Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr9
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 91122320
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2661692 characters in sequence are not A, C, G, or T
File 195 of 279
Found at i:63958987 original size:43 final size:43
Alignment explanation
Indices: 63958939--63959083 Score: 156
Period size: 43 Copynumber: 3.4 Consensus size: 43
63958929 TATCCTAGAT
* *
63958939 ATGGTCTTACATGTTATCTA-ATATCGATGCCAATGTCCCAAAC
1 ATGGTCTTACACGTAATC-ACATATCGATGCCAATGTCCCAAAC
** *
63958982 ATGGTCTTACACAAAATCATATAAT-GATGCCAA--TCCCAAAC
1 ATGGTCTTACACGTAATCACAT-ATCGATGCCAATGTCCCAAAC
* *
63959023 ATGGTCTTACACGTAATCACAGTA-CAATGCCAATGTCCCAGAC
1 ATGGTCTTACACGTAATCACA-TATCGATGCCAATGTCCCAAAC
*
63959066 ATGGTCTTACATGTAATC
1 ATGGTCTTACACGTAATC
63959084 TTATCTCGGT
Statistics
Matches: 86, Mismatches: 10, Indels: 12
0.80 0.09 0.11
Matches are distributed among these distances:
41 34 0.40
42 2 0.02
43 48 0.56
44 2 0.02
ACGTcount: A:0.34, C:0.24, G:0.14, T:0.28
Consensus pattern (43 bp):
ATGGTCTTACACGTAATCACATATCGATGCCAATGTCCCAAAC
Found at i:63966209 original size:40 final size:40
Alignment explanation
Indices: 63965986--63966208 Score: 340
Period size: 40 Copynumber: 5.6 Consensus size: 40
63965976 CGGATGATAA
* * *
63965986 CCGGGCTAAGTCCCGAAGGCATTTGCGCTAGTGACTAGT-T
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-TAT
63966026 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* * *
63966066 CCGGGCTAAGTCCCAAAGGCATTTGTGCGAGTTATTACAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
63966106 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGCTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
63966146 CCGGGCTAAGTCCCGAAGGCATTGGTACGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
63966186 CCGGGCTATGTCCCGAAGGCATT
1 CCGGGCTAAGTCCCGAAGGCATT
63966209 GAGCGAATAG
Statistics
Matches: 168, Mismatches: 14, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
39 1 0.01
40 167 0.99
ACGTcount: A:0.22, C:0.24, G:0.28, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:63970568 original size:57 final size:57
Alignment explanation
Indices: 63970474--63970588 Score: 167
Period size: 57 Copynumber: 2.0 Consensus size: 57
63970464 CACTACGTGA
* * *
63970474 TAGCCGACTTTACTCCTTAGCCGAATCATCTAGTCTTTTTCTTTGTTATTCTTCTAT
1 TAGCCGACTTTACTCCTTAGCCGAATCATCTAGTCTTTTTCTTCGTTATCCTCCTAT
* * * *
63970531 TAGCCGACTTTACTCTTTAGCCGAATCCTTTATTCTTTTTCTTCGTTATCCTCCTAT
1 TAGCCGACTTTACTCCTTAGCCGAATCATCTAGTCTTTTTCTTCGTTATCCTCCTAT
63970588 T
1 T
63970589 TTCTTCTTAA
Statistics
Matches: 51, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
57 51 1.00
ACGTcount: A:0.17, C:0.26, G:0.10, T:0.48
Consensus pattern (57 bp):
TAGCCGACTTTACTCCTTAGCCGAATCATCTAGTCTTTTTCTTCGTTATCCTCCTAT
Found at i:63971525 original size:27 final size:26
Alignment explanation
Indices: 63971458--63971553 Score: 102
Period size: 27 Copynumber: 3.6 Consensus size: 26
63971448 TGGGGGAAGC
* *
63971458 GTTCTGGTGGCTATGCCACAAATATAT
1 GTTCTGGTGGCTCTGCCA-AAATATCT
63971485 GTTCTGGTGGCTCTGCCAAAATATCT
1 GTTCTGGTGGCTCTGCCAAAATATCT
* * * *
63971511 GTATCTGGTGACTCTGTCACATTATCT
1 GT-TCTGGTGGCTCTGCCAAAATATCT
**
63971538 GTTCTGGCAGCTCTGC
1 GTTCTGGTGGCTCTGC
63971554 TGCAAATTCT
Statistics
Matches: 58, Mismatches: 10, Indels: 3
0.82 0.14 0.04
Matches are distributed among these distances:
26 19 0.33
27 39 0.67
ACGTcount: A:0.19, C:0.23, G:0.23, T:0.35
Consensus pattern (26 bp):
GTTCTGGTGGCTCTGCCAAAATATCT
Found at i:63972857 original size:60 final size:60
Alignment explanation
Indices: 63972759--63972878 Score: 204
Period size: 60 Copynumber: 2.0 Consensus size: 60
63972749 TGATAGCATG
* **
63972759 AATGAGGAGTATAAACTTCTCAAACCACCATGACCATTCATTGGAGAGGTAAGTCGAGCT
1 AATGAGGAGTATAAACTCCTCAAACCACCATGACCATTCAACGGAGAGGTAAGTCGAGCT
*
63972819 AATGAGGAGTATAAACTCCTCAAACCACCATGATCATTCAACGGAGAGGTAAGTCGAGCT
1 AATGAGGAGTATAAACTCCTCAAACCACCATGACCATTCAACGGAGAGGTAAGTCGAGCT
63972879 TAGACTATAA
Statistics
Matches: 56, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
60 56 1.00
ACGTcount: A:0.36, C:0.21, G:0.22, T:0.22
Consensus pattern (60 bp):
AATGAGGAGTATAAACTCCTCAAACCACCATGACCATTCAACGGAGAGGTAAGTCGAGCT
Found at i:63973972 original size:18 final size:17
Alignment explanation
Indices: 63973949--63973982 Score: 59
Period size: 18 Copynumber: 1.9 Consensus size: 17
63973939 ATTTACCTGT
63973949 TATTATTATTCGTTTATC
1 TATTATTATT-GTTTATC
63973967 TATTATTATTGTTTAT
1 TATTATTATTGTTTAT
63973983 ATTACAGGCT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.24, C:0.06, G:0.06, T:0.65
Consensus pattern (17 bp):
TATTATTATTGTTTATC
Found at i:63973985 original size:15 final size:17
Alignment explanation
Indices: 63973949--63973986 Score: 53
Period size: 18 Copynumber: 2.3 Consensus size: 17
63973939 ATTTACCTGT
63973949 TATTATTATTCGTTTATC
1 TATTATTATTCGTTTA-C
63973967 TATTATTATT-GTTTA-
1 TATTATTATTCGTTTAC
63973982 TATTA
1 TATTA
63973987 CAGGCTTTTA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
15 5 0.25
17 5 0.25
18 10 0.50
ACGTcount: A:0.26, C:0.05, G:0.05, T:0.63
Consensus pattern (17 bp):
TATTATTATTCGTTTAC
Found at i:63975985 original size:9 final size:9
Alignment explanation
Indices: 63975973--63975998 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
63975963 TTTGTGAGAT
63975973 TTTTGAGCC
1 TTTTGAGCC
63975982 TTTTGAGCC
1 TTTTGAGCC
63975991 TTTTGAGC
1 TTTTGAGC
63975999 ATCATTGATT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.12, C:0.19, G:0.23, T:0.46
Consensus pattern (9 bp):
TTTTGAGCC
Found at i:63977953 original size:34 final size:34
Alignment explanation
Indices: 63977910--63977980 Score: 142
Period size: 34 Copynumber: 2.1 Consensus size: 34
63977900 GATTCGGAGC
63977910 TAGAATAACAAGTAAAGTCTAGTGGATTTTTCCT
1 TAGAATAACAAGTAAAGTCTAGTGGATTTTTCCT
63977944 TAGAATAACAAGTAAAGTCTAGTGGATTTTTCCT
1 TAGAATAACAAGTAAAGTCTAGTGGATTTTTCCT
63977978 TAG
1 TAG
63977981 GTATTGTCTC
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 37 1.00
ACGTcount: A:0.35, C:0.11, G:0.18, T:0.35
Consensus pattern (34 bp):
TAGAATAACAAGTAAAGTCTAGTGGATTTTTCCT
Found at i:63981918 original size:40 final size:40
Alignment explanation
Indices: 63981859--63982070 Score: 259
Period size: 40 Copynumber: 5.3 Consensus size: 40
63981849 CATTTGAATG
*
63981859 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATT
* *
63981899 TTATCCGGGTTAAGACCCGAAGGCATTTGTGCTAGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATT
* *
63981939 TTATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGA-T
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAG-TGATT
* * *
63981979 ATATCCGGGCTAAGACCCGAAGACATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAG-TGATT
* * * * * *
63982019 ATACCCAGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATT
63982059 ATATCC-GGCTAA
1 ATATCCGGGCTAA
63982071 ATTCCGAAGA
Statistics
Matches: 152, Mismatches: 17, Indels: 7
0.86 0.10 0.04
Matches are distributed among these distances:
39 7 0.05
40 142 0.93
41 3 0.02
ACGTcount: A:0.24, C:0.20, G:0.27, T:0.28
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATT
Found at i:63990330 original size:40 final size:40
Alignment explanation
Indices: 63990271--63990462 Score: 296
Period size: 40 Copynumber: 4.8 Consensus size: 40
63990261 CATTTGAATG
* *
63990271 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAG-TGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGA-T
* *
63990311 TTATCCGGGTTAAGACCCGAAGGCATTTGTGCGAGTTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGAT
63990351 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGAT
*
63990391 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGAT
* * *
63990431 ATACCCGGGTTAAGACCCGAAGGCAATTGTGC
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGC
63990463 TTGTGGTTAT
Statistics
Matches: 141, Mismatches: 10, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
40 138 0.98
41 3 0.02
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGAT
Found at i:64014068 original size:23 final size:23
Alignment explanation
Indices: 64014041--64014088 Score: 62
Period size: 23 Copynumber: 2.1 Consensus size: 23
64014031 ATTATCAAAG
* *
64014041 ATGC-ATTTTCATGCCATATATAA
1 ATGCAATTATCATG-CATACATAA
64014064 ATGCAATTATCATGCATACATAA
1 ATGCAATTATCATGCATACATAA
64014087 AT
1 AT
64014089 CATGCAATTA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
23 14 0.64
24 8 0.36
ACGTcount: A:0.40, C:0.17, G:0.08, T:0.35
Consensus pattern (23 bp):
ATGCAATTATCATGCATACATAA
Found at i:64016552 original size:20 final size:20
Alignment explanation
Indices: 64016527--64016573 Score: 94
Period size: 20 Copynumber: 2.4 Consensus size: 20
64016517 GTTCGCTTCT
64016527 CCCACGCCCCTGTATGTAGG
1 CCCACGCCCCTGTATGTAGG
64016547 CCCACGCCCCTGTATGTAGG
1 CCCACGCCCCTGTATGTAGG
64016567 CCCACGC
1 CCCACGC
64016574 TCGTGTTAAT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.15, C:0.45, G:0.23, T:0.17
Consensus pattern (20 bp):
CCCACGCCCCTGTATGTAGG
Found at i:64021891 original size:18 final size:18
Alignment explanation
Indices: 64021868--64021902 Score: 70
Period size: 18 Copynumber: 1.9 Consensus size: 18
64021858 GTTAAAATTT
64021868 CTTAACCAAATTTTAATA
1 CTTAACCAAATTTTAATA
64021886 CTTAACCAAATTTTAAT
1 CTTAACCAAATTTTAAT
64021903 CGACCTTTTA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.43, C:0.17, G:0.00, T:0.40
Consensus pattern (18 bp):
CTTAACCAAATTTTAATA
Found at i:64026593 original size:17 final size:17
Alignment explanation
Indices: 64026557--64026593 Score: 56
Period size: 17 Copynumber: 2.2 Consensus size: 17
64026547 TCTATAATTA
**
64026557 TTTATTTTATTTTTGGT
1 TTTATTTTATTTTTAAT
64026574 TTTATTTTATTTTTAAT
1 TTTATTTTATTTTTAAT
64026591 TTT
1 TTT
64026594 TGGTCTGGAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.16, C:0.00, G:0.05, T:0.78
Consensus pattern (17 bp):
TTTATTTTATTTTTAAT
Found at i:64048465 original size:2 final size:2
Alignment explanation
Indices: 64048458--64048497 Score: 71
Period size: 2 Copynumber: 20.0 Consensus size: 2
64048448 TTGTAAACAG
*
64048458 GT GT GT GT GT GT TT GT GT GT GT GT GT GT GT GT GT GT GT GT
1 GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT
64048498 AAAATTGCCA
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.00, C:0.00, G:0.47, T:0.53
Consensus pattern (2 bp):
GT
Found at i:64050143 original size:44 final size:44
Alignment explanation
Indices: 64050094--64050178 Score: 143
Period size: 44 Copynumber: 1.9 Consensus size: 44
64050084 CATGCATCGC
*
64050094 ATCCATAATGAACTCAGACCAACTCAACGAGCTTGGATGCTCAT
1 ATCCATAATGAACTCAGACCAACTCAACGAGCTCGGATGCTCAT
**
64050138 ATCCATAATGAACTTGGACCAACTCAACGAGCTCGGATGCT
1 ATCCATAATGAACTCAGACCAACTCAACGAGCTCGGATGCT
64050179 TCACATATAT
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
44 38 1.00
ACGTcount: A:0.33, C:0.27, G:0.18, T:0.22
Consensus pattern (44 bp):
ATCCATAATGAACTCAGACCAACTCAACGAGCTCGGATGCTCAT
