528 TGTTTAG
1 GGTTTAG
*
63399535 GGATTAAG
1 GG-TTTAG
*
63399543 GGTTAAG
1 GGTTTAG
* *
63399550 AGTTTAT
1 GGTTTAG
* *
63399557 GTTTTAT
1 GGTTTAG
* *
63399564 AGTTTAA
1 GGTTTAG
63399571 GGTTTAG
1 GGTTTAG
*
63399578 GGGTTAG
1 GGTTTAG
*
63399585 AGGTTAAG
1 -GGTTTAG
*
63399593 GATTTAG
1 GGTTTAG
63399600 GGTTTAG
1 GGTTTAG
63399607 ATTAATTAGT
Statistics
Matches: 116, Mismatches: 32, Indels: 18
0.70 0.19 0.11
Matches are distributed among these distances:
6 14 0.12
7 78 0.67
8 21 0.18
9 3 0.03
ACGTcount: A:0.21, C:0.01, G:0.35, T:0.43
Consensus pattern (7 bp):
GGTTTAG
Found at i:63406166 original size:8 final size:8
Alignment explanation
Indices: 63406153--63406178 Score: 52
Period size: 8 Copynumber: 3.2 Consensus size: 8
63406143 ATTGTAACAC
63406153 TTTGTGTG
1 TTTGTGTG
63406161 TTTGTGTG
1 TTTGTGTG
63406169 TTTGTGTG
1 TTTGTGTG
63406177 TT
1 TT
63406179 ATTTTTTATG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 18 1.00
ACGTcount: A:0.00, C:0.00, G:0.35, T:0.65
Consensus pattern (8 bp):
TTTGTGTG
Found at i:63406484 original size:41 final size:41
Alignment explanation
Indices: 63406416--63406506 Score: 128
Period size: 41 Copynumber: 2.2 Consensus size: 41
63406406 TTTTTAAAAG
* *
63406416 GTCATGATTTTTAGTGGCATTTTTGGGAAAAGCGTCGCTAA
1 GTCATGATTTTTAATGGCATTTGTGGGAAAAGCGTCGCTAA
* *
63406457 GTCATGTTTTTTAATGGCGTTTGTGGGAAAAGCGTCGCTAAA
1 GTCATGATTTTTAATGGCATTTGTGGGAAAAGCGTCGCT-AA
63406499 GGTCATGA
1 -GTCATGA
63406507 CCTTTAGCGG
Statistics
Matches: 43, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
41 35 0.81
42 2 0.05
43 6 0.14
ACGTcount: A:0.24, C:0.12, G:0.29, T:0.35
Consensus pattern (41 bp):
GTCATGATTTTTAATGGCATTTGTGGGAAAAGCGTCGCTAA
Found at i:63406519 original size:43 final size:43
Alignment explanation
Indices: 63406412--63406557 Score: 163
Period size: 43 Copynumber: 3.4 Consensus size: 43
63406402 TAAATTTTTA
* * *
63406412 AAAGGTCATGATTTTTAGTGGCATTTTTGGGAAAAGCGTCGCT
1 AAAGGTCATGACTTTTAGCGGCGTTTTTGGGAAAAGCGTCGCT
** ** *
63406455 -AA-GTCATGTTTTTTAATGGCGTTTGTGGGAAAAGCGTCGCT
1 AAAGGTCATGACTTTTAGCGGCGTTTTTGGGAAAAGCGTCGCT
* *
63406496 AAAGGTCATGACCTTTAGCGGCGTTTTTGGTAAAAGCG-CTGCT
1 AAAGGTCATGACTTTTAGCGGCGTTTTTGGGAAAAGCGTC-GCT
*
63406539 AAAGATCATGACTTTTAGC
1 AAAGGTCATGACTTTTAGC
63406558 AATGTTTTTT
Statistics
Matches: 87, Mismatches: 13, Indels: 6
0.82 0.12 0.06
Matches are distributed among these distances:
41 35 0.40
42 5 0.06
43 47 0.54
ACGTcount: A:0.25, C:0.14, G:0.27, T:0.34
Consensus pattern (43 bp):
AAAGGTCATGACTTTTAGCGGCGTTTTTGGGAAAAGCGTCGCT
Found at i:63406622 original size:12 final size:14
Alignment explanation
Indices: 63406587--63406625 Score: 55
Period size: 15 Copynumber: 2.9 Consensus size: 14
63406577 CCACAAAATG
63406587 TTAGCGGCGTTGTCT
1 TTAGCGGCGTT-TCT
63406602 TTAGCGGCGTTT-T
1 TTAGCGGCGTTTCT
63406615 TT-GCGGCGTTT
1 TTAGCGGCGTTT
63406626 GTAAAAGCAC
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
12 9 0.38
13 3 0.12
14 1 0.04
15 11 0.46
ACGTcount: A:0.05, C:0.18, G:0.33, T:0.44
Consensus pattern (14 bp):
TTAGCGGCGTTTCT
Found at i:63409607 original size:14 final size:14
Alignment explanation
Indices: 63409588--63409615 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
63409578 CATGAGTAAA
63409588 GCTTACAATAGGGT
1 GCTTACAATAGGGT
63409602 GCTTACAATAGGGT
1 GCTTACAATAGGGT
63409616 CAAATAGAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.29, C:0.14, G:0.29, T:0.29
Consensus pattern (14 bp):
GCTTACAATAGGGT
Found at i:63412236 original size:9 final size:9
Alignment explanation
Indices: 63412222--63412289 Score: 84
Period size: 9 Copynumber: 7.6 Consensus size: 9
63412212 ATAAGTATAA
63412222 AATTAACCG
1 AATTAACCG
63412231 AATTAACCG
1 AATTAACCG
*
63412240 AATTAATCG
1 AATTAACCG
*
63412249 AATTACCCG
1 AATTAACCG
*
63412258 AATT-ACCTA
1 AATTAACC-G
*
63412267 AATTAATCG
1 AATTAACCG
63412276 AATTAACCG
1 AATTAACCG
63412285 AATTA
1 AATTA
63412290 TTTGTATAAA
Statistics
Matches: 49, Mismatches: 8, Indels: 4
0.80 0.13 0.07
Matches are distributed among these distances:
8 2 0.04
9 45 0.92
10 2 0.04
ACGTcount: A:0.44, C:0.19, G:0.09, T:0.28
Consensus pattern (9 bp):
AATTAACCG
Found at i:63412270 original size:27 final size:26
Alignment explanation
Indices: 63412222--63412289 Score: 100
Period size: 27 Copynumber: 2.5 Consensus size: 26
63412212 ATAAGTATAA
*
63412222 AATTAACCGAATTAACCGAATTAATCG
1 AATTAACCGAATT-ACCAAATTAATCG
*
63412249 AATTACCCGAATTACCTAAATTAATCG
1 AATTAACCGAATTACC-AAATTAATCG
63412276 AATTAACCGAATTA
1 AATTAACCGAATTA
63412290 TTTGTATAAA
Statistics
Matches: 37, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
26 3 0.08
27 34 0.92
ACGTcount: A:0.44, C:0.19, G:0.09, T:0.28
Consensus pattern (26 bp):
AATTAACCGAATTACCAAATTAATCG
Found at i:63412320 original size:6 final size:6
Alignment explanation
Indices: 63412309--63412355 Score: 58
Period size: 6 Copynumber: 7.5 Consensus size: 6
63412299 AATTATATGT
* *
63412309 TTTTTA TTTTTA GTTTTA TTTTTA GTTTTAGA TTTTTA TTTTTA TTT
1 TTTTTA TTTTTA TTTTTA TTTTTA -TTTT-TA TTTTTA TTTTTA TTT
63412356 ATTAAATTAT
Statistics
Matches: 35, Mismatches: 4, Indels: 4
0.81 0.09 0.09
Matches are distributed among these distances:
6 26 0.74
7 8 0.23
8 1 0.03
ACGTcount: A:0.17, C:0.00, G:0.06, T:0.77
Consensus pattern (6 bp):
TTTTTA
Found at i:63412327 original size:12 final size:12
Alignment explanation
Indices: 63412310--63412355 Score: 65
Period size: 12 Copynumber: 3.7 Consensus size: 12
63412300 ATTATATGTT
63412310 TTTTATTTTTAG
1 TTTTATTTTTAG
63412322 TTTTATTTTTAG
1 TTTTATTTTTAG
*
63412334 TTTTAGATTTTTAT
1 TTTT--ATTTTTAG
63412348 TTTTATTT
1 TTTTATTT
63412356 ATTAAATTAT
Statistics
Matches: 31, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
12 20 0.65
14 11 0.35
ACGTcount: A:0.17, C:0.00, G:0.07, T:0.76
Consensus pattern (12 bp):
TTTTATTTTTAG
Found at i:63414425 original size:27 final size:26
Alignment explanation
Indices: 63414395--63414445 Score: 66
Period size: 27 Copynumber: 1.9 Consensus size: 26
63414385 TAATTTTAAA
*
63414395 AAATTAAAAAAATCTTAAAATAAAAAT
1 AAATTAAAAAAATATT-AAATAAAAAT
**
63414422 AAATTATTAAAATATTAAATAAAA
1 AAATTAAAAAAATATTAAATAAAA
63414446 CACATTTTAG
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
26 8 0.38
27 13 0.62
ACGTcount: A:0.69, C:0.02, G:0.00, T:0.29
Consensus pattern (26 bp):
AAATTAAAAAAATATTAAATAAAAAT
Found at i:63425394 original size:45 final size:44
Alignment explanation
Indices: 63425323--63425413 Score: 164
Period size: 45 Copynumber: 2.0 Consensus size: 44
63425313 TTTTTCCAAA
63425323 ACTGACACTCTTTCATCATTTTCCTCTTCTTCAACACCACCCTG
1 ACTGACACTCTTTCATCATTTTCCTCTTCTTCAACACCACCCTG
*
63425367 ACNTGACCCTCTTTCATCATTTTCCTCTTCTTCAACACCACCCTG
1 AC-TGACACTCTTTCATCATTTTCCTCTTCTTCAACACCACCCTG
63425412 AC
1 AC
63425414 CCTCCATGCA
Statistics
Matches: 45, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
44 2 0.04
45 43 0.96
ACGTcount: A:0.20, C:0.40, G:0.04, T:0.35
Consensus pattern (44 bp):
ACTGACACTCTTTCATCATTTTCCTCTTCTTCAACACCACCCTG
Found at i:63438793 original size:21 final size:21
