Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr9
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 91122320
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2661692 characters in sequence are not A, C, G, or T
File 207 of 279
Found at i:67601885 original size:3 final size:3
Alignment explanation
Indices: 67601877--67601906 Score: 60
Period size: 3 Copynumber: 10.0 Consensus size: 3
67601867 TTCAAGCTTT
67601877 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA
1 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA
67601907 AGTAATAAAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.67, C:0.00, G:0.33, T:0.00
Consensus pattern (3 bp):
GAA
Found at i:67602271 original size:8 final size:8
Alignment explanation
Indices: 67602258--67602284 Score: 54
Period size: 8 Copynumber: 3.4 Consensus size: 8
67602248 GTTTGGAGCA
67602258 AAAAAAAT
1 AAAAAAAT
67602266 AAAAAAAT
1 AAAAAAAT
67602274 AAAAAAAT
1 AAAAAAAT
67602282 AAA
1 AAA
67602285 TTAAATTTAC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 19 1.00
ACGTcount: A:0.89, C:0.00, G:0.00, T:0.11
Consensus pattern (8 bp):
AAAAAAAT
Found at i:67608415 original size:13 final size:13
Alignment explanation
Indices: 67608397--67608426 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
67608387 ATGCCATTCT
*
67608397 TTTTAATTTTATA
1 TTTTAATTATATA
67608410 TTTTAATTATATA
1 TTTTAATTATATA
67608423 TTTT
1 TTTT
67608427 TTAATTTTAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (13 bp):
TTTTAATTATATA
Found at i:67608430 original size:15 final size:13
Alignment explanation
Indices: 67608396--67608435 Score: 53
Period size: 15 Copynumber: 2.9 Consensus size: 13
67608386 AATGCCATTC
67608396 TTTTTAATTTTAT
1 TTTTTAATTTTAT
*
67608409 ATTTTAATTATATAT
1 TTTTTAATT-T-TAT
67608424 TTTTTAATTTTA
1 TTTTTAATTTTA
67608436 ATTAAATCTT
Statistics
Matches: 23, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
13 10 0.43
14 2 0.09
15 11 0.48
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (13 bp):
TTTTTAATTTTAT
Found at i:67609163 original size:20 final size:20
Alignment explanation
Indices: 67609124--67609165 Score: 66
Period size: 20 Copynumber: 2.1 Consensus size: 20
67609114 ATGTTAGAGT
*
67609124 TAATATAGTCAAAGCAGTTG
1 TAATATAGTCAAAACAGTTG
*
67609144 TAATATAGTCAAAACCGTTG
1 TAATATAGTCAAAACAGTTG
67609164 TA
1 TA
67609166 CCGTTGTAAG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.40, C:0.12, G:0.17, T:0.31
Consensus pattern (20 bp):
TAATATAGTCAAAACAGTTG
Found at i:67611032 original size:20 final size:20
Alignment explanation
Indices: 67610971--67611023 Score: 106
Period size: 20 Copynumber: 2.6 Consensus size: 20
67610961 ATGTTAGAGT
67610971 TAATATAGTCAAAGCAGTTG
1 TAATATAGTCAAAGCAGTTG
67610991 TAATATAGTCAAAGCAGTTG
1 TAATATAGTCAAAGCAGTTG
67611011 TAATATAGTCAAA
1 TAATATAGTCAAA
67611024 ACCGTTGTAC
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 33 1.00
ACGTcount: A:0.43, C:0.09, G:0.17, T:0.30
Consensus pattern (20 bp):
TAATATAGTCAAAGCAGTTG
Found at i:67613387 original size:31 final size:31
Alignment explanation
Indices: 67613352--67613412 Score: 77
Period size: 31 Copynumber: 2.0 Consensus size: 31
67613342 ATATAAAGAA
*
67613352 CAAATCATTATAAAAATATTCAAATGAAGGC
1 CAAATCATTATAAAAATATTCAAATAAAGGC
** * *
67613383 CAAATTTTTATGAAAATATTTAAATAAAGG
1 CAAATCATTATAAAAATATTCAAATAAAGG
67613413 TTTTTCTATA
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
31 25 1.00
ACGTcount: A:0.51, C:0.08, G:0.10, T:0.31
Consensus pattern (31 bp):
CAAATCATTATAAAAATATTCAAATAAAGGC
Found at i:67618543 original size:33 final size:34
Alignment explanation
Indices: 67618506--67618602 Score: 87
Period size: 33 Copynumber: 2.9 Consensus size: 34
67618496 AAGGTTATAT
67618506 TTAAATATTTAAAATATAATTTATATATT-TTAA
1 TTAAATATTTAAAATATAATTTATATATTCTTAA
* *
67618539 TTAAAT-TTTATAA-ATAATTAATATTTATTGCTTAA
1 TTAAATATTTAAAATATAATT--TATATATT-CTTAA
*
67618574 --AAATATTTCAAATTTATAATTTATATATT
1 TTAAATATTT-AAA-ATATAATTTATATATT
67618603 AAAATATTAA
Statistics
Matches: 51, Mismatches: 5, Indels: 14
0.73 0.07 0.20
Matches are distributed among these distances:
31 6 0.12
32 6 0.12
33 17 0.33
34 3 0.06
35 13 0.25
37 6 0.12
ACGTcount: A:0.45, C:0.02, G:0.01, T:0.52
Consensus pattern (34 bp):
TTAAATATTTAAAATATAATTTATATATTCTTAA
Found at i:67619643 original size:32 final size:33
Alignment explanation
Indices: 67619607--67619671 Score: 105
Period size: 33 Copynumber: 2.0 Consensus size: 33
67619597 TTATTCTTTG
* *
67619607 GACAAA-TTTGTAACCAGTTTTTATGTTAATTA
1 GACAAATTTTGTAACAACTTTTTATGTTAATTA
67619639 GACAAATTTTGTAACAACTTTTTATGTTAATTA
1 GACAAATTTTGTAACAACTTTTTATGTTAATTA
67619672 AAAAACTTAC
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
32 6 0.20
33 24 0.80
ACGTcount: A:0.35, C:0.09, G:0.11, T:0.45
Consensus pattern (33 bp):
GACAAATTTTGTAACAACTTTTTATGTTAATTA
Found at i:67621717 original size:162 final size:162
Alignment explanation
Indices: 67621446--67621768 Score: 619
Period size: 162 Copynumber: 2.0 Consensus size: 162
67621436 TAAAGAGGAC
*
67621446 TACATCTTAAATTTTTTTCTTTCGACATTAAAGACATTTGATAATCAATTAGGTACCAATTTTTG
1 TACATCTTAAATTTTTTTCTTTCGACATTAAAGACATTTGATAATCAATTAGGTACCAATTTTTA
* *
67621511 GGCGTTACGAGGGTGCTAATCCTTCCTCATACGTAACTGACTCCCGAACCCGTTCTTTTATTTCG
66 GGCGTTACGAGGGTGCTAATCCTTCCTCATACGTAACCGACTCCCGAACCCATTCTTTTATTTCG
67621576 TGGACCAAAACTAATGATTTTAAAACAAAATG
131 TGGACCAAAACTAATGATTTTAAAACAAAATG
67621608 TACATCTTAAATTTTTTTCTTTCGACATTAAAGACATTTGATAATCAATTAGGTACCAATTTTTA
1 TACATCTTAAATTTTTTTCTTTCGACATTAAAGACATTTGATAATCAATTAGGTACCAATTTTTA
67621673 GGCGTTACGAGGGTGCTAATCCTTCCTCATACGTAACCGACTCCCGAACCCATTCTTTTATTTCG
66 GGCGTTACGAGGGTGCTAATCCTTCCTCATACGTAACCGACTCCCGAACCCATTCTTTTATTTCG
67621738 TGGACCAAAACTAATGATTTTAAAACAAAAT
131 TGGACCAAAACTAATGATTTTAAAACAAAAT
67621769 ATTTTAAAGG
Statistics
Matches: 158, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
162 158 1.00
ACGTcount: A:0.31, C:0.20, G:0.13, T:0.36
Consensus pattern (162 bp):
TACATCTTAAATTTTTTTCTTTCGACATTAAAGACATTTGATAATCAATTAGGTACCAATTTTTA
GGCGTTACGAGGGTGCTAATCCTTCCTCATACGTAACCGACTCCCGAACCCATTCTTTTATTTCG
TGGACCAAAACTAATGATTTTAAAACAAAATG
Found at i:67625293 original size:15 final size:15
Alignment explanation
Indices: 67625273--67625303 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
67625263 TTTACTTTCC
67625273 AGAGAGGTAGAAAAG
1 AGAGAGGTAGAAAAG
67625288 AGAGAGGTAGAAAAG
1 AGAGAGGTAGAAAAG
67625303 A
1 A
67625304 AAATCTGGAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.55, C:0.00, G:0.39, T:0.06
Consensus pattern (15 bp):
AGAGAGGTAGAAAAG
Found at i:67642109 original size:13 final size:13
Alignment explanation
Indices: 67642091--67642115 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
67642081 TAATTGAAAT
67642091 TTATTTAATTTTA
1 TTATTTAATTTTA
67642104 TTATTTAATTTT
1 TTATTTAATTTT
67642116 TGTAAATAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (13 bp):
TTATTTAATTTTA
Found at i:67642162 original size:22 final size:23
Alignment explanation
Indices: 67642118--67642163 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 23
67642108 TTAATTTTTG
* *
67642118 TAAATAATTTTTTATATACATAA
1 TAAATAATTTTTTATAAAAATAA
*
67642141 TAAATATTTTTTTA-AAAAATAA
1 TAAATAATTTTTTATAAAAATAA
67642163 T
1 T
67642164 GATAAATCTA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
22 7 0.35
23 13 0.65
ACGTcount: A:0.50, C:0.02, G:0.00, T:0.48
Consensus pattern (23 bp):
TAAATAATTTTTTATAAAAATAA
Found at i:67642412 original size:17 final size:18
Alignment explanation
Indices: 67642361--67642413 Score: 63
Period size: 19 Copynumber: 2.9 Consensus size: 18
67642351 AGTTTTTTTT
*
67642361 TAAAAAAGTATTTTTTAGA
1 TAAAAAA-TATTTTTAAGA
67642380 TAAAAATATATTTTTAAGA
1 TAAAAA-ATATTTTTAAGA
*
67642399 T-AAAACTATTTTTAA
1 TAAAAAATATTTTTAA
67642414 ACAAGTCATT
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
17 9 0.29
18 4 0.13
19 17 0.55
20 1 0.03
ACGTcount: A:0.49, C:0.02, G:0.06, T:0.43
Consensus pattern (18 bp):
TAAAAAATATTTTTAAGA
Found at i:67658508 original size:46 final size:46
Alignment explanation
Indices: 67658456--67658769 Score: 387
Period size: 46 Copynumber: 6.8 Consensus size: 46
67658446 AGTGTGCTAT
* *
67658456 CTGATATGGAATGTGTAAGACCATGGTTGAAAGATACCATGACAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
67658502 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* *
67658548 GTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGTAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* **
67658594 GTGATATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * * *
67658640 CTGACATGAAATGAGTAAGACTATGGTTGAAAGATACCATGGCAAT
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* *** ***
67658686 ATGACGGGAAAATAAATAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATG-AAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * * * * *
67658733 ATGACA-GAAAACGAGTAAAACCATAGTTGAAAGATAC
1 CTGATATG-AAATGTGTAAGACCATGGTTGAAAGATAC
67658770 TATGAAATCG
Statistics
Matches: 242, Mismatches: 25, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
46 203 0.84
47 39 0.16
ACGTcount: A:0.41, C:0.14, G:0.24, T:0.22
Consensus pattern (46 bp):
CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
Found at i:67663929 original size:19 final size:17
Alignment explanation
Indices: 67663905--67663951 Score: 58
Period size: 19 Copynumber: 2.6 Consensus size: 17
67663895 CAGTGGGGGC
67663905 AAAAAAAAAAGAAAAAGTA
1 AAAAAAAAAAGAAAAA--A
*
67663924 AAAAAAAAGAGAAAAAA
1 AAAAAAAAAAGAAAAAA
67663941 AAAACAAAAAA
1 AAAA-AAAAAA
67663952 AACCAAATAA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
17 5 0.20
18 5 0.20
19 15 0.60
ACGTcount: A:0.87, C:0.02, G:0.09, T:0.02
Consensus pattern (17 bp):
AAAAAAAAAAGAAAAAA
Found at i:67664419 original size:7 final size:6
Alignment explanation
Indices: 67664405--67664453 Score: 64
Period size: 6 Copynumber: 7.8 Consensus size: 6
67664395 AAAAAAAACG
67664405 AAAAGA AAAATGAA AAAATGA AAAAGA AAAA-A AAAAGA AAAAGA AAAAG
1 AAAAGA AAAA-G-A AAAA-GA AAAAGA AAAAGA AAAAGA AAAAGA AAAAG
67664454 GAGAGGCCAA
Statistics
Matches: 40, Mismatches: 0, Indels: 6
0.87 0.00 0.13
Matches are distributed among these distances:
5 5 0.12
6 22 0.55
7 6 0.15
8 7 0.17
ACGTcount: A:0.82, C:0.00, G:0.14, T:0.04
Consensus pattern (6 bp):
AAAAGA
Found at i:67664422 original size:21 final size:21
Alignment explanation
Indices: 67664397--67664452 Score: 68
Period size: 20 Copynumber: 2.9 Consensus size: 21
67664387 ACTTCACTAA
67664397 AAAAAACG-AAAAGAAAAATG
1 AAAAAACGAAAAAGAAAAATG
*
67664417 AAAAAATGAAAAAG-AAAA--
1 AAAAAACGAAAAAGAAAAATG
67664435 AAAAAA-GAAAAAGAAAAA
1 AAAAAACGAAAAAGAAAAA
67664453 GGAGAGGCCA
Statistics
Matches: 33, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
17 7 0.21