Found at i:64050269 original size:45 final size:44
Alignment explanation
Indices: 64050103--64050265 Score: 157
Period size: 45 Copynumber: 3.7 Consensus size: 44
64050093 CATCCATAAT
* ** * *
64050103 GAACTCAGACCAACTCAACGAGCTTGGATGCTCATATCCATAAT
1 GAACTCAGACCAACTCAACGAGCTTGGATGCTCACATATATCAC
** *
64050147 GAACTTGGACCAACTCAACGAGCTCGGATGCTTCACATATATCAC
1 GAACTCAGACCAACTCAACGAGCTTGGATGC-TCACATATATCAC
** * * *
64050192 GAACTTGGACCAACTCAACAAG-TTCGAATTTCTCACATATATCAC
1 GAACTCAGACCAACTCAACGAGCTT-GGA-TGCTCACATATATCAC
* *
64050237 GAACTCAGACCAACTTAACGAGGTTGGAT
1 GAACTCAGACCAACTCAACGAGCTTGGAT
64050266 TTCTAAATTC
Statistics
Matches: 98, Mismatches: 17, Indels: 8
0.80 0.14 0.07
Matches are distributed among these distances:
44 30 0.31
45 64 0.65
46 4 0.04
ACGTcount: A:0.34, C:0.26, G:0.17, T:0.23
Consensus pattern (44 bp):
GAACTCAGACCAACTCAACGAGCTTGGATGCTCACATATATCAC
Found at i:64056619 original size:506 final size:506
Alignment explanation
Indices: 64055663--64057184 Score: 2594
Period size: 506 Copynumber: 3.0 Consensus size: 506
64055653 TAAATGTTTT
*
64055663 TGGTTGTATAGTAATGCTTTGTAACCCTATTTTGACGACGGACACGGGTTAGGGGTGTTACATTT
1 TGGTTGTATAGTAATGCTTTGTAACCCTAATTTGACGACGGACACGGGTTAGGGGTGTTACATTT
* *
64055728 AGTGGTATTGAAGTTACGATTTAGTCGATTCTTGGACTAAACATAGCATGTATGGAGTCTAGAAA
66 AGTGGTATTAAAGTTACGATTTAGTCGGTTCTTGGACTAAACATAGCATGTATGGAGTCTAGAAA
64055793 TACATGTCGTTATATAACCTGTGATAGTGTGATAATTCCTGACACAAATTGAACTATATTTTCAT
131 TACATGTCGTTATATAACCTGTGATAGTGTGATAATTCCTGACACAAATTGAACTATATTTTCAT
64055858 ATAGATATGATGTCATCCAACCGAGGTGATTCCGATGAAGTTGGAAGTAACGCGCAAGCCTCCGT
196 ATAGATATGATGTCATCCAACCGAGGTGATTCCGATGAAGTTGGAAGTAACGCGCAAGCCTCCGT
* * *
64055923 TCACGGAGTAGGTTTTAATAGTAGTGGGCTCGTAGCTAAGGGCGACAGAGGTCAGGCTAAAGAAG
261 TCACGGAGCAGGTTTTAATAGTAGTGGGCCCGTAGCTGAGGGCGACAGAGGTCAGGCTAAAGAAG
* * *
64055988 CGTTCTCCTAGATGATGTCTAAATTGTTTACATAGTTTGTAAGAATGAACCCGTTGGCTCAACGA
326 CCTTCTCCTAGATGATGTCTAAATTGTTTACATAGTTCGTGAGAATGAACCCGTTGGCTCAACGA
* *
64056053 CCTCCACTCCTACCCGTACCCCAACCTGTTCCTATTATTCCTTAGGGTTTGGATCCAATATGTAC
391 CCTCCACTCCCACCCGTACCCCAACCTGTTCCTATTATTCCTTAGGGTTTGGAACCAATATGTAC
*
64056118 AAGTAATTCTTCAATTGATAAAATCTAAAAATATGGGGCTGAAGAGTTCCA
456 AAGTAATTCTTCAATTGATAAAATCTAAAAATATGGGGCTGAAGAGTTCCG
* * *
64056169 TGGTTGTACAGTAGTGCTTTGTAACCCTAATTTGACGACGGACACGGGTTAGAGGTGTTACATTT
1 TGGTTGTATAGTAATGCTTTGTAACCCTAATTTGACGACGGACACGGGTTAGGGGTGTTACATTT
*
64056234 AGTGGTATTAAAGTTACTATTTAGTCGGTTCTTGGACTAAACATAGCATGTATGGAGTCTAGAAA
66 AGTGGTATTAAAGTTACGATTTAGTCGGTTCTTGGACTAAACATAGCATGTATGGAGTCTAGAAA
* * * *
64056299 TACATGTCGCTATATAAACTATGATAGTGTGATAATTCCTGACGCAAATTGAACTATATTTTCAT
131 TACATGTCGTTATATAACCTGTGATAGTGTGATAATTCCTGACACAAATTGAACTATATTTTCAT
* * * * *
64056364 ATAGATATGATGTCATACAACCAAGGTGATTTCGATGAAGTTGGAAGTAACGCACAAGCCTCCGC
196 ATAGATATGATGTCATCCAACCGAGGTGATTCCGATGAAGTTGGAAGTAACGCGCAAGCCTCCGT
* * *
64056429 TCATGGAGCAAGTTTTAATAGTAGTGGGCCCGTAGCTGAGGGCGACAGAGGTTAGGCTAAAGAAG
261 TCACGGAGCAGGTTTTAATAGTAGTGGGCCCGTAGCTGAGGGCGACAGAGGTCAGGCTAAAGAAG
*
64056494 CCTTCTCCTAGATGATGTCTAAATTGTTTACATAGTTCGTGAGAATGAACCCGTTGGCTCAATGA
326 CCTTCTCCTAGATGATGTCTAAATTGTTTACATAGTTCGTGAGAATGAACCCGTTGGCTCAACGA
* *
64056559 GCTCCACTCCCACCCGTACCCCAACCTATTCCTATTATTCCTTAGGGTTTGGAACCAATATGTAC
391 CCTCCACTCCCACCCGTACCCCAACCTGTTCCTATTATTCCTTAGGGTTTGGAACCAATATGTAC
64056624 AAGTAATTCTTCAATTGATAAAATCTAAAAATATGGGGCTGAAGAGTTCCG
456 AAGTAATTCTTCAATTGATAAAATCTAAAAATATGGGGCTGAAGAGTTCCG
* * * **
64056675 TGGTTGTATAGTAATGCTTTATAACCCTAATTTAACGACAGACACAAGTTAGGGGTGTTACATTT
1 TGGTTGTATAGTAATGCTTTGTAACCCTAATTTGACGACGGACACGGGTTAGGGGTGTTACATTT
* * * *
64056740 AGTGGTATTAAAGTTACGGTTTTGTCTGTTCTTGGACTAAACGTAGCATGTATGGAGTCTAGAAA
66 AGTGGTATTAAAGTTACGATTTAGTCGGTTCTTGGACTAAACATAGCATGTATGGAGTCTAGAAA
* *
64056805 TACATGTCGTTATATAGCCTGTGATAGTGTGATAATTCCTAACACAAATTGAACTATATTTTCAT
131 TACATGTCGTTATATAACCTGTGATAGTGTGATAATTCCTGACACAAATTGAACTATATTTTCAT
64056870 ATAGATATGATGTCATCCAACCGAGGTGATTCCGATGAAGTTGGAAGTAACGCGCAAGCCTCCGT
196 ATAGATATGATGTCATCCAACCGAGGTGATTCCGATGAAGTTGGAAGTAACGCGCAAGCCTCCGT
* * **
64056935 TTACGGAGCAGGTTTTAATAGTAATGGGCCCGTAGCTGAGGGCGGTAGAGGTCAGGCTAAAGAAG
261 TCACGGAGCAGGTTTTAATAGTAGTGGGCCCGTAGCTGAGGGCGACAGAGGTCAGGCTAAAGAAG
* * *
64057000 CTTTCTCCTAGATGATGTCTAAATTGTTTACATAGTTCGTGAGAACGAACCTGTTGGCTCAACGA
326 CCTTCTCCTAGATGATGTCTAAATTGTTTACATAGTTCGTGAGAATGAACCCGTTGGCTCAACGA
64057065 CCTCCACTCCCACCCGTACCCCAACCTGTTCCTATTATTCCTTAGGGTTTGGAACCAATATGTAC
391 CCTCCACTCCCACCCGTACCCCAACCTGTTCCTATTATTCCTTAGGGTTTGGAACCAATATGTAC
*
64057130 AAGTAATTCTTCAATTGATAAAATCTGAAAATATGGGGCTGAAGAGTTCCG
456 AAGTAATTCTTCAATTGATAAAATCTAAAAATATGGGGCTGAAGAGTTCCG
64057181 TGGT
1 TGGT
64057185 ACGGCCGATG
Statistics
Matches: 947, Mismatches: 69, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
506 947 1.00
ACGTcount: A:0.29, C:0.18, G:0.22, T:0.31
Consensus pattern (506 bp):
TGGTTGTATAGTAATGCTTTGTAACCCTAATTTGACGACGGACACGGGTTAGGGGTGTTACATTT
AGTGGTATTAAAGTTACGATTTAGTCGGTTCTTGGACTAAACATAGCATGTATGGAGTCTAGAAA
TACATGTCGTTATATAACCTGTGATAGTGTGATAATTCCTGACACAAATTGAACTATATTTTCAT
ATAGATATGATGTCATCCAACCGAGGTGATTCCGATGAAGTTGGAAGTAACGCGCAAGCCTCCGT
TCACGGAGCAGGTTTTAATAGTAGTGGGCCCGTAGCTGAGGGCGACAGAGGTCAGGCTAAAGAAG
CCTTCTCCTAGATGATGTCTAAATTGTTTACATAGTTCGTGAGAATGAACCCGTTGGCTCAACGA
CCTCCACTCCCACCCGTACCCCAACCTGTTCCTATTATTCCTTAGGGTTTGGAACCAATATGTAC
AAGTAATTCTTCAATTGATAAAATCTAAAAATATGGGGCTGAAGAGTTCCG
Found at i:64066894 original size:40 final size:39
Alignment explanation
Indices: 64066863--64067072 Score: 242
Period size: 40 Copynumber: 5.3 Consensus size: 39
64066853 GGACTAAGAT
* *
64066863 CCGAAGGCATTTGTGCGAGATACAAATTCCGGGTTAAGCC
1 CCGAAGGCATTCGTGCGAGATACAAA-TCCGGGTTAAGTC
* *
64066903 CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGATAC-AAATCCGGGTTAAGTC
* *
64066943 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGATA-CAAATCCGGGTTAAGTC
* * *
64066983 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTATGTC
1 CCGAAGGCATTCGTGCGAGATA-CAAATCCGGGTTAAGTC
* * * * *
64067023 CCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTC
1 CCGAAGGCATTCGTGCGAGATAC-AAATCCGGGTTAAGTC
64067062 CCGAAGGCATT
1 CCGAAGGCATT
64067073 TGAACGAGGA
Statistics
Matches: 156, Mismatches: 11, Indels: 7
0.90 0.06 0.04
Matches are distributed among these distances:
39 34 0.22
40 119 0.76
41 3 0.02
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (39 bp):
CCGAAGGCATTCGTGCGAGATACAAATCCGGGTTAAGTC
Found at i:64067026 original size:120 final size:120
Alignment explanation
Indices: 64066810--64067072 Score: 309
Period size: 120 Copynumber: 2.2 Consensus size: 120
64066800 TTGAATGCTG
* *
64066810 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGAATAAATCCGGACTAAGATCCGAAGGCATT
* *
64066874 TGTGCGAGATACAAATTCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACTAAA
66 CGTGCGAGATACAAATTCCGGGTTAAGCCCCGAAGG-CATTGTGCGAGATACTAAA
* * * * **
64066930 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTATTAAATCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGAATAAATCCGGACTAAGAT-CCGAAGGCAT
* * * * * *
64066993 TCGTGCGAGTTATTAAA-TCCGGGTTATGTCCCGAAGGCATTGTGTGAGTTACTAAA
65 TCGTGCGAGATA-CAAATTCCGGGTTAAGCCCCGAAGGCATTGTGCGAGATACTAAA
* *
64067049 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
64067073 TGAACGAGGA
Statistics
Matches: 121, Mismatches: 19, Indels: 7
0.82 0.13 0.05
Matches are distributed among these distances:
119 38 0.31
120 74 0.61
121 9 0.07
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.26
Consensus pattern (120 bp):
TCCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGAATAAATCCGGACTAAGATCCGAAGGCATT
CGTGCGAGATACAAATTCCGGGTTAAGCCCCGAAGGCATTGTGCGAGATACTAAA
Found at i:64067092 original size:79 final size:80
Alignment explanation
Indices: 64066811--64067107 Score: 230
Period size: 80 Copynumber: 3.7 Consensus size: 80
64066801 TGAATGCTGT
* ** * * * **
64066811 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATATCCGGACTAAGAT-CCGAAGGCATT
1 CCGGGCTAAGTCCCGAAGGCATTCGAAC-GAGTGACTAAATCCGGGTTAAG-TCCCGAAGGCATT
* * *
64066874 TGTGCGAGATAC-AAATT
64 CGTGCGAGTTACTAAA-A
* * * * **
64066891 CCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGAT-ACTAAATCCGGGTTAAGTCCCGAAGGCATTC
1 CCGGGCTAAGTCCCGAAGGCATTCGAACGAG-TGACTAAATCCGGGTTAAGTCCCGAAGGCATTC
* *
64066955 GTGCGAGTTATTAAAT
65 GTGCGAGTTACTAAAA
* ** * * *
64066971 CCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTATGTCCCGAAGGCATT-G
1 CCGGGCTAAGTCCCGAAGGCATTCGAACGAGTGACTAAATCCGGGTTAAGTCCCGAAGGCATTCG
*
64067035 TGTGAGTTACTAAAA
66 TGCGAGTTACTAAAA
* * * *
64067050 CCGGGCTATGTCCCGAAGGCATTTGAACGAG-GAGCTATATCC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGGCATTCGAACGAGTGA-CTAAATCCGGGTTAAGTCCCGAAGG
64067108 TACGTGATTT
Statistics
Matches: 183, Mismatches: 28, Indels: 14
0.81 0.12 0.06
Matches are distributed among these distances:
78 15 0.08
79 47 0.26
80 110 0.60
81 11 0.06
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (80 bp):
CCGGGCTAAGTCCCGAAGGCATTCGAACGAGTGACTAAATCCGGGTTAAGTCCCGAAGGCATTCG
TGCGAGTTACTAAAA
Found at i:64072666 original size:26 final size:26
Alignment explanation
Indices: 64072635--64072698 Score: 110
Period size: 26 Copynumber: 2.5 Consensus size: 26
64072625 ATTCCGACTT
64072635 ACAGCTCATGTGAGCAGGTCCATTTC
1 ACAGCTCATGTGAGCAGGTCCATTTC
64072661 ACAGCTCATGTGAGCAGGTCCATTTC
1 ACAGCTCATGTGAGCAGGTCCATTTC
* *
64072687 ATAGCTTATGTG
1 ACAGCTCATGTG
64072699 TGCAATGATG
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 36 1.00
ACGTcount: A:0.23, C:0.23, G:0.23, T:0.30
Consensus pattern (26 bp):
ACAGCTCATGTGAGCAGGTCCATTTC
Found at i:64078283 original size:3 final size:3
Alignment explanation
Indices: 64078277--64078304 Score: 56
Period size: 3 Copynumber: 9.3 Consensus size: 3
64078267 TTTCAACTTC
64078277 AAT AAT AAT AAT AAT AAT AAT AAT AAT A
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT A
64078305 TCTTATTATT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:64090611 original size:15 final size:15
Alignment explanation
Indices: 64090591--64090620 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
64090581 GTGAAGAGAA
64090591 ATATGTGAAATAATG
1 ATATGTGAAATAATG
64090606 ATATGTGAAATAATG
1 ATATGTGAAATAATG
64090621 TACAGATGTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.47, C:0.00, G:0.20, T:0.33
Consensus pattern (15 bp):
ATATGTGAAATAATG
Found at i:64091355 original size:26 final size:26
Alignment explanation
Indices: 64091326--64091429 Score: 163
Period size: 26 Copynumber: 4.0 Consensus size: 26
64091316 TGGTACAAAT
*
64091326 TGATAATGGGTTAGGTAAGTATTCCA
1 TGATAATGGGTTAGGTAAATATTCCA
*
64091352 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATATTCCA
*
64091378 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATATTCCA
* *
64091404 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATATTCCA
64091430 GGATGGGCAT
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 73 1.00
