Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr9
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 91122320
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2661692 characters in sequence are not A, C, G, or T
File 205 of 279
Found at i:66993055 original size:16 final size:16
Alignment explanation
Indices: 66993036--66993067 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
66993026 GTGGATTATC
66993036 AGGATTCTTATTCTAT
1 AGGATTCTTATTCTAT
66993052 AGGATTCTTATTCTAT
1 AGGATTCTTATTCTAT
66993068 TTCTTAATAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.25, C:0.12, G:0.12, T:0.50
Consensus pattern (16 bp):
AGGATTCTTATTCTAT
Found at i:66994741 original size:16 final size:15
Alignment explanation
Indices: 66994715--66994744 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
66994705 ATCATGCATG
66994715 TGTATATATATAATA
1 TGTATATATATAATA
66994730 TGTATGATATATAAT
1 TGTAT-ATATATAAT
66994745 GTTGAATATC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.43, C:0.00, G:0.10, T:0.47
Consensus pattern (15 bp):
TGTATATATATAATA
Found at i:67024389 original size:374 final size:375
Alignment explanation
Indices: 67023700--67024445 Score: 1368
Period size: 374 Copynumber: 2.0 Consensus size: 375
67023690 GCCAAATTAC
67023700 AACAGATCAAGGGACAAGCCTGCACTGATAAAGGTTGGGTGTGGACCCTCAGCAATACCAATGCT
1 AACAGATCAAGGGACAAGCCTGCACTGATAAAGGTTGGGTGTGGACCCTCAGCAATACCAATGCT
* *
67023765 AACTTGTTTTAACTCATTAATAGTGGCTTGATTTCCTTCTTCAAATGATGAAGAAGCTTATTAGG
66 AACTTGTTTCAACTCATTAATAGTGGCTTGATTTCCTTCTTCAAATGACGAAGAAGCTTATTAGG
67023830 CTTTCTCTTCTCGAGACTCTTCATTGATCTCTTTAACAAATAGACAATAAGATGTAAGGGCTTCA
131 CTTTCTCTTCTCGAGACTCTTCATTGATCTCTTTAACAAATAGACAATAAGATGTAAGGGCTTCA
67023895 TATTTTAACACTCTTCCTTCATGGATGTATTAGTTATGACTACCATGTATTATTTGGATTTTAAG
196 TATTTTAACACTCTTCCTTCATGGATGTATTAGTTATGACTACCATGTATTATTTGGATTTTAAG
* *
67023960 ACTTCACCAGTAGTTATCTTCAATTAGGACTGCCTTTTCATCCACGAGCTAATTTCATTGTGAAA
261 ACTTCACCAGTAGTTATCTTCAATTAGGACTGCCTTTTCATCCACGAGCTAATTTCACTATGAAA
* *
67024025 ATGCGTTAATATTTTTTGAGCAGGAGC-TTTTTTTCCCTAATGCGACTAT
326 ATGCGTTAATATTTTTCGAGCAGGAGCTTTTTTTTCCCTAATACGACTAT
*
67024074 AACAGATCAAGGGACAAGCCTGCACTGATAAAGGTTGGGTGTGGATCCTCAGCAATACCAATGCT
1 AACAGATCAAGGGACAAGCCTGCACTGATAAAGGTTGGGTGTGGACCCTCAGCAATACCAATGCT
*
67024139 AACTTGTTTCAACTCATTAATAGTGGCTTGATTTCCTTCTTCAAATGACGAAGAAGCTTATTGGG
66 AACTTGTTTCAACTCATTAATAGTGGCTTGATTTCCTTCTTCAAATGACGAAGAAGCTTATTAGG
*
67024204 CTTTCTCTTCTCGAGACTCTTCATTGATCTCTTTAACAGATAGACAATAAGATGTAAGGGCTTCA
131 CTTTCTCTTCTCGAGACTCTTCATTGATCTCTTTAACAAATAGACAATAAGATGTAAGGGCTTCA
*
67024269 TATTTTAACACTCTTCCTTCATGGATGTATTAGTTATGACTACCATGTATTATTTGGCTTTTAAG
196 TATTTTAACACTCTTCCTTCATGGATGTATTAGTTATGACTACCATGTATTATTTGGATTTTAAG
* *
67024334 ACTTCACCAGTAGTTATCTTCAATTAGGACTGCCTTTTCATCCACGAGGTAATTTCGCTATGAAA
261 ACTTCACCAGTAGTTATCTTCAATTAGGACTGCCTTTTCATCCACGAGCTAATTTCACTATGAAA
*
67024399 ATGCGTTAATATTTTTCGAGCGGGAGCTTTTTTTTCCCTAATACGAC
326 ATGCGTTAATATTTTTCGAGCAGGAGCTTTTTTTTCCCTAATACGAC
67024446 CAACCTTTCC
Statistics
Matches: 358, Mismatches: 13, Indels: 1
0.96 0.03 0.00
Matches are distributed among these distances:
374 340 0.95
375 18 0.05
ACGTcount: A:0.28, C:0.19, G:0.18, T:0.36
Consensus pattern (375 bp):
AACAGATCAAGGGACAAGCCTGCACTGATAAAGGTTGGGTGTGGACCCTCAGCAATACCAATGCT
AACTTGTTTCAACTCATTAATAGTGGCTTGATTTCCTTCTTCAAATGACGAAGAAGCTTATTAGG
CTTTCTCTTCTCGAGACTCTTCATTGATCTCTTTAACAAATAGACAATAAGATGTAAGGGCTTCA
TATTTTAACACTCTTCCTTCATGGATGTATTAGTTATGACTACCATGTATTATTTGGATTTTAAG
ACTTCACCAGTAGTTATCTTCAATTAGGACTGCCTTTTCATCCACGAGCTAATTTCACTATGAAA
ATGCGTTAATATTTTTCGAGCAGGAGCTTTTTTTTCCCTAATACGACTAT
Found at i:67027127 original size:12 final size:12
Alignment explanation
Indices: 67027110--67027134 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
67027100 TGATGATCTT
67027110 TGGCTACTTGTA
1 TGGCTACTTGTA
67027122 TGGCTACTTGTA
1 TGGCTACTTGTA
67027134 T
1 T
67027135 ATTGGATTGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.16, C:0.16, G:0.24, T:0.44
Consensus pattern (12 bp):
TGGCTACTTGTA
Found at i:67031103 original size:20 final size:20
Alignment explanation
Indices: 67031080--67031143 Score: 56
Period size: 20 Copynumber: 3.2 Consensus size: 20
67031070 TTGACTAAAT
67031080 TACTGGTAGTTTATCTGCAA
1 TACTGGTAGTTTATCTGCAA
* ** * *
67031100 TACTGGCAGCCTGTCTGCAC
1 TACTGGTAGTTTATCTGCAA
* * *
67031120 TAGTGGTAGTTTATTTGCAT
1 TACTGGTAGTTTATCTGCAA
67031140 TACT
1 TACT
67031144 AGTTACTTGA
Statistics
Matches: 31, Mismatches: 13, Indels: 0
0.70 0.30 0.00
Matches are distributed among these distances:
20 31 1.00
ACGTcount: A:0.20, C:0.19, G:0.22, T:0.39
Consensus pattern (20 bp):
TACTGGTAGTTTATCTGCAA
Found at i:67034389 original size:4 final size:4
Alignment explanation
Indices: 67034382--67034411 Score: 60
Period size: 4 Copynumber: 7.5 Consensus size: 4
67034372 GTTAGGAACT
67034382 TTTA TTTA TTTA TTTA TTTA TTTA TTTA TT
1 TTTA TTTA TTTA TTTA TTTA TTTA TTTA TT
67034412 CTTATTGAAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 26 1.00
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (4 bp):
TTTA
Found at i:67037362 original size:24 final size:25
Alignment explanation
Indices: 67037315--67037362 Score: 73
Period size: 24 Copynumber: 2.0 Consensus size: 25
67037305 TAACCTTAGA
67037315 ATCAAAACTCTCCGTTTTACTTAAG
1 ATCAAAACTCTCCGTTTTACTTAAG
67037340 ATCAAAACTC-CC-TGTTTACTTAA
1 ATCAAAACTCTCCGT-TTTACTTAA
67037363 ATGAGGTTAG
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
23 1 0.05
24 11 0.50
25 10 0.45
ACGTcount: A:0.33, C:0.25, G:0.06, T:0.35
Consensus pattern (25 bp):
ATCAAAACTCTCCGTTTTACTTAAG
Found at i:67038573 original size:79 final size:79
Alignment explanation
Indices: 67038442--67038599 Score: 255
Period size: 79 Copynumber: 2.0 Consensus size: 79
67038432 ACTAAAATAA
*
67038442 AGTTTGTCATGTTTGAATTAGGCAACCCTTCAATGAAATCCAAGCTAACAACTGACCAAGCTCTG
1 AGTTTGTCATGTTTGAATTAGGCAACCCTTCAATGAAATCCAAGCTAACAACTAACCAAGCTCTG
67038507 CCAGGCATCGGTAG
66 CCAGGCATCGGTAG
* *
67038521 AGTTTTTCTTGTTTGAATT-GAGCAACCCTTCAATGAAATCCAAGCTAACAACTAACCAAGCTCT
1 AGTTTGTCATGTTTGAATTAG-GCAACCCTTCAATGAAATCCAAGCTAACAACTAACCAAGCTCT
* *
67038585 GTCAGGTATCGGTAG
65 GCCAGGCATCGGTAG
67038600 TGGCTGAAGG
Statistics
Matches: 73, Mismatches: 5, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
78 1 0.01
79 72 0.99
ACGTcount: A:0.30, C:0.23, G:0.19, T:0.28
Consensus pattern (79 bp):
AGTTTGTCATGTTTGAATTAGGCAACCCTTCAATGAAATCCAAGCTAACAACTAACCAAGCTCTG
CCAGGCATCGGTAG
Found at i:67041806 original size:15 final size:16
Alignment explanation
Indices: 67041781--67041810 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
67041771 CGTGACCCCG
67041781 TTAGCTGGAGGTCCAC
1 TTAGCTGGAGGTCCAC
67041797 TTAG-TGGAGGTCCA
1 TTAGCTGGAGGTCCA
67041811 AAATACTAGC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 10 0.71
16 4 0.29
ACGTcount: A:0.20, C:0.20, G:0.33, T:0.27
Consensus pattern (16 bp):
TTAGCTGGAGGTCCAC
Found at i:67042289 original size:26 final size:26
Alignment explanation
Indices: 67042260--67042311 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
67042250 CCCGTTTACT
67042260 TAAATGAGGTTAACTGTTTATAACTA
1 TAAATGAGGTTAACTGTTTATAACTA
67042286 TAAATGAGGTTAACTGTTTATAACTA
1 TAAATGAGGTTAACTGTTTATAACTA
67042312 ACTTCTTTTC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.38, C:0.08, G:0.15, T:0.38
Consensus pattern (26 bp):
TAAATGAGGTTAACTGTTTATAACTA
Found at i:67048424 original size:33 final size:33
Alignment explanation
Indices: 67048368--67048442 Score: 93
Period size: 35 Copynumber: 2.3 Consensus size: 33
67048358 CCCTTTACAT
67048368 CCAAAAAT-TTTTACTTTCCCTCCCCCTTTTAACTC
1 CCAAAAATCTTTTACTTT-CCTCCCCC-TTTAAC-C
67048403 CCAAAAATCTTTTA-TTT-CTCCCCCTTTAACC
1 CCAAAAATCTTTTACTTTCCTCCCCCTTTAACC
*
67048434 CTAAAAATC
1 CCAAAAATC
67048443 AAAATCCTCT
Statistics
Matches: 38, Mismatches: 1, Indels: 6
0.84 0.02 0.13
Matches are distributed among these distances:
31 9 0.24
32 6 0.16
33 7 0.18
35 11 0.29
36 5 0.13
ACGTcount: A:0.28, C:0.35, G:0.00, T:0.37
Consensus pattern (33 bp):
CCAAAAATCTTTTACTTTCCTCCCCCTTTAACC
Found at i:67061468 original size:69 final size:69
Alignment explanation
Indices: 67061382--67061517 Score: 200
Period size: 69 Copynumber: 2.0 Consensus size: 69
67061372 CTGTTGTAAC
* * * **
67061382 TTTTTGATGCTGTAAAATTTAACATATAGATTATGATATATAAGCTAATGAGATAATGCAACTTT
1 TTTTTGATGCTATAAAATTTAACATATAGATAATGACATATAAGCTAACAAGATAATGCAACTTT
67061447 TTAT
66 TTAT
* * *
67061451 TTTTTGATGCTATAAAATTTAACATATAGATAATGGCATATAAGCTAACAAGATCATGTAACTTT
1 TTTTTGATGCTATAAAATTTAACATATAGATAATGACATATAAGCTAACAAGATAATGCAACTTT
67061516 TT
66 TT
67061518 GTTTATGTAT
Statistics
Matches: 59, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
69 59 1.00
ACGTcount: A:0.38, C:0.09, G:0.12, T:0.40
Consensus pattern (69 bp):
TTTTTGATGCTATAAAATTTAACATATAGATAATGACATATAAGCTAACAAGATAATGCAACTTT
TTAT
Found at i:67062010 original size:16 final size:16
Alignment explanation
Indices: 67061973--67062018 Score: 56
Period size: 16 Copynumber: 2.9 Consensus size: 16
67061963 TAAATTATTG
**
67061973 ATTACAACTCTATTTT
1 ATTACAACTCTATTCC
*
67061989 AGTACAACTCTATTCC
1 ATTACAACTCTATTCC
*
67062005 ATTACATCTCTATT
1 ATTACAACTCTATT
67062019 TCAATATAGC
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
16 25 1.00
ACGTcount: A:0.30, C:0.24, G:0.02, T:0.43
Consensus pattern (16 bp):
ATTACAACTCTATTCC
Found at i:67064022 original size:18 final size:17
Alignment explanation
Indices: 67063989--67064027 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 17
67063979 TTGTATAAAT
67063989 TGTGAATTATATTTGATA
1 TGTGAATTATATTTGA-A
67064007 TGTGAATTA-ATATTGAA
1 TGTGAATTATAT-TTGAA
67064024 TGTG
1 TGTG
67064028 GAAGGAAAGT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
17 7 0.35
18 13 0.65
ACGTcount: A:0.33, C:0.00, G:0.21, T:0.46
Consensus pattern (17 bp):
TGTGAATTATATTTGAA
Found at i:67064122 original size:75 final size:75
Alignment explanation
Indices: 67064032--67064254 Score: 446
Period size: 75 Copynumber: 3.0 Consensus size: 75
67064022 AATGTGGAAG
67064032 GAAAGTTGTTCATGAATTATTCAAGTGATAAAGTGTTGAAAATAAAGTGTTAAGTGTAAATTCCC
1 GAAAGTTGTTCATGAATTATTCAAGTGATAAAGTGTTGAAAATAAAGTGTTAAGTGTAAATTCCC
67064097 GGTTGAACAT
66 GGTTGAACAT
67064107 GAAAGTTGTTCATGAATTATTCAAGTGATAAAGTGTTGAAAATAAAGTGTTAAGTGTAAATTCCC
1 GAAAGTTGTTCATGAATTATTCAAGTGATAAAGTGTTGAAAATAAAGTGTTAAGTGTAAATTCCC
67064172 GGTTGAACAT
66 GGTTGAACAT
67064182 GAAAGTTGTTCATGAATTATTCAAGTGATAAAGTGTTGAAAATAAAGTGTTAAGTGTAAATTCCC
1 GAAAGTTGTTCATGAATTATTCAAGTGATAAAGTGTTGAAAATAAAGTGTTAAGTGTAAATTCCC
67064247 GGTTGAAC
66 GGTTGAAC
67064255 TTAGGAATAG
Statistics
Matches: 148, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
75 148 1.00
ACGTcount: A:0.37, C:0.08, G:0.22, T:0.33
Consensus pattern (75 bp):
GAAAGTTGTTCATGAATTATTCAAGTGATAAAGTGTTGAAAATAAAGTGTTAAGTGTAAATTCCC
GGTTGAACAT
Found at i:67064430 original size:23 final size:23
Alignment explanation
Indices: 67064403--67064500 Score: 162
Period size: 23 Copynumber: 4.3 Consensus size: 23
67064393 AGTGTTATTG
67064403 ATCAGTGGTAGCTTCGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
* *
67064426 TTCAGTGGTAGCTTTGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
*
67064449 -CCAGTGGTAGCTTCGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
67064471 ATCAGTGGTAGCTTCGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
67064494 ATCAGTG
1 ATCAGTG
67064501 TGGCACTTAT
Statistics
Matches: 69, Mismatches: 5, Indels: 2
0.91 0.07 0.03
Matches are distributed among these distances:
22 20 0.29
23 49 0.71
ACGTcount: A:0.20, C:0.21, G:0.27, T:0.32
Consensus pattern (23 bp):
ATCAGTGGTAGCTTCGGCTACAT
Found at i:67064469 original size:45 final size:45
Alignment explanation
Indices: 67064405--67064493 Score: 160
Period size: 45 Copynumber: 2.0 Consensus size: 45
67064395 TGTTATTGAT
* *
67064405 CAGTGGTAGCTTCGGCTACATTTCAGTGGTAGCTTTGGCTACATC
1 CAGTGGTAGCTTCGGCTACATATCAGTGGTAGCTTCGGCTACATC