Alignment explanation
Indices: 63438767--63438812 Score: 83
Period size: 21 Copynumber: 2.2 Consensus size: 21
63438757 TCGATCCTGT
*
63438767 TCCTCATAAATAAAGTTTAAA
1 TCCTCATAAACAAAGTTTAAA
63438788 TCCTCATAAACAAAGTTTAAA
1 TCCTCATAAACAAAGTTTAAA
63438809 TCCT
1 TCCT
63438813 TATAGATGAA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.43, C:0.20, G:0.04, T:0.33
Consensus pattern (21 bp):
TCCTCATAAACAAAGTTTAAA
Found at i:63442379 original size:11 final size:11
Alignment explanation
Indices: 63442333--63442384 Score: 52
Period size: 11 Copynumber: 4.5 Consensus size: 11
63442323 AAGAAGACCT
63442333 AGAAAA-AAAA
1 AGAAAAGAAAA
63442343 AGAAAAGAAAA
1 AGAAAAGAAAA
*
63442354 TGAGAGAATGAAAA
1 --AGA-AAAGAAAA
*
63442368 ATAAAAGAAAA
1 AGAAAAGAAAA
63442379 AGAAAA
1 AGAAAA
63442385 ATGAGGTATA
Statistics
Matches: 34, Mismatches: 4, Indels: 7
0.76 0.09 0.16
Matches are distributed among these distances:
10 6 0.18
11 16 0.47
12 2 0.06
13 3 0.09
14 7 0.21
ACGTcount: A:0.77, C:0.00, G:0.17, T:0.06
Consensus pattern (11 bp):
AGAAAAGAAAA
Found at i:63442632 original size:20 final size:20
Alignment explanation
Indices: 63442609--63442670 Score: 65
Period size: 19 Copynumber: 3.2 Consensus size: 20
63442599 TTTTTTTTAC
*
63442609 AAAATTGCTGAATTTCTTAT
1 AAAATTGATGAATTTCTTAT
* *
63442629 AAAATTGTTGAA-TCCTTAT
1 AAAATTGATGAATTTCTTAT
* *
63442648 ATAATTAATGAATTTCTTA-
1 AAAATTGATGAATTTCTTAT
63442667 AAAA
1 AAAA
63442671 ACAAGGTGCT
Statistics
Matches: 34, Mismatches: 7, Indels: 3
0.77 0.16 0.07
Matches are distributed among these distances:
19 18 0.53
20 16 0.47
ACGTcount: A:0.42, C:0.08, G:0.08, T:0.42
Consensus pattern (20 bp):
AAAATTGATGAATTTCTTAT
Found at i:63451307 original size:22 final size:22
Alignment explanation
Indices: 63451261--63451307 Score: 67
Period size: 22 Copynumber: 2.1 Consensus size: 22
63451251 TTGGAGTTCG
**
63451261 CAGAGAATGTTAGTACTAGGGA
1 CAGAGAATGTTAGTACTAGAAA
*
63451283 CAGAGAATGTTAGTATTAGAAA
1 CAGAGAATGTTAGTACTAGAAA
63451305 CAG
1 CAG
63451308 CAAACCTAAG
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.40, C:0.09, G:0.28, T:0.23
Consensus pattern (22 bp):
CAGAGAATGTTAGTACTAGAAA
Found at i:63455135 original size:68 final size:68
Alignment explanation
Indices: 63455051--63455194 Score: 171
Period size: 68 Copynumber: 2.1 Consensus size: 68
63455041 TCAACGCAGG
* * *
63455051 TCAACAAGTTGTTAGGAATTACGATCTTAAATCAACTAACTTAAATAATCAGAAGTTGTAATCTT
1 TCAACGAGTTGTTAGGAATTACGATCTTAAATCAACGAACTCAAATAATCAGAAGTTGTAATCTT
63455116 AAA
66 AAA
* * * * ** ** * *
63455119 TCAGCGAGTTGTTAGGAGTTGCGTTCTTAAATCGGCGAACTCAAATAATTGGAGGTTGTGATCTT
1 TCAACGAGTTGTTAGGAATTACGATCTTAAATCAACGAACTCAAATAATCAGAAGTTGTAATCTT
63455184 AAA
66 AAA
63455187 TCAACGAG
1 TCAACGAG
63455195 CTTTAGTAAT
Statistics
Matches: 62, Mismatches: 14, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
68 62 1.00
ACGTcount: A:0.35, C:0.14, G:0.19, T:0.31
Consensus pattern (68 bp):
TCAACGAGTTGTTAGGAATTACGATCTTAAATCAACGAACTCAAATAATCAGAAGTTGTAATCTT
AAA
Found at i:63455618 original size:105 final size:105
Alignment explanation
Indices: 63455324--63456000 Score: 423
Period size: 105 Copynumber: 6.5 Consensus size: 105
63455314 TTGGGAATAT
** * * *
63455324 AAGTCTGCGAGCTATTTCGGAA-TTGCGAGCTTAACTCAACTAACTTAAATAGTTTGGAGGTTGT
1 AAGTCTGCGAGCTATTTC-GAAGTTGCGAGCTTAACTCAACTAACTCGAATAATCTGGAGGCTGT
* * *
63455388 GAGTTTTAACTCAACTAACCTTTAAACATTAGCTGGGAACGC
65 GAG-CTTAACTCAACTAACCTTTAAACATGAGCTGAGAACGC
** * * *
63455430 AAGTCCACGAGCTCTTTCAAAGTTTGCGAGCTTAACTCAACTAACTCGAATAATCTAGAGGCTGT
1 AAGTCTGCGAGCTATTTCGAAG-TTGCGAGCTTAACTCAACTAACTCGAATAATCTGGAGGCTGT
63455495 GAGCTTAACTCAACTAACCTTTAAACATGAGCTGAGAACGC
65 GAGCTTAACTCAACTAACCTTTAAACATGAGCTGAGAACGC
* * * * * *
63455536 AAGTCTGCGAACTGTTTCGAAGTTGCAAGCTTAACTTAGCTAACTCGAATAATCTGGAGACTGTG
1 AAGTCTGCGAGCTATTTCGAAGTTGCGAGCTTAACTCAACTAACTCGAATAATCTGGAGGCTGTG
* * * * * * **
63455601 AGCTTAACTTAGCTAACCCTTAAACATCAACTGGGAACAT
66 AGCTTAACTCAACTAACCTTTAAACATGAGCTGAGAACGC
* * * * ** * * * *
63455641 AGGT-TAGCAAGTTGTTAAGAA-ATGCGATCTTAGA-TCAACGAACTCAAATAAT-T--A-----
1 AAGTCT-GCGAGCTATTTCGAAGTTGCGAGCTTA-ACTCAACTAACTCGAATAATCTGGAGGCTG
* * * * * * * **
63455695 -GAG-ATAAATCAACTAGCCTTAGTAGA-ATCAACTGGGAACAT
64 TGAGCTTAACTCAACTAACCTT--TAAACATGAGCTGAGAACGC
* * * * * * * * **
63455736 AAGTTTGCGAGTTGTTTCAAAGTTGCCAGCTTAACTCAGCTAACTCGAATAATTTGAAGGCTACG
1 AAGTCTGCGAGCTATTTCGAAGTTGCGAGCTTAACTCAACTAACTCGAATAATCTGGAGGCTGTG
* * *
63455801 AGCTTAACTCAACTAACCTTTAAATATCAGCTG-GAAACGT
66 AGCTTAACTCAACTAACCTTTAAACATGAGCTGAG-AACGC
* * * * * * * * * * *
63455841 AAGTTTGCAAGTTGTTTTGGAGTTACAAGCTTAACTCAATTAACTCGAATAATTTGGAGGTTGTG
1 AAGTCTGCGAGCTATTTCGAAGTTGCGAGCTTAACTCAACTAACTCGAATAATCTGGAGGCTGTG
* * * * **
63455906 AACTTAACACAACTAACCTTTAAACATCAGCTAAGAACAT
66 AGCTTAACTCAACTAACCTTTAAACATGAGCTGAGAACGC
* * * ** * *
63455946 AAGTCTGCGAGCTGTTTCGAAATTACGAGCTTAACTTTACTAACTAGAATTATCT
1 AAGTCTGCGAGCTATTTCGAAGTTGCGAGCTTAACTCAACTAACTCGAATAATCT
63456001 AGAGATCGCG
Statistics
Matches: 451, Mismatches: 98, Indels: 45
0.76 0.16 0.08
Matches are distributed among these distances:
94 11 0.02
95 33 0.07
96 27 0.06
97 1 0.00
99 1 0.00
101 1 0.00
103 1 0.00
104 27 0.06
105 228 0.51
106 82 0.18
107 39 0.09
ACGTcount: A:0.34, C:0.19, G:0.18, T:0.29
Consensus pattern (105 bp):
AAGTCTGCGAGCTATTTCGAAGTTGCGAGCTTAACTCAACTAACTCGAATAATCTGGAGGCTGTG
AGCTTAACTCAACTAACCTTTAAACATGAGCTGAGAACGC
Found at i:63460347 original size:77 final size:77
Alignment explanation
Indices: 63460220--63460375 Score: 303
Period size: 77 Copynumber: 2.0 Consensus size: 77
63460210 TAGGGGATTT
63460220 TGGGCTGGTTTTAGCTAGGACGGGACTAGAACGAGTGAGATAAATAGAAATAGAAAAACGAAACC
1 TGGGCTGGTTTTAGCTAGGACGGGACTAGAACGAGTGAGATAAATAGAAATAGAAAAACGAAACC
63460285 GTCGTTTTTTAA
66 GTCGTTTTTTAA
*
63460297 TGGGCTGGTTTTAGCTAGTACGGGACTAGAACGAGTGAGATAAATAGAAATAGAAAAACGAAACC
1 TGGGCTGGTTTTAGCTAGGACGGGACTAGAACGAGTGAGATAAATAGAAATAGAAAAACGAAACC
63460362 GTCGTTTTTTAA
66 GTCGTTTTTTAA
63460374 TG
1 TG
63460376 TTTCTAGAGA
Statistics
Matches: 78, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
77 78 1.00
ACGTcount: A:0.36, C:0.12, G:0.27, T:0.26
Consensus pattern (77 bp):
TGGGCTGGTTTTAGCTAGGACGGGACTAGAACGAGTGAGATAAATAGAAATAGAAAAACGAAACC
GTCGTTTTTTAA
Found at i:63465483 original size:28 final size:28
Alignment explanation
Indices: 63465422--63465483 Score: 97
Period size: 28 Copynumber: 2.2 Consensus size: 28
63465412 TCAGTGTACG
*
63465422 AAATATTGAGAATGACACTTAGTATGCG
1 AAATATTGAGAATGACACTTAGTATGCA
* *
63465450 AGATATTGAGAATGACACTTAGTGTGCA
1 AAATATTGAGAATGACACTTAGTATGCA
63465478 AAATAT
1 AAATAT
63465484 CAAATGATTC
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
28 30 1.00
ACGTcount: A:0.40, C:0.10, G:0.21, T:0.29
Consensus pattern (28 bp):
AAATATTGAGAATGACACTTAGTATGCA
Found at i:63469786 original size:33 final size:33
Alignment explanation
Indices: 63469749--63469816 Score: 136
Period size: 33 Copynumber: 2.1 Consensus size: 33
63469739 GGTAGCATGG
63469749 TTCAAATATTAATATTTGTAAATTATTTATTTA
1 TTCAAATATTAATATTTGTAAATTATTTATTTA