ACGTcount: A:0.33, C:0.08, G:0.24, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATATTCCA
Found at i:64093070 original size:27 final size:26
Alignment explanation
Indices: 64093028--64093168 Score: 165
Period size: 27 Copynumber: 5.2 Consensus size: 26
64093018 AGTAAGCGTC
* *
64093028 CTGGTGGCTATGCCACAATTACCTGAT
1 CTGGTGGCTCTGCCAC-ATTATCTGAT
* *
64093055 CTGGTGGCTCTACCACATATATCTGTT
1 CTGGTGGCTCTGCCACAT-TATCTGAT
*
64093082 CTGGTGGCTATGCCACGATTATCTGAT
1 CTGGTGGCTCTGCCAC-ATTATCTGAT
*
64093109 CTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTCTGCCACAT-TATCTGAT
* *
64093136 CTAGTGGCTCTGCCACAATATCTGTAT
1 CTGGTGGCTCTGCCACATTATCTG-AT
64093163 CTGGTG
1 CTGGTG
64093169 ACTTCGTCAC
Statistics
Matches: 97, Mismatches: 13, Indels: 8
0.82 0.11 0.07
Matches are distributed among these distances:
26 10 0.10
27 85 0.88
28 2 0.02
ACGTcount: A:0.18, C:0.25, G:0.23, T:0.34
Consensus pattern (26 bp):
CTGGTGGCTCTGCCACATTATCTGAT
Found at i:64093110 original size:54 final size:53
Alignment explanation
Indices: 64093028--64093168 Score: 210
Period size: 54 Copynumber: 2.6 Consensus size: 53
64093018 AGTAAGCGTC
*
64093028 CTGGTGGCTATGCCACAATTACCTGATCTGGTGGCTCTACCACATATATCTGTT
1 CTGGTGGCTATGCCAC-ATTATCTGATCTGGTGGCTCTACCACATATATCTGTT
*
64093082 CTGGTGGCTATGCCACGATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTATGCCAC-ATTATCTGATCTGGTGGCTCTACCACATATATCTGTT
* * *
64093136 CTAGTGGCTCTGCCACAATATCTGTATCTGGTG
1 CTGGTGGCTATGCCACATTATCTG-ATCTGGTG
64093169 ACTTCGTCAC
Statistics
Matches: 80, Mismatches: 6, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
53 7 0.09
54 73 0.91
ACGTcount: A:0.18, C:0.25, G:0.23, T:0.34
Consensus pattern (53 bp):
CTGGTGGCTATGCCACATTATCTGATCTGGTGGCTCTACCACATATATCTGTT
Found at i:64099372 original size:70 final size:69
Alignment explanation
Indices: 64099274--64099404 Score: 217
Period size: 70 Copynumber: 1.9 Consensus size: 69
64099264 CTTGAAAATA
* *
64099274 TAAACACTATTGAGGATGGGCTTATGAAAAGCTCAGTGTGAGTCGAATAATTATTTTAACGAGTA
1 TAAACACTATTGAGGATGAGCTTATGAAAAGCTCAGTGTGAGTCAAATAATTATTTTAACGAGTA
64099339 AAGT
66 AAGT
* *
64099343 TAAACACTACTTGGGGGTGAGCTTATGAAAAGCTCAGTGTGAGTCAAATAATTATTTTAACG
1 TAAACACTA-TTGAGGATGAGCTTATGAAAAGCTCAGTGTGAGTCAAATAATTATTTTAACG
64099405 GGCAAAAAAA
Statistics
Matches: 57, Mismatches: 4, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
69 9 0.16
70 48 0.84
ACGTcount: A:0.35, C:0.11, G:0.23, T:0.31
Consensus pattern (69 bp):
TAAACACTATTGAGGATGAGCTTATGAAAAGCTCAGTGTGAGTCAAATAATTATTTTAACGAGTA
AAGT
Found at i:64103227 original size:42 final size:42
Alignment explanation
Indices: 64103179--64103288 Score: 148
Period size: 42 Copynumber: 2.6 Consensus size: 42
64103169 CACGGCAGAG
* *
64103179 ACACGGGCTTGTGTCTCATCCATGTGTACTACACGGCCTAGA
1 ACACGGGCATGTGTCTCAGCCATGTGTACTACACGGCCTAGA
* * * *
64103221 ACACGGGCGTGTGTCTTAGCCGTGTGTGCTACACGGCCTAGA
1 ACACGGGCATGTGTCTCAGCCATGTGTACTACACGGCCTAGA
* *
64103263 ACACGGGCATGTGTCTTAGCCGTGTG
1 ACACGGGCATGTGTCTCAGCCATGTG
64103289 AAGCTTGCAC
Statistics
Matches: 62, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
42 62 1.00
ACGTcount: A:0.18, C:0.26, G:0.30, T:0.25
Consensus pattern (42 bp):
ACACGGGCATGTGTCTCAGCCATGTGTACTACACGGCCTAGA
Found at i:64114299 original size:18 final size:18
Alignment explanation
Indices: 64114272--64114306 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
64114262 GATAAATCCT
64114272 AATCAAGGATTTACTCCC
1 AATCAAGGATTTACTCCC
*
64114290 AATCAGGGATTTACTCC
1 AATCAAGGATTTACTCC
64114307 TATATTAACA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.31, C:0.26, G:0.14, T:0.29
Consensus pattern (18 bp):
AATCAAGGATTTACTCCC
Found at i:64116041 original size:16 final size:17
Alignment explanation
Indices: 64116010--64116043 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
64116000 GTATCCTCTC
64116010 TGTAAACAACCTTTCCT
1 TGTAAACAACCTTTCCT
*
64116027 TGTAAA-AATCTTTCCT
1 TGTAAACAACCTTTCCT
64116043 T
1 T
64116044 TAATAAAAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 10 0.62
17 6 0.38
ACGTcount: A:0.29, C:0.24, G:0.06, T:0.41
Consensus pattern (17 bp):
TGTAAACAACCTTTCCT
Found at i:64117970 original size:47 final size:48
Alignment explanation
Indices: 64117900--64118167 Score: 270
Period size: 47 Copynumber: 5.7 Consensus size: 48
64117890 TAAGATGTCA
* * *
64117900 ATGCCATGTCCCAGACATAGTCTTATACTGGCTCAT-ATCTC-AAGTCG
1 ATGCCATGTCCCAGACAT-GTCTTACACTAGCTCATCATCTCGAAGCCG
* *
64117947 ATGCCATGTCCCAGACATGGTCTTACACTAACT-ATCATCTCGTAGCCG
1 ATGCCATGTCCCAGACAT-GTCTTACACTAGCTCATCATCTCGAAGCCG
* * * * *
64117995 ATG-CATGTCCCAGACATGTTTTACACTAGCTTAT-GTCTCGAGGCCA
1 ATGCCATGTCCCAGACATGTCTTACACTAGCTCATCATCTCGAAGCCG
*
64118041 ATG-CATGTCCCAGACATGTCTTACACTAGCTC-TCGTCTC-AATGCCG
1 ATGCCATGTCCCAGACATGTCTTACACTAGCTCATCATCTCGAA-GCCG
* * * **
64118087 ATGCCATGTCCCAGACATAGTCTTACATTGGCTC-TCATAAT-GTGGCCG
1 ATGCCATGTCCCAGACAT-GTCTTACACTAGCTCATCAT-CTCGAAGCCG
64118135 ATG-CATGTCCCAGACATGTCTTACACTAGCTCA
1 ATGCCATGTCCCAGACATGTCTTACACTAGCTCA
64118168 CAAACAAATG
Statistics
Matches: 187, Mismatches: 24, Indels: 20
0.81 0.10 0.09
Matches are distributed among these distances:
45 2 0.01
46 76 0.41
47 78 0.42
48 30 0.16
49 1 0.01
ACGTcount: A:0.24, C:0.29, G:0.18, T:0.29
Consensus pattern (48 bp):
ATGCCATGTCCCAGACATGTCTTACACTAGCTCATCATCTCGAAGCCG
Found at i:64118159 original size:140 final size:141
Alignment explanation
Indices: 64117898--64118165 Score: 373
Period size: 140 Copynumber: 1.9 Consensus size: 141
64117888 GGTAAGATGT
* * *
64117898 CAATGCCATGTCCCAGACATAGTCTTATACTGGCTCATATCTCAAGTCGATGCCATGTCCCAGAC
1 CAATGCCATGTCCCAGACATAGTCTTACACTAGCTCATATCTCAAGCCGATGCCATGTCCCAGAC
* * *
64117963 ATGGTCTTACACTAACTATCATCTCGTAGCCGATGCATGTCCCAGACATGTTTTACACTAGCTTA
66 ATAGTCTTACACTAACTATCATATCGTAGCCGATGCATGTCCCAGACATGTCTTACACTAGCTTA
64118028 TGTCTCGAGGC
131 TGTCTCGAGGC
*
64118039 CAATG-CATGTCCCAGACAT-GTCTTACACTAGCTC-TCGTCTCAATGCCGATGCCATGTCCCAG
1 CAATGCCATGTCCCAGACATAGTCTTACACTAGCTCAT-ATCTCAA-GCCGATGCCATGTCCCAG
* ** * *
64118101 ACATAGTCTTACATTGGCTCTCATAAT-GTGGCCGATGCATGTCCCAGACATGTCTTACACTAGC
64 ACATAGTCTTACACTAACTATCAT-ATCGTAGCCGATGCATGTCCCAGACATGTCTTACACTAGC
64118165 T
128 T
64118166 CACAAACAAA
Statistics
Matches: 112, Mismatches: 12, Indels: 7
0.85 0.09 0.05
Matches are distributed among these distances:
138 1 0.01
139 19 0.17
140 86 0.77
141 6 0.05
ACGTcount: A:0.24, C:0.29, G:0.18, T:0.29
Consensus pattern (141 bp):
CAATGCCATGTCCCAGACATAGTCTTACACTAGCTCATATCTCAAGCCGATGCCATGTCCCAGAC
ATAGTCTTACACTAACTATCATATCGTAGCCGATGCATGTCCCAGACATGTCTTACACTAGCTTA
TGTCTCGAGGC
Found at i:64125049 original size:46 final size:46
Alignment explanation
Indices: 64124971--64125194 Score: 249
Period size: 46 Copynumber: 4.8 Consensus size: 46
64124961 TGGGTAAGGT
* * *
64124971 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTATCATCTCGTA
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTAGCTCTCATCTCATA
* * *
64125019 GCCGATGCATGTCCCAGGCATGTCTTACACTAGCT-TACGTCTCGA-G
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGCTCT-CATCTC-ATA
*
64125065 GCCGATGCATGTCCCAGACATGTCTTACACTAGCTCTCGTCTCAATA
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGCTCTCATCTC-ATA
* * * *
64125112 -CCGATGCCATGTCCCAGACATAGTCTTACACCAGCTCTTATAAT-ATG
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTAGCTCTCAT-CTCATA
64125159 GCCGATGCATGTCCCAGACATGTCTTACACTAGCTC
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGCTC
64125195 ACAAACAAAT
Statistics
Matches: 154, Mismatches: 14, Indels: 18
0.83 0.08 0.10
Matches are distributed among these distances:
45 1 0.01
46 79 0.51
47 44 0.29
48 29 0.19
49 1 0.01
ACGTcount: A:0.23, C:0.31, G:0.19, T:0.27
Consensus pattern (46 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTAGCTCTCATCTCATA
Found at i:64125165 original size:94 final size:92
Alignment explanation
Indices: 64124971--64125194 Score: 274
Period size: 94 Copynumber: 2.4 Consensus size: 92
64124961 TGGGTAAGGT
* * *
64124971 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTATCATCTCGTAGCCGATGCATGTCCCAG
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTAGCTCTCATCTCATAGCCGATGCATGTCCCAG
* * * *
64125036 GCATGTCTTACACTAGCTTACGTCTCGAG
64 ACATGTCTTACACCAGCTTACGTATAGAG
*
64125065 GCCGATGCATGTCCCAGACATGTCTTACACTAGCTCTCGTCTCAATA-CCGATGCCATGTCCCAG
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGCTCTCATCTC-ATAGCCGATG-CATGTCCCAG
* *
64125129 ACATAGTCTTACACCAGC-T-CTTATAATATG
64 ACAT-GTCTTACACCAGCTTACGTAT-AGA-G
64125159 GCCGATGCATGTCCCAGACATGTCTTACACTAGCTC
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGCTC
64125195 ACAAACAAAT
Statistics
Matches: 115, Mismatches: 10, Indels: 10
0.85 0.07 0.07
Matches are distributed among these distances:
92 28 0.24
93 31 0.27
94 56 0.49
ACGTcount: A:0.23, C:0.31, G:0.19, T:0.27
Consensus pattern (92 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTAGCTCTCATCTCATAGCCGATGCATGTCCCAGAC
ATGTCTTACACCAGCTTACGTATAGAG
Found at i:64125352 original size:27 final size:27
Alignment explanation
Indices: 64125320--64125379 Score: 120
Period size: 27 Copynumber: 2.2 Consensus size: 27
64125310 TTCATGCTAT
64125320 ATTAACTCAATACAATTCAATACATAC
1 ATTAACTCAATACAATTCAATACATAC
64125347 ATTAACTCAATACAATTCAATACATAC
1 ATTAACTCAATACAATTCAATACATAC
64125374 ATTAAC
1 ATTAAC
64125380 AATGTAGTTG
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 33 1.00
ACGTcount: A:0.48, C:0.22, G:0.00, T:0.30
Consensus pattern (27 bp):
ATTAACTCAATACAATTCAATACATAC
Found at i:64138626 original size:41 final size:41
Alignment explanation
Indices: 64138517--64138649 Score: 180
Period size: 41 Copynumber: 3.2 Consensus size: 41
64138507 TCGGGCTTTA
* * * *
64138517 TGCCTAGCAAGCTTTGTGCCGGTGTATAATATCAGGCCTAT
1 TGCCTAGCAAGCTTTATGCCGGTGTATTATATTAGGCTTAT
64138558 TGCCTAGCAAGCTTTATGCCGGTGTATTATATTAGGCTTAT
1 TGCCTAGCAAGCTTTATGCCGGTGTATTATATTAGGCTTAT
* *
64138599 TGCCTAGCAGGCTCTT-TGCCGGTGTATTATACTAGGCTT-T
1 TGCCTAGCAAGCT-TTATGCCGGTGTATTATATTAGGCTTAT
64138639 ATGCCTAGCAA
1 -TGCCTAGCAA
64138650 ATTTTATGTG
Statistics
Matches: 83, Mismatches: 7, Indels: 4
0.88 0.07 0.04
Matches are distributed among these distances:
40 1 0.01
41 80 0.96
42 2 0.02
ACGTcount: A:0.21, C:0.21, G:0.23, T:0.35
Consensus pattern (41 bp):
TGCCTAGCAAGCTTTATGCCGGTGTATTATATTAGGCTTAT
Found at i:64143195 original size:27 final size:27
Alignment explanation
Indices: 64143165--64143228 Score: 119
Period size: 27 Copynumber: 2.4 Consensus size: 27
64143155 CTAAAATAAG
64143165 ATAGAATTACCATTTTACCCTCGATTT
1 ATAGAATTACCATTTTACCCTCGATTT
64143192 ATAGAATTACCATTTTACCCTCGATTT
1 ATAGAATTACCATTTTACCCTCGATTT
*
64143219 ATAAAATTAC
1 ATAGAATTAC
64143229 TGAAATACCC
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
27 36 1.00
ACGTcount: A:0.34, C:0.20, G:0.06, T:0.39
Consensus pattern (27 bp):
ATAGAATTACCATTTTACCCTCGATTT
Found at i:64143237 original size:27 final size:27
Alignment explanation
Indices: 64143180--64143293 Score: 113
Period size: 27 Copynumber: 4.2 Consensus size: 27
