Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr9
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 91122320
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2661692 characters in sequence are not A, C, G, or T
File 201 of 279
Found at i:65732200 original size:87 final size:90
Alignment explanation
Indices: 65732098--65732282 Score: 259
Period size: 96 Copynumber: 2.0 Consensus size: 90
65732088 TGATATATAT
*
65732098 TTATGTAAATTATATATTTATCTAAGTTATATAAG-T-TA-TGTAAGTTATGTAAATTATGATAT
1 TTATGTAAATTATATATTTATCTAAGTTATATAAGTTGTATTGTAAGTTATATAAATTATGATAT
65732160 AAAATATATTTAAGTATTATGTAAG
66 AAAATATATTTAAGTATTATGTAAG
*
65732185 TTATGTAAGTTATATATTTATCTAAGTTATATAAGTTATGTACGTTTTGTAAGTTATATAAATTA
1 TTATGTAAATTATATATTTATCTAAGTTATATAAG-T-TGTA----TTGTAAGTTATATAAATTA
* *
65732250 TGATATCAAATATATTTATGTATTATGTAAG
60 TGATATAAAATATATTTAAGTATTATGTAAG
65732281 TT
1 TT
65732283 TTTTATTTCA
Statistics
Matches: 85, Mismatches: 4, Indels: 9
0.87 0.04 0.09
Matches are distributed among these distances:
87 34 0.40
90 1 0.01
91 2 0.02
96 48 0.56
ACGTcount: A:0.38, C:0.02, G:0.12, T:0.48
Consensus pattern (90 bp):
TTATGTAAATTATATATTTATCTAAGTTATATAAGTTGTATTGTAAGTTATATAAATTATGATAT
AAAATATATTTAAGTATTATGTAAG
Found at i:65732238 original size:114 final size:114
Alignment explanation
Indices: 65732038--65732251 Score: 290
Period size: 114 Copynumber: 1.9 Consensus size: 114
65732028 ACTAGTTATG
* * * *
65732038 TATGATATGATATATATTTAAGTATTATGTAAGTTATGTAAGTTATGATATGATATATATTTATG
1 TATGATATAAAATATATTTAAGTATTATGTAAGTTATGTAAGTTATGATATGATATATAGTTATA
*
65732103 TAAATTATATATTTATCTAAGTTATATAAGTTATGTAAGTTATGTAAAT
66 TAAATTATATATTTATCTAAGTTATATAAATTATGTAAGTTATGTAAAT
* *
65732152 TATGATATAAAATATATTTAAGTATTATGTAAGTTATGTAAGTTAT-ATAT-TTATCTAAGTTAT
1 TATGATATAAAATATATTTAAGTATTATGTAAGTTATGTAAGTTATGATATGATATAT-AGTTAT
* * *
65732215 ATAAGTTATGTACGTTT-TGTAAGTTATATAAATTATG
65 ATAAATTATATA--TTTATCTAAGTTATATAAATTATG
65732252 ATATCAAATA
Statistics
Matches: 87, Mismatches: 10, Indels: 6
0.84 0.10 0.06
Matches are distributed among these distances:
112 4 0.05
113 18 0.21
114 62 0.71
115 3 0.03
ACGTcount: A:0.38, C:0.01, G:0.13, T:0.47
Consensus pattern (114 bp):
TATGATATAAAATATATTTAAGTATTATGTAAGTTATGTAAGTTATGATATGATATATAGTTATA
TAAATTATATATTTATCTAAGTTATATAAATTATGTAAGTTATGTAAAT
Found at i:65732290 original size:87 final size:87
Alignment explanation
Indices: 65732098--65732282 Score: 234
Period size: 87 Copynumber: 2.1 Consensus size: 87
65732088 TGATATATAT
*
65732098 TTATGTAAATTATATATTTATCTAAGTTATATAAGTTATGTAAGTTATGTAAATTATGATATAAA
1 TTATGTAAGTTATATATTTATCTAAGTTATATAAGTTATGTAAGTTATGTAAATTATGATATAAA
** *
65732163 ATATATTTAAGTATTATGTAAG
66 ATATATCAAAATATTATGTAAG
* * *
65732185 TTATGTAAGTTATATATTTATCTAAGTTATATAAGTTATGTACGTTTTGTAAGTTAT-ATA-AAT
1 TTATGTAAGTTATATATTTATCTAAGTTATATAAGTTATGTAAGTTATGTAAATTATGATATAA-
*
65732248 TATGATATCAAATATATTTATGT-A-
65 AAT-ATATCAAA-ATA-TTATGTAAG
65732272 TTATGTAAGTT
1 TTATGTAAGTT
65732283 TTTTATTTCA
Statistics
Matches: 86, Mismatches: 8, Indels: 8
0.84 0.08 0.08
Matches are distributed among these distances:
85 2 0.02
86 5 0.06
87 70 0.81
88 3 0.03
89 6 0.07
ACGTcount: A:0.38, C:0.02, G:0.12, T:0.48
Consensus pattern (87 bp):
TTATGTAAGTTATATATTTATCTAAGTTATATAAGTTATGTAAGTTATGTAAATTATGATATAAA
ATATATCAAAATATTATGTAAG
Found at i:65732376 original size:15 final size:15
Alignment explanation
Indices: 65732356--65732411 Score: 64
Period size: 15 Copynumber: 3.8 Consensus size: 15
65732346 AAGTAGCGGG
65732356 ATTAAATAATATTTA
1 ATTAAATAATATTTA
65732371 ATTAAATAATATTT-
1 ATTAAATAATATTTA
65732385 A-TAAA-AATTATTTTA
1 ATTAAATAA-TA-TTTA
*
65732400 ATTAAGTAATAT
1 ATTAAATAATAT
65732412 ACATGTCGTT
Statistics
Matches: 35, Mismatches: 1, Indels: 10
0.76 0.02 0.22
Matches are distributed among these distances:
12 2 0.06
13 6 0.17
14 4 0.11
15 16 0.46
16 5 0.14
17 2 0.06
ACGTcount: A:0.52, C:0.00, G:0.02, T:0.46
Consensus pattern (15 bp):
ATTAAATAATATTTA
Found at i:65733276 original size:357 final size:357
Alignment explanation
Indices: 65732621--65733500 Score: 1681
Period size: 357 Copynumber: 2.5 Consensus size: 357
65732611 ATAAAACGGA
*
65732621 GAATTTTTTAAGATTCATCATACGCT-GCATTGTTACACCTAGGGAGGATCCATTATATCTTGCA
1 GAATTTTTTAAGATTCATCATACG-TGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTGCA
65732685 GCTCGATATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAA
65 GCTCGATATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAA
*
65732750 TAAGGTTGGAGAGAAGGTCAGCCATTGTTGTAATTTTGATAAAAATTAGTTATAACTTTTAAAGA
130 TAAGGTTGGAGAGAAGGTCAACCATTGTTGTAATTTTGATAAAAATTAGTTATAACTTTTAAAGA
65732815 CATTTAAAAATATTAAATATTAAAATCAAACATTATTAATACAAAAAAATAGTAATTTGAATATA
195 CATTTAAAAATATTAAATATTAAAATCAAACATTATTAATACAAAAAAATAGTAATTTGAATATA
65732880 ATAATATAAAAAAGAATCGTAGTTTAATTTTTATAAGTAAATTGGAAATAAATATTCAATAGTAA
260 ATAATATAAAAAAGAATCGTAGTTTAATTTTTATAAGTAAATTGGAAATAAATATTCAATAGTAA
65732945 ATGAGCTCGATAGAACTTTTTTCAAGTCTTTTT
325 ATGAGCTCGATAGAACTTTTTTCAAGTCTTTTT
65732978 GAATTTTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTGCAG
1 GAATTTTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTGCAG
65733043 CTCGATATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAAT
66 CTCGATATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAAT
*
65733108 AAGGTTGGAGAGAAGGCCAACCATTGTTGTAATTTTGATAAAAATTAGTTATAACTTTTAAAGAC
131 AAGGTTGGAGAGAAGGTCAACCATTGTTGTAATTTTGATAAAAATTAGTTATAACTTTTAAAGAC
*
65733173 ATTTAAAAATATTAAATATTAAAATCAAACATTATTAATGCAAAAAAATAGTAATTTGAATATAA
196 ATTTAAAAATATTAAATATTAAAATCAAACATTATTAATACAAAAAAATAGTAATTTGAATATAA
65733238 TAATATAAAAAAGAATCGTAGTTTAATTTTTATAAGTAAATTGGAAATAAATATTCAATAGTAAA
261 TAATATAAAAAAGAATCGTAGTTTAATTTTTATAAGTAAATTGGAAATAAATATTCAATAGTAAA
65733303 TGAGCTCGATAGAACTTTTTTCAAGTCTTTTT
326 TGAGCTCGATAGAACTTTTTTCAAGTCTTTTT
65733335 GAATTTTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTGCAG
1 GAATTTTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTGCAG
*
65733400 CTCGATATAAGGCAACCTGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAAT
66 CTCGATATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAAT
* *
65733465 AAGGTTGGAGAGAAAGTCATCCATTGTTGTAATTTT
131 AAGGTTGGAGAGAAGGTCAACCATTGTTGTAATTTT
65733501 AATGGACAAG
Statistics
Matches: 514, Mismatches: 8, Indels: 2
0.98 0.02 0.00
Matches are distributed among these distances:
356 1 0.00
357 513 1.00
ACGTcount: A:0.38, C:0.12, G:0.15, T:0.35
Consensus pattern (357 bp):
GAATTTTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTGCAG
CTCGATATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAAT
AAGGTTGGAGAGAAGGTCAACCATTGTTGTAATTTTGATAAAAATTAGTTATAACTTTTAAAGAC
ATTTAAAAATATTAAATATTAAAATCAAACATTATTAATACAAAAAAATAGTAATTTGAATATAA
TAATATAAAAAAGAATCGTAGTTTAATTTTTATAAGTAAATTGGAAATAAATATTCAATAGTAAA
TGAGCTCGATAGAACTTTTTTCAAGTCTTTTT
Found at i:65733744 original size:15 final size:15
Alignment explanation
Indices: 65733724--65733752 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
65733714 AGAATTTTTA
65733724 AATAAAACGTACCTT
1 AATAAAACGTACCTT
65733739 AATAAAACGTACCT
1 AATAAAACGTACCT
65733753 GGTCTACTCC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.48, C:0.21, G:0.07, T:0.24
Consensus pattern (15 bp):
AATAAAACGTACCTT
Found at i:65734262 original size:183 final size:183
Alignment explanation
Indices: 65733954--65734322 Score: 686
Period size: 183 Copynumber: 2.0 Consensus size: 183
65733944 CCTAGAACAG
65733954 ATGTAAGATTATAAGAGTAGCACCAAATATATTTCAGTTTAAGCAAATATAAAATCTTTATCTAT
1 ATGTAAGATTATAAGAGTAGCACCAAATATATTTCAGTTTAAGCAAATATAAAATCTTTATCTAT
*
65734019 ATCAGTACCAAATATTAATTCGAAGATTAAATGGCAGCTTCAGTTGAACCAATAGTTGCAGGAGG
66 ATCAGTACCAAATATTAATTCGAAGATTAAATGGCAGCTTCAGTTGAACCAATAGTTGCAGGAGA
*
65734084 AGCAGGAAGCAGTAACTGAAATACATACAACATTAATTCACTAATACAGACAC
131 AGCAGGAAGCAGTAACTGAAACACATACAACATTAATTCACTAATACAGACAC
65734137 ATGTAAGATTATAAGAGTAGCACCAAATATATTTCAGTTTAAGCAAATATGAAAA-CTTTATCTA
1 ATGTAAGATTATAAGAGTAGCACCAAATATATTTCAGTTTAAGCAAATAT-AAAATCTTTATCTA
65734201 TATCAGTACCAAATATTAATTCGAAGATTAAATGGCAGCTTCAGTTGAACCAATAGTTGCAGGAG
65 TATCAGTACCAAATATTAATTCGAAGATTAAATGGCAGCTTCAGTTGAACCAATAGTTGCAGGAG
* *
65734266 AAGCAGGAAGCAGTAACTGAAACATATACAACATTAATTCACTAATATAGACAC
130 AAGCAGGAAGCAGTAACTGAAACACATACAACATTAATTCACTAATACAGACAC
65734320 ATG
1 ATG
65734323 GAACTATATC
Statistics
Matches: 181, Mismatches: 4, Indels: 2
0.97 0.02 0.01
Matches are distributed among these distances:
183 177 0.98
184 4 0.02
ACGTcount: A:0.42, C:0.15, G:0.15, T:0.27
Consensus pattern (183 bp):
ATGTAAGATTATAAGAGTAGCACCAAATATATTTCAGTTTAAGCAAATATAAAATCTTTATCTAT
ATCAGTACCAAATATTAATTCGAAGATTAAATGGCAGCTTCAGTTGAACCAATAGTTGCAGGAGA
AGCAGGAAGCAGTAACTGAAACACATACAACATTAATTCACTAATACAGACAC
Found at i:65734412 original size:14 final size:13
Alignment explanation
Indices: 65734393--65734422 Score: 51
Period size: 14 Copynumber: 2.2 Consensus size: 13
65734383 CAATATAATT
65734393 TTACTTCATATATA
1 TTACTTCATATA-A
65734407 TTACTTCATATAA
1 TTACTTCATATAA
65734420 TTA
1 TTA
65734423 TTATAGTAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 4 0.25
14 12 0.75
ACGTcount: A:0.37, C:0.13, G:0.00, T:0.50
Consensus pattern (13 bp):
TTACTTCATATAA
Found at i:65735003 original size:41 final size:41
Alignment explanation
Indices: 65734946--65735145 Score: 294
Period size: 41 Copynumber: 4.9 Consensus size: 41
65734936 TCCAACTGAT
65734946 TTTACCAAAAGCGCCGCTAATGCTCTTATTTTTAGCGGCGC
1 TTTACCAAAAGCGCCGCTAATGCTCTTATTTTTAGCGGCGC
* ** *
65734987 TTTACCAAAAGCGCCGCTATTGCTCCGATTTTTAGTGGCGC
1 TTTACCAAAAGCGCCGCTAATGCTCTTATTTTTAGCGGCGC
* * * *
65735028 TTTACCAAAAGCGTCACTAATGCTCTTATTTTTAGCGTCGT
1 TTTACCAAAAGCGCCGCTAATGCTCTTATTTTTAGCGGCGC
*
65735069 TTTACCAAAAGCGCCGCTAATGCTCTTATTTTTAGCGGCGT
1 TTTACCAAAAGCGCCGCTAATGCTCTTATTTTTAGCGGCGC
* *
65735110 TTTACCAAAAGCGCCGCTATTGCTC-TGTTTTTAGCG
1 TTTACCAAAAGCGCCGCTAATGCTCTTATTTTTAGCG
65735146 TCGTTTTTGG
Statistics
Matches: 142, Mismatches: 17, Indels: 1
0.89 0.11 0.01
Matches are distributed among these distances:
40 10 0.07
41 132 0.93
ACGTcount: A:0.21, C:0.25, G:0.19, T:0.34
Consensus pattern (41 bp):
TTTACCAAAAGCGCCGCTAATGCTCTTATTTTTAGCGGCGC
Found at i:65744172 original size:48 final size:47
Alignment explanation
Indices: 65744100--65744285 Score: 176
Period size: 48 Copynumber: 3.9 Consensus size: 47
65744090 GTAAGATGCC
* * *
65744100 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATAACAAAGCT
1 GATGCCATGT-CTAAACATGGTCTTACACTAGCTCACATAACAAAGCT
* * *** * *
65744148 GATGCCATGCTCTAAACATAGTCTTACATTAGCTCACATATTGAGGCC
1 GATGCCATG-TCTAAACATGGTCTTACACTAGCTCACATAACAAAGCT
* * * *
65744196 GATGCTATGTCCTAGACATGGTCTTACACTAGCTCTCGTAACAAAG-T
1 GATGCCATGT-CTAAACATGGTCTTACACTAGCTCACATAACAAAGCT
* *
65744243 CGATGCCATGTTCCAAACATGGTCTTACACTGGCTCACATAAC
1 -GATGCCATG-TCTAAACATGGTCTTACACTAGCTCACATAAC
65744286 CCTAGTATCA
Statistics
Matches: 107, Mismatches: 27, Indels: 8
0.75 0.19 0.06
Matches are distributed among these distances:
47 1 0.01
48 104 0.97
49 2 0.02
ACGTcount: A:0.28, C:0.27, G:0.17, T:0.27
Consensus pattern (47 bp):
GATGCCATGTCTAAACATGGTCTTACACTAGCTCACATAACAAAGCT
Found at i:65744261 original size:96 final size:96
Alignment explanation
Indices: 65744097--65744283 Score: 286
Period size: 96 Copynumber: 1.9 Consensus size: 96
65744087 AGGGTAAGAT
*
65744097 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATAACAAAGCTGATGCCATGCTCTA
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATAACAAAGCTGATGCCATGCTCCA
*
65744162 AACATAGTCTTACATTAGCTCACATATTGAG
66 AACATAGTCTTACACTAGCTCACATATTGAG
* * * *
65744193 GCCGATGCTATGTCCTAGACATGGTCTTACACTAGCTCTCGTAACAAAG-TCGATGCCATGTTCC
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATAACAAAGCT-GATGCCATGCTCC
* *
65744257 AAACATGGTCTTACACTGGCTCACATA
65 AAACATAGTCTTACACTAGCTCACATA
65744284 ACCCTAGTAT
Statistics
Matches: 82, Mismatches: 8, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
95 1 0.01
96 81 0.99
ACGTcount: A:0.28, C:0.27, G:0.18, T:0.27
Consensus pattern (96 bp):
GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATAACAAAGCTGATGCCATGCTCCA
AACATAGTCTTACACTAGCTCACATATTGAG
Found at i:65754545 original size:3 final size:3
Alignment explanation
Indices: 65754539--65754618 Score: 51
