Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr9
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 91122320
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2661692 characters in sequence are not A, C, G, or T
File 20 of 279
Found at i:6518083 original size:33 final size:33
Alignment explanation
Indices: 6518044--6518120 Score: 138
Period size: 33 Copynumber: 2.4 Consensus size: 33
6518034 AATGATCAAT
6518044 ATAATAATACAAGAATGCAAATAATATGCCACA
1 ATAATAATACAAGAATGCAAATAATATGCCACA
*
6518077 ATAATAACACAAGAATGCAAATAATATGCCACA
1 ATAATAATACAAGAATGCAAATAATATGCCACA
6518110 ATAA-AATACAA
1 ATAATAATACAA
6518121 AGCCTAGTAT
Statistics
Matches: 42, Mismatches: 2, Indels: 1
0.93 0.04 0.02
Matches are distributed among these distances:
32 6 0.14
33 36 0.86
ACGTcount: A:0.57, C:0.16, G:0.08, T:0.19
Consensus pattern (33 bp):
ATAATAATACAAGAATGCAAATAATATGCCACA
Found at i:6537306 original size:25 final size:25
Alignment explanation
Indices: 6537277--6537324 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
6537267 TTATAACATG
* * *
6537277 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
6537302 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
6537325 GTTTATGTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:6537408 original size:11 final size:11
Alignment explanation
Indices: 6537372--6537427 Score: 57
Period size: 11 Copynumber: 5.5 Consensus size: 11
6537362 CATGGTATGT
6537372 ATGATATGCAC
1 ATGATATGCAC
* *
6537383 ATGACATG--T
1 ATGATATGCAC
6537392 ATGATATGCAC
1 ATGATATGCAC
*
6537403 ATGATATG--T
1 ATGATATGCAC
6537412 ATGATATGCAC
1 ATGATATGCAC
6537423 ATGAT
1 ATGAT
6537428 GTAATCATAA
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
9 15 0.43
11 20 0.57
ACGTcount: A:0.36, C:0.12, G:0.20, T:0.32
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:6537427 original size:20 final size:20
Alignment explanation
Indices: 6537362--6537427 Score: 114
Period size: 20 Copynumber: 3.3 Consensus size: 20
6537352 TTTTGATAGG
*
6537362 CATGGTATGTATGATATGCA
1 CATGATATGTATGATATGCA
*
6537382 CATGACATGTATGATATGCA
1 CATGATATGTATGATATGCA
6537402 CATGATATGTATGATATGCA
1 CATGATATGTATGATATGCA
6537422 CATGAT
1 CATGAT
6537428 GTAATCATAA
Statistics
Matches: 43, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 43 1.00
ACGTcount: A:0.33, C:0.12, G:0.21, T:0.33
Consensus pattern (20 bp):
CATGATATGTATGATATGCA
Found at i:6537508 original size:23 final size:23
Alignment explanation
Indices: 6537478--6537572 Score: 147
Period size: 23 Copynumber: 4.1 Consensus size: 23
6537468 AGGAAGTGAA
6537478 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
6537501 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
6537524 AAAGGGCTTATG-CCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
* * *
6537546 AAAAGGGCTTTTGACCCAGTTAGT
1 -AAAGGGCTTATGCCCCAGTTATT
6537570 AAA
1 AAA
6537573 AGAGGCTAGG
Statistics
Matches: 68, Mismatches: 2, Indels: 4
0.92 0.03 0.05
Matches are distributed among these distances:
22 10 0.15
23 49 0.72
24 9 0.13
ACGTcount: A:0.29, C:0.19, G:0.22, T:0.29
Consensus pattern (23 bp):
AAAGGGCTTATGCCCCAGTTATT
Found at i:6537822 original size:31 final size:31
Alignment explanation
Indices: 6537787--6537850 Score: 92
Period size: 31 Copynumber: 2.1 Consensus size: 31
6537777 CGTTTACAGT
*
6537787 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCAGCCCAGTAATATGAAATATGA
** *
6537818 AAAGGCTTCAGCCCAGTGTTGTGAAATATGA
1 AAAGGCTTCAGCCCAGTAATATGAAATATGA
6537849 AA
1 AA
6537851 TATGAAAAGG
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.38, C:0.16, G:0.23, T:0.23
Consensus pattern (31 bp):
AAAGGCTTCAGCCCAGTAATATGAAATATGA
Found at i:6545260 original size:144 final size:144
Alignment explanation
Indices: 6544990--6545317 Score: 374
Period size: 144 Copynumber: 2.3 Consensus size: 144
6544980 AATTGCTGAT
* * * ** * * * * *
6544990 GCCATGTTCCAAACATGGTCTTACACTGGCTTACATGTCGAGGCCAATGCCATGTCCTAGACATG
1 GCCATGTCCCAGACATGGTCTTACACTAGCACACATATCAATGCCGATGCCATGTCCCAGACATG
* * ** * * * *
6545055 GTCTTACACTAGCTCTCGTCTCAATGTTGATGCCATATCCCAGACATGGTTTTTCACTGGCTCTC
66 GTCTTACACTAGCTCTCGACACAATGCCGATACCATATCCCAAACATGGTCTTACACTGGCTCTC
* *
6545120 ATGTTGTGGCCGAT-
131 ATATCGTGGCCG-TC
* *
6545134 GTCATGTCCCAGACATGGTCTTACATTAGCACACATATCAATGCCGATGCCATGTCCCAGACATG
1 GCCATGTCCCAGACATGGTCTTACACTAGCACACATATCAATGCCGATGCCATGTCCCAGACATG
* * * *
6545199 GTCTTACACTGGCTCTC-ACA-ACATCGCCGATACCATGTTCCAAACATGGTCTTACATTGGCTC
66 GTCTTACACTAGCTCTCGACACA-AT-GCCGATACCATATCCCAAACATGGTCTTACACTGGCTC
6545262 TCATATCGTGGCCGTC
129 TCATATCGTGGCCGTC
6545278 GCCATGTCCCAGACATGGTCTTACACTAGCACACATATCA
1 GCCATGTCCCAGACATGGTCTTACACTAGCACACATATCA
6545318 CCTAAATGTC
Statistics
Matches: 153, Mismatches: 28, Indels: 6
0.82 0.15 0.03
Matches are distributed among these distances:
142 1 0.01
143 4 0.03
144 148 0.97
ACGTcount: A:0.23, C:0.29, G:0.19, T:0.28
Consensus pattern (144 bp):
GCCATGTCCCAGACATGGTCTTACACTAGCACACATATCAATGCCGATGCCATGTCCCAGACATG
GTCTTACACTAGCTCTCGACACAATGCCGATACCATATCCCAAACATGGTCTTACACTGGCTCTC
ATATCGTGGCCGTC
Found at i:6545316 original size:48 final size:48
Alignment explanation
Indices: 6544987--6545304 Score: 295
Period size: 48 Copynumber: 6.6 Consensus size: 48
6544977 GTGAATTGCT
* * *
6544987 GATGCCATGTTCCAAACATGGTCTTACACTGGCT-TACATGTCGA-GGCC
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCT-CATATC-ATGGCC
* * * * * **
6545035 AATGCCATGTCCTAGACATGGTCTTACACTAGCTCTCGTCTCAAT-GTT
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATATC-ATGGCC
* * * * **
6545083 GATGCCATATCCCAGACATGGTTTTTCACTGGCTCTCATGTTGTGGCC
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATATCATGGCC
* * * * *
6545131 GATGTCATGTCCCAGACATGGTCTTACATTAGCACACATATCAAT-GCC
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATATC-ATGGCC
* * *
6545179 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCACAACATCGCC
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATATCATGGCC
* * * * *
6545227 GATACCATGTTCCAAACATGGTCTTACATTGGCTCTCATATCGTGGCC
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATATCATGGCC
6545275 G-TCGCCATGTCCCAGACATGGTCTTACACT
1 GAT-GCCATGTCCCAGACATGGTCTTACACT
6545305 AGCACACATA
Statistics
Matches: 212, Mismatches: 52, Indels: 12
0.77 0.19 0.04
Matches are distributed among these distances:
47 4 0.02
48 206 0.97
49 2 0.01
ACGTcount: A:0.23, C:0.29, G:0.19, T:0.29
Consensus pattern (48 bp):
GATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATATCATGGCC
Found at i:6546697 original size:37 final size:37
Alignment explanation
Indices: 6546656--6546726 Score: 97
Period size: 37 Copynumber: 1.9 Consensus size: 37
6546646 TCGACTTTTC
* * *
6546656 TCTTTTCCTTAATCAGTTCCTTAGCTTTACAAGCCCG
1 TCTTTCCCTTAATCAGTTCCTCAACTTTACAAGCCCG
* *
6546693 TCTTTCCCTTAGTTAGTTCCTCAACTTTACAAGC
1 TCTTTCCCTTAATCAGTTCCTCAACTTTACAAGC
6546727 TCGATCAACG
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
37 29 1.00
ACGTcount: A:0.20, C:0.30, G:0.10, T:0.41
Consensus pattern (37 bp):
TCTTTCCCTTAATCAGTTCCTCAACTTTACAAGCCCG
Found at i:6549274 original size:39 final size:40
Alignment explanation
Indices: 6549178--6549400 Score: 210
Period size: 39 Copynumber: 5.6 Consensus size: 40
6549168 CGAATGATGT
* * *
6549178 CCGGGCTAAGTCCCGAAAGC-TTTGTGCTAAGTGACT-ATA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAATA
* * *
6549217 TCCGGACTAAGAT-CCGAAGGCATTTGTACGAGTTACTAATT
1 -CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAATA
* *
6549258 TCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATA
* *
6549297 CCGGGCTAAG-CCCGAAGGCATTGGCGCGAGTTACTAA-A
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATA
* * *
6549335 TCTGGGTTAAGTCCCGAAAAG-ATTTGTGCGAGTTACT-ATAA
1 -CCGGGCTAAGTCCCG-AAGGCATTTGTGCGAGTTACTAAT-A
*
6549376 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
6549401 AACGAGTGCT
Statistics
Matches: 151, Mismatches: 22, Indels: 20
0.78 0.11 0.10
Matches are distributed among these distances:
39 73 0.48
40 65 0.43
41 13 0.09
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATA
Found at i:6549306 original size:79 final size:78
Alignment explanation
Indices: 6549179--6549407 Score: 250
Period size: 79 Copynumber: 2.9 Consensus size: 78
6549169 GAATGATGTC
* * *
6549179 CGGGCTAAGTCCCGAAAGC-TTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCATTTG
1 CGGGCTAAGTCCCGAAAGCATTTGTGC-GAGTTACTATATCCGGGCTAAG-TCCGAAGGCATTTG
* *
6549243 TACGAGTTACTAATTT
64 AACGAGTTACTAA-AT
* * * *
6549259 CGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTA-ATTCCGGGCTAAGCCCGAAGGCATTGGC
1 CGGGCTAAGTCCCGAAAGCATTTGTGCGAGTTACTATA-TCCGGGCTAAGTCCGAAGGCATTTGA
*
6549322 GCGAGTTACTAAAT
65 ACGAGTTACTAAAT
* * *
6549336 CTGGGTTAAGTCCCGAAAAG-ATTTGTGCGAGTTACTATAACCGGGCTATGTCCCGAAGGCATTT
1 C-GGGCTAAGTCCCG-AAAGCATTTGTGCGAGTTACTATATCCGGGCTAAGT-CCGAAGGCATTT
6549400 GAACGAGT
63 GAACGAGT
6549408 GCTATATCCG
Statistics
Matches: 125, Mismatches: 17, Indels: 14
0.80 0.11 0.09
Matches are distributed among these distances:
77 2 0.02
78 31 0.25
79 55 0.44
80 37 0.30
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (78 bp):
CGGGCTAAGTCCCGAAAGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCGAAGGCATTTGAA
CGAGTTACTAAAT
Found at i:6555723 original size:27 final size:28
Alignment explanation
Indices: 6555693--6555746 Score: 67
Period size: 28 Copynumber: 2.0 Consensus size: 28
6555683 TTGATGAATT
*
6555693 TGAGTAATTT-GGG-CTAAATTGTGAAAA
1 TGAG-AATTTGGGGACTAAAATGTGAAAA
*
6555720 TGAGATTTTGGGGACTAAAATGTGAAA
1 TGAGAATTTGGGGACTAAAATGTGAAA
6555747 TAAATGAAAT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
26 4 0.17
27 7 0.30
28 12 0.52
ACGTcount: A:0.37, C:0.04, G:0.28, T:0.31
Consensus pattern (28 bp):
TGAGAATTTGGGGACTAAAATGTGAAAA
Found at i:6557552 original size:53 final size:53
Alignment explanation
Indices: 6557466--6557671 Score: 180
Period size: 53 Copynumber: 3.8 Consensus size: 53
6557456 TTTCTTTTTA
* * * *
6557466 AACTTACCATTGCCATGTCTTGACATGGCCTTACGTGGTATCCTTGCCTTATG
1 AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATG
* * * * * *
6557519 AACTCACCATTTCCATGCCTTGGCATGGTCTTACATGGGATCTTTGCCTTATCG
1 AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTAT-G
** * * * * *
6557573 TAGTTTATCAATGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTGA-A
1 -AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTT-ATG
* * * **
6557627 AACTTACCAATTCCATGCATTGGCATGGTCTTATTTGGTATCCTT
1 AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTT
6557672 AAACCCTAAT
Statistics
Matches: 118, Mismatches: 32, Indels: 6
0.76 0.21 0.04
Matches are distributed among these distances:
53 78 0.66
54 1 0.01
55 38 0.32
56 1 0.01
ACGTcount: A:0.20, C:0.24, G:0.17, T:0.38
Consensus pattern (53 bp):
AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATG
Found at i:6559028 original size:47 final size:46
Alignment explanation
Indices: 6558951--6559077 Score: 128
Period size: 47 Copynumber: 2.7 Consensus size: 46
6558941 GTGCGAATAA
* * * * * *
6558951 TACCTTGATTTGGCTATGGGCAATGATATAGGTATTATGAGAGGAGT
1 TACCTTGATTTGGCTA-CGGCCATGGTATAGGTACTACGAGAGAAGT
* * * *
6558998 TACCTTGATTTGGTTACGAGCCATGGTATAGGTACTCCGGGATAAGT
1 TACCTTGATTTGGCTACG-GCCATGGTATAGGTACTACGAGAGAAGT
*
6559045 TACCTTGATATGGCTACTGGCCATGGTATAGGT
1 TACCTTGATTTGGCTAC-GGCCATGGTATAGGT
6559078 GCTTATCAAA
Statistics
Matches: 66, Mismatches: 12, Indels: 4
0.80 0.15 0.05
Matches are distributed among these distances:
46 1 0.02
47 64 0.97
48 1 0.02
ACGTcount: A:0.24, C:0.14, G:0.28, T:0.33
Consensus pattern (46 bp):
TACCTTGATTTGGCTACGGCCATGGTATAGGTACTACGAGAGAAGT
Found at i:6564138 original size:49 final size:49
Alignment explanation
Indices: 6564066--6564310 Score: 319
Period size: 49 Copynumber: 4.9 Consensus size: 49
6564056 TAGCCGAAGC
* * *
6564066 TATCTGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAAT
1 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGACCAAT
* *
6564115 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAAC
1 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGACC-AAT
* * * * *
6564165 CATCTGATACACGTAGTAGCCTGGACTTAGTACTACACACGTGATCAAAGT
1 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGA-CCAA-T
* ** * *
6564216 TATCAGGTATGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAAT
1 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGACCAAT
*
6564265 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACC
1 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGACC
6564311 TCACAATAGC
Statistics
Matches: 167, Mismatches: 26, Indels: 6
0.84 0.13 0.03
Matches are distributed among these distances:
49 83 0.50
50 48 0.29
51 36 0.22
ACGTcount: A:0.29, C:0.26, G:0.19, T:0.26
Consensus pattern (49 bp):
TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGACCAAT
Found at i:6569167 original size:54 final size:54
Alignment explanation
Indices: 6569104--6569213 Score: 202