63469782 TTCAAATATTAATATTTGTAAATTATTTATTTA
1 TTCAAATATTAATATTTGTAAATTATTTATTTA
63469815 TT
1 TT
63469817 TTTTTAAATA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 35 1.00
ACGTcount: A:0.38, C:0.03, G:0.03, T:0.56
Consensus pattern (33 bp):
TTCAAATATTAATATTTGTAAATTATTTATTTA
Found at i:63469804 original size:16 final size:16
Alignment explanation
Indices: 63469752--63469804 Score: 56
Period size: 16 Copynumber: 3.2 Consensus size: 16
63469742 AGCATGGTTC
63469752 AAATATTAATATTTGT
1 AAATATTAATATTTGT
*
63469768 AAATTATT--TATTTATT
1 AAA-TATTAATATTT-GT
63469784 CAAATATTAATATTTGT
1 -AAATATTAATATTTGT
63469801 AAAT
1 AAAT
63469805 TATTTATTTA
Statistics
Matches: 30, Mismatches: 2, Indels: 10
0.71 0.05 0.24
Matches are distributed among these distances:
15 5 0.17
16 12 0.40
17 8 0.27
18 5 0.17
ACGTcount: A:0.43, C:0.02, G:0.04, T:0.51
Consensus pattern (16 bp):
AAATATTAATATTTGT
Found at i:63471627 original size:13 final size:13
Alignment explanation
Indices: 63471609--63471638 Score: 60
Period size: 13 Copynumber: 2.3 Consensus size: 13
63471599 TGATCGACTA
63471609 TTATAATAAATTT
1 TTATAATAAATTT
63471622 TTATAATAAATTT
1 TTATAATAAATTT
63471635 TTAT
1 TTAT
63471639 TCTCATTTTA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (13 bp):
TTATAATAAATTT
Found at i:63472670 original size:10 final size:10
Alignment explanation
Indices: 63472655--63472679 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
63472645 TATTTTAGAG
63472655 AAAAATATGA
1 AAAAATATGA
63472665 AAAAATATGA
1 AAAAATATGA
63472675 AAAAA
1 AAAAA
63472680 AATTAATATT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.76, C:0.00, G:0.08, T:0.16
Consensus pattern (10 bp):
AAAAATATGA
Found at i:63474474 original size:24 final size:24
Alignment explanation
Indices: 63474442--63474488 Score: 94
Period size: 24 Copynumber: 2.0 Consensus size: 24
63474432 GGTTTCAGGA
63474442 TTTGGCTAAATTCAATATTGCTCT
1 TTTGGCTAAATTCAATATTGCTCT
63474466 TTTGGCTAAATTCAATATTGCTC
1 TTTGGCTAAATTCAATATTGCTC
63474489 GTCTAATCTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.26, C:0.17, G:0.13, T:0.45
Consensus pattern (24 bp):
TTTGGCTAAATTCAATATTGCTCT
Found at i:63476690 original size:11 final size:11
Alignment explanation
Indices: 63476674--63476699 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
63476664 GATCTGTGAA
63476674 AAAATAAAAAT
1 AAAATAAAAAT
63476685 AAAATAAAAAT
1 AAAATAAAAAT
63476696 AAAA
1 AAAA
63476700 AACAAACAGA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.85, C:0.00, G:0.00, T:0.15
Consensus pattern (11 bp):
AAAATAAAAAT
Found at i:63481494 original size:28 final size:28
Alignment explanation
Indices: 63481441--63481524 Score: 132
Period size: 28 Copynumber: 3.0 Consensus size: 28
63481431 CACTTTGTGC
63481441 TATTCTGGTGTGTTTTGGATGGATTATAT
1 TATTCTGGTGTGTTTTGGA-GGATTATAT
*
63481470 TATTCTGGTGTGTTTGGGAGGATTATAT
1 TATTCTGGTGTGTTTTGGAGGATTATAT
* *
63481498 GATACTGGTGTGTTTTGGAGGATTATA
1 TATTCTGGTGTGTTTTGGAGGATTATA
63481525 CTGGTGTGTT
Statistics
Matches: 51, Mismatches: 4, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
28 33 0.65
29 18 0.35
ACGTcount: A:0.19, C:0.04, G:0.31, T:0.46
Consensus pattern (28 bp):
TATTCTGGTGTGTTTTGGAGGATTATAT
Found at i:63481536 original size:23 final size:24
Alignment explanation
Indices: 63481445--63481538 Score: 91
Period size: 28 Copynumber: 3.6 Consensus size: 24
63481435 TTGTGCTATT
63481445 CTGGTGTGTTTTGGATGGATTATATTA
1 CTGGTGTGTTTTGGA-GGA-TATA-TA
*
63481472 TTCTGGTGTGTTTGGGAGGATTATATGATA
1 --CTGGTGTGTTTTGGAGG---ATAT-ATA
63481502 CTGGTGTGTTTTGGAGGAT-TATA
1 CTGGTGTGTTTTGGAGGATATATA
63481525 CTGGTGTGTTTTGG
1 CTGGTGTGTTTTGG
63481539 TTGGACATTT
Statistics
Matches: 59, Mismatches: 2, Indels: 14
0.79 0.03 0.19
Matches are distributed among these distances:
23 17 0.29
24 1 0.02
25 2 0.03
28 18 0.31
29 14 0.24
30 5 0.08
31 2 0.03
ACGTcount: A:0.16, C:0.04, G:0.34, T:0.46
Consensus pattern (24 bp):
CTGGTGTGTTTTGGAGGATATATA
Found at i:63481767 original size:23 final size:23
Alignment explanation
Indices: 63481741--63481814 Score: 86
Period size: 21 Copynumber: 3.4 Consensus size: 23
63481731 AGGTACTTTA
63481741 TGTGTCGTATTTCAGGCACCTTG
1 TGTGTCGTATTTCAGGCACCTTG
*
63481764 TGTGTCGTA--TCAGGCACCTCG
1 TGTGTCGTATTTCAGGCACCTTG
* *
63481785 TGTGTCG--TTTCAGGCA-TTTA
1 TGTGTCGTATTTCAGGCACCTTG
63481805 TGTGTCGTAT
1 TGTGTCGTAT
63481815 ACTGATCAGG
Statistics
Matches: 43, Mismatches: 4, Indels: 9
0.77 0.07 0.16
Matches are distributed among these distances:
20 8 0.19
21 25 0.58
22 1 0.02
23 9 0.21
ACGTcount: A:0.14, C:0.20, G:0.27, T:0.39
Consensus pattern (23 bp):
TGTGTCGTATTTCAGGCACCTTG
Found at i:63483054 original size:46 final size:48
Alignment explanation
Indices: 63482896--63483064 Score: 159
Period size: 46 Copynumber: 3.5 Consensus size: 48
63482886 TGGTTGGACC
*
63482896 ATGGCATCA-A-TGTGATATGTGATTTGTGTAAGACCATAGCTGGGCT
1 ATGGCATCAGAGTGTGATATGTGATTCGTGTAAGACCATAGCTGGGCT
* * * * *
63482942 ATGGCATCAGAGATATGTGATTACGTGCTTTCGTATAAGACCATATCTGGGAT
1 ATGGCATCAGAG---TGTGA-TATGTG-ATTCGTGTAAGACCATAGCTGGGCT
* *
63482995 ATGGCATC--AGTGTGATATGTGATTCGTGTAAGGCCATGGCTGGGCT
1 ATGGCATCAGAGTGTGATATGTGATTCGTGTAAGACCATAGCTGGGCT
* *
63483041 ATGGC-TACGGTGTGTGATATGTGA
1 ATGGCAT-CAGAGTGTGATATGTGA
63483065 CTATGTAAAA
Statistics
Matches: 99, Mismatches: 14, Indels: 18
0.76 0.11 0.14
Matches are distributed among these distances:
45 1 0.01
46 34 0.34
47 6 0.06
48 18 0.18
51 7 0.07
52 5 0.05
53 28 0.28
ACGTcount: A:0.24, C:0.14, G:0.30, T:0.32
Consensus pattern (48 bp):
ATGGCATCAGAGTGTGATATGTGATTCGTGTAAGACCATAGCTGGGCT
Found at i:63484299 original size:22 final size:22
Alignment explanation
Indices: 63484274--63484319 Score: 92
Period size: 22 Copynumber: 2.1 Consensus size: 22
63484264 TTTCATTGGA
63484274 AAAATGTAGATGTAATTGTGTT
1 AAAATGTAGATGTAATTGTGTT
63484296 AAAATGTAGATGTAATTGTGTT
1 AAAATGTAGATGTAATTGTGTT
63484318 AA
1 AA
63484320 CGCCTTTCAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.39, C:0.00, G:0.22, T:0.39
Consensus pattern (22 bp):
AAAATGTAGATGTAATTGTGTT
Found at i:63484745 original size:55 final size:55
Alignment explanation
Indices: 63484664--63484773 Score: 202
Period size: 55 Copynumber: 2.0 Consensus size: 55
63484654 ATAGACTATG
*
63484664 TCTATTTATAGGCTTGTAAAGTCATATTCTAGTAAGACTGAAACACCTTATTCTA
1 TCTATTTATAGGCTTGTAAAGCCATATTCTAGTAAGACTGAAACACCTTATTCTA
*
63484719 TCTATTTATAGGCTTGTAAAGCCATATTCTAGTAAGACTGAAACACTTTATTCTA
1 TCTATTTATAGGCTTGTAAAGCCATATTCTAGTAAGACTGAAACACCTTATTCTA
63484774 ATCAATATCA
Statistics
Matches: 53, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
55 53 1.00
ACGTcount: A:0.33, C:0.16, G:0.13, T:0.38
Consensus pattern (55 bp):
TCTATTTATAGGCTTGTAAAGCCATATTCTAGTAAGACTGAAACACCTTATTCTA
Found at i:63497772 original size:11 final size:11
Alignment explanation
Indices: 63497756--63497789 Score: 50
Period size: 11 Copynumber: 3.1 Consensus size: 11
63497746 ATAGAGATTA
*
63497756 GATACTATAGC
1 GATACTGTAGC
*
63497767 GATACTGTAGT
1 GATACTGTAGC
63497778 GATACTGTAGC
1 GATACTGTAGC
63497789 G