67064450 CAGTGGTAGCTTCGGCTACATATCAGTGGTAGCTTCGGCTACAT
1 CAGTGGTAGCTTCGGCTACATATCAGTGGTAGCTTCGGCTACAT
67064494 ATCAGTGTGG
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
45 42 1.00
ACGTcount: A:0.19, C:0.22, G:0.27, T:0.31
Consensus pattern (45 bp):
CAGTGGTAGCTTCGGCTACATATCAGTGGTAGCTTCGGCTACATC
Found at i:67069278 original size:16 final size:16
Alignment explanation
Indices: 67069255--67069302 Score: 60
Period size: 18 Copynumber: 2.9 Consensus size: 16
67069245 TTATATTAAA
67069255 TTTCTTATATATATTC
1 TTTCTTATATATATTC
* *
67069271 TTTTTTATATATTACTTG
1 TTTCTTATATA-TA-TTC
67069289 TTTCTTATATATAT
1 TTTCTTATATATAT
67069303 ATATTCATAT
Statistics
Matches: 27, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
16 11 0.41
17 4 0.15
18 12 0.44
ACGTcount: A:0.25, C:0.08, G:0.02, T:0.65
Consensus pattern (16 bp):
TTTCTTATATATATTC
Found at i:67069325 original size:16 final size:15
Alignment explanation
Indices: 67069263--67069339 Score: 54
Period size: 16 Copynumber: 5.1 Consensus size: 15
67069253 AATTTCTTAT
*
67069263 ATATATT-CTTTTTT
1 ATATATTACTTTTTC
67069277 ATATATTACTTGTTTC
1 ATATATTACTT-TTTC
* *
67069293 TTATATATA-TATATTC
1 ATATAT-TACT-TTTTC
67069309 ATATATTACTTGTTTC
1 ATATATTACTT-TTTC
*
67069325 AAAT-TTA-TTTTTC
1 ATATATTACTTTTTC
67069338 AT
1 AT
67069340 TTGTTATTAT
Statistics
Matches: 50, Mismatches: 7, Indels: 13
0.71 0.10 0.19
Matches are distributed among these distances:
13 5 0.10
14 9 0.18
15 9 0.18
16 24 0.48
17 3 0.06
ACGTcount: A:0.29, C:0.09, G:0.03, T:0.60
Consensus pattern (15 bp):
ATATATTACTTTTTC
Found at i:67069514 original size:27 final size:26
Alignment explanation
Indices: 67069463--67069514 Score: 61
Period size: 26 Copynumber: 2.0 Consensus size: 26
67069453 TCATACTATT
* *
67069463 TATTTTAAATTGCTTTTTGTAATATC
1 TATTTTAAAGTGCTTTTTATAATATC
67069489 TATTTTAAACGTG-TTTTTATATATAT
1 TATTTTAAA-GTGCTTTTTATA-ATAT
67069515 TACTCATCTA
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
26 16 0.73
27 6 0.27
ACGTcount: A:0.29, C:0.06, G:0.08, T:0.58
Consensus pattern (26 bp):
TATTTTAAAGTGCTTTTTATAATATC
Found at i:67069579 original size:26 final size:26
Alignment explanation
Indices: 67069550--67069659 Score: 80
Period size: 26 Copynumber: 4.3 Consensus size: 26
67069540 TCATTTTTTT
* *
67069550 TATTTTTTATTTTAATTTGCTTTGTA
1 TATTATTTATTTTAATTTGCTTTATA
* * *
67069576 TATTATTTGTTTTAAATTGTTTTATA
1 TATTATTTATTTTAATTTGCTTTATA
* * *
67069602 CATTATTCATTTTAATTTG-TTT-CA
1 TATTATTTATTTTAATTTGCTTTATA
* * * * * *
67069626 TACTAGTTACTTCAAGTTGTTTTATA
1 TATTATTTATTTTAATTTGCTTTATA
67069652 TATTATTT
1 TATTATTT
67069660 TGTTTCATTT
Statistics
Matches: 62, Mismatches: 20, Indels: 4
0.72 0.23 0.05
Matches are distributed among these distances:
24 13 0.21
25 6 0.10
26 43 0.69
ACGTcount: A:0.25, C:0.06, G:0.07, T:0.62
Consensus pattern (26 bp):
TATTATTTATTTTAATTTGCTTTATA
Found at i:67071162 original size:27 final size:27
Alignment explanation
Indices: 67071130--67071184 Score: 74
Period size: 27 Copynumber: 2.0 Consensus size: 27
67071120 CCTCCTCGCC
* *
67071130 TCTTCTGATCAGGTAGTTTTTTTTTCT
1 TCTTCTAATCAGGTAGATTTTTTTTCT
**
67071157 TCTTCTAATCTTGTAGATTTTTTTTCT
1 TCTTCTAATCAGGTAGATTTTTTTTCT
67071184 T
1 T
67071185 TTTTCCCTGA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.13, C:0.15, G:0.11, T:0.62
Consensus pattern (27 bp):
TCTTCTAATCAGGTAGATTTTTTTTCT
Found at i:67072140 original size:27 final size:26
Alignment explanation
Indices: 67072105--67072232 Score: 69
Period size: 27 Copynumber: 4.7 Consensus size: 26
67072095 GTATTGTTGC
*
67072105 AGTGCGTTCAACACCCAGTGGTGTTTT
1 AGTGAGTTCAACA-CCAGTGGTGTTTT
* *
67072132 AGTGAGTTCAA-ATGCCAGTGATGCTTT
1 AGTGAGTTCAACA--CCAGTGGTGTTTT
** **
67072159 AGCCAGTTCGAACACCAGTGGTGTCGT
1 AGTGAGTTC-AACACCAGTGGTGTTTT
* * * **
67072186 AGCGAGTTTGAACAACAGTGGAATTTT
1 AGTGAG-TTCAACACCAGTGGTGTTTT
* *
67072213 AGGGAGTTCAAAAACCAGTG
1 AGTGAGTTC-AACACCAGTG
67072233 TTATCAATGC
Statistics
Matches: 75, Mismatches: 21, Indels: 10
0.71 0.20 0.09
Matches are distributed among these distances:
26 3 0.04
27 67 0.89
28 4 0.05
29 1 0.01
ACGTcount: A:0.27, C:0.18, G:0.27, T:0.27
Consensus pattern (26 bp):
AGTGAGTTCAACACCAGTGGTGTTTT
Found at i:67072391 original size:81 final size:81
Alignment explanation
Indices: 67072240--67072437 Score: 218
Period size: 81 Copynumber: 2.4 Consensus size: 81
67072230 GTGTTATCAA
* * ** * * ***
67072240 TGCTGATAGTGTTACAGCTAGTTTAAATGCTGGTAGTTTTGCTTCAAGTTCTAATGCTTTGGGTG
1 TGCTGATAGTGCTGCAGCTAGTTTAAATGCTGGTAGCATTGCCTCAAGTTCTAAAGCTTCCAGTG
*
67072305 TTGCAATGAGTTCTAC
66 CTGCAATGAGTTCTAC
* * *
67072321 TGCTGGTAGTGCTGCAGCTTGTTTTAATGCTGGTAGCATTGCCTCAAGTTCTAAAGCTTCCAGTG
1 TGCTGATAGTGCTGCAGCTAGTTTAAATGCTGGTAGCATTGCCTCAAGTTCTAAAGCTTCCAGTG
67072386 CTGCAATGAGTTCTAC
66 CTGCAATGAGTTCTAC
* * * * *
67072402 TTCTGTTAGT-CTTGCGGGTAGTTTGAATGCTGGTAG
1 TGCTGATAGTGC-TGCAGCTAGTTTAAATGCTGGTAG
67072438 TGTTGCTGAA
Statistics
Matches: 97, Mismatches: 19, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
80 1 0.01
81 96 0.99
ACGTcount: A:0.19, C:0.16, G:0.26, T:0.38
Consensus pattern (81 bp):
TGCTGATAGTGCTGCAGCTAGTTTAAATGCTGGTAGCATTGCCTCAAGTTCTAAAGCTTCCAGTG
CTGCAATGAGTTCTAC
Found at i:67073968 original size:93 final size:93
Alignment explanation
Indices: 67073809--67074088 Score: 434
Period size: 93 Copynumber: 3.0 Consensus size: 93
67073799 ATTACATGGT
* * * * *
67073809 GGTGTTGCAACTCACGCAGAACATTTTATGCAAGCTAAAGAAACTGAGGCCAGTGTTGAGGCCCA
1 GGTGTTACAACTCATGCAGAACATTTTATGCAAGCTAAAGAAACTGAGCCCAGTGGTGAGGGCCA
*
67073874 GGTTGCTTCTAAAATGATTTCTTCTGCG
66 GGTTGCTTCTAAAATGATTTCTTCTGCA
* *
67073902 GGTGTTACAACTAATGCTGAACATTTTATGCAAGCTAAAGAAACTGAGCCCAGTGGTGAGGGCCA
1 GGTGTTACAACTCATGCAGAACATTTTATGCAAGCTAAAGAAACTGAGCCCAGTGGTGAGGGCCA
*
67073967 GGTTGCTTCTCAAATGATTTCTTCTGCA
66 GGTTGCTTCTAAAATGATTTCTTCTGCA
* * * *
67073995 GATGTTACAACTCATGCCGAGCATTTTATGCAAGCTAAAGAAACTGAGCCCAGTGGTGAGGGCCT
1 GGTGTTACAACTCATGCAGAACATTTTATGCAAGCTAAAGAAACTGAGCCCAGTGGTGAGGGCCA
*
67074060 GGTTGCTTCTGAAATGATTTCTTCTGCA
66 GGTTGCTTCTAAAATGATTTCTTCTGCA
67074088 G
1 G
67074089 ACCATGATGT
Statistics
Matches: 172, Mismatches: 15, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 172 1.00
ACGTcount: A:0.27, C:0.20, G:0.25, T:0.29
Consensus pattern (93 bp):
GGTGTTACAACTCATGCAGAACATTTTATGCAAGCTAAAGAAACTGAGCCCAGTGGTGAGGGCCA
GGTTGCTTCTAAAATGATTTCTTCTGCA
Found at i:67081242 original size:11 final size:11
Alignment explanation
Indices: 67081226--67081251 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
67081216 GTTAAATCAA
67081226 CTTATAATACT
1 CTTATAATACT
67081237 CTTATAATACT
1 CTTATAATACT
67081248 CTTA
1 CTTA
67081252 GCGTGTTCGA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.35, C:0.19, G:0.00, T:0.46
Consensus pattern (11 bp):
CTTATAATACT
Found at i:67091465 original size:21 final size:21
Alignment explanation
Indices: 67091439--67091479 Score: 82
Period size: 21 Copynumber: 2.0 Consensus size: 21
67091429 CGGGTGGATC
67091439 AGCTCTTATGAGCTTCTATTA
1 AGCTCTTATGAGCTTCTATTA
67091460 AGCTCTTATGAGCTTCTATT
1 AGCTCTTATGAGCTTCTATT
67091480 GGCGTGTTTC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.22, C:0.20, G:0.15, T:0.44
Consensus pattern (21 bp):
AGCTCTTATGAGCTTCTATTA
Found at i:67091540 original size:40 final size:40
Alignment explanation
Indices: 67091458--67091557 Score: 123
Period size: 40 Copynumber: 2.5 Consensus size: 40
67091448 GAGCTTCTAT
* * *
67091458 TAAGCTCTTATGAGCTTCT-ATTGGCGTGTTTCGGGTGGA
1 TAAGCTCTTATGAGCTTCTGTTTGGCGTCTTTCGGGTGAA
* *
67091497 TAAGCTCTTATGAGCTTCTGTTTGGCGTACTTT-TGTTGAA
1 TAAGCTCTTATGAGCTTCTGTTTGGCGT-CTTTCGGGTGAA
*
67091537 TAAGCTTTTATGAGCTTCTGT
1 TAAGCTCTTATGAGCTTCTGT
67091558 CTGGTATGTT
Statistics
Matches: 53, Mismatches: 6, Indels: 3
0.85 0.10 0.05
Matches are distributed among these distances:
39 19 0.36
40 31 0.58
41 3 0.06
ACGTcount: A:0.17, C:0.15, G:0.25, T:0.43
Consensus pattern (40 bp):
TAAGCTCTTATGAGCTTCTGTTTGGCGTCTTTCGGGTGAA
Found at i:67092657 original size:20 final size:20
Alignment explanation
Indices: 67092632--67092672 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
67092622 CCTACAATCC
* * *
67092632 AAAATTTTCAACTTTTTCCT
1 AAAATTTCCAAATGTTTCCT
67092652 AAAATTTCCAAATGTTTCCT
1 AAAATTTCCAAATGTTTCCT
67092672 A
1 A
67092673 TTTAGTCCCG
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.34, C:0.20, G:0.02, T:0.44
Consensus pattern (20 bp):
AAAATTTCCAAATGTTTCCT
Found at i:67100365 original size:177 final size:177
Alignment explanation
Indices: 67100110--67100503 Score: 671
Period size: 177 Copynumber: 2.2 Consensus size: 177
67100100 ACAAGGCTTC
* * *
67100110 TGGCTAAAATCTGCTCCATAGTCGATACATGGAGATAAGACTCGCCATCTTTGATCTGCTCGATA
1 TGGCTAAAATCTGCTCCATAGCCGATACATGGAGATAAGACTCACCATCTTTGATCTGCTCCATA
* *
67100175 ACCGATACATGGAGATAAGATCTGTAATTTTCAGCCTGTTACCCTAATACTTAGGGGGTTAAGAG
66 ACCGATACATGGAGATAAGATCTGTAATTTTCAGCCTGTTACCCTAATACTTAGGGGATTAAGAC
* *
67100240 TCGTATCTTCAACCTGCTCTCTTGCTATCTCAGAGAGATAAGGTCGG
131 TCGTATCTTCAACCTACTCTCTTGCTATCTCAAAGAGATAAGGTCGG
* *
67100287 TGGCTAAAATCTTCTCCATAGCCGATACATAGAGATAAGACTCACCATCTTTGATCTGCTCCATA
1 TGGCTAAAATCTGCTCCATAGCCGATACATGGAGATAAGACTCACCATCTTTGATCTGCTCCATA
* * *
67100352 GCCGATACATGGAGATAAGATCTGTAATTTTCAGCCTGTTACCCTACTGCTTAGGGGATTAAGAC
66 ACCGATACATGGAGATAAGATCTGTAATTTTCAGCCTGTTACCCTAATACTTAGGGGATTAAGAC
*
67100417 TCGTATCTTCAACCTACTCTCTTGCTATTTCAAAGAGATAAGGTCGG
131 TCGTATCTTCAACCTACTCTCTTGCTATCTCAAAGAGATAAGGTCGG
67100464 TGGCTAAAATCTGCTCCATAGCCGATACATGGAGATAAGA
1 TGGCTAAAATCTGCTCCATAGCCGATACATGGAGATAAGA
67100504 TCTGTAATTT
Statistics
Matches: 202, Mismatches: 15, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
177 202 1.00
ACGTcount: A:0.28, C:0.22, G:0.20, T:0.29
Consensus pattern (177 bp):
TGGCTAAAATCTGCTCCATAGCCGATACATGGAGATAAGACTCACCATCTTTGATCTGCTCCATA
ACCGATACATGGAGATAAGATCTGTAATTTTCAGCCTGTTACCCTAATACTTAGGGGATTAAGAC
TCGTATCTTCAACCTACTCTCTTGCTATCTCAAAGAGATAAGGTCGG
Found at i:67100586 original size:132 final size:132
Alignment explanation
Indices: 67100340--67100635 Score: 502
Period size: 132 Copynumber: 2.2 Consensus size: 132
67100330 ACCATCTTTG
*
67100340 ATCTGCTCCATAGCCGATACATGGAGATAAGATCTGTAATTTTCAGCCTGTTACCCTACTGCTTA
1 ATCTGCTCCATAGCCGATACATGGAGATAAGATCTGTAATTTTCAGCCTGTGACCCTACTGCTTA
* **
67100405 GGGGATTAAGACTCGTATCTTCAACCTACTCTCTTGCTATTTCAAAGAGATAAGGTCGGTGGCTA
66 GGGGATTAAAACTCGTATCTTCAACCTACTCTCTTGCTACCTCAAAGAGATAAGGTCGGTGGCTA
67100470 AA
131 AA
67100472 ATCTGCTCCATAGCCGATACATGGAGATAAGATCTGTAATTTTCAGCCTGTGACCCTACTGCTTA
1 ATCTGCTCCATAGCCGATACATGGAGATAAGATCTGTAATTTTCAGCCTGTGACCCTACTGCTTA
* * * *
67100537 GGGGGTTAAAACTCGTATCTTCAACCTGCTCTCTTGCTACCTGAGAGAGATAAGGTCGGTGGCTA
66 GGGGATTAAAACTCGTATCTTCAACCTACTCTCTTGCTACCTCAAAGAGATAAGGTCGGTGGCTA
67100602 AA
131 AA
* *
67100604 ATCTGTTCCATAGTCGATACATGGAGATAAGA
1 ATCTGCTCCATAGCCGATACATGGAGATAAGA
67100636 CTTGCCATCT
Statistics
Matches: 154, Mismatches: 10, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
132 154 1.00
ACGTcount: A:0.27, C:0.22, G:0.21, T:0.30
Consensus pattern (132 bp):
ATCTGCTCCATAGCCGATACATGGAGATAAGATCTGTAATTTTCAGCCTGTGACCCTACTGCTTA
GGGGATTAAAACTCGTATCTTCAACCTACTCTCTTGCTACCTCAAAGAGATAAGGTCGGTGGCTA
AA
Found at i:67100659 original size:45 final size:45
Alignment explanation
Indices: 67100604--67100725 Score: 226
Period size: 45 Copynumber: 2.7 Consensus size: 45
67100594 GGTGGCTAAA
* *
67100604 ATCTGTTCCATAGTCGATACATGGAGATAAGACTTGCCATCTTTG
1 ATCTGCTCCATAGCCGATACATGGAGATAAGACTTGCCATCTTTG
67100649 ATCTGCTCCATAGCCGATACATGGAGATAAGACTTGCCATCTTTG
1 ATCTGCTCCATAGCCGATACATGGAGATAAGACTTGCCATCTTTG
67100694 ATCTGCTCCATAGCCGATACATGGAGATAAGA
1 ATCTGCTCCATAGCCGATACATGGAGATAAGA
67100726 TCTGTAATTT
Statistics
Matches: 75, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
45 75 1.00
ACGTcount: A:0.29, C:0.22, G:0.20, T:0.29
Consensus pattern (45 bp):
ATCTGCTCCATAGCCGATACATGGAGATAAGACTTGCCATCTTTG
Found at i:67100957 original size:134 final size:133
Alignment explanation