Period size: 54 Copynumber: 2.0 Consensus size: 54
6569094 CCTATTTTCA
**
6569104 CACGGCCGTATCGCACGGTCGTGTTTCTGTCCGTGTTGGTCACACGGCCTTAAG
1 CACGGCCGTATCGCACGGTCGTGTTTCCATCCGTGTTGGTCACACGGCCTTAAG
6569158 CACGGCCGTATCGCACGGTCGTGTTTCCATCCGTGTTGGTCACACGGCCTTAAG
1 CACGGCCGTATCGCACGGTCGTGTTTCCATCCGTGTTGGTCACACGGCCTTAAG
6569212 CA
1 CA
6569214 GGGCTGTGTG
Statistics
Matches: 54, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
54 54 1.00
ACGTcount: A:0.15, C:0.31, G:0.28, T:0.26
Consensus pattern (54 bp):
CACGGCCGTATCGCACGGTCGTGTTTCCATCCGTGTTGGTCACACGGCCTTAAG
Found at i:6575454 original size:39 final size:40
Alignment explanation
Indices: 6575409--6575580 Score: 211
Period size: 40 Copynumber: 4.3 Consensus size: 40
6575399 GCTCCTCGTT
* * *
6575409 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
*
6575449 C-AATGCCTTCGGGACATAACCCGGATTTAATAACTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
* * *
6575488 CGAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
* * * * * *
6575528 CAAAGGCCTTCGGGGCTTAACCCGGAATTCGTATCTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
*
6575568 CAAAGGCCTTCGG
1 CAAATGCCTTCGG
6575581 ATCTTAGTCC
Statistics
Matches: 119, Mismatches: 12, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
39 35 0.29
40 84 0.71
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
Found at i:6575509 original size:40 final size:39
Alignment explanation
Indices: 6575411--6575633 Score: 205
Period size: 40 Copynumber: 5.6 Consensus size: 39
6575401 TCCTCGTTCA
* * * *
6575411 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC
1 AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
* *
6575450 AATGCCTTCGGGACATAACCCGGATTTAATAACTCGCAC
1 AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
*
6575489 GAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCAC
1 -AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
* * * * *
6575529 AAAGGCCTTCGGGGCTTAACCCGGAATTCGTATCTCGCAC
1 -AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
* ** * * * *
6575569 AAAGGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCAC
1 -AATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCAC
* *
6575610 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
6575634 CAGCATTCAA
Statistics
Matches: 156, Mismatches: 24, Indels: 7
0.83 0.13 0.04
Matches are distributed among these distances:
39 37 0.24
40 111 0.71
41 8 0.05
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.25
Consensus pattern (39 bp):
AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
Found at i:6575642 original size:41 final size:41
Alignment explanation
Indices: 6575565--6575642 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
6575555 TTCGTATCTC
* * *
6575565 GCACAAAGGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAAGGCCTTCGGATCTTAGCCCGGACACATTCACTTA
6575606 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAAGGCCTTC-GGATCTTAGCCCGGACA-CATTCA
6575643 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.23
Consensus pattern (41 bp):
GCACAAAGGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:6583415 original size:40 final size:40
Alignment explanation
Indices: 6583317--6583579 Score: 309
Period size: 40 Copynumber: 6.6 Consensus size: 40
6583307 TCCTCGTTCA
* * * ** *
6583317 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
*
6583356 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
6583396 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
6583436 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
** * *
6583476 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
* * * * *
6583516 AAGGCCTTC-GGATCTTAATCCGGATATATTC-ACTTAGCAC-
1 AATGCCTTCGGGA-CTTAACCCGGATTTA-ACAAC-TCGCACG
* *
6583556 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
6583580 CAGCATTCAA
Statistics
Matches: 199, Mismatches: 20, Indels: 9
0.87 0.09 0.04
Matches are distributed among these distances:
39 37 0.19
40 154 0.77
41 8 0.04
ACGTcount: A:0.27, C:0.29, G:0.21, T:0.24
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
Found at i:6600133 original size:40 final size:40
Alignment explanation
Indices: 6600056--6600307 Score: 280
Period size: 40 Copynumber: 6.3 Consensus size: 40
6600046 GAATCACATA
* * * *
6600056 CCTTCGGAATTTAA-CCGGATATAGCT-ACTCGCTCAAATG
1 CCTTCGGGACTTAACCCGGATTTAG-TAACTCGCACAAATG
* * *
6600095 CCTTTGGGACATAGCCCGG-TTATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAACCCGGATT-TAGTAACTCGCACAAATG
6600135 CCTTCGGGACTTAACCCGGATTTAGTAACTCGCACAAATG
1 CCTTCGGGACTTAACCCGGATTTAGTAACTCGCACAAATG
*
6600175 CCTTCGGGACTTAACCCGGATTTAGTAACTCGCACCAATG
1 CCTTCGGGACTTAACCCGGATTTAGTAACTCGCACAAATG
* *
6600215 CCTTCGGG-CTTAGCCCGGAATTAGTAACTCGCACAAATG
1 CCTTCGGGACTTAACCCGGATTTAGTAACTCGCACAAATG
** * * * * *
6600254 CCTTC-GGATCTTAGTCCAGATATAGTCACTTAGCACAAAAG
1 CCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCACAAATG
6600295 CCTTCGGGACTTA
1 CCTTCGGGACTTA
6600308 GCCCAGATAT
Statistics
Matches: 184, Mismatches: 21, Indels: 14
0.84 0.10 0.06
Matches are distributed among these distances:
38 2 0.01
39 44 0.24
40 115 0.62
41 20 0.11
42 3 0.02
ACGTcount: A:0.27, C:0.27, G:0.20, T:0.26
Consensus pattern (40 bp):
CCTTCGGGACTTAACCCGGATTTAGTAACTCGCACAAATG
Found at i:6608651 original size:114 final size:114
Alignment explanation
Indices: 6608527--6608979 Score: 897
Period size: 114 Copynumber: 4.0 Consensus size: 114
6608517 AAATTTTAAT
6608527 TTATTTTGTAGGAACTTTTCAAGGAGATGTTTTACAATTCTTAAGACGATGGGAAGAATCAGAAG
1 TTATTTTGTAGGAACTTTTCAAGGAGATGTTTTACAATTCTTAAGACGATGGGAAGAATCAGAAG
6608592 TAGGAAAAGTCCAAAAAGGACAACTTATTAATCAAATAGGTACTCCAAA
66 TAGGAAAAGTCCAAAAAGGACAACTTATTAATCAAATAGGTACTCCAAA
6608641 TTATTTTGTAGGAACTTTTCAAGGAGATGTTTTACAATTCTTAAGACGATGGGAAGAATCAGAAG
1 TTATTTTGTAGGAACTTTTCAAGGAGATGTTTTACAATTCTTAAGACGATGGGAAGAATCAGAAG
6608706 TAGGAAAAGTCCAAAAAGGACAACTTATTAATCAAATAGGTACTCCAAA
66 TAGGAAAAGTCCAAAAAGGACAACTTATTAATCAAATAGGTACTCCAAA
6608755 TTATTTTGTAGGAACTTTTCAAGGAGATGTTTTACAATTCTTAAGACGATGGGAAGAATCAGAAG
1 TTATTTTGTAGGAACTTTTCAAGGAGATGTTTTACAATTCTTAAGACGATGGGAAGAATCAGAAG
6608820 TAGGAAAAGTCCAAAAAGGACAACTTATTAATCAAATAGGTACTCCAAA
66 TAGGAAAAGTCCAAAAAGGACAACTTATTAATCAAATAGGTACTCCAAA
6608869 TTATTTTGTAGGAACTTTTCAAGGAGATGTTTTACAATTCTTAAGACGATGGGAAGAATCAGAAG
1 TTATTTTGTAGGAACTTTTCAAGGAGATGTTTTACAATTCTTAAGACGATGGGAAGAATCAGAAG
*
6608934 TAGGAAAAGTCCAAAAAGGACAACTTATTAATCAAATAAGTACTCC
66 TAGGAAAAGTCCAAAAAGGACAACTTATTAATCAAATAGGTACTCC
6608980 TAAAGATCTT
Statistics
Matches: 338, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
114 338 1.00
ACGTcount: A:0.40, C:0.12, G:0.19, T:0.28
Consensus pattern (114 bp):
TTATTTTGTAGGAACTTTTCAAGGAGATGTTTTACAATTCTTAAGACGATGGGAAGAATCAGAAG
TAGGAAAAGTCCAAAAAGGACAACTTATTAATCAAATAGGTACTCCAAA
Found at i:6611200 original size:42 final size:42
Alignment explanation
Indices: 6611140--6611342 Score: 203
Period size: 42 Copynumber: 4.7 Consensus size: 42
6611130 CGTTTTCTCG
** * *
6611140 ATGCCATAGTTCAACTATGGTCTTACACATCTTCATGTAATA
1 ATGCCATAGCCCAGCTATGGTCTTACACATCTTCATATAATA
* * *
6611182 ATGCCATAGCCCAGCTATGATCTTACACATATTCATAT-ATCG
1 ATGCCATAGCCCAGCTATGGTCTTACACATCTTCATATAAT-A
* * *
6611224 ATGCCATAGCCCAACTATGGTCTTACACATCTTCACATAATG
1 ATGCCATAGCCCAGCTATGGTCTTACACATCTTCATATAATA
* *
6611266 ATGCCATAGCGCAGCTATGGTCTTACACGTAATC-ACATATCACATA
1 ATGCCATAGCCCAGCTATGGTCTTACAC---ATCTTCATAT-A-ATA
6611312 TTGATGCCATAGCCCAGCTATGGTCTTACAC
1 ---ATGCCATAGCCCAGCTATGGTCTTACAC
6611343 GAATCACATA
Statistics
Matches: 134, Mismatches: 17, Indels: 13
0.82 0.10 0.08
Matches are distributed among these distances:
41 2 0.01
42 93 0.69
43 2 0.01
44 4 0.03
45 4 0.03
46 2 0.01
49 27 0.20
ACGTcount: A:0.30, C:0.26, G:0.14, T:0.30
Consensus pattern (42 bp):
ATGCCATAGCCCAGCTATGGTCTTACACATCTTCATATAATA
Found at i:6611281 original size:84 final size:87
Alignment explanation
Indices: 6611137--6611342 Score: 265
Period size: 84 Copynumber: 2.4 Consensus size: 87
6611127 CTTCGTTTTC
** **
6611137 TCGATGCCATAGTTCAACTATGGTCTTACACATCTTCATGTAATAATGCCATAGCCCAGCTATGA
1 TCGATGCCATAGCCCAACTATGGTCTTACACATCTTCACATAATAATGCCATAGCCCAGCTATGA
*
6611202 TCTTACAC-AT-AT-TCATATA
66 TCTTACACAATCATATCACATA
* * *
6611221 TCGATGCCATAGCCCAACTATGGTCTTACACATCTTCACATAATGATGCCATAGCGCAGCTATGG
1 TCGATGCCATAGCCCAACTATGGTCTTACACATCTTCACATAATAATGCCATAGCCCAGCTATGA
6611286 TCTTACACGTAATCACATATCACATA
66 TCTTACAC--AAT--CATATCACATA
* *
6611312 TTGATGCCATAGCCCAGCTATGGTCTTACAC
1 TCGATGCCATAGCCCAACTATGGTCTTACAC
6611343 GAATCACATA
Statistics
Matches: 105, Mismatches: 10, Indels: 7
0.86 0.08 0.06
Matches are distributed among these distances:
84 66 0.63
87 2 0.02
90 2 0.02
91 35 0.33
ACGTcount: A:0.30, C:0.26, G:0.14, T:0.30
Consensus pattern (87 bp):
TCGATGCCATAGCCCAACTATGGTCTTACACATCTTCACATAATAATGCCATAGCCCAGCTATGA
TCTTACACAATCATATCACATA
Found at i:6611322 original size:49 final size:48
Alignment explanation
Indices: 6611256--6611385 Score: 174
Period size: 49 Copynumber: 2.7 Consensus size: 48
6611246 TTACACATCT
*
6611256 TCACATAATGATGCCATAGCGCAGCTATGGTCTTACACGTAATCACATA
1 TCACATAATGATGCCATAGCCCAGCTATGGTCTTACACG-AATCACATA
*
6611305 TCACATATTGATGCCATAGCCCAGCTATGGTCTTACACGAATCACATA
1 TCACATAATGATGCCATAGCCCAGCTATGGTCTTACACGAATCACATA
* * * **
6611353 TCTC--ACTGATGCCATATCCCAAATATGGTCTTA
1 TCACATAATGATGCCATAGCCCAGCTATGGTCTTA
6611386 TACAGTAGCA
Statistics
Matches: 74, Mismatches: 7, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
46 25 0.34
48 12 0.16
49 37 0.50
ACGTcount: A:0.31, C:0.26, G:0.15, T:0.28
Consensus pattern (48 bp):
TCACATAATGATGCCATAGCCCAGCTATGGTCTTACACGAATCACATA
Found at i:6611380 original size:46 final size:46
Alignment explanation
Indices: 6611264--6611431 Score: 183
Period size: 47 Copynumber: 3.6 Consensus size: 46
6611254 CTTCACATAA
* * * *
6611264 TGATGCCATAGCGCAGCTATGGTCTTACACGTAATCACATATCACATAT
1 TGATGCCATATCCCAGATATGGTCTTACACG-AATCACATATCAC--AC
* * *
6611313 TGATGCCATAGCCCAGCTATGGTCTTACACGAATCACATATCTCAC
1 TGATGCCATATCCCAGATATGGTCTTACACGAATCACATATCACAC
* * * * *
6611359 TGATGCCATATCCCAAATATGGTCTTATACAGTAGCATATATCACAC
1 TGATGCCATATCCCAGATATGGTCTTACAC-GAATCACATATCACAC
*
6611406 CGATGCCATATCCCAGATATGGTCTT
1 TGATGCCATATCCCAGATATGGTCTT
6611432 GTACGGAAAT
Statistics
Matches: 105, Mismatches: 13, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
46 27 0.26
47 36 0.34
48 12 0.11
49 30 0.29
ACGTcount: A:0.30, C:0.26, G:0.15, T:0.29
Consensus pattern (46 bp):
TGATGCCATATCCCAGATATGGTCTTACACGAATCACATATCACAC
Found at i:6611489 original size:31 final size:31
Alignment explanation
Indices: 6611454--6611602 Score: 228
Period size: 31 Copynumber: 4.8 Consensus size: 31
6611444 CTTGTCACTT
*
6611454 GTAGCCGAAGCTACCACTATTCACTGATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
* *
6611485 GTAGCCAGTA-CTACCACTTTTCACTGATCAA
1 GTAGCC-GAAGCTACCACTTTTCACTGATCAG
*
6611516 GTAGCCGGAGCTACCACTTTTCACTGATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
6611547 GTAGCCGAAGCTACCACTTTTCACTGATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
* *
6611578 GTAGCTGAAGCTACCATTTTTCACT
1 GTAGCCGAAGCTACCACTTTTCACT
6611603 TGTCATTTGT
Statistics
Matches: 108, Mismatches: 8, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
30 2 0.02
31 104 0.96
32 2 0.02
ACGTcount: A:0.26, C:0.28, G:0.18, T:0.28
Consensus pattern (31 bp):
GTAGCCGAAGCTACCACTTTTCACTGATCAG
Found at i:6611677 original size:50 final size:51
Alignment explanation
Indices: 6611578--6611761 Score: 248
Period size: 50 Copynumber: 3.6 Consensus size: 51
6611568 CACTGATCAG
* * * * * *
6611578 GTAGCTGAAGCTACCATTTTTCACTTGTCA-TTTGTCATTGATCAGATAAGT
1 GTAGCCGAAGCTATCACTTATCACTTATCACTTT-TCCTTGATCAGATAAGT
*
6611629 TTAGCCGAAGCTATCACTTATCACTT-TCACTTTTCCTTGATCAGATAAGT
1 GTAGCCGAAGCTATCACTTATCACTTATCACTTTTCCTTGATCAGATAAGT
* * *
6611679 GTAGTCGAAGCTATCACTTATCACTT-TCGCTTTTCCTTGATTAGATAAGT
1 GTAGCCGAAGCTATCACTTATCACTTATCACTTTTCCTTGATCAGATAAGT
6611729 GTAGCCGAAGCTATCACTTATCACTTATCACTT
1 GTAGCCGAAGCTATCACTTATCACTTATCACTT
6611762 GTTTCCTGTA
Statistics
Matches: 119, Mismatches: 12, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
50 90 0.76
51 29 0.24
ACGTcount: A:0.26, C:0.22, G:0.15, T:0.38
Consensus pattern (51 bp):
GTAGCCGAAGCTATCACTTATCACTTATCACTTTTCCTTGATCAGATAAGT
Found at i:6614270 original size:13 final size:13
Alignment explanation
Indices: 6614252--6614276 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
6614242 AGAGGTTTCG
6614252 CTCGACCAAGTTT
1 CTCGACCAAGTTT
6614265 CTCGACCAAGTT
1 CTCGACCAAGTT
6614277 GCACCAGTAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.32, G:0.16, T:0.28
Consensus pattern (13 bp):
CTCGACCAAGTTT
Found at i:6618682 original size:28 final size:27
Alignment explanation
Indices: 6618625--6618776 Score: 241
Period size: 27 Copynumber: 5.6 Consensus size: 27
6618615 TAAATTGTGC
*
6618625 AGCACTAAGTGTGCGAATTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
6618652 AGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAG-TTGACTATGT
6618680 AGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
*
6618707 AGCACTAAGTGTGCGAGTATGATTATGT
1 AGCACTAAGTGTGCGAGT-TGACTATGT
* *
6618735 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGTTGACTATGT
*
6618762 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
6618777 GACTTAATAA
Statistics
Matches: 119, Mismatches: 4, Indels: 4
0.94 0.03 0.03
Matches are distributed among these distances:
27 66 0.55
28 53 0.45
ACGTcount: A:0.27, C:0.14, G:0.29, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGTTGACTATGT
Found at i:6618692 original size:55 final size:55
Alignment explanation
Indices: 6618625--6618776 Score: 250
Period size: 55 Copynumber: 2.8 Consensus size: 55
6618615 TAAATTGTGC
* *
6618625 AGCACTAAGTGTGCGAATTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTATGACTATGT
*
6618680 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTATGATTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTATGACTATGT
* * *
6618735 AGCACTAAGTGTGCGAGTTGATTATATAGCACTGAGTGTGCG
1 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCG
6618777 GACTTAATAA
Statistics
Matches: 91, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
55 91 1.00
ACGTcount: A:0.27, C:0.14, G:0.29, T:0.30
Consensus pattern (55 bp):
AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTATGACTATGT
Found at i:6621482 original size:27 final size:27
Alignment explanation
Indices: 6621422--6621521 Score: 130
Period size: 27 Copynumber: 3.7 Consensus size: 27
6621412 GGATATTACA
* *
6621422 ATGTGACAGAGTCACCAGATACAGATA-
1 ATGTGGCAGAGCCACCAGA-ACAGATAT
6621449 ATCGTGGCAGAGCCACCAGAACAGATAT
1 AT-GTGGCAGAGCCACCAGAACAGATAT
*
6621477 ATGTGGCAGAGCCACCAGATCAGATAT
1 ATGTGGCAGAGCCACCAGAACAGATAT
* *
6621504 TTGTGGCATAGCCACCAG
1 ATGTGGCAGAGCCACCAG
6621522 GATGCTTCCT
Statistics
Matches: 66, Mismatches: 5, Indels: 4
0.88 0.07 0.05
Matches are distributed among these distances:
27 49 0.74
28 17 0.26
ACGTcount: A:0.34, C:0.23, G:0.25, T:0.18
Consensus pattern (27 bp):
ATGTGGCAGAGCCACCAGAACAGATAT
Found at i:6621689 original size:28 final size:26
Alignment explanation
Indices: 6621627--6621689 Score: 72
Period size: 26 Copynumber: 2.3 Consensus size: 26
6621617 AAAGTACCCC
** * *
6621627 TAGGGGTATAATGGTAATTTTGTACC
1 TAGGGGTATAACAGTAATTTTATACA
6621653 TAGGGGTATAACAGTAATTTTCCATACA
1 TAGGGGTATAACAGTAATTTT--ATACA
6621681 TAGGGGTAT
1 TAGGGGTAT
6621690 TCAAGTAATT
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
26 19 0.61
28 12 0.39
ACGTcount: A:0.30, C:0.10, G:0.25, T:0.35
Consensus pattern (26 bp):
TAGGGGTATAACAGTAATTTTATACA
Found at i:6633433 original size:42 final size:42
Alignment explanation
Indices: 6633386--6633495 Score: 130
Period size: 42 Copynumber: 2.6 Consensus size: 42
6633376 TGTTATCATG
* **
6633386 TAAGACCATATCTGGGATATGGCATTGGTATGAGATTTCGTA
1 TAAGACCATATCTGGGATATGGCATCGAAATGAGATTTCGTA
* * * *
6633428 TAAGACCATGTCTGGGACATGGCGTCGAAATGAGATTTTGTA
1 TAAGACCATATCTGGGATATGGCATCGAAATGAGATTTCGTA
* * *
6633470 CAAGACCATATCTGGAATATGACATC
1 TAAGACCATATCTGGGATATGGCATC
6633496 AATGTGAGAT
Statistics
Matches: 55, Mismatches: 13, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
42 55 1.00
ACGTcount: A:0.31, C:0.15, G:0.25, T:0.29
Consensus pattern (42 bp):
TAAGACCATATCTGGGATATGGCATCGAAATGAGATTTCGTA
Found at i:6644300 original size:21 final size:21
Alignment explanation
Indices: 6644274--6644314 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
6644264 AAACAGAGTC
6644274 TGGGCCTAGACCAGGGAAAGT
1 TGGGCCTAGACCAGGGAAAGT
*
6644295 TGGGCCTAGACCGGGGAAAG
1 TGGGCCTAGACCAGGGAAAG
6644315 AGCAAAATCT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.27, C:0.20, G:0.41, T:0.12
Consensus pattern (21 bp):
TGGGCCTAGACCAGGGAAAGT
Found at i:6644677 original size:42 final size:42
Alignment explanation
Indices: 6644602--6644750 Score: 109
Period size: 42 Copynumber: 3.5 Consensus size: 42
6644592 TGTTATCGTG
* * ** *
6644602 TAAGACCATATCTGGGATATGGCGTTGATATGAGATTTCATA
1 TAAGACCACATCTGGGACATGGCGTCAAAATGAGATTTCATA
* ***
6644644 TAAGACCACGTCTGGGACATGGCGTCAAAATGAGATTTTGGA
1 TAAGACCACATCTGGGACATGGCGTCAAAATGAGATTTCATA
* * * * * * * ** ** *
6644686 TAGGACCATATATGGAATATGGCATCGATGTGAGATCCCATG
1 TAAGACCACATCTGGGACATGGCGTCAAAATGAGATTTCATA
6644728 TAAGACCACATCTGGGACATGGC
1 TAAGACCACATCTGGGACATGGC
6644751 ATCGGCATCT
Statistics
Matches: 77, Mismatches: 30, Indels: 0
0.72 0.28 0.00
Matches are distributed among these distances:
42 77 1.00
ACGTcount: A:0.31, C:0.17, G:0.26, T:0.26
Consensus pattern (42 bp):
TAAGACCACATCTGGGACATGGCGTCAAAATGAGATTTCATA
Found at i:6647371 original size:22 final size:22
Alignment explanation
Indices: 6647339--6647402 Score: 67
Period size: 22 Copynumber: 2.9 Consensus size: 22
6647329 GCAAATACGT
*
6647339 TTGGTACACAGCCATAATCAGG
1 TTGGCACACAGCCATAATCAGG
* *
6647361 TTGGCATACAGCCAT-ATGTAGG
1 TTGGCACACAGCCATAAT-CAGG
* *
6647383 TTGGCGCAAAGCCATAATCA
1 TTGGCACACAGCCATAATCA
6647403 AAATAATTGG
Statistics
Matches: 33, Mismatches: 7, Indels: 4
0.75 0.16 0.09
Matches are distributed among these distances:
21 2 0.06
22 29 0.88
23 2 0.06
ACGTcount: A:0.31, C:0.22, G:0.23, T:0.23
Consensus pattern (22 bp):
TTGGCACACAGCCATAATCAGG
Found at i:6647604 original size:41 final size:41
Alignment explanation
Indices: 6647545--6647667 Score: 149
Period size: 41 Copynumber: 3.0 Consensus size: 41
6647535 TAAAAGCCAC
*
6647545 CGGTGGATCCACGGTCATCAAGAAACGATGCGATCCTTAAT
1 CGGTGGATCCACGGTCATCAAGAAACGATGCGATCCTCAAT
* * * * *
6647586 CGGTGGATCCACGATCATCAAGTAACCATACAATCCTCAAT
1 CGGTGGATCCACGGTCATCAAGAAACGATGCGATCCTCAAT
* * *
6647627 TGATGGATCCACGGTCTTCAAGCAAACG-TGCGATCCTCAAT
1 CGGTGGATCCACGGTCATCAAG-AAACGATGCGATCCTCAAT
6647668 TTCTTCCTCT
Statistics
Matches: 67, Mismatches: 14, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
41 64 0.96
42 3 0.04
ACGTcount: A:0.30, C:0.27, G:0.20, T:0.23
Consensus pattern (41 bp):
CGGTGGATCCACGGTCATCAAGAAACGATGCGATCCTCAAT
Found at i:6647935 original size:27 final size:27
Alignment explanation
Indices: 6647905--6647968 Score: 74
Period size: 27 Copynumber: 2.4 Consensus size: 27
6647895 TTCACCCTAC
*
6647905 AAGGGTGTTTGGGTAAATCTACAAACT
1 AAGGGTATTTGGGTAAATCTACAAACT
* * * *
6647932 AAGGGTATTTTGGTAATTTTACAAACC
1 AAGGGTATTTGGGTAAATCTACAAACT
*
6647959 AACGGTATTT
1 AAGGGTATTT
6647969 CTATAATTTT
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 31 1.00
ACGTcount: A:0.33, C:0.11, G:0.22, T:0.34
Consensus pattern (27 bp):
AAGGGTATTTGGGTAAATCTACAAACT
Found at i:6648067 original size:54 final size:54
Alignment explanation
Indices: 6647932--6648193 Score: 237
Period size: 54 Copynumber: 4.8 Consensus size: 54
6647922 TCTACAAACT
* * *
6647932 AAGGGTATTTTGGTAATTTTACAAACCAACGGTATTTCTATAATTTTTTAAAGTC
1 AAGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTCTATAA-TTTTCAAAATC
** *
6647987 AAGGGTATTTCT-GTAATTTTGTAAATCAAGGGTATTTCTATAATTTTCAAAATC
1 AAGGGTATTT-TGGTAATTTTACAAACCAAGGGTATTTCTATAATTTTCAAAATC
* * * *
6648041 AAGGGTATTTTGGTAATTTTCCAAATCAGGGGTATTT-TGGTAA-TTTCACAAATC
1 AAGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTCT-ATAATTTTCA-AAATC
* * * * * *
6648095 TAGGATATTTTGGTAATTTTACAAACTAGGGGTATTT-TGGTAATTTTGC-TAATC
1 AAGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTCT-ATAATTTT-CAAAATC
* * ** * *
6648149 GATGGTATTTTGGTAATTTTGTAAACCAAGGGTGTTTCAATAATT
1 AAGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTCTATAATT
6648194 CTACCCTATA
Statistics
Matches: 174, Mismatches: 26, Indels: 15
0.81 0.12 0.07
Matches are distributed among these distances:
53 7 0.04
54 125 0.72
55 40 0.23
56 2 0.01
ACGTcount: A:0.31, C:0.09, G:0.18, T:0.42
Consensus pattern (54 bp):
AAGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTCTATAATTTTCAAAATC
Found at i:6648078 original size:27 final size:27
Alignment explanation
Indices: 6647932--6648168 Score: 214
Period size: 27 Copynumber: 8.7 Consensus size: 27
6647922 TCTACAAACT
* *
6647932 AAGGGTATTTTGGTAATTTTACAAACC
1 AAGGGTATTTTGGTAATTTTCCAAATC
* * **
6647959 AACGGTATTTCT-ATAATTTTTTAAAGTC
1 AAGGGTATTT-TGGTAATTTTCCAAA-TC
**
6647987 AAGGGTATTTCT-GTAATTTTGTAAATC
1 AAGGGTATTT-TGGTAATTTTCCAAATC
* *
6648014 AAGGGTATTTCT-ATAATTTTCAAAATC
1 AAGGGTATTT-TGGTAATTTTCCAAATC
6648041 AAGGGTATTTTGGTAATTTTCCAAATC
1 AAGGGTATTTTGGTAATTTTCCAAATC
*
6648068 AGGGGTATTTTGGTAA-TTTCACAAATC
1 AAGGGTATTTTGGTAATTTTC-CAAATC
* * *
6648095 TAGGATATTTTGGTAATTTTACAAA-C
1 AAGGGTATTTTGGTAATTTTCCAAATC
* * *
6648121 TAGGGGTATTTTGGTAATTTTGCTAATC
1 -AAGGGTATTTTGGTAATTTTCCAAATC
* *
6648149 GATGGTATTTTGGTAATTTT
1 AAGGGTATTTTGGTAATTTT
6648169 GTAAACCAAG
Statistics
Matches: 177, Mismatches: 26, Indels: 14
0.82 0.12 0.06
Matches are distributed among these distances:
26 6 0.03
27 143 0.81
28 28 0.16
ACGTcount: A:0.30, C:0.09, G:0.18, T:0.43
Consensus pattern (27 bp):
AAGGGTATTTTGGTAATTTTCCAAATC
Found at i:6648193 original size:81 final size:81
Alignment explanation
Indices: 6647989--6648193 Score: 218
Period size: 81 Copynumber: 2.5 Consensus size: 81
6647979 TTAAAGTCAA
*
6647989 GGGTATTTCT-GTAATTTTGTAAATCAAGGGTATTTCTATAATTTTCAAAATCAAGGGTATTTTG
1 GGGTATTT-TGGTAATTTTGTAAATCAAGGGTATTTCAATAATTTTCAAAATCAAGGGTATTTTG
6648053 GTAATTTTCCAAATCAG
65 GTAATTTTCCAAATCAG
*** * * *** * *
6648070 GGGTATTTTGGTAATTTCACAAATCTAGGATATTTTGGTAATTTTACAAACT-AGGGGTATTTTG
1 GGGTATTTTGGTAATTTTGTAAATCAAGGGTATTTCAATAATTTT-CAAAATCAAGGGTATTTTG
* *
6648134 GTAATTTTGCTAATC-G
65 GTAATTTTCCAAATCAG
* * *
6648150 ATGGTATTTTGGTAATTTTGTAAACCAAGGGTGTTTCAATAATT
1 -GGGTATTTTGGTAATTTTGTAAATCAAGGGTATTTCAATAATT
6648194 CTACCCTATA
Statistics
Matches: 98, Mismatches: 23, Indels: 6
0.77 0.18 0.05
Matches are distributed among these distances:
80 2 0.02
81 91 0.93
82 5 0.05
ACGTcount: A:0.29, C:0.09, G:0.20, T:0.42
Consensus pattern (81 bp):
GGGTATTTTGGTAATTTTGTAAATCAAGGGTATTTCAATAATTTTCAAAATCAAGGGTATTTTGG
TAATTTTCCAAATCAG
Found at i:6648213 original size:27 final size:27
Alignment explanation
Indices: 6648183--6648255 Score: 110
Period size: 27 Copynumber: 2.7 Consensus size: 27
6648173 ACCAAGGGTG
*
6648183 TTTCAATAATTCTACCCTATAGGGGCA
1 TTTCAGTAATTCTACCCTATAGGGGCA
*
6648210 TTTCAGTAATTCTATCCTATAGGGGCA
1 TTTCAGTAATTCTACCCTATAGGGGCA
* *
6648237 TTTCAGTAATACTAGCCTA
1 TTTCAGTAATTCTACCCTA
6648256 CAGATATGAT
Statistics
Matches: 42, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 42 1.00
ACGTcount: A:0.29, C:0.21, G:0.15, T:0.36
Consensus pattern (27 bp):
TTTCAGTAATTCTACCCTATAGGGGCA
Found at i:6651374 original size:41 final size:41
Alignment explanation
Indices: 6651325--6651404 Score: 124
Period size: 41 Copynumber: 2.0 Consensus size: 41
6651315 GTTAAAATCC
* *
6651325 ATCGGTGGATCTACGGTCATTAAGCAACCATGCAATCCTTA
1 ATCGGTGGATCGACGGTCATCAAGCAACCATGCAATCCTTA
* *
6651366 ATCGGTGGATCGACGGTCGTCAAGCAACCATGCGATCCT
1 ATCGGTGGATCGACGGTCATCAAGCAACCATGCAATCCT
6651405 CAATTTCTTC
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
41 35 1.00
ACGTcount: A:0.26, C:0.26, G:0.24, T:0.24
Consensus pattern (41 bp):
ATCGGTGGATCGACGGTCATCAAGCAACCATGCAATCCTTA
Found at i:6651697 original size:27 final size:26
Alignment explanation
Indices: 6651667--6651986 Score: 194
Period size: 27 Copynumber: 11.9 Consensus size: 26
6651657 CATAAATCTA
*
6651667 CAAACCAAGGGTATTTCGCTAATTTTG
1 CAAATCAAGGGTATTTCG-TAATTTTG
* *
6651694 CAAATCAATGGTATTTTTGTAATTTTTG
1 CAAATCAAGGGTA-TTTCGTAA-TTTTG
* * *
6651722 GAAGTTAA-GGTATTTCTGTAATTTTG
1 CAAATCAAGGGTATTTC-GTAATTTTG
* * * *
6651748 TAAATCAGGGGTATTTTTGTAATTTTC
1 CAAATCAAGGGTA-TTTCGTAATTTTG
*
6651775 CAAATCAAGGGTATTTCAGTAATTTTC
1 CAAATCAAGGGTATTTC-GTAATTTTG
* * * *
6651802 CAAATTAGGGGTATTTTGGTAATTTTA
1 CAAATCAAGGGTA-TTTCGTAATTTTG
* **
6651829 CAAAGCAAGGGTATTTCGATAATTTCA
1 CAAATCAAGGGTATTTCG-TAATTTTG
* * * * * *
6651856 AAAATTAGGGGTATTTTGGTAAATTTA
1 CAAATCAAGGGTA-TTTCGTAATTTTG
* * *
6651883 CAAACCAGGGGTATTTCGGTAATTTTT
1 CAAATCAAGGGTATTTC-GTAATTTTG
* * *
6651910 CTAATCGAGGGTATTTTGGTAATTTTG
1 CAAATCAAGGGTA-TTTCGTAATTTTG
* * *
6651937 TAAACCATGGGTA-TTCAGTAATTTTG
1 CAAATCAAGGGTATTTC-GTAATTTTG
* *
6651963 TAAACCAAGGGTATTTCAGTAATT
1 CAAATCAAGGGTATTTC-GTAATT
6651987 CTACCCTACA
Statistics
Matches: 229, Mismatches: 51, Indels: 26
0.75 0.17 0.08
Matches are distributed among these distances:
25 2 0.01
26 43 0.19
27 157 0.69
28 27 0.12
ACGTcount: A:0.30, C:0.10, G:0.20, T:0.40
Consensus pattern (26 bp):
CAAATCAAGGGTATTTCGTAATTTTG
Found at i:6651761 original size:54 final size:54
Alignment explanation
Indices: 6651667--6651978 Score: 226
Period size: 54 Copynumber: 5.8 Consensus size: 54
6651657 CATAAATCTA
* ** *
6651667 CAAACCAAGGGTATTTCGCTAATTTTGCAAATCAATGGTATTTTTGTAATTTTTG
1 CAAATCAAGGGTATTTCG-TAATTTTGCAAATCAGGGGTATTTTTGTAATTTTTC
* * * *
6651722 GAAGTTAA-GGTATTTCTGTAATTTTGTAAATCAGGGGTATTTTTGTAA-TTTTC
