Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr9
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 91122320
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2661692 characters in sequence are not A, C, G, or T
File 21 of 279
Found at i:6853344 original size:28 final size:29
Alignment explanation
Indices: 6853284--6853347 Score: 94
Period size: 28 Copynumber: 2.2 Consensus size: 29
6853274 GCTGGATGGG
* * *
6853284 CCATATGAATGTGATTTGGGCCTATTGGG
1 CCATATGAATGAGATTTGGGCCTAGTGGA
6853313 CCATATGAATGAGA-TTGGGCCTAGTGGA
1 CCATATGAATGAGATTTGGGCCTAGTGGA
6853341 CCATATG
1 CCATATG
6853348 CATGTACGTA
Statistics
Matches: 32, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
28 19 0.59
29 13 0.41
ACGTcount: A:0.25, C:0.16, G:0.30, T:0.30
Consensus pattern (29 bp):
CCATATGAATGAGATTTGGGCCTAGTGGA
Found at i:6856647 original size:27 final size:26
Alignment explanation
Indices: 6856617--6856696 Score: 99
Period size: 27 Copynumber: 3.0 Consensus size: 26
6856607 GAATCTCAAA
*
6856617 TCTGTAGGCTAGTATTACTGAAATACC
1 TCTGTAGG-TAGAATTACTGAAATACC
*
6856644 TCTGTATGGTAGAATTACTGAAATACT
1 TCTGTA-GGTAGAATTACTGAAATACC
*
6856671 TCTATAGGGTAGAATTACTG-AATACC
1 TCTGTA-GGTAGAATTACTGAAATACC
6856697 CTTGGTTTAC
Statistics
Matches: 47, Mismatches: 5, Indels: 3
0.85 0.09 0.05
Matches are distributed among these distances:
26 5 0.11
27 40 0.85
28 2 0.04
ACGTcount: A:0.33, C:0.15, G:0.19, T:0.34
Consensus pattern (26 bp):
TCTGTAGGTAGAATTACTGAAATACC
Found at i:6856723 original size:27 final size:27
Alignment explanation
Indices: 6856683--6857083 Score: 216
Period size: 27 Copynumber: 14.9 Consensus size: 27
6856673 TATAGGGTAG
* * *
6856683 AATTACTG-AATACCCTTGGTTTACAA
1 AATTACAGAAATACCCTTGATTTGCAA
* * * *
6856709 AATTACAAAAATACCCTCGATTAGAAA
1 AATTACAGAAATACCCTTGATTTGCAA
* * *
6856736 AATGAACA-AAATACCCCT-AGTTTGTAA
1 AAT-TACAGAAATACCCTTGA-TTTGCAA
* *
6856763 AATTACCA-AAATACCCCTGGTTT-CTAA
1 AATTA-CAGAAATACCCTTGATTTGC-AA
* **
6856790 AATTACCA-AAATA-CCTCTAATTTGTGA
1 AATTA-CAGAAATACCCT-TGATTTGCAA
* * *
6856817 AATTATC-GAAATACCCTTAACTTGTAA
1 AATTA-CAGAAATACCCTTGATTTGCAA
* * *
6856844 AATTACCA-AAATA-CCTTCAACTTGTAA
1 AATTA-CAGAAATACCCTT-GATTTGCAA
* *
6856871 AATTACCGAAATA-CCTTCGATTTGTAA
1 AATTACAGAAATACCCTT-GATTTGCAA
* *
6856898 AATTACCA-AAATACCCCTGATTTGGAA
1 AATTA-CAGAAATACCCTTGATTTGCAA
* *
6856925 AATTAC-GAAATACCCTTAATTTGGAA
1 AATTACAGAAATACCCTTGATTTGCAA
* * *
6856951 AATTATAGAAATACCCCTGATTTACAA
1 AATTACAGAAATACCCTTGATTTGCAA
* * * *
6856978 AATTATAGAAATACCCCTAATTTACAA
1 AATTACAGAAATACCCTTGATTTGCAA
* **
6857005 AATTATAGAAATACCCTTGACTTTTAAA
1 AATTACAGAAATACCCTTGA-TTTGCAA
* * * *
6857033 AATTATAGAAATACCATTGGTTTCCAA
1 AATTACAGAAATACCCTTGATTTGCAA
* *
6857060 AATTACCGAAATACCCTTGGTTTG
1 AATTACAGAAATACCCTTGATTTG
6857084 TAGATTTACC
Statistics
Matches: 307, Mismatches: 50, Indels: 35
0.78 0.13 0.09
Matches are distributed among these distances:
26 38 0.12
27 236 0.77
28 33 0.11
ACGTcount: A:0.41, C:0.19, G:0.09, T:0.31
Consensus pattern (27 bp):
AATTACAGAAATACCCTTGATTTGCAA
Found at i:6856845 original size:54 final size:54
Alignment explanation
Indices: 6856742--6857009 Score: 256
Period size: 54 Copynumber: 5.0 Consensus size: 54
6856732 GAAAAATGAA
* * * ** *
6856742 CAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCCTGGTTTCTAAAATTAC
1 CAAAATACCCCTAATTTGTAAAATTACCGAAATACCCTTAATTTGTAAAATTAC
* * * *
6856796 CAAAATACCTCTAATTTGTGAAATTATCGAAATACCCTTAACTTGTAAAATTAC
1 CAAAATACCCCTAATTTGTAAAATTACCGAAATACCCTTAATTTGTAAAATTAC
* * *
6856850 CAAAATA-CCTTCAACTTGTAAAATTACCGAAATA-CCTTCGATTTGTAAAATTAC
1 CAAAATACCCCT-AATTTGTAAAATTACCGAAATACCCTT-AATTTGTAAAATTAC
* * *
6856904 CAAAATACCCCTGATTTGGAAAATTA-CGAAATACCCTTAATTTGGAAAATTA-
1 CAAAATACCCCTAATTTGTAAAATTACCGAAATACCCTTAATTTGTAAAATTAC
* * ** ** * **
6856956 TAGAAATACCCCTGATTTACAAAATTATAGAAATACCCCTAATTTACAAAATTA
1 CA-AAATACCCCTAATTTGTAAAATTACCGAAATACCCTTAATTTGTAAAATTA
6857010 TAGAAATACC
Statistics
Matches: 178, Mismatches: 30, Indels: 12
0.81 0.14 0.05
Matches are distributed among these distances:
52 1 0.01
53 47 0.26
54 127 0.71
55 3 0.02
ACGTcount: A:0.42, C:0.20, G:0.08, T:0.31
Consensus pattern (54 bp):
CAAAATACCCCTAATTTGTAAAATTACCGAAATACCCTTAATTTGTAAAATTAC
Found at i:6857061 original size:55 final size:54
Alignment explanation
Indices: 6856906--6857078 Score: 172
Period size: 55 Copynumber: 3.2 Consensus size: 54
6856896 AAAATTACCA
* ** * **
6856906 AAATACCCCTGATTTGGAAAATTA-CGAAATACC-CTTAATTTGGAAAATTATAG
1 AAATACCCTTGATTTACAAAATTATAGAAATACCAC-TAATTTACAAAATTATAG
* *
6856959 AAATACCCCTGATTTACAAAATTATAGAAATACCCCTAATTTACAAAATTATAG
1 AAATACCCTTGATTTACAAAATTATAGAAATACCACTAATTTACAAAATTATAG
* ** * **
6857013 AAATACCCTTGACTTTTA-AAAATTATAGAAATACCATTGGTTTCCAAAATTACCG
1 AAATACCCTTGA--TTTACAAAATTATAGAAATACCACTAATTTACAAAATTATAG
6857068 AAATACCCTTG
1 AAATACCCTTG
6857079 GTTTGTAGAT
Statistics
Matches: 103, Mismatches: 13, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
53 22 0.21
54 35 0.34
55 42 0.41
56 4 0.04
ACGTcount: A:0.42, C:0.18, G:0.09, T:0.31
Consensus pattern (54 bp):
AAATACCCTTGATTTACAAAATTATAGAAATACCACTAATTTACAAAATTATAG
Found at i:6857401 original size:41 final size:41
Alignment explanation
Indices: 6857343--6857464 Score: 190
Period size: 41 Copynumber: 3.0 Consensus size: 41
6857333 GAGGAAGAAT
* * *
6857343 TTGAGGATCGCACGGTTGCTTGATGACCGTGGATCCACCGA
1 TTGAGGATCGCATGGTTGCTTGACGATCGTGGATCCACCGA
* *
6857384 TTGAGGATCGCATGGTTGCTTGACGATTGTGGACCCACCGA
1 TTGAGGATCGCATGGTTGCTTGACGATCGTGGATCCACCGA
*
6857425 TTAAGGATCGCATGGTTGCTTGACGATCGTGGATCCACCG
1 TTGAGGATCGCATGGTTGCTTGACGATCGTGGATCCACCG
6857465 GTGGCTTTTA
Statistics
Matches: 73, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
41 73 1.00
ACGTcount: A:0.20, C:0.23, G:0.31, T:0.26
Consensus pattern (41 bp):
TTGAGGATCGCATGGTTGCTTGACGATCGTGGATCCACCGA
Found at i:6857658 original size:22 final size:22
Alignment explanation
Indices: 6857606--6857659 Score: 65
Period size: 22 Copynumber: 2.5 Consensus size: 22
6857596 GCCAATTATT
* *
6857606 CTGATTATGGCTTTGTGCCAAC
1 CTGATTATGGCTCTATGCCAAC
*
6857628 CT-ACATATGGCTCTATGCCAAC
1 CTGA-TTATGGCTCTATGCCAAC
6857650 CTGATTATGG
1 CTGATTATGG
6857660 TTGTGTGCCA
Statistics
Matches: 26, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
21 1 0.04
22 24 0.92
23 1 0.04
ACGTcount: A:0.22, C:0.24, G:0.20, T:0.33
Consensus pattern (22 bp):
CTGATTATGGCTCTATGCCAAC
Found at i:6857668 original size:22 final size:21
Alignment explanation
Indices: 6857606--6857670 Score: 60
Period size: 22 Copynumber: 3.0 Consensus size: 21
6857596 GCCAATTATT
6857606 CTGATTATGGCTTTGTGCCAAC
1 CTGATTATGG-TTTGTGCCAAC
* * *
6857628 CT-ACATATGGCTCTATGCCAAC
1 CTGA-TTATGG-TTTGTGCCAAC
6857650 CTGATTATGGTTGTGTGCCAA
1 CTGATTATGGTT-TGTGCCAA
6857671 ACGTATTTAC
Statistics
Matches: 34, Mismatches: 6, Indels: 6
0.74 0.13 0.13
Matches are distributed among these distances:
21 2 0.06
22 31 0.91
23 1 0.03
ACGTcount: A:0.22, C:0.23, G:0.22, T:0.34
Consensus pattern (21 bp):
CTGATTATGGTTTGTGCCAAC
Found at i:6860902 original size:29 final size:30
Alignment explanation
Indices: 6860860--6860950 Score: 111
Period size: 28 Copynumber: 3.2 Consensus size: 30
6860850 ACATGGCTTG
*
6860860 GAAT-TGATTCGGG-CTAGATGGGCCATAT
1 GAATGTGATTTGGGCCTAGATGGGCCATAT
*
6860888 GAATGTGATTTGGGCCTA-ATGGGTCATAT
1 GAATGTGATTTGGGCCTAGATGGGCCATAT
*
6860917 GAATGAGA-TTGGGCCTAG-TGGGCCATAT
1 GAATGTGATTTGGGCCTAGATGGGCCATAT
*
6860945 GCATGT
1 GAATGT
6860951 ATGTAGACTT
Statistics
Matches: 54, Mismatches: 6, Indels: 6
0.82 0.09 0.09
Matches are distributed among these distances:
28 26 0.48
29 25 0.46
30 3 0.06
ACGTcount: A:0.24, C:0.13, G:0.33, T:0.30
Consensus pattern (30 bp):
GAATGTGATTTGGGCCTAGATGGGCCATAT
Found at i:6860938 original size:28 final size:28
Alignment explanation
Indices: 6860865--6860945 Score: 101
Period size: 29 Copynumber: 2.8 Consensus size: 28
6860855 GCTTGGAATT
*
6860865 GATTCGGG-CTAGATGGGCCATATGAATGT
1 GATT-GGGCCTAG-TGGGCCATATGAATGA
* *
6860894 GATTTGGGCCTAATGGGTCATATGAATGA
1 GA-TTGGGCCTAGTGGGCCATATGAATGA
6860923 GATTGGGCCTAGTGGGCCATATG
1 GATTGGGCCTAGTGGGCCATATG
6860946 CATGTATGTA