18 10 0.30
20 11 0.33
21 5 0.15
ACGTcount: A:0.82, C:0.02, G:0.12, T:0.04
Consensus pattern (21 bp):
AAAAAACGAAAAAGAAAAATG
Found at i:67664439 original size:17 final size:17
Alignment explanation
Indices: 67664395--67664452 Score: 64
Period size: 17 Copynumber: 3.2 Consensus size: 17
67664385 ATACTTCACT
*
67664395 AAAAAAAACG-AAAAGAA
1 AAAAAAAAAGAAAAAG-A
67664412 AAATGAAAAAATGAAAAAGA
1 AAA--AAAAAA-GAAAAAGA
67664432 AAAAAAAAAGAAAAAGA
1 AAAAAAAAAGAAAAAGA
67664449 AAAA
1 AAAA
67664453 GGAGAGGCCA
Statistics
Matches: 36, Mismatches: 1, Indels: 8
0.80 0.02 0.18
Matches are distributed among these distances:
17 15 0.42
18 6 0.17
19 5 0.14
20 5 0.14
21 5 0.14
ACGTcount: A:0.83, C:0.02, G:0.12, T:0.03
Consensus pattern (17 bp):
AAAAAAAAAGAAAAAGA
Found at i:67665694 original size:87 final size:87
Alignment explanation
Indices: 67665534--67666110 Score: 1075
Period size: 87 Copynumber: 6.6 Consensus size: 87
67665524 ATATTGGTAG
* * * * * *
67665534 GAAGTGGATCGACGATGCAGA-TCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGAAGAAAGCA
1 GAAGTAGATCGAAGATGCAGATTC-TGCCTTCCTATATTGGTAG-GAAGTAGATCGAAGAAAGCA
67665598 GATCTTATCTTCATGTATTAGCGT
64 GATCTTATCTTCATGTATTAGCGT
67665622 GAAGTAGATCGAAGATGCAGATTCTGCCTTCCTATATTGGTAGGAAGTAGATCGAAGAAAGCAGA
1 GAAGTAGATCGAAGATGCAGATTCTGCCTTCCTATATTGGTAGGAAGTAGATCGAAGAAAGCAGA
67665687 TCTTATCTTCATGTATTAGCGT
66 TCTTATCTTCATGTATTAGCGT
67665709 GAAGTAGATCGAAGATGCAGATTCTGCCTTCCTATATTGGTAGGAAGTAGATCGAAGAAAGCAGA
1 GAAGTAGATCGAAGATGCAGATTCTGCCTTCCTATATTGGTAGGAAGTAGATCGAAGAAAGCAGA
67665774 TCTTATCTTCATGTATTAGCGT
66 TCTTATCTTCATGTATTAGCGT
67665796 GAAGTAGATCGAAGATGCAGATTCTGCCTTCCTATATTGGTAGGAAGTAGATCGAAGAAAGCAGA
1 GAAGTAGATCGAAGATGCAGATTCTGCCTTCCTATATTGGTAGGAAGTAGATCGAAGAAAGCAGA
67665861 TCTTATCTTCATGTATTAGCGT
66 TCTTATCTTCATGTATTAGCGT
67665883 GAAGTAGATCGAAGATGCAGATTCTGCCTTCCTATATTGGTAGGAAGTAGATCGAAGAAAGCAGA
1 GAAGTAGATCGAAGATGCAGATTCTGCCTTCCTATATTGGTAGGAAGTAGATCGAAGAAAGCAGA
67665948 TCTTATCTTCATGTATTAGCGT
66 TCTTATCTTCATGTATTAGCGT
67665970 GAAGTAGATCGAAGATGCAGATTCTGCCTTCCTATATTGGTAGGAAGTAGATCGAAGAAAGCAGA
1 GAAGTAGATCGAAGATGCAGATTCTGCCTTCCTATATTGGTAGGAAGTAGATCGAAGAAAGCAGA
67666035 TCTTATCTTCATGTATTAGCGT
66 TCTTATCTTCATGTATTAGCGT
67666057 GAAGTAGATCGAAGATGCAGATTCTGCCTTCCTATATTGGTAGGAAGTAGATCG
1 GAAGTAGATCGAAGATGCAGATTCTGCCTTCCTATATTGGTAGGAAGTAGATCG
67666111 NNNNNNNNNN
Statistics
Matches: 482, Mismatches: 6, Indels: 3
0.98 0.01 0.01
Matches are distributed among these distances:
87 446 0.93
88 34 0.07
89 2 0.00
ACGTcount: A:0.30, C:0.15, G:0.25, T:0.29
Consensus pattern (87 bp):
GAAGTAGATCGAAGATGCAGATTCTGCCTTCCTATATTGGTAGGAAGTAGATCGAAGAAAGCAGA
TCTTATCTTCATGTATTAGCGT
Found at i:67666646 original size:55 final size:55
Alignment explanation
Indices: 67666569--67666673 Score: 167
Period size: 55 Copynumber: 1.9 Consensus size: 55
67666559 CCAGCCCGTA
67666569 TCCTCCCTCGTGTAACTCTCTGAGTAGGGTCACACAGACGTGTCACACACTCGTG
1 TCCTCCCTCGTGTAACTCTCTGAGTAGGGTCACACAGACGTGTCACACACTCGTG
* * *
67666624 TCCTCACC-CGTGTAACTTTCTGAGTAGGGTCACACAGTCGTGTCGCACAC
1 TCCTC-CCTCGTGTAACTCTCTGAGTAGGGTCACACAGACGTGTCACACAC
67666674 CGATATGTCA
Statistics
Matches: 46, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
55 44 0.96
56 2 0.04
ACGTcount: A:0.20, C:0.32, G:0.22, T:0.26
Consensus pattern (55 bp):
TCCTCCCTCGTGTAACTCTCTGAGTAGGGTCACACAGACGTGTCACACACTCGTG
Found at i:67667787 original size:24 final size:25
Alignment explanation
Indices: 67667759--67667822 Score: 85
Period size: 29 Copynumber: 2.4 Consensus size: 25
67667749 TGAACACCAT
67667759 TCAAC-TCACAATTGAGTAGATTCA
1 TCAACATCACAATTGAGTAGATTCA
67667783 TCAACATCACATATAATTGAGTAGATTCA
1 TCAACATCAC----AATTGAGTAGATTCA
67667812 TCAACATCACA
1 TCAACATCACA
67667823 TATAATTTCA
Statistics
Matches: 35, Mismatches: 0, Indels: 9
0.80 0.00 0.20
Matches are distributed among these distances:
24 5 0.14
25 5 0.14
29 25 0.71
ACGTcount: A:0.41, C:0.22, G:0.09, T:0.28
Consensus pattern (25 bp):
TCAACATCACAATTGAGTAGATTCA
Found at i:67667810 original size:29 final size:29
Alignment explanation
Indices: 67667768--67667829 Score: 124
Period size: 29 Copynumber: 2.1 Consensus size: 29
67667758 TTCAACTCAC
67667768 AATTGAGTAGATTCATCAACATCACATAT
1 AATTGAGTAGATTCATCAACATCACATAT
67667797 AATTGAGTAGATTCATCAACATCACATAT
1 AATTGAGTAGATTCATCAACATCACATAT
67667826 AATT
1 AATT
67667830 TCATTCATAA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 33 1.00
ACGTcount: A:0.42, C:0.16, G:0.10, T:0.32
Consensus pattern (29 bp):
AATTGAGTAGATTCATCAACATCACATAT
Found at i:67674739 original size:200 final size:200
Alignment explanation
Indices: 67674396--67674795 Score: 782
Period size: 200 Copynumber: 2.0 Consensus size: 200
67674386 GAGTGGGTCG
67674396 CGCAATATGCCCGAACCAATCCGGCTGTCCAACAATTCCTGAATTTGAATAATCCACCCCAAGAG
1 CGCAATATGCCCGAACCAATCCGGCTGTCCAACAATTCCTGAATTTGAATAATCCACCCCAAGAG
67674461 CCCGTAATGCCATCAGTTACTGATCCTGTGAGGCTGAGTAAGCCACCTGTAGACTTGATTAGGAA
66 CCCGTAATGCCATCAGTTACTGATCCTGTGAGGCTGAGTAAGCCACCTGTAGACTTGATTAGGAA
67674526 GCGCGGGGCCGAGGAGTTCAGGGCCATAGTTACTGATGATGCTGAAAGGGCCGAGTTCTGGCTTG
131 GCGCGGGGCCGAGGAGTTCAGGGCCATAGTTACTGATGATGCTGAAAGGGCCGAGTTCTGGCTTG
67674591 ATAAC
196 ATAAC
67674596 CGCAATATGCCCGAACCAATCCGGCTGTCCAACAATTCCTGAATTTGAATAATCCACCCCAAGAG
1 CGCAATATGCCCGAACCAATCCGGCTGTCCAACAATTCCTGAATTTGAATAATCCACCCCAAGAG
*
67674661 CCCGTAATGCCATCAGTTACTGATCCTGTGAGGCTGAGTAAGCCTCCTGTAGACTTGATTAGGAA
66 CCCGTAATGCCATCAGTTACTGATCCTGTGAGGCTGAGTAAGCCACCTGTAGACTTGATTAGGAA
*
67674726 GCGCGGGGCCGAGGAGTTCAGGGCCATAGTTACTGATGATGCTGAAATGGCCGAGTTCTGGCTTG
131 GCGCGGGGCCGAGGAGTTCAGGGCCATAGTTACTGATGATGCTGAAAGGGCCGAGTTCTGGCTTG
67674791 ATAAC
196 ATAAC
67674796 ACCATTCGGG
Statistics
Matches: 198, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
200 198 1.00
ACGTcount: A:0.26, C:0.25, G:0.26, T:0.23
Consensus pattern (200 bp):
CGCAATATGCCCGAACCAATCCGGCTGTCCAACAATTCCTGAATTTGAATAATCCACCCCAAGAG
CCCGTAATGCCATCAGTTACTGATCCTGTGAGGCTGAGTAAGCCACCTGTAGACTTGATTAGGAA
GCGCGGGGCCGAGGAGTTCAGGGCCATAGTTACTGATGATGCTGAAAGGGCCGAGTTCTGGCTTG
ATAAC
Found at i:67679147 original size:47 final size:47
Alignment explanation
Indices: 67679078--67679171 Score: 188
Period size: 47 Copynumber: 2.0 Consensus size: 47
67679068 GGTAAGATTT
67679078 TCGGGGACGAAAATTTCTTAAGTGGGGGAGAGTTGTGACAGCCCAAA
1 TCGGGGACGAAAATTTCTTAAGTGGGGGAGAGTTGTGACAGCCCAAA
67679125 TCGGGGACGAAAATTTCTTAAGTGGGGGAGAGTTGTGACAGCCCAAA
1 TCGGGGACGAAAATTTCTTAAGTGGGGGAGAGTTGTGACAGCCCAAA
67679172 GTTGACCCTA
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
47 47 1.00
ACGTcount: A:0.30, C:0.15, G:0.34, T:0.21
Consensus pattern (47 bp):
TCGGGGACGAAAATTTCTTAAGTGGGGGAGAGTTGTGACAGCCCAAA
Found at i:67680760 original size:40 final size:40
Alignment explanation
Indices: 67680677--67681057 Score: 570
Period size: 40 Copynumber: 9.6 Consensus size: 40
67680667 TTGAATGCTG
* * * * * *
67680677 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTATTAAA
* * * *
67680717 TCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATATTAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTATTAAA
67680757 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
67680797 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
67680837 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
67680877 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
67680917 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
*
67680957 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
67680997 TCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
67681036 ACCGGGCTATGTCCCGAAGGCA
1 TCCGGGTTAAGTCCCGAAGGCA
67681058 CTTGAACGAG
Statistics
Matches: 320, Mismatches: 18, Indels: 7
0.93 0.05 0.02
Matches are distributed among these distances:
39 33 0.10
40 279 0.87
41 8 0.03
ACGTcount: A:0.25, C:0.20, G:0.28, T:0.27
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
Found at i:67684690 original size:14 final size:14
Alignment explanation
Indices: 67684651--67684694 Score: 63
Period size: 14 Copynumber: 3.1 Consensus size: 14
67684641 AAAACGGTTG
*
67684651 TAACAGTTAGTAAT
1 TAACAGTTAGTAGT
67684665 TAACA-TTGAGTAGT
1 TAACAGTT-AGTAGT
67684679 TAACAGTTAGTAGT
1 TAACAGTTAGTAGT
67684693 TA
1 TA
67684695 GTTGTTGATG
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
13 2 0.07
14 23 0.85
15 2 0.07
ACGTcount: A:0.39, C:0.07, G:0.18, T:0.36
Consensus pattern (14 bp):
TAACAGTTAGTAGT
Found at i:67685191 original size:9 final size:9
Alignment explanation
Indices: 67685177--67685203 Score: 54
Period size: 9 Copynumber: 3.0 Consensus size: 9
67685167 TGGTTGAATA
67685177 TTTTATTAT
1 TTTTATTAT
67685186 TTTTATTAT
1 TTTTATTAT
67685195 TTTTATTAT
1 TTTTATTAT
67685204 AAGATATTTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 18 1.00
ACGTcount: A:0.22, C:0.00, G:0.00, T:0.78
Consensus pattern (9 bp):
TTTTATTAT
Found at i:67685242 original size:33 final size:33
Alignment explanation
Indices: 67685174--67685245 Score: 83
Period size: 33 Copynumber: 2.2 Consensus size: 33
67685164 GATTGGTTGA
* * * * *
67685174 ATATTTTATTATTTTTATTATTTTTATTATAAG
1 ATATTTTAATATTTTAATTATATTAATTAAAAG
67685207 ATATTTTAATATTTTAATTA-ATTAATTAAAGAG
1 ATATTTTAATATTTTAATTATATTAATTAAA-AG
67685240 ATATTT
1 ATATTT
67685246 GCATGAAAAG
Statistics
Matches: 33, Mismatches: 5, Indels: 2
0.82 0.12 0.05
Matches are distributed among these distances:
32 7 0.21
33 26 0.79
ACGTcount: A:0.38, C:0.00, G:0.04, T:0.58
Consensus pattern (33 bp):
ATATTTTAATATTTTAATTATATTAATTAAAAG
Found at i:67696274 original size:41 final size:41
Alignment explanation
Indices: 67696229--67696397 Score: 157
Period size: 41 Copynumber: 4.1 Consensus size: 41
67696219 GCACAAACAT
* *
67696229 CCTTCGGAA-TCAAGCCCGATTCTTAGCACTGGCTCAAAAGC
1 CCTTCGGAACT-AAGCCCGATTATGAGCACTGGCTCAAAAGC
* * * *
67696270 CCTTC-GAGACCAAGCTCGGATTA-GACCACTGGCTCAAAGGC
1 CCTTCGGA-ACTAAGC-CCGATTATGAGCACTGGCTCAAAAGC
* * *
67696311 CCTTCGGAACTAAGTCCGGTTATGA-CACTGGCTCTAAAGC
1 CCTTCGGAACTAAGCCCGATTATGAGCACTGGCTCAAAAGC
* ** * *
67696351 CCTTCGAAACTAAGTTCGGTTATTAGCACTGGCTCAAAAGC
1 CCTTCGGAACTAAGCCCGATTATGAGCACTGGCTCAAAAGC
67696392 CCTTCG
1 CCTTCG
67696398 AGACCAAGCT
Statistics
Matches: 106, Mismatches: 16, Indels: 12
0.79 0.12 0.09
Matches are distributed among these distances:
40 42 0.40
41 57 0.54
42 7 0.07
ACGTcount: A:0.26, C:0.30, G:0.21, T:0.23
Consensus pattern (41 bp):
CCTTCGGAACTAAGCCCGATTATGAGCACTGGCTCAAAAGC
Found at i:67696398 original size:41 final size:41
Alignment explanation
Indices: 67696251--67696398 Score: 185
Period size: 41 Copynumber: 3.6 Consensus size: 41
67696241 AGCCCGATTC
* * *
67696251 TTAGCACTGGCTCAAAAGCCCTTCGAGACCAAGCTCGG--A
1 TTAGCACTGGCTCAAAAGCCCTTCGAAACTAAGTTCGGTTA
* * *
67696290 TTAGACCACTGGCTCAAAGGCCCTTCGGAACTAAGTCCGGTTA