Indices: 67100649--67101020 Score: 521
Period size: 134 Copynumber: 2.8 Consensus size: 133
67100639 GCCATCTTTG
* *
67100649 ATCTGCTCCATAGCCGATACATGGAGATAAGACTTGCCATCTTTGATCTGCTCCATAGCCGATAC
1 ATCTGCTCCATAGCCGATACATGGAGATAAGACTCGCCATTTTTGATCTGCTCCATAGCCGATAC
* * * *** *
67100714 ATGGAGATAAGATCTGTAATTTTCAGCCTATTACCCTACTGCTTAGGGGGTTAAGACTTGTGGCT
66 ATGGAGATAAGATCTGTAACTTTCAGCCTATTACCCTACTCCTCAGAAAGATAAGACTTGTGGCT
67100779 AAA
131 AAA
* *
67100782 AACTGCTCCATAGCCGATACATGGAGATAAGACTCGCCATTTTTGATCTGCTCTATAGCCGATAC
1 ATCTGCTCCATAGCCGATACATGGAGATAAGACTCGCCATTTTTGATCTGCTCCATAGCCGATAC
* * *
67100847 ATGGAGATAAGATCTGTAACTTTCAGTCTACTT-CCTTGCTACCTCAGAAAGATAAGACTTGTGG
66 ATGGAGATAAGATCTGTAACTTTCAGCCTA-TTACCCTACT-CCTCAGAAAGATAAGACTTGTGG
67100911 CTAAA
129 CTAAA
* * * *
67100916 ATCTACTCCATAGCCGATACATGGAGATAAGACCCGTCATTTTTTATCTGCTCCATAGCCGATAC
1 ATCTGCTCCATAGCCGATACATGGAGATAAGACTCGCCATTTTTGATCTGCTCCATAGCCGATAC
* * * *
67100981 ATGGAGATAAGATCTGTAATTTTTAGCATGTTACCCTACT
66 ATGGAGATAAGATCTGTAACTTTCAGCCTATTACCCTACT
67101021 GCTTATGGGG
Statistics
Matches: 209, Mismatches: 27, Indels: 5
0.87 0.11 0.02
Matches are distributed among these distances:
133 96 0.46
134 113 0.54
ACGTcount: A:0.28, C:0.22, G:0.19, T:0.30
Consensus pattern (133 bp):
ATCTGCTCCATAGCCGATACATGGAGATAAGACTCGCCATTTTTGATCTGCTCCATAGCCGATAC
ATGGAGATAAGATCTGTAACTTTCAGCCTATTACCCTACTCCTCAGAAAGATAAGACTTGTGGCT
AAA
Found at i:67101004 original size:45 final size:44
Alignment explanation
Indices: 67100604--67100997 Score: 214
Period size: 45 Copynumber: 8.8 Consensus size: 44
67100594 GGTGGCTAAA
* * *
67100604 ATCTGTTCCATAGTCGATACATGGAGATAAGACTTGCCATCTTTG
1 ATCTGCTCCATAGCCGATACATGGAGATAAGAC-TGTCATCTTTG
*
67100649 ATCTGCTCCATAGCCGATACATGGAGATAAGACTTGCCATCTTTG
1 ATCTGCTCCATAGCCGATACATGGAGATAAGAC-TGTCATCTTTG
* *
67100694 ATCTGCTCCATAGCCGATACATGGAGATAAGATCTGTAAT-TTTC
1 ATCTGCTCCATAGCCGATACATGGAGATAAGA-CTGTCATCTTTG
* ** * * * * * * * ** ***
67100738 AGCCTATTACCCTA-CTGCT-TAGGGGGTTAAGACTTGT-GGCTAAA
1 A-TCTGCT-CCATAGCCGATACATGGAGATAAGAC-TGTCATCTTTG
* * *
67100782 AACTGCTCCATAGCCGATACATGGAGATAAGACTCGCCATTTTTG
1 ATCTGCTCCATAGCCGATACATGGAGATAAGACT-GTCATCTTTG
* * *
67100827 ATCTGCTCTATAGCCGATACATGGAGATAAGATCTGT-AACTTTC
1 ATCTGCTCCATAGCCGATACATGGAGATAAGA-CTGTCATCTTTG
* * * * ** ***
67100871 AGTCTACTTCC-TTG-C--TACCTCAGAAAGATAAGACTTGT-GGCTAAA
1 A-TCTGC-TCCATAGCCGATACAT--G-GAGATAAGAC-TGTCATCTTTG
* * * *
67100916 ATCTACTCCATAGCCGATACATGGAGATAAGACCCGTCATTTTTT
1 ATCTGCTCCATAGCCGATACATGGAGATAAGA-CTGTCATCTTTG
67100961 ATCTGCTCCATAGCCGATACATGGAGATAAGATCTGT
1 ATCTGCTCCATAGCCGATACATGGAGATAAGA-CTGT
67100998 AATTTTTAGC
Statistics
Matches: 261, Mismatches: 66, Indels: 44
0.70 0.18 0.12
Matches are distributed among these distances:
42 8 0.03
43 11 0.04
44 54 0.21
45 175 0.67
46 9 0.03
47 4 0.02
ACGTcount: A:0.28, C:0.22, G:0.20, T:0.30
Consensus pattern (44 bp):
ATCTGCTCCATAGCCGATACATGGAGATAAGACTGTCATCTTTG
Found at i:67101296 original size:64 final size:64
Alignment explanation
Indices: 67101195--67101322 Score: 193
Period size: 64 Copynumber: 2.0 Consensus size: 64
67101185 TCATGTATCT
* * * *
67101195 ATGCTTGTGCCAAGTAATTAGGATGCTATGATCGAAATGAATCATATGCTCCTAACTAAATGTG
1 ATGCTTATGCCAAATAAATAGGATGCTATGATCGAAATGAATCAAATGCTCCTAACTAAATGTG
* * *
67101259 ATGCTTATGTCAAATAAATAGGATGCTATGATTGAAATGAATCAAATGCTCCTAACTAGATGTG
1 ATGCTTATGCCAAATAAATAGGATGCTATGATCGAAATGAATCAAATGCTCCTAACTAAATGTG
67101323 TTATTATATG
Statistics
Matches: 57, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
64 57 1.00
ACGTcount: A:0.35, C:0.14, G:0.20, T:0.31
Consensus pattern (64 bp):
ATGCTTATGCCAAATAAATAGGATGCTATGATCGAAATGAATCAAATGCTCCTAACTAAATGTG
Found at i:67102953 original size:16 final size:15
Alignment explanation
Indices: 67102919--67102968 Score: 50
Period size: 15 Copynumber: 3.3 Consensus size: 15
67102909 CTATAATATC
67102919 TTTTTGTTTTTT--T
1 TTTTTGTTTTTTCCT
*
67102932 TGTTTTTTTTCTTTCCCT
1 T-TTTTGTTT-TTT-CCT
67102950 TTTTTGTTTTTTCCT
1 TTTTTGTTTTTTCCT
67102965 TTTT
1 TTTT
67102969 GGCCATTTTT
Statistics
Matches: 30, Mismatches: 2, Indels: 8
0.75 0.05 0.20
Matches are distributed among these distances:
13 1 0.03
14 7 0.23
15 10 0.33
16 3 0.10
17 7 0.23
18 2 0.07
ACGTcount: A:0.00, C:0.12, G:0.06, T:0.82
Consensus pattern (15 bp):
TTTTTGTTTTTTCCT
Found at i:67111635 original size:22 final size:23
Alignment explanation
Indices: 67111605--67111660 Score: 73
Period size: 20 Copynumber: 2.5 Consensus size: 23
67111595 TTAATCCATC
*
67111605 TATTTTTATTTGTTTGAAATTGG-
1 TATTTTTATTT-TTTCAAATTGGT
67111628 TA-TTTTA-TTTTTCAAATTGGT
1 TATTTTTATTTTTTCAAATTGGT
67111649 TATTTTTATTTT
1 TATTTTTATTTT
67111661 CAGTTTTAGT
Statistics
Matches: 29, Mismatches: 1, Indels: 6
0.81 0.03 0.17
Matches are distributed among these distances:
20 10 0.34
21 4 0.14
22 10 0.34
23 5 0.17
ACGTcount: A:0.21, C:0.02, G:0.11, T:0.66
Consensus pattern (23 bp):
TATTTTTATTTTTTCAAATTGGT
Found at i:67111646 original size:20 final size:22
Alignment explanation
Indices: 67111605--67111660 Score: 71
Period size: 22 Copynumber: 2.5 Consensus size: 22
67111595 TTAATCCATC
*
67111605 TATTTTTATTTGTTTGAAATTGG-
1 TATTTTTA-TT-TTTCAAATTGGT
67111628 TA-TTTTATTTTTCAAATTGGT
1 TATTTTTATTTTTCAAATTGGT
67111649 TATTTTTATTTT
1 TATTTTTATTTT
67111661 CAGTTTTAGT
Statistics
Matches: 30, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
20 10 0.33
21 4 0.13
22 14 0.47
23 2 0.07
ACGTcount: A:0.21, C:0.02, G:0.11, T:0.66
Consensus pattern (22 bp):
TATTTTTATTTTTCAAATTGGT
Found at i:67114133 original size:22 final size:22
Alignment explanation
Indices: 67114083--67114133 Score: 57
Period size: 22 Copynumber: 2.3 Consensus size: 22
67114073 AGTTATAACA
*
67114083 TGTTAAATTATTTATTACTCTT
1 TGTTAAATTATTTATGACTCTT
** * *
67114105 TAATAAATTATTTATGAGTTTT
1 TGTTAAATTATTTATGACTCTT
67114127 TGTTAAA
1 TGTTAAA
67114134 AAAATATTTA
Statistics
Matches: 22, Mismatches: 7, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.33, C:0.04, G:0.08, T:0.55
Consensus pattern (22 bp):
TGTTAAATTATTTATGACTCTT
Found at i:67115897 original size:47 final size:47
Alignment explanation
Indices: 67115828--67115997 Score: 224
Period size: 47 Copynumber: 3.6 Consensus size: 47
67115818 CGCCCATAAG
67115828 CGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATCTCA
1 CGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATCTCA
* *
67115875 CGAACTCGGACTCAACTCAACGAGTTCGG--G-C-A-TTCGCATCCATAA
1 CGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT-C-TCA
* * *
67115920 GTGAACTCAGACTCAACTCAATGAGTTCGGATGCCTAGTTACATCTCA
1 -CGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATCTCA
67115968 CGAACTCGGACTCAACTCAACGAGTTCGGA
1 CGAACTCGGACTCAACTCAACGAGTTCGGA
67115998 CGTTCGCATT
Statistics
Matches: 104, Mismatches: 10, Indels: 18
0.79 0.08 0.14
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 3 0.03
46 26 0.25
47 56 0.54
48 3 0.03
49 2 0.02
50 4 0.04
51 2 0.02
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (47 bp):
CGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:67115946 original size:46 final size:45
Alignment explanation
Indices: 67115822--67116040 Score: 180
Period size: 47 Copynumber: 4.7 Consensus size: 45
67115812 GTAACCCGCC
* *
67115822 CATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CATAAGTGAACTCGGACTCAACTCAACGAGTTCGG--G-C-A-TTCGCAT
* *
67115871 C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGGCATTCGCAT
1 CATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCATTCGCAT
* * *
67115914 CCATAAGTGAACTCAGACTCAACTCAATGAGTTCGGATGCCTAGTT-ACAT
1 -CATAAGTGAACTCGGACTCAACTCAACGAGTTCGG--G-C-A-TTCGCAT
* * * *
67115964 C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCATT
1 CATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCATTCGCA-T
*
67116008 CATAAGTGAACTTGGACTCAACTCAACGAGTTC
1 CATAAGTGAACTCGGACTCAACTCAACGAGTTC
67116041 AGATGCTCAA
Statistics
Matches: 140, Mismatches: 17, Indels: 29
0.75 0.09 0.16
Matches are distributed among these distances:
42 4 0.03
43 6 0.04
44 5 0.04
45 5 0.04
46 51 0.36
47 55 0.39
48 5 0.04
49 3 0.02
50 4 0.03
51 2 0.01
ACGTcount: A:0.29, C:0.28, G:0.20, T:0.23
Consensus pattern (45 bp):
CATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCATTCGCAT
Found at i:67115980 original size:93 final size:93
Alignment explanation
Indices: 67115821--67116046 Score: 380
Period size: 93 Copynumber: 2.4 Consensus size: 93
67115811 TGTAACCCGC
*
67115821 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATCTCACGAACTCGGAC
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATCTCACGAACTCGGAC
*
67115886 TCAACTCAACGAGTTCGGGCATTCGCAT
66 TCAACTCAACGAGTTCGGACATTCGCAT
* *
67115914 CCATAAGTGAACTCAGACTCAACTCAATGAGTTCGGATGCCTAGTTACATCTCACGAACTCGGAC
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATCTCACGAACTCGGAC
*
67115979 TCAACTCAACGAGTTCGGACGTTCGCAT
66 TCAACTCAACGAGTTCGGACATTCGCAT
* * *
67116007 TCATAAGTGAACTTGGACTCAACTCAACGAGTTCAGATGC
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGC
67116047 TCAAATATCT
Statistics
Matches: 123, Mismatches: 10, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 123 1.00
ACGTcount: A:0.29, C:0.28, G:0.20, T:0.23
Consensus pattern (93 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATCTCACGAACTCGGAC
TCAACTCAACGAGTTCGGACATTCGCAT
Found at i:67117703 original size:23 final size:23
Alignment explanation
Indices: 67117677--67117729 Score: 56
Period size: 23 Copynumber: 2.3 Consensus size: 23
67117667 TTCAAAAAAC
67117677 TAAATAAAATTTA-AAAATCTATA
1 TAAATAAAATTTAGAAAAT-TATA
* *
67117700 TAAA-ATGAATTTAGAATATTATA
1 TAAATA-AAATTTAGAAAATTATA
67117723 TAAATAA
1 TAAATAA
67117730 TTGGAATAAA
Statistics
Matches: 24, Mismatches: 3, Indels: 6
0.73 0.09 0.18
Matches are distributed among these distances:
22 1 0.04
23 18 0.75
24 5 0.21
ACGTcount: A:0.58, C:0.02, G:0.04, T:0.36
Consensus pattern (23 bp):
TAAATAAAATTTAGAAAATTATA
Found at i:67121113 original size:31 final size:31
Alignment explanation
Indices: 67121066--67121144 Score: 122
Period size: 31 Copynumber: 2.5 Consensus size: 31
67121056 TTTAACGATT
*
67121066 ACTGCGCCGAAGCCTTTTCATAAATCATATC
1 ACTGGGCCGAAGCCTTTTCATAAATCATATC
* *
67121097 ACTGGGCCAAAGCCTTTTCATAAATCATTTC
1 ACTGGGCCGAAGCCTTTTCATAAATCATATC
*
67121128 ACTGGGTCGAAGCCTTT
1 ACTGGGCCGAAGCCTTT
67121145 ACTGTAAACG
Statistics
Matches: 43, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 43 1.00
ACGTcount: A:0.27, C:0.27, G:0.16, T:0.30
Consensus pattern (31 bp):
ACTGGGCCGAAGCCTTTTCATAAATCATATC
Found at i:67121219 original size:42 final size:42
Alignment explanation
Indices: 67121172--67121259 Score: 122
Period size: 42 Copynumber: 2.1 Consensus size: 42
67121162 CCATAGGCCA
* ** *
67121172 ATTTCAATATCACATGTAATGTCAATGGATGTATGAAAGCCC
1 ATTTCAATATCACATGAAATACCAATGAATGTATGAAAGCCC
* *
67121214 ATTTCAATATCACGTGAAATACCAATGAATGTATGCAAGCCC
1 ATTTCAATATCACATGAAATACCAATGAATGTATGAAAGCCC
67121256 ATTT
1 ATTT
67121260 GGGGAGACTA
Statistics
Matches: 40, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
42 40 1.00
ACGTcount: A:0.36, C:0.18, G:0.15, T:0.31
Consensus pattern (42 bp):
ATTTCAATATCACATGAAATACCAATGAATGTATGAAAGCCC
Found at i:67121483 original size:52 final size:52
Alignment explanation
Indices: 67121404--67122281 Score: 1634
Period size: 52 Copynumber: 16.9 Consensus size: 52
67121394 CCTCTTTAAT
* *
67121404 AACTGGGGCA-AAGCCCTTTTCGATAAACTGGGGCATAAGCCCTTTTCAATA
1 AACTAGGGCATAAGCCCTTTTCGGTAAACTGGGGCATAAGCCCTTTTCAATA
* *
67121455 AACTGGGGCATAAACCCTTTTCGGTAAACTGGGGCATAAGCCCTTTTCAATA
1 AACTAGGGCATAAGCCCTTTTCGGTAAACTGGGGCATAAGCCCTTTTCAATA
*
67121507 AACTAGGGCATAAGCCCTTTTCGGTAAACTGGGGCATAAGCCCTTTTGCACT-
1 AACTAGGGCATAAGCCCTTTTCGGTAAACTGGGGCATAAGCCCTTTT-CAATA
** ****
67121559 TCCTCCATCATAAGCCCTTTTCGGTAAACTGGGGCATAAGCCCTTTTCAATA
1 AACTAGGGCATAAGCCCTTTTCGGTAAACTGGGGCATAAGCCCTTTTCAATA
67121611 AACTAGGGCATAAGCCCTTTTCGGTAAACTGGGGCATAAGCCCTTTTCAATA
1 AACTAGGGCATAAGCCCTTTTCGGTAAACTGGGGCATAAGCCCTTTTCAATA