Statistics
Matches: 45, Mismatches: 5, Indels: 5
0.82 0.09 0.09
Matches are distributed among these distances:
28 19 0.42
29 21 0.47
30 5 0.11
ACGTcount: A:0.23, C:0.14, G:0.35, T:0.28
Consensus pattern (28 bp):
GATTGGGCCTAGTGGGCCATATGAATGA
Found at i:6861642 original size:11 final size:11
Alignment explanation
Indices: 6861626--6861651 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
6861616 ATTGCATGTA
6861626 TGATATTATTG
1 TGATATTATTG
6861637 TGATATTATTG
1 TGATATTATTG
6861648 TGAT
1 TGAT
6861652 GTGGGCTTCG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.27, C:0.00, G:0.19, T:0.54
Consensus pattern (11 bp):
TGATATTATTG
Found at i:6862050 original size:22 final size:22
Alignment explanation
Indices: 6862025--6862071 Score: 76
Period size: 23 Copynumber: 2.1 Consensus size: 22
6862015 TGGTTTTTCC
6862025 TAAACCATAACTTTTTTTTAAA
1 TAAACCATAACTTTTTTTTAAA
*
6862047 TAAAAGCATAACTTTTTTTTAAA
1 T-AAACCATAACTTTTTTTTAAA
6862070 TA
1 TA
6862072 CTACGTTTCC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
22 2 0.09
23 21 0.91
ACGTcount: A:0.43, C:0.11, G:0.02, T:0.45
Consensus pattern (22 bp):
TAAACCATAACTTTTTTTTAAA
Found at i:6865201 original size:25 final size:25
Alignment explanation
Indices: 6865142--6865201 Score: 61
Period size: 25 Copynumber: 2.4 Consensus size: 25
6865132 AAATTTAATT
*
6865142 TTATTCAATTATCTAATTTTTCAAA
1 TTATTAAATTATCTAATTTTTCAAA
* *
6865167 TTATTGAATTAT-TAATATTTT-ATA
1 TTATTAAATTATCTAAT-TTTTCAAA
6865191 TTAATTAAATT
1 TT-ATTAAATT
6865202 TTTGAGAAAA
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
24 8 0.27
25 22 0.73
ACGTcount: A:0.38, C:0.05, G:0.02, T:0.55
Consensus pattern (25 bp):
TTATTAAATTATCTAATTTTTCAAA
Found at i:6871424 original size:39 final size:40
Alignment explanation
Indices: 6871370--6871452 Score: 141
Period size: 42 Copynumber: 2.0 Consensus size: 40
6871360 GAAGTACATA
6871370 AATGATAGATGCAAAATGG-AACACTTGTACCTTTCAAAC
1 AATGATAGATGCAAAATGGAAACACTTGTACCTTTCAAAC
6871409 AATGATAGATGCAAAATGGAACAACACTTGTACCTTTCAAAC
1 AATGATAGATGCAAAATGG-A-AACACTTGTACCTTTCAAAC
6871451 AA
1 AA
6871453 CGGCAGCATA
Statistics
Matches: 41, Mismatches: 0, Indels: 3
0.93 0.00 0.07
Matches are distributed among these distances:
39 19 0.46
42 22 0.54
ACGTcount: A:0.43, C:0.18, G:0.14, T:0.24
Consensus pattern (40 bp):
AATGATAGATGCAAAATGGAAACACTTGTACCTTTCAAAC
Found at i:6873662 original size:46 final size:45
Alignment explanation
Indices: 6873600--6873767 Score: 165
Period size: 46 Copynumber: 3.6 Consensus size: 45
6873590 TTTCGTAGCT
* *
6873600 GATGCATGTCCTAGACATGTCTTACACTGGCTTACGTCCCGAGGAC
1 GATGCATGTCCCAGACATGTCTTACACTGGCTT-CGTCCCAAGGAC
* * * * * *
6873646 GATGTATGTCCCAGACATATCTTACACTAGCATTCGTCTCAATGCC
1 GATGCATGTCCCAGACATGTCTTACACTGGC-TTCGTCCCAAGGAC
* *** * *
6873692 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATATGGCC
1 GATG-CATGTCCCAGACAT-GTCTTACACTGGCT-TCGTCCCAAGGAC
6873740 GATGCATGTCCCAGACATGTCTTACACT
1 GATGCATGTCCCAGACATGTCTTACACT
6873768 AGCCTACAAT
Statistics
Matches: 101, Mismatches: 17, Indels: 8
0.80 0.13 0.06
Matches are distributed among these distances:
46 49 0.49
47 30 0.30
48 22 0.22
ACGTcount: A:0.24, C:0.29, G:0.20, T:0.28
Consensus pattern (45 bp):
GATGCATGTCCCAGACATGTCTTACACTGGCTTCGTCCCAAGGAC
Found at i:6881146 original size:46 final size:47
Alignment explanation
Indices: 6880878--6881146 Score: 188
Period size: 46 Copynumber: 5.7 Consensus size: 47
6880868 GGGCAAGTTA
6880878 CCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCACATATCTGTG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCACA-AT-TG-G
* * * * *
6880928 TCGACGCCATGTCCCAAACATGGTCTTACACT-G---ACACATTTCGTAG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCACAATT-G--G
* * * *
6880974 CCGATG-CATGTCCTAGACAT-GTCTTACATTAGCTTACGTCCCAA--GA
1 CCGATGCCATGTCCCAGACATGGTCTTACACTAGC-T-C-TCACAATTGG
* * *
6881020 CCGATG-CTTGTCCCAGACGT-GTCTTACACTAGCACTCGTCTCAA-T-G
1 CCGATGCCATGTCCCAGACATGGTCTTACACTAG--CTC-TCACAATTGG
* *
6881066 CTGATGCCATGTCCCAGACATGGTCTTACGCTAGCTCTCACAATTTGG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCACAA-TTGG
*
6881114 CCGATG-CATGTCCCAGATAT-GTCTTACACTAGC
1 CCGATGCCATGTCCCAGACATGGTCTTACACTAGC
6881147 CCAAAATAGG
Statistics
Matches: 173, Mismatches: 29, Indels: 38
0.72 0.12 0.16
Matches are distributed among these distances:
44 10 0.06
45 20 0.12
46 64 0.37
47 27 0.16
48 19 0.11
49 1 0.01
50 29 0.17
51 3 0.02
ACGTcount: A:0.23, C:0.30, G:0.19, T:0.28
Consensus pattern (47 bp):
CCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCACAATTGG
Found at i:6882049 original size:26 final size:26
Alignment explanation
Indices: 6882020--6882069 Score: 100
Period size: 26 Copynumber: 1.9 Consensus size: 26
6882010 CTACAACTAG
6882020 TCAAAATTGGTGACATACACTTTACC
1 TCAAAATTGGTGACATACACTTTACC
6882046 TCAAAATTGGTGACATACACTTTA
1 TCAAAATTGGTGACATACACTTTA
6882070 ACTAATTTTG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.36, C:0.20, G:0.12, T:0.32
Consensus pattern (26 bp):
TCAAAATTGGTGACATACACTTTACC
Found at i:6884812 original size:49 final size:48
Alignment explanation
Indices: 6884748--6885013 Score: 203
Period size: 49 Copynumber: 5.6 Consensus size: 48
6884738 ACACCAAAGT
6884748 CGATGCCATGTCCCAGACAAGTCTTACACTAACTTTCATATATCGAGGC
1 CGATGCCATGTCCCAGACAAGTCTTACACTAACTTTCATATAT-GAGGC
* * *
6884797 CGATGCCATGTCCCAGACAAGTCTTACACTGGA-TTTCATCTATTG-GTGT
1 CGATGCCATGTCCCAGACAAGTCTTACACT-AACTTTCATATA-TGAG-GC
* * * * *
6884846 CGATGCCATGTCCCAGAC-AGTCTTACACTGAC--ACACA-AT-AAGT
1 CGATGCCATGTCCCAGACAAGTCTTACACTAACTTTCATATATGAGGC
* * * * * *
6884889 TGACGCCATGTCCCAGATAGGTCTTACACTAGCTTGT-ATATCTCGAGGC
1 CGATGCCATGTCCCAGACAAGTCTTACACTAACTT-TCATATAT-GAGGC
* ** * *
6884938 CGATG-CATGTCCCAGACATGTCTTACACTGGCTCTCATA-ATGTGGC
1 CGATGCCATGTCCCAGACAAGTCTTACACTAACTTTCATATATGAGGC
* * *
6884984 CAATG-CTTGTCCCAGACATGTCTTACACTA
1 CGATGCCATGTCCCAGACAAGTCTTACACTA
6885014 GCACACATAT
Statistics
Matches: 175, Mismatches: 29, Indels: 29
0.75 0.12 0.12
Matches are distributed among these distances:
43 17 0.10
44 12 0.07
45 1 0.01
46 35 0.20
47 5 0.03
48 40 0.23
49 63 0.36
50 2 0.01
ACGTcount: A:0.26, C:0.28, G:0.19, T:0.28
Consensus pattern (48 bp):
CGATGCCATGTCCCAGACAAGTCTTACACTAACTTTCATATATGAGGC
Found at i:6887410 original size:27 final size:27
Alignment explanation
Indices: 6887300--6887410 Score: 116
Period size: 27 Copynumber: 4.1 Consensus size: 27
6887290 AGCATGGCTG
* * *
6887300 CCAGAACAGAT-AATGTGACAAAGTCA
1 CCAGAACAGATAAATGTGGCAGAGCCA
* * *
6887326 CCAAAATAGATAATTGTGGCAGAGCCA
1 CCAGAACAGATAAATGTGGCAGAGCCA
* * *
6887353 CCAGAACAGATATATATGGCAGAGCTA
1 CCAGAACAGATAAATGTGGCAGAGCCA
* *
6887380 CCAGATCAGATAAATGTGGCATAGCCA
1 CCAGAACAGATAAATGTGGCAGAGCCA
6887407 CCAG
1 CCAG
6887411 GACGCTTCCT
Statistics
Matches: 67, Mismatches: 17, Indels: 1
0.79 0.20 0.01
Matches are distributed among these distances:
26 9 0.13
27 58 0.87
ACGTcount: A:0.41, C:0.21, G:0.22, T:0.17
Consensus pattern (27 bp):
CCAGAACAGATAAATGTGGCAGAGCCA
Found at i:6888878 original size:24 final size:24
Alignment explanation
Indices: 6888843--6888919 Score: 127
Period size: 24 Copynumber: 3.2 Consensus size: 24
6888833 TCAACACCGT
*
6888843 TCTCCCTAATCAGCTCCTAAATCC
1 TCTCCCTTATCAGCTCCTAAATCC
6888867 TCTCCCTTATCAGCTCCTAAATCC
1 TCTCCCTTATCAGCTCCTAAATCC
* *
6888891 TCTCCCTTATCAGCTCCCAAATCT
1 TCTCCCTTATCAGCTCCTAAATCC
6888915 TCTCC
1 TCTCC
6888920 TGACAGCCTT
Statistics
Matches: 50, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
24 50 1.00
ACGTcount: A:0.21, C:0.43, G:0.04, T:0.32
Consensus pattern (24 bp):
TCTCCCTTATCAGCTCCTAAATCC
Found at i:6895227 original size:27 final size:27
Alignment explanation
Indices: 6895179--6895289 Score: 129
Period size: 27 Copynumber: 4.1 Consensus size: 27
6895169 AGCATGGCTG
* *
6895179 CCAGAACAGATA-ATGTGACAGAGTCA
1 CCAGAACAGATATATGTGGCAGAGCCA
*
6895205 CCAGTAA-AGGTA-ATTGTGGCAGAGCCA
1 CCAG-AACAGATATA-TGTGGCAGAGCCA
6895232 CCAGAACAGATATATGTGGCAGAGCCA
1 CCAGAACAGATATATGTGGCAGAGCCA
* * *
6895259 CCAGATCAGATAAATGTGGCATAGCCA
1 CCAGAACAGATATATGTGGCAGAGCCA
6895286 CCAG
1 CCAG
6895290 GACGCTTCCT
Statistics
Matches: 74, Mismatches: 7, Indels: 7