64143170 ATTACCATTT
* **
64143180 TACCCTCGATTTATAGAATTA-CCATTT
1 TACCCTCGATTTATAAAATTACCCA-AA
**
64143207 TACCCTCGATTTATAAAATTACTGAAA
1 TACCCTCGATTTATAAAATTACCCAAA
* * *
64143234 TACCCTTGGTTTACAAAATTACCCAAA
1 TACCCTCGATTTATAAAATTACCCAAA
** *
64143261 TACCCTCGATCAATAAAATTACCAAAA
1 TACCCTCGATTTATAAAATTACCCAAA
64143288 TACCCT
1 TACCCT
64143294 TGTAAGATAG
Statistics
Matches: 70, Mismatches: 16, Indels: 2
0.80 0.18 0.02
Matches are distributed among these distances:
27 69 0.99
28 1 0.01
ACGTcount: A:0.38, C:0.25, G:0.06, T:0.32
Consensus pattern (27 bp):
TACCCTCGATTTATAAAATTACCCAAA
Found at i:64143307 original size:27 final size:27
Alignment explanation
Indices: 64143277--64143499 Score: 241
Period size: 27 Copynumber: 8.3 Consensus size: 27
64143267 CGATCAATAA
* * *
64143277 AATTACCAAAATACCCTTGTAAGATAG
1 AATTACCAAAATACCCCTGTAGGGTAG
* *
64143304 AATTATCAAAATACCCCTATAGGGTAG
1 AATTACCAAAATACCCCTGTAGGGTAG
* *
64143331 AATTACCGAAATACCCCTATAGGGTAG
1 AATTACCAAAATACCCCTGTAGGGTAG
* *
64143358 AATTATCGAAATACCCCTGTAGGGTAG
1 AATTACCAAAATACCCCTGTAGGGTAG
* **
64143385 AATTATCGCAATACCCCTGTAGGGTAG
1 AATTACCAAAATACCCCTGTAGGGTAG
* * *
64143412 AATTACCGAAATATCCCTGTGGGGTAG
1 AATTACCAAAATACCCCTGTAGGGTAG
* * *
64143439 AATTACTAAAATACCCTTGTAGGGTGG
1 AATTACCAAAATACCCCTGTAGGGTAG
* * * *
64143466 AATTACCAAGATA-CCTTGTGGGGTAA
1 AATTACCAAAATACCCCTGTAGGGTAG
64143492 AATTACCA
1 AATTACCA
64143500 TTTTTCCCCT
Statistics
Matches: 171, Mismatches: 25, Indels: 1
0.87 0.13 0.01
Matches are distributed among these distances:
26 18 0.11
27 153 0.89
ACGTcount: A:0.36, C:0.19, G:0.19, T:0.26
Consensus pattern (27 bp):
AATTACCAAAATACCCCTGTAGGGTAG
Found at i:64143335 original size:81 final size:81
Alignment explanation
Indices: 64143250--64143429 Score: 211
Period size: 81 Copynumber: 2.2 Consensus size: 81
64143240 TGGTTTACAA
* *
64143250 AATTACCCAAATACCCTCGATCA-ATAAAATTACCAAAATACCCTTGTAAGATAGAATTATCAAA
1 AATTACCGAAATACCCTCGAT-AGATAAAATTACCAAAATACCCCTGTAAGATAGAATTATCAAA
64143314 ATACCCCTATAGGGTAG
65 ATACCCCTATAGGGTAG
* * * * * * * **
64143331 AATTACCGAAATACCC-CTATAGGGTAGAATTATCGAAATACCCCTGTAGGGTAGAATTATCGCA
1 AATTACCGAAATACCCTCGATA-GATAAAATTACCAAAATACCCCTGTAAGATAGAATTATCAAA
*
64143395 ATACCCCTGTAGGGTAG
65 ATACCCCTATAGGGTAG
64143412 AATTACCGAAATATCCCT
1 AATTACCGAAATA-CCCT
64143430 GTGGGGTAGA
Statistics
Matches: 83, Mismatches: 12, Indels: 6
0.82 0.12 0.06
Matches are distributed among these distances:
79 1 0.01
80 3 0.04
81 76 0.92
82 3 0.04
ACGTcount: A:0.38, C:0.22, G:0.14, T:0.25
Consensus pattern (81 bp):
AATTACCGAAATACCCTCGATAGATAAAATTACCAAAATACCCCTGTAAGATAGAATTATCAAAA
TACCCCTATAGGGTAG
Found at i:64143437 original size:81 final size:81
Alignment explanation
Indices: 64143277--64143480 Score: 266
Period size: 81 Copynumber: 2.5 Consensus size: 81
64143267 CGATCAATAA
* * *
64143277 AATTACCAAAATACCCTTGTAAGATAGAATTATCAAAATACCCCTATAGGGTAGAATTACCGAAA
1 AATTACTAAAATACCCTTGTAGGGTAGAATTATCAAAATACCCCTATAGGGTAGAATTACCGAAA
64143342 TACCCCTATAGGGTAG
66 TACCCCTATAGGGTAG
* * ** *
64143358 AATTA-TCGAAATACCCCTGTAGGGTAGAATTATCGCAATACCCCTGTAGGGTAGAATTACCGAA
1 AATTACT-AAAATACCCTTGTAGGGTAGAATTATCAAAATACCCCTATAGGGTAGAATTACCGAA
* * *
64143422 ATATCCCTGTGGGGTAG
65 ATACCCCTATAGGGTAG
* * *
64143439 AATTACTAAAATACCCTTGTAGGGTGGAATTACCAAGATACC
1 AATTACTAAAATACCCTTGTAGGGTAGAATTATCAAAATACC
64143481 TTGTGGGGTA
Statistics
Matches: 103, Mismatches: 18, Indels: 4
0.82 0.14 0.03
Matches are distributed among these distances:
81 102 0.99
82 1 0.01
ACGTcount: A:0.36, C:0.20, G:0.19, T:0.25
Consensus pattern (81 bp):
AATTACTAAAATACCCTTGTAGGGTAGAATTATCAAAATACCCCTATAGGGTAGAATTACCGAAA
TACCCCTATAGGGTAG
Found at i:64143977 original size:22 final size:21
Alignment explanation
Indices: 64143928--64143989 Score: 70
Period size: 22 Copynumber: 2.9 Consensus size: 21
64143918 AAGCCTTCTA
* *
64143928 ATTATGGCTTTGTGTCAACCT
1 ATTATGGCTCTGTGCCAACCT
*
64143949 ACATATGGCTCTGTGCCAACCT
1 A-TTATGGCTCTGTGCCAACCT
*
64143971 GATTATGGCTGTGTGCCAA
1 -ATTATGGCTCTGTGCCAA
64143990 ACGTATTTGC
Statistics
Matches: 34, Mismatches: 5, Indels: 3
0.81 0.12 0.07
Matches are distributed among these distances:
21 1 0.03
22 32 0.94
23 1 0.03
ACGTcount: A:0.21, C:0.23, G:0.23, T:0.34
Consensus pattern (21 bp):
ATTATGGCTCTGTGCCAACCT
Found at i:64144184 original size:26 final size:27
Alignment explanation
Indices: 64144155--64144220 Score: 82
Period size: 27 Copynumber: 2.5 Consensus size: 27
64144145 TAAGTGGCTT
*
64144155 TGCCACATTATCTGT-TCTGGTGGA-TC
1 TGCCACAATATCTGTATCTGGT-GACTC
*
64144181 TGCCACAACATCTGTATCTGGTGACTC
1 TGCCACAATATCTGTATCTGGTGACTC
*
64144208 TGTCACAATATCT
1 TGCCACAATATCT
64144221 AATAACTGAG
Statistics
Matches: 34, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
26 15 0.44
27 19 0.56
ACGTcount: A:0.21, C:0.26, G:0.18, T:0.35
Consensus pattern (27 bp):
TGCCACAATATCTGTATCTGGTGACTC
Found at i:64144396 original size:6 final size:6
Alignment explanation
Indices: 64144381--64144446 Score: 64
Period size: 6 Copynumber: 10.8 Consensus size: 6
64144371 ATTCTGTTAC
* * *
64144381 CTGATA CTGATT CTGATT CTGATT CTG-TCAC CTGATT CTGAAT CTGATT
1 CTGATT CTGATT CTGATT CTGATT CTGAT--T CTGATT CTGATT CTGATT
64144430 CTGATT CT-AGTT CTGAT
1 CTGATT CTGA-TT CTGAT
64144447 AATGTTTCTT
Statistics
Matches: 50, Mismatches: 5, Indels: 10
0.77 0.08 0.15
Matches are distributed among these distances:
5 2 0.04
6 43 0.86
7 4 0.08
8 1 0.02
ACGTcount: A:0.20, C:0.20, G:0.17, T:0.44
Consensus pattern (6 bp):
CTGATT
Found at i:64144414 original size:31 final size:31
Alignment explanation
Indices: 64144371--64144437 Score: 107
Period size: 31 Copynumber: 2.2 Consensus size: 31
64144361 CTGATTTTTT
* *
64144371 ATTCTGTTACCTGATACTGATTCTGATTCTG
1 ATTCTGTCACCTGATACTGAATCTGATTCTG
*
64144402 ATTCTGTCACCTGATTCTGAATCTGATTCTG
1 ATTCTGTCACCTGATACTGAATCTGATTCTG
64144433 ATTCT
1 ATTCT
64144438 AGTTCTGATA
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
31 33 1.00
ACGTcount: A:0.19, C:0.21, G:0.15, T:0.45
Consensus pattern (31 bp):
ATTCTGTCACCTGATACTGAATCTGATTCTG
Found at i:64144791 original size:7 final size:7
Alignment explanation
Indices: 64144779--64144810 Score: 64
Period size: 7 Copynumber: 4.6 Consensus size: 7
64144769 AATTTTTTGG
64144779 ATTTGAA
1 ATTTGAA
64144786 ATTTGAA
1 ATTTGAA
64144793 ATTTGAA
1 ATTTGAA
64144800 ATTTGAA
1 ATTTGAA
64144807 ATTT
1 ATTT
64144811 TACTTATTGT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 25 1.00
ACGTcount: A:0.41, C:0.00, G:0.12, T:0.47
Consensus pattern (7 bp):
ATTTGAA
Found at i:64147028 original size:32 final size:32
Alignment explanation
Indices: 64146988--64147065 Score: 95
Period size: 32 Copynumber: 2.5 Consensus size: 32
64146978 AAAAGCTGTG
* *
64146988 TGGG-CACACGGGCAAGGCAAATCTGGCTATC
1 TGGGCCACACGGGCAAGGCAAATCTAGCCATC
* * * *
64147019 TGGGCCACACAGGCAAGGCCAATCTAGCCGTG
1 TGGGCCACACGGGCAAGGCAAATCTAGCCATC
64147051 TGGGCCACACGGGCA
1 TGGGCCACACGGGCA
64147066 TGTAAGCCCA
Statistics
Matches: 39, Mismatches: 7, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
31 4 0.10
32 35 0.90
ACGTcount: A:0.24, C:0.29, G:0.33, T:0.13
Consensus pattern (32 bp):
TGGGCCACACGGGCAAGGCAAATCTAGCCATC
Found at i:64154800 original size:43 final size:43
Alignment explanation
Indices: 64154751--64154859 Score: 184
Period size: 43 Copynumber: 2.6 Consensus size: 43
64154741 GGCCTTCAAA
*
64154751 CCTAGCAGGCTATAATGCCGGTGAGTTAATATCGGGCTTCGAG
1 CCTAGCAGGCTATAATGCCGGTGAGTTAATATCAGGCTTCGAG
64154794 CCTAGCAGGCTATAATGCCGGTGAGTTAATATCAGGCTTCGAG
1 CCTAGCAGGCTATAATGCCGGTGAGTTAATATCAGGCTTCGAG
* *
64154837 CCTAGCAGGC-CTCATGCCGGTGA
1 CCTAGCAGGCTATAATGCCGGTGA
64154860 ATGAGTTCAG
Statistics
Matches: 63, Mismatches: 3, Indels: 1
0.94 0.04 0.01
Matches are distributed among these distances:
42 11 0.17
43 52 0.83
ACGTcount: A:0.23, C:0.24, G:0.29, T:0.24
Consensus pattern (43 bp):
CCTAGCAGGCTATAATGCCGGTGAGTTAATATCAGGCTTCGAG
Found at i:64160414 original size:46 final size:46
Alignment explanation
Indices: 64160347--64160620 Score: 415
Period size: 46 Copynumber: 6.0 Consensus size: 46
64160337 GCTTTCTGAA
* *
64160347 ATGAAACGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGAT
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
*
64160393 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACAGGAT
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
*
64160439 ATAAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
* *
64160485 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGAC
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
* *
64160531 ATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
* * * * *
64160577 A-GAAAATGAGTAAGACCATAGTTGAAAGACACTATGGCATCATG
1 ATG-AAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATG
64160621 TCAAAGATAA
Statistics
Matches: 213, Mismatches: 14, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
45 1 0.00
46 212 1.00
ACGTcount: A:0.40, C:0.15, G:0.24, T:0.22
Consensus pattern (46 bp):
ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
Found at i:64160857 original size:16 final size:17
Alignment explanation
Indices: 64160836--64160868 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
64160826 ATGATGGAGC
64160836 ATGAAAT-ATTGATATA
1 ATGAAATGATTGATATA
64160852 ATGAAATGATTGATATA
1 ATGAAATGATTGATATA
64160869 TACTTATGAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 7 0.44
17 9 0.56
ACGTcount: A:0.48, C:0.00, G:0.15, T:0.36
Consensus pattern (17 bp):
ATGAAATGATTGATATA
Found at i:64176504 original size:19 final size:18
Alignment explanation
Indices: 64176477--64176523 Score: 60
Period size: 18 Copynumber: 2.6 Consensus size: 18
64176467 TTATATATTC
64176477 TTTAGAATTTTTTTAAAAA
1 TTTA-AATTTTTTTAAAAA
64176496 TTTATAA-TTTTTTAAAAA
1 TTTA-AATTTTTTTAAAAA
*
64176514 TATAAATTTT
1 TTTAAATTTT
64176524 AGAATTTTTA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
17 2 0.08
18 17 0.68
19 6 0.24
ACGTcount: A:0.43, C:0.00, G:0.02, T:0.55
Consensus pattern (18 bp):
TTTAAATTTTTTTAAAAA
Found at i:64176521 original size:17 final size:18
Alignment explanation
Indices: 64176485--64176523 Score: 62
Period size: 18 Copynumber: 2.2 Consensus size: 18
64176475 TCTTTAGAAT
*
64176485 TTTTTTAAAAATTTATAA
1 TTTTTTAAAAATATATAA
64176503 TTTTTTAAAAATATA-AA
1 TTTTTTAAAAATATATAA
64176520 TTTT
1 TTTT
64176524 AGAATTTTTA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
17 6 0.30
18 14 0.70
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (18 bp):
TTTTTTAAAAATATATAA
Found at i:64176537 original size:18 final size:19
Alignment explanation
Indices: 64176514--64176550 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
64176504 TTTTTAAAAA
64176514 TATAAAT-TTTAGAATTTT
1 TATAAATATTTAGAATTTT
*
64176532 TATAAATATTTTGAATTTT
1 TATAAATATTTAGAATTTT
64176551 AATTTTTTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 7 0.41
19 10 0.59
ACGTcount: A:0.38, C:0.00, G:0.05, T:0.57