1 G
63497790 TGAGACAAAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.29, C:0.15, G:0.26, T:0.29
Consensus pattern (11 bp):
GATACTGTAGC
Found at i:63503334 original size:15 final size:15
Alignment explanation
Indices: 63503311--63503346 Score: 54
Period size: 15 Copynumber: 2.4 Consensus size: 15
63503301 ATCATCAAGG
*
63503311 TTTTATTATTATTAT
1 TTTTTTTATTATTAT
*
63503326 TTTTTTTATTTTTAT
1 TTTTTTTATTATTAT
63503341 TTTTTT
1 TTTTTT
63503347 GCATTGTTGG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.17, C:0.00, G:0.00, T:0.83
Consensus pattern (15 bp):
TTTTTTTATTATTAT
Found at i:63509321 original size:44 final size:44
Alignment explanation
Indices: 63509262--63509353 Score: 125
Period size: 44 Copynumber: 2.1 Consensus size: 44
63509252 CAGAAGTAAC
* *
63509262 AGTAATAGTATGACACATAAT-GTGCCTCATCGACTCGAA-GTCGA
1 AGTAACAGTACGACAC-TAATAGTGCCTCATCGACTC-AAGGTCGA
*
63509306 AGTAACAGTACGACACTTATAGTGCCTCATCGACTCAAGGTCGA
1 AGTAACAGTACGACACTAATAGTGCCTCATCGACTCAAGGTCGA
63509350 AGTA
1 AGTA
63509354 TCCCTGAACA
Statistics
Matches: 43, Mismatches: 3, Indels: 4
0.86 0.06 0.08
Matches are distributed among these distances:
43 5 0.12
44 38 0.88
ACGTcount: A:0.34, C:0.22, G:0.21, T:0.24
Consensus pattern (44 bp):
AGTAACAGTACGACACTAATAGTGCCTCATCGACTCAAGGTCGA
Found at i:63510273 original size:17 final size:17
Alignment explanation
Indices: 63510249--63510286 Score: 55
Period size: 14 Copynumber: 2.4 Consensus size: 17
63510239 ATTTATTTCT
63510249 TAATATAAT--ATTT-A
1 TAATATAATAAATTTAA
63510263 TAATATAATAAATTTAA
1 TAATATAATAAATTTAA
63510280 TAATATA
1 TAATATA
63510287 CTTTATAATC
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
14 9 0.43
16 4 0.19
17 8 0.38
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (17 bp):
TAATATAATAAATTTAA
Found at i:63512470 original size:55 final size:55
Alignment explanation
Indices: 63512352--63512470 Score: 150
Period size: 55 Copynumber: 2.2 Consensus size: 55
63512342 CTTAAATTTT
* * *
63512352 TAAATCAGTATTGTCCACGATTAGGCCACACGGGCGTGTGCCATAGCCGTGTCTA
1 TAAATCAGTATTGCCCACGAGTAGGCCACACGGGCGTGTGCCATAGCCGTGCCTA
* * * * *
63512407 TAAGTCAGTATTGCCCATGGGTAGGCCACACGGGCGTGTGCCATGGCTGTGCCCTA
1 TAAATCAGTATTGCCCACGAGTAGGCCACACGGGCGTGTGCCATAGCCGTG-CCTA
63512463 -AAATCAGT
1 TAAATCAGT
63512471 GTCGCACATC
Statistics
Matches: 54, Mismatches: 9, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
55 51 0.94
56 3 0.06
ACGTcount: A:0.23, C:0.25, G:0.28, T:0.24
Consensus pattern (55 bp):
TAAATCAGTATTGCCCACGAGTAGGCCACACGGGCGTGTGCCATAGCCGTGCCTA
Found at i:63517246 original size:44 final size:44
Alignment explanation
Indices: 63517173--63517264 Score: 127
Period size: 44 Copynumber: 2.1 Consensus size: 44
63517163 CTGAAGTAAT
*
63517173 AGTAACAGTACGACACACAAGGTGTCTCATCGACTCGAA-GTCGA
1 AGTAACAGTACGACACACAAGGTGACTCATCGACTC-AAGGTCGA
63517217 AGTAACAGTACGACACTTAC-A-GTGACTCATCGACTCAAGGTCGA
1 AGTAACAGTACGACAC--ACAAGGTGACTCATCGACTCAAGGTCGA
63517261 AGTA
1 AGTA
63517265 TCCCTGAACA
Statistics
Matches: 44, Mismatches: 1, Indels: 6
0.86 0.02 0.12
Matches are distributed among these distances:
43 2 0.05
44 39 0.89
45 1 0.02
46 2 0.05
ACGTcount: A:0.35, C:0.24, G:0.22, T:0.20
Consensus pattern (44 bp):
AGTAACAGTACGACACACAAGGTGACTCATCGACTCAAGGTCGA
Found at i:63517901 original size:19 final size:20
Alignment explanation
Indices: 63517866--63517909 Score: 63
Period size: 19 Copynumber: 2.2 Consensus size: 20
63517856 ATTTGGCACC
* *
63517866 ATTTAATTTATTTAATTTAT
1 ATTTAATTTAATTAATTAAT
63517886 ATTTAA-TTAATTAATTAAT
1 ATTTAATTTAATTAATTAAT
63517905 ATTTA
1 ATTTA
63517910 TAAATATCTT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 16 0.73
20 6 0.27
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (20 bp):
ATTTAATTTAATTAATTAAT
Found at i:63519326 original size:43 final size:43
Alignment explanation
Indices: 63519236--63519349 Score: 117
Period size: 43 Copynumber: 2.7 Consensus size: 43
63519226 TGATTACATG
* * * *
63519236 TAAGACCATGTTTGGGACATTGGAATTGTATTGAGATTATGTG
1 TAAGACCATGTCTGGGACATTGGCATCGTATTGAGATTATGTA
63519279 TAAGACCATGTCTGGGACATTGGCATCGTTAATT-A-ATT-TCGTA
1 TAAGACCATGTCTGGGACATTGGCATCG-T-ATTGAGATTAT-GTA
* * *
63519322 TAAGACCCTGTCTGGGATAGTGGCATCG
1 TAAGACCATGTCTGGGACATTGGCATCG
63519350 ATATAAAATA
Statistics
Matches: 61, Mismatches: 7, Indels: 6
0.82 0.09 0.08
Matches are distributed among these distances:
42 1 0.02
43 55 0.90
44 2 0.03
45 3 0.05
ACGTcount: A:0.26, C:0.14, G:0.26, T:0.33
Consensus pattern (43 bp):
TAAGACCATGTCTGGGACATTGGCATCGTATTGAGATTATGTA
Found at i:63522333 original size:11 final size:11
Alignment explanation
Indices: 63522319--63522363 Score: 54
Period size: 11 Copynumber: 3.9 Consensus size: 11
63522309 AGATAAATAT
63522319 TATTTTATTAA
1 TATTTTATTAA
*
63522330 TATTTTAATAATA
1 TATTTT-ATTA-A
*
63522343 TATTTTATTAT
1 TATTTTATTAA
63522354 TATTTTATTA
1 TATTTTATTA
63522364 GAGGAGAGAG
Statistics
Matches: 29, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
11 16 0.55
12 6 0.21
13 7 0.24
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (11 bp):
TATTTTATTAA
Found at i:63522346 original size:24 final size:25
Alignment explanation
Indices: 63522314--63522360 Score: 78
Period size: 24 Copynumber: 1.9 Consensus size: 25
63522304 TAATTAGATA
63522314 AATATTATTTTATTAATATTTTAAT
1 AATATTATTTTATTAATATTTTAAT
*
63522339 AATA-TATTTTATTATTATTTTA
1 AATATTATTTTATTAATATTTTA
63522361 TTAGAGGAGA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
24 17 0.81
25 4 0.19
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (25 bp):
AATATTATTTTATTAATATTTTAAT
Found at i:63524315 original size:46 final size:46
Alignment explanation
Indices: 63524263--63524536 Score: 381
Period size: 46 Copynumber: 6.0 Consensus size: 46
63524253 AGTGTGCTCT
*
63524263 CTGATATGAAATGTGTAAGAACATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
*
63524309 CTGATATGAAATGTGTAAGACCATGGTCGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
63524355 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
*
63524401 ATGATATGAAATG-GATAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTG-TAAGACCATGGTTGAAAGATACCATGGCAAC
* * * ** *
63524447 GTGACATGAAAAGAATAAGATCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * * * * *
63524493 ATGACA-GAAAATGAGTAAGACCATAGTTGAAAGACACTATGGCA
1 CTGATATG-AAATGTGTAAGACCATGGTTGAAAGATACCATGGCA
63524537 TCATGTCAAA
Statistics
Matches: 209, Mismatches: 16, Indels: 6
0.90 0.07 0.03
Matches are distributed among these distances:
45 2 0.01
46 207 0.99
ACGTcount: A:0.41, C:0.14, G:0.24, T:0.22
Consensus pattern (46 bp):
CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
Found at i:63525543 original size:46 final size:46
Alignment explanation
Indices: 63525475--63525771 Score: 427
Period size: 46 Copynumber: 6.5 Consensus size: 46
63525465 TATTCATTTC
* *
63525475 TATCTTTCAACCATGGTATTATTCA-TTTCTTGTCATGTTGCTATGG
1 TATCTTTCAACCATGGTCTTATTCATTTTC-TGTCATGTTGCCATGG
* * *
63525521 TATCTTTCAACCGTGGTCTTATTCATTTTCTGTCATGTTTCTATGG
1 TATCTTTCAACCATGGTCTTATTCATTTTCTGTCATGTTGCCATGG
* * *