0.84 0.08 0.08
Matches are distributed among these distances:
26 11 0.15
27 62 0.84
28 1 0.01
ACGTcount: A:0.37, C:0.22, G:0.25, T:0.16
Consensus pattern (27 bp):
CCAGAACAGATATATGTGGCAGAGCCA
Found at i:6895261 original size:54 final size:53
Alignment explanation
Indices: 6895179--6895289 Score: 143
Period size: 54 Copynumber: 2.1 Consensus size: 53
6895169 AGCATGGCTG
* * *
6895179 CCAGAACAGATAATGTGACAGAGTCACCAG-TAAAGGTAATTGTGGCAGAGCCA
1 CCAGAACAGATAATGTGACAGAGCCACCAGAT-AAGATAAATGTGGCAGAGCCA
* * *
6895232 CCAGAACAGATATATGTGGCAGAGCCACCAGATCAGATAAATGTGGCATAGCCA
1 CCAGAACAGATA-ATGTGACAGAGCCACCAGATAAGATAAATGTGGCAGAGCCA
6895286 CCAG
1 CCAG
6895290 GACGCTTCCT
Statistics
Matches: 50, Mismatches: 6, Indels: 3
0.85 0.10 0.05
Matches are distributed among these distances:
53 12 0.24
54 37 0.74
55 1 0.02
ACGTcount: A:0.37, C:0.22, G:0.25, T:0.16
Consensus pattern (53 bp):
CCAGAACAGATAATGTGACAGAGCCACCAGATAAGATAAATGTGGCAGAGCCA
Found at i:6896760 original size:24 final size:24
Alignment explanation
Indices: 6896722--6896798 Score: 109
Period size: 24 Copynumber: 3.2 Consensus size: 24
6896712 CCAACACCGT
* *
6896722 TCTCCCTAATTAGCTCCTAAATCC
1 TCTCCCTTATCAGCTCCTAAATCC
*
6896746 TCTCCCTTATCAGCTCTTAAATCC
1 TCTCCCTTATCAGCTCCTAAATCC
* *
6896770 TCTCCCTTATCAGCTCCCAAATCT
1 TCTCCCTTATCAGCTCCTAAATCC
6896794 TCTCC
1 TCTCC
6896799 TGACAGCCTT
Statistics
Matches: 47, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 47 1.00
ACGTcount: A:0.21, C:0.40, G:0.04, T:0.35
Consensus pattern (24 bp):
TCTCCCTTATCAGCTCCTAAATCC
Found at i:6900666 original size:15 final size:16
Alignment explanation
Indices: 6900634--6900666 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
6900624 AGAAATGTGT
6900634 ATTAATTCATAATTTA
1 ATTAATTCATAATTTA
*
6900650 ATTAATT-ATATTTTA
1 ATTAATTCATAATTTA
6900665 AT
1 AT
6900667 ACCCATTTAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 9 0.56
16 7 0.44
ACGTcount: A:0.42, C:0.03, G:0.00, T:0.55
Consensus pattern (16 bp):
ATTAATTCATAATTTA
Found at i:6908112 original size:22 final size:21
Alignment explanation
Indices: 6908087--6908130 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 21
6908077 TGATAAACCT
6908087 TAATATATA-ATTATATTTCTTA
1 TAATATATATATTA-ATTT-TTA
*
6908109 TAATTTATATATTAATTTTTA
1 TAATATATATATTAATTTTTA
6908130 T
1 T
6908131 CAACTTTGCT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
21 4 0.20
22 12 0.60
23 4 0.20
ACGTcount: A:0.39, C:0.02, G:0.00, T:0.59
Consensus pattern (21 bp):
TAATATATATATTAATTTTTA
Found at i:6909368 original size:27 final size:28
Alignment explanation
Indices: 6909346--6909450 Score: 126
Period size: 27 Copynumber: 3.9 Consensus size: 28
6909336 GTCCCCTAGT
*
6909346 TTGTAAAATTACCAAAATACCCCT-GAT
1 TTGTAAAATTACCAAAATACCCCTCGAC
* *
6909373 TTGTGAAATTACTAAAATA-CCCTCGAC
1 TTGTAAAATTACCAAAATACCCCTCGAC
* **
6909400 CTGTAAAATTATTAAAATA-CCCTCGAC
1 TTGTAAAATTACCAAAATACCCCTCGAC
*
6909427 TTGTAAAATTACCAAAGTACCCCT
1 TTGTAAAATTACCAAAATACCCCT
6909451 GATTTATAGA
Statistics
Matches: 66, Mismatches: 10, Indels: 3
0.84 0.13 0.04
Matches are distributed among these distances:
26 4 0.06
27 58 0.88
28 4 0.06
ACGTcount: A:0.39, C:0.23, G:0.09, T:0.30
Consensus pattern (28 bp):
TTGTAAAATTACCAAAATACCCCTCGAC
Found at i:6909705 original size:27 final size:27
Alignment explanation
Indices: 6909495--6909732 Score: 228
Period size: 27 Copynumber: 8.9 Consensus size: 27
6909485 AAAATTACCA
* *
6909495 AAATACCCTTGTAGGGTAGAAATACCG
1 AAATACCCCTGTAGGGTAGAAATACTG
* *
6909522 AAATACCCTTGTAGGGTAGAAATACCG
1 AAATACCCCTGTAGGGTAGAAATACTG
* *
6909549 AAATACCCCTTTTGGGTAGAAATACTG
1 AAATACCCCTGTAGGGTAGAAATACTG
* * *
6909576 AAATATCCCTGTAGGGTAAAAATACTA
1 AAATACCCCTGTAGGGTAGAAATACTG
* **
6909603 AAATACCGCTGTAGGGTA-AAATTACCA
1 AAATACCCCTGTAGGGTAGAAA-TACTG
* * * *
6909630 AAATACCCTTGTAGGATTGAAATGCTG
1 AAATACCCCTGTAGGGTAGAAATACTG
* * * *
6909657 AAATACCCCTGTAAGGTAGAATTAATA
1 AAATACCCCTGTAGGGTAGAAATACTG
* *
6909684 AAATACCCCTGTAGGGTAGAATTATTG
1 AAATACCCCTGTAGGGTAGAAATACTG
* * *
6909711 AGATACCCTTGTGGGGTA-AAAT
1 AAATACCCCTGTAGGGTAGAAAT
6909733 TACCATTTTA
Statistics
Matches: 175, Mismatches: 34, Indels: 5
0.82 0.16 0.02
Matches are distributed among these distances:
26 6 0.03
27 166 0.95
28 3 0.02
ACGTcount: A:0.37, C:0.16, G:0.20, T:0.26
Consensus pattern (27 bp):
AAATACCCCTGTAGGGTAGAAATACTG
Found at i:6909717 original size:81 final size:81
Alignment explanation
Indices: 6909495--6909722 Score: 260
Period size: 81 Copynumber: 2.8 Consensus size: 81
6909485 AAAATTACCA
* ** * *
6909495 AAATACCCTTGTAGGGTAGAAATACCGAAATACCCTTGTAGGGTAGAAATACCGAAATACCCCTT
1 AAATACCCCTGTAGGGTAGAAATACTAAAATACCCCTGTAGGGTAGAATTACCGAAATA-CCCTT
* *
6909560 -TTGGGTAGAAATACTG
65 GTAGGATAGAAATACTG
* * * * *
6909576 AAATATCCCTGTAGGGTAAAAATACTAAAATACCGCTGTAGGGTAAAATTACCAAAATACCCTTG
1 AAATACCCCTGTAGGGTAGAAATACTAAAATACCCCTGTAGGGTAGAATTACCGAAATACCCTTG
* *
6909641 TAGGATTGAAATGCTG
66 TAGGATAGAAATACTG
* * * ** *
6909657 AAATACCCCTGTAAGGTAGAATTAATAAAATACCCCTGTAGGGTAGAATTATTGAGATACCCTTG
1 AAATACCCCTGTAGGGTAGAAATACTAAAATACCCCTGTAGGGTAGAATTACCGAAATACCCTTG
6909722 T
66 T
6909723 GGGGTAAAAT
Statistics
Matches: 121, Mismatches: 25, Indels: 2
0.82 0.17 0.01
Matches are distributed among these distances:
80 5 0.04
81 116 0.96
ACGTcount: A:0.37, C:0.17, G:0.19, T:0.26
Consensus pattern (81 bp):
AAATACCCCTGTAGGGTAGAAATACTAAAATACCCCTGTAGGGTAGAATTACCGAAATACCCTTG
TAGGATAGAAATACTG
Found at i:6910282 original size:19 final size:19
Alignment explanation
Indices: 6910276--6910346 Score: 85
Period size: 19 Copynumber: 3.8 Consensus size: 19
6910266 TTACCTGATA
6910276 CTGATTCTGATTCTGTTAC
1 CTGATTCTGATTCTGTTAC
*
6910295 CT-ATTTCTTATTCTGGTT--
1 CTGA-TTCTGATTCT-GTTAC
6910313 CTGATTCTGATTCTGTTAC
1 CTGATTCTGATTCTGTTAC
*
6910332 CTGATACTGATTCTG
1 CTGATTCTGATTCTG
6910347 ATTCTGTTAC
Statistics
Matches: 44, Mismatches: 3, Indels: 10
0.77 0.05 0.18
Matches are distributed among these distances:
17 3 0.07
18 12 0.27
19 26 0.59
20 3 0.07
ACGTcount: A:0.15, C:0.20, G:0.15, T:0.49
Consensus pattern (19 bp):
CTGATTCTGATTCTGTTAC
Found at i:6910285 original size:6 final size:6
Alignment explanation
Indices: 6910248--6910433 Score: 132
Period size: 6 Copynumber: 30.3 Consensus size: 6
6910238 TTGCATTCAC
* * *
6910248 ATTCTG GTTTTG ATTCTG -TTACCTG ATACTG ATTCTG ATTCTG -TTACCT-
1 ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATT--CTG
* * *
6910297 ATTTCTT ATTCTG GTTCTG ATTCTG ATTCTG -TTACCTG ATACTG ATTCTG
1 A-TTCTG ATTCTG ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG
* * * *
6910347 ATTCTG -TTACCTA ATTCTG ATTCTG ATTTTG ATTTTG ATTCTG ATTTTG
1 ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG
* *
6910396 ATTCTG ATTCTG ATTCTC ATTTTG ATTCT- AGTTCTG AT
1 ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG A-TTCTG AT
6910434 AATGTTTCTT
Statistics
Matches: 143, Mismatches: 21, Indels: 32
0.73 0.11 0.16
Matches are distributed among these distances:
5 9 0.06
6 116 0.81
7 12 0.08
8 6 0.04
ACGTcount: A:0.17, C:0.16, G:0.15, T:0.52
Consensus pattern (6 bp):
ATTCTG
Found at i:6910318 original size:31 final size:31
Alignment explanation
Indices: 6910270--6910412 Score: 134
Period size: 31 Copynumber: 4.6 Consensus size: 31
6910260 ATTCTGTTAC
*
6910270 CTGATACTGATTCTGATTCTGTTACCTATTT
1 CTGATTCTGATTCTGATTCTGTTACCTATTT
* * * *
6910301 CTTATTCTGGTTCTGATTCTGATT--CTGTTAC
1 CTGATTCTGATTCTGATTCTG-TTACCTATT-T
* *
6910332 CTGATACTGATTCTGATTCTGTTACCTAATT
1 CTGATTCTGATTCTGATTCTGTTACCTATTT
* *
6910363 CTGATTCTGATTTTGATTTTGATT--CTGATTT
1 CTGATTCTGATTCTGATTCTG-TTACCT-ATTT
6910394 -TGATTCTGATTCTGATTCT
1 CTGATTCTGATTCTGATTCT
6910413 CATTTTGATT
Statistics
Matches: 89, Mismatches: 17, Indels: 13
0.75 0.14 0.11
Matches are distributed among these distances:
30 25 0.28
31 57 0.64
32 7 0.08
ACGTcount: A:0.17, C:0.17, G:0.15, T:0.51
Consensus pattern (31 bp):
CTGATTCTGATTCTGATTCTGTTACCTATTT
Found at i:6910341 original size:25 final size:25
Alignment explanation
Indices: 6910313--6910374 Score: 106
Period size: 25 Copynumber: 2.5 Consensus size: 25
6910303 TATTCTGGTT
*
6910313 CTGATTCTGATTCTGTTACCTGATA