Consensus pattern (19 bp):
TATAAATATTTAGAATTTT
Found at i:64179418 original size:6 final size:6
Alignment explanation
Indices: 64179409--64179474 Score: 123
Period size: 6 Copynumber: 11.0 Consensus size: 6
64179399 ATATATATTG
*
64179409 TTATTT TTATAT TTATAT TTATAT TTATAT TTATAT TTATAT TTATAT
1 TTATAT TTATAT TTATAT TTATAT TTATAT TTATAT TTATAT TTATAT
64179457 TTATAT TTATAT TTATAT
1 TTATAT TTATAT TTATAT
64179475 AAATATTTTT
Statistics
Matches: 59, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
6 59 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (6 bp):
TTATAT
Found at i:64179552 original size:23 final size:24
Alignment explanation
Indices: 64179526--64179575 Score: 57
Period size: 23 Copynumber: 2.1 Consensus size: 24
64179516 TATAAAAAGT
*
64179526 AATAATATTAATATATTA-TTTTA
1 AATAATAATAATATATTACTTTTA
* * *
64179549 AATAGTAATATTATTTTACTTTTA
1 AATAATAATAATATATTACTTTTA
64179573 AAT
1 AAT
64179576 GTTAATATAA
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
23 14 0.64
24 8 0.36
ACGTcount: A:0.44, C:0.02, G:0.02, T:0.52
Consensus pattern (24 bp):
AATAATAATAATATATTACTTTTA
Found at i:64183619 original size:21 final size:21
Alignment explanation
Indices: 64183595--64183639 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
64183585 AAAAAATTAT
* *
64183595 AAAATTTTATAAAATCGT-AAG
1 AAAATTATACAAAAT-GTAAAG
64183616 AAAATTATACAAAATGTAAAG
1 AAAATTATACAAAATGTAAAG
64183637 AAA
1 AAA
64183640 TATAAATTTT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 2 0.10
21 19 0.90
ACGTcount: A:0.60, C:0.04, G:0.09, T:0.27
Consensus pattern (21 bp):
AAAATTATACAAAATGTAAAG
Found at i:64183620 original size:29 final size:27
Alignment explanation
Indices: 64183542--64183624 Score: 91
Period size: 28 Copynumber: 3.0 Consensus size: 27
64183532 ATTAGAAAAA
64183542 AAAATATA-AAAATCGT-AAAAATTAT
1 AAAATATATAAAATCGTAAAAAATTAT
*
64183567 AAAATATATAGAAAT-ATAAAAAAATTAT
1 AAAATATATA-AAATCGT-AAAAAATTAT
*
64183595 AAAATTTTATAAAATCGTAAGAAAATTAT
1 AAAA-TATATAAAATCGTAA-AAAATTAT
64183624 A
1 A
64183625 CAAAATGTAA
Statistics
Matches: 48, Mismatches: 3, Indels: 10
0.79 0.05 0.16
Matches are distributed among these distances:
25 8 0.17
26 2 0.04
27 4 0.08
28 19 0.40
29 15 0.31
ACGTcount: A:0.63, C:0.02, G:0.05, T:0.30
Consensus pattern (27 bp):
AAAATATATAAAATCGTAAAAAATTAT
Found at i:64183940 original size:25 final size:25
Alignment explanation
Indices: 64183902--64183996 Score: 90
Period size: 25 Copynumber: 3.8 Consensus size: 25
64183892 TTCTTTAACG
* *
64183902 ATTTTTATAAAAAAATATAATTTCTA-
1 ATTTTTA-ATAAAAATTTAATTT-TAT
64183928 ATTTTTAAT-AAAATTTAATTTTTAT
1 ATTTTTAATAAAAATTTAA-TTTTAT
*
64183953 ATTTTT-ATTAAAATTTAATATTTAT
1 ATTTTTAATAAAAATTTAAT-TTTAT
*
64183978 ATTTTT-ATTAAAATTTAAT
1 ATTTTTAATAAAAATTTAAT
64183997 ATTTTTTCTA
Statistics
Matches: 63, Mismatches: 2, Indels: 9
0.85 0.03 0.12
Matches are distributed among these distances:
24 13 0.21
25 43 0.68
26 7 0.11
ACGTcount: A:0.43, C:0.01, G:0.00, T:0.56
Consensus pattern (25 bp):
ATTTTTAATAAAAATTTAATTTTAT
Found at i:64183975 original size:19 final size:17
Alignment explanation
Indices: 64183966--64184030 Score: 76
Period size: 19 Copynumber: 3.6 Consensus size: 17
64183956 TTTATTAAAA
*
64183966 TTTAATATTTATATTTT
1 TTTAAAATTTATATTTT
64183983 TATTAAAATTTAATATTTT
1 T-TTAAAATTT-ATATTTT
64184002 TTCTAAAATTTATCATTTT
1 TT-TAAAATTTAT-ATTTT
*
64184021 TTTATAATTT
1 TTTAAAATTT
64184031 TTTCTAATTT
Statistics
Matches: 42, Mismatches: 2, Indels: 7
0.82 0.04 0.14
Matches are distributed among these distances:
17 1 0.02
18 18 0.43
19 23 0.55
ACGTcount: A:0.34, C:0.03, G:0.00, T:0.63
Consensus pattern (17 bp):
TTTAAAATTTATATTTT
Found at i:64183997 original size:25 final size:25
Alignment explanation
Indices: 64183928--64184000 Score: 128
Period size: 25 Copynumber: 2.9 Consensus size: 25
64183918 ATAATTTCTA
* *
64183928 ATTTTTAATAAAATTTAATTTTTAT
1 ATTTTTATTAAAATTTAATATTTAT
64183953 ATTTTTATTAAAATTTAATATTTAT
1 ATTTTTATTAAAATTTAATATTTAT
64183978 ATTTTTATTAAAATTTAATATTT
1 ATTTTTATTAAAATTTAATATTT
64184001 TTTCTAAAAT
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 46 1.00
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (25 bp):
ATTTTTATTAAAATTTAATATTTAT
Found at i:64185147 original size:21 final size:21
Alignment explanation
Indices: 64185106--64185145 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 21
64185096 GGGGTATATA
64185106 ATTAATATATAATAAAATTTC
1 ATTAATATATAATAAAATTTC
*
64185127 ATTAATTTAT-ATAAAATTT
1 ATTAATATATAATAAAATTT
64185146 TCTTTGTAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 9 0.50
21 9 0.50
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (21 bp):
ATTAATATATAATAAAATTTC
Found at i:64193082 original size:119 final size:120
Alignment explanation
Indices: 64192833--64193090 Score: 337
Period size: 119 Copynumber: 2.2 Consensus size: 120
64192823 GCTACTCGTT
* * * *
64192833 CAAATGCCTTTGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGGGACTTAACTCGGATT-TAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCG
* * *
64192897 GTTATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
65 GATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTAGCA
*
64192953 CAAATGCCTTCGGGACTTAACTCGGATTTAGTAACTCGCACCAATGCCTTCGGG-CTTAGCCCGG
1 CAAATGCCTTCGGGACTTAACTCGGATTTAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGG
* * * *
64193017 A-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
66 ATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGCCCGGATATAGTAAC-TAGCA
64193073 CAAA-GCCTTCGGGACTTA
1 CAAATGCCTTCGGGACTTA
64193091 GCCCGGACAT
Statistics
Matches: 122, Mismatches: 12, Indels: 9
0.85 0.08 0.06
Matches are distributed among these distances:
118 4 0.03
119 62 0.51
120 54 0.44
121 2 0.02
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (120 bp):
CAAATGCCTTCGGGACTTAACTCGGATTTAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGG
ATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTAGCA
Found at i:64193097 original size:40 final size:40
Alignment explanation
Indices: 64192814--64193097 Score: 353
Period size: 40 Copynumber: 7.1 Consensus size: 40
64192804 CGGAATTTAA
** * *
64192814 CCGGATATAGCT-ACTCGTTCAAATGCCTTTGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
*
64192854 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
64192894 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
64192934 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* * *
64192974 TCGGATTTAGTAACTCGCACCAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
64193013 CCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
64193053 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
64193093 CCGGA
1 CCGGA
64193098 CATCATTCGA
Statistics
Matches: 216, Mismatches: 21, Indels: 14
0.86 0.08 0.06
Matches are distributed among these distances:
38 2 0.01
39 31 0.14
40 171 0.79
41 12 0.06
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:64198014 original size:58 final size:58
Alignment explanation
Indices: 64197921--64198030 Score: 157
Period size: 58 Copynumber: 1.9 Consensus size: 58
64197911 ATATACTTCA
* * * **
64197921 ATGCTCACACAGAGCTACGGTAGTCTACAATTTATGTGGAATTACTACCAATACATCC
1 ATGCTCACACAGAGCTACGGTAGCCCACAACTTATGCAGAATTACTACCAATACATCC
* *
64197979 ATGCTTACACAGAGCTACGGTAGCCCACAACTTATGCAGAATTGCTACCAAT
1 ATGCTCACACAGAGCTACGGTAGCCCACAACTTATGCAGAATTACTACCAAT
64198031 CACTTACCTC
Statistics
Matches: 45, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
58 45 1.00
ACGTcount: A:0.33, C:0.25, G:0.16, T:0.25
Consensus pattern (58 bp):
ATGCTCACACAGAGCTACGGTAGCCCACAACTTATGCAGAATTACTACCAATACATCC
Found at i:64198071 original size:63 final size:57
Alignment explanation
Indices: 64197921--64198072 Score: 151
Period size: 58 Copynumber: 2.5 Consensus size: 57
64197911 ATATACTTCA
* **
64197921 ATGCTCACACAGAGCTACGGTAGTCTACAATTTATGTGGAATTACTACCAATACATCC
1 ATGCTCACACAGAGCTACGGTAGTC-ACAACTTATGCAGAATTACTACCAATACATCC
* * * *
64197979 ATGCTTACACAGAGCTACGGTAGCCCACAACTTATGCAGAATTGCTACCAATCACTTACCTCG
1 ATGCTCACACAGAGCTACGGTAG-TCACAACTTATGCAGAATTACTACCAAT-AC--A--TCC
* *
64198042 ATGCTCACAAAGCGCTACGGTAGTTCACAAC
1 ATGCTCACACAGAGCTACGGTAG-TCACAAC
64198073 ATATACGACT
Statistics
Matches: 76, Mismatches: 12, Indels: 7
0.80 0.13 0.07
Matches are distributed among these distances:
58 44 0.58
59 3 0.04
61 1 0.01
63 28 0.37
ACGTcount: A:0.32, C:0.28, G:0.16, T:0.24
Consensus pattern (57 bp):
ATGCTCACACAGAGCTACGGTAGTCACAACTTATGCAGAATTACTACCAATACATCC
Found at i:64198837 original size:36 final size:36
Alignment explanation
Indices: 64198797--64198870 Score: 148
Period size: 36 Copynumber: 2.1 Consensus size: 36
64198787 AACCATGTCC
64198797 AAAAATCTACTAACTTTCAAAATTTCAACATATACT
1 AAAAATCTACTAACTTTCAAAATTTCAACATATACT
64198833 AAAAATCTACTAACTTTCAAAATTTCAACATATACT
1 AAAAATCTACTAACTTTCAAAATTTCAACATATACT
64198869 AA
1 AA
64198871 GTAGTATTTT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 38 1.00
ACGTcount: A:0.49, C:0.19, G:0.00, T:0.32
Consensus pattern (36 bp):
AAAAATCTACTAACTTTCAAAATTTCAACATATACT
Found at i:64199090 original size:8 final size:8
Alignment explanation
Indices: 64199053--64199113 Score: 90
Period size: 8 Copynumber: 7.8 Consensus size: 8
64199043 TGTTTTTCAC
64199053 ATATATATA
1 ATATA-ATA
64199062 ATATAAT-
1 ATATAATA
64199069 ATAT-ATA
1 ATATAATA
*
64199076 ATGTAATA
1 ATATAATA
64199084 ATATAATA
1 ATATAATA
64199092 ATATAATA
1 ATATAATA
64199100 ATATAATA
1 ATATAATA
64199108 ATATAA
1 ATATAA
64199114 ATTGATATAT
Statistics
Matches: 48, Mismatches: 2, Indels: 5
0.87 0.04 0.09
Matches are distributed among these distances:
6 2 0.04
7 7 0.15
8 34 0.71
9 5 0.10
ACGTcount: A:0.59, C:0.00, G:0.02, T:0.39
Consensus pattern (8 bp):
ATATAATA
Found at i:64202885 original size:42 final size:41
Alignment explanation
Indices: 64202833--64202983 Score: 158
Period size: 42 Copynumber: 3.6 Consensus size: 41
64202823 CTCTAACGAT
* * *
64202833 CTTCTGTTTAACTCATATGAGTTTCCATTCAGCTCTTTTGAG
1 CTTCTATTTAAC-CTTATGGGTTTCCATTCAGCTCTTTTGAG
* ** *
64202875 TTTCTATTTAACCTTGATGGGTTTCTGTTCTGCTCTTTTGAG
1 CTTCTATTTAACCTT-ATGGGTTTCCATTCAGCTCTTTTGAG
* * *
64202917 CTTCTATTTAACCCTTATGGGTTTTCATTCAGCTCTTATGAA
1 CTTCTATTTAA-CCTTATGGGTTTCCATTCAGCTCTTTTGAG
* *
64202959 CTTCCATTCAACCCTTATGGGTTTC
1 CTTCTATTTAA-CCTTATGGGTTTC
64202984 TGTTTAGCAC
Statistics
Matches: 90, Mismatches: 17, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
41 2 0.02
42 84 0.93
43 4 0.04
ACGTcount: A:0.17, C:0.22, G:0.15, T:0.46
Consensus pattern (41 bp):
CTTCTATTTAACCTTATGGGTTTCCATTCAGCTCTTTTGAG
Found at i:64202953 original size:84 final size:84
Alignment explanation
Indices: 64202833--64202987 Score: 204
Period size: 84 Copynumber: 1.8 Consensus size: 84
64202823 CTCTAACGAT
* * * ** * *
64202833 CTTCTGTTTAACTCATATGAGTTTCCATTCAGCTCTTTTGAGTTTCTATTTAA-CCTTGATGGGT
1 CTTCTATTTAACCCATATGAGTTTCCATTCAGCTCTTATGAACTTCCATTCAACCCTT-ATGGGT