63525567 TATCTTTCAACCGTGGTCTTATTCATTTTCTGTCATGTTGTCATAG
1 TATCTTTCAACCATGGTCTTATTCATTTTCTGTCATGTTGCCATGG
63525613 TATCTTTCAACCATGGTCTTATTCATTTTCTGTCATGTTGCCATGG
1 TATCTTTCAACCATGGTCTTATTCATTTTCTGTCATGTTGCCATGG
* *
63525659 TATCTTTCAACCATGGTCTTATTAATTTTCTATCATGTTGCCATGG
1 TATCTTTCAACCATGGTCTTATTCATTTTCTGTCATGTTGCCATGG
* *
63525705 TATCTTTCAACCATGGTCTTATTCA-TTTCTCGTCATATTGCCATAG
1 TATCTTTCAACCATGGTCTTATTCATTTTCT-GTCATGTTGCCATGG
* * *
63525751 CATCTTTCAACTATGATCTTA
1 TATCTTTCAACCATGGTCTTA
63525772 CATATCTAAA
Statistics
Matches: 230, Mismatches: 19, Indels: 4
0.91 0.08 0.02
Matches are distributed among these distances:
45 5 0.02
46 221 0.96
47 4 0.02
ACGTcount: A:0.20, C:0.21, G:0.13, T:0.46
Consensus pattern (46 bp):
TATCTTTCAACCATGGTCTTATTCATTTTCTGTCATGTTGCCATGG
Found at i:63525649 original size:22 final size:22
Alignment explanation
Indices: 63525580--63525649 Score: 61
Period size: 22 Copynumber: 3.1 Consensus size: 22
63525570 CTTTCAACCG
63525580 TGGTCTTATTCATTTTCTGTCA
1 TGGTCTTATTCATTTTCTGTCA
* * ***
63525602 TGTTGTCATAGT-ATCTTTCAACCA
1 TG--GTCTTATTCAT-TTTCTGTCA
63525626 TGGTCTTATTCATTTTCTGTCA
1 TGGTCTTATTCATTTTCTGTCA
63525648 TG
1 TG
63525650 TTGCCATGGT
Statistics
Matches: 34, Mismatches: 10, Indels: 8
0.65 0.19 0.15
Matches are distributed among these distances:
22 16 0.47
23 4 0.12
24 14 0.41
ACGTcount: A:0.17, C:0.19, G:0.14, T:0.50
Consensus pattern (22 bp):
TGGTCTTATTCATTTTCTGTCA
Found at i:63525865 original size:45 final size:45
Alignment explanation
Indices: 63525743--63525866 Score: 151
Period size: 45 Copynumber: 2.8 Consensus size: 45
63525733 CTCGTCATAT
* * * * * **
63525743 TGCCATAGCATCTTTCAACTATGATCTTACAT-ATCTAAATCGTGA
1 TGCCATAACGTCTTTCAGCTATGGTCTTAC-TCGTCTAAATCGCAA
*
63525788 TGCCATAACGTCTTTCAGCTATGGTCTTACTCGTCTGAATCGCAA
1 TGCCATAACGTCTTTCAGCTATGGTCTTACTCGTCTAAATCGCAA
*
63525833 TGCCATATCGTCTTTCAGCTATGGTCTTACTCGT
1 TGCCATAACGTCTTTCAGCTATGGTCTTACTCGT
63525867 TTCTGGTATG
Statistics
Matches: 69, Mismatches: 9, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
44 1 0.01
45 68 0.99
ACGTcount: A:0.23, C:0.25, G:0.15, T:0.36
Consensus pattern (45 bp):
TGCCATAACGTCTTTCAGCTATGGTCTTACTCGTCTAAATCGCAA
Found at i:63525881 original size:45 final size:42
Alignment explanation
Indices: 63525785--63525884 Score: 128
Period size: 45 Copynumber: 2.2 Consensus size: 42
63525775 ATCTAAATCG
63525785 TGATGCCATAACGTCTTTCAGCTATGGTCTTACTCGTCTGAA
1 TGATGCCATAACGTCTTTCAGCTATGGTCTTACTCGTCTGAA
* *
63525827 TCGCAATGCCATATCGTCTTTCAGCTATGGTCTTACTCGTTTCTGGTA
1 T-G--ATGCCATAACGTCTTTCAGCTATGGTCTTACTCG--TCT-GAA
63525875 TGATGCCATA
1 TGATGCCATA
63525885 GTCCAACTAT
Statistics
Matches: 50, Mismatches: 2, Indels: 9
0.82 0.03 0.15
Matches are distributed among these distances:
42 1 0.02
43 1 0.02
45 41 0.82
47 4 0.08
48 3 0.06
ACGTcount: A:0.20, C:0.24, G:0.19, T:0.37
Consensus pattern (42 bp):
TGATGCCATAACGTCTTTCAGCTATGGTCTTACTCGTCTGAA
Found at i:63525936 original size:22 final size:22
Alignment explanation
Indices: 63525893--63525938 Score: 58
Period size: 22 Copynumber: 2.1 Consensus size: 22
63525883 TAGTCCAACT
*
63525893 ATGGTCTTACACATGTATTGCC
1 ATGGTCTTACACATGTAGTGCC
*
63525915 ATGGTCTTATAC-TCGTAGTGCC
1 ATGGTCTTACACAT-GTAGTGCC
63525937 AT
1 AT
63525939 ATCCCAGATA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
21 1 0.05
22 20 0.95
ACGTcount: A:0.22, C:0.22, G:0.20, T:0.37
Consensus pattern (22 bp):
ATGGTCTTACACATGTAGTGCC
Found at i:63530058 original size:30 final size:30
Alignment explanation
Indices: 63530023--63530080 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
63530013 TAGGCACTTT
* *
63530023 CACACGGGTAATCCACACGCCCGTGTGTGA
1 CACACGGGTAAGCCACACGCCCATGTGTGA
* *
63530053 CACACGGTTAGGCCACACGCCCATGTGT
1 CACACGGGTAAGCCACACGCCCATGTGT
63530081 AGTGACCGTG
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.22, C:0.34, G:0.26, T:0.17
Consensus pattern (30 bp):
CACACGGGTAAGCCACACGCCCATGTGTGA
Found at i:63535144 original size:27 final size:27
Alignment explanation
Indices: 63535087--63535144 Score: 71
Period size: 27 Copynumber: 2.1 Consensus size: 27
63535077 TTTCTCTTCT
** *
63535087 TTCCTACTTCTCCTTCTTCATTTTTCT
1 TTCCTACTTCTCCTTCTTCATTCCTCC
**
63535114 TTCCTACTTCTCCTTCTTTGTTCCTCC
1 TTCCTACTTCTCCTTCTTCATTCCTCC
63535141 TTCC
1 TTCC
63535145 CTTTTTCCTT
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.05, C:0.38, G:0.02, T:0.55
Consensus pattern (27 bp):
TTCCTACTTCTCCTTCTTCATTCCTCC
Found at i:63536863 original size:17 final size:17
Alignment explanation
Indices: 63536839--63536885 Score: 67
Period size: 17 Copynumber: 2.8 Consensus size: 17
63536829 TTATTTTTAC
*
63536839 TTTATTTTTCTTTTCCT
1 TTTATTTTTATTTTCCT
* *
63536856 TTTGTTTTTATTTTTCT
1 TTTATTTTTATTTTCCT
63536873 TTTATTTTTATTT
1 TTTATTTTTATTT
63536886 CTATTTCTAG
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
17 26 1.00
ACGTcount: A:0.09, C:0.09, G:0.02, T:0.81
Consensus pattern (17 bp):
TTTATTTTTATTTTCCT
Found at i:63536881 original size:23 final size:23
Alignment explanation
Indices: 63536839--63536891 Score: 70
Period size: 23 Copynumber: 2.3 Consensus size: 23
63536829 TTATTTTTAC
* *
63536839 TTTATTTTTCTTTTCCTTTTGTT
1 TTTATTTTTCTTTTACTTTTATT
*
63536862 TTTATTTTTCTTTTATTTTTATT
1 TTTATTTTTCTTTTACTTTTATT
*
63536885 TCTATTT
1 TTTATTT
63536892 CTAGTTTTCA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
23 26 1.00
ACGTcount: A:0.09, C:0.09, G:0.02, T:0.79
Consensus pattern (23 bp):
TTTATTTTTCTTTTACTTTTATT
Found at i:63536890 original size:12 final size:11
Alignment explanation
Indices: 63536828--63536891 Score: 58
Period size: 11 Copynumber: 5.6 Consensus size: 11
63536818 TTTGAGTCCA
*
63536828 TTTATTTTTAC
1 TTTATTTTTAT
*
63536839 TTTATTTTTCT
1 TTTATTTTTAT
*
63536850 TTTCCTTTTGT-T
1 TTT-ATTTT-TAT
*
63536862 TTTATTTTTCT
1 TTTATTTTTAT
63536873 TTTATTTTTAT
1 TTTATTTTTAT
63536884 TTCTATTT
1 TT-TATTT
63536892 CTAGTTTTCA
Statistics
Matches: 44, Mismatches: 5, Indels: 7
0.79 0.09 0.12
Matches are distributed among these distances:
10 1 0.02
11 29 0.66
12 13 0.30
13 1 0.02
ACGTcount: A:0.11, C:0.09, G:0.02, T:0.78
Consensus pattern (11 bp):
TTTATTTTTAT
Found at i:63541469 original size:39 final size:39
Alignment explanation
Indices: 63541415--63541492 Score: 147
Period size: 39 Copynumber: 2.0 Consensus size: 39
63541405 TGGAATTAAA
*
63541415 GATAATTATTTAGATAAAGGGAAATACCTATGATTTTAT
1 GATAATTATTTAGATAAAGGGAAATACCTATGATATTAT
63541454 GATAATTATTTAGATAAAGGGAAATACCTATGATATTAT
1 GATAATTATTTAGATAAAGGGAAATACCTATGATATTAT
63541493 TTTAGTTGAA
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
39 38 1.00
ACGTcount: A:0.42, C:0.05, G:0.15, T:0.37
Consensus pattern (39 bp):
GATAATTATTTAGATAAAGGGAAATACCTATGATATTAT
Found at i:63544478 original size:19 final size:18
Alignment explanation
Indices: 63544454--63544500 Score: 51
Period size: 19 Copynumber: 2.6 Consensus size: 18
63544444 TTTAACCGAG
63544454 TAATAAATTATAAAAAAA
1 TAATAAATTATAAAAAAA
**
63544472 TTAATAATATT-TAAACTAA
1 -TAATAA-ATTATAAAAAAA
63544491 TAATAAATTA
1 TAATAAATTA