Period size: 3 Copynumber: 27.7 Consensus size: 3
65754529 ATTTTTTTAA
** *
65754539 AAT AAT AAT AAT AAT AA- AAT AGC AA- AGAC AA- AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT A-AT AAT AAT AAT AAT AAT
* * * * *
65754582 AAT GAT AAT AGT AAT AGT AAT AAC GAT AAT AA- AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
65754619 ATCATTTTTT
Statistics
Matches: 59, Mismatches: 13, Indels: 10
0.72 0.16 0.12
Matches are distributed among these distances:
2 7 0.12
3 51 0.86
4 1 0.02
ACGTcount: A:0.64, C:0.04, G:0.07, T:0.25
Consensus pattern (3 bp):
AAT
Found at i:65754738 original size:26 final size:26
Alignment explanation
Indices: 65754709--65754762 Score: 99
Period size: 26 Copynumber: 2.1 Consensus size: 26
65754699 GAAAAGTAGA
*
65754709 AAGGGTAAAATATTAAAATGATGTAT
1 AAGGGTAAAATATTAAAATAATGTAT
65754735 AAGGGTAAAATATTAAAATAATGTAT
1 AAGGGTAAAATATTAAAATAATGTAT
65754761 AA
1 AA
65754763 TAACTAAATA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.54, C:0.00, G:0.17, T:0.30
Consensus pattern (26 bp):
AAGGGTAAAATATTAAAATAATGTAT
Found at i:65754772 original size:26 final size:26
Alignment explanation
Indices: 65754714--65754770 Score: 69
Period size: 26 Copynumber: 2.2 Consensus size: 26
65754704 GTAGAAAGGG
* ***
65754714 TAAAATATTAAAATGATGTATAAGGG
1 TAAAATATTAAAATAATGTATAAAAC
65754740 TAAAATATTAAAATAATGTATAATAAC
1 TAAAATATTAAAATAATGTATAA-AAC
65754767 TAAA
1 TAAA
65754771 TAAATAAGGG
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
26 22 0.85
27 4 0.15
ACGTcount: A:0.56, C:0.02, G:0.11, T:0.32
Consensus pattern (26 bp):
TAAAATATTAAAATAATGTATAAAAC
Found at i:65757314 original size:9 final size:9
Alignment explanation
Indices: 65757288--65757316 Score: 51
Period size: 9 Copynumber: 3.3 Consensus size: 9
65757278 ACAAATAGGT
65757288 AAATAAATA
1 AAATAAATA
65757297 AAA-AAATA
1 AAATAAATA
65757305 AAATAAATA
1 AAATAAATA
65757314 AAA
1 AAA
65757317 CAGCTTGTAA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
8 8 0.42
9 11 0.58
ACGTcount: A:0.83, C:0.00, G:0.00, T:0.17
Consensus pattern (9 bp):
AAATAAATA
Found at i:65757422 original size:3 final size:3
Alignment explanation
Indices: 65757409--65757484 Score: 57
Period size: 3 Copynumber: 25.3 Consensus size: 3
65757399 AGATAACAAA
* * ** *
65757409 AAT AGT AAT AAT AAG AAT AAT AAT -AT GTT AAT AAT AAT AGA- GAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A-AT AAT
* *
65757453 AAT AAT AAA AGAT AAT AGT AAT AAT AAT AAT A
1 AAT AAT AAT A-AT AAT AAT AAT AAT AAT AAT A
65757485 TTAAAATTAA
Statistics
Matches: 56, Mismatches: 13, Indels: 8
0.73 0.17 0.10
Matches are distributed among these distances:
2 3 0.05
3 50 0.89
4 3 0.05
ACGTcount: A:0.61, C:0.00, G:0.09, T:0.30
Consensus pattern (3 bp):
AAT
Found at i:65757429 original size:12 final size:12
Alignment explanation
Indices: 65757414--65757484 Score: 63
Period size: 12 Copynumber: 5.7 Consensus size: 12
65757404 ACAAAAATAG
65757414 TAATAATAAGAA
1 TAATAATAAGAA
*
65757426 TAATAATATGTTAA
1 TAATAATAAG--AA
65757440 TAATAAT-AGAGA
1 TAATAATAAGA-A
*
65757452 TAATAATAAAAGA
1 TAATAATAAGA-A
* *
65757465 TAATAGTAATAA
1 TAATAATAAGAA
65757477 TAATAATA
1 TAATAATA
65757485 TTAAAATTAA
Statistics
Matches: 49, Mismatches: 6, Indels: 8
0.78 0.10 0.13
Matches are distributed among these distances:
11 1 0.02
12 25 0.51
13 14 0.29
14 9 0.18
ACGTcount: A:0.61, C:0.00, G:0.08, T:0.31
Consensus pattern (12 bp):
TAATAATAAGAA
Found at i:65757864 original size:21 final size:21
Alignment explanation
Indices: 65757838--65757896 Score: 100
Period size: 21 Copynumber: 2.8 Consensus size: 21
65757828 GGGTAAGGAT
* *
65757838 CAAAACGACGTCGTTTTGGCC
1 CAAAACGGCGTCGTTTCGGCC
65757859 CAAAACGGCGTCGTTTCGGCC
1 CAAAACGGCGTCGTTTCGGCC
65757880 CAAAACGGCGTCGTTTC
1 CAAAACGGCGTCGTTTC
65757897 AAGAGTCTAT
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 36 1.00
ACGTcount: A:0.22, C:0.31, G:0.25, T:0.22
Consensus pattern (21 bp):
CAAAACGGCGTCGTTTCGGCC
Found at i:65781594 original size:35 final size:35
Alignment explanation
Indices: 65781550--65781716 Score: 192
Period size: 35 Copynumber: 4.6 Consensus size: 35
65781540 TCCTCATTGA
** *
65781550 AATACCATACCTACATTTTTCAACTCGGTATGGGA-
1 AATACCATACCTACATTTCACAACTCAGTAT-GGAT
* ** *
65781585 AATGCCATACCTACATTTCTTAACTTAGTATGGATTTGAT
1 AATACCATACCTACATTTCACAACTCAGTAT-G----GAT
*
65781625 AATACCATACCTACATTTCACAGCTCAGTATGGAT
1 AATACCATACCTACATTTCACAACTCAGTATGGAT
65781660 AATACCATACCTACATTTCACAACTCAGTATGGAT
1 AATACCATACCTACATTTCACAACTCAGTATGGAT
*
65781695 GATACCATACCTACATTTCACA
1 AATACCATACCTACATTTCACA
65781717 CTTTGCCATG
Statistics
Matches: 115, Mismatches: 12, Indels: 10
0.84 0.09 0.07
Matches are distributed among these distances:
35 86 0.75
39 3 0.03
40 26 0.23
ACGTcount: A:0.34, C:0.24, G:0.11, T:0.32
Consensus pattern (35 bp):
AATACCATACCTACATTTCACAACTCAGTATGGAT
Found at i:65781635 original size:75 final size:73
Alignment explanation
Indices: 65781545--65781716 Score: 217
Period size: 75 Copynumber: 2.4 Consensus size: 73
65781535 GGTTTTCCTC
** * * **
65781545 ATTGAAATACCATACCTACATTTTTCAACTCGGTATGGGA-AATGCCATACCTACATTTCTTAAC
1 ATTGAAATACCATACCTACATTTCACAACTCAGTAT-GGATAATACCATACCTACATTTCACAAC
*
65781609 TTAGTATGG
65 TCAGTATGG
*
65781618 ATTTGATAATACCATACCTACATTTCACAGCTCAGTATGGATAATACCATACCTACATTTCACAA
1 A-TTGA-AATACCATACCTACATTTCACAACTCAGTATGGATAATACCATACCTACATTTCACAA
65781683 CTCAGTATGG
64 CTCAGTATGG
65781693 A-TG--ATACCATACCTACATTTCACA
1 ATTGAAATACCATACCTACATTTCACA
65781717 CTTTGCCATG
Statistics
Matches: 88, Mismatches: 8, Indels: 9
0.84 0.08 0.09
Matches are distributed among these distances:
70 21 0.24
73 3 0.03
74 7 0.08
75 57 0.65
ACGTcount: A:0.34, C:0.23, G:0.11, T:0.32
Consensus pattern (73 bp):
ATTGAAATACCATACCTACATTTCACAACTCAGTATGGATAATACCATACCTACATTTCACAACT
CAGTATGG
Found at i:65787947 original size:12 final size:12
Alignment explanation
Indices: 65787930--65787954 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
65787920 TACATCATGC
65787930 TTATGAACAAGT
1 TTATGAACAAGT
65787942 TTATGAACAAGT
1 TTATGAACAAGT
65787954 T
1 T
65787955 CATAACTTCT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.40, C:0.08, G:0.16, T:0.36
Consensus pattern (12 bp):
TTATGAACAAGT
Found at i:65788194 original size:81 final size:82
Alignment explanation
Indices: 65788056--65788241 Score: 222
Period size: 81 Copynumber: 2.3 Consensus size: 82
65788046 ACTCGATATC
* * *
65788056 TCGCACACTAAGTGCCAAAGCATAGCTAAAGCTATTATAATCTCGCATACTAAGTGCC-TTTCAT
1 TCGCACACTAAGTGCCAAAGCATAGCTAAAGCTATTACAATCTCGCACACTAAGTGCCATAT-AT
65788120 AGCCGAAGCTA-TCTC-AT
65 AGCCGAAGCTATTC-CAAT
* * * * *
65788137 TCTTGCACACTAAGTGCCATA-TATAGCTGAAGCTATTCCGAT-TCGCACACTAAGTGCCATATA
1 TC--GCACACTAAGTGCCAAAGCATAGCTAAAGCTATTACAATCTCGCACACTAAGTGCCATATA
65788200 TAGCCGAAGCTATTCCAAT
64 TAGCCGAAGCTATTCCAAT
65788219 TCGCACACTAAGTGCCAAA-CATA
1 TCGCACACTAAGTGCCAAAGCATA
65788242 ATTGATTCAT
Statistics
Matches: 90, Mismatches: 10, Indels: 11
0.81 0.09 0.10
Matches are distributed among these distances:
80 19 0.21
81 31 0.34
82 24 0.27
83 16 0.18
ACGTcount: A:0.32, C:0.26, G:0.15, T:0.26
Consensus pattern (82 bp):
TCGCACACTAAGTGCCAAAGCATAGCTAAAGCTATTACAATCTCGCACACTAAGTGCCATATATA
GCCGAAGCTATTCCAAT
Found at i:65788195 original size:40 final size:40
Alignment explanation
Indices: 65788056--65788235 Score: 195
Period size: 40 Copynumber: 4.4 Consensus size: 40
65788046 ACTCGATATC
* * ** **
65788056 TCGCACACTAAGTGCCAAAGCATAGCTAAAGCTATTATAAT
1 TCGCACACTAAGTGCCATA-TATAGCCGAAGCTATTCCAAT
* *
65788097 CTCGCATACTAAGTGCC-TTTCATAGCCGAAGCTA-TCTC-AT
1 -TCGCACACTAAGTGCCATAT-ATAGCCGAAGCTATTC-CAAT
* *
65788137 TCTTGCACACTAAGTGCCATATATAGCTGAAGCTATTCCGAT
1 TC--GCACACTAAGTGCCATATATAGCCGAAGCTATTCCAAT
65788179 TCGCACACTAAGTGCCATATATAGCCGAAGCTATTCCAAT
1 TCGCACACTAAGTGCCATATATAGCCGAAGCTATTCCAAT
65788219 TCGCACACTAAGTGCCA
1 TCGCACACTAAGTGCCA
65788236 AACATAATTG
Statistics
Matches: 118, Mismatches: 13, Indels: 16
0.80 0.09 0.11
Matches are distributed among these distances:
39 2 0.02
40 56 0.47
41 37 0.31
42 23 0.19
ACGTcount: A:0.31, C:0.27, G:0.16, T:0.27
Consensus pattern (40 bp):
TCGCACACTAAGTGCCATATATAGCCGAAGCTATTCCAAT
Found at i:65791589 original size:29 final size:29
Alignment explanation
Indices: 65791547--65791620 Score: 96
Period size: 29 Copynumber: 2.6 Consensus size: 29
65791537 TGCACTCTAT
*
65791547 TTCGATGCTACTTTGTTTTGGTATTGCAC
1 TTCGGTGCTACTTTGTTTTGGTATTGCAC
* *
65791576 TTCGGTGCTACTTTGCTTTGTTATTGCAC
1 TTCGGTGCTACTTTGTTTTGGTATTGCAC
*
65791605 TTCAGTGC-ATCTTTGT
1 TTCGGTGCTA-CTTTGT
65791621 ATTATTTTTG
Statistics
Matches: 39, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
28 1 0.03
29 38 0.97
ACGTcount: A:0.12, C:0.19, G:0.20, T:0.49
Consensus pattern (29 bp):
TTCGGTGCTACTTTGTTTTGGTATTGCAC
Found at i:65794058 original size:50 final size:49
Alignment explanation
Indices: 65793948--65794123 Score: 208
Period size: 50 Copynumber: 3.5 Consensus size: 49
65793938 CTGGTGCGCA
* * * *
65793948 TAGTAGCCTGCACATAGTACTACACATGCGACCAGTTATCCGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCCGGTACACG
** * * *
65793997 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATCTGATACATG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACC-AATTATCCGGTACACG
* * * *
65794047 TAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGTTATCGGGTACGCA
1 TAGTAGCCTGCACTTAGTACTACACACGTGA-CCAA-TTATCCGGTACACG
65794098 TAGTAGCCTGCACTTAGTACTACACA
1 TAGTAGCCTGCACTTAGTACTACACA
65794124 TGCGACCTCA
Statistics
Matches: 107, Mismatches: 17, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
49 30 0.28
50 43 0.40
51 34 0.32
ACGTcount: A:0.29, C:0.27, G:0.19, T:0.25
Consensus pattern (49 bp):
TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCCGGTACACG
Found at i:65794131 original size:101 final size:99
Alignment explanation
Indices: 65793948--65794131 Score: 269
Period size: 101 Copynumber: 1.8 Consensus size: 99
65793938 CTGGTGCGCA
* * *
65793948 TAGTAGCCTGCACATAGTACTACACATGCGACCAGTTATCCGGTACACGTAGTAGCCTGCACTTA
1 TAGTAGCCTGCACATAGTACTACACACGCGACAAGTTATCCGGTACACATAGTAGCCTGCACTTA
*
65794013 GTACTACACACGTGACCTAACCATCTGATACATG
66 GTACTACACACGCGACCTAACCATCTGATACATG
* * * *
65794047 TAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGTTATCGGGTACGCATAGTAGCCTGCACT
1 TAGTAGCCTGCACATAGTACTACACACGCGA-C-AAGTTATCCGGTACACATAGTAGCCTGCACT
*
65794112 TAGTACTACACATGCGACCT
64 TAGTACTACACACGCGACCT
65794132 CACAATGGAT
Statistics
Matches: 74, Mismatches: 9, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
99 28 0.38
100 1 0.01
101 45 0.61
ACGTcount: A:0.28, C:0.27, G:0.20, T:0.25
Consensus pattern (99 bp):
TAGTAGCCTGCACATAGTACTACACACGCGACAAGTTATCCGGTACACATAGTAGCCTGCACTTA
GTACTACACACGCGACCTAACCATCTGATACATG
Found at i:65796501 original size:14 final size:15
Alignment explanation
Indices: 65796482--65796545 Score: 55
Period size: 14 Copynumber: 4.4 Consensus size: 15
65796472 TAAAGATAAT
65796482 AAGAAAACC-GAATA
1 AAGAAAACCAGAATA
*
65796496 AAGAAATCCA-AGATA
1 AAGAAAACCAGA-ATA
*
65796511 GA-AAAACCTAGAATA
1 AAGAAAACC-AGAATA
*
65796526 AA-AAATCCAGAATA
1 AAGAAAACCAGAATA
65796540 AAGAAA
1 AAGAAA
65796546 CCCAAGATAC
Statistics
Matches: 40, Mismatches: 5, Indels: 9
0.74 0.09 0.17
Matches are distributed among these distances:
14 22 0.55
15 17 0.43
16 1 0.03
ACGTcount: A:0.64, C:0.12, G:0.12, T:0.11
Consensus pattern (15 bp):
AAGAAAACCAGAATA
Found at i:65799574 original size:49 final size:49
Alignment explanation
Indices: 65799507--65799602 Score: 156
Period size: 49 Copynumber: 2.0 Consensus size: 49
65799497 GTAGACAAGG
* *
65799507 TTATCTGGTACGCATAGTAGCCTGCACATAGTACTACACATGCGACCAA
1 TTATCCGGTACACATAGTAGCCTGCACATAGTACTACACATGCGACCAA
* *
65799556 TTATCCGGTACACGTAGTAGCCTGCACTTAGTACTACACATGCGACC
1 TTATCCGGTACACATAGTAGCCTGCACATAGTACTACACATGCGACC
65799603 TCACAATGGA
Statistics
Matches: 43, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
49 43 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (49 bp):
TTATCCGGTACACATAGTAGCCTGCACATAGTACTACACATGCGACCAA
Found at i:65799802 original size:134 final size:134
Alignment explanation
Indices: 65799570--65799828 Score: 509
Period size: 134 Copynumber: 1.9 Consensus size: 134
65799560 CCGGTACACG