1 TTAG--CACTGGCTCAAAAGCCCTTCGAAACTAAGTTCGGTTA
* *
67696333 TGA-CACTGGCTCTAAAGCCCTTCGAAACTAAGTTCGGTTA
1 TTAGCACTGGCTCAAAAGCCCTTCGAAACTAAGTTCGGTTA
67696373 TTAGCACTGGCTCAAAAGCCCTTCGA
1 TTAGCACTGGCTCAAAAGCCCTTCGA
67696399 GACCAAGCTC
Statistics
Matches: 91, Mismatches: 13, Indels: 8
0.81 0.12 0.07
Matches are distributed among these distances:
39 4 0.04
40 35 0.38
41 49 0.54
43 3 0.03
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.23
Consensus pattern (41 bp):
TTAGCACTGGCTCAAAAGCCCTTCGAAACTAAGTTCGGTTA
Found at i:67699848 original size:29 final size:28
Alignment explanation
Indices: 67699806--67699912 Score: 101
Period size: 29 Copynumber: 3.8 Consensus size: 28
67699796 ATAATATGAT
* * *
67699806 TTGGGACTAATGGGCCATATGAAGTTGAA
1 TTGGGCCTAGTGGGCCATATGAA-TTAAA
*
67699835 TTGGGCCTAGTGGGCCATAAGAATATAAA
1 TTGGGCCTAGTGGGCCATATGAAT-TAAA
* *
67699864 CTGGGCC-AGATGGGCCATTTGAA-TAAGA
1 TTGGGCCTAG-TGGGCCATATGAATTAA-A
*
67699892 TTGGGCCTAGTGGGCTATATG
1 TTGGGCCTAGTGGGCCATATG
67699913 CATGTATGTA
Statistics
Matches: 64, Mismatches: 10, Indels: 9
0.77 0.12 0.11
Matches are distributed among these distances:
27 3 0.05
28 19 0.30
29 42 0.66
ACGTcount: A:0.28, C:0.14, G:0.32, T:0.26
Consensus pattern (28 bp):
TTGGGCCTAGTGGGCCATATGAATTAAA
Found at i:67701968 original size:36 final size:36
Alignment explanation
Indices: 67701906--67701996 Score: 155
Period size: 36 Copynumber: 2.5 Consensus size: 36
67701896 AGGCATCCAA
* *
67701906 ATCAACCACAACCAAGACTAAAATGTACCATTTCAAT
1 ATCAACCACAAAC-ATACTAAAATGTACCATTTCAAT
67701943 ATCAACCACAAACATACTAAAATGTACCATTTCAAT
1 ATCAACCACAAACATACTAAAATGTACCATTTCAAT
67701979 ATCAACCACAAACATACT
1 ATCAACCACAAACATACT
67701997 TATAAACTCA
Statistics
Matches: 52, Mismatches: 2, Indels: 1
0.95 0.04 0.02
Matches are distributed among these distances:
36 40 0.77
37 12 0.23
ACGTcount: A:0.47, C:0.27, G:0.03, T:0.22
Consensus pattern (36 bp):
ATCAACCACAAACATACTAAAATGTACCATTTCAAT
Found at i:67713433 original size:21 final size:20
Alignment explanation
Indices: 67713399--67713438 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
67713389 GCCATAATGG
**
67713399 CCACACGGGTGTGTTGCCCTT
1 CCACACGGACGTG-TGCCCTT
67713420 CCACACGGACGTGTGCCCT
1 CCACACGGACGTGTGCCCT
67713439 GTTTCAAGGG
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 6 0.35
21 11 0.65
ACGTcount: A:0.12, C:0.38, G:0.28, T:0.23
Consensus pattern (20 bp):
CCACACGGACGTGTGCCCTT
Found at i:67719881 original size:43 final size:42
Alignment explanation
Indices: 67719796--67719921 Score: 137
Period size: 43 Copynumber: 3.0 Consensus size: 42
67719786 ACATAGTATT
* * *
67719796 ATACCAATTCCATATCCCAAATATGGTCTTACATGTAATCTC
1 ATACCAATGCCATAGCCCAAATATGGTCTTACACGTAATCTC
* * ** *
67719838 ATATCGATGCCAATAGCCCAGCTATGGTCTTCCACG-AAGTCTC
1 ATACCAATGCC-ATAGCCCAAATATGGTCTTACACGTAA-TCTC
* *
67719881 ATACCAATGCCATATCCCAAATATGGTCTTACACATAATCT
1 ATACCAATGCCATAGCCCAAATATGGTCTTACACGTAATCT
67719922 TAGTAACCCT
Statistics
Matches: 66, Mismatches: 15, Indels: 6
0.76 0.17 0.07
Matches are distributed among these distances:
42 32 0.48
43 34 0.52
ACGTcount: A:0.32, C:0.28, G:0.11, T:0.29
Consensus pattern (42 bp):
ATACCAATGCCATAGCCCAAATATGGTCTTACACGTAATCTC
Found at i:67723662 original size:23 final size:22
Alignment explanation
Indices: 67723611--67723664 Score: 56
Period size: 23 Copynumber: 2.4 Consensus size: 22
67723601 AATAGTGCAT
67723611 AATTGAATGTGACCATTTAGTTG
1 AATTGAATGTGA-CATTTAGTTG
* *
67723634 ATTTGAATGTGA-ATTTGGTATG
1 AATTGAATGTGACATTTAGT-TG
67723656 AAATTGAAT
1 -AATTGAAT
67723665 AACATATTGT
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
21 6 0.23
22 2 0.08
23 18 0.69
ACGTcount: A:0.33, C:0.04, G:0.22, T:0.41
Consensus pattern (22 bp):
AATTGAATGTGACATTTAGTTG
Found at i:67728364 original size:7 final size:7
Alignment explanation
Indices: 67728349--67728380 Score: 55
Period size: 7 Copynumber: 4.6 Consensus size: 7
67728339 AGTCGTTTCA
67728349 TATTTAG
1 TATTTAG
*
67728356 TACTTAG
1 TATTTAG
67728363 TATTTAG
1 TATTTAG
67728370 TATTTAG
1 TATTTAG
67728377 TATT
1 TATT
67728381 ATGTATATAA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
7 23 1.00
ACGTcount: A:0.28, C:0.03, G:0.12, T:0.56
Consensus pattern (7 bp):
TATTTAG
Found at i:67730501 original size:28 final size:28
Alignment explanation
Indices: 67730420--67730505 Score: 118
Period size: 28 Copynumber: 3.0 Consensus size: 28
67730410 ATGAGCATGA
* *
67730420 ATATGAATGTGACTGGGCCTAACGGGCC
1 ATATGAATGTGATTGGGCCTAATGGGCC
*
67730448 ATATAAATGTGATTTGGGCCTAATGGGCC
1 ATATGAATGTGA-TTGGGCCTAATGGGCC
* *
67730477 ATATGAATATGATTGGGCTTAATGGGCC
1 ATATGAATGTGATTGGGCCTAATGGGCC
67730505 A
1 A
67730506 GATACAGGTA
Statistics
Matches: 51, Mismatches: 6, Indels: 2
0.86 0.10 0.03
Matches are distributed among these distances:
28 27 0.53
29 24 0.47
ACGTcount: A:0.28, C:0.15, G:0.29, T:0.28
Consensus pattern (28 bp):
ATATGAATGTGATTGGGCCTAATGGGCC
Found at i:67736374 original size:21 final size:19
Alignment explanation
Indices: 67736332--67736374 Score: 50
Period size: 19 Copynumber: 2.2 Consensus size: 19
67736322 TTTGTTTTTC
* *
67736332 TTTCTTTTCTTCTTGCCAA
1 TTTCTATTCTTCTTACCAA
67736351 TTTCTATTCTTCTCTACACAA
1 TTTCTATTCTTCT-TAC-CAA
67736372 TTT
1 TTT
67736375 TCTTTGTTTC
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
19 12 0.60
20 2 0.10
21 6 0.30
ACGTcount: A:0.16, C:0.26, G:0.02, T:0.56
Consensus pattern (19 bp):
TTTCTATTCTTCTTACCAA
Found at i:67736819 original size:8 final size:8
Alignment explanation
Indices: 67736785--67736827 Score: 52
Period size: 8 Copynumber: 5.4 Consensus size: 8
67736775 ATGTATCGGC
67736785 AAAAGCC-
1 AAAAGCCG
67736792 AAAATGCCG
1 AAAA-GCCG
*
67736801 AAAAGCTG
1 AAAAGCCG
*
67736809 AAATGCCG
1 AAAAGCCG
67736817 AAAAGCCG
1 AAAAGCCG
67736825 AAA
1 AAA
67736828 GTTTGGCTAT
Statistics
Matches: 30, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
7 4 0.13
8 22 0.73
9 4 0.13
ACGTcount: A:0.51, C:0.21, G:0.21, T:0.07
Consensus pattern (8 bp):
AAAAGCCG
Found at i:67736827 original size:16 final size:16
Alignment explanation
Indices: 67736785--67736827 Score: 68
Period size: 16 Copynumber: 2.7 Consensus size: 16
67736775 ATGTATCGGC
*
67736785 AAAAGCCAAAATGCCG
1 AAAAGCCGAAATGCCG
*
67736801 AAAAGCTGAAATGCCG
1 AAAAGCCGAAATGCCG
67736817 AAAAGCCGAAA
1 AAAAGCCGAAA
67736828 GTTTGGCTAT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 24 1.00
ACGTcount: A:0.51, C:0.21, G:0.21, T:0.07
Consensus pattern (16 bp):
AAAAGCCGAAATGCCG
Found at i:67737149 original size:28 final size:29
Alignment explanation
Indices: 67737051--67737153 Score: 120
Period size: 29 Copynumber: 3.6 Consensus size: 29
67737041 ATGAATGTGA
* *
67737051 TTGGGCCTAACGGGCCTTATAAATGA-GAT
1 TTGGGCCTAATGGGCCATATAAAT-ATGAT
* * **
67737080 TTGGGCCTAATAGGCCATATACAGGTGAT
1 TTGGGCCTAATGGGCCATATAAATATGAT
67737109 TTGGGCCTAATGGGCCATATAAATATGA-
1 TTGGGCCTAATGGGCCATATAAATATGAT
*
67737137 TTGGGCTTAATGGGCCA
1 TTGGGCCTAATGGGCCA
67737154 GATACAGGTA
Statistics
Matches: 62, Mismatches: 11, Indels: 3
0.82 0.14 0.04
Matches are distributed among these distances:
28 16 0.26
29 46 0.74
ACGTcount: A:0.27, C:0.17, G:0.28, T:0.28
Consensus pattern (29 bp):
TTGGGCCTAATGGGCCATATAAATATGAT
Found at i:67737159 original size:57 final size:57
Alignment explanation
Indices: 67737047--67737162 Score: 155
Period size: 57 Copynumber: 2.0 Consensus size: 57
67737037 GAATATGAAT
* *
67737047 GTGATTGGGCCTAACGGGCCTTATAAATGAGATTTGGGCCTAATAGGCCATATACAG
1 GTGATTGGGCCTAACGGGCCATATAAATGAGATTTGGGCCTAATAGGCCAGATACAG
* * *
67737104 GTGATTTGGGCCTAATGGGCCATATAAAT-ATGA-TTGGGCTTAATGGGCCAGATACAG
1 GTGA-TTGGGCCTAACGGGCCATATAAATGA-GATTTGGGCCTAATAGGCCAGATACAG
67737161 GT
1 GT
67737163 ATGTGAAATT
Statistics
Matches: 52, Mismatches: 5, Indels: 4
0.85 0.08 0.07
Matches are distributed among these distances:
57 28 0.54
58 24 0.46
ACGTcount: A:0.28, C:0.16, G:0.29, T:0.28
Consensus pattern (57 bp):
GTGATTGGGCCTAACGGGCCATATAAATGAGATTTGGGCCTAATAGGCCAGATACAG
Found at i:67738197 original size:21 final size:22
Alignment explanation
Indices: 67738159--67738206 Score: 53
Period size: 21 Copynumber: 2.2 Consensus size: 22
67738149 GTAACTGAAA
**
67738159 GGTTTCTTTTTAAGTTAATTAG
1 GGTTTCTTTTTAAGTTAAGAAG
**
67738181 GGTTTC-TTTTATTTTAAGAAG
1 GGTTTCTTTTTAAGTTAAGAAG
67738202 GGTTT
1 GGTTT
67738207 TCAATGAAAA
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
21 16 0.73
22 6 0.27
ACGTcount: A:0.21, C:0.04, G:0.21, T:0.54
Consensus pattern (22 bp):
GGTTTCTTTTTAAGTTAAGAAG
Found at i:67738541 original size:21 final size:21
Alignment explanation
Indices: 67738517--67738566 Score: 82
Period size: 21 Copynumber: 2.4 Consensus size: 21
67738507 CCACAACTGG
*
67738517 AGCAACCACAACTCTGGCCGA
1 AGCAACCACAACTCCGGCCGA
*
67738538 AGCAACCACAACTCCGGCCGG
1 AGCAACCACAACTCCGGCCGA
67738559 AGCAACCA
1 AGCAACCA
67738567 AGGAGGAATT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.34, C:0.40, G:0.20, T:0.06
Consensus pattern (21 bp):
AGCAACCACAACTCCGGCCGA
Found at i:67754435 original size:27 final size:27
Alignment explanation
Indices: 67754409--67754506 Score: 124
Period size: 27 Copynumber: 3.6 Consensus size: 27
67754399 CCAATTTGTG
* * *
67754409 AAATTACTAAAATACCCGTGTAGTGTG
1 AAATTACCAAAATACCCTTGTAGTGTA
*
67754436 TAATTACCAAAATACCCTTGTAGTGTA
1 AAATTACCAAAATACCCTTGTAGTGTA
* *
67754463 AAATTACCAGAATACCCTTGTAATGTA
1 AAATTACCAAAATACCCTTGTAGTGTA
* *
67754490 AAATTATCGAAATACCC
1 AAATTACCAAAATACCC
67754507 CAGTAGGGCA
Statistics
Matches: 61, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 61 1.00
ACGTcount: A:0.40, C:0.18, G:0.12, T:0.30
Consensus pattern (27 bp):
AAATTACCAAAATACCCTTGTAGTGTA
Found at i:67755003 original size:27 final size:27
Alignment explanation
Indices: 67754908--67755009 Score: 80
Period size: 27 Copynumber: 3.8 Consensus size: 27
67754898 ATCTTGATTA
* * *
67754908 TGGCTTTGTGCCAATCGTATTTACCTG
1 TGGCTATGTGCCGATCATATTTACCTG
* *
67754935 TGGCTATGTGCCTATCATATTTA-TTG
1 TGGCTATGTGCCGATCATATTTACCTG
* * * * *
67754961 ATGACTCTATGTCGATCATATTTACCCG
1 -TGGCTATGTGCCGATCATATTTACCTG
* *
67754989 TGGCTGTGTGCCGATTATATT
1 TGGCTATGTGCCGATCATATT
67755010 GTCGTCGTTG
Statistics
Matches: 57, Mismatches: 16, Indels: 4
0.74 0.21 0.05
Matches are distributed among these distances:
26 2 0.04
27 54 0.95
28 1 0.02
ACGTcount: A:0.19, C:0.20, G:0.21, T:0.41
Consensus pattern (27 bp):
TGGCTATGTGCCGATCATATTTACCTG
Found at i:67759153 original size:27 final size:27
Alignment explanation
Indices: 67759088--67759167 Score: 101
Period size: 26 Copynumber: 3.0 Consensus size: 27
67759078 CCAATTTGTG
*
67759088 AAATTATTGAAATACCATTGTAGT-TA
1 AAATTATTGAAATACCCTTGTAGTGTA
* ***
67759114 CAATTACCAAAATACCCTTGTAGTGTA
1 AAATTATTGAAATACCCTTGTAGTGTA
67759141 AAATTATTGAAATACCCTTGT-GTGTA