1 CTGATTCTGATTCTGTTACCTAATA
*
6910338 CTGATTCTGATTCTGTTACCTAATT
1 CTGATTCTGATTCTGTTACCTAATA
6910363 CTGATTCTGATT
1 CTGATTCTGATT
6910375 TTGATTTTGA
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
25 35 1.00
ACGTcount: A:0.19, C:0.19, G:0.15, T:0.47
Consensus pattern (25 bp):
CTGATTCTGATTCTGTTACCTAATA
Found at i:6910345 original size:37 final size:37
Alignment explanation
Indices: 6910270--6910352 Score: 114
Period size: 37 Copynumber: 2.2 Consensus size: 37
6910260 ATTCTGTTAC
* * *
6910270 CTGATACTGATTCTGATTCTGTTACCTATTTCTTATT
1 CTGATTCTGATTCTGATTCTGTTACCTATTACTGATT
*
6910307 CTGGTTCTGATTCTGATTCTGTTACCTGA-TACTGATT
1 CTGATTCTGATTCTGATTCTGTTACCT-ATTACTGATT
6910344 CTGATTCTG
1 CTGATTCTG
6910353 TTACCTAATT
Statistics
Matches: 40, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
37 39 0.98
38 1 0.03
ACGTcount: A:0.17, C:0.19, G:0.16, T:0.48
Consensus pattern (37 bp):
CTGATTCTGATTCTGATTCTGTTACCTATTACTGATT
Found at i:6910346 original size:62 final size:62
Alignment explanation
Indices: 6910248--6910412 Score: 235
Period size: 62 Copynumber: 2.7 Consensus size: 62
6910238 TTGCATTCAC
* * *
6910248 ATTCTGGTTTTGATTCTGTTACCTGATACTGATTCTGATTCTGTTACCTATTTCTTATTCTG
1 ATTCTGATTTTGATTCTGTTACCTGATACTGATTCTGATTCTGTTACCTAATTCTGATTCTG
* *
6910310 GTTCTGATTCTGATTCTGTTACCTGATACTGATTCTGATTCTGTTACCTAATTCTGATTCTG
1 ATTCTGATTTTGATTCTGTTACCTGATACTGATTCTGATTCTGTTACCTAATTCTGATTCTG
* * *
6910372 ATTTTGATTTTGATTCTGATT--TTGATTCTGATTCTGATTCT
1 ATTCTGATTTTGATTCTG-TTACCTGATACTGATTCTGATTCT
6910413 CATTTTGATT
Statistics
Matches: 92, Mismatches: 10, Indels: 3
0.88 0.10 0.03
Matches are distributed among these distances:
61 18 0.20
62 72 0.78
63 2 0.02
ACGTcount: A:0.17, C:0.16, G:0.15, T:0.52
Consensus pattern (62 bp):
ATTCTGATTTTGATTCTGTTACCTGATACTGATTCTGATTCTGTTACCTAATTCTGATTCTG
Found at i:6910363 original size:19 final size:19
Alignment explanation
Indices: 6910279--6910371 Score: 82
Period size: 19 Copynumber: 4.6 Consensus size: 19
6910269 CCTGATACTG
6910279 ATTCTGATTCTGTTACCTA
1 ATTCTGATTCTGTTACCTA
* * *
6910298 TTTCTTATTCTGGTT--CTG
1 ATTCTGATTCT-GTTACCTA
6910316 ATTCTGATTCTGTTACCTGATA
1 ATTCTGATTCTGTTACC---TA
6910338 CTGATTCTGATTCTGTTACCTA
1 ---ATTCTGATTCTGTTACCTA
6910360 ATTCTGATTCTG
1 ATTCTGATTCTG
6910372 ATTTTGATTT
Statistics
Matches: 59, Mismatches: 6, Indels: 18
0.71 0.07 0.22
Matches are distributed among these distances:
17 3 0.05
18 11 0.19
19 22 0.37
20 3 0.05
22 3 0.05
25 17 0.29
ACGTcount: A:0.17, C:0.19, G:0.14, T:0.49
Consensus pattern (19 bp):
ATTCTGATTCTGTTACCTA
Found at i:6912383 original size:27 final size:27
Alignment explanation
Indices: 6912361--6912649 Score: 364
Period size: 27 Copynumber: 10.7 Consensus size: 27
6912351 TTAGTTTACC
* *
6912361 AAATTACCAAAATACCCCTAGTTTTTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* **
6912388 AAATTACCAAAATACCCTTGGTTTACA
1 AAATTACCAAAATACCCCTGGTTTGTA
* *
6912415 AAATTACCAAAGTACCCCTAGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
6912442 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
6912469 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
6912496 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
6912523 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
** *
6912550 AAATTACCAAAATACCCCTGACTTGTG
1 AAATTACCAAAATACCCCTGGTTTGTA
** * ***
6912577 AAATTACTGAAATACCCTTGACCTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
*** **
6912604 AAATTATTGAAATA-CCCTCGACTTGTA
1 AAATTACCAAAATACCCCT-GGTTTGTA
*
6912631 AAATTACCAAAGTACCCCT
1 AAATTACCAAAATACCCCT
6912650 AATTTATAGA
Statistics
Matches: 234, Mismatches: 26, Indels: 3
0.89 0.10 0.01
Matches are distributed among these distances:
26 3 0.01
27 227 0.97
28 4 0.02
ACGTcount: A:0.38, C:0.23, G:0.10, T:0.29
Consensus pattern (27 bp):
AAATTACCAAAATACCCCTGGTTTGTA
Found at i:6912722 original size:27 final size:27
Alignment explanation
Indices: 6912692--6912917 Score: 254
Period size: 27 Copynumber: 8.4 Consensus size: 27
6912682 ACAAAATTAT
* *
6912692 CGAAATACCCTTGTAAGGTAGAAATAC
1 CGAAATACCCCTGTAGGGTAGAAATAC
* * *
6912719 CGAAATACCCTTGTAGGTTAGAAACAC
1 CGAAATACCCCTGTAGGGTAGAAATAC
6912746 CGAAATACCCCTGTAGGGTAGAAATAC
1 CGAAATACCCCTGTAGGGTAGAAATAC
*
6912773 CGAAATACCCCTGTAGGGTAGAATTAC
1 CGAAATACCCCTGTAGGGTAGAAATAC
** * *
6912800 TAAAATACCCCTATAGGGTAGAATTAC
1 CGAAATACCCCTGTAGGGTAGAAATAC
* *
6912827 CGAAATACTCTTGTAGGGTAGAAATAC
1 CGAAATACCCCTGTAGGGTAGAAATAC
** * * *
6912854 TAAAATAACCCTGTATGGTAGAATTAC
1 CGAAATACCCCTGTAGGGTAGAAATAC
** * *
6912881 TAAAATACCCCTGTAGGATAGAATTAC
1 CGAAATACCCCTGTAGGGTAGAAATAC
*
6912908 CGAGATACCC
1 CGAAATACCC
6912918 TTTTATGGTA
Statistics
Matches: 170, Mismatches: 29, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 170 1.00
ACGTcount: A:0.38, C:0.20, G:0.19, T:0.23
Consensus pattern (27 bp):
CGAAATACCCCTGTAGGGTAGAAATAC
Found at i:6912777 original size:81 final size:80
Alignment explanation
Indices: 6912692--6912917 Score: 281
Period size: 81 Copynumber: 2.8 Consensus size: 80
6912682 ACAAAATTAT
* ** * * **
6912692 CGAAATACCCTTGTAAGGTAGAAATACCGAAATACCCTTGTAGGTTAGAAACACCGAAATACCCC
1 CGAAATACCC-TGTAAGGTAGAATTACTAAAATACCCCTGTAGGATAGAATTACCGAAATACCCC
6912757 TGTAGGGTAGAAATAC
65 TGTAGGGTAGAAATAC
* * * * *
6912773 CGAAATACCCCTGTAGGGTAGAATTACTAAAATACCCCTATAGGGTAGAATTACCGAAATACTCT
1 CGAAATA-CCCTGTAAGGTAGAATTACTAAAATACCCCTGTAGGATAGAATTACCGAAATACCCC
6912838 TGTAGGGTAGAAATAC
65 TGTAGGGTAGAAATAC
** * *
6912854 TAAAATAACCCTGTATGGTAGAATTACTAAAATACCCCTGTAGGATAGAATTACCGAGATACCC
1 CGAAAT-ACCCTGTAAGGTAGAATTACTAAAATACCCCTGTAGGATAGAATTACCGAAATACCC
6912918 TTTTATGGTA
Statistics
Matches: 125, Mismatches: 18, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
81 121 0.97
82 4 0.03
ACGTcount: A:0.38, C:0.20, G:0.19, T:0.23
Consensus pattern (80 bp):
CGAAATACCCTGTAAGGTAGAATTACTAAAATACCCCTGTAGGATAGAATTACCGAAATACCCCT
GTAGGGTAGAAATAC
Found at i:6913483 original size:19 final size:19
Alignment explanation
Indices: 6913461--6913600 Score: 70
Period size: 19 Copynumber: 6.8 Consensus size: 19
6913451 CATTCACATT
6913461 CTGATTTTGATTCTGTTAC
1 CTGATTTTGATTCTGTTAC
6913480 CTGATACTAATTCTGATTCTGTTAC
1 CTG--A-T--TT-TGATTCTGTTAC
* *
6913505 CTAATTCTGATTCTGTTAC
1 CTGATTTTGATTCTGTTAC
*
6913524 CTGATACTGATTCTGATTATGTTAC
1 CTG--A-T--TT-TGATTCTGTTAC
*
6913549 CT-AGTTCTGATTCTGATT--
1 CTGA-TTTTGATTCTG-TTAC
* *
6913567 CTGATTTTGAGTCTGTCAC
1 CTGATTTTGATTCTGTTAC
*
6913586 CTGATTCTGATTCTG
1 CTGATTTTGATTCTG
6913601 ATTCTGATTC
Statistics
Matches: 92, Mismatches: 13, Indels: 32
0.67 0.09 0.23
Matches are distributed among these distances:
17 1 0.01
18 11 0.12
19 38 0.41
20 4 0.04
21 2 0.02
22 5 0.05
23 1 0.01
24 3 0.03
25 27 0.29
ACGTcount: A:0.19, C:0.19, G:0.16, T:0.46
Consensus pattern (19 bp):
CTGATTTTGATTCTGTTAC
Found at i:6913500 original size:6 final size:6
Alignment explanation
Indices: 6913458--6913637 Score: 97
Period size: 6 Copynumber: 29.3 Consensus size: 6
6913448 TTGCATTCAC
* * * *
6913458 ATTCTG ATTTTG ATTCTG -TTACCTG ATACTA ATTCTG ATTCTG -TTACCTA
1 ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATT--CTG
* *
6913508 ATTCTG ATTCTG -TTACCTG ATACTG ATTCTG ATTATG -TTACCT- AGTTCTG
1 ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATT--CTG A-TTCTG
* * *
6913558 ATTCTG ATTCTG ATTTTG AGTCTG -TCACCTG ATTCTG ATTCTG ATTCTG
1 ATTCTG ATTCTG ATTCTG ATTCTG AT--TCTG ATTCTG ATTCTG ATTCTG
* *
6913607 ATTCTG A-TCTT ATTTTG ATTCT- AGTTCTG AT
1 ATTCTG ATTCTG ATTCTG ATTCTG A-TTCTG AT
6913638 AATGTTTCTT
Statistics
Matches: 132, Mismatches: 22, Indels: 40
0.68 0.11 0.21
Matches are distributed among these distances:
5 13 0.10
6 98 0.74
7 14 0.11
8 7 0.05
ACGTcount: A:0.19, C:0.17, G:0.15, T:0.48
Consensus pattern (6 bp):
ATTCTG
Found at i:6913502 original size:25 final size:24
Alignment explanation
Indices: 6913468--6913569 Score: 106
Period size: 25 Copynumber: 4.3 Consensus size: 24
6913458 ATTCTGATTT
6913468 TGATTCTGTTACCTGATACTAATTC
1 TGATTCTGTTACCT-ATACTAATTC
6913493 TGATTCTGTTA-C----CTAATTC
1 TGATTCTGTTACCTATACTAATTC
*
6913512 TGATTCTGTTACCTGATACTGATTC
1 TGATTCTGTTACCT-ATACTAATTC
* * *
6913537 TGATTATGTTACCTAGTTCTGATTC