65799570 TAGTAGCCTGCACTTAGTACTACACATGCGACCTCACAATGGATCATTCGTATCGTTTTTATTCC
1 TAGTAGCCTGCACTTAGTACTACACATGCGACCTCACAATGGATCATTCGTATCGTTTTTATTCC
65799635 GAAGGCTCAACCGGGAAATTCCTCACTTTCCAACATGTTACAAATTTATTCATAGTCTTTGGGTA
66 GAAGGCTCAACCGGGAAATTCCTCACTTTCCAACATGTTACAAATTTATTCATAGTCTTTGGGTA
65799700 CGCA
131 CGCA
65799704 TAGTAGCCTGCACTTAGTACTACACATGCGACCTCACAATGGATCATTCGTATCGTTTTTATTCC
1 TAGTAGCCTGCACTTAGTACTACACATGCGACCTCACAATGGATCATTCGTATCGTTTTTATTCC
*
65799769 GAAGGCTCAACCGGGAAATTCCTCACTTTCCAACATGTTACAAATTTATTTATAGTCTTT
66 GAAGGCTCAACCGGGAAATTCCTCACTTTCCAACATGTTACAAATTTATTCATAGTCTTT
65799829 TTTTTCAGTT
Statistics
Matches: 124, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
134 124 1.00
ACGTcount: A:0.27, C:0.24, G:0.15, T:0.33
Consensus pattern (134 bp):
TAGTAGCCTGCACTTAGTACTACACATGCGACCTCACAATGGATCATTCGTATCGTTTTTATTCC
GAAGGCTCAACCGGGAAATTCCTCACTTTCCAACATGTTACAAATTTATTCATAGTCTTTGGGTA
CGCA
Found at i:65807045 original size:42 final size:44
Alignment explanation
Indices: 65806978--65807068 Score: 132
Period size: 42 Copynumber: 2.1 Consensus size: 44
65806968 CATTGACTTA
* * *
65806978 TGATTTACGTGTAAGACCATGTCTGGGACATTGGCATC-ATATT
1 TGATTTACGTGTAAAACCATATCTGGGACAGTGGCATCGATATT
*
65807021 TGATTT-CGTGTAAAACCCTATCTGGGACAGTGGCATCGATATT
1 TGATTTACGTGTAAAACCATATCTGGGACAGTGGCATCGATATT
65807064 TGATT
1 TGATT
65807069 ACATATAAGA
Statistics
Matches: 43, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
42 27 0.63
43 16 0.37
ACGTcount: A:0.25, C:0.16, G:0.23, T:0.35
Consensus pattern (44 bp):
TGATTTACGTGTAAAACCATATCTGGGACAGTGGCATCGATATT
Found at i:65807088 original size:43 final size:42
Alignment explanation
Indices: 65806989--65807099 Score: 118
Period size: 43 Copynumber: 2.6 Consensus size: 42
65806979 GATTTACGTG
* * * * *
65806989 TAAGACCATGTCTGGGACATTGGCATCATATTTGATTTCGTG
1 TAAGACCACGTCTGGGACAGTGGCATCATATTTGATTACATA
* *
65807031 TAAAACC-CTATCTGGGACAGTGGCATCGATATTTGATTACATA
1 TAAGACCAC-GTCTGGGACAGTGGCATC-ATATTTGATTACATA
65807074 TAAGACCACGTCTGGGAC-GTTGGCAT
1 TAAGACCACGTCTGGGACAG-TGGCAT
65807100 TGTACGAGCT
Statistics
Matches: 56, Mismatches: 9, Indels: 7
0.78 0.12 0.10
Matches are distributed among these distances:
42 23 0.41
43 32 0.57
44 1 0.02
ACGTcount: A:0.27, C:0.19, G:0.23, T:0.31
Consensus pattern (42 bp):
TAAGACCACGTCTGGGACAGTGGCATCATATTTGATTACATA
Found at i:65810560 original size:76 final size:75
Alignment explanation
Indices: 65810428--65810600 Score: 223
Period size: 76 Copynumber: 2.3 Consensus size: 75
65810418 AGCTCAAGTG
65810428 AGCCATGTAA-CAGGAAGCTCAT--AAAAGCCGTAAATGGGAAGTTCATACGAGCCAATATCAGG
1 AGCCAT-TAATCAGGAAGCTCATGAAAAAGCCGTAAATGGGAAGTTCATACGAGCCAATATCAGG
*
65810490 AAGCTTCGGAGA
65 AAGCTCCGGA-A
* * *
65810502 A-CCATTAATCAGGAAGCTCATGAAAAAGCCTTTAATCGGGAAGTTCA-AGGGAGCCAATATCAG
1 AGCCATTAATCAGGAAGCTCATGAAAAAGCCGTAAAT-GGGAAGTTCATA-CGAGCCAATATCAG
65810565 GAAGCTCCGGAA
64 GAAGCTCCGGAA
65810577 AGCCATTAATC-GAGAAGCTCATGA
1 AGCCATTAATCAG-GAAGCTCATGA
65810601 GAGTTGCGGT
Statistics
Matches: 88, Mismatches: 4, Indels: 12
0.85 0.04 0.12
Matches are distributed among these distances:
72 3 0.03
73 16 0.18
74 1 0.01
75 15 0.17
76 53 0.60
ACGTcount: A:0.38, C:0.20, G:0.24, T:0.18
Consensus pattern (75 bp):
AGCCATTAATCAGGAAGCTCATGAAAAAGCCGTAAATGGGAAGTTCATACGAGCCAATATCAGGA
AGCTCCGGAA
Found at i:65811511 original size:39 final size:39
Alignment explanation
Indices: 65811466--65811616 Score: 203
Period size: 39 Copynumber: 3.9 Consensus size: 39
65811456 TCATATTTAA
* * * *
65811466 TCAGTAACAATCAGTTATTCAGTATAGTAATTTAGTCAT
1 TCAGTAACTATCAATTATTCAGTACAGTAATTTAGTTAT
* * *
65811505 TCAGTAACTATCAAATATTCAGTGCAGTAGTTTAGTTAT
1 TCAGTAACTATCAATTATTCAGTACAGTAATTTAGTTAT
* *
65811544 TCAATAACTATCAATTATTCAATACAGTAATTTAGTTAT
1 TCAGTAACTATCAATTATTCAGTACAGTAATTTAGTTAT
* *
65811583 TCAGAAACTATCAATTATTCAGTACAGTAGTTTA
1 TCAGTAACTATCAATTATTCAGTACAGTAATTTA
65811617 CCCCTATTAA
Statistics
Matches: 96, Mismatches: 16, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
39 96 1.00
ACGTcount: A:0.37, C:0.13, G:0.11, T:0.38
Consensus pattern (39 bp):
TCAGTAACTATCAATTATTCAGTACAGTAATTTAGTTAT
Found at i:65811563 original size:18 final size:18
Alignment explanation
Indices: 65811540--65811603 Score: 58
Period size: 18 Copynumber: 3.4 Consensus size: 18
65811530 AGTAGTTTAG
65811540 TTATTCAATAACTATCAA
1 TTATTCAATAACTATCAA
* * *
65811558 TTATTCAATACAGTAATTTAG
1 TTATTCAATA-ACT-A-TCAA
65811579 TTATTCAGA-AACTATCAA
1 TTATTCA-ATAACTATCAA
65811597 TTATTCA
1 TTATTCA
65811604 GTACAGTAGT
Statistics
Matches: 36, Mismatches: 6, Indels: 8
0.72 0.12 0.16
Matches are distributed among these distances:
18 19 0.53
19 3 0.08
20 3 0.08
21 10 0.28
22 1 0.03
ACGTcount: A:0.41, C:0.14, G:0.05, T:0.41
Consensus pattern (18 bp):
TTATTCAATAACTATCAA
Found at i:65811584 original size:21 final size:21
Alignment explanation
Indices: 65811520--65811585 Score: 57
Period size: 21 Copynumber: 3.3 Consensus size: 21
65811510 AACTATCAAA
* * *
65811520 TATTCAGTGCAGTAGTTTAGT
1 TATTCAATACAGTAATTTAGT
* * *
65811541 TATTCAATA-ACT-A-TCAAT
1 TATTCAATACAGTAATTTAGT
65811559 TATTCAATACAGTAATTTAGT
1 TATTCAATACAGTAATTTAGT
65811580 TATTCA
1 TATTCA
65811586 GAAACTATCA
Statistics
Matches: 33, Mismatches: 9, Indels: 6
0.69 0.19 0.12
Matches are distributed among these distances:
18 12 0.36
19 2 0.06
20 3 0.09
21 16 0.48
ACGTcount: A:0.35, C:0.12, G:0.11, T:0.42
Consensus pattern (21 bp):
TATTCAATACAGTAATTTAGT
Found at i:65812627 original size:21 final size:20
Alignment explanation
Indices: 65812603--65812647 Score: 63
Period size: 21 Copynumber: 2.2 Consensus size: 20
65812593 AAAATATTAT
65812603 AATATAATTATTTAATTAATA
1 AATATAATTATTTAA-TAATA
**
65812624 AATATCTTTATTTAATAATA
1 AATATAATTATTTAATAATA
65812644 AATA
1 AATA
65812648 ATAAATAATA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
20 9 0.41
21 13 0.59
ACGTcount: A:0.51, C:0.02, G:0.00, T:0.47
Consensus pattern (20 bp):
AATATAATTATTTAATAATA
Found at i:65812649 original size:7 final size:7
Alignment explanation
Indices: 65812637--65812661 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
65812627 ATCTTTATTT
65812637 AATAATA
1 AATAATA
65812644 AATAATA
1 AATAATA
65812651 AATAATA
1 AATAATA
65812658 AATA
1 AATA
65812662 TCTATTTACT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (7 bp):
AATAATA
Found at i:65812657 original size:34 final size:36
Alignment explanation
Indices: 65812619--65812686 Score: 104
Period size: 37 Copynumber: 1.9 Consensus size: 36
65812609 ATTATTTAAT
*
65812619 TAATAAATATC-TTTA-TTTAATAATAAATAATAAA
1 TAATAAATATCATTTACTTAAATAATAAATAATAAA
65812653 TAATAAATATCTATTTACTTAAATAATAAATAAT
1 TAATAAATATC-ATTTACTTAAATAATAAATAAT
65812687 TTAAATCCAT
Statistics
Matches: 30, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
34 11 0.37
36 4 0.13
37 15 0.50
ACGTcount: A:0.54, C:0.04, G:0.00, T:0.41
Consensus pattern (36 bp):
TAATAAATATCATTTACTTAAATAATAAATAATAAA
Found at i:65813485 original size:5 final size:5
Alignment explanation
Indices: 65813475--65813503 Score: 58
Period size: 5 Copynumber: 5.8 Consensus size: 5
65813465 AATTCATATT
65813475 CAATC CAATC CAATC CAATC CAATC CAAT
1 CAATC CAATC CAATC CAATC CAATC CAAT
65813504 TAACATCTTT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 24 1.00
ACGTcount: A:0.41, C:0.38, G:0.00, T:0.21
Consensus pattern (5 bp):
CAATC
Found at i:65815150 original size:13 final size:13
Alignment explanation
Indices: 65815134--65815166 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
65815124 TTTGATTAAA
*
65815134 TTAGTTAATTAGT
1 TTAGATAATTAGT
65815147 TTAGATAATTAGT
1 TTAGATAATTAGT
65815160 TTA-ATAA
1 TTAGATAA
65815167 ACAAACCCTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 4 0.21
13 15 0.79
ACGTcount: A:0.39, C:0.00, G:0.12, T:0.48
Consensus pattern (13 bp):
TTAGATAATTAGT
Found at i:65823051 original size:13 final size:13
Alignment explanation
Indices: 65823035--65823067 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
65823025 TTTGATTAAA
*
65823035 TTAGTTAATTAGT
1 TTAGATAATTAGT
65823048 TTAGATAATTAGT
1 TTAGATAATTAGT
65823061 TTA-ATAA
1 TTAGATAA
65823068 ACAAACCCTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 4 0.21
13 15 0.79
ACGTcount: A:0.39, C:0.00, G:0.12, T:0.48
Consensus pattern (13 bp):
TTAGATAATTAGT
Found at i:65830645 original size:15 final size:15
Alignment explanation
Indices: 65830625--65830676 Score: 50
Period size: 15 Copynumber: 3.2 Consensus size: 15
65830615 ACTACAAAAC
65830625 ATTTATTATTAATAT
1 ATTTATTATTAATAT
*
65830640 ATTTATAATTGTAATAAAT
1 ATTTATTA-T-TAAT--AT
*
65830659 ATTTATTATTAAAAT
1 ATTTATTATTAATAT
65830674 ATT
1 ATT
65830677 AATATTGAAT
Statistics
Matches: 30, Mismatches: 3, Indels: 8
0.73 0.07 0.20
Matches are distributed among these distances:
15 12 0.40
16 1 0.03
17 7 0.23
18 1 0.03
19 9 0.30
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (15 bp):
ATTTATTATTAATAT
Found at i:65830722 original size:13 final size:13
Alignment explanation
Indices: 65830704--65830743 Score: 62
Period size: 13 Copynumber: 3.0 Consensus size: 13
65830694 ATAATATGTG
65830704 AAAAATATTATTT
1 AAAAATATTATTT
65830717 AAAAATATTATTTT
1 AAAAATATTA-TTT
*
65830731 TAAAATATTATTT
1 AAAAATATTATTT
65830744 TTAAAATTTA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
13 13 0.52
14 12 0.48
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (13 bp):
AAAAATATTATTT
Found at i:65830725 original size:49 final size:48
Alignment explanation
Indices: 65830631--65830726 Score: 117
Period size: 49 Copynumber: 2.0 Consensus size: 48
65830621 AAACATTTAT
*
65830631 TATTAATATATTTATAATTGTAATAAATATTTATTATTAAAATATTAA
1 TATTAATATATTTATAATTGTAATAAATATTTATTATAAAAATATTAA
*
65830679 TATTGAATATTTTTAATAATATGTGAA-AAATA-TTATT-TAAAAATATTA
1 TATT-AATATATTT-ATAAT-TGT-AATAAATATTTATTATAAAAATATTA
65830727 TTTTTAAAAT
Statistics
Matches: 42, Mismatches: 2, Indels: 7
0.82 0.04 0.14
Matches are distributed among these distances:
48 4 0.10
49 18 0.43
50 10 0.24
51 8 0.19
52 2 0.05
ACGTcount: A:0.48, C:0.00, G:0.04, T:0.48
Consensus pattern (48 bp):
TATTAATATATTTATAATTGTAATAAATATTTATTATAAAAATATTAA
Found at i:65830735 original size:27 final size:27
Alignment explanation
Indices: 65830705--65830764 Score: 86
Period size: 27 Copynumber: 2.2 Consensus size: 27
65830695 TAATATGTGA
*
65830705 AAAATATTA-TTTAAAAATATTATTTTT
1 AAAATATTATTTTAAAAAT-TTATTATT
*
65830732 AAAATATTATTTTTAAAATTTATTATT
1 AAAATATTATTTTAAAAATTTATTATT
65830759 AAAATA
1 AAAATA
65830765 AAATTGAAAT
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
27 22 0.73
28 8 0.27
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (27 bp):
AAAATATTATTTTAAAAATTTATTATT
Found at i:65830744 original size:14 final size:14
Alignment explanation
Indices: 65830705--65830764 Score: 88
Period size: 14 Copynumber: 4.4 Consensus size: 14
65830695 TAATATGTGA
*
65830705 AAAATATTA-TTTA
1 AAAATATTATTTTT
65830718 AAAATATTATTTTT
1 AAAATATTATTTTT
65830732 AAAATATTATTTTT
1 AAAATATTATTTTT
*
65830746 AAAAT-TTATTATT
1 AAAATATTATTTTT
65830759 AAAATA
1 AAAATA
65830765 AAATTGAAAT
Statistics
Matches: 43, Mismatches: 2, Indels: 3
0.90 0.04 0.06
Matches are distributed among these distances:
13 21 0.49
14 22 0.51
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (14 bp):
AAAATATTATTTTT
Found at i:65840997 original size:12 final size:12
Alignment explanation
Indices: 65840980--65841015 Score: 54
Period size: 12 Copynumber: 3.0 Consensus size: 12
65840970 ATTCATTTGA
65840980 CATTCATGCATT
1 CATTCATGCATT
*
65840992 CATTCATGCATC
1 CATTCATGCATT
*
65841004 CATTCATTCATT
1 CATTCATGCATT
65841016 GCATATCCCA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.25, C:0.28, G:0.06, T:0.42
Consensus pattern (12 bp):
CATTCATGCATT
Found at i:65841009 original size:16 final size:17
Alignment explanation
Indices: 65840988--65841019 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
65840978 GACATTCATG
65840988 CATTCATTCA-TGCATC
1 CATTCATTCATTGCATC
65841004 CATTCATTCATTGCAT
1 CATTCATTCATTGCAT
65841020 ATCCCATACT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 10 0.67
17 5 0.33
ACGTcount: A:0.25, C:0.28, G:0.06, T:0.41
Consensus pattern (17 bp):
CATTCATTCATTGCATC
Found at i:65849062 original size:76 final size:76