64202897 TTCTGTTCTGCTCTTTTGAG
65 TTCTGTTCTGCTCTTTTGAG
* * *
64202917 CTTCTATTTAACCCTTATGGGTTTTCATTCAGCTCTTATGAACTTCCATTCAACCCTTATGGGTT
1 CTTCTATTTAACCCATATGAGTTTCCATTCAGCTCTTATGAACTTCCATTCAACCCTTATGGGTT
64202982 TCTGTT
66 TCTGTT
64202988 TAGCACTTAT
Statistics
Matches: 60, Mismatches: 10, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
84 56 0.93
85 4 0.07
ACGTcount: A:0.17, C:0.21, G:0.15, T:0.47
Consensus pattern (84 bp):
CTTCTATTTAACCCATATGAGTTTCCATTCAGCTCTTATGAACTTCCATTCAACCCTTATGGGTT
TCTGTTCTGCTCTTTTGAG
Found at i:64202997 original size:42 final size:42
Alignment explanation
Indices: 64202863--64203008 Score: 136
Period size: 42 Copynumber: 3.5 Consensus size: 42
64202853 GTTTCCATTC
* * * *
64202863 AGCTCTTTTGAGTTTCTATTTAA-CCTTGATGGGTTTCTGTTCT
1 AGCTCTTATGAGCTTCCATTCAACCCTT-ATGGGTTTCTGTT-T
* * * * *
64202906 -GCTCTTTTGAGCTTCTATTTAACCCTTATGGGTTT-TCATTC
1 AGCTCTTATGAGCTTCCATTCAACCCTTATGGGTTTCT-GTTT
*
64202947 AGCTCTTATGAACTTCCATTCAACCCTTATGGGTTTCTGTTT
1 AGCTCTTATGAGCTTCCATTCAACCCTTATGGGTTTCTGTTT
* *
64202989 AGCACTTATGTGCTTCCATT
1 AGCTCTTATGAGCTTCCATT
64203009 TAGCCTTCGA
Statistics
Matches: 87, Mismatches: 12, Indels: 9
0.81 0.11 0.08
Matches are distributed among these distances:
41 1 0.01
42 81 0.93
43 5 0.06
ACGTcount: A:0.16, C:0.21, G:0.16, T:0.47
Consensus pattern (42 bp):
AGCTCTTATGAGCTTCCATTCAACCCTTATGGGTTTCTGTTT
Found at i:64203004 original size:84 final size:84
Alignment explanation
Indices: 64202833--64203010 Score: 198
Period size: 84 Copynumber: 2.1 Consensus size: 84
64202823 CTCTAACGAT
* * * ** * *
64202833 CTTCTGTTTAACTCATATGAGTTTCCATTCAGCTCTTTTGAGTTTCTATTTAACCTTGATGGGTT
1 CTTCTATTTAACCCATATGAGTTTCCATTCAGCTCTTATGAACTTCCATTCAACCTTGATGGGTT
* *
64202898 TCTGTTCTGCTCTTTTGAG
66 TCTGTTCTGCACTTATGAG
* * *
64202917 CTTCTATTTAACCCTTATGGGTTTTCATTCAGCTCTTATGAACTTCCATTCAACCCTT-ATGGGT
1 CTTCTATTTAACCCATATGAGTTTCCATTCAGCTCTTATGAACTTCCATTCAA-CCTTGATGGGT
*
64202981 TTCTGTT-TAGCACTTATGTG
65 TTCTGTTCT-GCACTTATGAG
*
64203001 CTTCCATTTA
1 CTTCTATTTA
64203011 GCCTTCGAGC
Statistics
Matches: 78, Mismatches: 14, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
83 1 0.01
84 73 0.94
85 4 0.05
ACGTcount: A:0.17, C:0.21, G:0.15, T:0.47
Consensus pattern (84 bp):
CTTCTATTTAACCCATATGAGTTTCCATTCAGCTCTTATGAACTTCCATTCAACCTTGATGGGTT
TCTGTTCTGCACTTATGAG
Found at i:64209042 original size:17 final size:16
Alignment explanation
Indices: 64209013--64209051 Score: 51
Period size: 17 Copynumber: 2.4 Consensus size: 16
64209003 GTTTATTTTT
*
64209013 TATTTATAATTATTAA
1 TATTAATAATTATTAA
64209029 TATTAATAATTTATTAA
1 TATTAATAA-TTATTAA
*
64209046 TTTTAA
1 TATTAA
64209052 AAAATAATAT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
16 8 0.40
17 12 0.60
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (16 bp):
TATTAATAATTATTAA
Found at i:64213932 original size:2 final size:2
Alignment explanation
Indices: 64213925--64213962 Score: 76
Period size: 2 Copynumber: 19.0 Consensus size: 2
64213915 AAAGAGCGAC
64213925 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
64213963 TGTGTGAGGG
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (2 bp):
AG
Found at i:64214917 original size:17 final size:19
Alignment explanation
Indices: 64214895--64214940 Score: 53
Period size: 17 Copynumber: 2.5 Consensus size: 19
64214885 ATAATAGAAA
64214895 TAAAAAGTTATTTTT-A-T
1 TAAAAAGTTATTTTTAAGT
*
64214912 TAAAAA-TATTTTTTTAAGT
1 TAAAAAGT-TATTTTTAAGT
64214931 TAAAAAGTTA
1 TAAAAAGTTA
64214941 AAAATTTTAA
Statistics
Matches: 23, Mismatches: 2, Indels: 6
0.74 0.06 0.19
Matches are distributed among these distances:
16 1 0.04
17 12 0.52
18 1 0.04
19 8 0.35
20 1 0.04
ACGTcount: A:0.46, C:0.00, G:0.07, T:0.48
Consensus pattern (19 bp):
TAAAAAGTTATTTTTAAGT
Found at i:64215272 original size:3 final size:3
Alignment explanation
Indices: 64215264--64215308 Score: 81
Period size: 3 Copynumber: 15.0 Consensus size: 3
64215254 CAAATCAAAC
*
64215264 ATT ATT ATT ATT GTT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
64215309 GTCGTCGTCG
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
3 40 1.00
ACGTcount: A:0.31, C:0.00, G:0.02, T:0.67
Consensus pattern (3 bp):
ATT
Found at i:64217074 original size:20 final size:20
Alignment explanation
Indices: 64217049--64217168 Score: 118
Period size: 20 Copynumber: 6.0 Consensus size: 20
64217039 TTGTACAAGA
64217049 TTGCACTTCGGTGTCTCTAT
1 TTGCACTTCGGTGTCTCTAT
* **
64217069 TTGCACTTCGGTGCCTCTGC
1 TTGCACTTCGGTGTCTCTAT
* * *
64217089 TTACACTTCGATGTCTCTGT
1 TTGCACTTCGGTGTCTCTAT
*
64217109 TTGCACTTCGGTGTCTCAGAT
1 TTGCACTTCGGTGTCTC-TAT
* *
64217130 TT-CACTTCGATGTCTCTGT
1 TTGCACTTCGGTGTCTCTAT
*
64217149 TTGCACTAT-GGTGCCTCTAT
1 TTGCACT-TCGGTGTCTCTAT
64217169 ATAGCATTCT
Statistics
Matches: 80, Mismatches: 17, Indels: 6
0.78 0.17 0.06
Matches are distributed among these distances:
19 3 0.04
20 73 0.91
21 4 0.05
ACGTcount: A:0.12, C:0.27, G:0.20, T:0.42
Consensus pattern (20 bp):
TTGCACTTCGGTGTCTCTAT
Found at i:64217096 original size:40 final size:40
Alignment explanation
Indices: 64217047--64217166 Score: 161
Period size: 40 Copynumber: 3.0 Consensus size: 40
64217037 ACTTGTACAA
* * *
64217047 GATTGCACTTCGGTGTCTCTATTTGCACTTCGGTGCCTCT
1 GATTACACTTCGATGTCTCTGTTTGCACTTCGGTGCCTCT
* * *
64217087 GCTTACACTTCGATGTCTCTGTTTGCACTTCGGTGTCTCA
1 GATTACACTTCGATGTCTCTGTTTGCACTTCGGTGCCTCT
*
64217127 GATTTCACTTCGATGTCTCTGTTTGCACTAT-GGTGCCTCT
1 GATTACACTTCGATGTCTCTGTTTGCACT-TCGGTGCCTCT
64217167 ATATAGCATT
Statistics
Matches: 69, Mismatches: 10, Indels: 2
0.85 0.12 0.02
Matches are distributed among these distances:
40 68 0.99
41 1 0.01
ACGTcount: A:0.12, C:0.27, G:0.21, T:0.41
Consensus pattern (40 bp):
GATTACACTTCGATGTCTCTGTTTGCACTTCGGTGCCTCT
Found at i:64218989 original size:30 final size:30
Alignment explanation
Indices: 64218953--64219012 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
64218943 TTCCCGAGCC
64218953 TAGGGGCAAAA-GTGTAATTATGCAAAAGTT
1 TAGGGGCAAAATG-GTAATTATGCAAAAGTT
* *
64218983 TAGGGGCAAAATGGTAATTTTGCCAAAGTT
1 TAGGGGCAAAATGGTAATTATGCAAAAGTT
64219013 CGTATTAAAG
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
30 26 0.96
31 1 0.04
ACGTcount: A:0.37, C:0.08, G:0.27, T:0.28
Consensus pattern (30 bp):
TAGGGGCAAAATGGTAATTATGCAAAAGTT
Found at i:64219739 original size:49 final size:50
Alignment explanation
Indices: 64219659--64219904 Score: 325
Period size: 49 Copynumber: 4.9 Consensus size: 50
64219649 AGCTATTGTG
*
64219659 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
* * * *
64219709 -GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCTGATAACTT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAA-TT
* * * * **
64219759 CGATCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
* *
64219809 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
* * *
64219859 -GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATA
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATA
64219905 GCTTCGGCTA
Statistics
Matches: 169, Mismatches: 25, Indels: 5
0.85 0.13 0.03
Matches are distributed among these distances:
49 83 0.49
50 48 0.28
51 38 0.22
ACGTcount: A:0.26, C:0.19, G:0.27, T:0.28
Consensus pattern (50 bp):
AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
Found at i:64219796 original size:28 final size:28
Alignment explanation
Indices: 64219764--64219847 Score: 83
Period size: 28 Copynumber: 3.2 Consensus size: 28
64219754 AACTTCGATC
64219764 ACGTGTGTAGTACTAAGTGCAGGCTACT
1 ACGTGTGTAGTACTAAGTGCAGGCTACT
* * *
64219792 ACGTGTATCAG-A-T-GGT-TAGG-T-C-
1 ACGTGTGT-AGTACTAAGTGCAGGCTACT
64219814 ACGTGTGTAGTACTAAGTGCAGGCTACT
1 ACGTGTGTAGTACTAAGTGCAGGCTACT
64219842 ACGTGT
1 ACGTGT
64219848 ACCGGATAAT
Statistics
Matches: 42, Mismatches: 6, Indels: 16
0.66 0.09 0.25
Matches are distributed among these distances:
21 2 0.05
22 8 0.19
23 2 0.05
24 3 0.07
25 6 0.14
26 3 0.07
27 2 0.05
28 14 0.33
29 2 0.05
ACGTcount: A:0.24, C:0.17, G:0.30, T:0.30
Consensus pattern (28 bp):
ACGTGTGTAGTACTAAGTGCAGGCTACT
Found at i:64224618 original size:49 final size:49
Alignment explanation
Indices: 64224546--64224709 Score: 211
Period size: 49 Copynumber: 3.3 Consensus size: 49
64224536 TGAGGTCACG
64224546 TGTGTAGTACTAAGTGTAGGCTACTACGTGTACCAGATAATTGGTCGCA
1 TGTGTAGTACTAAGTGTAGGCTACTACGTGTACCAGATAATTGGTCGCA
* * * * * ** * *
64224595 TGTGTAGTATTAAGTGTAGGCTACTATGCGTACCTGAAAACTTCAATCACG
1 TGTGTAGTACTAAGTGTAGGCTACTACGTGTACCAGATAA-TT-GGTCGCA
* *
64224646 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCGCA
1 TGTGTAGTACTAAGTGTAGGCTACTACGTGTACCAGATAATTGGTCGCA
64224695 TGTGTAGTACTAAGT
1 TGTGTAGTACTAAGT
64224710 CCAAGCTGCT
Statistics
Matches: 94, Mismatches: 19, Indels: 4
0.80 0.16 0.03
Matches are distributed among these distances:
49 53 0.56
50 4 0.04
51 37 0.39
ACGTcount: A:0.27, C:0.16, G:0.26, T:0.31
Consensus pattern (49 bp):
TGTGTAGTACTAAGTGTAGGCTACTACGTGTACCAGATAATTGGTCGCA
Found at i:64224722 original size:100 final size:100
Alignment explanation
Indices: 64224541--64224728 Score: 313
Period size: 100 Copynumber: 1.9 Consensus size: 100
64224531 TATTGTGAGG
* *
64224541 TCACGTGTGTAGTACTAAGTGTAGGCTACTACGTGTACCAGATAATTGGTCGCATGTGTAGTATT
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCGCATGTGTAGTACT
** *
64224606 AAGTGTAGGCTACTATGCGTACCTGAAAACTTCAA
66 AAGTCCAAGCTACTATGCGTACCTGAAAACTTCAA
*
64224641 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCGCATGTGTAGTACT
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCGCATGTGTAGTACT
*
64224706 AAGTCCAAGCTGCTATGCGTACC
66 AAGTCCAAGCTACTATGCGTACC
64224729 AGATAGCTTC
Statistics
Matches: 81, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
100 81 1.00
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (100 bp):
TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCGCATGTGTAGTACT
AAGTCCAAGCTACTATGCGTACCTGAAAACTTCAA
Found at i:64224728 original size:49 final size:49
Alignment explanation
Indices: 64224546--64224733 Score: 205
Period size: 49 Copynumber: 3.8 Consensus size: 49
64224536 TGAGGTCACG
* *
64224546 TGTGTAGTACTAAGTGTAGGCTACTACGTGTACCAGATAATTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATAATTGGTCGCA
* * * * * ** * *
64224595 TGTGTAGTATTAAGTGTAGGCTACTATGCGTACCTGAAAACTTCAATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATAA-TT-GGTCGCA
* *
64224646 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATAATTGGTCGCA
* * * *
64224695 TGTGTAGTACTAAGTCCAAGCTGCTATGCGTACCAGATA
1 TGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATA
64224734 GCTTCGGCTA
Statistics
Matches: 112, Mismatches: 25, Indels: 4
0.79 0.18 0.03
Matches are distributed among these distances:
49 71 0.63
50 4 0.04
51 37 0.33
ACGTcount: A:0.27, C:0.18, G:0.25, T:0.30
Consensus pattern (49 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATAATTGGTCGCA
Found at i:64230036 original size:62 final size:62
Alignment explanation
Indices: 64229939--64230062 Score: 212