1 CAAATCAAGGGTATTTC-GTAATTTTGCAAATCAGGGGTATTTTTGTAATTTTTC
* * * *
6651775 CAAATCAAGGGTATTTCAGTAATTTTCCAAATTAGGGGTATTTTGGTAA-TTTTA
1 CAAATCAAGGGTATTTC-GTAATTTTGCAAATCAGGGGTATTTTTGTAATTTTTC
* *** * * * *
6651829 CAAAGCAAGGGTATTTCGATAATTTCAAAAATTAGGGGTATTTTGGTAA-ATTTA
1 CAAATCAAGGGTATTTCG-TAATTTTGCAAATCAGGGGTATTTTTGTAATTTTTC
* * * * *
6651883 CAAACCAGGGGTATTTCGGTAATTTTTCTAATC-GAGGGTATTTTGGTAATTTTGT-
1 CAAATCAAGGGTATTTC-GTAATTTTGCAAATCAG-GGGTATTTTTGTAATTTT-TC
* * * * *
6651938 -AAACCATGGGTA-TTCAGTAATTTTGTAAACCAAGGGTATTT
1 CAAATCAAGGGTATTTC-GTAATTTTGCAAATCAGGGGTATTT
6651979 CAGTAATTCT
Statistics
Matches: 212, Mismatches: 37, Indels: 18
0.79 0.14 0.07
Matches are distributed among these distances:
53 33 0.16
54 170 0.80
55 8 0.04
56 1 0.00
ACGTcount: A:0.30, C:0.10, G:0.20, T:0.40
Consensus pattern (54 bp):
CAAATCAAGGGTATTTCGTAATTTTGCAAATCAGGGGTATTTTTGTAATTTTTC
Found at i:6652051 original size:27 final size:27
Alignment explanation
Indices: 6651968--6652039 Score: 117
Period size: 27 Copynumber: 2.7 Consensus size: 27
6651958 TTTTGTAAAC
6651968 CAAGGGTATTTCAGTAATTCTACCCTA
1 CAAGGGTATTTCAGTAATTCTACCCTA
* * *
6651995 CAGGGGCATTTTAGTAATTCTACCCTA
1 CAAGGGTATTTCAGTAATTCTACCCTA
6652022 CAAGGGTATTTCAGTAAT
1 CAAGGGTATTTCAGTAAT
6652040 ACTAGCCAAC
Statistics
Matches: 39, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 39 1.00
ACGTcount: A:0.29, C:0.19, G:0.18, T:0.33
Consensus pattern (27 bp):
CAAGGGTATTTCAGTAATTCTACCCTA
Found at i:6652700 original size:43 final size:43
Alignment explanation
Indices: 6652648--6652734 Score: 147
Period size: 43 Copynumber: 2.0 Consensus size: 43
6652638 TCATATTTTA
*
6652648 TCCTCAATTAATTATAAGGCATATGTGCTAACATCCAGATTCC
1 TCCTCAATTAATTATAAGGCACATGTGCTAACATCCAGATTCC
* *
6652691 TCCTCAATTAATTATAAGGCACATGTGCTAACGTCTAGATTCC
1 TCCTCAATTAATTATAAGGCACATGTGCTAACATCCAGATTCC
6652734 T
1 T
6652735 TTAAAAGAAA
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
43 41 1.00
ACGTcount: A:0.31, C:0.23, G:0.13, T:0.33
Consensus pattern (43 bp):
TCCTCAATTAATTATAAGGCACATGTGCTAACATCCAGATTCC
Found at i:6653919 original size:40 final size:41
Alignment explanation
Indices: 6653860--6653936 Score: 111
Period size: 41 Copynumber: 1.9 Consensus size: 41
6653850 GATTCAACTA
* *
6653860 AATGGTCAAATGCCTTC-TTTATGAACATCCATGCATGTTG
1 AATGGTCAAATCCCCTCTTTTATGAACATCCATGCATGTTG
**
6653900 AATGGTCAAATCCCCTCTTTTATGAATGTCCATGCAT
1 AATGGTCAAATCCCCTCTTTTATGAACATCCATGCAT
6653937 CCCTTTTTAA
Statistics
Matches: 32, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
40 15 0.47
41 17 0.53
ACGTcount: A:0.27, C:0.22, G:0.16, T:0.35
Consensus pattern (41 bp):
AATGGTCAAATCCCCTCTTTTATGAACATCCATGCATGTTG
Found at i:6656531 original size:31 final size:31
Alignment explanation
Indices: 6656493--6656555 Score: 117
Period size: 31 Copynumber: 2.0 Consensus size: 31
6656483 GTTCAATGAC
*
6656493 AATGGCTGACGATGGTCGACAACAACCCGGT
1 AATGGCTGACGATGGGCGACAACAACCCGGT
6656524 AATGGCTGACGATGGGCGACAACAACCCGGT
1 AATGGCTGACGATGGGCGACAACAACCCGGT
6656555 A
1 A
6656556 GTGGTCGACT
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.30, C:0.25, G:0.30, T:0.14
Consensus pattern (31 bp):
AATGGCTGACGATGGGCGACAACAACCCGGT
Found at i:6660900 original size:27 final size:26
Alignment explanation
Indices: 6660862--6660930 Score: 88
Period size: 25 Copynumber: 2.7 Consensus size: 26
6660852 AGTTCCGACC
* *
6660862 CACAACTCGTGTGAGCAAGCCCATT-TT
1 CACAGCTCGTGTGAGCAA-CAC-TTATT
6660889 CACAGCTCGTGTGAGC-ACACTTATT
1 CACAGCTCGTGTGAGCAACACTTATT
6660914 CACAGCTCGTGTGAGCA
1 CACAGCTCGTGTGAGCA
6660931 CATATGTACA
Statistics
Matches: 38, Mismatches: 2, Indels: 5
0.84 0.04 0.11
Matches are distributed among these distances:
24 2 0.05
25 20 0.53
26 1 0.03
27 15 0.39
ACGTcount: A:0.25, C:0.29, G:0.22, T:0.25
Consensus pattern (26 bp):
CACAGCTCGTGTGAGCAACACTTATT
Found at i:6664362 original size:31 final size:31
Alignment explanation
Indices: 6664324--6664385 Score: 115
Period size: 31 Copynumber: 2.0 Consensus size: 31
6664314 GCCATGTAAC
*
6664324 CTTCAACCCAGGGCCACACGGCCATGTCCCA
1 CTTCAACCCAGGGACACACGGCCATGTCCCA
6664355 CTTCAACCCAGGGACACACGGCCATGTCCCA
1 CTTCAACCCAGGGACACACGGCCATGTCCCA
6664386 GCCTATGTTG
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.24, C:0.44, G:0.19, T:0.13
Consensus pattern (31 bp):
CTTCAACCCAGGGACACACGGCCATGTCCCA
Found at i:6666062 original size:55 final size:54
Alignment explanation
Indices: 6665975--6666229 Score: 233
Period size: 55 Copynumber: 4.8 Consensus size: 54
6665965 ATTAGGGTTT
* *
6665975 AAGGATACCGTGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAA-GTTTCTAAGGC
* * * * * *
6666030 AAGGAAATCATGTAAGACGATGTCAAGACATGGC-ATTGATAAGTTACTATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAAGTT--TCTAAGGC
* * * *
6666085 AAAGG-TCCCATGTAAAACCATGCCAAGGCATGGC-ATTGGTGAG-TTCATAAGGC
1 -AAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAAGTTTC-TAAGGC
* *
6666138 AAGGCTACCATGTAAGACCATGTCAAGACATGGCAA-TGGTAAGTTTC-AA---
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAAGTTTCTAAGGC
* * * *
6666187 AAGGATACCATGTAAGACAATGACAAGTCATGG-AAATGGTAAG
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAAG
6666230 GTACCCGTGT
Statistics
Matches: 165, Mismatches: 27, Indels: 22
0.77 0.13 0.10
Matches are distributed among these distances:
48 2 0.01
49 36 0.22
52 7 0.04
53 40 0.24
54 12 0.07
55 64 0.39
56 4 0.02
ACGTcount: A:0.36, C:0.16, G:0.25, T:0.22
Consensus pattern (54 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAAGTTTCTAAGGC
Found at i:6666181 original size:108 final size:110
Alignment explanation
Indices: 6665985--6666182 Score: 294
Period size: 108 Copynumber: 1.8 Consensus size: 110
6665975 AAGGATACCG
* * *
6665985 TGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGCAAGGAAATCATGTAAGACGA
1 TGTAAAACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGCAAGGAAACCATGTAAGACCA
*
6666050 TGTCAAGACATGGCATTGATAAGTTACTATAAGGCAAAGGTCCCA
66 TGTCAAGACATGGCAATGATAAGTTACTATAAGGCAAAGGTCCCA
* **
6666095 TGTAAAACCATGCCAAGGCATGGC-ATTGGTGA-G-TTCATAAGGCAAGGCTACCATGTAAGACC
1 TGTAAAACCATGCCAAGGCATGGCAATTGGTAAGGTTTC-TAAGGCAAGGAAACCATGTAAGACC
*
6666157 ATGTCAAGACATGGCAATGGTAAGTT
65 ATGTCAAGACATGGCAATGATAAGTT
6666183 TCAAAAGGAT
Statistics
Matches: 79, Mismatches: 8, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
107 3 0.04
108 46 0.58
109 7 0.09
110 23 0.29
ACGTcount: A:0.34, C:0.17, G:0.26, T:0.23
Consensus pattern (110 bp):
TGTAAAACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGCAAGGAAACCATGTAAGACCA
TGTCAAGACATGGCAATGATAAGTTACTATAAGGCAAAGGTCCCA
Found at i:6666442 original size:16 final size:16
Alignment explanation
Indices: 6666421--6666451 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
6666411 ATAAATTAGA
6666421 TTAAGTAAGTAAGTAT
1 TTAAGTAAGTAAGTAT
*
6666437 TTAAGTAAGTGAGTA
1 TTAAGTAAGTAAGTA
6666452 AGTGAAGAAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.00, G:0.23, T:0.35
Consensus pattern (16 bp):
TTAAGTAAGTAAGTAT
Found at i:6673337 original size:47 final size:47
Alignment explanation
Indices: 6673277--6673722 Score: 658
Period size: 47 Copynumber: 9.4 Consensus size: 47
6673267 CAGCCAAGAC
*
6673277 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* *
6673324 ACTGTATATATGTGATAAGGCCTAATGGCCGATGTGCTGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* *
6673371 AGTGTATATATATGTGATAAGGCCTAATAGCCGATCTGATGAATGTGAA
1 AGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
*
6673420 AGTGTATATATGTAATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* *
6673467 ACTGTATATATGTGATAAGGCCTAATGGCCGATGTGCTGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* *
6673514 AGTGTATATATATGTGATAAGGCCTAATAGCCGATCTGATGAATGTGAA
1 AGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
*
6673563 AGTGTATATATGTAATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
*
6673610 ACTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* * * * * * * *
6673657 AGTGTATATATGCGACAGGGCCGAGTGGCCAACGTGATGGATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* *
6673704 AGTGCATAAATGTGATAAG
1 AGTGTATATATGTGATAAG
6673723 TCCCGAAGGG
Statistics
Matches: 359, Mismatches: 36, Indels: 8
0.89 0.09 0.02
Matches are distributed among these distances:
47 271 0.75
49 88 0.25
ACGTcount: A:0.33, C:0.11, G:0.28, T:0.29
Consensus pattern (47 bp):
AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
Found at i:6673388 original size:96 final size:94
Alignment explanation
Indices: 6673277--6673722 Score: 640
Period size: 96 Copynumber: 4.7 Consensus size: 94
6673267 CAGCCAAGAC
6673277 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAACTGTATATATGTGATAA
1 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAACTGTATATATGTGATAA
*
6673342 GGCCTAATGGCCGATGTGCTGAATGTGAA
66 GGCCTAATGGCCGATGTGATGAATGTGAA
* * *
6673371 AGTGTATATATATGTGATAAGGCCTAATAGCCGATCTGATGAATGTGAAAGTGTATATATGTAAT
1 AGTG--TATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAACTGTATATATGTGAT
6673436 AAGGCCTAATGGCCGATGTGATGAATGTGAA
64 AAGGCCTAATGGCCGATGTGATGAATGTGAA
* * * *
6673467 ACTGTATATATGTGATAAGGCCTAATGGCCGATGTGCTGAATGTGAAAGTGTATATATATGTGAT
1 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAACTG--TATATATGTGAT
* *
6673532 AAGGCCTAATAGCCGATCTGATGAATGTGAA
64 AAGGCCTAATGGCCGATGTGATGAATGTGAA
* *
6673563 AGTGTATATATGTAATAAGGCCTAATGGCCGATGTGATGAATGTGAAACTGTATATATGTGATAA
1 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAACTGTATATATGTGATAA
6673628 GGCCTAATGGCCGATGTGATGAATGTGAA
66 GGCCTAATGGCCGATGTGATGAATGTGAA
* * * * * * * * * * * *
6673657 AGTGTATATATGCGACAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGCATAAATGTGATAA
1 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAACTGTATATATGTGATAA
6673722 G
66 G
6673723 TCCCGAAGGG
Statistics
Matches: 319, Mismatches: 29, Indels: 8
0.90 0.08 0.02
Matches are distributed among these distances:
94 143 0.45
96 176 0.55
ACGTcount: A:0.33, C:0.11, G:0.28, T:0.29
Consensus pattern (94 bp):
AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAACTGTATATATGTGATAA
GGCCTAATGGCCGATGTGATGAATGTGAA
Found at i:6673535 original size:143 final size:143
Alignment explanation
Indices: 6673277--6673667 Score: 755
Period size: 143 Copynumber: 2.7 Consensus size: 143
6673267 CAGCCAAGAC
* *
6673277 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAACTGTATATATGTGATAA
1 AGTGTATATATGTAATAAGGCCTAATGGCCGATGTGATGAATGTGAAACTGTATATATGTGATAA
6673342 GGCCTAATGGCCGATGTGCTGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATAGCCGATC
66 GGCCTAATGGCCGATGTGCTGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATAGCCGATC
6673407 TGATGAATGTGAA
131 TGATGAATGTGAA
6673420 AGTGTATATATGTAATAAGGCCTAATGGCCGATGTGATGAATGTGAAACTGTATATATGTGATAA
1 AGTGTATATATGTAATAAGGCCTAATGGCCGATGTGATGAATGTGAAACTGTATATATGTGATAA
6673485 GGCCTAATGGCCGATGTGCTGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATAGCCGATC
66 GGCCTAATGGCCGATGTGCTGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATAGCCGATC
6673550 TGATGAATGTGAA
131 TGATGAATGTGAA
6673563 AGTGTATATATGTAATAAGGCCTAATGGCCGATGTGATGAATGTGAAACTGTATATATGTGATAA
1 AGTGTATATATGTAATAAGGCCTAATGGCCGATGTGATGAATGTGAAACTGTATATATGTGATAA
*
6673628 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
66 GGCCTAATGGCCGATGTGCTGAATGTGAAAGTGTATATAT
6673668 GCGACAGGGC
Statistics
Matches: 245, Mismatches: 3, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
143 245 1.00
ACGTcount: A:0.33, C:0.10, G:0.27, T:0.30
Consensus pattern (143 bp):
AGTGTATATATGTAATAAGGCCTAATGGCCGATGTGATGAATGTGAAACTGTATATATGTGATAA
GGCCTAATGGCCGATGTGCTGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATAGCCGATC
TGATGAATGTGAA
Found at i:6673897 original size:37 final size:37
Alignment explanation
Indices: 6673841--6673919 Score: 115
Period size: 37 Copynumber: 2.1 Consensus size: 37
6673831 CCGAGCTCTA
* *
6673841 AAGACCCGATGACTACGTGTGG-GAATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAG-ATTATGTCCGGGT
*
6673878 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
6673915 AAGAC
1 AAGAC
6673920 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
37 37 0.97
38 1 0.03
ACGTcount: A:0.25, C:0.19, G:0.30, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:6678093 original size:55 final size:54
Alignment explanation
Indices: 6678006--6678260 Score: 242
Period size: 55 Copynumber: 4.8 Consensus size: 54
6677996 ATTAGGGTTT
* *
6678006 AAGGATACCGTGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAA-GTTTCTAAGGC
* * * * *
6678061 AAGGAAATCATGTAAGACCATGTCAAGACATGGC-ATTGATAAGTTACTATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAAGTT--TCTAAGGC
* * * *
6678116 AAAGG-TCCCATGTAAAACCATGCCAAGGCATGGC-ATTGGTGAG-TTCATAAGGC
1 -AAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAAGTTTC-TAAGGC
* *
6678169 AAGGCTACCATGTAAGACCATGTCAAGACATGGCAA-TGGTAAGTTTC-AA---