1 TGATTCTGTTACCTA-TACTAATTC
6913562 TGATTCTG
1 TGATTCTG
6913570 ATTTTGAGTC
Statistics
Matches: 66, Mismatches: 4, Indels: 14
0.79 0.05 0.17
Matches are distributed among these distances:
19 18 0.27
20 1 0.02
24 2 0.03
25 45 0.68
ACGTcount: A:0.21, C:0.19, G:0.15, T:0.46
Consensus pattern (24 bp):
TGATTCTGTTACCTATACTAATTC
Found at i:6913531 original size:44 final size:44
Alignment explanation
Indices: 6913468--6913563 Score: 165
Period size: 44 Copynumber: 2.2 Consensus size: 44
6913458 ATTCTGATTT
*
6913468 TGATTCTGTTACCTGATACTAATTCTGATTCTGTTACCTAATTC
1 TGATTCTGTTACCTGATACTAATTCTGATTATGTTACCTAATTC
* *
6913512 TGATTCTGTTACCTGATACTGATTCTGATTATGTTACCTAGTTC
1 TGATTCTGTTACCTGATACTAATTCTGATTATGTTACCTAATTC
6913556 TGATTCTG
1 TGATTCTG
6913564 ATTCTGATTT
Statistics
Matches: 49, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
44 49 1.00
ACGTcount: A:0.21, C:0.19, G:0.15, T:0.46
Consensus pattern (44 bp):
TGATTCTGTTACCTGATACTAATTCTGATTATGTTACCTAATTC
Found at i:6916184 original size:29 final size:28
Alignment explanation
Indices: 6916086--6916202 Score: 105
Period size: 28 Copynumber: 4.1 Consensus size: 28
6916076 ACATACATGC
* *
6916086 ATATGGCCCACTT-GGCCC-AATCTCATTT
1 ATATGGCCCA-TTAGGCCCAAATCAC-CTT
* * * **
6916114 ATATTGCCCATCAGGCCCAATTCATATT
1 ATATGGCCCATTAGGCCCAAATCACCTT
6916142 CAT-TGGCCCATTAGGCCCAAATCACCTTT
1 -ATATGGCCCATTAGGCCCAAATCACC-TT
*
6916171 ATATGGCCCGTTAGGCCCAAATCACCTT
1 ATATGGCCCATTAGGCCCAAATCACCTT
6916199 ATAT
1 ATAT
6916203 TCATGCTCAC
Statistics
Matches: 72, Mismatches: 12, Indels: 10
0.77 0.13 0.11
Matches are distributed among these distances:
27 1 0.01
28 42 0.58
29 29 0.40
ACGTcount: A:0.26, C:0.31, G:0.14, T:0.30
Consensus pattern (28 bp):
ATATGGCCCATTAGGCCCAAATCACCTT
Found at i:6923258 original size:29 final size:29
Alignment explanation
Indices: 6923185--6923262 Score: 83
Period size: 28 Copynumber: 2.7 Consensus size: 29
6923175 TACATACATG
6923185 CATATGGCCCACTT-GGCCCAATGTCATTT
1 CATATGGCCCA-TTAGGCCCAATGTCATTT
* *
6923214 -ATCTGG-CCTTTCAGGCCCAAT-TCATATT
1 CATATGGCCCATT-AGGCCCAATGTCAT-TT
6923242 CATATGGCCCATTAGGCCCAA
1 CATATGGCCCATTAGGCCCAA
6923263 ATCACCTTTA
Statistics
Matches: 40, Mismatches: 4, Indels: 10
0.74 0.07 0.19
Matches are distributed among these distances:
26 2 0.05
27 6 0.15
28 15 0.38
29 13 0.32
30 4 0.10
ACGTcount: A:0.23, C:0.31, G:0.17, T:0.29
Consensus pattern (29 bp):
CATATGGCCCATTAGGCCCAATGTCATTT
Found at i:6923531 original size:8 final size:8
Alignment explanation
Indices: 6923515--6923557 Score: 50
Period size: 8 Copynumber: 5.4 Consensus size: 8
6923505 ACAGCTAAAC
*
6923515 TTTCAGCT
1 TTTCGGCT
6923523 TTTCGGCT
1 TTTCGGCT
*
6923531 TTTTGGCT
1 TTTCGGCT
*
6923539 TTTCGGCA
1 TTTCGGCT
*
6923547 TTTCAGCT
1 TTTCGGCT
6923555 TTT
1 TTT
6923558 ACCGATCTAC
Statistics
Matches: 29, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
8 29 1.00
ACGTcount: A:0.07, C:0.21, G:0.19, T:0.53
Consensus pattern (8 bp):
TTTCGGCT
Found at i:6923555 original size:16 final size:16
Alignment explanation
Indices: 6923515--6923557 Score: 59
Period size: 16 Copynumber: 2.7 Consensus size: 16
6923505 ACAGCTAAAC
*
6923515 TTTCAGCTTTTCGGCT
1 TTTCAGCTTTTCGGCA
**
6923531 TTTTGGCTTTTCGGCA
1 TTTCAGCTTTTCGGCA
6923547 TTTCAGCTTTT
1 TTTCAGCTTTT
6923558 ACCGATCTAC
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
16 22 1.00
ACGTcount: A:0.07, C:0.21, G:0.19, T:0.53
Consensus pattern (16 bp):
TTTCAGCTTTTCGGCA
Found at i:6925860 original size:69 final size:69
Alignment explanation
Indices: 6925779--6925918 Score: 244
Period size: 69 Copynumber: 2.0 Consensus size: 69
6925769 TGTCATGACA
* *
6925779 TAGGATTTTCGATATGTGTTCTCGAGTAAAACCACGTCTGGGACATTGGCATCGATATGTGATTA
1 TAGGATTTTCGATATGTGTTCTCAAGTAAAACCACGTCTGGGACATTAGCATCGATATGTGATTA
6925844 CGTG
66 CGTG
* *
6925848 TAGGATTTTCGATATGTGTTCTCAAGTAAGACCACGTCTGGGACATTAGCATTGATATGTGATTA
1 TAGGATTTTCGATATGTGTTCTCAAGTAAAACCACGTCTGGGACATTAGCATCGATATGTGATTA
6925913 CGTG
66 CGTG
6925917 TA
1 TA
6925919 AGACCATGTC
Statistics
Matches: 67, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
69 67 1.00
ACGTcount: A:0.26, C:0.15, G:0.25, T:0.34
Consensus pattern (69 bp):
TAGGATTTTCGATATGTGTTCTCAAGTAAAACCACGTCTGGGACATTAGCATCGATATGTGATTA
CGTG
Found at i:6925954 original size:26 final size:26
Alignment explanation
Indices: 6925917--6925968 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
6925907 TGATTACGTG
*
6925917 TAAGACCATGTCTGGGACATTGGCAT
1 TAAGACCATGTCTGGGACAGTGGCAT
*
6925943 TAAGACCCTGTCTGGGACAGTGGCAT
1 TAAGACCATGTCTGGGACAGTGGCAT
6925969 CGATATGTGA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.21, G:0.29, T:0.25
Consensus pattern (26 bp):
TAAGACCATGTCTGGGACAGTGGCAT
Found at i:6926002 original size:69 final size:69
Alignment explanation
Indices: 6925874--6926012 Score: 154
Period size: 69 Copynumber: 2.0 Consensus size: 69
6925864 TGTTCTCAAG
* * * ** **
6925874 TAAGACCACGTCTGGGACATTAGCATTGATATGTGATTACGTGTAAGACCATGTCTGGGACATTG
1 TAAGACCACGTCTGGGACAGTAGCATCGATATGTGACTACACGTAAGACCACATCTGGGACATTG
*
6925939 GCAT
66 ACAT
* * * *
6925943 TAAGACC-CTGTCTGGGACAGTGGCATCGATATGTGACTGCACGTAAGACCACATTTGGGAGATT
1 TAAGACCAC-GTCTGGGACAGTAGCATCGATATGTGACTACACGTAAGACCACATCTGGGACATT
6926007 GACAT
65 GACAT
6926012 T
1 T
6926013 GTACGATATA
Statistics
Matches: 57, Mismatches: 12, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
68 1 0.02
69 56 0.98
ACGTcount: A:0.27, C:0.19, G:0.27, T:0.27
Consensus pattern (69 bp):
TAAGACCACGTCTGGGACAGTAGCATCGATATGTGACTACACGTAAGACCACATCTGGGACATTG
ACAT
Found at i:6926418 original size:18 final size:17
Alignment explanation
Indices: 6926391--6926425 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
6926381 ATATTATGGC
6926391 TTTGAGATTGGATGATAT
1 TTTGAGATTGGAT-ATAT
*
6926409 TTTGATATTGGATATAT
1 TTTGAGATTGGATATAT
6926426 GTATATTCGG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 4 0.25
18 12 0.75
ACGTcount: A:0.29, C:0.00, G:0.23, T:0.49
Consensus pattern (17 bp):
TTTGAGATTGGATATAT
Found at i:6928007 original size:16 final size:16
Alignment explanation
Indices: 6927983--6928015 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
6927973 GTGTGATGAC
6927983 TTCTAACATTTGAAAA
1 TTCTAACATTTGAAAA
*
6927999 TTCTGACATTTGAAAA
1 TTCTAACATTTGAAAA
6928015 T
1 T
6928016 GTATTTTCGT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.39, C:0.12, G:0.09, T:0.39
Consensus pattern (16 bp):
TTCTAACATTTGAAAA
Found at i:6941468 original size:30 final size:30
Alignment explanation
Indices: 6941422--6941490 Score: 79
Period size: 30 Copynumber: 2.3 Consensus size: 30
6941412 ATTTCGAGCA
*
6941422 TTGGGG-AAAAAGTGTAAATATGTAAAAGT
1 TTGGGGCAAAAAGTGTAAATATGCAAAAGT
* *
6941451 TTAGGGGCAAAAA-TGTAATTTTGCAAAAGT
1 TT-GGGGCAAAAAGTGTAAATATGCAAAAGT
*
6941481 TTGGGTCAAA
1 TTGGGGCAAA
6941491 GACTGTTTTA
Statistics
Matches: 34, Mismatches: 4, Indels: 4
0.81 0.10 0.10
Matches are distributed among these distances:
29 9 0.26
30 20 0.59
31 5 0.15
ACGTcount: A:0.41, C:0.04, G:0.26, T:0.29
Consensus pattern (30 bp):
TTGGGGCAAAAAGTGTAAATATGCAAAAGT
Found at i:6941976 original size:55 final size:53
Alignment explanation
Indices: 6941900--6942041 Score: 169
Period size: 53 Copynumber: 2.6 Consensus size: 53
6941890 AAGGAAATCA
* *
6941900 GTAAGACCATGTCAAGACATGGCATTGATAAGTTACTATAAGGCAAAGG-TCCCAT
1 GTAAGACCATGTCAAGACATGGCATTGGTAAGTT-C-ATAAGGC-AAGGCTACCAT
* * * * *
6941955 GTAAGACCATGCCAAGGCATGGCATTGGTGACTTCATAAGGCAAGGCTACGAT
1 GTAAGACCATGTCAAGACATGGCATTGGTAAGTTCATAAGGCAAGGCTACCAT
* *
6942008 GTAAGACAATGTCAAGACATGGCAATGGTAAGTT
1 GTAAGACCATGTCAAGACATGGCATTGGTAAGTT
6942042 TCAAAAGGAT
Statistics
Matches: 73, Mismatches: 13, Indels: 4
0.81 0.14 0.04
Matches are distributed among these distances:
52 4 0.05
53 39 0.53
54 1 0.01
55 29 0.40
ACGTcount: A:0.35, C:0.18, G:0.25, T:0.23
Consensus pattern (53 bp):
GTAAGACCATGTCAAGACATGGCATTGGTAAGTTCATAAGGCAAGGCTACCAT
Found at i:6948140 original size:23 final size:23
Alignment explanation
Indices: 6948113--6948158 Score: 83
Period size: 23 Copynumber: 2.0 Consensus size: 23
6948103 GAAAAATACC
6948113 CATAGGTAAAATTTGTGTATTTT
1 CATAGGTAAAATTTGTGTATTTT
*