67121663 AACTAGGGCATAAGCCCTTTTCGGTAAACTGGGGCATAAGCCCTTTTCAATA
1 AACTAGGGCATAAGCCCTTTTCGGTAAACTGGGGCATAAGCCCTTTTCAATA
67121715 AACTAGGGCATAAGCCCTTTTCGGTAAACTGGGGCATAAGCCCTTTTCAATA
1 AACTAGGGCATAAGCCCTTTTCGGTAAACTGGGGCATAAGCCCTTTTCAATA
67121767 AACTAGGGCATAAGCCCTTTTCGGTAAACTGGGGCATAAGCCCTTTTCAATA
1 AACTAGGGCATAAGCCCTTTTCGGTAAACTGGGGCATAAGCCCTTTTCAATA
67121819 AACTAGGGCATAAGCCCTTTTCGGTAAACTGGGGCATAAGCCCTTTTCAATA
1 AACTAGGGCATAAGCCCTTTTCGGTAAACTGGGGCATAAGCCCTTTTCAATA
67121871 AACTAGGGCATAAGCCCTTTTCGGTAAACTGGGGCATAAGCCCTTTTCAATA
1 AACTAGGGCATAAGCCCTTTTCGGTAAACTGGGGCATAAGCCCTTTTCAATA
67121923 AACTAGGGCATAAGCCCTTTTCGGTAAACTGGGGCATAAGCCCTTTTCAATA
1 AACTAGGGCATAAGCCCTTTTCGGTAAACTGGGGCATAAGCCCTTTTCAATA
67121975 AACTAGGGCATAAGCCCTTTTCGGTAAACTGGGGCATAAGCCCTTTTCAATA
1 AACTAGGGCATAAGCCCTTTTCGGTAAACTGGGGCATAAGCCCTTTTCAATA
67122027 AACTAGGGCATAAGCCCTTTTCGGTAAACTGGGGCATAAGCCCTTTTCAATA
1 AACTAGGGCATAAGCCCTTTTCGGTAAACTGGGGCATAAGCCCTTTTCAATA
67122079 AACTAGGGCATAAGCCCTTTTCGGTAAACTGGGGCATAAGCCCTTTTCAATA
1 AACTAGGGCATAAGCCCTTTTCGGTAAACTGGGGCATAAGCCCTTTTCAATA
67122131 AACTAGGGCATAAGCCCTTTTCGGTAAACTGGGGCATAAGCCCTTTTCAATA
1 AACTAGGGCATAAGCCCTTTTCGGTAAACTGGGGCATAAGCCCTTTTCAATA
67122183 AACTAGGGCATAAGCCCTTTTCGGTAAACTGGGGCATAAGCCCTTTTCAATA
1 AACTAGGGCATAAGCCCTTTTCGGTAAACTGGGGCATAAGCCCTTTTCAATA
67122235 AACTAGGGCATAAGCCCTTTTCGGTAAACTGGGGCATAAGCCCTTTT
1 AACTAGGGCATAAGCCCTTTTCGGTAAACTGGGGCATAAGCCCTTTT
67122282 GCACTTCCTC
Statistics
Matches: 806, Mismatches: 18, Indels: 5
0.97 0.02 0.01
Matches are distributed among these distances:
51 13 0.02
52 790 0.98
53 3 0.00
ACGTcount: A:0.28, C:0.24, G:0.21, T:0.27
Consensus pattern (52 bp):
AACTAGGGCATAAGCCCTTTTCGGTAAACTGGGGCATAAGCCCTTTTCAATA
Found at i:67124084 original size:31 final size:31
Alignment explanation
Indices: 67124046--67124115 Score: 122
Period size: 31 Copynumber: 2.3 Consensus size: 31
67124036 TATTGCGCCG
67124046 AAGCCTTTTCATAAATCATATCACTGGGCCA
1 AAGCCTTTTCATAAATCATATCACTGGGCCA
* *
67124077 AAGCCTTTTCATAAATCATTTCACTGGGCCG
1 AAGCCTTTTCATAAATCATATCACTGGGCCA
67124108 AAGCCTTT
1 AAGCCTTT
67124116 ACTGTAAACG
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
31 37 1.00
ACGTcount: A:0.29, C:0.26, G:0.14, T:0.31
Consensus pattern (31 bp):
AAGCCTTTTCATAAATCATATCACTGGGCCA
Found at i:67124211 original size:42 final size:42
Alignment explanation
Indices: 67124143--67124230 Score: 115
Period size: 42 Copynumber: 2.1 Consensus size: 42
67124133 CCATAGGCCA
* ** *
67124143 ATTTCAATATCACAGGTAATGTCAATGGATGTATGCAAGCCC
1 ATTTCAATATCACAGGAAATACCAATGAATGTATGCAAGCCC
*
67124185 ATTTCAATATCAC-GTGAAATACCAATGAATGTATGCAATCCC
1 ATTTCAATATCACAG-GAAATACCAATGAATGTATGCAAGCCC
67124227 ATTT
1 ATTT
67124231 GGGGAGACTA
Statistics
Matches: 40, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
41 1 0.03
42 39 0.98
ACGTcount: A:0.35, C:0.19, G:0.15, T:0.31
Consensus pattern (42 bp):
ATTTCAATATCACAGGAAATACCAATGAATGTATGCAAGCCC
Found at i:67124420 original size:26 final size:26
Alignment explanation
Indices: 67124375--67124748 Score: 500
Period size: 26 Copynumber: 14.4 Consensus size: 26
67124365 CCTCTTTAAT
*
67124375 AACTGGGGCA-AAGCCCTTTTCGGTA
1 AACTGGGGCATAAGCCCTTTTCAGTA
*
67124400 AACTGGGGCATAAGCCCTTTTCAATA
1 AACTGGGGCATAAGCCCTTTTCAGTA
*
67124426 AACTGGGGCATAAGCCCTTTTCGGTA
1 AACTGGGGCATAAGCCCTTTTCAGTA
*
67124452 AACTGGGGCATAAGCCCTTTTGCACT-
1 AACTGGGGCATAAGCCCTTTT-CAGTA
** **** *
67124478 TCCTCCATCATAAGCCCTTTTCGGTA
1 AACTGGGGCATAAGCCCTTTTCAGTA
*
67124504 AACTGGGGCATAAGCCCTTTTCAATA
1 AACTGGGGCATAAGCCCTTTTCAGTA
* *
67124530 AACTAGGGCATAAGCCCTTTTCGGTA
1 AACTGGGGCATAAGCCCTTTTCAGTA
*
67124556 AACTGGGGCATAAGCCCTTTTCAATA
1 AACTGGGGCATAAGCCCTTTTCAGTA
* *
67124582 AACTAGGGCATAAGCCCTTTTCGGTA
1 AACTGGGGCATAAGCCCTTTTCAGTA
*
67124608 AACTGGGGCATAAGCCCTTTTCAATA
1 AACTGGGGCATAAGCCCTTTTCAGTA
* *
67124634 AACTAGGGCATAAGCCCTTTTCGGTA
1 AACTGGGGCATAAGCCCTTTTCAGTA
*
67124660 AACTGGGGCATAAGCCCTTTTCAATA
1 AACTGGGGCATAAGCCCTTTTCAGTA
* *
67124686 AACTAGGGCATAAGCCCTTTTCGGTA
1 AACTGGGGCATAAGCCCTTTTCAGTA
*
67124712 AACTGGGGCATAAGCCCTTTTCAATA
1 AACTGGGGCATAAGCCCTTTTCAGTA
*
67124738 AACTAGGGCAT
1 AACTGGGGCAT
67124749 CCATGTTCAT
Statistics
Matches: 299, Mismatches: 47, Indels: 5
0.85 0.13 0.01
Matches are distributed among these distances:
25 12 0.04
26 285 0.95
27 2 0.01
ACGTcount: A:0.28, C:0.24, G:0.21, T:0.27
Consensus pattern (26 bp):
AACTGGGGCATAAGCCCTTTTCAGTA
Found at i:67124448 original size:52 final size:52
Alignment explanation
Indices: 67124375--67124748 Score: 644
Period size: 52 Copynumber: 7.2 Consensus size: 52
67124365 CCTCTTTAAT
*
67124375 AACTGGGGCA-AAGCCCTTTTCGGTAAACTGGGGCATAAGCCCTTTTCAATA
1 AACTAGGGCATAAGCCCTTTTCGGTAAACTGGGGCATAAGCCCTTTTCAATA
* *
67124426 AACTGGGGCATAAGCCCTTTTCGGTAAACTGGGGCATAAGCCCTTTTGCACT-
1 AACTAGGGCATAAGCCCTTTTCGGTAAACTGGGGCATAAGCCCTTTT-CAATA
** ****
67124478 TCCTCCATCATAAGCCCTTTTCGGTAAACTGGGGCATAAGCCCTTTTCAATA
1 AACTAGGGCATAAGCCCTTTTCGGTAAACTGGGGCATAAGCCCTTTTCAATA
67124530 AACTAGGGCATAAGCCCTTTTCGGTAAACTGGGGCATAAGCCCTTTTCAATA
1 AACTAGGGCATAAGCCCTTTTCGGTAAACTGGGGCATAAGCCCTTTTCAATA
67124582 AACTAGGGCATAAGCCCTTTTCGGTAAACTGGGGCATAAGCCCTTTTCAATA
1 AACTAGGGCATAAGCCCTTTTCGGTAAACTGGGGCATAAGCCCTTTTCAATA
67124634 AACTAGGGCATAAGCCCTTTTCGGTAAACTGGGGCATAAGCCCTTTTCAATA
1 AACTAGGGCATAAGCCCTTTTCGGTAAACTGGGGCATAAGCCCTTTTCAATA
67124686 AACTAGGGCATAAGCCCTTTTCGGTAAACTGGGGCATAAGCCCTTTTCAATA
1 AACTAGGGCATAAGCCCTTTTCGGTAAACTGGGGCATAAGCCCTTTTCAATA
67124738 AACTAGGGCAT
1 AACTAGGGCAT
67124749 CCATGTTCAT
Statistics
Matches: 306, Mismatches: 14, Indels: 5
0.94 0.04 0.02
Matches are distributed among these distances:
51 13 0.04
52 290 0.95
53 3 0.01
ACGTcount: A:0.28, C:0.24, G:0.21, T:0.27
Consensus pattern (52 bp):
AACTAGGGCATAAGCCCTTTTCGGTAAACTGGGGCATAAGCCCTTTTCAATA
Found at i:67125352 original size:27 final size:26
Alignment explanation
Indices: 67125318--67125418 Score: 80
Period size: 27 Copynumber: 3.8 Consensus size: 26
67125308 GGGCATATTC
67125318 GTCATTTTACCATACAGGGGTATTACA
1 GTCATTTTACC-TACAGGGGTATTACA
* *
67125345 GTCATTTTCCCCTACAGGGGCT-TTACG
1 GTCATTTT-ACCTACAGGGG-TATTACA
* **
67125372 GTC-TTTTACCTAATAGGGGTATTTTA
1 GTCATTTTACCT-ACAGGGGTATTACA
* *
67125398 GTCATTTCATCCTACAAGGGT
1 GTCATTTTA-CCTACAGGGGT
67125419 GTTTTGGTAA
Statistics
Matches: 58, Mismatches: 10, Indels: 12
0.73 0.12 0.15
Matches are distributed among these distances:
25 4 0.07
26 15 0.26
27 33 0.57
28 6 0.10
ACGTcount: A:0.23, C:0.21, G:0.20, T:0.37
Consensus pattern (26 bp):
GTCATTTTACCTACAGGGGTATTACA
Found at i:67125555 original size:27 final size:27
Alignment explanation
Indices: 67125525--67125650 Score: 198
Period size: 27 Copynumber: 4.7 Consensus size: 27
67125515 TGTAAGTAAG
* *
67125525 GGGTATTTTGGTAATTTTACAAATTGA
1 GGGTATTTTGGTAATTTTACAAACTAA
* *
67125552 GGGTATTTTGGTAATTTCACAAACCAA
1 GGGTATTTTGGTAATTTTACAAACTAA
*
67125579 GGGTATTTTGGTAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTTACAAACTAA
67125606 GGGTATTTTGGTAATTTTACAAACTAA
1 GGGTATTTTGGTAATTTTACAAACTAA
*
67125633 GGGTATTTTAGTAATTTT
1 GGGTATTTTGGTAATTTT
67125651 GTAAATCGAG
Statistics
Matches: 90, Mismatches: 9, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 90 1.00
ACGTcount: A:0.30, C:0.07, G:0.21, T:0.42
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTACAAACTAA
Found at i:67125662 original size:27 final size:27
Alignment explanation
Indices: 67125443--67125745 Score: 155
Period size: 27 Copynumber: 11.1 Consensus size: 27
67125433 ACAAACCAAT
* * *
67125443 GGTATTTCAGTAATTTTGTAAATCAAT
1 GGTATTTTAGTAATTTTATAAATCAAG
*
67125470 GGTATTTCTA-TAATTTTTAGAAAGTCAAG
1 GGTATTT-TAGTAA-TTTTATAAA-TCAAG
* * * *
67125499 GGTATTTTTGTAACTTTGTAAGT-AAGG
1 GGTATTTTAGTAATTTTATAAATCAA-G
* * **
67125526 GGTATTTTGGTAATTTTACAAATTGAG
1 GGTATTTTAGTAATTTTATAAATCAAG
* * * *
67125553 GGTATTTTGGTAATTTCACAAACCAAG
1 GGTATTTTAGTAATTTTATAAATCAAG
* * *
67125580 GGTATTTTGGTAATTTTACAAA-CTAGG
1 GGTATTTTAGTAATTTTATAAATC-AAG
* *
67125607 GGTATTTTGGTAATTTTACAAA-CTAAG
1 GGTATTTTAGTAATTTTATAAATC-AAG
* *
67125634 GGTATTTTAGTAATTTTGTAAATCGAG
1 GGTATTTTAGTAATTTTATAAATCAAG
**** * *
67125661 GGTAAAACAGTAATTCTGTAAATCAAG
1 GGTATTTTAGTAATTTTATAAATCAAG
**** * *
67125688 GGTAAAACAGTAATTCTATAAATCGAG
1 GGTATTTTAGTAATTTTATAAATCAAG
***** *
67125715 GGTAAAACGGTAATTCTATAAATCAAG
1 GGTATTTTAGTAATTTTATAAATCAAG
67125742 GGTA
1 GGTA
67125746 AAACGGTAAT
Statistics
Matches: 232, Mismatches: 36, Indels: 16
0.82 0.13 0.06
Matches are distributed among these distances:
26 3 0.01
27 199 0.86
28 16 0.07
29 14 0.06
ACGTcount: A:0.35, C:0.08, G:0.20, T:0.37
Consensus pattern (27 bp):
GGTATTTTAGTAATTTTATAAATCAAG
Found at i:67125674 original size:81 final size:81
Alignment explanation
Indices: 67125523--67125675 Score: 189
Period size: 81 Copynumber: 1.9 Consensus size: 81
67125513 TTTGTAAGTA
* * * ****
67125523 AGGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTTGGTAATTTCACAAACCAAGGGTATTTT
1 AGGGGTATTTTGGTAATTTTACAAACTAAGGGTATTTTAGTAATTTCACAAACCAAGGGTAAAAC
*
67125588 GGTAATTTTACAAACT
66 AGTAATTTTACAAACT
*** * *
67125604 AGGGGTATTTTGGTAATTTTACAAACTAAGGGTATTTTAGTAATTTTGTAAATCGAGGGTAAAAC
1 AGGGGTATTTTGGTAATTTTACAAACTAAGGGTATTTTAGTAATTTCACAAACCAAGGGTAAAAC
67125669 AGTAATT
66 AGTAATT
67125676 CTGTAAATCA
Statistics
Matches: 59, Mismatches: 13, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
81 59 1.00
ACGTcount: A:0.33, C:0.07, G:0.22, T:0.39
Consensus pattern (81 bp):
AGGGGTATTTTGGTAATTTTACAAACTAAGGGTATTTTAGTAATTTCACAAACCAAGGGTAAAAC
AGTAATTTTACAAACT
Found at i:67125746 original size:27 final size:27
Alignment explanation
Indices: 67125643--67125961 Score: 338
Period size: 27 Copynumber: 11.8 Consensus size: 27
67125633 GGGTATTTTA
* *
67125643 GTAATTTTGTAAATCGAGGGTAAAACA
1 GTAATTCTGTAAATCGAGGGTAAAACG
* *
67125670 GTAATTCTGTAAATCAAGGGTAAAACA
1 GTAATTCTGTAAATCGAGGGTAAAACG
*
67125697 GTAATTCTATAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
* *
67125724 GTAATTCTATAAATCAAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
* * * * * **
67125751 GTAATTCTATAAGTCAAAGGAAAAATA
1 GTAATTCTGTAAATCGAGGGTAAAACG
* * * *
67125778 ATAATTATGTAAATCGGGGGTAAAATG
1 GTAATTCTGTAAATCGAGGGTAAAACG
*
67125805 GTAATTAC-GTAAATCGGGGGTAAAACG
1 GTAATT-CTGTAAATCGAGGGTAAAACG
*
67125832 GTAATTCTGTAAATCGAGGGTAAAACA
1 GTAATTCTGTAAATCGAGGGTAAAACG
* *
67125859 GTAATTCTGTAAGTTGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
* * *
67125886 ATAATTATGTAAATC-AGGGGTAAAACA
1 GTAATTCTGTAAATCGA-GGGTAAAACG
*
67125913 GTAATTATGTAAATC-AGGGGTAAAACG
1 GTAATTCTGTAAATCGA-GGGTAAAACG
* *
67125940 GTAATTCTGAAAATGGAGGGTA
1 GTAATTCTGTAAATCGAGGGTA
67125962 CTTTGGTAAT
Statistics
Matches: 250, Mismatches: 38, Indels: 8
0.84 0.13 0.03
Matches are distributed among these distances:
26 2 0.01
27 247 0.99
28 1 0.00
ACGTcount: A:0.42, C:0.08, G:0.23, T:0.27
Consensus pattern (27 bp):
GTAATTCTGTAAATCGAGGGTAAAACG
Found at i:67125948 original size:81 final size:81
Alignment explanation
Indices: 67125643--67125961 Score: 379
Period size: 81 Copynumber: 3.9 Consensus size: 81
67125633 GGGTATTTTA
* *
67125643 GTAATTTTGTAAATC-GAGGGTAAAACAGTAATTCTGTAAATCAAGGGTAAAACAGTAATTCTAT
1 GTAATTATGTAAATCAG-GGGTAAAACAGTAATTCTGTAAATCAAGGGTAAAACAGTAATTCTGT
67125707 AAATCGAGGGTAAAACG
65 AAATCGAGGGTAAAACG
* * * * * * * * * * *
67125724 GTAATTCTATAAATCAAGGGTAAAACGGTAATTCTATAAGTCAAAGGAAAAATAATAATTATGTA
1 GTAATTATGTAAATCAGGGGTAAAACAGTAATTCTGTAAATCAAGGGTAAAACAGTAATTCTGTA
* *
67125789 AATCGGGGGTAAAATG
66 AATCGAGGGTAAAACG
* * * *
67125805 GTAATTACGTAAATCGGGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACAGTAATTCTGTA
1 GTAATTATGTAAATCAGGGGTAAAACAGTAATTCTGTAAATCAAGGGTAAAACAGTAATTCTGTA
* *
67125870 AGTTGAGGGTAAAACG
66 AATCGAGGGTAAAACG
* * * * *
67125886 ATAATTATGTAAATCAGGGGTAAAACAGTAATTATGTAAATCAGGGGTAAAACGGTAATTCTGAA
1 GTAATTATGTAAATCAGGGGTAAAACAGTAATTCTGTAAATCAAGGGTAAAACAGTAATTCTGTA
*
67125951 AATGGAGGGTA
66 AATCGAGGGTA
67125962 CTTTGGTAAT
Statistics