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAAGTTTCTAAGGC
* * * *
6678218 AAGGATACCACGTAAGACCATGACAAGTCATGG-AAATGGTAAG
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAAG
6678261 GTACCCGTGT
Statistics
Matches: 167, Mismatches: 25, Indels: 22
0.78 0.12 0.10
Matches are distributed among these distances:
48 2 0.01
49 36 0.22
52 7 0.04
53 40 0.24
54 12 0.07
55 66 0.40
56 4 0.02
ACGTcount: A:0.36, C:0.18, G:0.25, T:0.21
Consensus pattern (54 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAAGTTTCTAAGGC
Found at i:6678212 original size:108 final size:110
Alignment explanation
Indices: 6678016--6678213 Score: 303
Period size: 108 Copynumber: 1.8 Consensus size: 110
6678006 AAGGATACCG
* *
6678016 TGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGCAAGGAAATCATGTAAGACCA
1 TGTAAAACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGCAAGGAAACCATGTAAGACCA
*
6678081 TGTCAAGACATGGCATTGATAAGTTACTATAAGGCAAAGGTCCCA
66 TGTCAAGACATGGCAATGATAAGTTACTATAAGGCAAAGGTCCCA
* **
6678126 TGTAAAACCATGCCAAGGCATGGC-ATTGGTGA-G-TTCATAAGGCAAGGCTACCATGTAAGACC
1 TGTAAAACCATGCCAAGGCATGGCAATTGGTAAGGTTTC-TAAGGCAAGGAAACCATGTAAGACC
*
6678188 ATGTCAAGACATGGCAATGGTAAGTT
65 ATGTCAAGACATGGCAATGATAAGTT
6678214 TCAAAAGGAT
Statistics
Matches: 80, Mismatches: 7, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
107 3 0.04
108 47 0.59
109 7 0.09
110 23 0.29
ACGTcount: A:0.34, C:0.18, G:0.25, T:0.23
Consensus pattern (110 bp):
TGTAAAACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGCAAGGAAACCATGTAAGACCA
TGTCAAGACATGGCAATGATAAGTTACTATAAGGCAAAGGTCCCA
Found at i:6678473 original size:16 final size:16
Alignment explanation
Indices: 6678452--6678482 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
6678442 ATAAATTTGA
6678452 TTAAGTAAGTAAGTAT
1 TTAAGTAAGTAAGTAT
*
6678468 TTAAGTAAGTGAGTA
1 TTAAGTAAGTAAGTA
6678483 AGTGAAGAAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.00, G:0.23, T:0.35
Consensus pattern (16 bp):
TTAAGTAAGTAAGTAT
Found at i:6682410 original size:93 final size:93
Alignment explanation
Indices: 6682251--6682421 Score: 252
Period size: 93 Copynumber: 1.8 Consensus size: 93
6682241 GGATGGTTGA
* * *
6682251 GCATCCGAACTCGTTGAGTTGAGTCCAAATTCACTCATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCAAATTCACTCATGGATACGAACGCCCGAACTCGTTGAGT
*
6682316 TGATTCCGAGTTCGTGAAATGTAACTAG
66 TGAGTCCGAGTTCGTGAAATGTAACTAG
* * * * *
6682344 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATACGAACGCCCGAGCTTGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCAAATTCACTCATGGATACGAACGCCCGAACTCGTTGAGT
*
6682409 TGAGTCTGAGTTC
66 TGAGTCCGAGTTC
6682422 ACTTAGGGGC
Statistics
Matches: 68, Mismatches: 10, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
93 68 1.00
ACGTcount: A:0.23, C:0.21, G:0.26, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCAAATTCACTCATGGATACGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAAATGTAACTAG
Found at i:6686845 original size:39 final size:39
Alignment explanation
Indices: 6686788--6687102 Score: 513
Period size: 39 Copynumber: 8.1 Consensus size: 39
6686778 ATGCAAGACA
* *
6686788 CTGGAAATGTATCCGGGCTAAAATCCCGCCGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
*
6686827 CTAGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
* *
6686866 CTGGAAATATATCCGGGCCAAAGTCCCGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
* *
6686905 CTGGAAATGTATCTGGGCTAAAGTCCCGCAGGCTTCATG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
* *
6686944 CTGGAAATATATCCGGGCCAAAGTCCCGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
6686983 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
*
6687022 CTGGAAATGTATCCGGGCCAAAGTCCCGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
* * *
6687061 CTGGAAATGTATCTGGGTTAAAGTCCCGCAGGCTTTGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
6687100 CTG
1 CTG
6687103 ATAATATAAT
Statistics
Matches: 255, Mismatches: 21, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
39 255 1.00
ACGTcount: A:0.22, C:0.26, G:0.29, T:0.23
Consensus pattern (39 bp):
CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
Found at i:6693276 original size:46 final size:46
Alignment explanation
Indices: 6693223--6693344 Score: 199
Period size: 46 Copynumber: 2.7 Consensus size: 46
6693213 TGAGCATCCA
* *
6693223 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGAATGCGAATGGCCG
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGAATGCGAACGCCCG
* *
6693269 AACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCGAACGCCCG
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGAATGCGAACGCCCG
*
6693315 AGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTA
6693345 GGGGCGGGTT
Statistics
Matches: 70, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
46 70 1.00
ACGTcount: A:0.23, C:0.21, G:0.27, T:0.29
Consensus pattern (46 bp):
AACTCGTTGAGTTGAGTCCGAGTTCACTTATGAATGCGAACGCCCG
Found at i:6695004 original size:59 final size:59
Alignment explanation
Indices: 6694935--6695047 Score: 208
Period size: 59 Copynumber: 1.9 Consensus size: 59
6694925 GCCTATATAC
6694935 ATAATACAAGGTTCATTATTTCAAAATGTAATCCAACCTATACATGCCATAATTCAAGA
1 ATAATACAAGGTTCATTATTTCAAAATGTAATCCAACCTATACATGCCATAATTCAAGA
* *
6694994 ATAATCCAAGGTTCATTATTTCAAAATGTAATCCAGCCTATACATGCCATAATT
1 ATAATACAAGGTTCATTATTTCAAAATGTAATCCAACCTATACATGCCATAATT
6695048 AAAGTTCAAC
Statistics
Matches: 52, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
59 52 1.00
ACGTcount: A:0.40, C:0.19, G:0.09, T:0.32
Consensus pattern (59 bp):
ATAATACAAGGTTCATTATTTCAAAATGTAATCCAACCTATACATGCCATAATTCAAGA
Found at i:6695026 original size:27 final size:27
Alignment explanation
Indices: 6694936--6695028 Score: 73
Period size: 27 Copynumber: 3.3 Consensus size: 27
6694926 CCTATATACA
*
6694936 TAATACAAGGTTCATTATTTCAAAATG
1 TAATCCAAGGTTCATTATTTCAAAATG
** *
6694963 TAATCCAACCTATACATGCCATAATTCAAGAA--
1 TAATCCAAGGT-T-CAT----TATTTCAA-AATG
6694995 TAATCCAAGGTTCATTATTTCAAAATG
1 TAATCCAAGGTTCATTATTTCAAAATG
6695022 TAATCCA
1 TAATCCA
6695029 GCCTATACAT
Statistics
Matches: 50, Mismatches: 7, Indels: 18
0.67 0.09 0.24
Matches are distributed among these distances:
25 2 0.04
26 7 0.14
27 15 0.30
28 1 0.02
29 3 0.06
30 3 0.06
31 1 0.02
32 9 0.18
33 7 0.14
34 2 0.04
ACGTcount: A:0.41, C:0.18, G:0.09, T:0.32
Consensus pattern (27 bp):
TAATCCAAGGTTCATTATTTCAAAATG
Found at i:6697312 original size:20 final size:22
Alignment explanation
Indices: 6697287--6697332 Score: 69
Period size: 23 Copynumber: 2.1 Consensus size: 22
6697277 TCATAATAAA
6697287 ATATTT-T-GAATATGTACATC
1 ATATTTGTCGAATATGTACATC
6697307 ATATTTGGTCGAATATGTACATC
1 ATATTT-GTCGAATATGTACATC
6697330 ATA
1 ATA
6697333 ATCTGCATGG
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
20 6 0.26
22 1 0.04
23 16 0.70
ACGTcount: A:0.35, C:0.11, G:0.13, T:0.41
Consensus pattern (22 bp):
ATATTTGTCGAATATGTACATC
Found at i:6700885 original size:55 final size:53
Alignment explanation
Indices: 6700777--6701021 Score: 205
Period size: 55 Copynumber: 4.6 Consensus size: 53
6700767 ATTAGAGTTT
* * * *
6700777 AAGGATACCATGTAAGACCATGCCAAGGCATGGTAATTGGTAAGGTTTC-TAAGGA
1 AAGGATACCATGTAAGACCATGTCAAGACATGG-CATTGATAA-G-TTCATAAGGA
* * *
6700832 AAGGAAATCATGTAAGACCATGTTAAGACATGGCATTGATAAGTTACTATAAGGCA
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGATAAGTT-C-ATAAGG-A
* * * * * *
6700888 AAGG-TCCCATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTCATAAGGC
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGATAAGTTCATAAGGA
* * * * * *
6700940 AAGGATACCAAGTAAGGCCATGTCAAGACATGACAATGGTAAGTT--TCA--A
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGATAAGTTCATAAGGA
* *
6700989 AAGGATACCATGTAAGACCATGACAAGTCATGG
1 AAGGATACCATGTAAGACCATGTCAAGACATGG
6701022 AAATGGTAAG
Statistics
Matches: 154, Mismatches: 31, Indels: 16
0.77 0.15 0.08
Matches are distributed among these distances:
49 28 0.18
51 2 0.01
52 6 0.04
53 40 0.26
54 8 0.05
55 65 0.42
56 5 0.03
ACGTcount: A:0.37, C:0.16, G:0.25, T:0.22
Consensus pattern (53 bp):
AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGATAAGTTCATAAGGA
Found at i:6700983 original size:108 final size:110
Alignment explanation
Indices: 6700784--6700984 Score: 273
Period size: 108 Copynumber: 1.8 Consensus size: 110
6700774 TTTAAGGATA
* *
6700784 CCATGTAAGACCATGCCAAGGCATGGTAATTGGTAAGGTTTCTAAGGAAAGGAAATCATGTAAGA
1 CCATGTAAGACCATGCCAAGGCATGGTAATTGGTAAGGTTTCTAAGGAAAGGAAACCAAGTAAGA
* * *
6700849 CCATGTTAAGACATGGCATTGATAAGTTACTATAAGGCAAAGGTC
66 CCATGTCAAGACATGACAATGATAAGTTACTATAAGGCAAAGGTC
* * * *
6700894 CCATGTAAGACCATGCCAAGGCATGG-CATTGGTGA-G-TTCATAAGGCAAGGATACCAAGTAAG
1 CCATGTAAGACCATGCCAAGGCATGGTAATTGGTAAGGTTTC-TAAGGAAAGGAAACCAAGTAAG
* *
6700956 GCCATGTCAAGACATGACAATGGTAAGTT
65 ACCATGTCAAGACATGACAATGATAAGTT
6700985 TCAAAAGGAT
Statistics
Matches: 79, Mismatches: 11, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
107 3 0.04
108 43 0.54
109 7 0.09
110 26 0.33
ACGTcount: A:0.35, C:0.16, G:0.25, T:0.23
Consensus pattern (110 bp):
CCATGTAAGACCATGCCAAGGCATGGTAATTGGTAAGGTTTCTAAGGAAAGGAAACCAAGTAAGA
CCATGTCAAGACATGACAATGATAAGTTACTATAAGGCAAAGGTC
Found at i:6701130 original size:23 final size:24
Alignment explanation
Indices: 6701100--6701144 Score: 83
Period size: 23 Copynumber: 1.9 Consensus size: 24
6701090 AAGGTAAGGT
6701100 AAGGTAAGACAAGTT-ATGCTAAA
1 AAGGTAAGACAAGTTCATGCTAAA
6701123 AAGGTAAGACAAGTTCATGCTA
1 AAGGTAAGACAAGTTCATGCTA
6701145 GAAGAGAAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
23 15 0.71
24 6 0.29
ACGTcount: A:0.44, C:0.11, G:0.22, T:0.22
Consensus pattern (24 bp):
AAGGTAAGACAAGTTCATGCTAAA
Found at i:6701244 original size:16 final size:16
Alignment explanation
Indices: 6701223--6701253 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
6701213 ATAAATTTGA
6701223 TTAAGTAAGTAAGTAT
1 TTAAGTAAGTAAGTAT
*
6701239 TTAAGTAAGTGAGTA
1 TTAAGTAAGTAAGTA
6701254 AGTGAAGAAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.00, G:0.23, T:0.35
Consensus pattern (16 bp):
TTAAGTAAGTAAGTAT
Found at i:6708163 original size:30 final size:30
Alignment explanation
Indices: 6708119--6708177 Score: 75
Period size: 30 Copynumber: 2.0 Consensus size: 30
6708109 TCCGAGCATT
*
6708119 GGGGAAAAAGTGTAAATATGTAAAAGTTTA
1 GGGGAAAAAGTGTAAATATGCAAAAGTTTA
* *
6708149 GGGGCAAAAA-TGTAATTTTGCAAAAGTTT
1 GGGG-AAAAAGTGTAAATATGCAAAAGTTT
6708178 GAGTCAAGGA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
30 20 0.80
31 5 0.20
ACGTcount: A:0.42, C:0.03, G:0.25, T:0.29
Consensus pattern (30 bp):
GGGGAAAAAGTGTAAATATGCAAAAGTTTA
Found at i:6708548 original size:20 final size:20
Alignment explanation
Indices: 6708523--6708564 Score: 84
Period size: 20 Copynumber: 2.1 Consensus size: 20
6708513 TAAGGATACA
6708523 ATGTAAGACCATGCCAAGGC
1 ATGTAAGACCATGCCAAGGC
6708543 ATGTAAGACCATGCCAAGGC
1 ATGTAAGACCATGCCAAGGC
6708563 AT
1 AT
6708565 CAAGGCATGG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.36, C:0.24, G:0.24, T:0.17
Consensus pattern (20 bp):
ATGTAAGACCATGCCAAGGC
Found at i:6708629 original size:55 final size:54
Alignment explanation
Indices: 6708564--6708796 Score: 200
Period size: 55 Copynumber: 4.4 Consensus size: 54
6708554 TGCCAAGGCA
* * *
6708564 TCAAGGCATGGCAATTGGTAAGGTTTCTAAGGCAAGGAAATCATGTAAGACCATG
1 TCAAGACATGGCAATTGGTAA-GTTTCTAAGGCAAGGATACCATGTAAGACCATG
** * * *
6708619 TCAAGACATGGC-ATTGACAAGTTACTATAAGGCAAAGG-TCCCATGGAAGACCATG
1 TCAAGACATGGCAATTGGTAAGTT--TCTAAGGC-AAGGATACCATGTAAGACCATG
* *
6708674 -CTAAGGCATGGC-ATTGGTGAG-TTCATAAGGCAAGGATACCATGTAAGACCATG
1 TC-AAGACATGGCAATTGGTAAGTTTC-TAAGGCAAGGATACCATGTAAGACCATG
* **
6708727 TCAAGACATGGCAA-TGCTAAGTTTC-AA---AAGGATACCACATAAGACCATG
1 TCAAGACATGGCAATTGGTAAGTTTCTAAGGCAAGGATACCATGTAAGACCATG
* *
6708776 ACAAGTCATGGCAA-TGGTAAG
1 TCAAGACATGGCAATTGGTAAG
6708797 GTACCCGTGT
Statistics
Matches: 146, Mismatches: 23, Indels: 24
0.76 0.12 0.12
Matches are distributed among these distances:
49 38 0.26
52 7 0.05
53 38 0.26
54 13 0.09
55 46 0.32
56 4 0.03
ACGTcount: A:0.36, C:0.18, G:0.25, T:0.21
Consensus pattern (54 bp):
TCAAGACATGGCAATTGGTAAGTTTCTAAGGCAAGGATACCATGTAAGACCATG
Found at i:6710398 original size:47 final size:47
Alignment explanation
Indices: 6710329--6710427 Score: 180
Period size: 47 Copynumber: 2.1 Consensus size: 47
6710319 AGGCTCAAAG
6710329 GGGTTCACTAAGGGTCAATTATGAAGGTAAGCTTTTGTGGAGTGAGT
1 GGGTTCACTAAGGGTCAATTATGAAGGTAAGCTTTTGTGGAGTGAGT
* *
6710376 GGGTTCAGTAAGGGTCAATTATGAAGGTAGGCTTTTGTGGAGTGAGT
1 GGGTTCACTAAGGGTCAATTATGAAGGTAAGCTTTTGTGGAGTGAGT
6710423 GGGTT
1 GGGTT
6710428 AAACTTAAGT
Statistics
Matches: 50, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
47 50 1.00
ACGTcount: A:0.23, C:0.07, G:0.37, T:0.32
Consensus pattern (47 bp):
GGGTTCACTAAGGGTCAATTATGAAGGTAAGCTTTTGTGGAGTGAGT
Found at i:6727522 original size:56 final size:56
Alignment explanation