6948136 CATAGGTGAAATTTGTGTATTTT
1 CATAGGTAAAATTTGTGTATTTT
6948159 GGTGTTTTAT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.28, C:0.04, G:0.20, T:0.48
Consensus pattern (23 bp):
CATAGGTAAAATTTGTGTATTTT
Found at i:6948403 original size:29 final size:28
Alignment explanation
Indices: 6948370--6948427 Score: 71
Period size: 28 Copynumber: 2.0 Consensus size: 28
6948360 ATCACGAGCC
6948370 TAGGGGAAAAATGTAAATATGCAAAAGTT
1 TAGGGGAAAAAT-TAAATATGCAAAAGTT
* * * *
6948399 TAGGGGTAAAATTAATTTTGCCAAAGTT
1 TAGGGGAAAAATTAAATATGCAAAAGTT
6948427 T
1 T
6948428 GGGTCAAGGA
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
28 14 0.56
29 11 0.44
ACGTcount: A:0.41, C:0.05, G:0.22, T:0.31
Consensus pattern (28 bp):
TAGGGGAAAAATTAAATATGCAAAAGTT
Found at i:6948850 original size:55 final size:55
Alignment explanation
Indices: 6948762--6949019 Score: 218
Period size: 55 Copynumber: 4.9 Consensus size: 55
6948752 ACTTAGGGTT
6948762 CAAGGATACCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGG
1 CAAGGATACCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGG
* * * * * *
6948817 CAAGGAAATCATGTAAGACCATGTCAAGACATGGC-ATTGATAA-GTTACTATAAGG
1 CAAGGATACCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTT--TCTAAGG
* * **
6948872 CAAAGG-TCCCACGTAAGACCATGCCAAGGCATGGC-ATTGGT--GACTTCATAAGG
1 C-AAGGATACCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTC-TAAGG
* * * * *
6948925 CAAGGCTACGATGTAAGACAATGTCAAGGCATGGCAA-TGGCAA-GTTTC-AA--
1 CAAGGATACCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGG
* * * *
6948975 -AAGGATACCACGTAAGACCATGACAAGTCATGGTAA-TGGTAAGGT
1 CAAGGATACCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGT
6949020 ACTCACGTAT
Statistics
Matches: 161, Mismatches: 32, Indels: 25
0.74 0.15 0.11
Matches are distributed among these distances:
49 34 0.21
50 2 0.01
52 7 0.04
53 36 0.22
54 12 0.07
55 66 0.41
56 4 0.02
ACGTcount: A:0.35, C:0.18, G:0.26, T:0.21
Consensus pattern (55 bp):
CAAGGATACCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGG
Found at i:6948970 original size:108 final size:109
Alignment explanation
Indices: 6948774--6948970 Score: 265
Period size: 108 Copynumber: 1.8 Consensus size: 109
6948764 AGGATACCAT
** *
6948774 GTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGCAAGGAAATCATGTAAGACCAT
1 GTAAGACCATGCCAAGGCATGGCAATTGGT-AGACTTCTAAGGCAAGGAAATCATGTAAGACAAT
* *
6948839 GTCAAGACATGGCATTGATAAGTTACTATAAGGCAAAGGTCCCAC
65 GTCAAGACATGGCAATGACAAGTTACTATAAGGCAAAGGTCCCAC
**
6948884 GTAAGACCATGCCAAGGCATGGC-ATTGGT-GACTTCATAAGGCAAGGCTA-CGATGTAAGACAA
1 GTAAGACCATGCCAAGGCATGGCAATTGGTAGACTTC-TAAGGCAAGGAAATC-ATGTAAGACAA
* *
6948946 TGTCAAGGCATGGCAATGGCAAGTT
64 TGTCAAGACATGGCAATGACAAGTT
6948971 TCAAAAGGAT
Statistics
Matches: 76, Mismatches: 9, Indels: 6
0.84 0.10 0.07
Matches are distributed among these distances:
107 5 0.07
108 42 0.55
109 6 0.08
110 23 0.30
ACGTcount: A:0.34, C:0.18, G:0.26, T:0.21
Consensus pattern (109 bp):
GTAAGACCATGCCAAGGCATGGCAATTGGTAGACTTCTAAGGCAAGGAAATCATGTAAGACAATG
TCAAGACATGGCAATGACAAGTTACTATAAGGCAAAGGTCCCAC
Found at i:6952634 original size:27 final size:26
Alignment explanation
Indices: 6952601--6952811 Score: 192
Period size: 27 Copynumber: 7.8 Consensus size: 26
6952591 ATACCCCCAG
* *
6952601 TTGTAAAATTACCAAAGTACCCCCGGT
1 TTGTAAAATTACCAAA-TACCCTCGAT
* * *
6952628 TTATAAAATTACCGAAATACCGTTGA-
1 TTGTAAAATTACC-AAATACCCTCGAT
**
6952654 TTGTAAAATTATTGAAATACCCTCGAT
1 TTGTAAAATTA-CCAAATACCCTCGAT
* * *
6952681 TTGTAAAATTACTGAAATACACTCGAC
1 TTGTAAAATTAC-CAAATACCCTCGAT
*
6952708 TTGTAAAATTACCAAAGTACCCCCGAT
1 TTGTAAAATTACCAAA-TACCCTCGAT
*
6952735 TTATAAAATTACCGAAATACCCTCGAT
1 TTGTAAAATTACC-AAATACCCTCGAT
*
6952762 TTGTAAAATTACCAAAATACTCTC-AGT
1 TTGTAAAATTACC-AAATACCCTCGA-T
* *
6952789 TTGCAAAATTACTGAAATACCCT
1 TTGTAAAATTAC-CAAATACCCT
6952812 TGTAGGGTAG
Statistics
Matches: 151, Mismatches: 25, Indels: 16
0.79 0.13 0.08
Matches are distributed among these distances:
26 24 0.16
27 121 0.80
28 6 0.04
ACGTcount: A:0.39, C:0.20, G:0.10, T:0.30
Consensus pattern (26 bp):
TTGTAAAATTACCAAATACCCTCGAT
Found at i:6952806 original size:54 final size:53
Alignment explanation
Indices: 6952573--6952811 Score: 239
Period size: 54 Copynumber: 4.5 Consensus size: 53
6952563 AACACTTTAG
* * * * *
6952573 TTTACTAAAATTATTTAAATACCC-CCAGTTGTAAAATTACCAAAGTACCCCCGG
1 TTTA-TAAAATTACTGAAATACCCTCGA-TTGTAAAATTACCAAAATACCCCCGA
* * * *** *
6952627 TTTATAAAATTACCGAAATACCGTTGATTGTAAAATTATTGAAATACCCTCGA
1 TTTATAAAATTACTGAAATACCCTCGATTGTAAAATTACCAAAATACCCCCGA
* * *
6952680 TTTGTAAAATTACTGAAATACACTCGACTTGTAAAATTACCAAAGTACCCCCGA
1 TTTATAAAATTACTGAAATACCCTCGA-TTGTAAAATTACCAAAATACCCCCGA
* * *
6952734 TTTATAAAATTACCGAAATACCCTCGATTTGTAAAATTACCAAAATACTCTC-A
1 TTTATAAAATTACTGAAATACCCTCGA-TTGTAAAATTACCAAAATACCCCCGA
**
6952787 GTTTGCAAAATTACTGAAATACCCT
1 -TTTATAAAATTACTGAAATACCCT
6952812 TGTAGGGTAG
Statistics
Matches: 150, Mismatches: 32, Indels: 6
0.80 0.17 0.03
Matches are distributed among these distances:
53 58 0.39
54 92 0.61
ACGTcount: A:0.39, C:0.21, G:0.10, T:0.31
Consensus pattern (53 bp):
TTTATAAAATTACTGAAATACCCTCGATTGTAAAATTACCAAAATACCCCCGA
Found at i:6952825 original size:27 final size:27
Alignment explanation
Indices: 6952795--6953370 Score: 296
Period size: 27 Copynumber: 21.2 Consensus size: 27
6952785 CAGTTTGCAA
6952795 AATTACTGAAATACCCTTGTAGGGTAG
1 AATTACTGAAATACCCTTGTAGGGTAG
* *
6952822 AATTACTAAAATACCAC-TATAGGGTAG
1 AATTACTGAAATACC-CTTGTAGGGTAG
6952849 AATTACTGAAATACCCTTGTAGGGTAG
1 AATTACTGAAATACCCTTGTAGGGTAG
* *
6952876 AATTACTAAAATACCAC-TATAGGGTAG
1 AATTACTGAAATACC-CTTGTAGGGTAG
6952903 AATTACTGAAATACCCTTGTAGGGTAG
1 AATTACTGAAATACCCTTGTAGGGTAG
* *
6952930 AATCA-TCGAAATACCCTTATAGGGTAG
1 AATTACT-GAAATACCCTTGTAGGGTAG
* * * *
6952957 AAATACCGAAATACCCCTATAGGGTAG
1 AATTACTGAAATACCCTTGTAGGGTAG
* * ** *
6952984 AATTA--GTAAGA--CTATGTCAAGACATGG
1 AATTACTGAAATACCCT-TGT--AG-GGTAG
* * * * *
6953011 CATTGA-T-AAGTTA--C-TATAAGGCA-
1 AATT-ACTGAA-ATACCCTTGTAGGGTAG
* * * * * * *
6953034 AAGGTCCCAC-GTAAGA-CCATGCCAAGGCATGG
1 AA--T--TACTGAAATACCCTTG--TAGG-GTAG
*
6953066 CATTGGTGA-TGAAATAACCC-TGTAGGGTAG
1 -AAT--T-ACTGAAAT-ACCCTTGTAGGGTAG
*
6953096 AATTACTGAAATA-CCTCTGTAAGGTAG
1 AATTACTGAAATACCCT-TGTAGGGTAG
* * *
6953123 AATTACCGAAATACCCCTGTAGTGTAG
1 AATTACTGAAATACCCTTGTAGGGTAG
* * *
6953150 AATTACTAAAATACCCCTATAGGGTAG
1 AATTACTGAAATACCCTTGTAGGGTAG
* * * *
6953177 AATTA-TCGAGATACACTTGTGGGGTAA
1 AATTACT-GAAATACCCTTGTAGGGTAG
* ** *
6953204 AATTAC-CATTTTACCCCTGTAGGGTAG
1 AATTACTGA-AATACCCTTGTAGGGTAG
6953231 AATTACTGAAATACCCTT-T-GCGGTAG
1 AATTACTGAAATACCCTTGTAG-GGTAG
* * *
6953257 AATTACTAAAATACCCCTGTAAGGTAG
1 AATTACTGAAATACCCTTGTAGGGTAG
* *
6953284 AATTACTGAAATACCCCTGTAAGGTAG
1 AATTACTGAAATACCCTTGTAGGGTAG
* *
6953311 AATTATTGAAATACCCCTGTAGGGTAG
1 AATTACTGAAATACCCTTGTAGGGTAG
* * *
6953338 AATTACCGAGATACCCTTGTAGGGTAA
1 AATTACTGAAATACCCTTGTAGGGTAG
6953365 AATTAC
1 AATTAC
6953371 CATTTTACCC
Statistics
Matches: 417, Mismatches: 91, Indels: 82
0.71 0.15 0.14
Matches are distributed among these distances:
23 2 0.00
24 2 0.00
25 9 0.02
26 33 0.08
27 341 0.82
28 8 0.02
29 4 0.01
30 4 0.01
31 4 0.01
32 4 0.01
33 4 0.01
34 2 0.00
ACGTcount: A:0.36, C:0.17, G:0.20, T:0.27
Consensus pattern (27 bp):
AATTACTGAAATACCCTTGTAGGGTAG
Found at i:6952826 original size:54 final size:54
Alignment explanation
Indices: 6952795--6953370 Score: 347
Period size: 54 Copynumber: 10.6 Consensus size: 54
6952785 CAGTTTGCAA
6952795 AATTACTGAAATACCCTTGTAGGGTAGAATTACTAAAATACCACTATAGGGTAG
1 AATTACTGAAATACCCTTGTAGGGTAGAATTACTAAAATACCACTATAGGGTAG
6952849 AATTACTGAAATACCCTTGTAGGGTAGAATTACTAAAATACCACTATAGGGTAG
1 AATTACTGAAATACCCTTGTAGGGTAGAATTACTAAAATACCACTATAGGGTAG
* *
6952903 AATTACTGAAATACCCTTGTAGGGTAGAATCA-TCGAAATACC-CTTATAGGGTAG
1 AATTACTGAAATACCCTTGTAGGGTAGAATTACT-AAAATACCAC-TATAGGGTAG
* * * * * * *** ** *
6952957 AAATACCGAAATACCCCTATAGGGTAGAATTAGTAAGACTATGTC-A-AGACATGG
1 AATTACTGAAATACCCTTGTAGGGTAGAATTACTAA-AATACCACTATAG-GGTAG
* * * * * * * * * * * * *
6953011 CATTGA-T-AAGTTA--C-TATAAGGCA-AAGGTCCCACGTAAGACCATGCCA-AGGCATGG
1 AATT-ACTGAA-ATACCCTTGTAGGGTAGAA-TTACTA--AAATACCA--CTATAGG-GTAG