1 AAATTATTGAAATACCCTTGTAGTGTA
67759167 A
1 A
67759168 NATAGGGAAA
Statistics
Matches: 44, Mismatches: 9, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
26 25 0.57
27 19 0.43
ACGTcount: A:0.39, C:0.14, G:0.12, T:0.35
Consensus pattern (27 bp):
AAATTATTGAAATACCCTTGTAGTGTA
Found at i:67759477 original size:50 final size:50
Alignment explanation
Indices: 67759421--67759552 Score: 174
Period size: 50 Copynumber: 2.6 Consensus size: 50
67759411 GTTCTGATAG
* *
67759421 GGTTGCACGGGTTGCACAAGACGATTGTGGATACAGTATTGATCTGTTAA
1 GGTTGCACGGGTCGCACGAGACGATTGTGGATACAGTATTGATCTGTTAA
* * * *
67759471 GGTTGCACGGGTCGTACGAGATGATTTTGGATCCAGTATTGATCTGTTAA
1 GGTTGCACGGGTCGCACGAGACGATTGTGGATACAGTATTGATCTGTTAA
* * * *
67759521 TGTCGCACGTGTCGCACGAGACGACTGTGGAT
1 GGTTGCACGGGTCGCACGAGACGATTGTGGAT
67759553 CGACAGATGG
Statistics
Matches: 69, Mismatches: 13, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
50 69 1.00
ACGTcount: A:0.23, C:0.17, G:0.31, T:0.30
Consensus pattern (50 bp):
GGTTGCACGGGTCGCACGAGACGATTGTGGATACAGTATTGATCTGTTAA
Found at i:67759631 original size:22 final size:22
Alignment explanation
Indices: 67759583--67759642 Score: 66
Period size: 22 Copynumber: 2.7 Consensus size: 22
67759573 CATAATCTGT
67759583 TTATGGCTCTGTGCCAGCCTAA
1 TTATGGCTCTGTGCCAGCCTAA
* * * * *
67759605 ATATGGCTCTGTGCTATCTTGA
1 TTATGGCTCTGTGCCAGCCTAA
*
67759627 TTATGGCTTTGTGCCA
1 TTATGGCTCTGTGCCA
67759643 ATCATATTTA
Statistics
Matches: 30, Mismatches: 8, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.17, C:0.22, G:0.23, T:0.38
Consensus pattern (22 bp):
TTATGGCTCTGTGCCAGCCTAA
Found at i:67759668 original size:27 final size:27
Alignment explanation
Indices: 67759630--67759731 Score: 89
Period size: 27 Copynumber: 3.8 Consensus size: 27
67759620 ATCTTGATTA
*
67759630 TGGCTTTGTGCCAATCATATTTACCTG
1 TGGCTATGTGCCAATCATATTTACCTG
* * * *
67759657 TGGCTGTGTGCCTATCATATTTA-TTAA
1 TGGCTATGTGCCAATCATATTTACCT-G
* * * *
67759684 TGACTCTGTGTCAATCATATTTACCCG
1 TGGCTATGTGCCAATCATATTTACCTG
* *
67759711 TGGCTATGTGCCGATTATATT
1 TGGCTATGTGCCAATCATATT
67759732 GTCGTCGCTG
Statistics
Matches: 57, Mismatches: 16, Indels: 4
0.74 0.21 0.05
Matches are distributed among these distances:
26 1 0.02
27 56 0.98
ACGTcount: A:0.21, C:0.20, G:0.19, T:0.41
Consensus pattern (27 bp):
TGGCTATGTGCCAATCATATTTACCTG
Found at i:67759811 original size:22 final size:22
Alignment explanation
Indices: 67759780--67759843 Score: 92
Period size: 22 Copynumber: 2.9 Consensus size: 22
67759770 ACCAATAGCC
67759780 TTGTGCCATCCTGATTATGGCT
1 TTGTGCCATCCTGATTATGGCT
*
67759802 TTGTGTCATCCTGATTATGGCT
1 TTGTGCCATCCTGATTATGGCT
* * *
67759824 CTATGCCATCATGATTATGG
1 TTGTGCCATCCTGATTATGG
67759844 TTTATAACCA
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
22 37 1.00
ACGTcount: A:0.17, C:0.20, G:0.22, T:0.41
Consensus pattern (22 bp):
TTGTGCCATCCTGATTATGGCT
Found at i:67765188 original size:46 final size:46
Alignment explanation
Indices: 67765138--67765350 Score: 417
Period size: 46 Copynumber: 4.6 Consensus size: 46
67765128 TGGTTGAGCA
*
67765138 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTTACTTATGGATGCGAATG
67765184 TCCGAACTCGTTGAGTTGAGTCCGAGTTTACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTTACTTATGGATGCGAATG
67765230 TCCGAACTCGTTGAGTTGAGTCCGAGTTTACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTTACTTATGGATGCGAATG
67765276 TCCGAACTCGTTGAGTTGAGTCCGAGTTTACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTTACTTATGGATGCGAATG
67765322 TCCGAACTCGTTGAGTTGAGTCCGAGTTT
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTT
67765351 GTGAGATGTA
Statistics
Matches: 166, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
46 166 1.00
ACGTcount: A:0.21, C:0.18, G:0.28, T:0.32
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTTACTTATGGATGCGAATG
Found at i:67765372 original size:46 final size:45
Alignment explanation
Indices: 67765138--67765403 Score: 385
Period size: 46 Copynumber: 5.8 Consensus size: 45
67765128 TGGTTGAGCA
*
67765138 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTTACTTA-GGATGCGAATG
67765184 TCCGAACTCGTTGAGTTGAGTCCGAGTTTACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTTACTTA-GGATGCGAATG
67765230 TCCGAACTCGTTGAGTTGAGTCCGAGTTTACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTTACTTA-GGATGCGAATG
67765276 TCCGAACTCGTTGAGTTGAGTCCGAGTTTACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTTACTTA-GGATGCGAATG
* * *
67765322 TCCGAACTCGTTGAGTTGAGTCCGAGTTT-GTGA-GATG-TAATAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTTACTTAGGATGCGAAT--G
* *
67765366 CATCCGAACTTGTTGAGTTGAGTCCGAGTTCACTTAGG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTTACTTAGG
67765404 GGTGGGTTAC
Statistics
Matches: 206, Mismatches: 8, Indels: 10
0.92 0.04 0.04
Matches are distributed among these distances:
42 3 0.01
43 4 0.02
44 1 0.00
45 2 0.01
46 193 0.94
47 2 0.01
48 1 0.00
ACGTcount: A:0.22, C:0.18, G:0.29, T:0.32
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTTACTTAGGATGCGAATG
Found at i:67768346 original size:40 final size:40
Alignment explanation
Indices: 67768257--67768440 Score: 209
Period size: 40 Copynumber: 4.7 Consensus size: 40
67768247 TTGAATGATG
* *
67768257 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTAAGTGAC-AAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAT
* *
67768295 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAT
*
67768336 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
67768375 TCCGGGTTAAGTCCCGAAGGCAATTGTGCGAGTTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
67768414 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
67768441 AACGAGGAGC
Statistics
Matches: 124, Mismatches: 14, Indels: 13
0.82 0.09 0.09
Matches are distributed among these distances:
39 54 0.44
40 61 0.49
41 9 0.07
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.24
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
Found at i:67768392 original size:79 final size:81
Alignment explanation
Indices: 67768257--67768440 Score: 220
Period size: 79 Copynumber: 2.3 Consensus size: 81
67768247 TTGAATGATG
*
67768257 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTAAGTGACAATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACAATATCCGGACTAAGATCCGAAGGCAAT
67768320 TGTGCGAGATACTA-A
66 TGTGCGAGATACTATA
* * **
67768335 TTCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAA-ATCCGGGTTAAG-TCCCGAAGGC
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGAC-AATATCCGGACTAAGAT-CCGAAGGC
*
67768396 AATTGTGCGAGTTACTATA
63 AATTGTGCGAGATACTATA
* *
67768415 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
67768441 AACGAGGAGC
Statistics
Matches: 91, Mismatches: 8, Indels: 11
0.83 0.07 0.10
Matches are distributed among these distances:
78 10 0.11
79 58 0.64
80 23 0.25
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.24
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACAATATCCGGACTAAGATCCGAAGGCAAT
TGTGCGAGATACTATA
Found at i:67768462 original size:79 final size:79
Alignment explanation
Indices: 67768309--67768473 Score: 192
Period size: 79 Copynumber: 2.1 Consensus size: 79
67768299 GGACTAAGAT
* * ** *
67768309 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCAATTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTGACTAA
*
67768374 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* *
67768388 CCGAAGGCAATTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-GAGC
1 CCGAAGGCAATTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTGA-C
* *
67768451 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
67768467 CCGAAGG
1 CCGAAGG
67768474 TACGTGATTT
Statistics
Matches: 73, Mismatches: 10, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
78 2 0.03
79 46 0.63
80 25 0.34
ACGTcount: A:0.27, C:0.21, G:0.28, T:0.24
Consensus pattern (79 bp):
CCGAAGGCAATTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTGACTAA
ATCCGGGTTAAATC
Found at i:67776347 original size:79 final size:81
Alignment explanation
Indices: 67776211--67776395 Score: 236
Period size: 79 Copynumber: 2.3 Consensus size: 81
67776201 TTGAATGATG
*
67776211 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
67776275 TGTGCGAGATACTA-A
66 TGTGCGAGATACTATA
* * * **
67776290 TTCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
*
67776352 TTTGTGCGAGTTACTATA
64 TTTGTGCGAGATACTATA
* *
67776370 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
67776396 AACGAGGAGC
Statistics
Matches: 92, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 1 0.01
79 58 0.63
80 33 0.36
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGATACTATA
Found at i:67776409 original size:40 final size:40
Alignment explanation
Indices: 67776212--67776395 Score: 216
Period size: 40 Copynumber: 4.6 Consensus size: 40
67776202 TGAATGATGT
* * * *
67776212 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* * *
67776252 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-A
67776292 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
67776330 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
67776371 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
67776396 AACGAGGAGC
Statistics
Matches: 126, Mismatches: 11, Indels: 14
0.83 0.07 0.09
Matches are distributed among these distances:
39 35 0.28
40 81 0.64
41 10 0.08
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:67776417 original size:79 final size:79
Alignment explanation
Indices: 67776212--67776428 Score: 201
Period size: 79 Copynumber: 2.7 Consensus size: 79
67776202 TGAATGATGT
** * * * **
67776212 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGAT-CCGAAGGCATT
1 CCGGGCTAAG-CCCGAAGGCATTTGAAC-GAGTGACTAAATCCGGGTTAA-ATCCCGAAGGCATT
*
67776275 TGTGCGAGATACTAATT
63 TGTGCGAGATACTAATA
** * *
67776292 CCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTGT
1 CCGGGCTAAGCCCGAAGGCATTTGAACGAGTGACTAAATCCGGGTTAAATCCCGAAGGCATTTGT
*
67776357 GCGAGTTACT-ATAA
66 GCGAGATACTAAT-A
* * *
67776371 CCGGGCTATGTCCCGAAGGCATTTGAACGAG-GAGCTATATCC-GGTTAAATTCCGAAGG
1 CCGGGCTAAG-CCCGAAGGCATTTGAACGAGTGA-CTAAATCCGGGTTAAATCCCGAAGG
67776429 TACGTGATTT
Statistics
Matches: 116, Mismatches: 16, Indels: 11
0.81 0.11 0.08
Matches are distributed among these distances:
78 3 0.03
79 71 0.61
80 42 0.36
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.24
Consensus pattern (79 bp):
CCGGGCTAAGCCCGAAGGCATTTGAACGAGTGACTAAATCCGGGTTAAATCCCGAAGGCATTTGT
GCGAGATACTAATA
Found at i:67792244 original size:27 final size:27
Alignment explanation
Indices: 67792213--67792390 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
67792203 TAAATTGTAC
67792213 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
67792240 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