Indices: 6727431--6727693 Score: 379
Period size: 56 Copynumber: 4.7 Consensus size: 56
6727421 TGCCACTTGT
* * *
6727431 AATCACATATCGATGCC-ACGGT-TCTAGACAG-GGTCTTACTCGCACACTTATATCGG
1 AATCACATATCGATGCCAAC-GTAT-TAAAC-GTGGTCTTACTCGCACACATATATCAG
* * * **
6727487 AGTCACATATCGATGCCAATGTATTAAATGTGGTCTTACTCGCACACATATATTGG
1 AATCACATATCGATGCCAACGTATTAAACGTGGTCTTACTCGCACACATATATCAG
*
6727543 AATCACATATCGATGCCAACGTATTAAATGTGGTCTTACTCGCACACATATATCAG
1 AATCACATATCGATGCCAACGTATTAAACGTGGTCTTACTCGCACACATATATCAG
*
6727599 AATCACATATCGATGCCAACGTATTAAACGTGGTCTTACTCACACACATATATCAG
1 AATCACATATCGATGCCAACGTATTAAACGTGGTCTTACTCGCACACATATATCAG
*
6727655 AATCACATATCGATGCCAACGTATTAAACATGGTCTTAC
1 AATCACATATCGATGCCAACGTATTAAACGTGGTCTTAC
6727694 ACATAAACAC
Statistics
Matches: 191, Mismatches: 13, Indels: 6
0.91 0.06 0.03
Matches are distributed among these distances:
55 1 0.01
56 188 0.98
57 2 0.01
ACGTcount: A:0.32, C:0.24, G:0.16, T:0.29
Consensus pattern (56 bp):
AATCACATATCGATGCCAACGTATTAAACGTGGTCTTACTCGCACACATATATCAG
Found at i:6729922 original size:29 final size:29
Alignment explanation
Indices: 6729887--6729943 Score: 96
Period size: 29 Copynumber: 2.0 Consensus size: 29
6729877 GGGCCAACGG
* *
6729887 GCCATATAAATGTGATTTTGGCCTAATGA
1 GCCATATAAAGGTGATTTGGGCCTAATGA
6729916 GCCATATAAAGGTGATTTGGGCCTAATG
1 GCCATATAAAGGTGATTTGGGCCTAATG
6729944 GGCATGTGAA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 26 1.00
ACGTcount: A:0.30, C:0.14, G:0.25, T:0.32
Consensus pattern (29 bp):
GCCATATAAAGGTGATTTGGGCCTAATGA
Found at i:6737229 original size:68 final size:66
Alignment explanation
Indices: 6737155--6737326 Score: 170
Period size: 67 Copynumber: 2.6 Consensus size: 66
6737145 CATCATGTGT
* * * *
6737155 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGTGATACTA-TG-TGTACACCA
1 ACAAGAGAGCTAC--GACA-TAT-ATGTAGCTAGGTCGCATGCGTGATACCAGTGAAGGACACCA
6737218 TGTAG
62 TGTAG
** * *
6737223 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAGGACACCATGT
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGATACCA-GTGAAGGACACCATGT
6737288 AG
65 AG
* * * *
6737290 ACAAGAGAGCTACGAGATAAAT-TGGCTAGGTCACATG
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATG
6737327 GGTGGTACTG
Statistics
Matches: 89, Mismatches: 12, Indels: 8
0.82 0.11 0.07
Matches are distributed among these distances:
64 24 0.27
65 3 0.03
66 17 0.19
67 32 0.36
68 13 0.15
ACGTcount: A:0.32, C:0.17, G:0.29, T:0.22
Consensus pattern (66 bp):
ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGATACCAGTGAAGGACACCATGTA
G
Found at i:6737260 original size:64 final size:64
Alignment explanation
Indices: 6737179--6737362 Score: 203
Period size: 67 Copynumber: 2.8 Consensus size: 64
6737169 AGACATTATG
* * *
6737179 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * *
6737243 ATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTA--TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
6737308 AA
63 AA
* * *
6737310 AT-TGGCTAGGTCACATGGGTGGTACTGA-GTGTTCACCATGT-GTACAAGAGAGC
1 ATGTAGCTAGGTCGCATGGGTGGTACT-ATGTGTACACCATGTAG-ACAAGAGAGC
6737363 CGAACTATAT
Statistics
Matches: 99, Mismatches: 16, Indels: 11
0.79 0.13 0.09
Matches are distributed among these distances:
62 1 0.01
63 19 0.19
64 25 0.25
66 21 0.21
67 33 0.33
ACGTcount: A:0.29, C:0.17, G:0.31, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:6739782 original size:46 final size:48
Alignment explanation
Indices: 6739715--6739838 Score: 150
Period size: 46 Copynumber: 2.6 Consensus size: 48
6739705 TGTAACCCAC
* *
6739715 CCATAAGTGAACTCAGACTCAACTCAACGAGCTCGG-GCGT-TTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGAGCCTATTACAT
*
6739761 CCATAAGTGAACTCGGACTCAACTCAACGGGCTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA-GCCTA-TTACAT
* *
6739811 -C-TCA-CGAACTCGGACTCAACTCAACGAG
1 CCATAAGTGAACTCGGACTCAACTCAACGAG
6739839 TTTGGAACTC
Statistics
Matches: 68, Mismatches: 6, Indels: 7
0.84 0.07 0.09
Matches are distributed among these distances:
46 34 0.50
47 22 0.32
48 5 0.07
49 1 0.01
50 6 0.09
ACGTcount: A:0.30, C:0.30, G:0.20, T:0.20
Consensus pattern (48 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGAGCCTATTACAT
Found at i:6740319 original size:30 final size:30
Alignment explanation
Indices: 6740270--6740329 Score: 84
Period size: 30 Copynumber: 2.0 Consensus size: 30
6740260 ATTTAATACG
*
6740270 AACTTTGGCAAAATCACATTTTTTCCCCTA
1 AACTTTGGCAAAATCACATTTTTGCCCCTA
* * *
6740300 AACTTTTGCATAATTACATTTTTGCCCCTA
1 AACTTTGGCAAAATCACATTTTTGCCCCTA
6740330 GGCTCGAGAA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.28, C:0.25, G:0.07, T:0.40
Consensus pattern (30 bp):
AACTTTGGCAAAATCACATTTTTGCCCCTA
Found at i:6747867 original size:30 final size:30
Alignment explanation
Indices: 6747822--6747881 Score: 102
Period size: 30 Copynumber: 2.0 Consensus size: 30
6747812 CATTTAATAC
6747822 AACTTTGGCAAAATTACATTTTTGCCCCTA
1 AACTTTGGCAAAATTACATTTTTGCCCCTA
* *
6747852 AACTTTTGCATAATTACATTTTTGCCCCTA
1 AACTTTGGCAAAATTACATTTTTGCCCCTA
6747882 GGCTTGGGAA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.28, C:0.23, G:0.08, T:0.40
Consensus pattern (30 bp):
AACTTTGGCAAAATTACATTTTTGCCCCTA
Found at i:6750281 original size:15 final size:15
Alignment explanation
Indices: 6750261--6750310 Score: 61
Period size: 15 Copynumber: 3.5 Consensus size: 15
6750251 CTTACTCGCA
6750261 CACATATATCGGAAT
1 CACATATATCGGAAT
*
6750276 CAC--ATATCGAGCA-
1 CACATATATCG-GAAT
6750289 CACATATATCGGAAT
1 CACATATATCGGAAT
6750304 CACATAT
1 CACATAT
6750311 CGATGCCAAC
Statistics
Matches: 29, Mismatches: 2, Indels: 8
0.74 0.05 0.21
Matches are distributed among these distances:
13 9 0.31
14 4 0.14
15 16 0.55
ACGTcount: A:0.40, C:0.24, G:0.12, T:0.24
Consensus pattern (15 bp):
CACATATATCGGAAT
Found at i:6750284 original size:13 final size:13
Alignment explanation
Indices: 6750266--6750312 Score: 51
Period size: 13 Copynumber: 3.5 Consensus size: 13
6750256 TCGCACACAT
6750266 ATATCGGAATCAC
1 ATATCGGAATCAC
*
6750279 ATATCGAGCACA-CAT
1 ATATCG-G-A-ATCAC
6750294 ATATCGGAATCAC
1 ATATCGGAATCAC
6750307 ATATCG
1 ATATCG
6750313 ATGCCAACAT
Statistics
Matches: 28, Mismatches: 2, Indels: 8
0.74 0.05 0.21
Matches are distributed among these distances:
12 1 0.04
13 15 0.54
14 2 0.07
15 9 0.32
16 1 0.04
ACGTcount: A:0.38, C:0.23, G:0.15, T:0.23
Consensus pattern (13 bp):
ATATCGGAATCAC
Found at i:6750298 original size:28 final size:28
Alignment explanation
Indices: 6750258--6750313 Score: 112
Period size: 28 Copynumber: 2.0 Consensus size: 28
6750248 GGTCTTACTC
6750258 GCACACATATATCGGAATCACATATCGA
1 GCACACATATATCGGAATCACATATCGA
6750286 GCACACATATATCGGAATCACATATCGA
1 GCACACATATATCGGAATCACATATCGA
6750314 TGCCAACATA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.39, C:0.25, G:0.14, T:0.21
Consensus pattern (28 bp):
GCACACATATATCGGAATCACATATCGA
Found at i:6750343 original size:84 final size:84
Alignment explanation
Indices: 6750202--6750369 Score: 300
Period size: 84 Copynumber: 2.0 Consensus size: 84
6750192 GGTCTTACTC
* * *
6750202 GCACACATATATCGGAGTGACATATCGATGCCAACGTATTAAACGTGGTCTTACTCGCACACATA
1 GCACACATATATCGGAATCACATATCGATGCCAACATATTAAACGTGGTCTTACTCGCACACATA
*
6750267 TATCGGAATCACATATCGA
66 TATCAGAATCACATATCGA
6750286 GCACACATATATCGGAATCACATATCGATGCCAACATATTAAACGTGGTCTTACTCGCACACATA
1 GCACACATATATCGGAATCACATATCGATGCCAACATATTAAACGTGGTCTTACTCGCACACATA
6750351 TATCAGAATCACATATCGA
66 TATCAGAATCACATATCGA
6750370 TGCCAACGTA
Statistics
Matches: 80, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
84 80 1.00
ACGTcount: A:0.35, C:0.24, G:0.15, T:0.25
Consensus pattern (84 bp):
GCACACATATATCGGAATCACATATCGATGCCAACATATTAAACGTGGTCTTACTCGCACACATA
TATCAGAATCACATATCGA
Found at i:6750352 original size:56 final size:56
Alignment explanation
Indices: 6750286--6750506 Score: 345
Period size: 56 Copynumber: 4.0 Consensus size: 56
6750276 CACATATCGA
* *
6750286 GCACACATATATCGGAATCACATATCGATGCCAACATATTAAACGTGGTCTTACTC
1 GCACACATATATCAGAATCACATATCGATGCCAACGTATTAAACGTGGTCTTACTC
** *
6750342 GCACACATATATCAGAATCACATATCGATGCCAACGTATTAAGTGTGGCCTTACT-
1 GCACACATATATCAGAATCACATATCGATGCCAACGTATTAAACGTGGTCTTACTC
** * *
6750397 TTACACATATATCGGAATCACATATCGATGCCAACGTATTGAACGTGGTCTTACTC
1 GCACACATATATCAGAATCACATATCGATGCCAACGTATTAAACGTGGTCTTACTC
*
6750453 GCACACATATATCAGAATCACATATCGATGCCAACGTATTAAACGTGCTCTTAC
1 GCACACATATATCAGAATCACATATCGATGCCAACGTATTAAACGTGGTCTTAC
6750507 ACATCATCAA
Statistics
Matches: 147, Mismatches: 17, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
55 48 0.33
56 99 0.67
ACGTcount: A:0.33, C:0.24, G:0.15, T:0.28
Consensus pattern (56 bp):
GCACACATATATCAGAATCACATATCGATGCCAACGTATTAAACGTGGTCTTACTC
Found at i:6750482 original size:111 final size:111
Alignment explanation
Indices: 6750288--6750494 Score: 396
Period size: 111 Copynumber: 1.9 Consensus size: 111
6750278 CATATCGAGC
6750288 ACACATATATCGGAATCACATATCGATGCCAACATATTAAACGTGGTCTTACTCGCACACATATA
1 ACACATATATCGGAATCACATATCGATGCCAACATATTAAACGTGGTCTTACTCGCACACATATA
6750353 TCAGAATCACATATCGATGCCAACGTATTAAGTGTGGCCTTACTTT
66 TCAGAATCACATATCGATGCCAACGTATTAAGTGTGGCCTTACTTT
* *
6750399 ACACATATATCGGAATCACATATCGATGCCAACGTATTGAACGTGGTCTTACTCGCACACATATA
1 ACACATATATCGGAATCACATATCGATGCCAACATATTAAACGTGGTCTTACTCGCACACATATA
6750464 TCAGAATCACATATCGATGCCAACGTATTAA
66 TCAGAATCACATATCGATGCCAACGTATTAA
6750495 ACGTGCTCTT
Statistics
Matches: 94, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
111 94 1.00
ACGTcount: A:0.34, C:0.24, G:0.14, T:0.28
Consensus pattern (111 bp):
ACACATATATCGGAATCACATATCGATGCCAACATATTAAACGTGGTCTTACTCGCACACATATA
TCAGAATCACATATCGATGCCAACGTATTAAGTGTGGCCTTACTTT
Found at i:6753210 original size:37 final size:36
Alignment explanation
Indices: 6753152--6753228 Score: 136
Period size: 37 Copynumber: 2.1 Consensus size: 36
6753142 AATAATTCAA
*
6753152 ATGATACAACATTTGTTCAGTTTGATGGTTTGCAGG
1 ATGATACAACATTTGTTCAGTTTGATGATTTGCAGG
6753188 ATGATACAACAGTTTGTTCAGTTTGATGATTTGCAGG
1 ATGATACAACA-TTTGTTCAGTTTGATGATTTGCAGG
6753225 ATGA
1 ATGA
6753229 GGATCCAAAT
Statistics
Matches: 39, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
36 11 0.28
37 28 0.72
ACGTcount: A:0.27, C:0.10, G:0.25, T:0.38
Consensus pattern (36 bp):
ATGATACAACATTTGTTCAGTTTGATGATTTGCAGG
Found at i:6761276 original size:93 final size:93
Alignment explanation
Indices: 6761164--6761334 Score: 299
Period size: 93 Copynumber: 1.8 Consensus size: 93
6761154 GCCCATAAGA
* *
6761164 GAACTCGGACTCAACTCAACGAGCTCAGG-CGTTCGCATCCATAAGTGAACTCGGACTCGACTCA
1 GAACTCGGACTCAACTCAACGAGCTC-GGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
6761228 ACGAGTTCGGATGCCTAGTTACATCTCAC
65 ACGAGTTCGGATGCCTAGTTACATCTCAC
*
6761257 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
6761322 CGAGTTCGGATGC
66 CGAGTTCGGATGC
6761335 TCAATCATCC
Statistics
Matches: 74, Mismatches: 3, Indels: 2
0.94 0.04 0.03
Matches are distributed among these distances:
92 2 0.03
93 72 0.97
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:6761329 original size:46 final size:46
Alignment explanation
Indices: 6761156--6761331 Score: 200
Period size: 46 Copynumber: 3.8 Consensus size: 46
6761146 TGTAACCCGC
* * *
6761156 CCATAAGAGAACTCGGACTCAACTCAACGAGCTCAGG-CGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTC-GGACATTCGCAT
* *
6761202 CCATAAGTGAACTCGGACTCGACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
* *
6761252 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
6761295 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
6761332 TGCTCAATCA
Statistics
Matches: 109, Mismatches: 11, Indels: 20
0.78 0.08 0.14
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 4 0.04
46 60 0.55
47 28 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.30, C:0.29, G:0.21, T:0.20
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:6765456 original size:85 final size:85
Alignment explanation
Indices: 6765313--6765576 Score: 510
Period size: 85 Copynumber: 3.1 Consensus size: 85
6765303 GGCCGGCCAT
6765313 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
1 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
6765378 GTAAGAATTAATAAAATAAA
66 GTAAGAATTAATAAAATAAA
6765398 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
1 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
6765463 GTAAGAATTAATAAAATAAA
66 GTAAGAATTAATAAAATAAA
6765483 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
1 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
*
6765548 GTAAGGATTAATAAAATAAA
66 GTAAGAATTAATAAAATAAA
*
6765568 GGGCATGGG
1 GAGCATGGG
6765577 CAATAAAATA
Statistics
Matches: 177, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
85 177 1.00
ACGTcount: A:0.39, C:0.08, G:0.27, T:0.27
Consensus pattern (85 bp):
GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
GTAAGAATTAATAAAATAAA