Matches: 195, Mismatches: 42, Indels: 2
0.82 0.18 0.01
Matches are distributed among these distances:
81 195 1.00
ACGTcount: A:0.42, C:0.08, G:0.23, T:0.27
Consensus pattern (81 bp):
GTAATTATGTAAATCAGGGGTAAAACAGTAATTCTGTAAATCAAGGGTAAAACAGTAATTCTGTA
AATCGAGGGTAAAACG
Found at i:67126057 original size:28 final size:27
Alignment explanation
Indices: 67125985--67126059 Score: 89
Period size: 27 Copynumber: 2.7 Consensus size: 27
67125975 ACAAGTCAAA
*
67125985 TCAGTAATTTTACAAA-TCGAGGGTATT
1 TCAGTAATTTTACAAACT-AAGGGTATT
*
67126012 TCAGTATTTTTACAAACTAAGGGTATT
1 TCAGTAATTTTACAAACTAAGGGTATT
* *
67126039 TCGGTAATTTTAGTAAACTAA
1 TCAGTAATTTTA-CAAACTAA
67126060 AGTATTCTAA
Statistics
Matches: 41, Mismatches: 5, Indels: 3
0.84 0.10 0.06
Matches are distributed among these distances:
27 33 0.80
28 8 0.20
ACGTcount: A:0.35, C:0.11, G:0.16, T:0.39
Consensus pattern (27 bp):
TCAGTAATTTTACAAACTAAGGGTATT
Found at i:67128653 original size:48 final size:48
Alignment explanation
Indices: 67128582--67128677 Score: 192
Period size: 48 Copynumber: 2.0 Consensus size: 48
67128572 CTATCTACAA
67128582 GACACATGTCTTCATTGATTTTGGGTCTATCGAAATTTTGTTGAATAT
1 GACACATGTCTTCATTGATTTTGGGTCTATCGAAATTTTGTTGAATAT
67128630 GACACATGTCTTCATTGATTTTGGGTCTATCGAAATTTTGTTGAATAT
1 GACACATGTCTTCATTGATTTTGGGTCTATCGAAATTTTGTTGAATAT
67128678 TCATATTTTC
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
48 48 1.00
ACGTcount: A:0.25, C:0.12, G:0.19, T:0.44
Consensus pattern (48 bp):
GACACATGTCTTCATTGATTTTGGGTCTATCGAAATTTTGTTGAATAT
Found at i:67131249 original size:18 final size:18
Alignment explanation
Indices: 67131228--67131265 Score: 67
Period size: 18 Copynumber: 2.1 Consensus size: 18
67131218 TGCTTTTCTC
67131228 AGGGCTCCCGCTTGGGCT
1 AGGGCTCCCGCTTGGGCT
*
67131246 AGGGCTCTCGCTTGGGCT
1 AGGGCTCCCGCTTGGGCT
67131264 AG
1 AG
67131266 CGCTGATAGT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.08, C:0.29, G:0.39, T:0.24
Consensus pattern (18 bp):
AGGGCTCCCGCTTGGGCT
Found at i:67132157 original size:20 final size:20
Alignment explanation
Indices: 67132132--67132175 Score: 88
Period size: 20 Copynumber: 2.2 Consensus size: 20
67132122 AACAAACAAA
67132132 CATATCTTGCAGTTGTTGGT
1 CATATCTTGCAGTTGTTGGT
67132152 CATATCTTGCAGTTGTTGGT
1 CATATCTTGCAGTTGTTGGT
67132172 CATA
1 CATA
67132176 CTTTTTTTTG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.18, C:0.16, G:0.23, T:0.43
Consensus pattern (20 bp):
CATATCTTGCAGTTGTTGGT
Found at i:67132830 original size:47 final size:48
Alignment explanation
Indices: 67132735--67132841 Score: 135
Period size: 47 Copynumber: 2.2 Consensus size: 48
67132725 AAGAATATCG
* * * ** **
67132735 TTACTTTTCGTAAGCCTTCCCTATGTGTTTGAGAGTAGGGTTATATTA
1 TTACTTTTCGTAAGCCTTCCCCATGCGTTTGAAAACAGGACTATATTA
*
67132783 TTTCTTTTCGTAAGCC-TCCCCATGCGTTTGAAAACAGGACTATATTA
1 TTACTTTTCGTAAGCCTTCCCCATGCGTTTGAAAACAGGACTATATTA
67132830 TTACTTTTCGTA
1 TTACTTTTCGTA
67132842 GGTCTTTCTA
Statistics
Matches: 50, Mismatches: 9, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
47 35 0.70
48 15 0.30
ACGTcount: A:0.22, C:0.19, G:0.17, T:0.42
Consensus pattern (48 bp):
TTACTTTTCGTAAGCCTTCCCCATGCGTTTGAAAACAGGACTATATTA
Found at i:67135250 original size:17 final size:18
Alignment explanation
Indices: 67135228--67135266 Score: 62
Period size: 18 Copynumber: 2.2 Consensus size: 18
67135218 TAGAGGAAGC
67135228 TCTCA-TTCTAAGGCTTG
1 TCTCATTTCTAAGGCTTG
*
67135245 TCTCATTTCTTAGGCTTG
1 TCTCATTTCTAAGGCTTG
67135263 TCTC
1 TCTC
67135267 GTTGCGTATC
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
17 5 0.25
18 15 0.75
ACGTcount: A:0.13, C:0.26, G:0.15, T:0.46
Consensus pattern (18 bp):
TCTCATTTCTAAGGCTTG
Found at i:67135916 original size:17 final size:17
Alignment explanation
Indices: 67135894--67135927 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
67135884 TTTTACTACT
67135894 TTACACTTGGTTTAAAA
1 TTACACTTGGTTTAAAA
67135911 TTACACTTGGTTTAAAA
1 TTACACTTGGTTTAAAA
67135928 CTTATAAAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.35, C:0.12, G:0.12, T:0.41
Consensus pattern (17 bp):
TTACACTTGGTTTAAAA
Found at i:67138664 original size:48 final size:48
Alignment explanation
Indices: 67138554--67138743 Score: 238
Period size: 48 Copynumber: 3.9 Consensus size: 48
67138544 ACTCGGGAGT
* * * * *
67138554 CTCGCACCCTAAGTGCCAATATCATGACAACGAAGCCAAATCAATGTAA
1 CTCGCACCCGAAGTGCTAATATCATGGC-CCGAAGCCAAATCAATGAAA
* *
67138603 CTCGCACCTGAAGTGCTAATATCATGGCCTGAAGCCAAATCAATGAAA
1 CTCGCACCCGAAGTGCTAATATCATGGCCCGAAGCCAAATCAATGAAA
** * *
67138651 CTCATACCCGAAGTGCTAATATCTTGGCCCGAAGCCAAAT-AAGTGACA
1 CTCGCACCCGAAGTGCTAATATCATGGCCCGAAGCCAAATCAA-TGAAA
* *
67138699 CTCGCACCCGAAGTGCTGATATCTTGGCCCGAAGCCAAATCAATG
1 CTCGCACCCGAAGTGCTAATATCATGGCCCGAAGCCAAATCAATG
67138744 TATTCCCTAA
Statistics
Matches: 123, Mismatches: 16, Indels: 5
0.85 0.11 0.03
Matches are distributed among these distances:
47 2 0.02
48 95 0.77
49 26 0.21
ACGTcount: A:0.34, C:0.28, G:0.18, T:0.20
Consensus pattern (48 bp):
CTCGCACCCGAAGTGCTAATATCATGGCCCGAAGCCAAATCAATGAAA
Found at i:67141887 original size:28 final size:28
Alignment explanation
Indices: 67141856--67141911 Score: 67
Period size: 28 Copynumber: 2.0 Consensus size: 28
67141846 TTTCTAATTA
* * *
67141856 AATTCAATTTTAATCCTTTTTATATTTT
1 AATTCAATTTAAATACTTTATATATTTT
* *
67141884 AATTTACTTTAAATACTTTATATATTTT
1 AATTCAATTTAAATACTTTATATATTTT
67141912 TATAAATATT
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
28 23 1.00
ACGTcount: A:0.32, C:0.09, G:0.00, T:0.59
Consensus pattern (28 bp):
AATTCAATTTAAATACTTTATATATTTT
Found at i:67142007 original size:14 final size:14
Alignment explanation
Indices: 67141962--67142026 Score: 53
Period size: 14 Copynumber: 4.6 Consensus size: 14
67141952 TTATTTTATC
*
67141962 ATATATTTTATCTAT
1 ATATATTTTAT-TTT
* * *
67141977 AAATTATATTATATT
1 ATA-TATTTTATTTT
67141992 ATATATTTTATTTT
1 ATATATTTTATTTT
*
67142006 ATATA-TTT-CTTT
1 ATATATTTTATTTT
67142018 ATATATTTT
1 ATATATTTT
67142027 TATAAAATTG
Statistics
Matches: 40, Mismatches: 8, Indels: 6
0.74 0.15 0.11
Matches are distributed among these distances:
12 8 0.20
13 6 0.15
14 14 0.35
15 5 0.12
16 7 0.17
ACGTcount: A:0.34, C:0.03, G:0.00, T:0.63
Consensus pattern (14 bp):
ATATATTTTATTTT
Found at i:67142372 original size:21 final size:21
Alignment explanation
Indices: 67142348--67142388 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
67142338 TTTCTTATAT
*
67142348 TTTTATATATTATTTATTTTG
1 TTTTATATACTATTTATTTTG
*
67142369 TTTTTTATACTATTTATTTT
1 TTTTATATACTATTTATTTT
67142389 ACTATATTTT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.22, C:0.02, G:0.02, T:0.73
Consensus pattern (21 bp):
TTTTATATACTATTTATTTTG
Found at i:67154739 original size:206 final size:205
Alignment explanation
Indices: 67154380--67154932 Score: 890
Period size: 206 Copynumber: 2.7 Consensus size: 205
67154370 GATCTGGCTG
*
67154380 AAGCAAGATCCAAGATGATTTGGCATCCTTGTGCTTACAAGGAACAAATTGAAGACATAGCTGAT
1 AAGC-AGATCCAAGATGATTTGGCATCCTTGTGCTTACAAGGAACAAA-TCAAGACATAGCTGAT
* * *
67154445 TTGGCTTTCACGTGCGTACGATGAAGCAAATCTAAGATAATTTGGCATCTCTGTATTGTCAGAGA
64 TTGGCTTTCACGTGCTTACGCTGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGAGA
* *
67154510 GCAGATCGAAGTTTAGCGTCTCCATATTCGACGGAGGGCAGACACATAGCAGATCTAACCTTCAG
129 ACAAATCGAAGTTTAGCGTCTCCATATTCGACGGAGGGCAGACACATAGCAGATCTAACCTTCAG
67154575 ATGATTAGACTA
194 ATGATTAGACTA
* *
67154587 AAGCAGATCCAAGATGATTTGGCATCCTTGTGCTTACAAGGAACAAATCAAAATCATAGTTGATT
1 AAGCAGATCCAAGATGATTTGGCATCCTTGTGCTTACAAGGAACAAATCAAGA-CATAGCTGATT
* *
67154652 TAGCTTTCACGTGCTTACGCTGAAGCAAGTCTAAGATGATTTGGCATCTCTGTATTGTCAGAGAA
65 TGGCTTTCACGTGCTTACGCTGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGAGAA
*
67154717 CAAATCGAAGTTTGGCGTCTCCATATTCGACGGAGGGCAGACACATAGCAGATCTAACCTTCAGA
130 CAAATCGAAGTTTAGCGTCTCCATATTCGACGGAGGGCAGACACATAGCAGATCTAACCTTCAGA
*
67154782 TGATTAGACTG
195 TGATTAGACTA
* * * * *
67154793 AAGTAGATCCAAGATGGTTTGGTATCCTTGTGTTTACAAGGAGCAAATCGAAGACATAGCTGATT
1 AAGCAGATCCAAGATGATTTGGCATCCTTGTGCTTACAAGGAACAAATC-AAGACATAGCTGATT
* * *
67154858 TGGTTTTCGCGTGCTTACGCTGAAGAAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGAGAA
65 TGGCTTTCACGTGCTTACGCTGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGAGAA
67154923 CAAATCGAAG
130 CAAATCGAAG
67154933 AAGCAGATTT
Statistics
Matches: 320, Mismatches: 24, Indels: 5
0.92 0.07 0.01
Matches are distributed among these distances:
205 4 0.01
206 309 0.97
207 7 0.02
ACGTcount: A:0.31, C:0.18, G:0.23, T:0.28
Consensus pattern (205 bp):
AAGCAGATCCAAGATGATTTGGCATCCTTGTGCTTACAAGGAACAAATCAAGACATAGCTGATTT
GGCTTTCACGTGCTTACGCTGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGAGAAC
AAATCGAAGTTTAGCGTCTCCATATTCGACGGAGGGCAGACACATAGCAGATCTAACCTTCAGAT
GATTAGACTA
Found at i:67156405 original size:28 final size:28
Alignment explanation
Indices: 67156374--67156429 Score: 67
Period size: 28 Copynumber: 2.0 Consensus size: 28
67156364 TTTCTAATTA
* * *
67156374 AATTCAATTTTAATCCTTTTTATATTTT
1 AATTCAATTTAAATACTTTATATATTTT
* *
67156402 AATTTACTTTAAATACTTTATATATTTT
1 AATTCAATTTAAATACTTTATATATTTT
67156430 TATAAATATT
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
28 23 1.00
ACGTcount: A:0.32, C:0.09, G:0.00, T:0.59
Consensus pattern (28 bp):
AATTCAATTTAAATACTTTATATATTTT
Found at i:67156525 original size:14 final size:14
Alignment explanation
Indices: 67156480--67156544 Score: 53
Period size: 14 Copynumber: 4.6 Consensus size: 14
67156470 TTATTTTATC
*
67156480 ATATATTTTATCTAT
1 ATATATTTTAT-TTT
* * *
67156495 AAATTATATTATATT
1 ATA-TATTTTATTTT
67156510 ATATATTTTATTTT
1 ATATATTTTATTTT
*
67156524 ATATA-TTT-CTTT
1 ATATATTTTATTTT
67156536 ATATATTTT
1 ATATATTTT
67156545 TATAAAATTG
Statistics
Matches: 40, Mismatches: 8, Indels: 6
0.74 0.15 0.11
Matches are distributed among these distances:
12 8 0.20
13 6 0.15
14 14 0.35
15 5 0.12
16 7 0.17
ACGTcount: A:0.34, C:0.03, G:0.00, T:0.63
Consensus pattern (14 bp):
ATATATTTTATTTT
Found at i:67157822 original size:17 final size:17
Alignment explanation
Indices: 67157800--67157839 Score: 71
Period size: 17 Copynumber: 2.4 Consensus size: 17
67157790 GCTTAAAGGA
*
67157800 GAACACTATCATAATGT
1 GAACACTATCATAATGC
67157817 GAACACTATCATAATGC
1 GAACACTATCATAATGC
67157834 GAACAC
1 GAACAC
67157840 ACTTCCAAGA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
17 22 1.00
ACGTcount: A:0.42, C:0.23, G:0.12, T:0.23
Consensus pattern (17 bp):
GAACACTATCATAATGC
Found at i:67158543 original size:15 final size:15
Alignment explanation
Indices: 67158523--67158597 Score: 96
Period size: 15 Copynumber: 5.0 Consensus size: 15
67158513 GTCATCACCT
67158523 TCGGGTCCTTCAGCA
1 TCGGGTCCTTCAGCA
* *
67158538 TCGGGTCCATCGGCA
1 TCGGGTCCTTCAGCA
*
67158553 TCGGGTCCTTCAGTA
1 TCGGGTCCTTCAGCA
* *
67158568 TCGGATCCTTCAGCC
1 TCGGGTCCTTCAGCA
*
67158583 TCGGATCCTTCAGCA
1 TCGGGTCCTTCAGCA
67158598 GAGGGGCCCT
Statistics
Matches: 51, Mismatches: 9, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
15 51 1.00
ACGTcount: A:0.15, C:0.33, G:0.25, T:0.27
Consensus pattern (15 bp):
TCGGGTCCTTCAGCA
Found at i:67162398 original size:130 final size:130
Alignment explanation
Indices: 67162117--67162437 Score: 321
Period size: 130 Copynumber: 2.4 Consensus size: 130
67162107 TTCCGAAGAG
* * * * *
67162117 ATATTCGATTATTTTGAACAAACGAGAAATTGCAACCCAGCACGATAGGGTATTATTCCCCGAAT
1 ATATTCGATTGTTTTGAACAAA-GAGAAATCGCAACCCAGCACGATAGGGCATGATTCCAC-AAT
* * * * * *
67162182 TGCCAAACATCGAACATTTCTTTCGTTTTAAAGGGTTTTTAGAAAACGTGACTGAAATTCCGAAG
64 CGCCAAACATCAAACATTCCTTTCGTTTTAAAGGGTTTTTAGAAAACATGACTGAAATACCAAAG
*
67162247 GG
129 GA
* * * * * *
67162249 ATCTTCGATCGTTTAGAACAAATGAAAAAAGCGCAACCCAGCACGATAGGGCACGATTCTCAC-A
1 ATATTCGATTGTTTTGAACAAA-G-AGAAATCGCAACCCAGCACGATAGGGCATGATTC-CACAA
* *
67162313 TCGCCAAACATCAAACA-TCCTTT-GTTTTGAAA-GGTTTTTA-ATAACCATGAGTGAAA-ACCT
63 TCGCCAAACATCAAACATTCCTTTCGTTTT-AAAGGGTTTTTAGA-AAACATGACTGAAATACC-
67162373 AAAGGA
125 AAAGGA
* *