67792266 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
67792294 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
67792322 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
67792349 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
67792376 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
67792391 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:67792327 original size:82 final size:81
Alignment explanation
Indices: 67792214--67792369 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
67792204 AAATTGTACA
* *
67792214 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
67792278 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
67792295 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
67792360 TGCGAGTTGA
65 TGCGAATTGA
67792370 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:67792381 original size:82 final size:81
Alignment explanation
Indices: 67792210--67792390 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
67792200 GATTAAATTG
* *
67792210 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
67792275 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
67792291 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
67792355 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
67792373 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
67792391 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:67809625 original size:27 final size:27
Alignment explanation
Indices: 67809594--67809771 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
67809584 TAAATTGTAC
67809594 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
67809621 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
67809647 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
67809675 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
67809703 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
67809730 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
67809757 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
67809772 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:67809708 original size:82 final size:81
Alignment explanation
Indices: 67809595--67809750 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
67809585 AAATTGTACA
* *
67809595 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
67809659 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
67809676 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
67809741 TGCGAGTTGA
65 TGCGAATTGA
67809751 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:67809762 original size:82 final size:81
Alignment explanation
Indices: 67809591--67809771 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
67809581 GATTAAATTG
* *
67809591 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
67809656 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
67809672 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
67809736 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
67809754 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
67809772 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:67812418 original size:69 final size:69
Alignment explanation
Indices: 67812303--67812439 Score: 240
Period size: 69 Copynumber: 2.0 Consensus size: 69
67812293 AGGCTTTTCC
67812303 ATGATTGCTACTTAGTTGACGAAATTGCTTTAGAAAGATGTAAAATTTGAATGGTCTGAAAAGTG
1 ATGATTGCTACTTAGTTGACGAAATTGCTTTAGAAAGATGTAAAATTTGAATGGTCTGAAAAGTG
67812368 TCAA
66 TCAA
* *
67812372 ATGATTGCTACTTCGTTGACGAAATTG-TTTCAGAAAGATGTGAAATTTGAATGGTCTGAAAAGT
1 ATGATTGCTACTTAGTTGACGAAATTGCTTT-AGAAAGATGTAAAATTTGAATGGTCTGAAAAGT
67812436 GTCA
65 GTCA
67812440 GAAAAGCTTT
Statistics
Matches: 65, Mismatches: 2, Indels: 2
0.94 0.03 0.03
Matches are distributed among these distances:
68 3 0.05
69 62 0.95
ACGTcount: A:0.34, C:0.09, G:0.23, T:0.34
Consensus pattern (69 bp):
ATGATTGCTACTTAGTTGACGAAATTGCTTTAGAAAGATGTAAAATTTGAATGGTCTGAAAAGTG
TCAA
Found at i:67824263 original size:49 final size:49
Alignment explanation
Indices: 67824204--67824389 Score: 219
Period size: 50 Copynumber: 3.7 Consensus size: 49
67824194 ATCTGGTATG
* *
67824204 CATAGTAGCCTGCACATAGTACTACACATGCGACCAATTATCCGGTACA
1 CATAGTAGCCTGCACTTAGTACTACACACGCGACCAATTATCCGGTACA
* ** * *
67824253 CATAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATCTGATACA
1 CATAGTAGCCTGCACTTAGTACTACACACGCGACC-AATTATCCGGTACA
* * * * *
67824303 CGTAGTAGCCTGCACTTAGTACTACAACACGTGATCGAAGTTATCGGGTACG
1 CATAGTAGCCTGCACTTAGTACTAC-ACACGCGA-CCAA-TTATCCGGTACA
*
67824355 CATAGTAGCCTGCACTTAGTACTACACATGCGACC
1 CATAGTAGCCTGCACTTAGTACTACACACGCGACC
67824390 TCACAATAGA
Statistics
Matches: 115, Mismatches: 18, Indels: 7
0.82 0.13 0.05
Matches are distributed among these distances:
49 32 0.28
50 35 0.30
51 16 0.14
52 32 0.28
ACGTcount: A:0.30, C:0.28, G:0.18, T:0.24
Consensus pattern (49 bp):
CATAGTAGCCTGCACTTAGTACTACACACGCGACCAATTATCCGGTACA
Found at i:67824390 original size:102 final size:99
Alignment explanation
Indices: 67824206--67824390 Score: 271
Period size: 102 Copynumber: 1.8 Consensus size: 99
67824196 CTGGTATGCA
*
67824206 TAGTAGCCTGCACATAGTACTACACATGCGACCAATTATCCGGTACACATAGTAGCCTGCACTTA
1 TAGTAGCCTGCACATAGTACTACACACGCGACCAATTATCCGGTACACATAGTAGCCTGCACTTA
*
67824271 GTACTACACACGTGACCTAACCATCTGATACACG
66 GTACTACACACGCGACCTAACCATCTGATACACG
* * * * *
67824305 TAGTAGCCTGCACTTAGTACTACAACACGTGATCGAAGTTATCGGGTACGCATAGTAGCCTGCAC
1 TAGTAGCCTGCACATAGTACTAC-ACACGCGA-CCAA-TTATCCGGTACACATAGTAGCCTGCAC
*
67824370 TTAGTACTACACATGCGACCT
63 TTAGTACTACACACGCGACCT
67824391 CACAATAGAT
Statistics
Matches: 75, Mismatches: 8, Indels: 3
0.87 0.09 0.03
Matches are distributed among these distances:
99 22 0.29
100 6 0.08
101 3 0.04
102 44 0.59
ACGTcount: A:0.30, C:0.28, G:0.18, T:0.24
Consensus pattern (99 bp):
TAGTAGCCTGCACATAGTACTACACACGCGACCAATTATCCGGTACACATAGTAGCCTGCACTTA
GTACTACACACGCGACCTAACCATCTGATACACG
Found at i:67831574 original size:27 final size:25
Alignment explanation
Indices: 67831514--67831577 Score: 67
Period size: 27 Copynumber: 2.4 Consensus size: 25
67831504 GGATGTACTG
67831514 CATTAGTGGCCTTGCCACATTCTAC
1 CATTAGTGGCCTTGCCACATTCTAC
*
67831539 CGTTCTAGTGGCCTTGCCACGCATTCTGA-
1 C-AT-TAGTGGCCTTGCCA--CATTCT-AC
67831568 CATTAGTGGC
1 CATTAGTGGC
67831578 TACGCCACGA
Statistics
Matches: 32, Mismatches: 2, Indels: 8
0.76 0.05 0.19
Matches are distributed among these distances:
25 1 0.03
26 1 0.03
27 21 0.66
28 1 0.03
29 7 0.22
30 1 0.03
ACGTcount: A:0.17, C:0.30, G:0.22, T:0.31
Consensus pattern (25 bp):
CATTAGTGGCCTTGCCACATTCTAC
Found at i:67832526 original size:43 final size:43
Alignment explanation
Indices: 67832435--67832516 Score: 112
Period size: 43 Copynumber: 1.9 Consensus size: 43
67832425 TTATTTAAAA
** *
67832435 AAAACGCCGCTAAAGGTCAAGACCTTTAGCGGCGCTTTTCCCG
1 AAAACGCCGCTAAAAATCAAGACCTTTAGCGGCACTTTTCCCG
*
67832478 TAAACGCCGCTAAAAATCATA-ACCTTTAGCGGCACTTTT
1 AAAACGCCGCTAAAAATCA-AGACCTTTAGCGGCACTTTT
67832517 TTTGAAAACG
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
43 33 0.97
44 1 0.03
ACGTcount: A:0.29, C:0.28, G:0.18, T:0.24
Consensus pattern (43 bp):
AAAACGCCGCTAAAAATCAAGACCTTTAGCGGCACTTTTCCCG
Found at i:67832585 original size:22 final size:24
Alignment explanation
Indices: 67832560--67832603 Score: 65
Period size: 22 Copynumber: 1.9 Consensus size: 24
67832550 AAAAAATTAT
67832560 TAAATAATAT-TTAT-TTTTATGA
1 TAAATAATATATTATGTTTTATGA
*
67832582 TAAATATTATATTATGTTTTAT
1 TAAATAATATATTATGTTTTAT
67832604 TTTTGAAATT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 9 0.47
23 4 0.21
24 6 0.32
ACGTcount: A:0.39, C:0.00, G:0.05, T:0.57
Consensus pattern (24 bp):
TAAATAATATATTATGTTTTATGA
Found at i:67834563 original size:3 final size:3
Alignment explanation
Indices: 67834555--67834586 Score: 64
Period size: 3 Copynumber: 10.7 Consensus size: 3
67834545 GCTTTAACAT
67834555 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT
67834587 TGTTACCAAT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
ATA
Found at i:67837828 original size:7 final size:7
Alignment explanation
Indices: 67837812--67837907 Score: 72
Period size: 7 Copynumber: 13.3 Consensus size: 7
67837802 CATGGAATAT
67837812 AACCCATA
1 AACCC-TA
67837820 AACCCTA
1 AACCCTA
67837827 AACCCTTA
1 AACCC-TA
67837835 AACCCCT-
1 AA-CCCTA
*
67837842 AACCTTA
1 AACCCTA
67837849 AACCCT-
1 AACCCTA
67837855 AACCCTTA
1 AACCC-TA
*
67837863 AACCATA
1 AACCCTA
* *
67837870 AATCATA
1 AACCCTA
67837877 AACCCTA
1 AACCCTA
67837884 AA-CCTA
1 AACCCTA
67837890 TAACCCATA
1 -AACCC-TA
*
67837899 AACCTTA
1 AACCCTA
67837906 AA
1 AA
67837908 ATAGTAACTC
Statistics
Matches: 73, Mismatches: 7, Indels: 17
0.75 0.07 0.18
Matches are distributed among these distances:
6 12 0.16
7 36 0.49
8 20 0.27
9 5 0.07
ACGTcount: A:0.45, C:0.35, G:0.00, T:0.20
Consensus pattern (7 bp):
AACCCTA
Found at i:67837836 original size:8 final size:8
Alignment explanation
Indices: 67837812--67837866 Score: 57
Period size: 8 Copynumber: 7.5 Consensus size: 8
67837802 CATGGAATAT
*
67837812 AACCCATA
1 AACCCTTA
67837820 AACCC-TA
1 AACCCTTA
67837827 AACCCTTA
1 AACCCTTA
*
67837835 AACCCCT-
1 AACCCTTA
67837842 AA-CCTTA
1 AACCCTTA
67837849 AACCC-T-
1 AACCCTTA
67837855 AACCCTTA
1 AACCCTTA
67837863 AACC
1 AACC
67837867 ATAAATCATA
Statistics
Matches: 40, Mismatches: 2, Indels: 10
0.77 0.04 0.19
Matches are distributed among these distances:
6 8 0.20
7 13 0.32
8 19 0.47
ACGTcount: A:0.40, C:0.42, G:0.00, T:0.18
Consensus pattern (8 bp):
AACCCTTA
Found at i:67837878 original size:28 final size:28
Alignment explanation
Indices: 67837810--67837907 Score: 99
Period size: 28 Copynumber: 3.4 Consensus size: 28
67837800 ATCATGGAAT
*
67837810 ATAACCCATAAACCCTAAACCCTTAAACCC
1 ATAAACCATAAACCCT-AACCCTTAAA-CC
* *
67837840 CT-AACCTTAAACCCTAACCCTTAAACC
1 ATAAACCATAAACCCTAACCCTTAAACC
* * *
67837867 ATAAATCATAAACCCTAAACCTATAACCC
1 ATAAACCATAAACCCTAACCCT-TAAACC
*
67837896 ATAAACCTTAAA
1 ATAAACCATAAA
67837908 ATAGTAACTC
Statistics
Matches: 56, Mismatches: 10, Indels: 5
0.79 0.14 0.07
Matches are distributed among these distances:
27 3 0.05
28 26 0.46
29 26 0.46
30 1 0.02
ACGTcount: A:0.45, C:0.35, G:0.00, T:0.20
Consensus pattern (28 bp):
ATAAACCATAAACCCTAACCCTTAAACC
Found at i:67837892 original size:22 final size:21
Alignment explanation
Indices: 67837842--67837907 Score: 62
Period size: 22 Copynumber: 3.1 Consensus size: 21
67837832 TTAAACCCCT
* *
67837842 AACCTTAAACCCT-AACCCTTA
1 AACCATAAACCATAAACCC-TA
*
67837863 AACCATAAATCATAAACCCTA
1 AACCATAAACCATAAACCCTA
* *
67837884 AACCTATAACCCATAAACCTTA
1 AACC-ATAAACCATAAACCCTA
67837906 AA
1 AA
67837908 ATAGTAACTC
Statistics
Matches: 37, Mismatches: 6, Indels: 3
0.80 0.13 0.07
Matches are distributed among these distances:
21 16 0.43
22 21 0.57