Found at i:6765482 original size:41 final size:41
Alignment explanation
Indices: 6765352--6765482 Score: 92
Period size: 41 Copynumber: 3.1 Consensus size: 41
6765342 AAAACATGTC
6765352 ATAAACATGTTGGGGTAGTGCATTATGTAAGAATTAATAAA
1 ATAAACATGTTGGGGTAGTGCATTATGTAAGAATTAATAAA
* *** ***
6765393 ATAAAGAGCATGGGTGGACAAGATG--TTATGGCTAA-AA--ACATGTC
1 AT-AA-A-CAT-GTTGGGGTAG-TGCATTAT-G-TAAGAATTA-ATAAA
6765437 ATAAACATGTTGGGGTAGTGCATTATGTAAGAATTAATAAA
1 ATAAACATGTTGGGGTAGTGCATTATGTAAGAATTAATAAA
6765478 ATAAA
1 ATAAA
6765483 GAGCATGGGT
Statistics
Matches: 63, Mismatches: 14, Indels: 26
0.61 0.14 0.25
Matches are distributed among these distances:
39 5 0.08
40 9 0.14
41 16 0.25
42 4 0.06
43 4 0.06
44 11 0.17
45 9 0.14
46 5 0.08
ACGTcount: A:0.42, C:0.07, G:0.23, T:0.28
Consensus pattern (41 bp):
ATAAACATGTTGGGGTAGTGCATTATGTAAGAATTAATAAA
Found at i:6766895 original size:47 final size:47
Alignment explanation
Indices: 6766841--6767247 Score: 611
Period size: 47 Copynumber: 8.6 Consensus size: 47
6766831 TATTTGAATA
* * **
6766841 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCTGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
6766888 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
6766935 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTGATG
6766984 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
6767031 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
6767080 AATGTGAACA-TGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
6767127 AATGTGAACA-TGCATATATGAGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
6767174 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* * *
6767221 GATGTGGAAGTGTATAAATGTGATAAG
1 AATGTGAAAGTGTATATATGTGATAAG
6767248 TCTCGAAGGG
Statistics
Matches: 339, Mismatches: 15, Indels: 12
0.93 0.04 0.03
Matches are distributed among these distances:
46 1 0.00
47 245 0.72
49 92 0.27
50 1 0.00
ACGTcount: A:0.34, C:0.08, G:0.29, T:0.29
Consensus pattern (47 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
Found at i:6766967 original size:96 final size:96
Alignment explanation
Indices: 6766841--6767247 Score: 614
Period size: 96 Copynumber: 4.3 Consensus size: 96
6766831 TATTTGAATA
* * **
6766841 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATAGCTGATGTGATGAATGTGAAAGTGTATA
1 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATA
* *
6766904 TATGTGATAAGGCCTAATGGCCGATGTGATG
66 TATGTGATAAGGCCGAATGGCCAATGTGATG
* *
6766935 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
1 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATA
6767000 TATGTGATAAGGCCGAATGGCCAATGTGATG
66 TATGTGATAAGGCCGAATGGCCAATGTGATG
*
6767031 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA-TGTGT
1 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAA-AGTGTAT
*
6767095 ATGTGTGATAAGGCCGAATGGCCAATGTGATG
65 ATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
6767127 AATGTGAACA-TG--CATATATGAGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTAT
1 AATGTGAA-AGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTAT
6767189 ATATGTGATAAGGCCGAATGGCCAATGTGATG
65 ATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
6767221 GATGTGGAAGTGTATA-A-ATGTGATAAG
1 AATGTGAAAGTGTATATATATGTGATAAG
6767248 TCTCGAAGGG
Statistics
Matches: 289, Mismatches: 16, Indels: 16
0.90 0.05 0.05
Matches are distributed among these distances:
93 2 0.01
94 105 0.36
95 1 0.00
96 179 0.62
97 2 0.01
ACGTcount: A:0.34, C:0.08, G:0.29, T:0.29
Consensus pattern (96 bp):
AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATA
TATGTGATAAGGCCGAATGGCCAATGTGATG
Found at i:6767027 original size:143 final size:143
Alignment explanation
Indices: 6766841--6767247 Score: 610
Period size: 143 Copynumber: 2.9 Consensus size: 143
6766831 TATTTGAATA
* * **
6766841 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCTGATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATA
* * *
6766906 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAAT
66 TGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCGAAT
*
6766971 GGCCGATGTGATG
131 GGCCAATGTGATG
6766984 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG--TATA
* *
6767049 TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA-TG--TGTATGTGTGATAAGGCCG
64 TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAA-AGTGTATATATATGTGATAAGGCCG
6767111 AATGGCCAATGTGATG
128 AATGGCCAATGTGATG
* *
6767127 AATGTGAACA-TGCATATATGAGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATAT
1 AATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATAT
* *
6767191 ATGTGATAAGGCCGAATGGCCAATGTGATGGATGTGGAAGTGTATA-A-ATGTGATAAG
65 ATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAG
6767248 TCTCGAAGGG
Statistics
Matches: 241, Mismatches: 16, Indels: 16
0.88 0.06 0.06
Matches are distributed among these distances:
140 1 0.00
141 52 0.22
142 1 0.00
143 142 0.59
144 1 0.00
145 43 0.18
146 1 0.00
ACGTcount: A:0.34, C:0.08, G:0.29, T:0.29
Consensus pattern (143 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATA
TGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCGAAT
GGCCAATGTGATG
Found at i:6770150 original size:54 final size:54
Alignment explanation
Indices: 6769941--6770150 Score: 180
Period size: 55 Copynumber: 3.9 Consensus size: 54
6769931 TATCTTTCCT
* * * *
6769941 TTTTA-AACTTACCATTGCCAT--CTCGACATGGTCCTACGTGGTATCCTTGCC
1 TTTTATAACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCC
* * * * *
6769992 --TTATGAACTCACCATTGCCATGCCTTGGCATGGTCTTACATGGGA-CCTTTACC
1 TTTTAT-AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCC-TTGCC
* ** * * * * *
6770045 TTATAGTAGTTTATCAATGCCTTGTCTTGACATGGTCTTACATGATTTCCTTGCC
1 TTTTA-TAACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCC
* *
6770100 TTTTATAACTTACCAATGCCATGCCTTGGCATGGTCTTACTTGGTATCCTT
1 TTTTATAACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTT
6770151 AAACCCTAAT
Statistics
Matches: 120, Mismatches: 30, Indels: 15
0.73 0.18 0.09
Matches are distributed among these distances:
49 3 0.03
51 15 0.12
52 2 0.02
53 21 0.17
54 37 0.31
55 39 0.32
56 3 0.03
ACGTcount: A:0.20, C:0.25, G:0.17, T:0.38
Consensus pattern (54 bp):
TTTTATAACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCC
Found at i:6782130 original size:79 final size:81
Alignment explanation
Indices: 6782019--6782202 Score: 186
Period size: 79 Copynumber: 2.3 Consensus size: 81
6782009 GCTCCTCGTT
* * * * *
6782019 CAAATGCCTTCGAGACATAGCCCGG-TTATAGTAAT-TCGGACTAATGCCTTCGGGA-CTTAACC
1 CAAATGCCTTCG-GGCTTAGCCCGGAATATAGT-ATCTCGCACAAATGCCTTC-GGATCTTAACC
*
6782081 CGGAT-TTAGTAAC-TCGCA
63 CGGATATT-GTAACTTAGCA
**
6782099 CAAATGCCTTCGGGCTTAGCCCGGAAT-TAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCGG
1 CAAATGCCTTCGGGCTTAGCCCGGAATATAGTATCTCGCACAAATGCCTTCGGATCTTAACCCGG
*
6782163 ATATTGTCACTTAGCA
66 ATATTGTAACTTAGCA
6782179 C-AA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGG-CTTAGCCCGGA
6782203 CATCATTCAA
Statistics
Matches: 89, Mismatches: 9, Indels: 13
0.80 0.08 0.12
Matches are distributed among these distances:
78 14 0.16
79 55 0.62
80 20 0.22
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (81 bp):
CAAATGCCTTCGGGCTTAGCCCGGAATATAGTATCTCGCACAAATGCCTTCGGATCTTAACCCGG
ATATTGTAACTTAGCA
Found at i:6782136 original size:39 final size:39
Alignment explanation
Indices: 6782019--6782202 Score: 164
Period size: 40 Copynumber: 4.7 Consensus size: 39
6782009 GCTCCTCGTT
* * * * *
6782019 CAAATGCCTTCGAGACATAGCCCGG-TTATAGTAATTCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGT-ACTCGCA
* * *
6782059 CTAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGT-ACTCGCA
6782099 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTA-CTCGCA
* *
6782138 CAAATGCCTTC-GGATCTTAGTCCGGATATT-GTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGA-ATTAGT-AC-TCGCA
6782179 C-AA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
6782203 CATCATTCAA
Statistics
Matches: 124, Mismatches: 12, Indels: 17
0.81 0.08 0.11
Matches are distributed among these distances:
38 3 0.02
39 48 0.39
40 62 0.50
41 11 0.09
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (39 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTACTCGCA
Found at i:6796069 original size:138 final size:138
Alignment explanation
Indices: 6795821--6796095 Score: 523
Period size: 138 Copynumber: 2.0 Consensus size: 138
6795811 AAAGGAAACA
*
6795821 GGGTAAGCACTTTGTGCTTAGTAAGCTCATGTAACAAGAATTATACTTACCTAATATTTTCAATA
1 GGGTAAGCACTTCGTGCTTAGTAAGCTCATGTAACAAGAATTATACTTACCTAATATTTTCAATA
6795886 CAATACAATAAACATTCATATATCCATTCAATGCATTATTACCCTAACATGCACAAACTCAACAT
66 CAATACAATAAACATTCATATATCCATTCAATGCATTATTACCCTAACATGCACAAACTCAACAT
6795951 TCAAGTTG
131 TCAAGTTG
*
6795959 GGGTAAGCACTTCGTGCTTAGTAGGCTCATGTAACAAGAATTATACTTACCTAATATTTTCAATA
1 GGGTAAGCACTTCGTGCTTAGTAAGCTCATGTAACAAGAATTATACTTACCTAATATTTTCAATA
*
6796024 CGATACAATAAACATTCATATATCCATTCAATGCATTATTACCCTAACATGCACAAACTCAACAT
66 CAATACAATAAACATTCATATATCCATTCAATGCATTATTACCCTAACATGCACAAACTCAACAT
6796089 TCAAGTT
131 TCAAGTT
6796096 AGTACAATAA
Statistics
Matches: 134, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
138 134 1.00
ACGTcount: A:0.37, C:0.21, G:0.11, T:0.32
Consensus pattern (138 bp):
GGGTAAGCACTTCGTGCTTAGTAAGCTCATGTAACAAGAATTATACTTACCTAATATTTTCAATA
CAATACAATAAACATTCATATATCCATTCAATGCATTATTACCCTAACATGCACAAACTCAACAT
TCAAGTTG
Found at i:6798358 original size:40 final size:40
Alignment explanation
Indices: 6798303--6798420 Score: 218
Period size: 40 Copynumber: 3.0 Consensus size: 40
6798293 GGAAAAAAAA
6798303 TATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTAT
1 TATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTAT
6798343 TATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTAT
1 TATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTAT
* *
6798383 TATAACCGGGTTAAGTCCCGAAGGCATTTGTGCTGGTT
1 TATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTT
6798421 GTTACATCCG
Statistics
Matches: 76, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
40 76 1.00
ACGTcount: A:0.22, C:0.19, G:0.30, T:0.29
Consensus pattern (40 bp):
TATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTAT
Found at i:6800206 original size:497 final size:497
Alignment explanation
Indices: 6799272--6800273 Score: 1932
Period size: 497 Copynumber: 2.0 Consensus size: 497
6799262 TTAAATAATG
*
6799272 AATAAATTATGTAATCGAATCTTGATGAGTCTATTTTCATATGAAAGAAACGAAACGACCATATG
1 AATAAATTATGTAATCGAATCTTGATGAGTCTATTTTCATATGAAAGAAACGAAACGACAATATG
*
6799337 AGCCGTATTTTATGAGATGTTTAAGTTTTCGTGAAAAAGGGCCAGAACGATTTCTAGATCCCCTG
66 AGCCGTATTTTATGAGATGTTTAAATTTTCGTGAAAAAGGGCCAGAACGATTTCTAGATCCCCTG
6799402 TTCTGATTTTGGAAATTCACCATAAATTAACCAGAGATAATTAGAAGTCATTCTTTATATGTACA
131 TTCTGATTTTGGAAATTCACCATAAATTAACCAGAGATAATTAGAAGTCATTCTTTATATGTACA
6799467 GATTCCTTTTTTAGTCTAGTTTCATTAGAAACAAACAGCATAAGTATTGAAGCCCTGTACAGGGA
196 GATTCCTTTTTTAGTCTAGTTTCATTAGAAACAAACAGCATAAGTATTGAAGCCCTGTACAGGGA
6799532 GATATCTAAGTCGTAATGCATGAAGGTCAGAGTAGTCGAACCCTGAAACAGGGGAGAATTTAACT
261 GATATCTAAGTCGTAATGCATGAAGGTCAGAGTAGTCGAACCCTGAAACAGGGGAGAATTTAACT
6799597 AATAAACTGTACTAATTGTCCTGACCAAAAATTCTACAAAAAAATTAGTAAATATATGTATGAGT
326 AATAAACTGTACTAATTGTCCTGACCAAAAATTCTACAAAAAAATTAGTAAATATATGTATGAGT
6799662 CTAGTTTTAGGAAAAATTTACGGAATTGGATTTCGAGTTTTGAAACTCGAGATATGATTTTTAGA
391 CTAGTTTTAGGAAAAATTTACGGAATTGGATTTCGAGTTTTGAAACTCGAGATATGATTTTTAGA
6799727 GTGACTATGATGCAGTTAGCCAGCTCGTCTGGAAATTTTAAA
456 GTGACTATGATGCAGTTAGCCAGCTCGTCTGGAAATTTTAAA
6799769 AATAAATTATGTAATCGAATCTTGATGAGTCTATTTTCATATGAAAGAAACGAAACGACAATATG
1 AATAAATTATGTAATCGAATCTTGATGAGTCTATTTTCATATGAAAGAAACGAAACGACAATATG
* *
6799834 AGCCGTATTTTATGAGATGTTTAAATTTTCGTGAAAAAGGGCCAGAGCGATTTCTGGATCCCCTG
66 AGCCGTATTTTATGAGATGTTTAAATTTTCGTGAAAAAGGGCCAGAACGATTTCTAGATCCCCTG
6799899 TTCTGATTTTGGAAATTCACCATAAATTAACCAGAGATAATTAGAAGTCATTCTTTATATGTACA
131 TTCTGATTTTGGAAATTCACCATAAATTAACCAGAGATAATTAGAAGTCATTCTTTATATGTACA
6799964 GATTCCTTTTTTAGTCTAGTTTCATTAGAAACAAACAGCATAAGTATTGAAGCCCTGTACAGGGA
196 GATTCCTTTTTTAGTCTAGTTTCATTAGAAACAAACAGCATAAGTATTGAAGCCCTGTACAGGGA
*
6800029 GATATCTAAGTCGTAATGCATGAAGGTCAGAGTAGTCGAACCCTGAAACAGGGGAGACTTTAACT
261 GATATCTAAGTCGTAATGCATGAAGGTCAGAGTAGTCGAACCCTGAAACAGGGGAGAATTTAACT
*
6800094 AATAAACTGTACTAATTGTCCTGACCAAAAATTCTAGAAAAAAATTAGTAAATATATGTATGAGT
326 AATAAACTGTACTAATTGTCCTGACCAAAAATTCTACAAAAAAATTAGTAAATATATGTATGAGT
6800159 CTAGTTTTAGGAAAAATTTACGGAATTGGATTTCGAGTTTTGAAACTCGAGATATGATTTTTAGA
391 CTAGTTTTAGGAAAAATTTACGGAATTGGATTTCGAGTTTTGAAACTCGAGATATGATTTTTAGA
*
6800224 GTGACTGTGATGCAGTTAGCCAGCTCGTCTGGAAATTTTAAA
456 GTGACTATGATGCAGTTAGCCAGCTCGTCTGGAAATTTTAAA
*
6800266 AATGAATT
1 AATAAATT
6800274 GTATGAGCTG
Statistics
Matches: 497, Mismatches: 8, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
497 497 1.00
ACGTcount: A:0.35, C:0.14, G:0.19, T:0.32
Consensus pattern (497 bp):