Alignment explanation
Indices: 65848964--65849177 Score: 374
Period size: 76 Copynumber: 2.8 Consensus size: 76
65848954 TCTGATGTTT
65848964 TATTTCAAAATTCAATTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTATTGTC
1 TATTTCAAAATTCAATTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTATTGTC
65849029 AATTTTTCGTA
66 AATTTTTCGTA
*
65849040 TATTTCAAAATTCAATTTATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTATTGTC
1 TATTTCAAAATTCAATTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTATTGTC
65849105 AATTTTTCGTA
66 AATTTTTCGTA
* * * * *
65849116 TGTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACGCGCTGAGGTATT
1 TATTTCAAAATTCAATTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTATT
65849178 TTTAAAAAAA
Statistics
Matches: 131, Mismatches: 7, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
76 131 1.00
ACGTcount: A:0.27, C:0.16, G:0.25, T:0.33
Consensus pattern (76 bp):
TATTTCAAAATTCAATTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTATTGTC
AATTTTTCGTA
Found at i:65849219 original size:62 final size:62
Alignment explanation
Indices: 65849122--65849733 Score: 1215
Period size: 62 Copynumber: 9.9 Consensus size: 62
65849112 CGTATGTTTC
65849122 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACGCGCTGAGGTATTTTTAAA
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACGCGCTGAGGTATTTTTAAA
65849184 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACGCGCTGAGGTATTTTTAAA
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACGCGCTGAGGTATTTTTAAA
65849246 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACGCGCTGAGGTATTTTTAAA
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACGCGCTGAGGTATTTTTAAA
65849308 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACGCGCTGAGGTATTTTTAAA
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACGCGCTGAGGTATTTTTAAA
65849370 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACGCGCTGAGGTATTTTTAAA
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACGCGCTGAGGTATTTTTAAA
65849432 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACGCGCTGAGGTATTTTTAAA
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACGCGCTGAGGTATTTTTAAA
65849494 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACGCGCTGAGGTATTTTTAAA
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACGCGCTGAGGTATTTTTAAA
65849556 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACGCGCTGAGGTATTTTTAAA
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACGCGCTGAGGTATTTTTAAA
65849618 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACGCGCTGAGGTATTTTTAAA
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACGCGCTGAGGTATTTTTAAA
*
65849680 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTA
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACGCGCTGAGGTA
65849734 ATTTCAATTT
Statistics
Matches: 549, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
62 549 1.00
ACGTcount: A:0.32, C:0.16, G:0.26, T:0.25
Consensus pattern (62 bp):
AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACGCGCTGAGGTATTTTTAAA
Found at i:65849954 original size:76 final size:76
Alignment explanation
Indices: 65849842--65850036 Score: 381
Period size: 76 Copynumber: 2.6 Consensus size: 76
65849832 TTTCTGCCTT
65849842 TCAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACGCGCTGAGGTAAGTTC
1 TCAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACGCGCTGAGGTAAGTTC
65849907 AATTTCTGTTG
66 AATTTCTGTTG
65849918 TCAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACGCGCTGAGGTAAGTTC
1 TCAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACGCGCTGAGGTAAGTTC
65849983 AATTTCTGTTG
66 AATTTCTGTTG
*
65849994 TCAAAAAAAAATCAACTCATATTGCGAGAGGTGATTTGAGCCT
1 TCAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT
65850037 TAGATCACAC
Statistics
Matches: 118, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
76 118 1.00
ACGTcount: A:0.33, C:0.17, G:0.24, T:0.26
Consensus pattern (76 bp):
TCAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACGCGCTGAGGTAAGTTC
AATTTCTGTTG
Found at i:65849986 original size:168 final size:167
Alignment explanation
Indices: 65849677--65849987 Score: 500
Period size: 168 Copynumber: 1.9 Consensus size: 167
65849667 AGGTATTTTT
*
65849677 AAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAAT
1 AAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAAGTTCAAT
**
65849742 TTCTGTTGTCAAAAAAATCAACTTGTATTGCGAGAGGCGAGTTGAGCCTCAGGTCACACGTCGAG
66 TTCTGTTGTCAAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGG-CACACGTCGAG
**
65849807 GTATTTTCAATTTTCATTTTTCAAATTTCTGCCTTTCA
130 GTAAGTTCAATTTTCATTTTTCAAATTTCTGCCTTTCA
*
65849845 AAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACGCGCTGAGGTAAGTTCAAT
1 AAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAAGTTCAAT
* *
65849910 TTCTGTTGTCAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG-ACGCG-CTG
66 TTCTGTTGTC--AAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGGCACACGTC-G
65849973 AGGTAAGTTCAATTT
128 AGGTAAGTTCAATTT
65849988 CTGTTGTCAA
Statistics
Matches: 132, Mismatches: 8, Indels: 6
0.90 0.05 0.04
Matches are distributed among these distances:
167 1 0.01
168 91 0.69
170 40 0.30
ACGTcount: A:0.31, C:0.18, G:0.23, T:0.29
Consensus pattern (167 bp):
AAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAAGTTCAAT
TTCTGTTGTCAAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGGCACACGTCGAGG
TAAGTTCAATTTTCATTTTTCAAATTTCTGCCTTTCA
Found at i:65850096 original size:170 final size:166
Alignment explanation
Indices: 65849904--65850229 Score: 444
Period size: 170 Copynumber: 1.9 Consensus size: 166
65849894 CTGAGGTAAG
*
65849904 TTCAATTTCTGTTGTCAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG-ACG
1 TTCAATTTCTGTTGTCAAAAAAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCT-AGGCACG
* *
65849968 CGCTGAGGTAAGTTCAATTTCTGT-TGTCAAAAAAAAATCAACTCATATTGCGAGAGGTGATTTG
65 CGCTGAGCTAAGTTCAATTTCTGTCTGTC---AAAAAATCAACTCATATTGCGAGAGGTGAGTTG
*
65850032 AGCCTT-AGATCACACGCCGAGGTATTTTCAATTTTCGTTT
127 AG-CTTCAGATCACACACCGAGGTATTTTCAATTTTCGTTT
* *
65850072 TTCAATTTCTGCCTT-TCAAAAAAAAAATCGACTCATATTACGAGAGGTGAGTTGAGCCTTGGCT
1 TTCAATTTCTG--TTGTC-AAAAAAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTAGG--
** *
65850136 CACGCGCTGAGCTATTTTCAATTTCTGTCTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTT
61 CACGCGCTGAGCTAAGTTCAATTTCTGTCTGTCAAAAAATCAACTCATATTGCGAGAGGTGAGTT
*
65850201 GAGCTTCAGATCACACACTGAGGTATTTT
126 GAGCTTCAGATCACACACCGAGGTATTTT
65850230 TTTTTCAATT
Statistics
Matches: 140, Mismatches: 10, Indels: 14
0.85 0.06 0.09
Matches are distributed among these distances:
168 11 0.08
169 7 0.05
170 95 0.68
172 24 0.17
173 3 0.02
ACGTcount: A:0.30, C:0.18, G:0.20, T:0.32
Consensus pattern (166 bp):
TTCAATTTCTGTTGTCAAAAAAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTAGGCACGC
GCTGAGCTAAGTTCAATTTCTGTCTGTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCT
TCAGATCACACACCGAGGTATTTTCAATTTTCGTTT
Found at i:65850118 original size:246 final size:244
Alignment explanation
Indices: 65849677--65850893 Score: 826
Period size: 246 Copynumber: 4.8 Consensus size: 244
65849667 AGGTATTTTT
*
65849677 AAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAAT
1 AAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAAGTTCAAT
** * *
65849742 TTCTGTTGTCAAAAAAATCAACTTGTATTGCGAGAGGCGAGTTGAGCCTCAGGTCACACGTCGAG
66 TTCTGTTGTCAAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGATCACACGCCGAG
*
65849807 GTATTTTCAATTTTCATTTTTCAAATTTCTGCCTTTCAAAAAAAAATCAACTCATATTGCGAGAG
131 GTATTTTCAATTTTCATTTTTCAAATTTCTGCCTTTCAAAAAAAAATCAACTCATATTACGAGAG
*
65849872 GTGAGTTGAGCCTCAGG-ACGCGCTGAGGTAAGTTCAATTTCTGT-TGTC
196 GTGAGTTGAGCCT-AGGCACGCGCTGAGCTAAGTTCAATTTCTGTCTGTC
*
65849920 AAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACGCGCTGAGGTAAGTTCAA
1 -AAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAAGTTCAA
* * *
65849985 TTTCTGTTGTCAAAAAAAAATCAACTCATATTGCGAGAGGTGATTTGAGCCTTAGATCACACGCC
65 TTTCTGTTGTC--AAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGATCACACGCC
* *
65850050 GAGGTATTTTCAATTTTCGTTTTTC-AATTTCTGCCTTTCAAAAAAAAAATCGACTCATATTACG
128 GAGGTATTTTCAATTTTCATTTTTCAAATTTCTGCCTTTC-AAAAAAAAATCAACTCATATTACG
* ** *
65850114 AGAGGTGAGTTGAGCCTTGGCTCACGCGCTGAGCTATTTTCAATTTCTGTCTTTC
192 AGAGGTGAGTTGAGCCTAGG--CACGCGCTGAGCTAAGTTCAATTTCTGTCTGTC
* * * *
65850169 --AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAGATCACACACTGAGGTATTTTTT
1 AAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAG--GACACGCTGAGGTA-----A
* * * * * *
65850232 TTTCAATTTATATTTTTC--AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT-TGAGTCA
59 GTTCAATTTCT-GTTGTCAAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGA-TCA
*** * ** * * **
65850294 CATATCGAGGCATTTTCAA-AATCTACTTTTC-AAGTTAAG--TTTC----AAAAATCAACTCAT
122 CACGCCGAGGTATTTTCAATTTTC-ATTTTTCAAATTTCTGCCTTTCAAAAAAAAATCAACTCAT
* * *** ** * * *
65850351 ATTGCGAGAGGTGAGTTGAGCCTTGAGTCAC-ATATCGAGGC-ATTTTCAAAATCTACTTTTCAA
186 ATTACGAGAGGTGAGTTGAGCC-T-AGGCACGCGCT-GA-GCTAAGTTC--AAT-TTC-TGTC-T
*
65850414 GTT
242 GTC
* * * **
65850417 AAGTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTT
1 AA----AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAAGTT
* * * * *
65850482 CAATTTCTGTCTTTCAAAAAAATCAGCTCATATTGCGAGAGGTGAGTTGAACCTC--A--AGACG
62 CAATTTCTGT-TGTCAAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGATCACACG
* * * ** *
65850543 CTGAGGTGTTTTCCA-TTTC-TGTTCTTC-AATTTCTGTGTTTC--AAAAAAATC-GCTCATATT
126 CCGAGGTATTTTCAATTTTCAT-TT-TTCAAATTTCTGCCTTTCAAAAAAAAATCAACTCATATT
* * ** * * ** *
65850602 GCGAGTGGTGAGTTGAGCCTTGACTCACACGCTGAGGTATTTTCAAATTCTGTTTTTCAAATTTT
189 ACGAGAGGTGAGTTGAGCC-T-AGGCACGCGCTGAGCTAAGTTCAATTTCTG----TC------T
65850667 GTTTTTCC
242 G----T-C
* *
65850675 AAAAAAAATCAACTCATATTGCGAGAGGTGAGTTCAGCCTCAAGACACGCTGAGGTATTTTCATT
1 AAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTA-----A--
* * *
65850740 TTTTTTTTCAATTTATGTTTGTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAG
59 -----GTTCAATTTCTG-TTGTCAAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAG
** ** ** *
65850805 GCCACACGCCGAGGTATTTTCAATTGATGTTTTTTTTTTTAATTTATG-CTTTGC----AAAAAT
118 ATCACACGCCGAGGTATTTTCAA-T--T-TTCATTTTTCAAATTTCTGCCTTT-CAAAAAAAAAT
65850865 CAACTCATATTACGAGAGGTGAGTTGAGC
178 CAACTCATATTACGAGAGGTGAGTTGAGC
65850894 TTCGGGTCAC
Statistics
Matches: 781, Mismatches: 108, Indels: 138
0.76 0.11 0.13
Matches are distributed among these distances:
242 1 0.00
243 45 0.06
244 79 0.10
245 44 0.06
246 153 0.20
247 23 0.03
248 85 0.11
249 50 0.06
250 64 0.08
252 11 0.01
253 10 0.01
254 94 0.12
257 1 0.00
258 2 0.00
266 52 0.07
267 1 0.00
270 16 0.02
273 7 0.01
274 30 0.04
275 12 0.02
276 1 0.00
ACGTcount: A:0.30, C:0.18, G:0.20, T:0.33
Consensus pattern (244 bp):
AAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAAGTTCAAT
TTCTGTTGTCAAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGATCACACGCCGAG
GTATTTTCAATTTTCATTTTTCAAATTTCTGCCTTTCAAAAAAAAATCAACTCATATTACGAGAG
GTGAGTTGAGCCTAGGCACGCGCTGAGCTAAGTTCAATTTCTGTCTGTC
Found at i:65850152 original size:94 final size:92
Alignment explanation
Indices: 65849980--65850159 Score: 254
Period size: 94 Copynumber: 1.9 Consensus size: 92
65849970 CTGAGGTAAG
* *
65849980 TTCAATTTCTGTTGTCAAAAAAAAATCAACTCATATTGCGAGAGGTGATTTGAGCCTTAGATCAC
1 TTCAATTTCTGTTGTCAAAAAAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTTAGATCAC
*
65850045 ACGCCGAGGTATTTTCAATTTTCGTTT
66 ACGCCGAGCTATTTTCAATTTTCGTTT
* * *
65850072 TTCAATTTCTGCCTT-TCAAAAAAAAAATCGACTCATATTACGAGAGGTGAGTTGAGCCTTGGCT
1 TTCAATTTCTG--TTGTC-AAAAAAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTTAGAT
* *
65850136 CACGCGCTGAGCTATTTTCAATTT
63 CACACGCCGAGCTATTTTCAATTT
65850160 CTGTCTTTCA
Statistics
Matches: 77, Mismatches: 8, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
92 11 0.14
93 2 0.03
94 64 0.83
ACGTcount: A:0.29, C:0.19, G:0.18, T:0.34
Consensus pattern (92 bp):
TTCAATTTCTGTTGTCAAAAAAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTTAGATCAC
ACGCCGAGCTATTTTCAATTTTCGTTT
Found at i:65850200 original size:76 final size:77
Alignment explanation
Indices: 65850069--65850531 Score: 252
Period size: 87 Copynumber: 5.7 Consensus size: 77