63544501 AAATTTTACA
Statistics
Matches: 24, Mismatches: 2, Indels: 5
0.77 0.06 0.16
Matches are distributed among these distances:
17 3 0.12
18 6 0.25
19 12 0.50
20 3 0.12
ACGTcount: A:0.62, C:0.02, G:0.00, T:0.36
Consensus pattern (18 bp):
TAATAAATTATAAAAAAA
Found at i:63554671 original size:135 final size:135
Alignment explanation
Indices: 63554469--63554819 Score: 490
Period size: 135 Copynumber: 2.6 Consensus size: 135
63554459 ATATTATTAG
* * *
63554469 CCTTATCTTCACTGGGCAGGAGTGGAGCAGGAT-AA-ATACCAGATCTTATCTTCACTGGGCAGG
1 CCTTATCTTCACTGAGCAGGAGTGGAGCAGGCTAAACATACCAGATCTTATCTTCACTGAGCAGG
* * * *
63554532 AGTGAAGCAGATCGAATTTTGGAGAATCTTATCTCCACGTACCGGCGATGGAGCAGATTCCAATC
66 AGTGAAGCAGATCAAATTTTGGAGAATCTTATCTCCACGTACCGGCAATGGAACAGATTCCAACC
*
63554597 AGCAA
131 ACCAA
* *
63554602 CCTTATCTTCACTGAGCAGGAGTGGAGTAGGCTAAACATACCCGATCTTATCTTCACTGAGCAGG
1 CCTTATCTTCACTGAGCAGGAGTGGAGCAGGCTAAACATACCAGATCTTATCTTCACTGAGCAGG
* * * * * *
63554667 AGTGAAGCAGATCAAATTTTGGCGAGTCTTATCTCCATGTATCGGCAATGGAACAGATTTCAGCC
66 AGTGAAGCAGATCAAATTTTGGAGAATCTTATCTCCACGTACCGGCAATGGAACAGATTCCAACC
*
63554732 ACCAG
131 ACCAA
* * * * *
63554737 CCTTATCTTCATTGAGCAGGAGTGAAACAGGCTAAACATACCAGATCTCATCTTTACTGAGCAGG
1 CCTTATCTTCACTGAGCAGGAGTGGAGCAGGCTAAACATACCAGATCTTATCTTCACTGAGCAGG
63554802 AGTGAAGCAGATCAAATT
66 AGTGAAGCAGATCAAATT
63554820 ACAGTAGATC
Statistics
Matches: 192, Mismatches: 24, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
133 30 0.16
134 2 0.01
135 160 0.83
ACGTcount: A:0.30, C:0.22, G:0.23, T:0.25
Consensus pattern (135 bp):
CCTTATCTTCACTGAGCAGGAGTGGAGCAGGCTAAACATACCAGATCTTATCTTCACTGAGCAGG
AGTGAAGCAGATCAAATTTTGGAGAATCTTATCTCCACGTACCGGCAATGGAACAGATTCCAACC
ACCAA
Found at i:63554859 original size:135 final size:133
Alignment explanation
Indices: 63554467--63554860 Score: 445
Period size: 135 Copynumber: 2.9 Consensus size: 133
63554457 AGATATTATT
* * *
63554467 AGCCTTATCTTCACTGGGCAGGAGTGGAGCAGGAT-AA-ATACCAGATCTTATCTTCACTGGGCA
1 AGCCTTATCTTCACTGAGCAGGAGTGGAGCAGGCTAAACATACCAGATCTTATCTTCACTGAGCA
* * *
63554530 GGAGTGAAGCAGATCGAATTTTGGAGAATCTTATCTCCAC-GTACCGGCGATGGAGCAGATTCCA
66 GGAGTGAAGCAGATCAAATTTTGGAG-ATCTTATCTCCACTG-AACGGAG-TGGAGCAGATTCCA
* *
63554594 ATCAGC
128 ACCACC
* * *
63554600 AACCTTATCTTCACTGAGCAGGAGTGGAGTAGGCTAAACATACCCGATCTTATCTTCACTGAGCA
1 AGCCTTATCTTCACTGAGCAGGAGTGGAGCAGGCTAAACATACCAGATCTTATCTTCACTGAGCA
* * * * *
63554665 GGAGTGAAGCAGATCAAATTTTGGCGAGTCTTATCTCCA-TGTATCGGCAATGGAACAGATTTCA
66 GGAGTGAAGCAGATCAAATTTTGGAGA-TCTTATCTCCACTG-AACGG-AGTGGAGCAGATTCCA
*
63554729 GCCACC
128 ACCACC
* * * * *
63554735 AGCCTTATCTTCATTGAGCAGGAGTGAAACAGGCTAAACATACCAGATCTCATCTTTACTGAGCA
1 AGCCTTATCTTCACTGAGCAGGAGTGGAGCAGGCTAAACATACCAGATCTTATCTTCACTGAGCA
** * * *
63554800 GGAGTGAAGCAGATCAAATTACAGTAGATCTTATCTTCACTGAACAGGAGCGGAGCAGATT
66 GGAGTGAAGCAGATCAAATT-TTGGAGATCTTATCTCCACTGAAC-GGAGTGGAGCAGATT
63554861 AGATTTCAAC
Statistics
Matches: 220, Mismatches: 33, Indels: 14
0.82 0.12 0.05
Matches are distributed among these distances:
133 31 0.14
134 3 0.01
135 179 0.81
136 7 0.03
ACGTcount: A:0.30, C:0.22, G:0.24, T:0.25
Consensus pattern (133 bp):
AGCCTTATCTTCACTGAGCAGGAGTGGAGCAGGCTAAACATACCAGATCTTATCTTCACTGAGCA
GGAGTGAAGCAGATCAAATTTTGGAGATCTTATCTCCACTGAACGGAGTGGAGCAGATTCCAACC
ACC
Found at i:63554875 original size:46 final size:46
Alignment explanation
Indices: 63554778--63554893 Score: 108
Period size: 46 Copynumber: 2.5 Consensus size: 46
63554768 CTAAACATAC
* * * *
63554778 CAGATCTCATCTTTACTGAGCAGGAGTGAAGCAGATCAAATTACAG
1 CAGATCTCATCTTCACTGAACAGGAGCGAAGCAGATCAAATTACAA
* * * * * *
63554824 TAGATCTTATCTTCACTGAACAGGAGCGGAGCAGATTAGATTTCAA
1 CAGATCTCATCTTCACTGAACAGGAGCGAAGCAGATCAAATTACAA
* **
63554870 CAGATCCCA-CCCCACTGAACAGGA
1 CAGATCTCATCTTCACTGAACAGGA
63554894 ATGGAATGGA
Statistics
Matches: 55, Mismatches: 15, Indels: 1
0.77 0.21 0.01
Matches are distributed among these distances:
45 13 0.24
46 42 0.76
ACGTcount: A:0.34, C:0.23, G:0.21, T:0.22
Consensus pattern (46 bp):
CAGATCTCATCTTCACTGAACAGGAGCGAAGCAGATCAAATTACAA
Found at i:63556183 original size:22 final size:23
Alignment explanation
Indices: 63556144--63556191 Score: 62
Period size: 22 Copynumber: 2.1 Consensus size: 23
63556134 TTTTTGATAT
63556144 TATTATTATTAATCTATTATTAC
1 TATTATTATTAATCTATTATTAC
* * *
63556167 TATT-TTATTTATTTATTTTTAC
1 TATTATTATTAATCTATTATTAC
63556189 TAT
1 TAT
63556192 CATTTTAGCG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
22 18 0.82
23 4 0.18
ACGTcount: A:0.29, C:0.06, G:0.00, T:0.65
Consensus pattern (23 bp):
TATTATTATTAATCTATTATTAC
Found at i:63556254 original size:15 final size:14
Alignment explanation
Indices: 63556209--63556256 Score: 55
Period size: 13 Copynumber: 3.4 Consensus size: 14
63556199 GCGATTTTCC
63556209 TATTATTTATTATAT
1 TATTATTT-TTATAT
*
63556224 TATT-TTTTTGTA-
1 TATTATTTTTATAT
63556236 TATTATTTTTATACT
1 TATTATTTTTATA-T
63556251 TATTAT
1 TATTAT
63556257 ACCATTTTCA
Statistics
Matches: 28, Mismatches: 2, Indels: 6
0.78 0.06 0.17
Matches are distributed among these distances:
12 4 0.14
13 11 0.39
14 3 0.11
15 10 0.36
ACGTcount: A:0.27, C:0.02, G:0.02, T:0.69
Consensus pattern (14 bp):
TATTATTTTTATAT
Found at i:63556586 original size:14 final size:14
Alignment explanation
Indices: 63556548--63556585 Score: 60
Period size: 14 Copynumber: 2.8 Consensus size: 14
63556538 TTATTATACG
63556548 TATTATATTTTATT
1 TATTATATTTTATT
*
63556562 TATCATATTTTATT
1 TATTATATTTTATT
63556576 TATT-TATTTT
1 TATTATATTTT
63556586 TTACCGTTTA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
13 6 0.27
14 16 0.73
ACGTcount: A:0.26, C:0.03, G:0.00, T:0.71
Consensus pattern (14 bp):
TATTATATTTTATT
Found at i:63567249 original size:65 final size:65
Alignment explanation
Indices: 63567145--63567301 Score: 314
Period size: 65 Copynumber: 2.4 Consensus size: 65
63567135 ATGGCCATGG
63567145 GGAGGTGAAAACCTCACGAAGACATAGGTACAGATGTATCTCGAAAGCAGTCCACTAGCCCACGC
1 GGAGGTGAAAACCTCACGAAGACATAGGTACAGATGTATCTCGAAAGCAGTCCACTAGCCCACGC
63567210 GGAGGTGAAAACCTCACGAAGACATAGGTACAGATGTATCTCGAAAGCAGTCCACTAGCCCACGC
1 GGAGGTGAAAACCTCACGAAGACATAGGTACAGATGTATCTCGAAAGCAGTCCACTAGCCCACGC
63567275 GGAGGTGAAAACCTCACGAAGACATAG
1 GGAGGTGAAAACCTCACGAAGACATAG
63567302 CTTCTCACTC
Statistics
Matches: 92, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
65 92 1.00
ACGTcount: A:0.35, C:0.25, G:0.25, T:0.15
Consensus pattern (65 bp):
GGAGGTGAAAACCTCACGAAGACATAGGTACAGATGTATCTCGAAAGCAGTCCACTAGCCCACGC
Found at i:63568148 original size:274 final size:274
Alignment explanation
Indices: 63567659--63568206 Score: 1096
Period size: 274 Copynumber: 2.0 Consensus size: 274
63567649 AGTCTACGAA
63567659 AATTGAGAGAAGGGTTCGGGAGTCAGTTACGCACAAGGAAGGGTTAGCACCCTCATAATGCCCAA
1 AATTGAGAGAAGGGTTCGGGAGTCAGTTACGCACAAGGAAGGGTTAGCACCCTCATAATGCCCAA
63567724 ATTTGGACCAATTGGTTATTTAATGTCCTATCGTTGAAAACTTAAAGAAAATTTTGCCAAAATAT
66 ATTTGGACCAATTGGTTATTTAATGTCCTATCGTTGAAAACTTAAAGAAAATTTTGCCAAAATAT
63567789 GATTCCTTTAAGAATGTGTGATCAACTCGAATTGGATTTTAAGATTCACTCGTTTCAAAGAAATA