67162379 ATATTCGATTGTTTTGAACAAAGGAGAAATCACAACTCAGCACGATAGGGCATGATTCC
1 ATATTCGATTGTTTTGAACAAA-GAGAAATCGCAACCCAGCACGATAGGGCATGATTCC
67162438 CGAATTGTCA
Statistics
Matches: 154, Mismatches: 30, Indels: 14
0.78 0.15 0.07
Matches are distributed among these distances:
128 1 0.01
129 32 0.21
130 48 0.31
131 8 0.05
132 35 0.23
133 28 0.18
134 2 0.01
ACGTcount: A:0.36, C:0.20, G:0.18, T:0.26
Consensus pattern (130 bp):
ATATTCGATTGTTTTGAACAAAGAGAAATCGCAACCCAGCACGATAGGGCATGATTCCACAATCG
CCAAACATCAAACATTCCTTTCGTTTTAAAGGGTTTTTAGAAAACATGACTGAAATACCAAAGGA
Found at i:67165486 original size:132 final size:132
Alignment explanation
Indices: 67165286--67165528 Score: 371
Period size: 132 Copynumber: 1.8 Consensus size: 132
67165276 ATTTTGCTCC
* * * *
67165286 ACTGCAACTTCAGGGAGACAAGATCTACCGAATTCAACCTACTCCACTACAACTTTAGGGAGCTA
1 ACTGCAACTTCAGGAAAACAAGATCTA-CAAATTCAACCTACTCCACTACAACTTTAGGGAGATA
* *
67165351 GGTTAGTGGTTTAAATCTGCTTCACTGTAACTTCAGGAAGCCAAGATTCACCGTTTTCGATCTGA
65 GGTTAGTGGCTTAAATCTGCTTCACTGCAACTTCAGGAAGCCAAGATTCACCGTTTTCGATCTGA
67165416 TCT
130 TCT
* * *
67165419 ACTGTAACTTCAGGAAAACAAGATCTA-AAATTTCAGCCTACTCCACTACAACTTTAGTGAGATA
1 ACTGCAACTTCAGGAAAACAAGATCTACAAA-TTCAACCTACTCCACTACAACTTTAGGGAGATA
*
67165483 GGTTGGTGGCTTAAATCTGCTTCACTGCAACTTCAGGAAGCCAAGA
65 GGTTAGTGGCTTAAATCTGCTTCACTGCAACTTCAGGAAGCCAAGA
67165529 CATGTAGGAT
Statistics
Matches: 99, Mismatches: 10, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
131 2 0.02
132 73 0.74
133 24 0.24
ACGTcount: A:0.31, C:0.23, G:0.19, T:0.28
Consensus pattern (132 bp):
ACTGCAACTTCAGGAAAACAAGATCTACAAATTCAACCTACTCCACTACAACTTTAGGGAGATAG
GTTAGTGGCTTAAATCTGCTTCACTGCAACTTCAGGAAGCCAAGATTCACCGTTTTCGATCTGAT
CT
Found at i:67181230 original size:18 final size:20
Alignment explanation
Indices: 67181201--67181253 Score: 61
Period size: 21 Copynumber: 2.5 Consensus size: 20
67181191 ACTTCGAACT
*
67181201 TTAATTATTTAATTATAAAAAA
1 TTAATTAATT-ATTA-AAAAAA
*
67181223 TTAATTAATAATTCAAAAAAA
1 TTAATTAATTATT-AAAAAAA
67181244 TTAATTAATT
1 TTAATTAATT
67181254 TCCAAGCCAT
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
21 18 0.67
22 9 0.33
ACGTcount: A:0.55, C:0.02, G:0.00, T:0.43
Consensus pattern (20 bp):
TTAATTAATTATTAAAAAAA
Found at i:67182812 original size:25 final size:25
Alignment explanation
Indices: 67182784--67182833 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
67182774 GTGAATGGAA
67182784 CAATACAACACATGTATTTTCTCAT
1 CAATACAACACATGTATTTTCTCAT
67182809 CAATACAACACATGTATTTTCTCAT
1 CAATACAACACATGTATTTTCTCAT
67182834 TATCACATTT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.36, C:0.24, G:0.04, T:0.36
Consensus pattern (25 bp):
CAATACAACACATGTATTTTCTCAT
Found at i:67192837 original size:50 final size:50
Alignment explanation
Indices: 67192712--67192957 Score: 316
Period size: 49 Copynumber: 4.9 Consensus size: 50
67192702 TAGCCAAAGC
* * * *
67192712 TATCTGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGA-CTAAT
1 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAAT
*
67192761 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAAC
1 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAAT
* * * *
67192811 CATCTGATACACGTAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGT
1 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAA-T
* * * * *
67192862 TATCGGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACC-AAT
1 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAAT
* * *
67192911 AATCCGGTACACGTAGTAGCCTGCACTTAGTACTACACGCGTGACCT
1 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCT
67192958 CACAATAGGT
Statistics
Matches: 169, Mismatches: 25, Indels: 5
0.85 0.13 0.03
Matches are distributed among these distances:
49 80 0.47
50 51 0.30
51 38 0.22
ACGTcount: A:0.28, C:0.27, G:0.20, T:0.26
Consensus pattern (50 bp):
TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAAT
Found at i:67193224 original size:27 final size:27
Alignment explanation
Indices: 67193184--67193237 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
67193174 AGGTACAACC
* *
67193184 CATGTAATAGTAATTTAACATTCAATT
1 CATGTAACAATAATTTAACATTCAATT
**
67193211 CATGTAACAATAATTTGTCATTCAATT
1 CATGTAACAATAATTTAACATTCAATT
67193238 TCATATGACA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.39, C:0.13, G:0.07, T:0.41
Consensus pattern (27 bp):
CATGTAACAATAATTTAACATTCAATT
Found at i:67197647 original size:15 final size:15
Alignment explanation
Indices: 67197627--67197659 Score: 66
Period size: 15 Copynumber: 2.2 Consensus size: 15
67197617 GAAAATTCAC
67197627 AACACTATCCGCAAG
1 AACACTATCCGCAAG
67197642 AACACTATCCGCAAG
1 AACACTATCCGCAAG
67197657 AAC
1 AAC
67197660 TCTCCTTACC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.42, C:0.33, G:0.12, T:0.12
Consensus pattern (15 bp):
AACACTATCCGCAAG
Found at i:67201871 original size:24 final size:25
Alignment explanation
Indices: 67201818--67201873 Score: 78
Period size: 25 Copynumber: 2.3 Consensus size: 25
67201808 TTTTTGATAT
* *
67201818 ATGGCTATTCGGAGCTTCCCGATTA
1 ATGGCTCTTCGGAGCTACCCGATTA
67201843 ATGGCTCTTCGGAGCTACCC-ATTA
1 ATGGCTCTTCGGAGCTACCCGATTA
*
67201867 TTGGCTC
1 ATGGCTC
67201874 GCATGAGCTT
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
24 10 0.36
25 18 0.64
ACGTcount: A:0.18, C:0.27, G:0.23, T:0.32
Consensus pattern (25 bp):
ATGGCTCTTCGGAGCTACCCGATTA
Found at i:67207709 original size:25 final size:25
Alignment explanation
Indices: 67207681--67207754 Score: 71
Period size: 25 Copynumber: 3.0 Consensus size: 25
67207671 ATGCTCATAC
* *
67207681 GAGCATGTAAACGAGAAGCTCTTTT
1 GAGCATGTAAACGGGAAGCTCTTGT
* *
67207706 GAGCCATAT-AACGGGAAGCTCATGT
1 GAG-CATGTAAACGGGAAGCTCTTGT
*
67207731 GAGC-TGTATAATGGGAAGCTCTTG
1 GAGCATGTA-AACGGGAAGCTCTTG
67207755 CGATTTATTT
Statistics
Matches: 39, Mismatches: 7, Indels: 6
0.75 0.13 0.12
Matches are distributed among these distances:
23 2 0.05
24 1 0.03
25 32 0.82
26 4 0.10
ACGTcount: A:0.30, C:0.16, G:0.28, T:0.26
Consensus pattern (25 bp):
GAGCATGTAAACGGGAAGCTCTTGT
Found at i:67211268 original size:16 final size:17
Alignment explanation
Indices: 67211236--67211268 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
67211226 TACTGTGTTC
67211236 TTATTTTAATCCTTAAT
1 TTATTTTAATCCTTAAT
*
67211253 TTATTTTTAT-CTTAAT
1 TTATTTTAATCCTTAAT
67211269 CAAGACTTAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 6 0.40
17 9 0.60
ACGTcount: A:0.27, C:0.09, G:0.00, T:0.64
Consensus pattern (17 bp):
TTATTTTAATCCTTAAT
Found at i:67212132 original size:19 final size:18
Alignment explanation
Indices: 67212096--67212143 Score: 53
Period size: 19 Copynumber: 2.6 Consensus size: 18
67212086 ACAAAGTTAC
*
67212096 AGAGAAAGAAATGTGAAA
1 AGAGAAAGAAATGAGAAA
67212114 GAGAGAAAGAAA-GAAGAAA
1 -AGAGAAAGAAATG-AGAAA
*
67212133 AGAAAAAGAAA
1 AGAGAAAGAAA
67212144 AAGGATTAAG
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
18 11 0.42
19 15 0.58
ACGTcount: A:0.69, C:0.00, G:0.27, T:0.04
Consensus pattern (18 bp):
AGAGAAAGAAATGAGAAA
Found at i:67213531 original size:13 final size:13
Alignment explanation
Indices: 67213495--67213531 Score: 56
Period size: 13 Copynumber: 2.8 Consensus size: 13
67213485 TGATAGTTTG
*
67213495 GTATGAATTTATAT
1 GTATG-ATTTGTAT
67213509 GTATGATTTGTAT
1 GTATGATTTGTAT
67213522 GTATGATTTG
1 GTATGATTTG
67213532 CTAATTATCT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
13 17 0.77
14 5 0.23
ACGTcount: A:0.27, C:0.00, G:0.22, T:0.51
Consensus pattern (13 bp):
GTATGATTTGTAT
Found at i:67214043 original size:20 final size:20
Alignment explanation
Indices: 67214015--67214072 Score: 82
Period size: 20 Copynumber: 2.9 Consensus size: 20
67214005 TGCCCATGGG
*
67214015 CAGGCCACACGGGCGTG-CTC
1 CAGGCCACACGGGCATGTC-C
*
67214035 CAGGTCACACGGGCATGTCC
1 CAGGCCACACGGGCATGTCC
67214055 CAGGCCACACGGGCATGT
1 CAGGCCACACGGGCATGT
67214073 GCCCCTATCT
Statistics
Matches: 34, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
20 33 0.97
21 1 0.03
ACGTcount: A:0.19, C:0.36, G:0.33, T:0.12
Consensus pattern (20 bp):
CAGGCCACACGGGCATGTCC
Found at i:67214758 original size:105 final size:104
Alignment explanation
Indices: 67214643--67214984 Score: 364
Period size: 108 Copynumber: 3.2 Consensus size: 104
67214633 TTTTTTGTTC
* * * *
67214643 TGGCCTTCTAATAGCTGGCACCAGGGACTTTTTTCGTGTCCTAATGCAATTTTTTTA-TTGTTCT
1 TGGCCTTCTAATGGCCGGCACCAAGGACTTTTTT-GTGTCCCAATGCAATTTTTTTACTT-TTCT
* * *
67214707 ACACTGATGGTCAGCACCAGACCAGTAAAAAAAATTAGTTT
64 ACACTGATGGTCGGCACTAGACCAGTAAAAAAAATTGGTTT
* *
67214748 TGGCCTTCTAATGGCCGGCACCAAAGATTTTTTTTGTGTCCCAATGCAATTTTTTTTTTACTTTT
1 TGGCCTTCTAATGGCCGGCACCAAGGA-CTTTTTTGTGTCCCAATGCAA---TTTTTTTACTTTT
* ***** *
67214813 CTACATTGATGGTCGGCACTAGACCAGTAAATTTTTTTTTTTGGTTC
62 CTACACTGATGGTCGGCACTAGACCAGTAAA----AAAAATTGGTTT
* *
67214860 TGGCCTTCTAATGGCCGGCACCAAGGACTTTTTTGTGCCCCAATGCAAATTATTTTACTTTTCTA
1 TGGCCTTCTAATGGCCGGCACCAAGGACTTTTTTGTGTCCCAATGC-AATTTTTTTACTTTTCTA
*
67214925 CACTGATGGTCGGCACTAGACTAGCAATTAAAAAAAA-TGGTTT
65 CACTGATGGTCGGCACTAGAC---C-AGTAAAAAAAATTGGTTT
67214968 TGGCCTTCTAATGGCCG
1 TGGCCTTCTAATGGCCG
67214985 AGACCAGAGT
Statistics
Matches: 195, Mismatches: 28, Indels: 25
0.79 0.11 0.10
Matches are distributed among these distances:
105 36 0.18
106 6 0.03
108 60 0.31
109 37 0.19
111 17 0.09
112 34 0.17
113 5 0.03
ACGTcount: A:0.24, C:0.20, G:0.18, T:0.37
Consensus pattern (104 bp):
TGGCCTTCTAATGGCCGGCACCAAGGACTTTTTTGTGTCCCAATGCAATTTTTTTACTTTTCTAC
ACTGATGGTCGGCACTAGACCAGTAAAAAAAATTGGTTT
Found at i:67214942 original size:109 final size:104
Alignment explanation
Indices: 67214630--67214945 Score: 357
Period size: 105 Copynumber: 3.0 Consensus size: 104
67214620 TAAAAAAAAC
* * * *
67214630 AATTTTTTTGTTCTGGCCTTCTAATAGCTGGCACCAGGGACTTTTTTCGTGTCCTAATGC-AATT
1 AATTTTTTTGTTCTGGCCTTCTAATGGCCGGCACCAAGGACTTTTTT-GTGTCCCAATGCAAATT
* *
67214694 TTTTTA-TTGTTCTACACTGATGGTCAGCACCAGACCAGTAA
65 TTTTTACTT-TTCTACACTGATGGTCGGCACTAGACCAGT-A
**** * * * * *
67214735 AAAAAATTAGTTTTGGCCTTCTAATGGCCGGCACCAAAGATTTTTTTTGTGTCCCAATGCAATTT
1 AATTTTTTTGTTCTGGCCTTCTAATGGCCGGCACCAAGGA-CTTTTTTGTGTCCCAATGCAA--A
*
67214800 TTTTTTTACTTTTCTACATTGATGGTCGGCACTAGACCAGTA
63 TTTTTTTACTTTTCTACACTGATGGTCGGCACTAGACCAGTA
*
67214842 AATTTTTTTTTTTGGTTCTGGCCTTCTAATGGCCGGCACCAAGGACTTTTTTGTGCCCCAATGCA
1 AA----TTTTTTT-GTTCTGGCCTTCTAATGGCCGGCACCAAGGACTTTTTTGTGTCCCAATGCA
*
67214907 AATTATTTTACTTTTCTACACTGATGGTCGGCACTAGAC
61 AATTTTTTTACTTTTCTACACTGATGGTCGGCACTAGAC
67214946 TAGCAATTAA
Statistics
Matches: 173, Mismatches: 28, Indels: 16
0.80 0.13 0.07
Matches are distributed among these distances:
105 41 0.24
106 7 0.04
107 3 0.02
108 35 0.20
109 37 0.21
111 21 0.12
112 29 0.17
ACGTcount: A:0.22, C:0.21, G:0.18, T:0.39
Consensus pattern (104 bp):
AATTTTTTTGTTCTGGCCTTCTAATGGCCGGCACCAAGGACTTTTTTGTGTCCCAATGCAAATTT
TTTTACTTTTCTACACTGATGGTCGGCACTAGACCAGTA
Found at i:67215260 original size:27 final size:27
Alignment explanation
Indices: 67215223--67215285 Score: 92
Period size: 27 Copynumber: 2.3 Consensus size: 27
67215213 ATCATGAAAT
*
67215223 GAGTTTGTTTGTAGTGGATTGTATG-TGG
1 GAGTTT-TTTGTAGTGGATTGTA-GATGA
67215251 GAGTTTTTTGTAGTGGATTGTAGATGA
1 GAGTTTTTTGTAGTGGATTGTAGATGA
67215278 GAGTTTTT
1 GAGTTTTT
67215286 CATAGTGTAC
Statistics
Matches: 33, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
26 1 0.03
27 26 0.79
28 6 0.18
ACGTcount: A:0.17, C:0.00, G:0.35, T:0.48
Consensus pattern (27 bp):
GAGTTTTTTGTAGTGGATTGTAGATGA
Found at i:67215291 original size:27 final size:27
Alignment explanation
Indices: 67215234--67215292 Score: 75
Period size: 27 Copynumber: 2.2 Consensus size: 27
67215224 AGTTTGTTTG
* **
67215234 TAGTGGATTGTATGTGGGAGTTTTTTG
1 TAGTGGATTGTATGTGAGAGTTTTTCA
67215261 TAGTGGATTGTA-GATGAGAGTTTTTCA
1 TAGTGGATTGTATG-TGAGAGTTTTTCA
67215288 TAGTG
1 TAGTG
67215293 TACAACCAAA
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
26 1 0.04
27 27 0.96
ACGTcount: A:0.20, C:0.02, G:0.34, T:0.44
Consensus pattern (27 bp):
TAGTGGATTGTATGTGAGAGTTTTTCA