65850059 TCAATTTTCG
* * *
65850069 TTTTTCAATTTCTGCCTTTCAAAAAAAAAATCGACTCATATTACGAGAGGTGAGTTGAGCCTTGG
1 TTTTTCAATTTCTGTCTTTC----AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGG
* * *
65850134 CTCACGCGCTGAGCTA
62 ATCACACACTGAGCTA
*
65850150 -TTTTCAATTTCTGTCTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAG-CTTCAGATC
1 TTTTTCAATTTCTGTCTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTT-GGATC
*
65850213 ACACACTGAGGTA
65 ACACACTGAGCTA
* * *
65850226 TTTTTTTTTCAATTTATATTTTTC-AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTT-G
1 ----TTTTTCAATTTCTGTCTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGG
*
65850289 AGTCACATA-TCGAGGC-A
62 A-TCACACACT-GA-GCTA
* * *
65850306 TTTTCAAAATCTACTTTTCAAGTTAAGTTTC-AAAAATCAACTCATATTGCGAGAGGTGAGTTGA
1 TTTT-----TC-A-ATTTC-TG-T--CTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGA
*
65850370 GCCTT-GAGTCACATA-TCGAGGC-A
55 GCCTTGGA-TCACACACT-GA-GCTA
* * *
65850393 TTTTCAAAATCTACTTTTCAAGTTAAGTTTC-AAAAATCAACTCATATTGCGAGAGGTGAGTTGA
1 TTTT-----TC-A-ATTTC-TG-T--CTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGA
* ** ** *
65850457 GCC-T-CAAGACACGTTGAGGTA
55 GCCTTGGATCACACACTGAGCTA
*
65850478 -TTTTCAATTTCTGTCTTTCAAAAAAATCAGCTCATATTGCGAGAGGTGAGTTGA
1 TTTTTCAATTTCTGTCTTTC-AAAAAATCAACTCATATTGCGAGAGGTGAGTTGA
65850532 ACCTCAAGAC
Statistics
Matches: 329, Mismatches: 28, Indels: 56
0.80 0.07 0.14
Matches are distributed among these distances:
73 4 0.01
75 36 0.11
76 51 0.16
77 4 0.01
78 1 0.00
79 5 0.02
80 61 0.19
81 22 0.07
82 1 0.00
83 3 0.01
84 4 0.01
85 7 0.02
86 3 0.01
87 127 0.39
ACGTcount: A:0.30, C:0.17, G:0.19, T:0.34
Consensus pattern (77 bp):
TTTTTCAATTTCTGTCTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGATCA
CACACTGAGCTA
Found at i:65850277 original size:80 final size:84
Alignment explanation
Indices: 65850147--65850460 Score: 333
Period size: 87 Copynumber: 3.7 Consensus size: 84
65850137 ACGCGCTGAG
* *
65850147 CTATTTTCAATTTCTGTCTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAG-CTTCAGA
1 CTATTTTCAATTTATATCTTTC-AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTCAG-
*
65850211 TCACACA-CTGAGGTA-TTT-T
64 TCACACATC-GAGGCATTTTAT
* *
65850230 -T-TTTTCAATTTATATTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGAGTC
1 CTATTTTCAATTTATATCTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTCAGTC
*
65850293 ACATATCGAGGCATTTTCAAAAT
66 ACACATCGAGGCATTTT----AT
* * *
65850316 CTACTTTTCAAGTTA-A-GTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGAGT
1 CTA-TTTTCAATTTATATCTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTCAGT
*
65850379 CACATATCGAGGCATTTTCAAAAT
65 CACACATCGAGGCATTTT----AT
* *
65850403 CTACTTTTCAAGTTA-A-GTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT
1 CTA-TTTTCAATTTATATCTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT
65850461 CAAGACACGT
Statistics
Matches: 212, Mismatches: 8, Indels: 18
0.89 0.03 0.08
Matches are distributed among these distances:
80 45 0.21
81 25 0.12
82 1 0.00
86 1 0.00
87 129 0.61
88 1 0.00
89 10 0.05
ACGTcount: A:0.31, C:0.17, G:0.18, T:0.35
Consensus pattern (84 bp):
CTATTTTCAATTTATATCTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTCAGTC
ACACATCGAGGCATTTTAT
Found at i:65850347 original size:87 final size:87
Alignment explanation
Indices: 65850246--65850460 Score: 430
Period size: 87 Copynumber: 2.5 Consensus size: 87
65850236 AATTTATATT
65850246 TTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGAGTCACATATCGAGGCATTTTC
1 TTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGAGTCACATATCGAGGCATTTTC
65850311 AAAATCTACTTTTCAAGTTAAG
66 AAAATCTACTTTTCAAGTTAAG
65850333 TTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGAGTCACATATCGAGGCATTTTC
1 TTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGAGTCACATATCGAGGCATTTTC
65850398 AAAATCTACTTTTCAAGTTAAG
66 AAAATCTACTTTTCAAGTTAAG
65850420 TTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT
1 TTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT
65850461 CAAGACACGT
Statistics
Matches: 128, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
87 128 1.00
ACGTcount: A:0.32, C:0.17, G:0.19, T:0.32
Consensus pattern (87 bp):
TTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGAGTCACATATCGAGGCATTTTC
AAAATCTACTTTTCAAGTTAAG
Found at i:65850571 original size:73 final size:74
Alignment explanation
Indices: 65850424--65850564 Score: 221
Period size: 75 Copynumber: 1.9 Consensus size: 74
65850414 GTTAAGTTTC
* *
65850424 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAAGA-ACGCTGAGGTATTTTCAATTTC
65850489 TGTCTTTCAA
65 TGTCTTTCAA
* * *
65850499 AAAAATCAGCTCATATTGCGAGAGGTGAGTTGAACCTCAAG-ACGCTGAGGTGTTTTCCATTTCT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAAGAACGCTGAGGTATTTTCAATTTCT
65850563 GT
66 GT
65850565 TCTTCAATTT
Statistics
Matches: 61, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
73 22 0.36
75 39 0.64
ACGTcount: A:0.29, C:0.18, G:0.22, T:0.31
Consensus pattern (74 bp):
AAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAAGAACGCTGAGGTATTTTCAATTTCT
GTCTTTCAA
Found at i:65850677 original size:15 final size:14
Alignment explanation
Indices: 65850641--65850673 Score: 57
Period size: 14 Copynumber: 2.4 Consensus size: 14
65850631 CGCTGAGGTA
65850641 TTTTCAAATTCTGT
1 TTTTCAAATTCTGT
*
65850655 TTTTCAAATTTTGT
1 TTTTCAAATTCTGT
65850669 TTTTC
1 TTTTC
65850674 CAAAAAAAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.18, C:0.12, G:0.06, T:0.64
Consensus pattern (14 bp):
TTTTCAAATTCTGT
Found at i:65850788 original size:87 final size:87
Alignment explanation
Indices: 65850478--65850982 Score: 429
Period size: 87 Copynumber: 5.7 Consensus size: 87
65850468 CGTTGAGGTA
* * *
65850478 TTTTCAATTTCTGTCTTTCAAAAAAATCAGCTCATATTGCGAGAGGTGAGTTGAACCTCAAG--A
1 TTTTCAATTTATGT-TTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACA
* *
65850541 CGCTGAGGTGTTTTCCATTTCTGT
65 CGCTGAGGTATTTTCAATTT-TGT
* * * * * **
65850565 TCTTCAATTTCTGTGTTTCAAAAAAATC-GCTCATATTGCGAGTGGTGAGTTGAGCCTTGACTCA
1 TTTTCAATTTATGT-TTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCC-TCA-AGA
*
65850629 CACGCTGAGGTATTTTCAAATTCTGT
63 CACGCTGAGGTATTTTC-AATTTTGT
*
65850655 TTTTCAAATTT-TGTTTTTCCAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTCAGCCTCAAG
1 TTTTC-AATTTATG-TTTT-C-AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAG
*
65850719 ACACGCTGAGGTATTTTC-ATTTTTT
62 ACACGCTGAGGTATTTTCAATTTTGT
*
65850744 TTTTCAATTTATGTTTGTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGCCA
1 TTTTCAATTTATGTTT-TCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAG--A
* *
65850809 CACGCCGAGGTATTTTCAATTGATGTTTTTT
63 CACGCTGAGGTATTTTC-A---A--TTTTGT
* * * * ** *
65850840 TTTTTAATTTATGCTTTGC--AAAAATCAACTCATATTACGAGAGGTGAGTTGAGCTTCGGGTCA
1 TTTTCAATTTATG-TTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACA
** * * *
65850903 CATATCGAGATATTTTCATAATCTGT
65 C-GCT-GAGGTATTTTCA-ATTTTGT
* *
65850929 TTTACAAATTT-TGTTTT---AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCT
1 TTTTC-AATTTATGTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT
65850983 TGGCTCACGT
Statistics
Matches: 351, Mismatches: 42, Indels: 50
0.79 0.09 0.11
Matches are distributed among these distances:
86 26 0.07
87 103 0.29
88 12 0.03
89 38 0.11
90 32 0.09
91 29 0.08
92 14 0.04
93 26 0.07
94 49 0.14
96 19 0.05
97 3 0.01
ACGTcount: A:0.28, C:0.17, G:0.18, T:0.37
Consensus pattern (87 bp):
TTTTCAATTTATGTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACAC
GCTGAGGTATTTTCAATTTTGT
Found at i:65850917 original size:94 final size:95
Alignment explanation
Indices: 65850738--65850920 Score: 253
Period size: 94 Copynumber: 1.9 Consensus size: 95
65850728 GGTATTTTCA
*
65850738 TTTTTTTTTTCAATTTATGTTTGTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC
1 TTTTTTTTTTCAATTTATGTTTGTC-AAAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTC
* *
65850803 AGGCCACACGCCGAGGTATTTTCAATTGATG
65 AGGCCACACACCGAGATATTTTCAATTGATG
* *
65850834 TTTTTTTTTTTAATTTATGCTTTG-C-AAAAATCAACTCATATTACGAGAGGTGAGTTGAGCTTC
1 TTTTTTTTTTCAATTTATG-TTTGTCAAAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTC
* * * *
65850897 GGGTCACATATCGAGATATTTTCA
65 AGGCCACACACCGAGATATTTTCA
65850921 TAATCTGTTT
Statistics
Matches: 77, Mismatches: 9, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
94 54 0.70
96 19 0.25
97 4 0.05
ACGTcount: A:0.27, C:0.15, G:0.19, T:0.39
Consensus pattern (95 bp):
TTTTTTTTTTCAATTTATGTTTGTCAAAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTCA
GGCCACACACCGAGATATTTTCAATTGATG
Found at i:65850930 original size:94 final size:95
Alignment explanation
Indices: 65850738--65850982 Score: 244
Period size: 94 Copynumber: 2.7 Consensus size: 95
65850728 GGTATTTTCA
*
65850738 TTTTTTTTTTCAATTTATGTTTGTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC
1 TTTTTTTTTTCAATTTATGTTTGTC-AAAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTC
* * *
65850803 AGGCCACACGCCGAGGTATTTTCAATTGATG
65 AGGCCACACACCGAGATATTTTCAAATGATG
* *
65850834 TTTTTTTTTTTAATTTATGCTTTG-C-AAAAATCAACTCATATTACGAGAGGTGAGTTGAGCTTC
1 TTTTTTTTTTCAATTTATG-TTTGTCAAAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTC
* * * * *
65850897 GGGTCACATATCGAGATATTTTCATAAT-CTG
65 AGGCCACACACCGAGATATTTTCA-AATGATG
* * *
65850928 -----TTTTACAAATTT-TGTTT-T--AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCT
1 TTTTTTTTTTC-AATTTATGTTTGTCAAAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCT
65850983 TGGCTCACGT
Statistics
Matches: 129, Mismatches: 16, Indels: 17
0.80 0.10 0.10
Matches are distributed among these distances:
87 34 0.26
88 3 0.02
89 6 0.05
90 5 0.04
94 56 0.43
95 2 0.02
96 19 0.15
97 4 0.03
ACGTcount: A:0.29, C:0.15, G:0.18, T:0.39
Consensus pattern (95 bp):
TTTTTTTTTTCAATTTATGTTTGTCAAAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTCA
GGCCACACACCGAGATATTTTCAAATGATG
Found at i:65851004 original size:87 final size:87
Alignment explanation
Indices: 65850499--65851056 Score: 346
Period size: 87 Copynumber: 6.3 Consensus size: 87
65850489 TGTCTTTCAA
* * * * *
65850499 AAAAATCAGCTCATATTGCGAGAGGTGAGTTGAACC-T--C-AAGACGCTGAGGTGTTTTCCAT-
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACACGCTGAGGTATTTT-CATA
* *
65850559 TTCTGTTCTTC-AATTTCTGTGTTT
65 ATCTGTTTTTCAAATTT-TGT-TTT
* * *
65850583 CAAAAAAATC-GCTCATATTGCGAGTGGTGAGTTGAGCCTTGACTCACACGCTGAGGTATTTTCA
1 ---AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACACGCTGAGGTATTTTCA
65850647 -AATTCTGTTTTTCAAATTTTGTTTTT
63 TAA-TCTGTTTTTCAAATTTTG-TTTT
* **
65850673 CCAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTCAGCC-T--CAAGACACGCTGAGGTATTT
1 -----AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGC-TCACACGCTGAGGTATTT
* *
65850735 TCAT--TTTTTTTTTC-AATTTATGTTTGT
60 TCATAATCTGTTTTTCAAATTT-TGTTT-T
* *
65850762 CAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGC-CACACGCCGAGGTATTTTC
1 ---AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT-TGGCTCACACGCTGAGGTATTTTC
* * * ** *
65850826 AATTGATGTTTTTTTTTTTAATTTATGCTTTGC
62 -A-T-A-ATCTGTTTTTCAAATTT-TG-TTT-T
* * ** *
65850859 AAAAATCAACTCATATTACGAGAGGTGAGTTGAG-CTTCGGGTCACA-TATCGAGATATTTTCAT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTT-GGCTCACACGCT-GAGGTATTTTCAT
*
65850922 AATCTGTTTTACAAATTTTGTTTT
64 AATCTGTTTTTCAAATTTTGTTTT
* ** *
65850946 AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTTGGCTCACGTGCTGAGCTATTTTCA-AT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACACGCTGAGGTATTTTCATA-
* *
65851010 TTCTGTTTTT--AATGTCTAGTTTT
65 ATCTGTTTTTCAAAT-T-TTGTTTT
* *
65851033 AAAGAGTCAATTCATATTGCGAGA
1 AAA-AATCAACTCATATTGCGAGA
65851057 AATGAGTTAA
Statistics
Matches: 387, Mismatches: 48, Indels: 71
0.76 0.09 0.14
Matches are distributed among these distances:
85 3 0.01
86 28 0.07
87 111 0.29
88 33 0.09
89 33 0.09
90 42 0.11
91 28 0.07
92 11 0.03
93 30 0.08
94 47 0.12
95 9 0.02
96 8 0.02
97 4 0.01
ACGTcount: A:0.28, C:0.16, G:0.19, T:0.37
Consensus pattern (87 bp):
AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACACGCTGAGGTATTTTCATAA
TCTGTTTTTCAAATTTTGTTTT
Found at i:65851160 original size:21 final size:21
Alignment explanation
Indices: 65851134--65851175 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