Period size: 62 Copynumber: 2.0 Consensus size: 62
64229929 ACGACCATGT
* *
64229939 TTCCCTACTTCGAATGCCCACACAGCTTGGCCACACGACCGTGTGACCCCTGCAGTGTTGAA
1 TTCCCTACTTCGAATGCCCACACACCTTGGCCACACGACCGTGTGACCCCTACAGTGTTGAA
* *
64230001 TTCCCTACTTCGAATGCCCACATACCTTGGCCACACGATCGTGTGACCCCTACAGTGTTGAA
1 TTCCCTACTTCGAATGCCCACACACCTTGGCCACACGACCGTGTGACCCCTACAGTGTTGAA
64230063 AATTTTCATT
Statistics
Matches: 58, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
62 58 1.00
ACGTcount: A:0.22, C:0.35, G:0.19, T:0.24
Consensus pattern (62 bp):
TTCCCTACTTCGAATGCCCACACACCTTGGCCACACGACCGTGTGACCCCTACAGTGTTGAA
Found at i:64233755 original size:34 final size:34
Alignment explanation
Indices: 64233672--64233755 Score: 98
Period size: 35 Copynumber: 2.4 Consensus size: 34
64233662 AACAAACTTG
* * * *
64233672 TTCTACCAACTTAACACGACACATGGGTAGTTAC
1 TTCTACCAACTTAATACGACACATGGGCAATCAC
64233706 TAT-TCACCAACTTAATACGACACATGGGCAATCAC
1 T-TCT-ACCAACTTAATACGACACATGGGCAATCAC
*
64233741 TTCTGCCAACTTAAT
1 TTCTACCAACTTAAT
64233756 CATAACTTAT
Statistics
Matches: 42, Mismatches: 5, Indels: 6
0.79 0.09 0.11
Matches are distributed among these distances:
34 13 0.31
35 29 0.69
ACGTcount: A:0.33, C:0.27, G:0.12, T:0.27
Consensus pattern (34 bp):
TTCTACCAACTTAATACGACACATGGGCAATCAC
Found at i:64236889 original size:26 final size:26
Alignment explanation
Indices: 64236841--64236890 Score: 64
Period size: 26 Copynumber: 1.9 Consensus size: 26
64236831 TTTCATCCCT
**
64236841 ATTTTACCCTCAGTAAATTTTTGACG
1 ATTTTACCCTCAGTAAAAATTTGACG
**
64236867 ATTTTACCCTTGGTAAAAATTTGA
1 ATTTTACCCTCAGTAAAAATTTGA
64236891 GAAAATATGT
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
26 20 1.00
ACGTcount: A:0.30, C:0.16, G:0.12, T:0.42
Consensus pattern (26 bp):
ATTTTACCCTCAGTAAAAATTTGACG
Found at i:64238362 original size:25 final size:24
Alignment explanation
Indices: 64238329--64238377 Score: 80
Period size: 25 Copynumber: 2.0 Consensus size: 24
64238319 GAGGGATTTT
*
64238329 TTATTTTATTTAATATTAATATAA
1 TTATTTTATTTAAAATTAATATAA
64238353 TTATATTTATTTAAAATTAATATAA
1 TTAT-TTTATTTAAAATTAATATAA
64238378 AATTTAAATT
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
24 4 0.17
25 19 0.83
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (24 bp):
TTATTTTATTTAAAATTAATATAA
Found at i:64238400 original size:18 final size:18
Alignment explanation
Indices: 64238351--64238400 Score: 50
Period size: 18 Copynumber: 2.9 Consensus size: 18
64238341 ATATTAATAT
64238351 AATT-ATATT-TATTTAA
1 AATTAATATTATATTTAA
* *
64238367 AATTAATATAAAATTTAA
1 AATTAATATTATATTTAA
* *
64238385 ATTTATTATTATATTT
1 AATTAATATTATATTT
64238401 TTTTGAAAAT
Statistics
Matches: 26, Mismatches: 6, Indels: 2
0.76 0.18 0.06
Matches are distributed among these distances:
16 4 0.15
17 4 0.15
18 18 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (18 bp):
AATTAATATTATATTTAA
Found at i:64238769 original size:3 final size:3
Alignment explanation
Indices: 64238713--64238754 Score: 84
Period size: 3 Copynumber: 14.0 Consensus size: 3
64238703 TAGTTTACTC
64238713 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
64238755 ATTTTTCAAT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 39 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:64241453 original size:24 final size:24
Alignment explanation
Indices: 64241426--64241482 Score: 105
Period size: 24 Copynumber: 2.4 Consensus size: 24
64241416 AAAGGGTTAA
64241426 ATAACTATTTGAGACATGAATTTG
1 ATAACTATTTGAGACATGAATTTG
*
64241450 ATAACTATTTGAGGCATGAATTTG
1 ATAACTATTTGAGACATGAATTTG
64241474 ATAACTATT
1 ATAACTATT
64241483 CTCATATTGG
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 32 1.00
ACGTcount: A:0.37, C:0.09, G:0.16, T:0.39
Consensus pattern (24 bp):
ATAACTATTTGAGACATGAATTTG
Found at i:64254134 original size:16 final size:17
Alignment explanation
Indices: 64254115--64254148 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
64254105 ATATATATTT
*
64254115 TTATTTT-ATTTTTTAA
1 TTATTTTAAATTTTTAA
64254131 TTATTTTAAATTTTTAA
1 TTATTTTAAATTTTTAA
64254148 T
1 T
64254149 ATAACCATTT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 7 0.44
17 9 0.56
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (17 bp):
TTATTTTAAATTTTTAA
Found at i:64254268 original size:26 final size:24
Alignment explanation
Indices: 64254224--64254273 Score: 73
Period size: 26 Copynumber: 2.0 Consensus size: 24
64254214 ATTTGGTTTA
*
64254224 ATATTTGTTTTTATGTTTTTAAAT
1 ATATTTGTTTTTATATTTTTAAAT
64254248 ATATTTGATTTATTATATTTTTAAAT
1 ATATTTG-TTT-TTATATTTTTAAAT
64254274 TTTTTTATTT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 7 0.30
25 3 0.13
26 13 0.57
ACGTcount: A:0.30, C:0.00, G:0.06, T:0.64
Consensus pattern (24 bp):
ATATTTGTTTTTATATTTTTAAAT
Found at i:64257630 original size:67 final size:68
Alignment explanation
Indices: 64257520--64257773 Score: 208
Period size: 67 Copynumber: 3.8 Consensus size: 68
64257510 AAAGAGGTTA
* * * ** *** *
64257520 TAAGGTGTAAGACCATAGCTCGGCTATGACAATCAGTACAGTCCACCAGGATGTTAAATAAAAGG
1 TAAGGTGTAAGACCATAGCTCAGCTATGGCAACCAGTGTAGTCCACCAGGACCCTAAACAAAAGG
64257585 GAT
66 GAT
* * * ***
64257588 TAAGGGGTAATACCA-AGCTCAGCTATGGCAACCAGTGTAGTCCACTAGGACCCTAAACATGGGG
1 TAAGGTGTAAGACCATAGCTCAGCTATGGCAACCAGTGTAGTCCACCAGGACCCTAAACAAAAGG
64257652 GAT
66 GAT
* * ** ** **
64257655 TAAGGTGTAAGACCATAACTCAGCTATAGCAACCAGTGTAGTCTGCCAGGACATTAAACATGA-G
1 TAAGGTGTAAGACCATAGCTCAGCTATGGCAACCAGTGTAGTCCACCAGGACCCTAAACAAAAGG
64257719 GAT
66 GAT
* * * * * * *
64257722 TACGGTGTAAGGCCATAACTC-GAATTTGGCAACTAGTGTAGTCCTCCAGGAC
1 TAAGGTGTAAGACCATAGCTCAG-CTATGGCAACCAGTGTAGTCCACCAGGAC
64257774 AATAAACACG
Statistics
Matches: 151, Mismatches: 33, Indels: 5
0.80 0.17 0.03
Matches are distributed among these distances:
66 1 0.01
67 98 0.65
68 52 0.34
ACGTcount: A:0.33, C:0.20, G:0.24, T:0.22
Consensus pattern (68 bp):
TAAGGTGTAAGACCATAGCTCAGCTATGGCAACCAGTGTAGTCCACCAGGACCCTAAACAAAAGG
GAT
Found at i:64274268 original size:23 final size:23
Alignment explanation
Indices: 64274243--64274286 Score: 81
Period size: 22 Copynumber: 2.0 Consensus size: 23
64274233 TTTGTTTGGT
64274243 TTTTGATGATTTCTAC-TTTTTC
1 TTTTGATGATTTCTACGTTTTTC
64274265 TTTTGATGATTTCTACGTTTTT
1 TTTTGATGATTTCTACGTTTTT
64274287 TTTATTGTTG
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
22 16 0.76
23 5 0.24
ACGTcount: A:0.14, C:0.11, G:0.11, T:0.64
Consensus pattern (23 bp):
TTTTGATGATTTCTACGTTTTTC
Found at i:64281134 original size:9 final size:9
Alignment explanation
Indices: 64281122--64281182 Score: 52
Period size: 9 Copynumber: 6.4 Consensus size: 9
64281112 TTTTTTTCTT
64281122 TTTTTATAA
1 TTTTTATAA
64281131 TTTTTAAATAA
1 TTTTT--ATAA
*
64281142 TTTTTAATAT
1 TTTTT-ATAA
64281152 TTTTTATAA
1 TTTTTATAA
*
64281161 TTTCTA-AA
1 TTTTTATAA
*
64281169 CTTTTTATAG
1 -TTTTTATAA
64281179 TTTT
1 TTTT
64281183 AGATTTAAAT
Statistics
Matches: 43, Mismatches: 5, Indels: 8
0.77 0.09 0.14
Matches are distributed among these distances:
8 2 0.05
9 22 0.51
10 10 0.23
11 9 0.21
ACGTcount: A:0.31, C:0.03, G:0.02, T:0.64
Consensus pattern (9 bp):
TTTTTATAA
Found at i:64281134 original size:10 final size:10
Alignment explanation
Indices: 64281121--64281163 Score: 52
Period size: 10 Copynumber: 4.3 Consensus size: 10
64281111 TTTTTTTTCT
*
64281121 TTTTTTATAA
1 TTTTTAATAA
64281131 TTTTTAAATAA
1 TTTTT-AATAA
64281142 TTTTTAAT-A
1 TTTTTAATAA
*
64281151 TTTTTTATAA
1 TTTTTAATAA
64281161 TTT
1 TTT
64281164 CTAAACTTTT
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
9 8 0.28
10 12 0.41
11 9 0.31
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (10 bp):
TTTTTAATAA
Found at i:64282421 original size:22 final size:22
Alignment explanation
Indices: 64282396--64282437 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
64282386 AAATATTATA
*
64282396 ATATCATGTAATATTATATTTT
1 ATATCATATAATATTATATTTT
* *
64282418 ATATTATATAATGTTATATT
1 ATATCATATAATATTATATT
64282438 AGTATATATT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 17 1.00
ACGTcount: A:0.38, C:0.02, G:0.05, T:0.55
Consensus pattern (22 bp):
ATATCATATAATATTATATTTT
Found at i:64282436 original size:15 final size:15
Alignment explanation
Indices: 64282396--64282453 Score: 50
Period size: 15 Copynumber: 3.9 Consensus size: 15
64282386 AAATATTATA
* *
64282396 ATATCATGTAATATT
1 ATATAATGTTATATT
64282411 ATAT--T-TTATATT
1 ATATAATGTTATATT
64282423 ATATAATGTTATATT
1 ATATAATGTTATATT
*
64282438 AGTATATATTTTATAT
1 A-TATA-ATGTTATAT
64282454 GAAATCATTT
Statistics
Matches: 36, Mismatches: 2, Indels: 8
0.78 0.04 0.17
Matches are distributed among these distances:
12 10 0.28
13 1 0.03
14 1 0.03
15 12 0.33
16 4 0.11
17 8 0.22
ACGTcount: A:0.38, C:0.02, G:0.05, T:0.55
Consensus pattern (15 bp):
ATATAATGTTATATT
Found at i:64282572 original size:16 final size:17
Alignment explanation
Indices: 64282553--64282585 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
64282543 TAGTTTATAG
64282553 ATTTTA-ATAATTATTA
1 ATTTTATATAATTATTA
*
64282569 ATTTTATATATTTATTA
1 ATTTTATATAATTATTA
64282586 TACATATATA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 6 0.40
17 9 0.60
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (17 bp):
ATTTTATATAATTATTA
Found at i:64283367 original size:18 final size:18
Alignment explanation
Indices: 64283344--64283382 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 18
64283334 TTATAAAGAA
64283344 AAACTTACGTCTTTACAT
1 AAACTTACGTCTTTACAT
** *
64283362 AAACTTGTGTTTTTACAT
1 AAACTTACGTCTTTACAT
64283380 AAA
1 AAA
64283383 AAATTAATTT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.36, C:0.15, G:0.08, T:0.41
Consensus pattern (18 bp):
AAACTTACGTCTTTACAT
Found at i:64284105 original size:5 final size:6
Alignment explanation
Indices: 64284092--64284127 Score: 54
Period size: 6 Copynumber: 5.7 Consensus size: 6
64284082 ATAATTTAAT
64284092 AAATAA AAATAA AAATCTAA AAATAA AAATAA AAAT
1 AAATAA AAATAA AAA--TAA AAATAA AAATAA AAAT
64284128 TTTACAAATA
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
6 22 0.79
8 6 0.21
ACGTcount: A:0.78, C:0.03, G:0.00, T:0.19
Consensus pattern (6 bp):
AAATAA
Found at i:64284114 original size:14 final size:14
Alignment explanation
Indices: 64284095--64284121 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
64284085 ATTTAATAAA
64284095 TAAAAATAAAAATC
1 TAAAAATAAAAATC
64284109 TAAAAATAAAAAT
1 TAAAAATAAAAAT
64284122 AAAAATTTTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.74, C:0.04, G:0.00, T:0.22
Consensus pattern (14 bp):
TAAAAATAAAAATC
Found at i:64284126 original size:21 final size:22
Alignment explanation
Indices: 64284069--64284126 Score: 66
Period size: 20 Copynumber: 2.6 Consensus size: 22
64284059 CAACCCAATC
*
64284069 ATAAAAATTACAAATAATTTAATAA
1 ATAAAAA-TA-AAA-AATCTAATAA
64284094 ATAAAAAT-AAAAATCTAA-AA
1 ATAAAAATAAAAAATCTAATAA
64284114 ATAAAAATAAAAA
1 ATAAAAATAAAAA
64284127 TTTTACAAAT
Statistics
Matches: 31, Mismatches: 1, Indels: 6