* * * * *
6953066 CATTGGTGA-TGAAATAACCC-TGTAGGGTAGAATTACTGAAATACCTCTGTAAGGTAG
1 -AAT--T-ACTGAAAT-ACCCTTGTAGGGTAGAATTACTAAAATACCACTATAGGGTAG
* * * *
6953123 AATTACCGAAATACCCCTGTAGTGTAGAATTACTAAAATACCCCTATAGGGTAG
1 AATTACTGAAATACCCTTGTAGGGTAGAATTACTAAAATACCACTATAGGGTAG
* * * * * *** * *
6953177 AATTA-TCGAGATACACTTGTGGGGTAAAATTACCATTTTACCCCTGTAGGGTAG
1 AATTACT-GAAATACCCTTGTAGGGTAGAATTACTAAAATACCACTATAGGGTAG
* * *
6953231 AATTACTGAAATACCCTT-T-GCGGTAGAATTACTAAAATACCCCTGTAAGGTAG
1 AATTACTGAAATACCCTTGTAG-GGTAGAATTACTAAAATACCACTATAGGGTAG
* * * * * *
6953284 AATTACTGAAATACCCCTGTAAGGTAGAATTATTGAAATACCCCTGTAGGGTAG
1 AATTACTGAAATACCCTTGTAGGGTAGAATTACTAAAATACCACTATAGGGTAG
* * *
6953338 AATTACCGAGATACCCTTGTAGGGTAAAATTAC
1 AATTACTGAAATACCCTTGTAGGGTAGAATTAC
6953371 CATTTTACCC
Statistics
Matches: 404, Mismatches: 87, Indels: 62
0.73 0.16 0.11
Matches are distributed among these distances:
50 2 0.00
51 9 0.02
52 4 0.01
53 55 0.14
54 288 0.71
55 13 0.03
56 4 0.01
57 3 0.01
58 7 0.02
59 8 0.02
61 9 0.02
62 2 0.00
ACGTcount: A:0.36, C:0.17, G:0.20, T:0.27
Consensus pattern (54 bp):
AATTACTGAAATACCCTTGTAGGGTAGAATTACTAAAATACCACTATAGGGTAG
Found at i:6952826 original size:81 final size:78
Alignment explanation
Indices: 6952578--6952836 Score: 223
Period size: 81 Copynumber: 3.2 Consensus size: 78
6952568 TTTAGTTTAC
* * * * * * * *
6952578 TAAAATTATTTAAATACCC-CCAGTTGTAAAATTACCAAAGTACCCCCGGTTTATAAAATTACCG
1 TAAAATTACTGAAATACCCTCGATTTGTAAAATTACCAAAATACACTC-GTTTGTAAAATTA-CG
*
6952642 AAATACCGTTGATTG
64 AAATACCCTTGATTG
* ** * *
6952657 TAAAATTATTGAAATACCCTCGATTTGTAAAATTACTGAAATACACTCGACTTGTAAAATTACCA
1 TAAAATTACTGAAATACCCTCGATTTGTAAAATTACCAAAATACACTCG-TTTGTAAAATTACGA
** *
6952722 AAGTACCCCCGATTTA
65 AA-TACCCTTGA-TTG
* * *
6952738 TAAAATTACCGAAATACCCTCGATTTGTAAAATTACCAAAATACTCTCAGTTTGCAAAATTACTG
1 TAAAATTACTGAAATACCCTCGATTTGTAAAATTACCAAAATACACTC-GTTTGTAAAATTAC-G
**
6952803 AAATACCCTTGTAGGG
64 AAATACCCTTG-ATTG
* *
6952819 TAGAATTACTAAAATACC
1 TAAAATTACTGAAATACC
6952837 ACTATAGGGT
Statistics
Matches: 142, Mismatches: 31, Indels: 12
0.77 0.17 0.06
Matches are distributed among these distances:
79 23 0.16
80 37 0.26
81 77 0.54
82 5 0.04
ACGTcount: A:0.39, C:0.20, G:0.11, T:0.30
Consensus pattern (78 bp):
TAAAATTACTGAAATACCCTCGATTTGTAAAATTACCAAAATACACTCGTTTGTAAAATTACGAA
ATACCCTTGATTG
Found at i:6952853 original size:81 final size:81
Alignment explanation
Indices: 6952768--6952988 Score: 191
Period size: 81 Copynumber: 2.7 Consensus size: 81
6952758 CGATTTGTAA
* ** * *
6952768 AATTACCAAAATACTCTCAGT-TTGCAAAATTACTGAAATACC-CTTGTAGGGTAGAATTACTAA
1 AATTACCAAAATACCCT-AGTAGGGCAAAATTACTAAAATACCAC-TATAGGGTAGAATTACTAA
6952831 AATACCAC-TATAGGGTAG
64 AATACC-CTTATAGGGTAG
** * * * *
6952849 AATTACTGAAATACCCTTGTAGGGTAGAATTACTAAAATACCACTATAGGGTAGAATTACTGAAA
1 AATTACCAAAATACCCTAGTAGGGCAAAATTACTAAAATACCACTATAGGGTAGAATTACTAAAA
*
6952914 TACCCTTGTAGGGTAG
66 TACCCTTATAGGGTAG
* * * * ** *
6952930 AATCATCGAAATACCCTTA-TAGGGTAGAAA-TACCGAAATACCCCTATAGGGTAGAATTA
1 AATTACCAAAATACCC-TAGTAGGGCA-AAATTACTAAAATACCACTATAGGGTAGAATTA
6952989 GTAAGACTAT
Statistics
Matches: 115, Mismatches: 20, Indels: 10
0.79 0.14 0.07
Matches are distributed among these distances:
80 3 0.03
81 108 0.94
82 4 0.03
ACGTcount: A:0.39, C:0.17, G:0.17, T:0.27
Consensus pattern (81 bp):
AATTACCAAAATACCCTAGTAGGGCAAAATTACTAAAATACCACTATAGGGTAGAATTACTAAAA
TACCCTTATAGGGTAG
Found at i:6953284 original size:161 final size:161
Alignment explanation
Indices: 6953091--6953382 Score: 487
Period size: 161 Copynumber: 1.8 Consensus size: 161
6953081 AACCCTGTAG
* *
6953091 GGTAGAATTACTGAAATACCTCTGTAAGGTAGAATTACCGAAATACCCCTGT-AGTGTAGAATTA
1 GGTAGAATTACTAAAATACCCCTGTAAGGTAGAATTACCGAAATACCCCTGTAAG-GTAGAATTA
* *
6953155 CTAAAATACCCCTATAGGGTAGAATTATCGAGATACACTTGTGGGGTAAAATTACCATTTTACCC
65 CTAAAATACCCCTATAGGGTAGAATTACCGAGATACACTTGTAGGGTAAAATTACCATTTTACCC
6953220 CTGTAGGGTAGAATTACTGAAATACCCTTTGC
130 CTGTAGGGTAGAATTACTGAAATACCCTTTGC
* *
6953252 GGTAGAATTACTAAAATACCCCTGTAAGGTAGAATTACTGAAATACCCCTGTAAGGTAGAATTAT
1 GGTAGAATTACTAAAATACCCCTGTAAGGTAGAATTACCGAAATACCCCTGTAAGGTAGAATTAC
* * *
6953317 TGAAATACCCCTGTAGGGTAGAATTACCGAGATACCCTTGTAGGGTAAAATTACCATTTTACCCC
66 TAAAATACCCCTATAGGGTAGAATTACCGAGATACACTTGTAGGGTAAAATTACCATTTTACCCC
6953382 T
131 T
6953383 AGGGTGTTAA
Statistics
Matches: 121, Mismatches: 9, Indels: 2
0.92 0.07 0.02
Matches are distributed among these distances:
161 119 0.98
162 2 0.02
ACGTcount: A:0.34, C:0.18, G:0.19, T:0.29
Consensus pattern (161 bp):
GGTAGAATTACTAAAATACCCCTGTAAGGTAGAATTACCGAAATACCCCTGTAAGGTAGAATTAC
TAAAATACCCCTATAGGGTAGAATTACCGAGATACACTTGTAGGGTAAAATTACCATTTTACCCC
TGTAGGGTAGAATTACTGAAATACCCTTTGC
Found at i:6953371 original size:27 final size:27
Alignment explanation
Indices: 6953075--6953370 Score: 321
Period size: 27 Copynumber: 11.0 Consensus size: 27
6953065 GCATTGGTGA
*
6953075 TGAAATAACCCTGTAGGGTAGAATTAC
1 TGAAATACCCCTGTAGGGTAGAATTAC
* *
6953102 TGAAATACCTCTGTAAGGTAGAATTAC
1 TGAAATACCCCTGTAGGGTAGAATTAC
* *
6953129 CGAAATACCCCTGTAGTGTAGAATTAC
1 TGAAATACCCCTGTAGGGTAGAATTAC
* *
6953156 TAAAATACCCCTATAGGGTAGAATTA-
1 TGAAATACCCCTGTAGGGTAGAATTAC
* * * * *
6953182 TCGAGATACACTTGTGGGGTAAAATTAC
1 T-GAAATACCCCTGTAGGGTAGAATTAC
* **
6953210 -CATTTTACCCCTGTAGGGTAGAATTAC
1 TGA-AATACCCCTGTAGGGTAGAATTAC
*
6953237 TGAAATA-CCCT-TTGCGGTAGAATTAC
1 TGAAATACCCCTGTAG-GGTAGAATTAC
* *
6953263 TAAAATACCCCTGTAAGGTAGAATTAC
1 TGAAATACCCCTGTAGGGTAGAATTAC
* *
6953290 TGAAATACCCCTGTAAGGTAGAATTAT
1 TGAAATACCCCTGTAGGGTAGAATTAC
6953317 TGAAATACCCCTGTAGGGTAGAATTAC
1 TGAAATACCCCTGTAGGGTAGAATTAC
* * * *
6953344 CGAGATACCCTTGTAGGGTAAAATTAC
1 TGAAATACCCCTGTAGGGTAGAATTAC
6953371 CATTTTACCC
Statistics
Matches: 222, Mismatches: 40, Indels: 14
0.80 0.14 0.05
Matches are distributed among these distances:
25 2 0.01
26 23 0.10
27 195 0.88
28 2 0.01
ACGTcount: A:0.35, C:0.18, G:0.20, T:0.28
Consensus pattern (27 bp):
TGAAATACCCCTGTAGGGTAGAATTAC
Found at i:6953380 original size:134 final size:134
Alignment explanation
Indices: 6953083--6953370 Score: 346
Period size: 134 Copynumber: 2.1 Consensus size: 134
6953073 GATGAAATAA
* * * ** *
6953083 CCCTGTAGGGTAGAATTACTGAAATACCTCTGTAAGGTAGAATTACCGAAATACCCCTGTAGTGT
1 CCCTGTAGGGTAAAATTACTCAAATACC-CTTTGCGGTAGAATTACCAAAATACCCCTGTAGTGT
* * * *
6953148 AGAATTACTAAAATACCCCTATAGGGTAGAATTATCGAGATACACTTGTGGGGTAAAATTACCAT
65 AGAATTACTAAAATACCCCTATAAGGTAGAATTATCGAAATACACCTGTAGGGTAAAATTACCAT
**
6953213 TTTAC
130 GATAC
* * *
6953218 CCCTGTAGGGTAGAATTACTGAAATACCCTTTGCGGTAGAATTACTAAAATACCCCTGTAAG-GT
1 CCCTGTAGGGTAAAATTACTCAAATACCCTTTGCGGTAGAATTACCAAAATACCCCTGT-AGTGT
* * * * *
6953282 AGAATTACTGAAATACCCCTGTAAGGTAGAATTATTGAAATACCCCTGTAGGGTAGAATTACCGA
65 AGAATTACTAAAATACCCCTATAAGGTAGAATTATCGAAATACACCTGTAGGGTAAAATTACC-A
6953347 -GATAC
129 TGATAC
*
6953352 CCTTGTAGGGTAAAATTAC
1 CCCTGTAGGGTAAAATTAC
6953371 CATTTTACCC
Statistics
Matches: 133, Mismatches: 18, Indels: 5
0.85 0.12 0.03
Matches are distributed among these distances:
134 102 0.77
135 31 0.23
ACGTcount: A:0.34, C:0.18, G:0.20, T:0.28
Consensus pattern (134 bp):
CCCTGTAGGGTAAAATTACTCAAATACCCTTTGCGGTAGAATTACCAAAATACCCCTGTAGTGTA
GAATTACTAAAATACCCCTATAAGGTAGAATTATCGAAATACACCTGTAGGGTAAAATTACCATG
ATAC
Found at i:6953625 original size:27 final size:26
Alignment explanation
Indices: 6953595--6953677 Score: 76
Period size: 27 Copynumber: 3.1 Consensus size: 26
6953585 TGGAGGAAGC
* *
6953595 GTTCTGGTGGCTATGGCACAAATATTT
1 GTTCTGGTGGCTATGCCAC-AATATCT
** *
6953622 GTTCCAGTGGCTCTGCCACAATATCT
1 GTTCTGGTGGCTATGCCACAATATCT
* * *
6953648 GTATCTGGTGACTTTGTCACAATATCT
1 GT-TCTGGTGGCTATGCCACAATATCT
6953675 GTT
1 GTT
6953678 GACCGATCAA
Statistics
Matches: 45, Mismatches: 10, Indels: 3
0.78 0.17 0.05
Matches are distributed among these distances:
26 9 0.20
27 36 0.80
ACGTcount: A:0.20, C:0.20, G:0.22, T:0.37
Consensus pattern (26 bp):
GTTCTGGTGGCTATGCCACAATATCT
Found at i:6953829 original size:20 final size:20
Alignment explanation
Indices: 6953806--6953846 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
6953796 TGTGTGCCGT
*
6953806 TATTGTGGGCTTCGTATCGA