131 GATTCCTTTAAGAATGTGTGATCAACTCGAATTGGATTTTAAGATTCACTCGTTTCAAAGAAATA
63567854 AAGTACCACATCCAGCACGTTAGGACACGATATTTTAAGCCTCTTGTAATATCCTGATTTTGGGC
196 AAGTACCACATCCAGCACGTTAGGACACGATATTTTAAGCCTCTTGTAATATCCTGATTTTGGGC
63567919 CTAGTCGGAATAGT
261 CTAGTCGGAATAGT
63567933 AATTGAGAGAAGGGTTCGGGAGTCAGTTACGCACAAGGAAGGGTTAGCACCCTCATAATGCCCAA
1 AATTGAGAGAAGGGTTCGGGAGTCAGTTACGCACAAGGAAGGGTTAGCACCCTCATAATGCCCAA
63567998 ATTTGGACCAATTGGTTATTTAATGTCCTATCGTTGAAAACTTAAAGAAAATTTTGCCAAAATAT
66 ATTTGGACCAATTGGTTATTTAATGTCCTATCGTTGAAAACTTAAAGAAAATTTTGCCAAAATAT
63568063 GATTCCTTTAAGAATGTGTGATCAACTCGAATTGGATTTTAAGATTCACTCGTTTCAAAGAAATA
131 GATTCCTTTAAGAATGTGTGATCAACTCGAATTGGATTTTAAGATTCACTCGTTTCAAAGAAATA
63568128 AAGTACCACATCCAGCACGTTAGGACACGATATTTTAAGCCTCTTGTAATATCCTGATTTTGGGC
196 AAGTACCACATCCAGCACGTTAGGACACGATATTTTAAGCCTCTTGTAATATCCTGATTTTGGGC
63568193 CTAGTCGGAATAGT
261 CTAGTCGGAATAGT
63568207 GGTTTCGTGA
Statistics
Matches: 274, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
274 274 1.00
ACGTcount: A:0.32, C:0.17, G:0.20, T:0.30
Consensus pattern (274 bp):
AATTGAGAGAAGGGTTCGGGAGTCAGTTACGCACAAGGAAGGGTTAGCACCCTCATAATGCCCAA
ATTTGGACCAATTGGTTATTTAATGTCCTATCGTTGAAAACTTAAAGAAAATTTTGCCAAAATAT
GATTCCTTTAAGAATGTGTGATCAACTCGAATTGGATTTTAAGATTCACTCGTTTCAAAGAAATA
AAGTACCACATCCAGCACGTTAGGACACGATATTTTAAGCCTCTTGTAATATCCTGATTTTGGGC
CTAGTCGGAATAGT
Found at i:63569516 original size:46 final size:46
Alignment explanation
Indices: 63569463--63569638 Score: 192
Period size: 46 Copynumber: 3.8 Consensus size: 46
63569453 TATTTGGGCA
*
63569463 TCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCGAGCG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* *** * * * *
63569509 TCCGAACTCGTTGAGTTGAGTCTGAGTTCGAGAGATGTA-ACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATGGATGCGA-GCG
* * *
63569556 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* * *
63569602 CCCGAGCTCATTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
63569639 GCGGGTTACA
Statistics
Matches: 105, Mismatches: 22, Indels: 6
0.79 0.17 0.05
Matches are distributed among these distances:
46 70 0.67
47 35 0.33
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
Found at i:63569618 original size:93 final size:93
Alignment explanation
Indices: 63569459--63569630 Score: 272
Period size: 93 Copynumber: 1.8 Consensus size: 93
63569449 GGGATATTTG
* * *
63569459 GGCATCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCGAACGCCCGAACTCATTGAG
*
63569524 TTGAGTCTGAGTTCGAGAGATGTAACTA
66 TTGAGTCCGAGTTCGAGAGATGTAACTA
* * * *
63569552 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAACGCCCGAGCTCATTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCGAACGCCCGAACTCATTGAG
63569617 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
63569631 ACTTATGGGC
Statistics
Matches: 71, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.22, C:0.21, G:0.30, T:0.28
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCGAACGCCCGAACTCATTGAG
TTGAGTCCGAGTTCGAGAGATGTAACTA
Found at i:63572645 original size:45 final size:45
Alignment explanation
Indices: 63572581--63573366 Score: 208
Period size: 45 Copynumber: 17.7 Consensus size: 45
63572571 GGTGGCTAAA
* * *
63572581 ATCTGCTCTATAGCCGATACATAGAGATAAGACTCGCTATCTTCG
1 ATCTGCTCCATAGCCGATACATGGAGATAAGACTCGCCATCTTCG
* *
63572626 ATCTGCTCCATAGCCGATACTTGGAGATAAGATTCGCCATCTTCG
1 ATCTGCTCCATAGCCGATACATGGAGATAAGACTCGCCATCTTCG
* * *
63572671 ATCTACTACATAGCCGATACATGGAGATAAGA-TCTGCAAT-TTC-
1 ATCTGCTCCATAGCCGATACATGGAGATAAGACTC-GCCATCTTCG
* * * * * *
63572714 AGTCTGCTTCC-TTG-C--TACCTCAGGAAGATAAGACTTG-TACCTTCA
1 A-TCTGC-TCCATAGCCGATACAT--GG-AGATAAGACTCGCCATCTTCG
* * * * ***
63572759 ACCTGCTCTC-TTG-C--TACCTTAGAGAGATAAGGCT-G--ATGGCTAAA
1 ATCTGCTC-CATAGCCGATA-CAT-G-GAGATAAGACTCGCCAT--CTTCG
* * * * * *
63572803 ATCTGCTCTAGAGCCGATACATTGAGATATGATTCGCCATTTTCG
1 ATCTGCTCCATAGCCGATACATGGAGATAAGACTCGCCATCTTCG
* * *
63572848 ATCTGCTCCATAGCCGATACATGGAGATAAGATTCACCATCTTTG
1 ATCTGCTCCATAGCCGATACATGGAGATAAGACTCGCCATCTTCG
* * * *
63572893 ATCTACTCCATAGTCGATACATGGAGATAAGA-TCTACAAT-TTC-
1 ATCTGCTCCATAGCCGATACATGGAGATAAGACTC-GCCATCTTCG
* * * * * * * * *
63572936 AGTCTGCTTTC-TTGCTAC-CT-CAAGAAGATAAGACTTG-TACCTTCA
1 A-TCTGC-TCCATAGC--CGATACATGGAGATAAGACTCGCCATCTTCG
* * * * * ***
63572981 ACCTGCTCTC-TTG-CTACTTCAAAGAGAGA-AAG-CT-G--ATGGCTAAA
1 ATCTGCTC-CATAGCCGA-TAC-ATG-GAGATAAGACTCGCCAT--CTTCG
* * *
63573025 ATCTGCTCCATAGCCGATACATGGAGATATGATTCGCCATCTTCA
1 ATCTGCTCCATAGCCGATACATGGAGATAAGACTCGCCATCTTCG
* * *
63573070 ATCTGCTCCATAGCCGATACCTGGAGATAAGATTCGCCATTTTCG
1 ATCTGCTCCATAGCCGATACATGGAGATAAGACTCGCCATCTTCG
* *
63573115 ATCTACTCCATAGCCGATACATGGAGATAAGA-TCTGCAAT-TT-G
1 ATCTGCTCCATAGCCGATACATGGAGATAAGACTC-GCCATCTTCG
* * * * * *
63573158 AGTCTGCTTCC-TTG-C--TACCTCAGGAAGATAAGACTTG-TACCTTCA
1 A-TCTGC-TCCATAGCCGATACAT--GG-AGATAAGACTCGCCATCTTCG
* * * * * ***
63573203 ACCTGCTCTC-TTG-C--TACCTCAGAAAGATAAGGCT-G--ATGGCTAAA
1 ATCTGCTC-CATAGCCGATACAT--G-GAGATAAGACTCGCCAT--CTTCG
* *
63573247 ATCTGCTCCATAACCGATACATGGAGATAAGATTCGCCATCTTCG
1 ATCTGCTCCATAGCCGATACATGGAGATAAGACTCGCCATCTTCG
* * *
63573292 ATCTACTCTATAGCCGATACATGGAGATAAGA-TCTGCAAT-TT-G
1 ATCTGCTCCATAGCCGATACATGGAGATAAGACTC-GCCATCTTCG
*
63573335 ATCTACTCCATAGCCGATACATGGAGATAAGA
1 ATCTGCTCCATAGCCGATACATGGAGATAAGA
63573367 TCTGCAATTT
Statistics
Matches: 568, Mismatches: 108, Indels: 132
0.70 0.13 0.16
Matches are distributed among these distances:
41 9 0.02
42 7 0.01
43 60 0.11
44 184 0.32
45 290 0.51
46 6 0.01
47 12 0.02
ACGTcount: A:0.29, C:0.24, G:0.18, T:0.29
Consensus pattern (45 bp):
ATCTGCTCCATAGCCGATACATGGAGATAAGACTCGCCATCTTCG
Found at i:63572898 original size:222 final size:222
Alignment explanation
Indices: 63572511--63573544 Score: 1359
Period size: 222 Copynumber: 4.7 Consensus size: 222
63572501 TATAGCAACT
** * * * * * * * *
63572511 TCAGGAAGATAAGGTTTGTGA-CTTCAACCTTCTC-CACTGCAACTTCAAGGAGACAAGGCCGGT
1 TCAGGAAGATAAGACTTGT-ACCTTCAACCTGCTCTC-TTGCTACCTCAAAGAGATAAGGCTGAT
* * *
63572574 GGCTAAAATCTGCTCTATAGCCGATACATAGAGATAAGACTCGCTATCTTCGATCTGCTCCATAG
64 GGCTAAAATCTGCTCCATAGCCGATACATAGAGATAAGATTCGCCATCTTCGATCTGCTCCATAG
* * *
63572639 CCGATACTTGGAGATAAGATTCGCCATCTTCGATCTACTACATAGCCGATACATGGAGATAAGAT
129 CCGATACATGGAGATAAGATTCGCCATCTTTGATCTACTCCATAGCCGATACATGGAGATAAGAT
63572704 CTGCAATTTCAGTCTGCTTCCTTGCTACC
194 CTGCAATTTCAGTCTGCTTCCTTGCTACC
* *
63572733 TCAGGAAGATAAGACTTGTACCTTCAACCTGCTCTCTTGCTACCTTAGAGAGATAAGGCTGATGG
1 TCAGGAAGATAAGACTTGTACCTTCAACCTGCTCTCTTGCTACCTCAAAGAGATAAGGCTGATGG
* * * * *
63572798 CTAAAATCTGCTCTAGAGCCGATACATTGAGATATGATTCGCCATTTTCGATCTGCTCCATAGCC
66 CTAAAATCTGCTCCATAGCCGATACATAGAGATAAGATTCGCCATCTTCGATCTGCTCCATAGCC
* *
63572863 GATACATGGAGATAAGATTCACCATCTTTGATCTACTCCATAGTCGATACATGGAGATAAGATCT
131 GATACATGGAGATAAGATTCGCCATCTTTGATCTACTCCATAGCCGATACATGGAGATAAGATCT
* *
63572928 ACAATTTCAGTCTGCTTTCTTGCTACC
196 GCAATTTCAGTCTGCTTCCTTGCTACC
* * * *
63572955 TCAAGAAGATAAGACTTGTACCTTCAACCTGCTCTCTTGCTACTTCAAAGAGAGAAAGCTGATGG
1 TCAGGAAGATAAGACTTGTACCTTCAACCTGCTCTCTTGCTACCTCAAAGAGATAAGGCTGATGG
* * *