Found at i:67216002 original size:20 final size:20
Alignment explanation
Indices: 67215965--67216003 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
67215955 GTGCGTATTA
*
67215965 TTTTTGTTTGAATCTTTTAT
1 TTTTTGTTTGAATATTTTAT
67215985 TTTTTGTATT-AATATTTTA
1 TTTTTGT-TTGAATATTTTA
67216004 GAATGTTTGT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 15 0.88
21 2 0.12
ACGTcount: A:0.21, C:0.03, G:0.08, T:0.69
Consensus pattern (20 bp):
TTTTTGTTTGAATATTTTAT
Found at i:67216185 original size:20 final size:20
Alignment explanation
Indices: 67216139--67216186 Score: 53
Period size: 20 Copynumber: 2.4 Consensus size: 20
67216129 AAATTAATAT
67216139 TAAAAATAGAATAATTACAA
1 TAAAAATAGAATAATTACAA
* *
67216159 AATAAAATA-AATATTTACAGA
1 TA-AAAATAGAATAATTACA-A
67216180 TAAAAAT
1 TAAAAAT
67216187 TAAAATTGTC
Statistics
Matches: 23, Mismatches: 3, Indels: 4
0.77 0.10 0.13
Matches are distributed among these distances:
20 15 0.65
21 8 0.35
ACGTcount: A:0.65, C:0.04, G:0.04, T:0.27
Consensus pattern (20 bp):
TAAAAATAGAATAATTACAA
Found at i:67218531 original size:22 final size:22
Alignment explanation
Indices: 67218484--67218532 Score: 57
Period size: 21 Copynumber: 2.3 Consensus size: 22
67218474 GATTTCCATT
67218484 TCATTTAAATTATCTATCTTTC
1 TCATTTAAATTATCTATCTTTC
* *
67218506 -CATTTAAATTTAT-TTTTTTTC
1 TCATTTAAA-TTATCTATCTTTC
67218527 TCATTT
1 TCATTT
67218533 CAAAGTTTTT
Statistics
Matches: 23, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
21 14 0.61
22 9 0.39
ACGTcount: A:0.24, C:0.14, G:0.00, T:0.61
Consensus pattern (22 bp):
TCATTTAAATTATCTATCTTTC
Found at i:67218646 original size:28 final size:28
Alignment explanation
Indices: 67218614--67218689 Score: 84
Period size: 28 Copynumber: 2.7 Consensus size: 28
67218604 TTCATAATCA
*
67218614 TCATTTCATTTTATATTCATGTA-ACATT
1 TCATTTCATTTTATATTCAT-TACAAATT
* *
67218642 TCATTTAATTTCATATTCATTACAAATT
1 TCATTTCATTTTATATTCATTACAAATT
*
67218670 ACATTTC-TTTTCATATTCAT
1 TCATTTCATTTT-ATATTCAT
67218690 ATTTCATTTA
Statistics
Matches: 40, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
27 5 0.12
28 35 0.88
ACGTcount: A:0.30, C:0.16, G:0.01, T:0.53
Consensus pattern (28 bp):
TCATTTCATTTTATATTCATTACAAATT
Found at i:67218745 original size:21 final size:20
Alignment explanation
Indices: 67218703--67218745 Score: 50
Period size: 21 Copynumber: 2.1 Consensus size: 20
67218693 TCATTTAACA
**
67218703 TTTCATTTAATTAATTTTTT
1 TTTCATTTAATTAATTACTT
*
67218723 TTTCATTTAAATTTATTACTT
1 TTTCATTT-AATTAATTACTT
67218744 TT
1 TT
67218746 CCTAATATAA
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
20 8 0.42
21 11 0.58
ACGTcount: A:0.26, C:0.07, G:0.00, T:0.67
Consensus pattern (20 bp):
TTTCATTTAATTAATTACTT
Found at i:67219200 original size:49 final size:49
Alignment explanation
Indices: 67219137--67219266 Score: 210
Period size: 49 Copynumber: 2.7 Consensus size: 49
67219127 ATATTTTTTC
* *
67219137 AATTTAATTTTTTTTCTCATTTCATTTATATTATCTATTTTTCCATGCA
1 AATTTAATTTTTTTTCTCATTTCATTTAAATTATCTATCTTTCCATGCA
*
67219186 AATTTAATTTTTTTTCTCATTTCATTTAAATCATCTATCTTTCCATGCA
1 AATTTAATTTTTTTTCTCATTTCATTTAAATTATCTATCTTTCCATGCA
67219235 AA-TTAATTTTTTTTCTCAATTT-ATTTAAATTA
1 AATTTAATTTTTTTTCTC-ATTTCATTTAAATTA
67219267 AATTTTTTTT
Statistics
Matches: 76, Mismatches: 4, Indels: 3
0.92 0.05 0.04
Matches are distributed among these distances:
48 24 0.32
49 52 0.68
ACGTcount: A:0.28, C:0.14, G:0.02, T:0.57
Consensus pattern (49 bp):
AATTTAATTTTTTTTCTCATTTCATTTAAATTATCTATCTTTCCATGCA
Found at i:67219273 original size:76 final size:74
Alignment explanation
Indices: 67219189--67219680 Score: 498
Period size: 76 Copynumber: 6.5 Consensus size: 74
67219179 CCATGCAAAT
* * * **
67219189 TTAATTTTTTTTCTCATTTCATTTAAATCATCTATCTTTCCATGCAAATTAATTTTTTTTCTCAA
1 TTAATTTTTTTTCTCATTTCATTTAAATTATCTTTCTTTCAATTTAAATTAA-TTTTTTTCTC-A
67219254 TTT-ATTTAAA
64 TTTCATTTAAA
*
67219264 TTAAATTTTTTTTCTCATTTCATTTAAATTTATCTTTCTTTCAATTTTAATTTAATTTTTTTCTC
1 TT-AATTTTTTTTCTCATTTCATTTAAA-TTATCTTTCTTTCAA-TTTAAATTAATTTTTTTCTC
* *
67219329 ATTTCTTTTGAA
63 ATTTCATTTAAA
* * *
67219341 TTAATTTTTTTCCTCATTTCAATTAAATTTATCTTTCTTTCAATTTTAATATAA-TTTTTTCTCA
1 TTAATTTTTTTTCTCATTTCATTTAAA-TTATCTTTCTTTCAATTTAAAT-TAATTTTTTTCTCA
67219405 GTTT-ATTTAAA
64 -TTTCATTTAAA
* * *
67219416 TTAATTTTTTTCCTCATTTCATTTCAATTTATCTTTCTTTCAATTTTAATTTTAA-TTTTTTCTC
1 TTAATTTTTTTTCTCATTTCATTT-AAATTATCTTTCTTTCAA-TTTAA-ATTAATTTTTTTCTC
*
67219480 ATTTCTTTTAAA
63 ATTTCATTTAAA
** * * *
67219492 TTAA-AATTTTTCTTCATTTCATTTAAATTTATCTTTCTTTCAATTTTAATTCAAATTTTGTCTC
1 TTAATTTTTTTTC-TCATTTCATTTAAA-TTATCTTTCTTTCAATTTAAATT-AATTTTTTTCTC
*
67219556 ATTTCTTTTAAA
63 ATTTCATTTAAA
* * * * *
67219568 TTAATTTTTTTCCTCATTTCATTTAAAATTTTCTTTCTTTC-CTTGTAAATTTAAATTTTTCCTC
1 TTAATTTTTTTTCTCATTTCATTT-AAATTATCTTTCTTTCAATT-TAAA-TTAATTTTTTTCTC
* * *
67219632 AATTCACTTATA
63 ATTTCATTTAAA
*
67219644 TT-A-TTTTTTT-TCATTTCATTTAAATTATCTATCTTTC
1 TTAATTTTTTTTCTCATTTCATTTAAATTATCTTTCTTTC
67219681 CATGTAATTT
Statistics
Matches: 358, Mismatches: 41, Indels: 39
0.82 0.09 0.09
Matches are distributed among these distances:
72 14 0.04
73 11 0.03
74 8 0.02
75 79 0.22
76 199 0.56
77 40 0.11
78 7 0.02
ACGTcount: A:0.25, C:0.14, G:0.01, T:0.60
Consensus pattern (74 bp):
TTAATTTTTTTTCTCATTTCATTTAAATTATCTTTCTTTCAATTTAAATTAATTTTTTTCTCATT
TCATTTAAA
Found at i:67219279 original size:28 final size:27
Alignment explanation
Indices: 67219234--67219670 Score: 192
Period size: 27 Copynumber: 17.2 Consensus size: 27
67219224 CTTTCCATGC
67219234 AAATTAATTTTTTTTCTCAATTT-ATTT
1 AAATTAATTTTTTTTCTC-ATTTCATTT
67219261 AAATTAAATTTTTTTTCTCATTTCATTT
1 AAATT-AATTTTTTTTCTCATTTCATTT
* * * *
67219289 AAATTTATCTTTCTT-TCA-AT--TTT
1 AAATTAATTTTTTTTCTCATTTCATTT
* *
67219312 AATTTAA-TTTTTTTCTCATTTCTTTT
1 AAATTAATTTTTTTTCTCATTTCATTT
* * *
67219338 GAATTAATTTTTTTCCTCATTTCAATT
1 AAATTAATTTTTTTTCTCATTTCATTT
* * *
67219365 AAATTTATCTTTCTT-TCA----ATTT
1 AAATTAATTTTTTTTCTCATTTCATTT
*
67219387 TAATATAA--TTTTTTCTCAGTTT-ATTT
1 AAAT-TAATTTTTTTTCTCA-TTTCATTT
*
67219413 AAATTAATTTTTTTCCTCATTTCATTT
1 AAATTAATTTTTTTTCTCATTTCATTT
* * * * *
67219440 CAATTTATCTTTCTT-TCA-AT--TTT
1 AAATTAATTTTTTTTCTCATTTCATTT
* *
67219463 AATTTTAA--TTTTTTCTCATTTCTTTT
1 AA-ATTAATTTTTTTTCTCATTTCATTT
**
67219489 AAATTAA-AATTTTTCTTCATTTCATTT
1 AAATTAATTTTTTTTC-TCATTTCATTT
* * *
67219516 AAATTTATCTTTCTT-TCA----ATTT
1 AAATTAATTTTTTTTCTCATTTCATTT
* * * *
67219538 TAATTCAA-ATTTTGTCTCATTTCTTTT
1 AAATT-AATTTTTTTTCTCATTTCATTT
*
67219565 AAATTAATTTTTTTCCTCATTTCATTT
1 AAATTAATTTTTTTTCTCATTTCATTT
* *
67219592 -AA--AA-TTTTCTT-TC-TTTCCTTGT
1 AAATTAATTTTTTTTCTCATTTCATT-T
* * * *
67219614 AAATTTAA-ATTTTTCCTCAATTCACTT
1 AAA-TTAATTTTTTTTCTCATTTCATTT
*
67219641 ATATT-A-TTTTTTT-TCATTTCATTT
1 AAATTAATTTTTTTTCTCATTTCATTT
67219665 AAATTA
1 AAATTA
67219671 TCTATCTTTC
Statistics
Matches: 302, Mismatches: 69, Indels: 80
0.67 0.15 0.18
Matches are distributed among these distances:
21 11 0.04
22 34 0.11
23 31 0.10
24 20 0.07
25 15 0.05
26 53 0.18
27 108 0.36
28 30 0.10
ACGTcount: A:0.26, C:0.13, G:0.01, T:0.60
Consensus pattern (27 bp):
AAATTAATTTTTTTTCTCATTTCATTT
Found at i:67219358 original size:152 final size:148
Alignment explanation
Indices: 67219189--67219689 Score: 579
Period size: 151 Copynumber: 3.3 Consensus size: 148
67219179 CCATGCAAAT
* * * **
67219189 TTAATTTTTTTTCTCATTTCATTTAAA-TCATCTATCTTTCCATGCAAATTAATTTTTTTTCTCA
1 TTAATTTTTTTCCTCATTTCATTTAAATTTATCTATCTTTCAATGTTAATTAA--TTTTTTCTCA
*
67219253 ATTTATTTAAATTAAATTTTTTTTCTCATTTCATTTAAATTTATCTTTCTTTCAATTTTAATTTA
64 ATTTATTTAAATT-AATTTTTTTCCTCATTTCATTTAAATTTATCTTTCTTTCAATTTTAATTTA
67219318 ATTTTTTTCTCATTTCTTTTGAA
128 A-TTTTTTCTCATTTCTTTT-AA
* * * *
67219341 TTAATTTTTTTCCTCATTTCAATTAAATTTATCTTTCTTTCAATTTTAATATAATTTTTTCTCAG
1 TTAATTTTTTTCCTCATTTCATTTAAATTTATCTATCTTTCAATGTTAAT-TAATTTTTTCTCAA
*
67219406 TTTATTTAAATTAATTTTTTTCCTCATTTCATTTCAATTTATCTTTCTTTCAATTTTAATTTTAA
65 TTTATTTAAATTAATTTTTTTCCTCATTTCATTTAAATTTATCTTTCTTTCAATTTTAA-TTTAA
67219471 TTTTTTCTCATTTCTTTTAAA
129 TTTTTTCTCATTTCTTTT-AA
** * * * *
67219492 TTAAAATTTTTCTTCATTTCATTTAAATTTATCTTTCTTTCAATTTTAATTCAAATTTTGTCTC-
1 TTAATTTTTTTCCTCATTTCATTTAAATTTATCTATCTTTCAATGTTAATT--AATTTTTTCTCA
* * *
67219556 ATTTCTTTTAAATTAATTTTTTTCCTCATTTCATTTAAAATTT-TCTTTCTTTC-CTTGTAAATT
64 ATTT-ATTTAAATTAATTTTTTTCCTCATTTCATTT-AAATTTATCTTTCTTTCAATT-TTAATT
* * **
67219619 TAAATTTTTCCTCAATTCACTTATA
126 T-AATTTTTTCTCATTTCTTTTA-A
*
67219644 TT-ATTTTTTT--TCATTTCATTTAAA-TTATCTATCTTTCCATG-TAATT
1 TTAATTTTTTTCCTCATTTCATTTAAATTTATCTATCTTTCAATGTTAATT
67219690 TTCATTTTCT
Statistics
Matches: 308, Mismatches: 31, Indels: 25
0.85 0.09 0.07
Matches are distributed among these distances:
147 5 0.02
148 14 0.05
149 14 0.05
150 1 0.00
151 126 0.41
152 124 0.40
153 21 0.07
154 3 0.01
ACGTcount: A:0.26, C:0.14, G:0.01, T:0.59
Consensus pattern (148 bp):
TTAATTTTTTTCCTCATTTCATTTAAATTTATCTATCTTTCAATGTTAATTAATTTTTTCTCAAT
TTATTTAAATTAATTTTTTTCCTCATTTCATTTAAATTTATCTTTCTTTCAATTTTAATTTAATT
TTTTCTCATTTCTTTTAA
Found at i:67219532 original size:21 final size:22
Alignment explanation
Indices: 67219490--67219542 Score: 56
Period size: 21 Copynumber: 2.5 Consensus size: 22
67219480 ATTTCTTTTA
* *
67219490 AATTAAAATTTTTCTTCATTTC
1 AATTTAAATTTATCTTCATTTC
67219512 -ATTTAAATTTATCTTTC-TTTC
1 AATTTAAATTTATC-TTCATTTC
*
67219533 AATTTTAATT
1 AATTTAAATT
67219543 CAAATTTTGT
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
21 15 0.58
22 11 0.42
ACGTcount: A:0.30, C:0.11, G:0.00, T:0.58
Consensus pattern (22 bp):
AATTTAAATTTATCTTCATTTC
Found at i:67219537 original size:22 final size:23
Alignment explanation
Indices: 67219481--67219542 Score: 58
Period size: 22 Copynumber: 2.8 Consensus size: 23
67219471 TTTTTTCTCA
* * * *
67219481 TTTCTTTTAAATTAAAATTTTTC
1 TTTCATTTCAATTTAAATTTATC
67219504 -TTCATTTC-ATTTAAATTTATC
1 TTTCATTTCAATTTAAATTTATC
*
67219525 TTTC-TTTCAATTTTAATT
1 TTTCATTTCAATTTAAATT
67219543 CAAATTTTGT
Statistics
Matches: 32, Mismatches: 5, Indels: 5
0.76 0.12 0.12
Matches are distributed among these distances:
21 15 0.47
22 17 0.53
ACGTcount: A:0.27, C:0.11, G:0.00, T:0.61
Consensus pattern (23 bp):
TTTCATTTCAATTTAAATTTATC
Found at i:67222779 original size:109 final size:109
Alignment explanation
Indices: 67222648--67223362 Score: 782
Period size: 114 Copynumber: 6.4 Consensus size: 109
67222638 AGAATGAAAA
* *
67222648 ATTGGAACACGAAAAAATTCCCTAGTGCCGGCCATTAGAAGGCCAGAACCAAAATTTTTTT-TTA
1 ATTGGGACACGAAAAAAGTCCCTAGTGCCGGCCATTAGAAGGCCAGAA-C-AAATTTTTTTATTA
* * * **
67222712 CTGGTCTGGTGCCGGCAATCAGTGTAGAAAAGT-AAAAAAATTTAA
64 TTGGTCTGGTGCTGGCCATCAGTGTAGAAAAGTAAAAAAAATTTGC
* * * *
67222757 ATTGGGACACGAAAAAAGTCCCTGGTGCCGGCTATTAGAAGGCCAAAACCAATTTTTTTTTGAAA
1 ATTGGGACACGAAAAAAGTCCCTAGTGCCGGCCATTAGAAGGCCAGAA-CAA-ATTTTTTT----
* * *
67222822 AATTACTGGTCTAGTGCTGGCCATCAGTGTAGAAAAGTAAAAAAAAATTGC
60 -ATTATTGGTCTGGTGCTGGCCATCAGTGTAGAAAAGTAAAAAAAATTTGC
* * * *
67222873 ATTGGGAAACGAAAAAAGTCCCTAGTGCCGACCATTAAAAGGCCAAGAACGAATTTTTTTTAAAA
1 ATTGGGACACGAAAAAAGTCCCTAGTGCCGGCCATTAGAAGGCC-AGAAC-AAATTTTTTT---A
* * *
67222938 TTATTGGTTTGGTGCTGACCATCAGTGTAGAAAAGTAAAAAAAAATTGC
61 TTATTGGTCTGGTGCTGGCCATCAGTGTAGAAAAGTAAAAAAAATTTGC
* * * *
67222987 ATTGGGAAACGAAAAAAGTCCCTAGTGCCGACCATTAAAAGGCCAAGAACGAATTTTTTTTAAAA
1 ATTGGGACACGAAAAAAGTCCCTAGTGCCGGCCATTAGAAGGCC-AGAAC-AAATTTTTTT---A
* *
67223052 TTATTGGTTTGGTGCTGACCATCAGTGTAGAAAAGTAAAAAAAAATTTGC
61 TTATTGGTCTGGTGCTGGCCATCAGTGTAGAAAAGT-AAAAAAAATTTGC
* * * *
67223102 ATTGGGACACGAAAAAAGTCCTTGGTGCCGGCCATTAAAAGGCTAGAACCAAA-TTTTTT-TTAT
1 ATTGGGACACGAAAAAAGTCCCTAGTGCCGGCCATTAGAAGGCCAGAA-CAAATTTTTTTATTAT
* * *
67223165 TGGTTTGGTG-TCGGCCATTAGTGTAGAAAAGTAAAAATAATTTGC
65 TGGTCTGGTGCT-GGCCATCAGTGTAGAAAAGTAAAAAAAATTTGC
* * * * *
67223210 ATTGGGAAACAAAAAAAGTCCCTGGTGCCAGCCATTAGAAGGCTAGAACAAA-TTTTTT-TTA-T
1 ATTGGGACACGAAAAAAGTCCCTAGTGCCGGCCATTAGAAGGCCAGAACAAATTTTTTTATTATT
* *
67223272 GGTCTGGTGTTGGCCATCAGTGTAGAAAAGT-AAAAAATTTTGC