ACGTcount: A:0.47, C:0.32, G:0.00, T:0.21
Consensus pattern (21 bp):
AACCATAAACCATAAACCCTA
Found at i:67837915 original size:22 final size:22
Alignment explanation
Indices: 67837849--67837930 Score: 55
Period size: 22 Copynumber: 3.8 Consensus size: 22
67837839 CCTAACCTTA
*
67837849 AACCC-TAACCCTTAAACCATA-
1 AACCCATAAACCTTAAA-CATAT
* * *
67837870 AA-TCATAAACCCTAAACCTAT
1 AACCCATAAACCTTAAACATAT
67837891 AACCCATAAACCTTAAA-ATAGT
1 AACCCATAAACCTTAAACATA-T
* * *
67837913 AACTCTTAAATCTTAAAC
1 AACCCATAAACCTTAAAC
67837931 CCTAAACCGT
Statistics
Matches: 46, Mismatches: 10, Indels: 8
0.72 0.16 0.12
Matches are distributed among these distances:
20 4 0.09
21 15 0.33
22 27 0.59
ACGTcount: A:0.46, C:0.28, G:0.01, T:0.24
Consensus pattern (22 bp):
AACCCATAAACCTTAAACATAT
Found at i:67838181 original size:41 final size:41
Alignment explanation
Indices: 67838126--67838368 Score: 265
Period size: 41 Copynumber: 5.9 Consensus size: 41
67838116 CGGTGTTTTT
* * * *
67838126 CAAAAGCACTGCTAAAACCTCGATCTATAGCGGTGTTTCTC
1 CAAAAGCGCCGCTAAAACCTCGACCTATAGCGGCGTTTCTC
* * * *
67838167 CAAAAGTGCCGCTAAAAGCTTGACCTATAGCGGCGCTTCTC
1 CAAAAGCGCCGCTAAAACCTCGACCTATAGCGGCGTTTCTC
* *
67838208 CAAAAGCGCCGCTAAAACCTCGACCTATAGCGACGTTTTTC
1 CAAAAGCGCCGCTAAAACCTCGACCTATAGCGGCGTTTCTC
* * * *
67838249 TAGAAGCGCCACTAAAACCTCGACCTATAGCGGCGTTTTTC
1 CAAAAGCGCCGCTAAAACCTCGACCTATAGCGGCGTTTCTC
* *
67838290 CAGAAA-CGCCACTAAAACCTCGACCTATAGCAGCGGTTT-TC
1 CA-AAAGCGCCGCTAAAACCTCGACCTATAGCGGC-GTTTCTC
* * * * *
67838331 TAGAAGCGTCGCTAAAACCTCGATCTATAGCAGCGTTT
1 CAAAAGCGCCGCTAAAACCTCGACCTATAGCGGCGTTT
67838369 GGACCAAAAA
Statistics
Matches: 173, Mismatches: 26, Indels: 7
0.84 0.13 0.03
Matches are distributed among these distances:
40 6 0.03
41 161 0.93
42 6 0.03
ACGTcount: A:0.29, C:0.29, G:0.19, T:0.23
Consensus pattern (41 bp):
CAAAAGCGCCGCTAAAACCTCGACCTATAGCGGCGTTTCTC
Found at i:67838368 original size:123 final size:123
Alignment explanation
Indices: 67838137--67838361 Score: 308
Period size: 123 Copynumber: 1.8 Consensus size: 123
67838127 AAAAGCACTG
* * * * * * *
67838137 CTAAAACCTCGATCTATAGCGGTGTTTCTCCAAAAGTGCCGCTAAAAGCTTGACCTATAGCGGCG
1 CTAAAACCTCGACCTATAGCGGCGTTTCTCCAAAAGCGCCACTAAAACCTCGACCTATAGCAGCG
67838202 CTTCTCCAAAAGCGCCGCTAAAACCTCGACCTATAGCGACGTTTTTCTAGAAGCGCCA
66 CTTCTCCAAAAGCGCCGCTAAAACCTCGACCTATAGCGACGTTTTTCTAGAAGCGCCA
*
67838260 CTAAAACCTCGACCTATAGCGGCGTTTTTCCAGAAA-CGCCACTAAAACCTCGACCTATAGCAGC
1 CTAAAACCTCGACCTATAGCGGCGTTTCTCCA-AAAGCGCCACTAAAACCTCGACCTATAGCAGC
* * * * * *
67838324 GGTTTTCTAGAAGCGTCGCTAAAACCTCGATCTATAGC
65 GCTTCTCCAAAAGCGCCGCTAAAACCTCGACCTATAGC
67838362 AGCGTTTGGA
Statistics
Matches: 87, Mismatches: 14, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
123 84 0.97
124 3 0.03
ACGTcount: A:0.28, C:0.29, G:0.19, T:0.24
Consensus pattern (123 bp):
CTAAAACCTCGACCTATAGCGGCGTTTCTCCAAAAGCGCCACTAAAACCTCGACCTATAGCAGCG
CTTCTCCAAAAGCGCCGCTAAAACCTCGACCTATAGCGACGTTTTTCTAGAAGCGCCA
Found at i:67838420 original size:41 final size:41
Alignment explanation
Indices: 67838358--67838440 Score: 130
Period size: 41 Copynumber: 2.0 Consensus size: 41
67838348 CCTCGATCTA
* *
67838358 TAGCAGCGTTTGGACCAAAAACGCTGCTATTGCTCAGTTTT
1 TAGCAGCGTTTGGACCAAAAACGCCGCTATTGCTCAATTTT
* *
67838399 TAGCGGCGTTTTGACCAAAAACGCCGCTATTGCTCAATTTT
1 TAGCAGCGTTTGGACCAAAAACGCCGCTATTGCTCAATTTT
67838440 T
1 T
67838441 TTGGCGTTTT
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
41 38 1.00
ACGTcount: A:0.24, C:0.23, G:0.20, T:0.33
Consensus pattern (41 bp):
TAGCAGCGTTTGGACCAAAAACGCCGCTATTGCTCAATTTT
Found at i:67840551 original size:54 final size:54
Alignment explanation
Indices: 67840465--67840631 Score: 192
Period size: 55 Copynumber: 3.1 Consensus size: 54
67840455 ATTAGGGTTT
* *
67840465 AAGGATACCAAGTAAGACCATGCCAAGGCATGGCATTGGTAAGTTTTATAAGGC
1 AAGGAAACCATGTAAGACCATGCCAAGGCATGGCATTGGTAAGTTTTATAAGGC
* * * * * **
67840519 AAGGAAATCATGTAAGACCATGTCAAGACATGGCATTGATAAACTACTATAAGGC
1 AAGGAAACCATGTAAGACCATGCCAAGGCATGGCATTGGT-AAGTTTTATAAGGC
* ** * *
67840574 AAAGATCCCATGTAAGACCATGCCAAGGCATGGCAATGGTAAG-TTCATAAGGC
1 AAGGAAACCATGTAAGACCATGCCAAGGCATGGCATTGGTAAGTTTTATAAGGC
67840627 AAGGA
1 AAGGA
67840632 TAACAGGCAA
Statistics
Matches: 90, Mismatches: 22, Indels: 3
0.78 0.19 0.03
Matches are distributed among these distances:
53 11 0.12
54 36 0.40
55 43 0.48
ACGTcount: A:0.38, C:0.17, G:0.24, T:0.20
Consensus pattern (54 bp):
AAGGAAACCATGTAAGACCATGCCAAGGCATGGCATTGGTAAGTTTTATAAGGC
Found at i:67843147 original size:43 final size:43
Alignment explanation
Indices: 67843099--67843206 Score: 146
Period size: 43 Copynumber: 2.5 Consensus size: 43
67843089 TATCGAGATG
* * *
67843099 TGATTACATGTAAGACCATGTCTAGGACGTTGGCATTG-TATTT
1 TGATTACGTGTAAGACCATGTCTAGGACATTGGCATTGTTA-TA
*
67843142 TGATTACGTGTAAGACCATGTCTGGGACATTGGCATTGTTATA
1 TGATTACGTGTAAGACCATGTCTAGGACATTGGCATTGTTATA
* *
67843185 TGATTTCGTGTAAGACCCTGTC
1 TGATTACGTGTAAGACCATGTC
67843207 CGGGATAGTG
Statistics
Matches: 58, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
43 56 0.97
44 2 0.03
ACGTcount: A:0.24, C:0.16, G:0.24, T:0.36
Consensus pattern (43 bp):
TGATTACGTGTAAGACCATGTCTAGGACATTGGCATTGTTATA
Found at i:67847218 original size:26 final size:26
Alignment explanation
Indices: 67847187--67847294 Score: 189
Period size: 26 Copynumber: 4.2 Consensus size: 26
67847177 TGAAATGCCC
*
67847187 ATCATGGAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAACCCATT
67847213 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* *
67847239 ATCATGGAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAACCCATT
67847265 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
67847291 ATCA
1 ATCA
67847295 ATTTGTACCA
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 77 1.00
ACGTcount: A:0.36, C:0.24, G:0.07, T:0.32
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:67849658 original size:110 final size:110
Alignment explanation
Indices: 67849465--67849673 Score: 418
Period size: 110 Copynumber: 1.9 Consensus size: 110
67849455 GAAAATCCTA
67849465 CCTTGAGTTTCTAAGGGTACATCCCTATACAGTTTGTCTACCCTAACCGAGTGACCCAAAGGACT
1 CCTTGAGTTTCTAAGGGTACATCCCTATACAGTTTGTCTACCCTAACCGAGTGACCCAAAGGACT
67849530 TAGTACAGATACCCCACTCACAATCTCCTCAGAGTCCAAGTTGTT
66 TAGTACAGATACCCCACTCACAATCTCCTCAGAGTCCAAGTTGTT
67849575 CCTTGAGTTTCTAAGGGTACATCCCTATACAGTTTGTCTACCCTAACCGAGTGACCCAAAGGACT
1 CCTTGAGTTTCTAAGGGTACATCCCTATACAGTTTGTCTACCCTAACCGAGTGACCCAAAGGACT
67849640 TAGTACAGATACCCCACTCACAATCTCCTCAGAG
66 TAGTACAGATACCCCACTCACAATCTCCTCAGAG
67849674 CAGTCCAAGT
Statistics
Matches: 99, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
110 99 1.00
ACGTcount: A:0.28, C:0.30, G:0.16, T:0.26
Consensus pattern (110 bp):
CCTTGAGTTTCTAAGGGTACATCCCTATACAGTTTGTCTACCCTAACCGAGTGACCCAAAGGACT
TAGTACAGATACCCCACTCACAATCTCCTCAGAGTCCAAGTTGTT
Found at i:67854650 original size:17 final size:17
Alignment explanation
Indices: 67854628--67854667 Score: 71
Period size: 17 Copynumber: 2.4 Consensus size: 17
67854618 TCAGATAAGA
67854628 CCCTTTGTATATAATAT
1 CCCTTTGTATATAATAT
67854645 CCCTTTGTATATAATAT
1 CCCTTTGTATATAATAT
*
67854662 CTCTTT
1 CCCTTT
67854668 CAAAAGTTGA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
17 22 1.00
ACGTcount: A:0.25, C:0.20, G:0.05, T:0.50
Consensus pattern (17 bp):
CCCTTTGTATATAATAT
Found at i:67856144 original size:26 final size:25
Alignment explanation
Indices: 67856106--67856174 Score: 86
Period size: 24 Copynumber: 2.8 Consensus size: 25
67856096 GACTCACTGT
*
67856106 AGCTCGTATGAGCTTACTGATATATC
1 AGCTCGTAAGAGCTTACTGAT-TATC
*
67856132 AGCTCGTAAGAGCTTACT-ATTCTC
1 AGCTCGTAAGAGCTTACTGATTATC
* *
67856156 AACTCGTCAGAGCTTACTG
1 AGCTCGTAAGAGCTTACTG
67856175 TTTCCAGCTC
Statistics
Matches: 38, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
24 19 0.50
25 2 0.05
26 17 0.45
ACGTcount: A:0.26, C:0.23, G:0.19, T:0.32
Consensus pattern (25 bp):
AGCTCGTAAGAGCTTACTGATTATC
Found at i:67856185 original size:24 final size:23
Alignment explanation
Indices: 67856106--67856197 Score: 71
Period size: 24 Copynumber: 3.7 Consensus size: 23
67856096 GACTCACTGT
67856106 AGCTCGTATGAGCTTACTGATATAT-C
1 AGCTCGTA-GAGCTTACTG-T-T-TCC
*
67856132 AGCTCGTAAGAGCTTACT-ATTCTC
1 AGCTCGT-AGAGCTTACTGTTTC-C
*
67856156 AACTCGTCAGAGCTTACTGTTTCC
1 AGCTCGT-AGAGCTTACTGTTTCC
*
67856180 AGCTCGATAGAGCATACT
1 AGCTCG-TAGAGCTTACT
67856198 ATTCATAGCT
Statistics
Matches: 55, Mismatches: 6, Indels: 12
0.75 0.08 0.16
Matches are distributed among these distances:
22 1 0.02
23 1 0.02
24 32 0.58
25 4 0.07
26 16 0.29
27 1 0.02
ACGTcount: A:0.26, C:0.24, G:0.18, T:0.32
Consensus pattern (23 bp):
AGCTCGTAGAGCTTACTGTTTCC
Found at i:67857985 original size:40 final size:39
Alignment explanation
Indices: 67857887--67858149 Score: 278
Period size: 40 Copynumber: 6.6 Consensus size: 39
67857877 TCCTCGTTCA
* * * *
67857887 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC
1 AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
* *
67857926 AATGCCTTCGGGACATAACCCGGATTTAATAACTCGCAC
1 AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
*
67857965 GAATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCAC
1 -AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
*
67858005 GAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCAC
1 -AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
* * *
67858045 AAAGGCCTTCGGGGCTTAACCCGGAATTT-GTATCTCGCAC
1 -AATGCCTTCGGGACTTAACCCGG-ATTTAGTAACTCGCAC
** * * * *
67858085 AAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCAC
1 -AATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCAC
* *
67858126 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
67858150 CAGCATTCAA
Statistics
Matches: 197, Mismatches: 21, Indels: 11
0.86 0.09 0.05
Matches are distributed among these distances:
39 40 0.20
40 145 0.74
41 12 0.06
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.25
Consensus pattern (39 bp):
AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
Found at i:67858109 original size:120 final size:119
Alignment explanation
Indices: 67857887--67858149 Score: 307
Period size: 120 Copynumber: 2.2 Consensus size: 119
67857877 TCCTCGTTCA
* * *
67857887 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACACAATGCCTTCGGGACATAACCCGGATT
1 AATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCACACAAGGCCTTCGGGACATAACCCGGATT
* * *
67857952 TAATAACTCGCACGAATGCCTTCGGGACTTAACCCGGATTTAATAAC-TCGCAC
66 TAATAACTCGCACAAATGCCTTCGGGACTTAACCCGGATATAATAACTTAGCAC
* * * * *
67858005 GAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACAAAGGCCTTCGGGGCTTAACCCGGA
1 -AATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCACAC-AAGGCCTTCGGGACATAACCCGG-
* * ** * *
67858070 ATTT-GTATCTCGCACAAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCAC
63 ATTTAATAACTCGCACAAATGCCTTCGGGA-CTTAACCCGGATATAATAACTTAGCAC
*
67858126 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
67858150 CAGCATTCAA
Statistics
Matches: 121, Mismatches: 19, Indels: 7
0.82 0.13 0.05
Matches are distributed among these distances:
119 37 0.31
120 75 0.62
121 9 0.07
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.25
Consensus pattern (119 bp):
AATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCACACAAGGCCTTCGGGACATAACCCGGATT
TAATAACTCGCACAAATGCCTTCGGGACTTAACCCGGATATAATAACTTAGCAC
Found at i:67858158 original size:41 final size:41
Alignment explanation
Indices: 67858081--67858158 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
67858071 TTTGTATCTC
* * *
67858081 GCACAAATGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
67858122 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAATGCCTTC-GGATCTTAGCCCGGACA-CATTCA
67858159 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (41 bp):
GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:67865977 original size:40 final size:40
Alignment explanation
Indices: 67865833--67865964 Score: 194
Period size: 40 Copynumber: 3.3 Consensus size: 40
67865823 GCTCCTCGTT
* * * *
67865833 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACA
1 CAAATGCCTTCGGGACATAACCCGGATTTAATAACTCGCA
67865873 C-AATGCCTTCGGGACATAACCCGGATTTAATAACTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATTTAATAACTCGCA
* * *
67865912 CGAATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATTTAATAACTCGCA
67865952 CAAATGCCTTCGG
1 CAAATGCCTTCGG
67865965 ATCTTAGTCC
Statistics
Matches: 84, Mismatches: 7, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
39 35 0.42
40 49 0.58
ACGTcount: A:0.29, C:0.28, G:0.20, T:0.23
Consensus pattern (40 bp):
CAAATGCCTTCGGGACATAACCCGGATTTAATAACTCGCA
Found at i:67869952 original size:71 final size:67
Alignment explanation
Indices: 67869875--67870016 Score: 185
Period size: 67 Copynumber: 2.1 Consensus size: 67
67869865 TCACCAGATA
* * * *
67869875 CAGATATTGTGGCTAGGCCACCAGAACAGATATATATATATGGGGAAGCCACCAGATTGCAGCGA
1 CAGATATTGTGACGAAGCCACCAGAACAG----ATATATATGGCGAAGCCACCAGATTGCAGCGA
67869940 GGCTGC
62 GGCTGC
* * *
67869946 CAGATATTGTGACGAAGTCACCAGAACAGATATATGTGGCGAGGCCACCAGATTGCAGCGAGGCT
1 CAGATATTGTGACGAAGCCACCAGAACAGATATATATGGCGAAGCCACCAGATTGCAGCGAGGCT
67870011 GC
66 GC
67870013 CAGA
1 CAGA
67870017 ACGCTTCCTC
Statistics
Matches: 64, Mismatches: 7, Indels: 4
0.85 0.09 0.05
Matches are distributed among these distances:
67 39 0.61
71 25 0.39
ACGTcount: A:0.31, C:0.22, G:0.29, T:0.18
Consensus pattern (67 bp):
CAGATATTGTGACGAAGCCACCAGAACAGATATATATGGCGAAGCCACCAGATTGCAGCGAGGCT
GC
Found at i:67869994 original size:27 final size:26
Alignment explanation
Indices: 67869946--67869997 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
67869936 GCGAGGCTGC
*
67869946 CAGATATTGTGACGAAGTCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
* *
67869972 CAGATATATGTGGCGAGGCCACCAGA
1 CAGATAT-TGTGACGAAGCCACCAGA
67869998 TTGCAGCGAG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.35, C:0.21, G:0.27, T:0.17
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:67891814 original size:21 final size:20
Alignment explanation
Indices: 67891790--67891828 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 20
67891780 AAACTTGTAT
*
67891790 ATCTATCAACAAACATTCATA
1 ATCTAACAACAAAC-TTCATA
*
67891811 ATCTAACAAGAAACTTCA
1 ATCTAACAACAAACTTCA
67891829 AAACACATGC
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 4 0.25
21 12 0.75
ACGTcount: A:0.49, C:0.23, G:0.03, T:0.26
Consensus pattern (20 bp):
ATCTAACAACAAACTTCATA
Found at i:67892529 original size:30 final size:30
Alignment explanation
Indices: 67892495--67892551 Score: 96
Period size: 30 Copynumber: 1.9 Consensus size: 30
67892485 TTAATGAAGC
*
67892495 TTAGTAAGTTTGACAGCTTAAACAAAAAGT
1 TTAGTAAGTTCGACAGCTTAAACAAAAAGT
*
67892525 TTAGTAAGTTCGACAGGTTAAACAAAA
1 TTAGTAAGTTCGACAGCTTAAACAAAA
67892552 GCTTATCAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.44, C:0.11, G:0.18, T:0.28
Consensus pattern (30 bp):
TTAGTAAGTTCGACAGCTTAAACAAAAAGT
Found at i:67892840 original size:21 final size:21
Alignment explanation
Indices: 67892811--67892853 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
67892801 TGAATATGCC
* * *
67892811 AACAGAAGCTTGTAAGAGCTT
1 AACAAAAGCTCGTAAAAGCTT
67892832 AACAAAAGCTCGTAAAAGCTT
1 AACAAAAGCTCGTAAAAGCTT
67892853 A
1 A
67892854 TCCACCCAGT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.44, C:0.16, G:0.19, T:0.21
Consensus pattern (21 bp):
AACAAAAGCTCGTAAAAGCTT
Found at i:67901382 original size:20 final size:19
Alignment explanation
Indices: 67901359--67901423 Score: 51
Period size: 20 Copynumber: 3.3 Consensus size: 19
67901349 AAGCTCAAAC
67901359 GAGCTAAAGTAAGCTAAATT
1 GAGCTAAAGT-AGCTAAATT
67901379 GAGCTCAAACG-AGCTAAATT
1 GAGCT-AAA-GTAGCTAAATT
* * * *
67901399 AAGCTCATGTGAGCTAAATC
1 GAGCTAAAGT-AGCTAAATT
67901419 GAGCT
1 GAGCT
67901424 GGGAAAAACT
Statistics
Matches: 36, Mismatches: 5, Indels: 8
0.73 0.10 0.16
Matches are distributed among these distances:
18 1 0.03
19 1 0.03
20 30 0.83
21 3 0.08
22 1 0.03
ACGTcount: A:0.38, C:0.17, G:0.22, T:0.23
Consensus pattern (19 bp):
GAGCTAAAGTAGCTAAATT
Found at i:67902713 original size:17 final size:18
Alignment explanation
Indices: 67902691--67902724 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
67902681 ACAACACTCC
*
67902691 TTTCTT-CTTCACTCTCG
1 TTTCTTCCTTCAATCTCG
67902708 TTTCTTCCTTCAATCTC
1 TTTCTTCCTTCAATCTC
67902725 ACTCTCTTTT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.09, C:0.35, G:0.03, T:0.53
Consensus pattern (18 bp):
TTTCTTCCTTCAATCTCG
Found at i:67903071 original size:12 final size:12
Alignment explanation
Indices: 67903028--67903129 Score: 52
Period size: 13 Copynumber: 8.0 Consensus size: 12
67903018 TTTTTTTAAC
67903028 TCGATTTTTTTT
1 TCGATTTTTTTT
67903040 GTC-ACTTTTTTTT
1 -TCGA-TTTTTTTT
*
67903053 TC---CTTTTTT
1 TCGATTTTTTTT
67903062 TCGATTTTTTTT
1 TCGATTTTTTTT
67903074 T-GAATTTTTTTTT
1 TCG-A-TTTTTTTT
67903087 TCTGAATCAATTTTTTT
1 TC-G-AT---TTTTTTT
67903104 TCGAATTTTTTTTT
1 TCG-A-TTTTTTTT
*
67903118 TTGATTTTTTTT
1 TCGATTTTTTTT
67903130 GTTACTCCAA
Statistics
Matches: 74, Mismatches: 3, Indels: 25
0.73 0.03 0.25
Matches are distributed among these distances:
9 8 0.11
11 1 0.01
12 19 0.26
13 20 0.27
14 10 0.14
15 3 0.04
16 3 0.04
17 10 0.14
ACGTcount: A:0.12, C:0.09, G:0.07, T:0.73
Consensus pattern (12 bp):
TCGATTTTTTTT
Found at i:67903084 original size:15 final size:15
Alignment explanation
Indices: 67903066--67903129 Score: 69
Period size: 14 Copynumber: 4.3 Consensus size: 15
67903056 TTTTTTTCGA
67903066 TTTTTTTTTGAATTT
1 TTTTTTTTTGAATTT
* **
67903081 TTTTTTTCTGAATCAA
1 TTTTTTTTTGAAT-TT
*
67903097 TTTTTTTTCGAA-TT
1 TTTTTTTTTGAATTT
67903111 TTTTTTTTTG-ATTT
1 TTTTTTTTTGAATTT
67903125 TTTTT
1 TTTTT
67903130 GTTACTCCAA
Statistics
Matches: 39, Mismatches: 8, Indels: 5
0.75 0.15 0.10
Matches are distributed among these distances:
13 1 0.03
14 16 0.41
15 12 0.31
16 10 0.26
ACGTcount: A:0.14, C:0.05, G:0.06, T:0.75
Consensus pattern (15 bp):
TTTTTTTTTGAATTT
Found at i:67904154 original size:20 final size:20
Alignment explanation
Indices: 67904131--67904184 Score: 63
Period size: 20 Copynumber: 2.7 Consensus size: 20
67904121 AGCTAAAGTA
67904131 AGCTAAATTTAGCTCACATG
1 AGCTAAATTTAGCTCACATG
* ***
67904151 AGCTTAATTTAGCTCGTTTG
1 AGCTAAATTTAGCTCACATG
*
67904171 AGCTCAATTTAGCT
1 AGCTAAATTTAGCT
67904185 GGGAAAAACT
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 29 1.00
ACGTcount: A:0.28, C:0.19, G:0.17, T:0.37
Consensus pattern (20 bp):
AGCTAAATTTAGCTCACATG
Found at i:67907656 original size:48 final size:48
Alignment explanation
Indices: 67907585--67907681 Score: 178
Period size: 48 Copynumber: 2.0 Consensus size: 48
67907575 ATTGCAAAGA
67907585 TATCTTAATGCGGTTGTTATAATTGGGTATTTCATTA-TGATTTTTCTC
1 TATCTTAATGCGGTTGTTATAATTGGGTATTTCA-TAGTGATTTTTCTC
67907633 TATCTTAATGCGGTTGTTATAATTGGGTATTTCATAGTGATTTTTCTC
1 TATCTTAATGCGGTTGTTATAATTGGGTATTTCATAGTGATTTTTCTC
67907681 T
1 T
67907682 GGTATTATAT
Statistics
Matches: 48, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
47 2 0.04
48 46 0.96
ACGTcount: A:0.21, C:0.10, G:0.18, T:0.52
Consensus pattern (48 bp):
TATCTTAATGCGGTTGTTATAATTGGGTATTTCATAGTGATTTTTCTC
Found at i:67910428 original size:19 final size:19
Alignment explanation
Indices: 67910399--67910440 Score: 61
Period size: 19 Copynumber: 2.3 Consensus size: 19
67910389 TTAGATTAGT
*
67910399 TTAAG-TAATTAATGTGTC
1 TTAAGTTAATTAATATGTC
67910417 TTAAGTTAATTAATATGTC
1 TTAAGTTAATTAATATGTC
67910436 -TAAGT
1 TTAAGT
67910441 ATTTTCGGCA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
18 10 0.45
19 12 0.55
ACGTcount: A:0.36, C:0.05, G:0.14, T:0.45
Consensus pattern (19 bp):
TTAAGTTAATTAATATGTC
Found at i:67911261 original size:11 final size:11
Alignment explanation
Indices: 67911227--67911262 Score: 54
Period size: 11 Copynumber: 3.3 Consensus size: 11
67911217 CTCCTATGCT
67911227 AGGAAACTTCA
1 AGGAAACTTCA
* *
67911238 AAGAACCTTCA
1 AGGAAACTTCA
67911249 AGGAAACTTCA
1 AGGAAACTTCA
67911260 AGG
1 AGG
67911263 GATGCTCTAG
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
11 21 1.00
ACGTcount: A:0.44, C:0.19, G:0.19, T:0.17
Consensus pattern (11 bp):
AGGAAACTTCA
Found at i:67911413 original size:7 final size:7
Alignment explanation
Indices: 67911401--67911426 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
67911391 TTAAGACTTT
67911401 TTGTTGA
1 TTGTTGA
67911408 TTGTTGA
1 TTGTTGA
67911415 TTGTTGA
1 TTGTTGA
67911422 TTGTT
1 TTGTT
67911427 TATAACATTT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.12, C:0.00, G:0.27, T:0.62
Consensus pattern (7 bp):
TTGTTGA
Found at i:67919540 original size:16 final size:17
Alignment explanation
Indices: 67919509--67919541 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
67919499 TTCCTAAGTA
67919509 TATATCAATCATTTCAT
1 TATATCAATCATTTCAT
67919526 TATATCAAT-ATTTCAT
1 TATATCAATCATTTCAT
67919542 GCTCCACCAT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 7 0.44
17 9 0.56
ACGTcount: A:0.36, C:0.15, G:0.00, T:0.48
Consensus pattern (17 bp):
TATATCAATCATTTCAT
Found at i:67919967 original size:92 final size:91
Alignment explanation
Indices: 67919827--67920100 Score: 415
Period size: 92 Copynumber: 3.0 Consensus size: 91
67919817 TTTGACATGA
* *
67919827 TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTC-TATCATGTTGCCATGGTATCTTTCAA
1 TGCCATGGTATCTTTCAACTATGGTCTTACTC-TTTTCATATCA-GTTGCCATGGTATCTTTCAA
*
67919891 TCATGGTCTTACATATTTCATATCAGGT
64 CCATGGTCTTACATATTTCATATCAGGT
* * *
67919919 TGCCATGGTATCTTGCAACTATGGTCTTATTCTTTTCATGTCACGTTGCCATGGTATCTTTCAAC