63573020 CTAAAATCTGCTCCATAGCCGATACATGGAGATATGATTCGCCATCTTCAATCTGCTCCATAGCC
66 CTAAAATCTGCTCCATAGCCGATACATAGAGATAAGATTCGCCATCTTCGATCTGCTCCATAGCC
*
63573085 GATACCTGGAGATAAGATTCGCCAT-TTTCGATCTACTCCATAGCCGATACATGGAGATAAGATC
131 GATACATGGAGATAAGATTCGCCATCTTT-GATCTACTCCATAGCCGATACATGGAGATAAGATC
*
63573149 TGCAATTTGAGTCTGCTTCCTTGCTACC
195 TGCAATTTCAGTCTGCTTCCTTGCTACC
63573177 TCAGGAAGATAAGACTTGTACCTTCAACCTGCTCTCTTGCTACCTCAGAA-AGATAAGGCTGATG
1 TCAGGAAGATAAGACTTGTACCTTCAACCTGCTCTCTTGCTACCTCA-AAGAGATAAGGCTGATG
* * * *
63573241 GCTAAAATCTGCTCCATAACCGATACATGGAGATAAGATTCGCCATCTTCGATCTACTCTATAGC
65 GCTAAAATCTGCTCCATAGCCGATACATAGAGATAAGATTCGCCATCTTCGATCTGCTCCATAGC
*
63573306 CGATACATGGAGATAAGA-TCTG-CA-ATTTGATCTACTCCATAGCCGATACATGGAGATAAGAT
130 CGATACATGGAGATAAGATTC-GCCATCTTTGATCTACTCCATAGCCGATACATGGAGATAAGAT
* * * * * **
63573368 CTGCAATTTTTAGCCT-ATTACCCTACT-GT
194 CTGCAA-TTTCAGTCTGCTT-CCTTGCTACC
* ** * * * * * *
63573397 TTAGGGGGTTAA-AGCTCGTATCTTCAACCTGCTCTCTTGCTACATCAAAGAGATAAGGCCGGTG
1 TCAGGAAGATAAGA-CTTGTACCTTCAACCTGCTCTCTTGCTACCTCAAAGAGATAAGGCTGATG
* * * * * *
63573461 GCTAAAATCTACTCCATAGTCAATACATAAAGATAAGACTCGCCATTTTCGATCTGCTCCATAGC
65 GCTAAAATCTGCTCCATAGCCGATACATAGAGATAAGATTCGCCATCTTCGATCTGCTCCATAGC
63573526 CGATACATGGAGATAAGAT
130 CGATACATGGAGATAAGAT
63573545 CTGCAATTTT
Statistics
Matches: 723, Mismatches: 78, Indels: 23
0.88 0.09 0.03
Matches are distributed among these distances:
219 3 0.00
220 165 0.23
221 23 0.03
222 529 0.73
223 3 0.00
ACGTcount: A:0.29, C:0.24, G:0.19, T:0.29
Consensus pattern (222 bp):
TCAGGAAGATAAGACTTGTACCTTCAACCTGCTCTCTTGCTACCTCAAAGAGATAAGGCTGATGG
CTAAAATCTGCTCCATAGCCGATACATAGAGATAAGATTCGCCATCTTCGATCTGCTCCATAGCC
GATACATGGAGATAAGATTCGCCATCTTTGATCTACTCCATAGCCGATACATGGAGATAAGATCT
GCAATTTCAGTCTGCTTCCTTGCTACC
Found at i:63573352 original size:43 final size:44
Alignment explanation
Indices: 63573247--63573376 Score: 192
Period size: 43 Copynumber: 3.0 Consensus size: 44
63573237 GATGGCTAAA
* * *
63573247 ATCTGCTCCATAACCGATACATGGAGATAAGAT-TCGCCATCTTCG
1 ATCTACTCCATAGCCGATACATGGAGATAAGATCT-GCAAT-TTCG
*
63573292 ATCTACTCTATAGCCGATACATGGAGATAAGATCTGCAATTT-G
1 ATCTACTCCATAGCCGATACATGGAGATAAGATCTGCAATTTCG
63573335 ATCTACTCCATAGCCGATACATGGAGATAAGATCTGCAATTT
1 ATCTACTCCATAGCCGATACATGGAGATAAGATCTGCAATTT
63573377 TTAGCCTATT
Statistics
Matches: 79, Mismatches: 5, Indels: 4
0.90 0.06 0.05
Matches are distributed among these distances:
43 42 0.53
44 2 0.03
45 34 0.43
46 1 0.01
ACGTcount: A:0.32, C:0.22, G:0.18, T:0.28
Consensus pattern (44 bp):
ATCTACTCCATAGCCGATACATGGAGATAAGATCTGCAATTTCG
Found at i:63573554 original size:45 final size:45
Alignment explanation
Indices: 63573467--63573554 Score: 106
Period size: 45 Copynumber: 2.0 Consensus size: 45
63573457 GGTGGCTAAA
* *
63573467 ATCTACTCCATAGTCAATACATAAAGATAAGACTCGCCATTTTCG
1 ATCTACTCCATAGCCAATACATAAAGATAAGACTCGCAATTTTCG
* * **
63573512 ATCTGCTCCATAGCCGATACATGGAGATAAGA-TCTGCAATTTT
1 ATCTACTCCATAGCCAATACATAAAGATAAGACTC-GCAATTTT
63573555 TAGCCTATTA
Statistics
Matches: 36, Mismatches: 6, Indels: 2
0.82 0.14 0.05
Matches are distributed among these distances:
44 2 0.06
45 34 0.94
ACGTcount: A:0.33, C:0.23, G:0.15, T:0.30
Consensus pattern (45 bp):
ATCTACTCCATAGCCAATACATAAAGATAAGACTCGCAATTTTCG
Found at i:63573984 original size:177 final size:177
Alignment explanation
Indices: 63573292--63573939 Score: 964
Period size: 177 Copynumber: 3.7 Consensus size: 177
63573282 GCCATCTTCG
* * ** * *
63573292 ATCTACTCTATAGCCGATACATGGAGATAAGA-TCTG-CAATTT-GATCTACTCCATAGCCGATA
1 ATCTACTCCATAGCCAATACATAAAGATAAGACTC-GCCATTTTCGATCTGCTCCATAGCCGATA
* *
63573354 CATGGAGATAAGATCTGCAATTTTTAGCCTATTACCCTACTGTTTAGGGGGTTAAAGCTCGTATC
65 CATGGAGATAAGATCTGCAATTTTCAGCCTATTACCCTACTGCTTAGGGGGTTAAAGCTCGTATC
63573419 TTCAACCTGCTCTCTTGCTACATCAAAGAGATAAGGCCGGTGGCTAAA
130 TTCAACCTGCTCTCTTGCTACATCAAAGAGATAAGGCCGGTGGCTAAA
*
63573467 ATCTACTCCATAGTCAATACATAAAGATAAGACTCGCCATTTTCGATCTGCTCCATAGCCGATAC
1 ATCTACTCCATAGCCAATACATAAAGATAAGACTCGCCATTTTCGATCTGCTCCATAGCCGATAC
*
63573532 ATGGAGATAAGATCTGCAATTTTTAGCCTATTACCCTACTGCTTAGGGGGTTAAAGCTCGTATCT
66 ATGGAGATAAGATCTGCAATTTTCAGCCTATTACCCTACTGCTTAGGGGGTTAAAGCTCGTATCT
63573597 TCAACCTGCTCTCTTGCTACATCAAAGAGATAAGGCCGGTGGCTAAA
131 TCAACCTGCTCTCTTGCTACATCAAAGAGATAAGGCCGGTGGCTAAA
* *
63573644 ATCTGCTCCATAGTCAATACATAAAGATAAGACTCGCCATTTTCGATCTGCTCCATAGCCGATAC
1 ATCTACTCCATAGCCAATACATAAAGATAAGACTCGCCATTTTCGATCTGCTCCATAGCCGATAC
*** * *
63573709 ATGGAGATAAGATCTTTTATTTTCTGCCTGTTACCCTACTGCTTAGGGGGTT-AAGACTCGTATC
66 ATGGAGATAAGATCTGCAATTTTCAGCCTATTACCCTACTGCTTAGGGGGTTAAAG-CTCGTATC
* * * *
63573773 TTCAACCTGCTCTCTTGCTACCTTAGAGAGATAAGGTCGGTGGCTAAA
130 TTCAACCTGCTCTCTTGCTACATCAAAGAGATAAGGCCGGTGGCTAAA
* * ** *
63573821 ATCTGCTCTATAGCCAATACATGGAGATAAGACTCACCATCTTT-GATCTGCTCCATAGCCGATA
1 ATCTACTCCATAGCCAATACATAAAGATAAGACTCGCCAT-TTTCGATCTGCTCCATAGCCGATA
* * * *
63573885 CATGGATATAAGATCTGTAATTTTCAGCCTGTCACCCTACTGCTTAGGGGGTTAA
65 CATGGAGATAAGATCTGCAATTTTCAGCCTATTACCCTACTGCTTAGGGGGTTAA
63573940 GACTTGTGGC
Statistics
Matches: 438, Mismatches: 29, Indels: 9
0.92 0.06 0.02
Matches are distributed among these distances:
175 28 0.06
176 10 0.02
177 396 0.90
178 4 0.01
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (177 bp):
ATCTACTCCATAGCCAATACATAAAGATAAGACTCGCCATTTTCGATCTGCTCCATAGCCGATAC
ATGGAGATAAGATCTGCAATTTTCAGCCTATTACCCTACTGCTTAGGGGGTTAAAGCTCGTATCT
TCAACCTGCTCTCTTGCTACATCAAAGAGATAAGGCCGGTGGCTAAA
Found at i:63578370 original size:42 final size:42
Alignment explanation
Indices: 63578324--63578405 Score: 119
Period size: 42 Copynumber: 2.0 Consensus size: 42
63578314 CTTCATATCC
* *
63578324 TGCTGCATCTTTGCCAGTTGCTCCTGCATCTGTGCTTGCAAT
1 TGCTGAATCTTGGCCAGTTGCTCCTGCATCTGTGCTTGCAAT
* * *
63578366 TGCTGAATCTTGGTCAGTTGCTCTTGCATCTGTTCTTGCA
1 TGCTGAATCTTGGCCAGTTGCTCCTGCATCTGTGCTTGCA
63578406 GCCGATCCTG
Statistics
Matches: 35, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
42 35 1.00
ACGTcount: A:0.12, C:0.26, G:0.22, T:0.40
Consensus pattern (42 bp):
TGCTGAATCTTGGCCAGTTGCTCCTGCATCTGTGCTTGCAAT
Found at i:63593533 original size:22 final size:23
Alignment explanation
Indices: 63593485--63593534 Score: 77
Period size: 23 Copynumber: 2.2 Consensus size: 23
63593475 TATTTAGATT
63593485 TAATTATAAATATTGTAAAAAAA
1 TAATTATAAATATTGTAAAAAAA
63593508 TAATTATAAATA-T-TAAAATAAA
1 TAATTATAAATATTGTAAAA-AAA
63593530 TAATT
1 TAATT
63593535 TTCTTATTTG
Statistics
Matches: 26, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
21 5 0.19
22 9 0.35
23 12 0.46
ACGTcount: A:0.60, C:0.00, G:0.02, T:0.38
Consensus pattern (23 bp):
TAATTATAAATATTGTAAAAAAA
Found at i:63595784 original size:3 final size:3
Alignment explanation
Indices: 63595776--63595807 Score: 64
Period size: 3 Copynumber: 10.7 Consensus size: 3
63595766 ACCTCCATTC
63595776 TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TC
1 TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TC
63595808 TTCTTCTTCT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.31, C:0.34, G:0.00, T:0.34
Consensus pattern (3 bp):
TCA
Done.