65851124 TTTATATCCC
65851134 TGAAGTTACAGTGAAGCTAAT
1 TGAAGTTACAGTGAAGCTAAT
* *
65851155 TGAAGTTGCAGTGGAGCTAAT
1 TGAAGTTACAGTGAAGCTAAT
65851176 CGAGGATATC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.33, C:0.10, G:0.29, T:0.29
Consensus pattern (21 bp):
TGAAGTTACAGTGAAGCTAAT
Found at i:65857279 original size:14 final size:13
Alignment explanation
Indices: 65857231--65857284 Score: 65
Period size: 14 Copynumber: 3.9 Consensus size: 13
65857221 ATAAATATTT
65857231 TATTTTTTAAAAA
1 TATTTTTTAAAAA
65857244 TATTTTTTGAGAACAA
1 TATTTTTT-A-AA-AA
65857260 TA-TTTTTAAAAA
1 TATTTTTTAAAAA
65857272 TACTTTTTTAAAA
1 TA-TTTTTTAAAA
65857285 TCAGCAGCCC
Statistics
Matches: 36, Mismatches: 0, Indels: 9
0.80 0.00 0.20
Matches are distributed among these distances:
12 4 0.11
13 10 0.28
14 11 0.31
15 7 0.19
16 4 0.11
ACGTcount: A:0.43, C:0.04, G:0.04, T:0.50
Consensus pattern (13 bp):
TATTTTTTAAAAA
Found at i:65857285 original size:13 final size:12
Alignment explanation
Indices: 65857234--65857285 Score: 50
Period size: 13 Copynumber: 3.9 Consensus size: 12
65857224 AATATTTTAT
65857234 TTTTTAAAAATA
1 TTTTTAAAAATA
65857246 TTTTTTGAGAACAATA
1 -TTTTT-A-AA-AATA
65857262 TTTTTAAAAATA
1 TTTTTAAAAATA
*
65857274 CTTTTTTAAAAT
1 -TTTTTAAAAAT
65857286 CAGCAGCCCT
Statistics
Matches: 34, Mismatches: 1, Indels: 8
0.79 0.02 0.19
Matches are distributed among these distances:
12 4 0.12
13 17 0.50
14 2 0.06
15 7 0.21
16 4 0.12
ACGTcount: A:0.42, C:0.04, G:0.04, T:0.50
Consensus pattern (12 bp):
TTTTTAAAAATA
Found at i:65868445 original size:11 final size:11
Alignment explanation
Indices: 65868438--65868479 Score: 57
Period size: 11 Copynumber: 3.8 Consensus size: 11
65868428 CAAAAAATAG
65868438 CACCAAAACAA
1 CACCAAAACAA
*
65868449 CACCCAAACAA
1 CACCAAAACAA
*
65868460 CACCAAAACAG
1 CACCAAAACAA
*
65868471 CACCCAAAC
1 CACCAAAAC
65868480 TGCAGCAAAA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
11 27 1.00
ACGTcount: A:0.55, C:0.43, G:0.02, T:0.00
Consensus pattern (11 bp):
CACCAAAACAA
Found at i:65868492 original size:22 final size:22
Alignment explanation
Indices: 65868438--65868479 Score: 75
Period size: 22 Copynumber: 1.9 Consensus size: 22
65868428 CAAAAAATAG
*
65868438 CACCAAAACAACACCCAAACAA
1 CACCAAAACAGCACCCAAACAA
65868460 CACCAAAACAGCACCCAAAC
1 CACCAAAACAGCACCCAAAC
65868480 TGCAGCAAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.55, C:0.43, G:0.02, T:0.00
Consensus pattern (22 bp):
CACCAAAACAGCACCCAAACAA
Found at i:65869064 original size:28 final size:28
Alignment explanation
Indices: 65869011--65869064 Score: 81
Period size: 28 Copynumber: 1.9 Consensus size: 28
65869001 CATGCCATAC
* *
65869011 TATTTTTCAATTTAATCCCTCCTTCTTT
1 TATTCTTCAATTTAATCCCTCATTCTTT
*
65869039 TATTCTTCAATTTAATCCCTTATTCT
1 TATTCTTCAATTTAATCCCTCATTCT
65869065 GTTAAGTATT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
28 23 1.00
ACGTcount: A:0.20, C:0.24, G:0.00, T:0.56
Consensus pattern (28 bp):
TATTCTTCAATTTAATCCCTCATTCTTT
Found at i:65875017 original size:21 final size:21
Alignment explanation
Indices: 65874993--65875040 Score: 78
Period size: 21 Copynumber: 2.3 Consensus size: 21
65874983 CATCTTAAAG
65874993 GCTGCAGAACAGTTTGTCATC
1 GCTGCAGAACAGTTTGTCATC
*
65875014 GCTGCGGAACAGTTTGTCATC
1 GCTGCAGAACAGTTTGTCATC
*
65875035 ACTGCA
1 GCTGCA
65875041 AAGAAGCTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.23, C:0.25, G:0.25, T:0.27
Consensus pattern (21 bp):
GCTGCAGAACAGTTTGTCATC
Found at i:65877464 original size:41 final size:39
Alignment explanation
Indices: 65877419--65877555 Score: 118
Period size: 41 Copynumber: 3.4 Consensus size: 39
65877409 ATTTTATAGT
* *
65877419 ATTATATATTATGATTTTAGTAAATTATATATTTTTGTTAA
1 ATTATATATTATAATTTTAATAAATTATATA-TTTT-TTAA
** *
65877460 ATTATAT-TTAATAATAATTATTTTAAA-T-TATATTTTATAA
1 ATTATATATT-ATAAT--TT-TAATAAATTATATATTTTTTAA
*
65877500 TATTATATATTATAATTTTAATAAATTCATATATTTTATCAA
1 -ATTATATATTATAATTTTAATAAATT-ATATATTTT-TTAA
65877542 ATTATATATTATAA
1 ATTATATATTATAA
65877556 AAAAATATAT
Statistics
Matches: 78, Mismatches: 8, Indels: 20
0.74 0.08 0.19
Matches are distributed among these distances:
38 5 0.06
39 3 0.04
40 5 0.06
41 49 0.63
42 8 0.10
43 3 0.04
44 5 0.06
ACGTcount: A:0.42, C:0.01, G:0.02, T:0.54
Consensus pattern (39 bp):
ATTATATATTATAATTTTAATAAATTATATATTTTTTAA
Found at i:65877490 original size:26 final size:25
Alignment explanation
Indices: 65877447--65877505 Score: 82
Period size: 26 Copynumber: 2.3 Consensus size: 25
65877437 AGTAAATTAT
*
65877447 ATATTTTTGTTAAATTATATTTAATA
1 ATATTATT-TTAAATTATATTTAATA
*
65877473 ATAATTATTTTAAATTATATTTTATA
1 AT-ATTATTTTAAATTATATTTAATA
65877499 ATATTAT
1 ATATTAT
65877506 ATATTATAAT
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
25 5 0.17
26 20 0.67
27 5 0.17
ACGTcount: A:0.41, C:0.00, G:0.02, T:0.58
Consensus pattern (25 bp):
ATATTATTTTAAATTATATTTAATA
Found at i:65877531 original size:24 final size:22
Alignment explanation
Indices: 65877486--65877554 Score: 67
Period size: 22 Copynumber: 3.3 Consensus size: 22
65877476 ATTATTTTAA
65877486 ATTATATTTTATAATATTATAT
1 ATTATATTTTATAATATTATAT
* *
65877508 ATTATAATTT-TAATA-AAT-T
1 ATTATATTTTATAATATTATAT
65877527 CA-TATATTTTATCAA-ATTATAT
1 -ATTATATTTTAT-AATATTATAT
65877549 ATTATA
1 ATTATA
65877555 AAAAAATATA
Statistics
Matches: 37, Mismatches: 4, Indels: 12
0.70 0.08 0.23
Matches are distributed among these distances:
19 8 0.22
20 5 0.14
21 10 0.27
22 14 0.38
ACGTcount: A:0.43, C:0.03, G:0.00, T:0.54
Consensus pattern (22 bp):
ATTATATTTTATAATATTATAT
Found at i:65877535 original size:67 final size:69
Alignment explanation
Indices: 65877355--65877531 Score: 195
Period size: 70 Copynumber: 2.6 Consensus size: 69
65877345 AATCATAAGA
* * **
65877355 ATATT-TAATTTTATTAAATTATATATTTTTGTTAAATTATATTTAATAATAATAATTTTATAGT
1 ATATTATAATATTAGTAAATTATATATTTTTAATAAATTATATTTAATAATAATAATTTTATAG-
65877419 ATTAT
65 ATTAT
* * ** *
65877424 ATATTATGATTTTAGTAAATTATATATTTTTGTTAAATTATATTTAATAATAATTATTTTA-A-A
1 ATATTATAATATTAGTAAATTATATATTTTTAATAAATTATATTTAATAATAATAATTTTATAGA
65877487 TTAT
66 TTAT
* *
65877491 ATTTTATAATATTA-TATATTATA-A-TTTTAATAAATTCATAT
1 ATATTATAATATTAGTAAATTATATATTTTTAATAAATT-ATAT
65877532 ATTTTATCAA
Statistics
Matches: 97, Mismatches: 9, Indels: 8
0.85 0.08 0.07
Matches are distributed among these distances:
64 10 0.10
65 5 0.05
66 8 0.08
67 16 0.16
69 6 0.06
70 52 0.54
ACGTcount: A:0.41, C:0.01, G:0.03, T:0.55
Consensus pattern (69 bp):
ATATTATAATATTAGTAAATTATATATTTTTAATAAATTATATTTAATAATAATAATTTTATAGA
TTAT
Found at i:65877537 original size:18 final size:17
Alignment explanation
Indices: 65877508--65877551 Score: 56
Period size: 17 Copynumber: 2.6 Consensus size: 17
65877498 AATATTATAT
65877508 ATTATA-ATTTTAAT-AA
1 ATTATATATTTT-ATCAA
65877524 ATTCATATATTTTATCAA
1 ATT-ATATATTTTATCAA
65877542 ATTATATATT
1 ATTATATATT
65877552 ATAAAAAAAT
Statistics
Matches: 25, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
16 3 0.12
17 12 0.48
18 10 0.40
ACGTcount: A:0.43, C:0.05, G:0.00, T:0.52
Consensus pattern (17 bp):
ATTATATATTTTATCAA
Found at i:65877550 original size:17 final size:17
Alignment explanation
Indices: 65877362--65877572 Score: 63
Period size: 18 Copynumber: 12.6 Consensus size: 17
65877352 AGAATATTTA
*
65877362 ATTTTATTAAATTATAT
1 ATTTTAATAAATTATAT
**
65877379 ATTTTTGTTAAATTATAT
1 A-TTTTAATAAATTATAT
* *
65877397 -TTAATAATAATAATTTTAT
1 ATT-TTAAT-A-AATTATAT
* * *
65877416 AGTATT-ATATATTAT-G
1 A-TTTTAATAAATTATAT
*
65877432 ATTTTAGTAAATTATAT
1 ATTTTAATAAATTATAT
**
65877449 ATTTTTGTTAAA-T-TAT
1 A-TTTTAATAAATTATAT
*
65877465 A-TTTAAT-AATAAT-T
1 ATTTTAATAAATTATAT
* *
65877479 ATTTTAAATTATATTTTAT
1 ATTTT-AA-TAAATTATAT
* *
65877498 AATATT-ATATATTATA-
1 -ATTTTAATAAATTATAT
65877514 ATTTTAATAAATTCATAT
1 ATTTTAATAAATT-ATAT
65877532 ATTTT-ATCAAATTATAT
1 ATTTTAAT-AAATTATAT
* *
65877549 ATTATAA-AAA-AATAT
1 ATTTTAATAAATTATAT
65877564 A-TTTAATAA
1 ATTTTAATAA
65877573 TAATTATGTT
Statistics
Matches: 142, Mismatches: 29, Indels: 48
0.65 0.13 0.22
Matches are distributed among these distances:
13 2 0.01
14 10 0.07
15 18 0.13
16 25 0.18
17 31 0.22
18 40 0.28
19 10 0.07
20 5 0.04
21 1 0.01
ACGTcount: A:0.44, C:0.01, G:0.02, T:0.53
Consensus pattern (17 bp):
ATTTTAATAAATTATAT
Found at i:65877821 original size:16 final size:16
Alignment explanation
Indices: 65877800--65877867 Score: 109
Period size: 16 Copynumber: 4.2 Consensus size: 16
65877790 GATTTGCTAT
65877800 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
* *
65877816 TACACCTCTATTCCAT
1 TACACCTCTAATCCAA
65877832 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
*
65877848 TACACCTGTAATCCAA
1 TACACCTCTAATCCAA
65877864 TACA
1 TACA
65877868 GCGAACCAAA
Statistics
Matches: 47, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 47 1.00
ACGTcount: A:0.35, C:0.35, G:0.01, T:0.28
Consensus pattern (16 bp):
TACACCTCTAATCCAA
Found at i:65885339 original size:49 final size:50
Alignment explanation
Indices: 65885249--65885349 Score: 177
Period size: 50 Copynumber: 2.0 Consensus size: 50
65885239 TAAATGCTAA
*
65885249 AATTATTTAAACAACTAAAAAAAATTCAAAACAACTTAATTAATTAAACT
1 AATTATTTAAACAACTAAAAAAAATTCAAAACAACTGAATTAATTAAACT
*
65885299 AATTATTTAAGCAACTAAAAAAAATT-AAAACAACTGAATTAATTAAACT
1 AATTATTTAAACAACTAAAAAAAATTCAAAACAACTGAATTAATTAAACT
65885348 AA
1 AA
65885350 ACATATCAAA
Statistics
Matches: 49, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
49 24 0.49
50 25 0.51
ACGTcount: A:0.58, C:0.11, G:0.02, T:0.29
Consensus pattern (50 bp):
AATTATTTAAACAACTAAAAAAAATTCAAAACAACTGAATTAATTAAACT
Found at i:65887311 original size:46 final size:46
Alignment explanation
Indices: 65887259--65887523 Score: 222
Period size: 46 Copynumber: 5.7 Consensus size: 46
65887249 TGTGTGTGCT
* *
65887259 AGTGTAAGACATGTCTGGGACATGCATTGGCCATATTATGAGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCATATGATGAGAGCC
* * * *
65887305 AATGTAAGATCATATCTGGGACATGGCATCGG-CAT-TGAGACGAGAGCT
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCATAT--GATGAGAGCC
*
65887353 AGTGTAAGACATGTCTGGGACATGCATCGGCCTTGA-GATGTA-AGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCAT-ATGATG-AGAGCC
* * *
65887399 AGTGTAAGACATGTCTGGGACATGCATCGG-C-TACGA-GATGTGCT
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCATATGATGA-GAGCC
* * * *
65887443 AGTGTATGACATGTCTAGGACATGCATTGGCACAGATATG-TGAGATCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGC-C--ATATGATGAGAGCC
* *
65887491 AGTGTAAAACCATGTCTGGGAAATGGCATCGGC
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGC
65887524 ATTATACCCT
Statistics
Matches: 175, Mismatches: 25, Indels: 34
0.75 0.11 0.15
Matches are distributed among these distances:
42 1 0.01
43 2 0.01
44 32 0.18
45 1 0.01
46 53 0.30
47 32 0.18
48 30 0.17
49 17 0.10
50 7 0.04
ACGTcount: A:0.28, C:0.18, G:0.29, T:0.25
Consensus pattern (46 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCCATATGATGAGAGCC
Found at i:65894431 original size:24 final size:25
Alignment explanation
Indices: 65894398--65894444 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
65894388 AACTAACATC
*
65894398 ACATAGCTC-AAATACTCATCAATG
1 ACATAACTCAAAATACTCATCAATG
*
65894422 ACATAACTCAAAATATTCATCAA
1 ACATAACTCAAAATACTCATCAA
65894445 AATCAAAAAT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
24 8 0.40
25 12 0.60
ACGTcount: A:0.47, C:0.23, G:0.04, T:0.26
Consensus pattern (25 bp):
ACATAACTCAAAATACTCATCAATG
Found at i:65897957 original size:9 final size:9
Alignment explanation
Indices: 65897943--65897978 Score: 54
Period size: 9 Copynumber: 3.8 Consensus size: 9
65897933 ACAAGTCTTA
65897943 TTTTAATTT
1 TTTTAATTT
65897952 TTTTAATTT
1 TTTTAATTT
65897961 ATTTTAGATTT
1 -TTTTA-ATTT
65897972 TTTTAAT
1 TTTTAAT
65897979 CTAGTCATAT
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
9 11 0.44
10 10 0.40
11 4 0.16
ACGTcount: A:0.25, C:0.00, G:0.03, T:0.72
Consensus pattern (9 bp):
TTTTAATTT
Found at i:65897964 original size:19 final size:20
Alignment explanation
Indices: 65897940--65897978 Score: 71
Period size: 20 Copynumber: 2.0 Consensus size: 20
65897930 TTAACAAGTC
65897940 TTATTTTA-ATTTTTTTAAT
1 TTATTTTAGATTTTTTTAAT
65897959 TTATTTTAGATTTTTTTAAT
1 TTATTTTAGATTTTTTTAAT