AATAAATTATGTAATCGAATCTTGATGAGTCTATTTTCATATGAAAGAAACGAAACGACAATATG
AGCCGTATTTTATGAGATGTTTAAATTTTCGTGAAAAAGGGCCAGAACGATTTCTAGATCCCCTG
TTCTGATTTTGGAAATTCACCATAAATTAACCAGAGATAATTAGAAGTCATTCTTTATATGTACA
GATTCCTTTTTTAGTCTAGTTTCATTAGAAACAAACAGCATAAGTATTGAAGCCCTGTACAGGGA
GATATCTAAGTCGTAATGCATGAAGGTCAGAGTAGTCGAACCCTGAAACAGGGGAGAATTTAACT
AATAAACTGTACTAATTGTCCTGACCAAAAATTCTACAAAAAAATTAGTAAATATATGTATGAGT
CTAGTTTTAGGAAAAATTTACGGAATTGGATTTCGAGTTTTGAAACTCGAGATATGATTTTTAGA
GTGACTATGATGCAGTTAGCCAGCTCGTCTGGAAATTTTAAA
Found at i:6811508 original size:31 final size:31
Alignment explanation
Indices: 6811470--6811533 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
6811460 CCTTTTCATA
6811470 TTTCATATTGCATAGCACTGGGCCGAAGCCT
1 TTTCATATTGCATAGCACTGGGCCGAAGCCT
* **
6811501 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTGCATAGCACTGGGCCGAAGCCT
6811532 TT
1 TT
6811534 CGTTTAACAG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.22, C:0.23, G:0.19, T:0.36
Consensus pattern (31 bp):
TTTCATATTGCATAGCACTGGGCCGAAGCCT
Found at i:6811784 original size:24 final size:26
Alignment explanation
Indices: 6811744--6811849 Score: 134
Period size: 26 Copynumber: 4.3 Consensus size: 26
6811734 CTGGAGGCCT
*
6811744 AGCCTCTTTT-AAT-AACTGGGGTA-A
1 AGCC-CTTTTCAATAAACTGGGGCATA
* *
6811768 AGCCCTTTT-GATAAACT-GGGTA-A
1 AGCCCTTTTCAATAAACTGGGGCATA
6811791 AGCCCTTTTCAATAAACTGGGGCATA
1 AGCCCTTTTCAATAAACTGGGGCATA
6811817 AGCCCTTTTCAATAAACTGGGGCATA
1 AGCCCTTTTCAATAAACTGGGGCATA
6811843 AGCCCTT
1 AGCCCTT
6811850 CTGCACTTCC
Statistics
Matches: 75, Mismatches: 3, Indels: 6
0.89 0.04 0.07
Matches are distributed among these distances:
23 22 0.29
24 15 0.20
25 4 0.05
26 34 0.45
ACGTcount: A:0.29, C:0.22, G:0.20, T:0.29
Consensus pattern (26 bp):
AGCCCTTTTCAATAAACTGGGGCATA
Found at i:6811926 original size:20 final size:19
Alignment explanation
Indices: 6811897--6811967 Score: 90
Period size: 20 Copynumber: 3.6 Consensus size: 19
6811887 GCATTTATGA
6811897 ATAC-ATCATGTGCATTTC
1 ATACAATCATGTGCATTTC
*
6811915 ATACATATCATGTGCATTTT
1 ATACA-ATCATGTGCATTTC
*
6811935 ATACAAATCATGTGCATATC
1 ATAC-AATCATGTGCATTTC
6811955 ATATCAATCATGT
1 ATA-CAATCATGT
6811968 ATATCATATC
Statistics
Matches: 46, Mismatches: 3, Indels: 6
0.84 0.05 0.11
Matches are distributed among these distances:
18 4 0.09
20 40 0.87
21 2 0.04
ACGTcount: A:0.34, C:0.18, G:0.10, T:0.38
Consensus pattern (19 bp):
ATACAATCATGTGCATTTC
Found at i:6811973 original size:18 final size:19
Alignment explanation
Indices: 6811901--6811977 Score: 61
Period size: 20 Copynumber: 3.9 Consensus size: 19
6811891 TTATGAATAC
*
6811901 ATCATGTGCATTTCATA-CA
1 ATCATGT-CATATCATATCA
* *
6811920 TATCATGTGCATTTTATA-CAA
1 -ATCATGT-CATATCATATC-A
6811941 ATCATGTGCATATCATATCA
1 ATCATGT-CATATCATATCA
6811961 ATCATGT-ATATCATATC
1 ATCATGTCATATCATATC
6811978 CCACGTATCA
Statistics
Matches: 52, Mismatches: 3, Indels: 6
0.85 0.05 0.10
Matches are distributed among these distances:
18 10 0.19
20 40 0.77
21 2 0.04
ACGTcount: A:0.34, C:0.18, G:0.09, T:0.39
Consensus pattern (19 bp):
ATCATGTCATATCATATCA
Found at i:6815612 original size:22 final size:22
Alignment explanation
Indices: 6815587--6815630 Score: 88
Period size: 22 Copynumber: 2.0 Consensus size: 22
6815577 ATAAGCGACC
6815587 ACCTTACCCTCTTGCATCAACA
1 ACCTTACCCTCTTGCATCAACA
6815609 ACCTTACCCTCTTGCATCAACA
1 ACCTTACCCTCTTGCATCAACA
6815631 CGCAGCCCAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.27, C:0.41, G:0.05, T:0.27
Consensus pattern (22 bp):
ACCTTACCCTCTTGCATCAACA
Found at i:6819564 original size:31 final size:34
Alignment explanation
Indices: 6819529--6819597 Score: 90
Period size: 34 Copynumber: 2.1 Consensus size: 34
6819519 CCCCTTTCAG
*
6819529 AGCCCAAAA-CAATAT-AAGCT-TACTGGGCCAA
1 AGCCCAAAACCAATATCAAGATATACTGGGCCAA
* *
6819560 AGCCCAAAACCAATCTCAATATATACTGGGCCAA
1 AGCCCAAAACCAATATCAAGATATACTGGGCCAA
6819594 AGCC
1 AGCC
6819598 TTTTCATATT
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
31 9 0.28
32 5 0.16
33 3 0.09
34 15 0.47
ACGTcount: A:0.41, C:0.29, G:0.14, T:0.16
Consensus pattern (34 bp):
AGCCCAAAACCAATATCAAGATATACTGGGCCAA
Found at i:6819644 original size:31 final size:31
Alignment explanation
Indices: 6819606--6819669 Score: 94
Period size: 31 Copynumber: 2.1 Consensus size: 31
6819596 CCTTTTCATA
6819606 TTTCATATTGT-ATAACACTGGGCCGAAGCCT
1 TTTCATATT-TCATAACACTGGGCCGAAGCCT
**
6819637 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTTCATAACACTGGGCCGAAGCCT
6819668 TT
1 TT
6819670 CGTTTAATGG
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
30 1 0.03
31 29 0.97
ACGTcount: A:0.23, C:0.22, G:0.17, T:0.38
Consensus pattern (31 bp):
TTTCATATTTCATAACACTGGGCCGAAGCCT
Found at i:6819888 original size:24 final size:26
Alignment explanation
Indices: 6819843--6819949 Score: 152
Period size: 26 Copynumber: 4.3 Consensus size: 26
6819833 CTGGAGGCCT
6819843 AGCCTCTTTT-AAT-AACTGGGGCA-A
1 AGCC-CTTTTCAATAAACTGGGGCATA
* *
6819867 AACCCTTTT-GATAAACTGGGGCA-A
1 AGCCCTTTTCAATAAACTGGGGCATA
6819891 AGCCCTTTTCAATAAACTGGGGCATA
1 AGCCCTTTTCAATAAACTGGGGCATA
6819917 AGCCCTTTTCAATAAACTGGGGCATA
1 AGCCCTTTTCAATAAACTGGGGCATA
6819943 AGCCCTT
1 AGCCCTT
6819950 CTGCACTTCC
Statistics
Matches: 76, Mismatches: 4, Indels: 4
0.90 0.05 0.05
Matches are distributed among these distances:
23 7 0.09
24 22 0.29
25 13 0.17
26 34 0.45
ACGTcount: A:0.30, C:0.23, G:0.20, T:0.27
Consensus pattern (26 bp):
AGCCCTTTTCAATAAACTGGGGCATA
Found at i:6820026 original size:20 final size:20
Alignment explanation
Indices: 6820001--6820067 Score: 100
Period size: 20 Copynumber: 3.4 Consensus size: 20
6819991 TTATGAATAC
6820001 ATCATGTGCATTTCATACAT
1 ATCATGTGCATTTCATACAT
*
6820021 ATCATGTGCATTTTATACAT
1 ATCATGTGCATTTCATACAT
*
6820041 ATCATGTGCATATCATATCA-
1 ATCATGTGCATTTCATA-CAT
6820061 ATCATGT
1 ATCATGT
6820068 ATAGCATATC
Statistics
Matches: 43, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
20 41 0.95
21 2 0.05
ACGTcount: A:0.31, C:0.18, G:0.10, T:0.40
Consensus pattern (20 bp):
ATCATGTGCATTTCATACAT
Found at i:6820131 original size:25 final size:25
Alignment explanation
Indices: 6820103--6820150 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
6820093 GTAATTAAAC
* * *
6820103 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAATAGTCATTTTTA
6820128 CCTAGGGGCAAAATAGTCATTTT
1 CCTAGGGGCAAAATAGTCATTTT
6820151 CATACTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.27, C:0.15, G:0.23, T:0.35
Consensus pattern (25 bp):
CCTAGGGGCAAAATAGTCATTTTTA
Found at i:6832025 original size:29 final size:29
Alignment explanation
Indices: 6831946--6832039 Score: 91
Period size: 29 Copynumber: 3.3 Consensus size: 29
6831936 TATCTGACCC
* * * * *
6831946 ATTAAGCCC-AATCATATTCATATTGCCC
1 ATTAGGCCCAAATCACATTTATATGGCCA
* * *
6831974 ATTTGGCCCAAATCACCTGTATATGGCCA
1 ATTAGGCCCAAATCACATTTATATGGCCA
*
6832003 ATTAGGCCCAAATCACATTTATATGGCCT
1 ATTAGGCCCAAATCACATTTATATGGCCA
*
6832032 CTTAGGCC
1 ATTAGGCC
6832040 TAGTCACAAT
Statistics
Matches: 52, Mismatches: 13, Indels: 1
0.79 0.20 0.02
Matches are distributed among these distances:
28 7 0.13
29 45 0.87
ACGTcount: A:0.29, C:0.28, G:0.14, T:0.30
Consensus pattern (29 bp):
ATTAGGCCCAAATCACATTTATATGGCCA
Found at i:6832321 original size:24 final size:24
Alignment explanation
Indices: 6832271--6832321 Score: 68
Period size: 24 Copynumber: 2.1 Consensus size: 24
6832261 ACTTTCAGCT
*
6832271 TTTCGACATTTCAGCTTTTCGGTA
1 TTTCGACATTTCAGCTTTTCCGTA
*
6832295 TTTCGTCATTTCAGCTTTTGCCG-A
1 TTTCGACATTTCAGCTTTT-CCGTA
6832319 TTT
1 TTT
6832322 ATAGTGTGTG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
24 22 0.92
25 2 0.08
ACGTcount: A:0.14, C:0.22, G:0.16, T:0.49
Consensus pattern (24 bp):
TTTCGACATTTCAGCTTTTCCGTA
Found at i:6833564 original size:16 final size:16
Alignment explanation
Indices: 6833543--6833574 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
6833533 AAGTTTAAGA
6833543 TTTTGGAATTTTTGGG
1 TTTTGGAATTTTTGGG
6833559 TTTTGGAATTTTTGGG
1 TTTTGGAATTTTTGGG
6833575 GCATTACAAC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.12, C:0.00, G:0.31, T:0.56
Consensus pattern (16 bp):
TTTTGGAATTTTTGGG
Found at i:6843283 original size:47 final size:47
Alignment explanation
Indices: 6843217--6843753 Score: 756
Period size: 47 Copynumber: 11.3 Consensus size: 47
6843207 GAAATGATAG
6843217 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
6843264 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
6843311 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
6843358 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGA
*
6843407 TAGGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGA
*
6843456 TAGGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* * * * * * * *
6843503 CAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATAAATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
6843550 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGA
* * * *
6843599 TAAGGCCGAATGGCCAATGTGATGAATGTGAACA-TGTGTATGTGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAA-AGTGTATATATGTGA
* * * *
6843646 TAAGGCCGAATGGCCAATGTGATGAATGTGAACA-TGCATATATGAGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAA-AGTGTATATATGTGA
* * * *
6843693 TAATGCCGAATGGCCAATGTGATGAATGTGAACA-TGTATATATGTGG
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAA-AGTGTATATATGTGA
* *
6843740 TAAGGTCGAATGGC
1 TAAGGCCTAATGGC
6843754 TAATGCGAAA
Statistics
Matches: 455, Mismatches: 30, Indels: 10
0.92 0.06 0.02
Matches are distributed among these distances:
47 317 0.70
49 137 0.30
50 1 0.00
ACGTcount: A:0.32, C:0.10, G:0.30, T:0.28
Consensus pattern (47 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
Found at i:6843496 original size:143 final size:142
Alignment explanation
Indices: 6843217--6843735 Score: 751
Period size: 143 Copynumber: 3.6 Consensus size: 142
6843207 GAAATGATAG
* *
6843217 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
1 TAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
6843282 GTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
66 GTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
6843345 TGTATATATGTGA
131 TG-ATATATGTGA
* * *
6843358 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAGGGCCTAATGGCCG
1 TAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCG
*
6843423 ATGTGATGAATGTGAAAGTGTATATATATGTGATAGGGCCTAATGGCCGATGTGATGAATGTGAA
64 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
6843488 AGTGTATATATGTGA
129 AGTG-ATATATGTGA
* * * * * *
6843503 CAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATAAATGTGATAAGGCCTAATGGCCGAT
1 TAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
* *
6843568 GTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA
66 GTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA-A
*
6843633 TGTG-TATGTGTGA
130 -GTGATATATGTGA
* * * * *
6843646 TAAGGCCGAATGGCCAATGTGATGAATGTGAACA-TGCATATATGAGATAATGCCGAATGGCCAA
1 TAAGGCCGAATGGCCAATGTGATGAATGTGAA-AGTGTATATATGTGATAAGGCCTAATGGCCGA
6843710 TGTGATGAATGTGAACA-TGTATATAT
65 TGTGATGAATGTGAA-AGTGTATATAT
6843736 GTGGTAAGGT
Statistics
Matches: 344, Mismatches: 26, Indels: 14
0.90 0.07 0.04
Matches are distributed among these distances:
141 36 0.10
143 216 0.63
144 3 0.01
145 89 0.26
ACGTcount: A:0.32, C:0.10, G:0.30, T:0.29
Consensus pattern (142 bp):
TAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
GTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
TGATATATGTGA
Found at i:6843868 original size:46 final size:46
Alignment explanation
Indices: 6843732--6843868 Score: 193
Period size: 46 Copynumber: 3.0 Consensus size: 46
6843722 GAACATGTAT
* * *
6843732 ATATGTGGTAAGGTCGAATGGCTAATGCGAAATGTGTATGAGATAG
1 ATATGTGGTAAAGCCGAATGGCTAATGCGAAATGTGTATGAGATGG
* *
6843778 ATATGAGGTAAAGCCGAATGGCTAATGCGAAACGTGTATGAGATGG
1 ATATGTGGTAAAGCCGAATGGCTAATGCGAAATGTGTATGAGATGG
* * * *
6843824 ATATGTGGTAAAGCCAAATGGCTAATGTGAGATATGTATGAGATG
1 ATATGTGGTAAAGCCGAATGGCTAATGCGAAATGTGTATGAGATG
6843869 TGTATATATA
Statistics
Matches: 80, Mismatches: 11, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
46 80 1.00
ACGTcount: A:0.34, C:0.08, G:0.31, T:0.26
Consensus pattern (46 bp):
ATATGTGGTAAAGCCGAATGGCTAATGCGAAATGTGTATGAGATGG
Found at i:6853304 original size:29 final size:28
Alignment explanation
Indices: 6853280--6853352 Score: 85
Period size: 28 Copynumber: 2.6 Consensus size: 28
6853270 TCGGGCTGGA
6853280 TGGGCCATATGAATGTGATTTGGGCCTAT
1 TGGGCCATATGAATGTGATTTGGG-CTAT
* *
6853309 TGGGCCATATGAATGAGA-TTGGGCCTAG
1 TGGGCCATATGAATGTGATTTGGG-CTAT
* *
6853337 TGGACCATATGCATGT
1 TGGGCCATATGAATGT
6853353 ACGTAGACTT
Statistics
Matches: 39, Mismatches: 5, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
28 22 0.56
29 17 0.44
ACGTcount: A:0.23, C:0.15, G:0.32, T:0.30
Consensus pattern (28 bp):
TGGGCCATATGAATGTGATTTGGGCTAT
Done.