0.82 0.03 0.16
Matches are distributed among these distances:
20 10 0.32
21 10 0.32
22 3 0.10
24 1 0.03
25 7 0.23
ACGTcount: A:0.72, C:0.03, G:0.00, T:0.24
Consensus pattern (22 bp):
ATAAAAATAAAAAATCTAATAA
Found at i:64284148 original size:9 final size:9
Alignment explanation
Indices: 64284136--64284212 Score: 93
Period size: 9 Copynumber: 8.6 Consensus size: 9
64284126 ATTTTACAAA
*
64284136 TAATTCCGT
1 TAATTCGGT
*
64284145 TAATTTGGT
1 TAATTCGGT
64284154 TAATTCGGT
1 TAATTCGGT
* *
64284163 TAATTTGGA
1 TAATTCGGT
64284172 TAATTCAGG-
1 TAATTC-GGT
*
64284181 TAATTCAGT
1 TAATTCGGT
64284190 TAATTCGGT
1 TAATTCGGT
64284199 TAATTCGGT
1 TAATTCGGT
64284208 TAATT
1 TAATT
64284213 TTATACTTAT
Statistics
Matches: 58, Mismatches: 8, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
8 1 0.02
9 55 0.95
10 2 0.03
ACGTcount: A:0.27, C:0.09, G:0.18, T:0.45
Consensus pattern (9 bp):
TAATTCGGT
Found at i:64285320 original size:16 final size:16
Alignment explanation
Indices: 64285296--64285329 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
64285286 ATTTCATTAA
64285296 ATAAAAAATTAAATAT
1 ATAAAAAATTAAATAT
*
64285312 ATAATAAATTAAATAT
1 ATAAAAAATTAAATAT
64285328 AT
1 AT
64285330 TTAAAAACAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (16 bp):
ATAAAAAATTAAATAT
Found at i:64287406 original size:115 final size:115
Alignment explanation
Indices: 64287268--64287645 Score: 580
Period size: 115 Copynumber: 3.3 Consensus size: 115
64287258 CCAGATTGAT
* *
64287268 TCTGGTTTAGATTATCATATTTTTTATTTGGAGTATCTAGGATTTGGATTTGTTAAGCTTAGGCG
1 TCTGGTTTAGATTATCATATTTTTTATTTGAAGTATCTTGGATTTGGATTTGTTAAGCTTAGGCG
64287333 CTTTCGTGTTTAGAATTTTTGGGATTTAATTTTTTCATATCCGGACTGGG
66 CTTTCGTGTTTAGAATTTTTGGGATTTAATTTTTTCATATCCGGACTGGG
* *
64287383 TCTAGTTTAGATTATCAAATTTTTTATTTGAAGTATCTTGGATTTGGATTTGTTAAGCTTAGGCG
1 TCTGGTTTAGATTATCATATTTTTTATTTGAAGTATCTTGGATTTGGATTTGTTAAGCTTAGGCG
*
64287448 CTTTCGTATTTAGAATTTTTGGGATTTAA-TTTTTCATATCCGGACTGGG
66 CTTTCGTGTTTAGAATTTTTGGGATTTAATTTTTTCATATCCGGACTGGG
* * * * *
64287497 TCTGGTTTAGATTATCATACTTCTTATTTGAAGTTTCTTGGATTTGGATTTGTTAAACTTAAGCG
1 TCTGGTTTAGATTATCATATTTTTTATTTGAAGTATCTTGGATTTGGATTTGTTAAGCTTAGGCG
* * * * *
64287562 CTTCCATGTTTAGAATTTTTGGGATTTAATTTTTTAATA-CGCAGACTGGT
66 CTTTCGTGTTTAGAATTTTTGGGATTTAATTTTTTCATATC-CGGACTGGG
* *
64287612 TTTGGTTTAGAATATCATATTTTTTATTTGAAGT
1 TCTGGTTTAGATTATCATATTTTTTATTTGAAGT
64287646 TTTCTGAATG
Statistics
Matches: 239, Mismatches: 22, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
114 105 0.44
115 134 0.56
ACGTcount: A:0.22, C:0.10, G:0.20, T:0.48
Consensus pattern (115 bp):
TCTGGTTTAGATTATCATATTTTTTATTTGAAGTATCTTGGATTTGGATTTGTTAAGCTTAGGCG
CTTTCGTGTTTAGAATTTTTGGGATTTAATTTTTTCATATCCGGACTGGG
Found at i:64287689 original size:229 final size:229
Alignment explanation
Indices: 64287268--64287696 Score: 576
Period size: 229 Copynumber: 1.9 Consensus size: 229
64287258 CCAGATTGAT
* * * * *
64287268 TCTGGTTTAGATTATCATATTTTTTATTTGGAGTATCTAGGATTTGGATTTGTTAAGCTTAGGCG
1 TCTGGTTTAGATTATCATACTTCTTATTTGAAGTATCTAGGATTTGGATTTGTTAAACTTAAGCG
* * * * *
64287333 CTTTCGTGTTTAGAATTTTTGGGATTTAATTTTTTCATATCCGGACTGGGTCTAGTTTAGATTAT
66 CTTCCATGTTTAGAATTTTTGGGATTTAATTTTTTAATATCCAGACTGGGTCTAGTTTAGAATAT
* * * *
64287398 CAAATTTTTTATTTGAAGTATCTTGGATTTGGATTTGTTAAGCTTAGGCGCTTTCGTATTTAGAA
131 CAAATTTTTTATTTGAAGTATCTTGAATGTGGATTTGTTAAGCTCAGGCGCTTTCATATTTAGAA
64287463 TTTTTGGGATTTAATTTTTCATATCCGGACTGGG
196 TTTTTGGGATTTAATTTTTCATATCCGGACTGGG
* *
64287497 TCTGGTTTAGATTATCATACTTCTTATTTGAAGTTTCTTGGATTTGGATTTGTTAAACTTAAGCG
1 TCTGGTTTAGATTATCATACTTCTTATTTGAAGTATCTAGGATTTGGATTTGTTAAACTTAAGCG
* * *
64287562 CTTCCATGTTTAGAATTTTTGGGATTTAATTTTTTAATA-CGCAGACTGGTTTTGGTTTAGAATA
66 CTTCCATGTTTAGAATTTTTGGGATTTAATTTTTTAATATC-CAGACTGGGTCTAGTTTAGAATA
* * * * **
64287626 TCATATTTTTTATTTGAAGT-TTTCTGAATGTGGACTTTTTTAATCTCAGGTTC-TTCATATTTA
130 TCAAATTTTTTATTTGAAGTATCT-TGAATGTGGA-TTTGTTAAGCTCAGGCGCTTTCATATTTA
*
64287689 GATTTTTT
193 GAATTTTT
64287697 AGTTTTGAAT
Statistics
Matches: 171, Mismatches: 26, Indels: 6
0.84 0.13 0.03
Matches are distributed among these distances:
228 3 0.02
229 155 0.91
230 13 0.08
ACGTcount: A:0.22, C:0.10, G:0.19, T:0.49
Consensus pattern (229 bp):
TCTGGTTTAGATTATCATACTTCTTATTTGAAGTATCTAGGATTTGGATTTGTTAAACTTAAGCG
CTTCCATGTTTAGAATTTTTGGGATTTAATTTTTTAATATCCAGACTGGGTCTAGTTTAGAATAT
CAAATTTTTTATTTGAAGTATCTTGAATGTGGATTTGTTAAGCTCAGGCGCTTTCATATTTAGAA
TTTTTGGGATTTAATTTTTCATATCCGGACTGGG
Found at i:64291461 original size:34 final size:34
Alignment explanation
Indices: 64291413--64291483 Score: 106
Period size: 34 Copynumber: 2.1 Consensus size: 34
64291403 GTTAACTTAG
* *
64291413 TGTTTTGCAAATGATGAAATATTCTACGGTTGAA
1 TGTTGTGCAAATGATGAAATATTCTACGGCTGAA
* *
64291447 TGTTGTGCAAATGATGAATTATTCTATGGCTGAA
1 TGTTGTGCAAATGATGAAATATTCTACGGCTGAA
64291481 TGT
1 TGT
64291484 AGATGTATCG
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
34 33 1.00
ACGTcount: A:0.30, C:0.08, G:0.23, T:0.39
Consensus pattern (34 bp):
TGTTGTGCAAATGATGAAATATTCTACGGCTGAA
Found at i:64291861 original size:22 final size:22
Alignment explanation
Indices: 64291818--64291867 Score: 66
Period size: 22 Copynumber: 2.3 Consensus size: 22
64291808 GTGCTTATGG
*
64291818 ATATGAAAGCCCTTTATAGGTA
1 ATATGAAAGCCCTTGATAGGTA
*
64291840 GTATGAAAGCCCTTGA-AGGGTA
1 ATATGAAAGCCCTTGATA-GGTA
64291862 ATATGA
1 ATATGA
64291868 GATTTTGCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
21 1 0.04
22 23 0.96
ACGTcount: A:0.36, C:0.12, G:0.24, T:0.28
Consensus pattern (22 bp):
ATATGAAAGCCCTTGATAGGTA
Found at i:64294123 original size:36 final size:38
Alignment explanation
Indices: 64294048--64294130 Score: 134
Period size: 38 Copynumber: 2.2 Consensus size: 38
64294038 AATTGTTTTT
*
64294048 CAGAATGTTTTCGGTTGAGGAAAATCCTCTGACTGTTG
1 CAGAATATTTTCGGTTGAGGAAAATCCTCTGACTGTTG
*
64294086 CAGAATATTTTTGGTTGAGGAAAAT-C-CTGACTGTTG
1 CAGAATATTTTCGGTTGAGGAAAATCCTCTGACTGTTG
64294122 CAGAATATT
1 CAGAATATT
64294131 AATCCTCTAC
Statistics
Matches: 43, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
36 19 0.44
37 1 0.02
38 23 0.53
ACGTcount: A:0.28, C:0.13, G:0.24, T:0.35
Consensus pattern (38 bp):
CAGAATATTTTCGGTTGAGGAAAATCCTCTGACTGTTG
Found at i:64296305 original size:29 final size:26
Alignment explanation
Indices: 64296273--64296325 Score: 70
Period size: 29 Copynumber: 1.9 Consensus size: 26
64296263 CAACGTCAAT
*
64296273 AAATAATTCAAAAGTTATAAAATAAATTA
1 AAATAAATCAAAA-TTA-AAAA-AAATTA
64296302 AAATAAATCAAAATTAAAAAAAAT
1 AAATAAATCAAAATTAAAAAAAAT
64296326 ATGAAAAAGT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
26 4 0.17
27 4 0.17
28 3 0.13
29 12 0.52
ACGTcount: A:0.68, C:0.04, G:0.02, T:0.26
Consensus pattern (26 bp):
AAATAAATCAAAATTAAAAAAAATTA
Found at i:64298390 original size:23 final size:23
Alignment explanation
Indices: 64298364--64298419 Score: 60
Period size: 23 Copynumber: 2.4 Consensus size: 23
64298354 TATTTATATT
64298364 ATTTTTA-ATTTAATATTTAATAA
1 ATTTTTATATTT-ATATTTAATAA
* * *
64298387 ATTTATATATTTTTATTTATTAA
1 ATTTTTATATTTATATTTAATAA
*
64298410 AATTTTATAT
1 ATTTTTATAT
64298420 ATAGTCATCT
Statistics
Matches: 27, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
23 23 0.85
24 4 0.15
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (23 bp):
ATTTTTATATTTATATTTAATAA
Found at i:64300038 original size:13 final size:12
Alignment explanation
Indices: 64299982--64300042 Score: 56
Period size: 13 Copynumber: 5.2 Consensus size: 12
64299972 ACCTATTGAA
*
64299982 ATAT-TACATAA
1 ATATATACATAT
64299993 ATATATAC-T-T
1 ATATATACATAT
* *
64300003 ATATATACTAGAG
1 ATATATAC-ATAT
64300016 ATATATACATAT
1 ATATATACATAT
64300028 ATATATAACATAT
1 ATATAT-ACATAT
64300041 AT
1 AT
64300043 TAAGATTAAC
Statistics
Matches: 40, Mismatches: 5, Indels: 8
0.75 0.09 0.15
Matches are distributed among these distances:
10 8 0.20
11 5 0.12
12 11 0.28
13 16 0.40
ACGTcount: A:0.49, C:0.08, G:0.03, T:0.39
Consensus pattern (12 bp):
ATATATACATAT
Found at i:64300040 original size:21 final size:20
Alignment explanation
Indices: 64299989--64300042 Score: 63
Period size: 23 Copynumber: 2.5 Consensus size: 20
64299979 GAAATATTAC
*
64299989 ATAAATATATACTTATATAT
1 ATAAATATATACATATATAT
64300009 ACTAGAGATATATACATATATAT
1 A-TA-A-ATATATACATATATAT
64300032 ATAACATATAT
1 ATAA-ATATAT
64300043 TAAGATTAAC
Statistics
Matches: 29, Mismatches: 2, Indels: 5
0.81 0.06 0.14
Matches are distributed among these distances:
20 1 0.03
21 9 0.31
22 3 0.10
23 16 0.55
ACGTcount: A:0.50, C:0.07, G:0.04, T:0.39
Consensus pattern (20 bp):
ATAAATATATACATATATAT
Found at i:64316753 original size:21 final size:21
Alignment explanation
Indices: 64316729--64316768 Score: 64
Period size: 21 Copynumber: 1.9 Consensus size: 21
64316719 GGAATAAATC
64316729 GAAAAC-TTAGAAAATTTTCCA
1 GAAAACATT-GAAAATTTTCCA
64316750 GAAAACATTGAAAATTTTC
1 GAAAACATTGAAAATTTTC
64316769 AACACTGTAG
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
21 16 0.89
22 2 0.11
ACGTcount: A:0.47, C:0.12, G:0.10, T:0.30
Consensus pattern (21 bp):
GAAAACATTGAAAATTTTCCA
Found at i:64318203 original size:25 final size:24
Alignment explanation
Indices: 64318174--64318253 Score: 74
Period size: 25 Copynumber: 3.2 Consensus size: 24
64318164 TCCTGTACAT
64318174 GTATGGTCATACGAGCTGTGAATCG
1 GTATGGTCATACGAGCTGT-AATCG
* *
64318199 ATATGGTTACT-CGAGCTGTAGATCG
1 GTATGGTCA-TACGAGCTGTA-ATCG
*
64318224 GTATGCTC-TCACGAGCTGTAAATCG
1 GTATGGTCAT-ACGAGCTGT-AATCG
64318249 GTATG
1 GTATG
64318254 CTTTCATGAG
Statistics
Matches: 45, Mismatches: 5, Indels: 10
0.75 0.08 0.17
Matches are distributed among these distances:
23 1 0.02
24 1 0.02
25 41 0.91
26 2 0.04
ACGTcount: A:0.24, C:0.17, G:0.29, T:0.30
Consensus pattern (24 bp):
GTATGGTCATACGAGCTGTAATCG
Found at i:64318254 original size:25 final size:24
Alignment explanation
Indices: 64318184--64318267 Score: 87
Period size: 25 Copynumber: 3.4 Consensus size: 24
64318174 GTATGGTCAT
* * *
64318184 ACGAGCTGTGAATCGATATGGTTAC
1 ACGAGCTGTAAATCGGTATGCTT-C
* *
64318209 TCGAGCTGTAGATCGGTATGCTCTC
1 ACGAGCTGTAAATCGGTATGCT-TC
64318234 ACGAGCTGTAAATCGGTATGCTTTC
1 ACGAGCTGTAAATCGGTATGC-TTC
*
64318259 ATGAGCTGT
1 ACGAGCTGT
64318268 GGGTCAGAAC
Statistics
Matches: 49, Mismatches: 8, Indels: 4
0.80 0.13 0.07
Matches are distributed among these distances:
25 47 0.96
26 2 0.04
ACGTcount: A:0.23, C:0.19, G:0.27, T:0.31
Consensus pattern (24 bp):
ACGAGCTGTAAATCGGTATGCTTC
Found at i:64320071 original size:13 final size:14
Alignment explanation
Indices: 64320042--64320077 Score: 56
Period size: 13 Copynumber: 2.6 Consensus size: 14
64320032 AATTTTTAAT
64320042 AAGATAAAAATATTA
1 AAGA-AAAAATATTA
64320057 AAGAAAAAATA-TA
1 AAGAAAAAATATTA
64320070 AAGAAAAA
1 AAGAAAAA
64320078 GAAAATGAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
13 10 0.48
14 7 0.33
15 4 0.19
ACGTcount: A:0.75, C:0.00, G:0.08, T:0.17
Consensus pattern (14 bp):
AAGAAAAAATATTA
Done.