1 TGCCATGGTATCTTTCAACTATGGTCTTACTCTTTTCATATCA-GTTGCCATGGTATCTTTCAAC
67919984 CATGGTCTTACATATTTCATATCAGGT
65 CATGGTCTTACATATTTCATATCAGGT
* * *
67920011 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGATTGCCATGGTATCTTTCAAC
1 TGCCATGGTATCTTTCAACTATGGTCTTACTCTTTTCATATCAG-TTGCCATGGTATCTTTCAAC
*
67920076 CATGGTCTTACACATTTCATATCAG
65 CATGGTCTTACATATTTCATATCAG
67920101 AGAGCACACT
Statistics
Matches: 166, Mismatches: 14, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
91 6 0.04
92 160 0.96
ACGTcount: A:0.23, C:0.22, G:0.15, T:0.41
Consensus pattern (91 bp):
TGCCATGGTATCTTTCAACTATGGTCTTACTCTTTTCATATCAGTTGCCATGGTATCTTTCAACC
ATGGTCTTACATATTTCATATCAGGT
Found at i:67920101 original size:46 final size:45
Alignment explanation
Indices: 67919827--67920100 Score: 370
Period size: 46 Copynumber: 6.0 Consensus size: 45
67919817 TTTGACATGA
* * * *
67919827 TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTC-TATCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCATATCA-GT
* *
67919873 TGCCATGGTATCTTTCAATCATGGTCTTACATATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCA-GT
* * ** * *
67919919 TGCCATGGTATCTTGCAACTATGGTCTTATTCTTTTCATGTCACGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCA-GT
*
67919965 TGCCATGGTATCTTTCAACCATGGTCTTACATATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCA-GT
67920011 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGAT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG-T
67920057 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
67920101 AGAGCACACT
Statistics
Matches: 201, Mismatches: 25, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
45 5 0.02
46 196 0.98
ACGTcount: A:0.23, C:0.22, G:0.15, T:0.41
Consensus pattern (45 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGT
Found at i:67921614 original size:53 final size:53
Alignment explanation
Indices: 67921534--67921638 Score: 167
Period size: 53 Copynumber: 2.0 Consensus size: 53
67921524 ATCATTCTGA
** *
67921534 CCTTGTCTCACAAAAGTTATTGTATCTCATGATTTACAATTCTATTTCTTACG
1 CCTTGTCTCACAAAAGTTATCATATCTCATGATTTACAATTCCATTTCTTACG
67921587 CCTTGTCTCACAAAA-TTCATCATATCTCATGATTTACAATTCCATTTCTTAC
1 CCTTGTCTCACAAAAGTT-ATCATATCTCATGATTTACAATTCCATTTCTTAC
67921639 ATCATTTCTT
Statistics
Matches: 48, Mismatches: 3, Indels: 2
0.91 0.06 0.04
Matches are distributed among these distances:
52 2 0.04
53 46 0.96
ACGTcount: A:0.28, C:0.24, G:0.07, T:0.42
Consensus pattern (53 bp):
CCTTGTCTCACAAAAGTTATCATATCTCATGATTTACAATTCCATTTCTTACG
Found at i:67924189 original size:28 final size:28
Alignment explanation
Indices: 67924129--67924206 Score: 84
Period size: 28 Copynumber: 2.8 Consensus size: 28
67924119 ATTGTTCTGG
*
67924129 AAAAAATAAATTTGACAAGATGGGATAT
1 AAAAAATAAATTTGACGAGATGGGATAT
* * * * *
67924157 GAAAAATAAATTTGACGTGATGTGTTCT
1 AAAAAATAAATTTGACGAGATGGGATAT
* *
67924185 AAAAAATTATTTTGACGAGATG
1 AAAAAATAAATTTGACGAGATG
67924207 AATTTTGTTT
Statistics
Matches: 40, Mismatches: 10, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
28 40 1.00
ACGTcount: A:0.45, C:0.05, G:0.19, T:0.31
Consensus pattern (28 bp):
AAAAAATAAATTTGACGAGATGGGATAT
Found at i:67928089 original size:18 final size:18
Alignment explanation
Indices: 67928063--67928099 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
67928053 GGATATATAT
* *
67928063 ATAAGGGTTAGGATACGC
1 ATAAAGGTTAAGATACGC
67928081 ATAAAGGTTAAGATACGC
1 ATAAAGGTTAAGATACGC
67928099 A
1 A
67928100 CATTGTATAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.41, C:0.11, G:0.27, T:0.22
Consensus pattern (18 bp):
ATAAAGGTTAAGATACGC
Found at i:67929675 original size:30 final size:30
Alignment explanation
Indices: 67929630--67929695 Score: 89
Period size: 30 Copynumber: 2.2 Consensus size: 30
67929620 AACTGTTATA
* *
67929630 AAAAACTAGAAAAAAATATTAATTAA-ATT
1 AAAAACTAAAAAAAAATATTAAATAATATT
67929659 AAAAACTAAAATAAAAATATTAAATAATATT
1 AAAAACTAAAA-AAAAATATTAAATAATATT
67929690 AGAAAA
1 A-AAAA
67929696 ATGAAATTAA
Statistics
Matches: 32, Mismatches: 2, Indels: 3
0.86 0.05 0.08
Matches are distributed among these distances:
29 10 0.31
30 14 0.44
31 4 0.12
32 4 0.12
ACGTcount: A:0.68, C:0.03, G:0.03, T:0.26
Consensus pattern (30 bp):
AAAAACTAAAAAAAAATATTAAATAATATT
Found at i:67933392 original size:19 final size:20
Alignment explanation
Indices: 67933368--67933412 Score: 56
Period size: 19 Copynumber: 2.3 Consensus size: 20
67933358 AGAATAATAT
* *
67933368 TTTTTTATTCATTTTATT-A
1 TTTTTTAATCATATTATTAA
*
67933387 TTTTTTAATGATATTATTAA
1 TTTTTTAATCATATTATTAA
67933407 TTTTTT
1 TTTTTT
67933413 TCTAGGTTTA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
19 15 0.68
20 7 0.32
ACGTcount: A:0.24, C:0.02, G:0.02, T:0.71
Consensus pattern (20 bp):
TTTTTTAATCATATTATTAA
Found at i:67933973 original size:9 final size:9
Alignment explanation
Indices: 67933959--67933984 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
67933949 AGTTGTTGAT
67933959 TGGATTGGA
1 TGGATTGGA
67933968 TGGATTGGA
1 TGGATTGGA
67933977 TGGATTGG
1 TGGATTGG
67933985 TTGAATTAGG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.19, C:0.00, G:0.46, T:0.35
Consensus pattern (9 bp):
TGGATTGGA
Found at i:67934325 original size:19 final size:19
Alignment explanation
Indices: 67934303--67934350 Score: 55
Period size: 18 Copynumber: 2.6 Consensus size: 19
67934293 ATGAAAATTA
67934303 ATAAAAGTTATAA-AAAAAT
1 ATAAAA-TTATAATAAAAAT
*
67934322 AT-AAATTTTAATAAAAAT
1 ATAAAATTATAATAAAAAT
*
67934340 ATAAAAATATA
1 ATAAAATTATA
67934351 TTTAAGAATT
Statistics
Matches: 24, Mismatches: 3, Indels: 4
0.77 0.10 0.13
Matches are distributed among these distances:
17 5 0.21
18 11 0.46
19 8 0.33
ACGTcount: A:0.67, C:0.00, G:0.02, T:0.31
Consensus pattern (19 bp):
ATAAAATTATAATAAAAAT
Found at i:67935470 original size:132 final size:132
Alignment explanation
Indices: 67935228--67935475 Score: 302
Period size: 132 Copynumber: 1.9 Consensus size: 132
67935218 AGAGAGTATG
* * * *
67935228 AGTGAAATTCTAAAGGAATCTTCGATCATTTTGGACAAACAGGAAATCGCAACCCAGCACGATAA
1 AGTGAAATTCAAAAGGAACCTTCGATCATTTTGAACAAACAGGAAATCGCAACCCAACACGATAA
* * * *
67935293 GGCACGATTCCCTGAATTGCCAAACATCGAATATTACCTTAGTTTTGAAGAGTTTTTAGAAAACA
66 GGCACGATTCCCTGAATTGCCAAACATCGAACATCACCCTAGTTTTAAAGAGTTTTTAGAAAACA
67935358 TA
131 TA
* * * * *
67935360 AGTGAAATTCAAAAGGGACCTTTGATTATTTTGAACAAAC-GAGAAATTGCAACCCAACACGTTA
1 AGTGAAATTCAAAAGGAACCTTCGATCATTTTGAACAAACAG-GAAATCGCAACCCAACACGATA
* * * * *
67935424 GGGCACGATTCCAC-GAATTGCCACATATCGAACATCGCCCTCGTTTTAAAGA
65 AGGCACGATTCC-CTGAATTGCCAAACATCGAACATCACCCTAGTTTTAAAGA
67935476 ATTCTTAAAT
Statistics
Matches: 96, Mismatches: 18, Indels: 4
0.81 0.15 0.03
Matches are distributed among these distances:
131 1 0.01
132 94 0.98
133 1 0.01
ACGTcount: A:0.36, C:0.21, G:0.18, T:0.25
Consensus pattern (132 bp):
AGTGAAATTCAAAAGGAACCTTCGATCATTTTGAACAAACAGGAAATCGCAACCCAACACGATAA
GGCACGATTCCCTGAATTGCCAAACATCGAACATCACCCTAGTTTTAAAGAGTTTTTAGAAAACA
TA
Found at i:67936659 original size:18 final size:18
Alignment explanation
Indices: 67936632--67936672 Score: 55
Period size: 18 Copynumber: 2.3 Consensus size: 18
67936622 AAATAAATAG
*
67936632 ATATATATATAGTTACAT
1 ATATAGATATAGTTACAT
* *
67936650 GTATAGATATATTTACAT
1 ATATAGATATAGTTACAT
67936668 ATATA
1 ATATA
67936673 AATGAAAGTA
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.44, C:0.05, G:0.07, T:0.44
Consensus pattern (18 bp):
ATATAGATATAGTTACAT
Found at i:67938410 original size:168 final size:168
Alignment explanation
Indices: 67938132--67938678 Score: 792
Period size: 168 Copynumber: 3.3 Consensus size: 168
67938122 TTTTCTTCAA
* * * * * * *
67938132 GTAGCTTCAATATGCTCCACTGCAACTTCA-GAGAGGCAAGATCTTACAATCTTCGGCTTGTTGC
1 GTAGCTTAAATCTGCTTCACTGCAACTTCAGGA-AGACAAGATTTTGCAATCTTCGGCCTGTTGC
* * *
67938196 CCTACTACTTAGAGGGTTAAGGCTTGTTTTCTTCGATCTTCTCCACTGGAGACGAGATCTGCAAT
65 CCTACTACTTAGGGGGTTAAGGCTCGTTTTCTTCGATCTGCTCCACTGGAGACGAGATCTGCAAT
*
67938261 CTTCAGCCTACTTTACTACAACTTTAGGGAGATAGGATG
130 CTTCAGCCTACTTCACTACAACTTTAGGGAGATAGGATG
* *
67938300 GTAGCTTAAATCTGCTTCACTGCAACTTCAGGAAGACAAGATTTTGCAATATTCGACCTGTTGCC
1 GTAGCTTAAATCTGCTTCACTGCAACTTCAGGAAGACAAGATTTTGCAATCTTCGGCCTGTTGCC
* *
67938365 CTACTACTTAGGGGGTTAAGACTCGTTTTCTTCGATCTGCTCCACTGGAGACGAGATCTGTAATC
66 CTACTACTTAGGGGGTTAAGGCTCGTTTTCTTCGATCTGCTCCACTGGAGACGAGATCTGCAATC
67938430 TTCAGCCTA-TTCCACTACAACTTTAGGGAGATAGGATG
131 TTCAGCCTACTT-CACTACAACTTTAGGGAGATAGGATG
* * * * * * *
67938468 GTGGTTTACATCTACTTCATTTCAACTCCAGGAAGACAAGATTTTGCAATCTTCGGCCTGTTGCC
1 GTAGCTTAAATCTGCTTCACTGCAACTTCAGGAAGACAAGATTTTGCAATCTTCGGCCTGTTGCC
67938533 CTACTACTTAGGGGGTTAAGGCTCGTTTTCTTCGATCTGCTCCACTGGAGACGAGATCTGCAATC
66 CTACTACTTAGGGGGTTAAGGCTCGTTTTCTTCGATCTGCTCCACTGGAGACGAGATCTGCAATC
* *
67938598 TTCAGGCTACTCCACTACAACTTTAGGGAGATAGGATG
131 TTCAGCCTACTTCACTACAACTTTAGGGAGATAGGATG
* * * * * *
67938636 GTGGCTTGAATCTGTTTCACTGCAACCTCATGAAGACTAGATT
1 GTAGCTTAAATCTGCTTCACTGCAACTTCAGGAAGACAAGATT
67938679 CACCGTCTTT
Statistics
Matches: 337, Mismatches: 39, Indels: 6
0.88 0.10 0.02
Matches are distributed among these distances:
167 2 0.01
168 332 0.99
169 3 0.01
ACGTcount: A:0.24, C:0.23, G:0.21, T:0.31
Consensus pattern (168 bp):
GTAGCTTAAATCTGCTTCACTGCAACTTCAGGAAGACAAGATTTTGCAATCTTCGGCCTGTTGCC
CTACTACTTAGGGGGTTAAGGCTCGTTTTCTTCGATCTGCTCCACTGGAGACGAGATCTGCAATC
TTCAGCCTACTTCACTACAACTTTAGGGAGATAGGATG
Found at i:67950574 original size:131 final size:130
Alignment explanation
Indices: 67950338--67950659 Score: 414
Period size: 131 Copynumber: 2.4 Consensus size: 130
67950328 TCGCAACCCA
* * * *
67950338 GCACGATTCCCTGAATTGCCAAACATCGAATATTACCTTCGTTTTGAAGAGTTTTTAGAAAACAT
1 GCACGATTCCC-GAATTGCCAAATATCGAATATCACCTTCGTTTTAAAGAATTTTTA-AAAACAT
* * * *
67950403 AAGTGAAATTCAAAAGGGACCTTTAATTATTTTGAACAAACGAGAAATTGCAACCCAGCACGATA
64 AAGTAAAATTCAAAAGGGACCTTCAACTATTTTGAACAAACGAGAAATTGCAACCCAACACGATA
67950468 GG
129 GG
* * *
67950470 GCACGATTCCGCGAATTGCCAAATATTGAACATCGCCTTCG-TTTAAAGAATTTTTAAAAGACAT
1 GCACGATTCC-CGAATTGCCAAATATCGAATATCACCTTCGTTTTAAAGAATTTTTAAAA-ACAT
* * * * **
67950534 -GGCTAAAATTCTAAAGGGACCTTCGACTATTTTGAGCAAACGAGAAATTGCAACCCAACACTTT
64 AAG-TAAAATTCAAAAGGGACCTTCAACTATTTTGAACAAACGAGAAATTGCAACCCAACACGAT
67950598 AGG
128 AGG
*
67950601 GCACGATTCCACGAATTGCCAAATATCGAATATCACCTTCGTTTTAAAGAATTCTTAAA
1 GCACGATTCC-CGAATTGCCAAATATCGAATATCACCTTCGTTTTAAAGAATTTTTAAA
67950660 TAATTGTGAA
Statistics
Matches: 164, Mismatches: 22, Indels: 8
0.85 0.11 0.04
Matches are distributed among these distances:
130 4 0.02
131 109 0.66
132 50 0.30
133 1 0.01
ACGTcount: A:0.36, C:0.20, G:0.16, T:0.28
Consensus pattern (130 bp):
GCACGATTCCCGAATTGCCAAATATCGAATATCACCTTCGTTTTAAAGAATTTTTAAAAACATAA
GTAAAATTCAAAAGGGACCTTCAACTATTTTGAACAAACGAGAAATTGCAACCCAACACGATAGG
Done.