65897979 CTAGTCATAT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 8 0.42
20 11 0.58
ACGTcount: A:0.26, C:0.00, G:0.03, T:0.72
Consensus pattern (20 bp):
TTATTTTAGATTTTTTTAAT
Found at i:65906154 original size:27 final size:27
Alignment explanation
Indices: 65906116--65906170 Score: 101
Period size: 27 Copynumber: 2.0 Consensus size: 27
65906106 CTATTCTCTT
65906116 CTCCATCAACCCCAACCAAGTAAACCA
1 CTCCATCAACCCCAACCAAGTAAACCA
*
65906143 CTCCATCAACCCTAACCAAGTAAACCA
1 CTCCATCAACCCCAACCAAGTAAACCA
65906170 C
1 C
65906171 CCACCTCAAT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.40, C:0.44, G:0.04, T:0.13
Consensus pattern (27 bp):
CTCCATCAACCCCAACCAAGTAAACCA
Found at i:65907423 original size:17 final size:18
Alignment explanation
Indices: 65907393--65907438 Score: 64
Period size: 18 Copynumber: 2.8 Consensus size: 18
65907383 ATTTAAATTG
65907393 CGGTCGCGGTCGCGTTTT
1 CGGTCGCGGTCGCGTTTT
65907411 CGGTCGC-GTCGCG-TTT
1 CGGTCGCGGTCGCGTTTT
65907427 --GTCGCGGTCGCG
1 CGGTCGCGGTCGCG
65907439 GACATAACGG
Statistics
Matches: 27, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
14 5 0.19
15 6 0.22
16 3 0.11
17 6 0.22
18 7 0.26
ACGTcount: A:0.00, C:0.30, G:0.41, T:0.28
Consensus pattern (18 bp):
CGGTCGCGGTCGCGTTTT
Found at i:65919449 original size:22 final size:22
Alignment explanation
Indices: 65919414--65919464 Score: 61
Period size: 22 Copynumber: 2.4 Consensus size: 22
65919404 AATTAAGCTT
*
65919414 AATA-TTA-TTTTATTTATAAT
1 AATATTTATTTTTATTTATAAA
* *
65919434 AATTTTTATTTTTATTTTTAAA
1 AATATTTATTTTTATTTATAAA
65919456 AATATTTAT
1 AATATTTAT
65919465 AATTATTAAA
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
20 3 0.12
21 3 0.12
22 19 0.76
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (22 bp):
AATATTTATTTTTATTTATAAA
Found at i:65919586 original size:22 final size:21
Alignment explanation
Indices: 65919546--65919607 Score: 63
Period size: 22 Copynumber: 3.0 Consensus size: 21
65919536 TTAGTCATAT
* *
65919546 AATAAATTATTAATATAATTA
1 AATAAATTATTATTTTAATTA
65919567 ATATAAATTATTATTTTAA-TA
1 A-ATAAATTATTATTTTAATTA
* * *
65919588 AATTATTTAATATTTTAATT
1 AATAAATTATTATTTTAATT
65919608 TTATTTTAAT
Statistics
Matches: 34, Mismatches: 5, Indels: 4
0.79 0.12 0.09
Matches are distributed among these distances:
20 14 0.41
21 5 0.15
22 15 0.44
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (21 bp):
AATAAATTATTATTTTAATTA
Found at i:65922165 original size:27 final size:27
Alignment explanation
Indices: 65922135--65922186 Score: 70
Period size: 27 Copynumber: 1.9 Consensus size: 27
65922125 ATCACACACT
*
65922135 ATTTTATACTATATTCAAT-TCATTCTA
1 ATTTTAT-CAATATTCAATATCATTCTA
*
65922162 ATTTTCTCAATATTCAATATCATTC
1 ATTTTATCAATATTCAATATCATTC
65922187 AATATGAATA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 10 0.45
27 12 0.55
ACGTcount: A:0.33, C:0.17, G:0.00, T:0.50
Consensus pattern (27 bp):
ATTTTATCAATATTCAATATCATTCTA
Found at i:65932501 original size:21 final size:21
Alignment explanation
Indices: 65932475--65932515 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
65932465 ATCTGCTCAA
* *
65932475 ACTCCACCTGTTTTGGAGTAC
1 ACTCCACCTGCTGTGGAGTAC
65932496 ACTCCACCTGCTGTGGAGTA
1 ACTCCACCTGCTGTGGAGTA
65932516 TTGCTCGTCT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.20, C:0.29, G:0.22, T:0.29
Consensus pattern (21 bp):
ACTCCACCTGCTGTGGAGTAC
Found at i:65939822 original size:3 final size:3
Alignment explanation
Indices: 65939808--65939867 Score: 68
Period size: 3 Copynumber: 19.7 Consensus size: 3
65939798 TATTAAATTA
*
65939808 ATT ATT ACT ATT ATT ATT ATT ATT ATT -TAT ATT CATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT AT-T ATT -ATT ATT ATT ATT
* *
65939854 ACT ATT ATT TTT AT
1 ATT ATT ATT ATT AT
65939868 GATCATTTTT
Statistics
Matches: 48, Mismatches: 6, Indels: 6
0.80 0.10 0.10
Matches are distributed among these distances:
2 1 0.02
3 43 0.90
4 4 0.08
ACGTcount: A:0.32, C:0.05, G:0.00, T:0.63
Consensus pattern (3 bp):
ATT
Found at i:65939823 original size:12 final size:12
Alignment explanation
Indices: 65939791--65939862 Score: 58
Period size: 12 Copynumber: 5.8 Consensus size: 12
65939781 TGTTATTTCG
65939791 ACTATT-TTATT
1 ACTATTATTATT
*
65939802 A-AATTAATTATT
1 ACTATT-ATTATT
65939814 ACTATTATTATT
1 ACTATTATTATT
*
65939826 ATTATTATTTATATT
1 ACTATTA--T-TATT
*
65939841 CATTATTATTATT
1 -ACTATTATTATT
65939854 ACTATTATT
1 ACTATTATT
65939863 TTTATGATCA
Statistics
Matches: 50, Mismatches: 4, Indels: 13
0.75 0.06 0.19
Matches are distributed among these distances:
10 3 0.06
11 1 0.02
12 26 0.52
13 7 0.14
14 2 0.04
15 4 0.08
16 7 0.14
ACGTcount: A:0.35, C:0.06, G:0.00, T:0.60
Consensus pattern (12 bp):
ACTATTATTATT
Found at i:65940042 original size:61 final size:60
Alignment explanation
Indices: 65939970--65940110 Score: 189
Period size: 61 Copynumber: 2.3 Consensus size: 60
65939960 GATTTTTTTA
65939970 TTATTTCATTTATT-ATTCCTCTATTATT-TTATTTATT-TCATTATTATTATCTTATTATATAT
1 TTATTT-ATTTATTCATT--TCTATT-TTGTT-TTTATTCTCATTATTATTATCTTATTATATAT
* *
65940032 TTATTTATTTATTTCATTTTTATTTTGTTTTTGTTCTCATTATTATTATCTTATTATATAT
1 TTATTTATTTA-TTCATTTCTATTTTGTTTTTATTCTCATTATTATTATCTTATTATATAT
65940093 TTATTTATTTATTCATTT
1 TTATTTATTTATTCATTT
65940111 ATGTCTTTAT
Statistics
Matches: 73, Mismatches: 2, Indels: 10
0.86 0.02 0.12
Matches are distributed among these distances:
60 14 0.19
61 48 0.66
62 8 0.11
63 3 0.04
ACGTcount: A:0.23, C:0.08, G:0.01, T:0.67
Consensus pattern (60 bp):
TTATTTATTTATTCATTTCTATTTTGTTTTTATTCTCATTATTATTATCTTATTATATAT
Found at i:65942125 original size:18 final size:20
Alignment explanation
Indices: 65942083--65942119 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
65942073 ATATTTTATG
*
65942083 ATTA-TTTAATTAGATATAT
1 ATTATTTTAATGAGATATAT
65942102 ATTATTTTAATGAGATAT
1 ATTATTTTAATGAGATAT
65942120 TTTATTATTA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
19 4 0.25
20 12 0.75
ACGTcount: A:0.41, C:0.00, G:0.08, T:0.51
Consensus pattern (20 bp):
ATTATTTTAATGAGATATAT
Found at i:65944331 original size:46 final size:46
Alignment explanation
Indices: 65944279--65944418 Score: 183
Period size: 46 Copynumber: 3.0 Consensus size: 46
65944269 GTGTGCTCTC
* *
65944279 TGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACG
1 TGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACA
**
65944325 TGATATGAAATGAACAAGACCATGGTTGAAAGATACCATGGCAACA
1 TGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACA
* * * * *
65944371 TGACA-GAAAATGAGTAAGACCATAGTTGAAAGACACTATGGCATCA
1 TGATATG-AAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACA
65944417 TG
1 TG
65944419 TCAAAGATAA
Statistics
Matches: 82, Mismatches: 11, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
45 1 0.01
46 81 0.99
ACGTcount: A:0.41, C:0.14, G:0.24, T:0.21
Consensus pattern (46 bp):
TGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACA
Found at i:65945805 original size:16 final size:16
Alignment explanation
Indices: 65945783--65945845 Score: 81
Period size: 16 Copynumber: 3.9 Consensus size: 16
65945773 CACTATAGTG
65945783 GAATAGAGCTGTAATT
1 GAATAGAGCTGTAATT
* *
65945799 AAATAGAGTTGTAATT
1 GAATAGAGCTGTAATT
* * *
65945815 GAATACAACTGTAATG
1 GAATAGAGCTGTAATT
65945831 GAATAGAGCTGTAAT
1 GAATAGAGCTGTAAT
65945846 CAGTAATTCA
Statistics
Matches: 38, Mismatches: 9, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
16 38 1.00
ACGTcount: A:0.41, C:0.06, G:0.22, T:0.30
Consensus pattern (16 bp):
GAATAGAGCTGTAATT
Found at i:65950753 original size:22 final size:22
Alignment explanation
Indices: 65950711--65950753 Score: 52
Period size: 22 Copynumber: 2.0 Consensus size: 22
65950701 GTTTAGTGAC
**
65950711 TATTTTTATAGTTTACTATTTT
1 TATTTTTATAGTTTAAAATTTT
65950733 TATTTTTATAG-TTAGAAATTT
1 TATTTTTATAGTTTA-AAATTT
65950754 AAATAATATT
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
21 3 0.17
22 15 0.83
ACGTcount: A:0.28, C:0.02, G:0.07, T:0.63
Consensus pattern (22 bp):
TATTTTTATAGTTTAAAATTTT
Found at i:65951516 original size:10 final size:10
Alignment explanation
Indices: 65951501--65951526 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
65951491 CTTCTTCTTT
65951501 TTTTTTTTTG
1 TTTTTTTTTG
65951511 TTTTTTTTTG
1 TTTTTTTTTG
65951521 TTTTTT
1 TTTTTT
65951527 GCAGTTAGGG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.00, C:0.00, G:0.08, T:0.92
Consensus pattern (10 bp):
TTTTTTTTTG
Found at i:65967821 original size:10 final size:10
Alignment explanation
Indices: 65967806--65967866 Score: 61
Period size: 10 Copynumber: 5.9 Consensus size: 10
65967796 ATATTGTTAT
65967806 ACATGATATG
1 ACATGATATG
65967816 ACATGATATG
1 ACATGATATG
65967826 CACATGATATG
1 -ACATGATATG
** *
65967837 TTATGAGATG
1 ACATGATATG
65967847 CACATGATATG
1 -ACATGATATG
65967858 -CTATGATAT
1 AC-ATGATAT
65967867 ACTCATTATA
Statistics
Matches: 42, Mismatches: 6, Indels: 6
0.78 0.11 0.11
Matches are distributed among these distances:
9 1 0.02
10 24 0.57
11 17 0.40
ACGTcount: A:0.36, C:0.11, G:0.20, T:0.33
Consensus pattern (10 bp):
ACATGATATG
Found at i:65967831 original size:21 final size:20
Alignment explanation
Indices: 65967806--65967882 Score: 82
Period size: 21 Copynumber: 3.7 Consensus size: 20
65967796 ATATTGTTAT
65967806 ACATGATATGACATGATATGC
1 ACATGATATG-CATGATATGC
* *
65967827 ACATGATATGTTATGAGATGC
1 ACATGATATG-CATGATATGC
*
65967848 ACATGATATGCTATGATATAC
1 ACATGATATGC-ATGATATGC
* *
65967869 TCATTATATGCATG
1 ACATGATATGCATG
65967883 GATTGGGTTT
Statistics
Matches: 47, Mismatches: 8, Indels: 3
0.81 0.14 0.05
Matches are distributed among these distances:
20 3 0.06
21 44 0.94
ACGTcount: A:0.35, C:0.13, G:0.18, T:0.34
Consensus pattern (20 bp):
ACATGATATGCATGATATGC
Found at i:65970205 original size:31 final size:31
Alignment explanation
Indices: 65970154--65970222 Score: 72
Period size: 31 Copynumber: 2.3 Consensus size: 31
65970144 ATTAATTTAT
65970154 TTAAA-AATTAAGTTAAAAGATATTTATTA-A
1 TTAAATAATTAAGTTAAAAGAT-TTTATTACA
* *
65970184 TTAAATAATTATA-TTATAAGATTTTTTTACA
1 TTAAATAATTA-AGTTAAAAGATTTTATTACA
*
65970215 ATAAATAA
1 TTAAATAA
65970223 ATAAAAGAAA
Statistics
Matches: 33, Mismatches: 3, Indels: 5
0.80 0.07 0.12
Matches are distributed among these distances:
30 11 0.33
31 21 0.64
32 1 0.03
ACGTcount: A:0.51, C:0.01, G:0.04, T:0.43
Consensus pattern (31 bp):
TTAAATAATTAAGTTAAAAGATTTTATTACA
Found at i:65970409 original size:22 final size:22
Alignment explanation
Indices: 65970367--65970409 Score: 52
Period size: 22 Copynumber: 2.0 Consensus size: 22
65970357 TAAATGAAAT
* *
65970367 AAAAGAAACAAAAGTATAAAAC
1 AAAAGAAACAAAAGCAAAAAAC
65970389 AAAAGAAAC-AAAGCCAAAAAA
1 AAAAGAAACAAAAG-CAAAAAA
65970410 AAGAAAAATA
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
21 4 0.22
22 14 0.78
ACGTcount: A:0.74, C:0.12, G:0.09, T:0.05
Consensus pattern (22 bp):
AAAAGAAACAAAAGCAAAAAAC
Found at i:65971773 original size:24 final size:24
Alignment explanation
Indices: 65971746--65971794 Score: 98
Period size: 24 Copynumber: 2.0 Consensus size: 24
65971736 AAATATAAAA
65971746 TGAATTAGTATAATATCTATATTT
1 TGAATTAGTATAATATCTATATTT
65971770 TGAATTAGTATAATATCTATATTT
1 TGAATTAGTATAATATCTATATTT
65971794 T
1 T
65971795 ATTATTGTTA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.37, C:0.04, G:0.08, T:0.51
Consensus pattern (24 bp):
TGAATTAGTATAATATCTATATTT
Found at i:65973651 original size:43 final size:43
Alignment explanation
Indices: 65973515--65973684 Score: 150
Period size: 43 Copynumber: 4.0 Consensus size: 43
65973505 ATAAAGCTCG
* * *
65973515 TACAATGCCAA-ATCCCAGATATGGTCTTACATGTTATCAC-A
1 TACAATGCCAATGTCCCAGACATGGTCTTACATGTAATCACAA
* * * * * * *
65973556 TATCGATGCCATTGTCCCAGATAGGGTCTTACACGAAATCGATTAA
1 TA-CAATGCCAATGTCCCAGACATGGTCTTACATGTAATC-A-CAA
* *
65973602 T--GATGCCAATGTCCCAGACATGGTCATACATGTAATCACAA
1 TACAATGCCAATGTCCCAGACATGGTCTTACATGTAATCACAA
* * *
65973643 TACAATGCCAATGTCTCAAACATGGTCTTACATATAATCACA
1 TACAATGCCAATGTCCCAGACATGGTCTTACATGTAATCACA
65973685 TCTCGGTAAT
Statistics
Matches: 102, Mismatches: 20, Indels: 12
0.76 0.15 0.09
Matches are distributed among these distances:
41 5 0.05
42 8 0.08
43 86 0.84
44 1 0.01
46 2 0.02
ACGTcount: A:0.34, C:0.24, G:0.15, T:0.28
Consensus pattern (43 bp):