66 GGTCTGGTGCTGGCCATCAGTGTAGAAAAGTAAAAAAAATTTGC
* *
67223315 ATTGGGACACGAAAAAAGTCCCTAGTGCCGACCATTAGAAGGCTAGAA
1 ATTGGGACACGAAAAAAGTCCCTAGTGCCGGCCATTAGAAGGCCAGAA
67223363 TAAAAAAAAA
Statistics
Matches: 546, Mismatches: 46, Indels: 32
0.88 0.07 0.05
Matches are distributed among these distances:
105 53 0.10
106 28 0.05
107 14 0.03
108 58 0.11
109 84 0.15
113 6 0.01
114 156 0.29
115 85 0.16
116 57 0.10
117 5 0.01
ACGTcount: A:0.37, C:0.15, G:0.22, T:0.27
Consensus pattern (109 bp):
ATTGGGACACGAAAAAAGTCCCTAGTGCCGGCCATTAGAAGGCCAGAACAAATTTTTTTATTATT
GGTCTGGTGCTGGCCATCAGTGTAGAAAAGTAAAAAAAATTTGC
Found at i:67231828 original size:23 final size:24
Alignment explanation
Indices: 67231787--67231840 Score: 65
Period size: 23 Copynumber: 2.2 Consensus size: 24
67231777 AAAAAAAAAT
*
67231787 CTATTGTTTTGTTATTGTTTTGCTG
1 CTATT-TTTTGTTACTGTTTTGCTG
*
67231812 CTATTTTTT-TTACTGTTTTGTTG
1 CTATTTTTTGTTACTGTTTTGCTG
*
67231835 TTATTT
1 CTATTT
67231841 CACAATTATG
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
23 17 0.65
24 4 0.15
25 5 0.19
ACGTcount: A:0.09, C:0.07, G:0.15, T:0.69
Consensus pattern (24 bp):
CTATTTTTTGTTACTGTTTTGCTG
Found at i:67232666 original size:23 final size:22
Alignment explanation
Indices: 67232640--67232682 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
67232630 AATTCTTATG
67232640 AATTTTAAACTTTAGATTTTTTT
1 AATTTTAAA-TTTAGATTTTTTT
* *
67232663 AATTTTTAATTTATATTTTT
1 AATTTTAAATTTAGATTTTT
67232683 AAAAATTAAC
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 10 0.56
23 8 0.44
ACGTcount: A:0.30, C:0.02, G:0.02, T:0.65
Consensus pattern (22 bp):
AATTTTAAATTTAGATTTTTTT
Found at i:67240867 original size:19 final size:21
Alignment explanation
Indices: 67240833--67240873 Score: 59
Period size: 19 Copynumber: 2.0 Consensus size: 21
67240823 ATTGGATGGA
67240833 TCAGCTCTTACGAGCTTCTGT
1 TCAGCTCTTACGAGCTTCTGT
*
67240854 TCAGCT-TT-CGAGCTTTTGT
1 TCAGCTCTTACGAGCTTCTGT
67240873 T
1 T
67240874 GGCATATTCG
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
19 11 0.58
20 2 0.11
21 6 0.32
ACGTcount: A:0.12, C:0.24, G:0.20, T:0.44
Consensus pattern (21 bp):
TCAGCTCTTACGAGCTTCTGT
Found at i:67245340 original size:43 final size:44
Alignment explanation
Indices: 67245279--67245373 Score: 115
Period size: 43 Copynumber: 2.2 Consensus size: 44
67245269 AATGCCAACA
* * *
67245279 TCCCAGAC-GTGGTCTTACATGTAAT-TCAGTATCGAAGCCTCTG
1 TCCCAGACAGTGGTCTTACACGAAATCTCA-AATCGAAGCCTCTG
* *
67245322 TCCCAGACAG-GGTCTTACACGAAATCTCAAATCGAGGCCTGTG
1 TCCCAGACAGTGGTCTTACACGAAATCTCAAATCGAAGCCTCTG
67245365 TCCCAGACA
1 TCCCAGACA
67245374 CGGTATTGCA
Statistics
Matches: 45, Mismatches: 5, Indels: 4
0.83 0.09 0.07
Matches are distributed among these distances:
43 41 0.91
44 4 0.09
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.24
Consensus pattern (44 bp):
TCCCAGACAGTGGTCTTACACGAAATCTCAAATCGAAGCCTCTG
Found at i:67251168 original size:31 final size:31
Alignment explanation
Indices: 67251125--67251194 Score: 122
Period size: 31 Copynumber: 2.3 Consensus size: 31
67251115 GATGATGCTT
*
67251125 TAATAAGTAAGACAAAAAAAGATTTAGACTC
1 TAATGAGTAAGACAAAAAAAGATTTAGACTC
*
67251156 TAATGAGTAAGACAAAAAATGATTTAGACTC
1 TAATGAGTAAGACAAAAAAAGATTTAGACTC
67251187 TAATGAGT
1 TAATGAGT
67251195 CTTCACTGAG
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
31 37 1.00
ACGTcount: A:0.50, C:0.09, G:0.16, T:0.26
Consensus pattern (31 bp):
TAATGAGTAAGACAAAAAAAGATTTAGACTC
Found at i:67254814 original size:5 final size:5
Alignment explanation
Indices: 67254804--67254884 Score: 55
Period size: 5 Copynumber: 16.0 Consensus size: 5
67254794 CCCTTTCCAT
* *
67254804 TTTTA TTTTA TTTTA TTTTA TCCTTA TTATTA TTTT- TCTTTC TTTCT-
1 TTTTA TTTTA TTTTA TTTTA T-TTTA TT-TTA TTTTA T-TTTA TTT-TA
67254851 TTCTT- TTTTA TTTTA TTATTA -TTT- TTTTA TTTTA
1 TT-TTA TTTTA TTTTA TT-TTA TTTTA TTTTA TTTTA
67254885 AAGTATTATT
Statistics
Matches: 64, Mismatches: 2, Indels: 20
0.74 0.02 0.23
Matches are distributed among these distances:
4 8 0.12
5 41 0.64
6 15 0.23
ACGTcount: A:0.16, C:0.07, G:0.00, T:0.77
Consensus pattern (5 bp):
TTTTA
Found at i:67254891 original size:21 final size:19
Alignment explanation
Indices: 67254854--67254897 Score: 61
Period size: 19 Copynumber: 2.2 Consensus size: 19
67254844 TCTTTCTTTC
*
67254854 TTTTTTATTTTATTATTAT
1 TTTTTTATTTTAGTATTAT
67254873 TTTTTTATTTTAAAGTATTAT
1 TTTTTTATTTT--AGTATTAT
67254894 TTTT
1 TTTT
67254898 ACTAATTTTT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 11 0.50
21 11 0.50
ACGTcount: A:0.23, C:0.00, G:0.02, T:0.75
Consensus pattern (19 bp):
TTTTTTATTTTAGTATTAT
Found at i:67257424 original size:45 final size:44
Alignment explanation
Indices: 67257334--67257464 Score: 165
Period size: 45 Copynumber: 3.0 Consensus size: 44
67257324 CCAAATTTAT
* * * *
67257334 TCACCGGCATT-TTGCCTGCTAGGCTCGAGGCCCGAAAAATATC
1 TCACCAGCATTATAGCCTGCTAGGCTCAAGGCCCGAATAATATC
** * *
67257377 TCACTGGCATTATAGCTTGCTAGGCTCAAAGGCCCGAATAATGTC
1 TCACCAGCATTATAGCCTGCTAGGCTC-AAGGCCCGAATAATATC
67257422 TCACCAGCATTATAGCCTGCTAGGCTCCAAGGCCCGAATAATA
1 TCACCAGCATTATAGCCTGCTAGGCT-CAAGGCCCGAATAATA
67257465 CTGTACAACA
Statistics
Matches: 75, Mismatches: 10, Indels: 4
0.84 0.11 0.04
Matches are distributed among these distances:
43 10 0.13
44 13 0.17
45 51 0.68
46 1 0.01
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (44 bp):
TCACCAGCATTATAGCCTGCTAGGCTCAAGGCCCGAATAATATC
Found at i:67265066 original size:31 final size:35
Alignment explanation
Indices: 67265028--67265104 Score: 90
Period size: 36 Copynumber: 2.3 Consensus size: 35
67265018 AGGATCATTG
*
67265028 ATTTTATTTGTTT-TCTTTTT-GAT-TT-TATTTT
1 ATTTTATTTATTTCTCTTTTTAGATGTTCTATTTT
*
67265059 ATTTTATTTTATTTCTCTTTTTAGTTGTTCTATTTT
1 ATTTTA-TTTATTTCTCTTTTTAGATGTTCTATTTT
67265095 ATTTTTATTT
1 A-TTTTATTT
67265105 TCTTGTACTT
Statistics
Matches: 38, Mismatches: 2, Indels: 7
0.81 0.04 0.15
Matches are distributed among these distances:
31 6 0.16
32 6 0.16
33 7 0.18
34 2 0.05
35 2 0.05
36 10 0.26
37 5 0.13
ACGTcount: A:0.14, C:0.05, G:0.05, T:0.75
Consensus pattern (35 bp):
ATTTTATTTATTTCTCTTTTTAGATGTTCTATTTT
Found at i:67273521 original size:47 final size:47
Alignment explanation
Indices: 67273448--67273541 Score: 179
Period size: 47 Copynumber: 2.0 Consensus size: 47
67273438 ACAACCAAAG
67273448 ACGTATGGCATCATCAGAAACACCATTGATTTTAAATGTATCGCATA
1 ACGTATGGCATCATCAGAAACACCATTGATTTTAAATGTATCGCATA
*
67273495 ACGTATGGCATCATCAGAAACGCCATTGATTTTAAATGTATCGCATA
1 ACGTATGGCATCATCAGAAACACCATTGATTTTAAATGTATCGCATA
67273542 GTTCCAAGAA
Statistics
Matches: 46, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
47 46 1.00
ACGTcount: A:0.35, C:0.19, G:0.16, T:0.30
Consensus pattern (47 bp):
ACGTATGGCATCATCAGAAACACCATTGATTTTAAATGTATCGCATA
Found at i:67282440 original size:41 final size:40
Alignment explanation
Indices: 67282326--67282474 Score: 133
Period size: 41 Copynumber: 3.7 Consensus size: 40
67282316 AATACTCGAT
* * * * *
67282326 ATCTCGCACACTAAGTGCCAAAACATATCGAAGGTATTATA
1 ATCTCACACACTAAGTGCC-ATATATATCGAAGCTATTACA
* *
67282367 ATCTCGCACACTAAGTGCC-TTTCATAGTCGAAGCTATCT-CA
1 ATCTCACACACTAAGTGCCATAT-ATA-TCGAAGCTAT-TACA
* *
67282408 ATCTCACACACTAAGTGCCATATATATCCGAAGTTATTCCA
1 ATCTCACACACTAAGTGCCATATATAT-CGAAGCTATTACA
* *
67282449 ATAT-ACACACTAAGTGCTATATATAT
1 ATCTCACACACTAAGTGCCATATATAT
67282475 AGCTGAAGCT
Statistics
Matches: 92, Mismatches: 10, Indels: 13
0.80 0.09 0.11
Matches are distributed among these distances:
40 26 0.28
41 63 0.68
42 3 0.03
ACGTcount: A:0.35, C:0.24, G:0.12, T:0.29
Consensus pattern (40 bp):
ATCTCACACACTAAGTGCCATATATATCGAAGCTATTACA
Found at i:67285508 original size:35 final size:35
Alignment explanation
Indices: 67285469--67285539 Score: 124
Period size: 35 Copynumber: 2.0 Consensus size: 35
67285459 AAAATGAATG
67285469 TTGTAAAAATCTTAGTTTTGAGGTTTTTGAATCTT
1 TTGTAAAAATCTTAGTTTTGAGGTTTTTGAATCTT
* *
67285504 TTGTAAAAATCTTGGTTTTGAGGTTTTTGTATCTT
1 TTGTAAAAATCTTAGTTTTGAGGTTTTTGAATCTT
67285539 T
1 T
67285540 CATAGAAATT
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
35 34 1.00
ACGTcount: A:0.23, C:0.06, G:0.18, T:0.54
Consensus pattern (35 bp):
TTGTAAAAATCTTAGTTTTGAGGTTTTTGAATCTT
Found at i:67291782 original size:30 final size:30
Alignment explanation
Indices: 67291747--67291846 Score: 139
Period size: 30 Copynumber: 3.3 Consensus size: 30
67291737 ACACCCATGA
67291747 GCTGACCAACACCAGGATTGCTGATGTGTT
1 GCTGACCAACACCAGGATTGCTGATGTGTT
* * * *
67291777 GCTGACCAACTCCGGGATAGCTAAT-TAGTT
1 GCTGACCAACACCAGGATTGCTGATGT-GTT
*
67291807 GCTGACCAACACCAGGATTGTTGATGTGTT
1 GCTGACCAACACCAGGATTGCTGATGTGTT
67291837 GCTGACCAAC
1 GCTGACCAAC
67291847 TCCGGGATGG
Statistics
Matches: 59, Mismatches: 9, Indels: 4
0.82 0.12 0.06
Matches are distributed among these distances:
29 1 0.02
30 57 0.97
31 1 0.02
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (30 bp):
GCTGACCAACACCAGGATTGCTGATGTGTT
Found at i:67296475 original size:29 final size:31
Alignment explanation
Indices: 67296426--67296484 Score: 70
Period size: 29 Copynumber: 2.0 Consensus size: 31
67296416 AATGTGTATC
* *
67296426 TATTTATTTGATGGATGAAAT-T-GAGATAG
1 TATTTATTTAATAGATGAAATGTGGAGATAG
67296455 TATTTATTCTAATAGAT-AAATGTGGAGATA
1 TATTTATT-TAATAGATGAAATGTGGAGATA
67296485 TTAAATTTAA
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
29 12 0.48
30 7 0.28
31 6 0.24
ACGTcount: A:0.37, C:0.02, G:0.20, T:0.41
Consensus pattern (31 bp):
TATTTATTTAATAGATGAAATGTGGAGATAG
Found at i:67308241 original size:27 final size:26
Alignment explanation
Indices: 67308193--67308244 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
67308183 GCGAGGCTGC
*
67308193 CAGATATTGTGACGAAGTCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
* *
67308219 CAGATATATGTGGCGAGGCCACCAGA
1 CAGATAT-TGTGACGAAGCCACCAGA
67308245 TTGCAGCGAG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.35, C:0.21, G:0.27, T:0.17
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:67315709 original size:27 final size:26
Alignment explanation
Indices: 67315661--67315712 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
67315651 GCGAGGCTGC
*
67315661 CAGATATTGTGACGAAGTCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
* *
67315687 CAGATATATGTGGCGAGGCCACCAGA
1 CAGATAT-TGTGACGAAGCCACCAGA
67315713 TTACAGTGAG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.35, C:0.21, G:0.27, T:0.17
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:67319290 original size:14 final size:14
Alignment explanation
Indices: 67319273--67319303 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
67319263 CTGTTATTTA
*
67319273 TTATTTTTATGTTT
1 TTATTTTTATCTTT
67319287 TTATTTTTATCTTT
1 TTATTTTTATCTTT
67319301 TTA
1 TTA
67319304 AAACTATTTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.16, C:0.03, G:0.03, T:0.77
Consensus pattern (14 bp):
TTATTTTTATCTTT
Found at i:67321301 original size:13 final size:13
Alignment explanation
Indices: 67321283--67321314 Score: 64
Period size: 13 Copynumber: 2.5 Consensus size: 13
67321273 CCCGTGTCCA
67321283 TTCACACAGGTAG
1 TTCACACAGGTAG
67321296 TTCACACAGGTAG
1 TTCACACAGGTAG
67321309 TTCACA
1 TTCACA
67321315 TGTTGGATTG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.31, C:0.25, G:0.19, T:0.25
Consensus pattern (13 bp):
TTCACACAGGTAG
Found at i:67325457 original size:40 final size:40
Alignment explanation
Indices: 67325411--67325496 Score: 109
Period size: 40 Copynumber: 2.1 Consensus size: 40
67325401 GAATTATGGG
** *
67325411 TACTGAATATTGTTTTGAATACCGAATTGAACTGTGAAAT
1 TACTGAATATTGTTACGAATACCGAATTGAACTGTAAAAT
* * *
67325451 TACTGAATATTGTTACGTATACTGCATTGAACTGTAAAAT
1 TACTGAATATTGTTACGAATACCGAATTGAACTGTAAAAT
*
67325491 TTCTGA
1 TACTGA
67325497 TGAAACTAAT
Statistics
Matches: 39, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
40 39 1.00
ACGTcount: A:0.34, C:0.12, G:0.16, T:0.38
Consensus pattern (40 bp):
TACTGAATATTGTTACGAATACCGAATTGAACTGTAAAAT
Done.