TACAATGCCAATGTCCCAGACATGGTCTTACATGTAATCACAA
Found at i:65976647 original size:446 final size:446
Alignment explanation
Indices: 65975813--65976701 Score: 1415
Period size: 446 Copynumber: 2.0 Consensus size: 446
65975803 GTACTCCATG
*
65975813 TAATCTCAAAACCTCGGAGATATACAACTCAGCTAACTATTCAAGCAAATAGTCCATTCGTACTA
1 TAATCTCAAAACCTCGGAGATATACAACTCAGCTAACTATTCAAGCAAATAGTCCATTCGTACCA
* * * *
65975878 GAACGAAACGAGATATTTTTTCAATCTGTCAACTATAACCTAGATTGCATCTTTCTTTTTTAGAG
66 GAACGAAACGAGATATTTTGTCAATCTATCAACTATAACCCAGATCGCATCTTTCTTTTTTAGAG
* * *
65975943 ATATGGGCAATCCTGACACAAAATCCATAGTCACTCTACCCCATTTTCACTCGGGAATCATGATA
131 ATAGGGGCAATCCTGACACAAAATCCATAGTCACTCAACCCCATTTCCACTCGGGAATCATGATA
*
65976008 GGCTGTAATAAACTTGAAGGTACTTGATGCTCAGCTTTAACTTGTTGACAAATCAAACATTTCGA
196 GGCTGTAATAAACTTGAAGGTACTTGATGC-CAGCTTTAACTTGCTGACAAATCAAACATTTCGA
*
65976073 AACAAATTCTGAAATATCACGTTTCATGCCATGTCACCAATAAAGCTGTTTCAAATAATTATACA
260 AACAAATTCTGAAATATCACGTTTCATGCCATGCCACCAATAAAGCTGTTTCAAATAATTATACA
* * * * * *
65976138 TTTTCGTGTTTCCCGGATGTACTGATAAACGACTACTACGTGCTTCATTCAAAATCATCTGAATT
325 TTCTCATGTTCCCCAGATGTACAGATAAACGACTACTACGTGCTTCATTCAAAATCATCTGAATC
* *
65976203 AACTCTGCATTTCTT-GAAACACATATTCGGCCTCGGAATCTTAAATAGTCATCCGTA
390 AACTCTGCATTT-TTCGAAACACATATTCGGCCTCAGAATCTTAAACAGTCATCCGTA
* * * * **
65976260 TAATCTCAAAACCTCGTAGATATACAACTTAGCTAACTTTTCAAGCGAATAGTCTGTTCGTACCA
1 TAATCTCAAAACCTCGGAGATATACAACTCAGCTAACTATTCAAGCAAATAGTCCATTCGTACCA
* * *
65976325 GAACGAAATGAGCTAATTTTGTCAATCTATCAACTATAACCCAGATCGCATCTTTCTTTTTTGGA
66 GAACGAAACGAGAT-ATTTTGTCAATCTATCAACTATAACCCAGATCGCATCTTTCTTTTTTAGA
* *
65976390 GATAGGGGCAAT-GTCGACACAAAATCCATAGTCACTCAACCCCATTTCCACTTGGGAATCATGA
130 GATAGGGGCAATCCT-GACACAAAATCCATAGTCACTCAACCCCATTTCCACTCGGGAATCATGA
65976454 TAGGCTGTAATAAACTTGAAGGTACTTGATG-CAGCTTTAACTTGCTGACAAATCAAACATTTCG
194 TAGGCTGTAATAAACTTGAAGGTACTTGATGCCAGCTTTAACTTGCTGACAAATCAAACATTTCG
*
65976518 AAACAAATTCTGAAATATCATGTTTCATGCCATGCCACCAATAAAGCTGTTTCAAATAATTATAC
259 AAACAAATTCTGAAATATCACGTTTCATGCCATGCCACCAATAAAGCTGTTTCAAATAATTATAC
* *
65976583 ATTCTCATGTTCCCCAGATGTACAGATAAACGACTACTATGTGCTTTATTCAAAATCATCTGAAT
324 ATTCTCATGTTCCCCAGATGTACAGATAAACGACTACTACGTGCTTCATTCAAAATCATCTGAAT
* *
65976648 CAATTCTGCATTTTTCGGAACACATATTCGGCCTCAGAATCTTAAACAGTCATC
389 CAACTCTGCATTTTTCGAAACACATATTCGGCCTCAGAATCTTAAACAGTCATC
65976702 GGAATCAACT
Statistics
Matches: 405, Mismatches: 34, Indels: 7
0.91 0.08 0.02
Matches are distributed among these distances:
445 2 0.00
446 199 0.49
447 71 0.18
448 133 0.33
ACGTcount: A:0.33, C:0.22, G:0.14, T:0.31
Consensus pattern (446 bp):
TAATCTCAAAACCTCGGAGATATACAACTCAGCTAACTATTCAAGCAAATAGTCCATTCGTACCA
GAACGAAACGAGATATTTTGTCAATCTATCAACTATAACCCAGATCGCATCTTTCTTTTTTAGAG
ATAGGGGCAATCCTGACACAAAATCCATAGTCACTCAACCCCATTTCCACTCGGGAATCATGATA
GGCTGTAATAAACTTGAAGGTACTTGATGCCAGCTTTAACTTGCTGACAAATCAAACATTTCGAA
ACAAATTCTGAAATATCACGTTTCATGCCATGCCACCAATAAAGCTGTTTCAAATAATTATACAT
TCTCATGTTCCCCAGATGTACAGATAAACGACTACTACGTGCTTCATTCAAAATCATCTGAATCA
ACTCTGCATTTTTCGAAACACATATTCGGCCTCAGAATCTTAAACAGTCATCCGTA
Found at i:65986089 original size:31 final size:30
Alignment explanation
Indices: 65986037--65986095 Score: 73
Period size: 31 Copynumber: 1.9 Consensus size: 30
65986027 GAAAAGTTTA
* **
65986037 AATTTTTTAAAATAACTTTTTGATTTTTTC
1 AATTTTTCAAAATAAAGTTTTGATTTTTTC
*
65986067 AATTATTTCAAAATAAAGTTTTGGTTTTT
1 AATT-TTTCAAAATAAAGTTTTGATTTTT
65986096 AAGAAAAGTA
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
30 4 0.17
31 20 0.83
ACGTcount: A:0.32, C:0.05, G:0.07, T:0.56
Consensus pattern (30 bp):
AATTTTTCAAAATAAAGTTTTGATTTTTTC
Found at i:65986746 original size:16 final size:16
Alignment explanation
Indices: 65986714--65986748 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
65986704 TTATTTCGTC
65986714 TTTATTTATTTTCATG
1 TTTATTTATTTTCATG
65986730 TTTATTTATATTT-ATG
1 TTTATTTAT-TTTCATG
65986746 TTT
1 TTT
65986749 TTTTGCACAT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 15 0.83
17 3 0.17
ACGTcount: A:0.20, C:0.03, G:0.06, T:0.71
Consensus pattern (16 bp):
TTTATTTATTTTCATG
Found at i:65993770 original size:46 final size:46
Alignment explanation
Indices: 65993630--65993770 Score: 128
Period size: 46 Copynumber: 3.0 Consensus size: 46
65993620 GCCCATAAGC
* * *
65993630 GAACTTGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCT--C
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCCTA--TACATC-CTAGT
* * * *
65993677 GAACTCGGACTCAACTTAACGAGTTCGGA--CATTTGCATCCATAAGT
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCCTATACATCC-T-AGT
* *
65993723 GAACTCGGACTCAACTCAACGAGTTCGGATGCCCAAACATCCTAGT
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCCTATACATCCTAGT
65993769 GA
1 GA
65993771 CATGTCACTT
Statistics
Matches: 75, Mismatches: 13, Indels: 13
0.74 0.13 0.13
Matches are distributed among these distances:
42 1 0.01
43 6 0.08
45 2 0.03
46 33 0.44
47 27 0.36
48 6 0.08
ACGTcount: A:0.29, C:0.28, G:0.20, T:0.23
Consensus pattern (46 bp):
GAACTCGGACTCAACTCAACGAGTTCGGATGCCTATACATCCTAGT
Found at i:65999183 original size:45 final size:45
Alignment explanation
Indices: 65999115--65999201 Score: 156
Period size: 45 Copynumber: 1.9 Consensus size: 45
65999105 AATTTAAAGC
65999115 AAGGTTGGTAGCCAAAGGGTTTACACAAAAACAATGTATTGAAGT
1 AAGGTTGGTAGCCAAAGGGTTTACACAAAAACAATGTATTGAAGT
* *
65999160 AAGGTTGGTAGCCAAAGGTTTTACACAAAAATAATGTATTGA
1 AAGGTTGGTAGCCAAAGGGTTTACACAAAAACAATGTATTGA
65999202 TTACTTTGAT
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
45 40 1.00
ACGTcount: A:0.40, C:0.10, G:0.23, T:0.26
Consensus pattern (45 bp):
AAGGTTGGTAGCCAAAGGGTTTACACAAAAACAATGTATTGAAGT
Found at i:66009187 original size:3 final size:3
Alignment explanation
Indices: 66009179--66009218 Score: 73
Period size: 3 Copynumber: 13.7 Consensus size: 3
66009169 ATAAGCTGCA
66009179 AAT AAT AAT AAT AAT AAT AAT -AT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
66009219 ACATCATGTA
Statistics
Matches: 36, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
2 2 0.06
3 34 0.94
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:66009203 original size:17 final size:17
Alignment explanation
Indices: 66009183--66009217 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
66009173 GCTGCAAATA
66009183 ATAATAATAATAATAAT
1 ATAATAATAATAATAAT
66009200 ATAATAATAATAATAAT
1 ATAATAATAATAATAAT
66009217 A
1 A
66009218 AACATCATGT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (17 bp):
ATAATAATAATAATAAT
Found at i:66009203 original size:20 final size:20
Alignment explanation
Indices: 66009180--66009218 Score: 78
Period size: 20 Copynumber: 1.9 Consensus size: 20
66009170 TAAGCTGCAA
66009180 ATAATAATAATAATAATAAT
1 ATAATAATAATAATAATAAT
66009200 ATAATAATAATAATAATAA
1 ATAATAATAATAATAATAA
66009219 ACATCATGTA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (20 bp):
ATAATAATAATAATAATAAT
Found at i:66014762 original size:19 final size:19
Alignment explanation
Indices: 66014713--66014762 Score: 57
Period size: 19 Copynumber: 2.6 Consensus size: 19
66014703 TAAAGTGTGC
* *
66014713 ATAATAAAAAATAAAATGT
1 ATAAAAAAAAATAAAATGA
*
66014732 ATAAAAACAAATAAAAT-A
1 ATAAAAAAAAATAAAATGA
66014750 ATAAAATAAAAAT
1 ATAAAA-AAAAAT
66014763 TTTATTAATG
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
18 6 0.23
19 20 0.77
ACGTcount: A:0.74, C:0.02, G:0.02, T:0.22
Consensus pattern (19 bp):
ATAAAAAAAAATAAAATGA
Found at i:66052305 original size:17 final size:18
Alignment explanation
Indices: 66052283--66052317 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
66052273 ATTGGTCCTA
66052283 AAAAT-AGTATCGATACT
1 AAAATAAGTATCGATACT
*
66052300 AAAATAAGTATTGATACT
1 AAAATAAGTATCGATACT
66052318 TTGTAACATA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.49, C:0.09, G:0.11, T:0.31
Consensus pattern (18 bp):
AAAATAAGTATCGATACT
Found at i:66052880 original size:29 final size:30
Alignment explanation
Indices: 66052837--66052906 Score: 88
Period size: 31 Copynumber: 2.3 Consensus size: 30
66052827 GGTGTTATAT
* *
66052837 TTCATGTGTATAATTG-CACCAAATTAAAG
1 TTCATGTATAGAATTGACACCAAATTAAAG
**
66052866 TTCATGTATAGAATTGTACATTAAATTAAAG
1 TTCATGTATAGAATTG-ACACCAAATTAAAG
66052897 TTCATGTATA
1 TTCATGTATA
66052907 ATTTTAATAT
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
29 14 0.40
31 21 0.60
ACGTcount: A:0.39, C:0.10, G:0.13, T:0.39
Consensus pattern (30 bp):
TTCATGTATAGAATTGACACCAAATTAAAG
Found at i:66065617 original size:5 final size:5
Alignment explanation
Indices: 66065607--66065636 Score: 60
Period size: 5 Copynumber: 6.0 Consensus size: 5
66065597 GTCCTTTCGT
66065607 AATTA AATTA AATTA AATTA AATTA AATTA
1 AATTA AATTA AATTA AATTA AATTA AATTA
66065637 TTCAAGGGTA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 25 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (5 bp):
AATTA
Found at i:66068403 original size:22 final size:22
Alignment explanation
Indices: 66068376--66068423 Score: 71
Period size: 22 Copynumber: 2.2 Consensus size: 22
66068366 ATAATAAATT
66068376 TTTATATATTTTTAT-ATTAATA
1 TTTATATATTTTTATAATTAA-A
*
66068398 TTTATATGTTTTTATAATTAAA
1 TTTATATATTTTTATAATTAAA
66068420 TTTA
1 TTTA
66068424 AATTAATAAA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
22 19 0.79
23 5 0.21
ACGTcount: A:0.35, C:0.00, G:0.02, T:0.62
Consensus pattern (22 bp):
TTTATATATTTTTATAATTAAA
Found at i:66069561 original size:20 final size:20
Alignment explanation
Indices: 66069536--66069573 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
66069526 CCTTACATCG
66069536 TTACATAATTGAAACTTTCA
1 TTACATAATTGAAACTTTCA
*
66069556 TTACATAGTTGAAACTTT
1 TTACATAATTGAAACTTT
66069574 TCAGAGAATA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.37, C:0.13, G:0.08, T:0.42
Consensus pattern (20 bp):
TTACATAATTGAAACTTTCA
Found at i:66069643 original size:23 final size:23
Alignment explanation
Indices: 66069612--66069692 Score: 119
Period size: 23 Copynumber: 3.5 Consensus size: 23
66069602 ATACAAACCA
* *
66069612 CAGAGAATATTCACTATTCATGC
1 CAGAGAATATTTACTATTCACGC
*
66069635 CAGAAAATATTTACTATTCACGC
1 CAGAGAATATTTACTATTCACGC
66069658 CAGAGAATATTTA-TGATTCACGC
1 CAGAGAATATTTACT-ATTCACGC
66069681 CAGAGAATATTT
1 CAGAGAATATTT
66069693 CTTGTTCACT
Statistics
Matches: 53, Mismatches: 4, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
22 1 0.02
23 52 0.98
ACGTcount: A:0.37, C:0.19, G:0.14, T:0.31
Consensus pattern (23 bp):
CAGAGAATATTTACTATTCACGC
Found at i:66072505 original size:21 final size:21
Alignment explanation
Indices: 66072479--66072526 Score: 87
Period size: 21 Copynumber: 2.3 Consensus size: 21
66072469 TCAACTTAGA
66072479 GCGGAGGCAACAGCGAGGGAG
1 GCGGAGGCAACAGCGAGGGAG
*
66072500 GCGGAGGCAGCAGCGAGGGAG
1 GCGGAGGCAACAGCGAGGGAG
66072521 GCGGAG
1 GCGGAG
66072527 CAGAACAGGA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.25, C:0.19, G:0.56, T:0.00
Consensus pattern (21 bp):
GCGGAGGCAACAGCGAGGGAG
Found at i:66072875 original size:43 final size:43
Alignment explanation
Indices: 66072828--66073155 Score: 360
Period size: 43 Copynumber: 7.5 Consensus size: 43
66072818 GCAAATCAGT
66072828 GGCGTTTTTTAAAAAAGCGCCGCTAAAAGTACAGGTCTATAGC
1 GGCGTTTTTTAAAAAAGCGCCGCTAAAAGTACAGGTCTATAGC
* * * *
66072871 GGCGTTTTTTATAAAAGCGCCG-TTAAAGTTCTTGGTCTATAGC
1 GGCGTTTTTTAAAAAAGCGCCGCTAAAAGTAC-AGGTCTATAGC
*
66072914 GGCGTTTTTTTACAAAAGCGGCCGCTAAAAGTACAGGTCTATAGC
1 GGCG-TTTTTTAAAAAAGC-GCCGCTAAAAGTACAGGTCTATAGC
* * * *
66072959 GGTGTTTTTTTTTACAAAAGTGCCACT-AAAGTACAGGTCTATAGC
1 GGCG---TTTTTTAAAAAAGCGCCGCTAAAAGTACAGGTCTATAGC
*
66073004 GGCGTTTTTTATAAAAGCGCCGCTAAAAGTACAGGTCTATAGC
1 GGCGTTTTTTAAAAAAGCGCCGCTAAAAGTACAGGTCTATAGC
* * * * *
66073047 GGCGTTTTCTATAAAAGCGCCGCT-AAAGTTCTTGGTCTATAAC
1 GGCGTTTTTTAAAAAAGCGCCGCTAAAAGTAC-AGGTCTATAGC
* * * *
66073090 GGCGTTTTTATAAAAAA-CGCCGCTAAAGGTCCTGGTCTTTAGC
1 GGCGTTTTT-TAAAAAAGCGCCGCTAAAAGTACAGGTCTATAGC
*
66073133 GGCGCTTTTATAAAAAA-CGCCGC
1 GGCG-TTTTTTAAAAAAGCGCCGC
66073156 GAACTTTTGT
Statistics
Matches: 248, Mismatches: 26, Indels: 22
0.84 0.09 0.07
Matches are distributed among these distances:
42 30 0.12
43 126 0.51
44 28 0.11
45 38 0.15
46 12 0.05
47 14 0.06
ACGTcount: A:0.28, C:0.19, G:0.23, T:0.30
Consensus pattern (43 bp):
GGCGTTTTTTAAAAAAGCGCCGCTAAAAGTACAGGTCTATAGC
Done.