1 TATTGTAGGCTTCGTATCGA
*
6953826 TATTGTAGGCTTCGTGTCGA
1 TATTGTAGGCTTCGTATCGA
6953846 T
1 T
6953847 TATAGACCCG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.15, C:0.15, G:0.29, T:0.41
Consensus pattern (20 bp):
TATTGTAGGCTTCGTATCGA
Found at i:6953973 original size:98 final size:98
Alignment explanation
Indices: 6953730--6953958 Score: 359
Period size: 98 Copynumber: 2.3 Consensus size: 98
6953720 TGTGCCGTTG
* * * * * *
6953730 TTGTAGGTTTCGTGCTGATTATAGACCTGTTATCAATGGATGAGTGTCGATCATGTTACCGAAGG
1 TTGTAGGCTTCGTGCCGATTATAGACCCGTTATCAATGGCTGAGTGCCGATCATGTTACCAAAGG
* *
6953795 CTGTGTGCCGTTATTGTGGGCTTCGTATCGATA
66 CTATGTGCCATTATTGTGGGCTTCGTATCGATA
*
6953828 TTGTAGGCTTCGTGTCGATTATAGACCCGTTATCAATGGCTGAGTGCCGATCATGTTACCAAAGG
1 TTGTAGGCTTCGTGCCGATTATAGACCCGTTATCAATGGCTGAGTGCCGATCATGTTACCAAAGG
*
6953893 CTATGTGCCATTATTGTGGGCTTCGTCTCGATA
66 CTATGTGCCATTATTGTGGGCTTCGTATCGATA
*
6953926 TTGTAGGCTTCGTGCCGACTATAGACCCGTTAT
1 TTGTAGGCTTCGTGCCGATTATAGACCCGTTAT
6953959 TGATGGCTTT
Statistics
Matches: 119, Mismatches: 12, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
98 119 1.00
ACGTcount: A:0.20, C:0.19, G:0.27, T:0.35
Consensus pattern (98 bp):
TTGTAGGCTTCGTGCCGATTATAGACCCGTTATCAATGGCTGAGTGCCGATCATGTTACCAAAGG
CTATGTGCCATTATTGTGGGCTTCGTATCGATA
Found at i:6954018 original size:27 final size:27
Alignment explanation
Indices: 6953988--6954068 Score: 94
Period size: 27 Copynumber: 3.0 Consensus size: 27
6953978 ATTCTGTTAA
* * *
6953988 GTGGCTTTGCCACATTATCTG-ATTCTG
1 GTGGCTCTACCACAATATCTGTA-TCTG
6954015 GTGGCTCTACCACAATATCTGTATCTG
1 GTGGCTCTACCACAATATCTGTATCTG
* *
6954042 GTGACTCTATCACAATATCTGT-TCTG
1 GTGGCTCTACCACAATATCTGTATCTG
6954068 G
1 G
6954069 CAACCATACT
Statistics
Matches: 48, Mismatches: 5, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
26 5 0.10
27 42 0.88
28 1 0.02
ACGTcount: A:0.20, C:0.23, G:0.20, T:0.37
Consensus pattern (27 bp):
GTGGCTCTACCACAATATCTGTATCTG
Found at i:6956369 original size:27 final size:26
Alignment explanation
Indices: 6956259--6956517 Score: 226
Period size: 27 Copynumber: 9.7 Consensus size: 26
6956249 TTTAGTTTAC
*
6956259 TAAAATTACTGAAATACCC-C-AATTG
1 TAAAATTACT-AAATACCCTCGATTTG
* *
6956284 TAAAATTA-TCAAAGTACCC-CGGTTTA
1 TAAAATTACT-AAA-TACCCTCGATTTG
* * *
6956310 TAAAATTATCGAAATACCGTC-AATTG
1 TAAAATTA-CTAAATACCCTCGATTTG
6956336 TAAAATTACTACAATACCCTCGATTTG
1 TAAAATTACTA-AATACCCTCGATTTG
* *
6956363 TAAAATTATCGAAATACCTTC-AGTTTG
1 TAAAATTA-CTAAATACCCTCGA-TTTG
* *
6956390 CAAAATCACTGAAATACCCTCGATTTG
1 TAAAATTACT-AAATACCCTCGATTTG
*
6956417 TTAAATTACTAAAATACCCTCGATTTG
1 TAAAATTACT-AAATACCCTCGATTTG
* *
6956444 TAAAATTACCAAAATACCCTC-AGTTTA
1 TAAAATTA-CTAAATACCCTCGA-TTTG
*
6956471 CAAAATTACTGAAATACCCTCGATTTG
1 TAAAATTACT-AAATACCCTCGATTTG
6956498 TAAAATTACTGAAATACCCT
1 TAAAATTACT-AAATACCCT
6956518 TGTAGGGTAG
Statistics
Matches: 190, Mismatches: 29, Indels: 28
0.77 0.12 0.11
Matches are distributed among these distances:
24 4 0.02
25 16 0.08
26 36 0.19
27 129 0.68
28 5 0.03
ACGTcount: A:0.40, C:0.20, G:0.09, T:0.31
Consensus pattern (26 bp):
TAAAATTACTAAATACCCTCGATTTG
Found at i:6956414 original size:54 final size:54
Alignment explanation
Indices: 6956259--6956517 Score: 259
Period size: 54 Copynumber: 4.9 Consensus size: 54
6956249 TTTAGTTTAC
* * * *
6956259 TAAAATTACTGAAATACCC-C-AATTGTAAAATTA-TCAAAGTACCC-CGGTTTA
1 TAAAATTACTGAAATACCCTCGATTTGTAAAATTACTGAAA-TACCCTCGATTTG
* *
6956310 TAAAATTA-TCGAAATACCGTC-AATTGTAAAATTACT-ACAATACCCTCGATTTG
1 TAAAATTACT-GAAATACCCTCGATTTGTAAAATTACTGA-AATACCCTCGATTTG
* * *
6956363 TAAAATTA-TCGAAATACCTTC-AGTTTGCAAAATCACTGAAATACCCTCGATTTG
1 TAAAATTACT-GAAATACCCTCGA-TTTGTAAAATTACTGAAATACCCTCGATTTG
* * ** *
6956417 TTAAATTACTAAAATACCCTCGATTTGTAAAATTACCAAAATACCCTC-AGTTTA
1 TAAAATTACTGAAATACCCTCGATTTGTAAAATTACTGAAATACCCTCGA-TTTG
*
6956471 CAAAATTACTGAAATACCCTCGATTTGTAAAATTACTGAAATACCCT
1 TAAAATTACTGAAATACCCTCGATTTGTAAAATTACTGAAATACCCT
6956518 TGTAGGGTAG
Statistics
Matches: 178, Mismatches: 20, Indels: 17
0.83 0.09 0.08
Matches are distributed among these distances:
50 1 0.01
51 16 0.09
52 20 0.11
53 30 0.17
54 108 0.61
55 3 0.02
ACGTcount: A:0.40, C:0.20, G:0.09, T:0.31
Consensus pattern (54 bp):
TAAAATTACTGAAATACCCTCGATTTGTAAAATTACTGAAATACCCTCGATTTG
Found at i:6956531 original size:27 final size:27
Alignment explanation
Indices: 6956474--6956788 Score: 317
Period size: 27 Copynumber: 11.9 Consensus size: 27
6956464 CAGTTTACAA
* ** *
6956474 AATTACTGAAATACCCTCG-ATTTGTAA
1 AATTACTGAAATACCCTTGTA-GGGTAG
6956501 AATTACTGAAATACCCTTGTAGGGTAG
1 AATTACTGAAATACCCTTGTAGGGTAG
* * *
6956528 AATTACTAAAATACCAC-TATAGGGTAC
1 AATTACTGAAATACC-CTTGTAGGGTAG
*
6956555 AATTACCGAAATACCCTTGTAGGGTAG
1 AATTACTGAAATACCCTTGTAGGGTAG
**
6956582 AATTACCAAAATACCCTTGTAGGGTAG
1 AATTACTGAAATACCCTTGTAGGGTAG
* *
6956609 AAATACTGAAATACCCCTGTAGGGTAG
1 AATTACTGAAATACCCTTGTAGGGTAG
* * *
6956636 AATTACTAAAATACCCCTATAGGGTAG
1 AATTACTGAAATACCCTTGTAGGGTAG
*
6956663 AATTATTGAAATA------TAGGGTAG
1 AATTACTGAAATACCCTTGTAGGGTAG
* * *
6956684 AAATACCGAAATACCCCTGTAGGGTAG
1 AATTACTGAAATACCCTTGTAGGGTAG
* *
6956711 AATTATTGAAATACCCATGTAGGGTAG
1 AATTACTGAAATACCCTTGTAGGGTAG
* *
6956738 AATTATTGAAATACCCCTGTAGGGTAG
1 AATTACTGAAATACCCTTGTAGGGTAG
*
6956765 AATTA-TCAAGATACCCTTGT-GGGT
1 AATTACTGAA-ATACCCTTGTAGGGT
6956789 GTTAAATGGC
Statistics
Matches: 247, Mismatches: 31, Indels: 21
0.83 0.10 0.07
Matches are distributed among these distances:
21 18 0.07
26 8 0.03
27 219 0.89
28 2 0.01
ACGTcount: A:0.37, C:0.16, G:0.19, T:0.28
Consensus pattern (27 bp):
AATTACTGAAATACCCTTGTAGGGTAG
Found at i:6956532 original size:54 final size:55
Alignment explanation
Indices: 6956420--6956788 Score: 249
Period size: 54 Copynumber: 7.0 Consensus size: 55
6956410 CGATTTGTTA
** * * ** *
6956420 AATTACTAAAATACCCTCGAT-TTGTAAAATTACCAAAATACCC-T-CAGTTTACAA
1 AATTACTAAAATACCCTCGATAGGGTAAAATTACCGAAATACCCTTGTAGGGT--AG
* ** *
6956474 AATTACTGAAATACCCTCGAT-TTGTAAAATTACTGAAATACCCTTGTAGGGTAG
1 AATTACTAAAATACCCTCGATAGGGTAAAATTACCGAAATACCCTTGTAGGGTAG
*
6956528 AATTACTAAAATACCACT--ATAGGGTACAATTACCGAAATACCCTTGTAGGGTAG
1 AATTACTAAAATACC-CTCGATAGGGTAAAATTACCGAAATACCCTTGTAGGGTAG
* * * *
6956582 AATTACCAAAATACCCTTG-TAGGGTAGAAA-TACTGAAATACCCCTGTAGGGTAG
1 AATTACTAAAATACCCTCGATAGGGTA-AAATTACCGAAATACCCTTGTAGGGTAG
* * **
6956636 AATTACTAAAATACCC-CTATAGGGTAGAATTATTGAAATA------TAGGGTAG
1 AATTACTAAAATACCCTCGATAGGGTAAAATTACCGAAATACCCTTGTAGGGTAG
* ** * ** *
6956684 AAATACCGAAATACCC-CTG-TAGGGTAGAATTATTGAAATACCCATGTAGGGTAG
1 AATTACTAAAATACCCTC-GATAGGGTAAAATTACCGAAATACCCTTGTAGGGTAG
* * * *
6956738 AATTATTGAAATACCC-CTG-TAGGGTAGAATTATC-AAGATACCCTTGT-GGGT
1 AATTACTAAAATACCCTC-GATAGGGTAAAATTACCGAA-ATACCCTTGTAGGGT
6956789 GTTAAATGGC
Statistics
Matches: 268, Mismatches: 30, Indels: 35
0.80 0.09 0.11
Matches are distributed among these distances:
48 43 0.16
53 12 0.04
54 205 0.76
55 5 0.02
56 3 0.01
ACGTcount: A:0.38, C:0.17, G:0.17, T:0.28
Consensus pattern (55 bp):
AATTACTAAAATACCCTCGATAGGGTAAAATTACCGAAATACCCTTGTAGGGTAG
Found at i:6956533 original size:81 final size:80
Alignment explanation
Indices: 6956259--6956517 Score: 321
Period size: 81 Copynumber: 3.2 Consensus size: 80
6956249 TTTAGTTTAC
* * * * *
6956259 TAAAATTACTGAAATACCC-C-AATTGTAAAATTATCAAAGTACCC-CGGTTTATAAAATTA-TC
1 TAAAATTACT-AAATACCCTCGATTTGTAAAATTACCAAAATACCCTCAGTTTACAAAATTACT-
* *
6956320 GAAATACCGTC-AATTG
64 GAAATACCCTCGATTTG
* * * * *
6956336 TAAAATTACTACAATACCCTCGATTTGTAAAATTATCGAAATACCTTCAGTTTGCAAAATCACTG
1 TAAAATTACTA-AATACCCTCGATTTGTAAAATTACCAAAATACCCTCAGTTTACAAAATTACTG
6956401 AAATACCCTCGATTTG
65 AAATACCCTCGATTTG
*
6956417 TTAAATTACTAAAATACCCTCGATTTGTAAAATTACCAAAATACCCTCAGTTTACAAAATTACTG
1 TAAAATTACT-AAATACCCTCGATTTGTAAAATTACCAAAATACCCTCAGTTTACAAAATTACTG
6956482 AAATACCCTCGATTTG
65 AAATACCCTCGATTTG
6956498 TAAAATTACTGAAATACCCT
1 TAAAATTACT-AAATACCCT
6956518 TGTAGGGTAG
Statistics
Matches: 157, Mismatches: 18, Indels: 10
0.85 0.10 0.05
Matches are distributed among these distances:
76 1 0.01
77 17 0.11
78 1 0.01
79 20 0.13
80 21 0.13
81 96 0.61
82 1 0.01
ACGTcount: A:0.40, C:0.20, G:0.09, T:0.31
Consensus pattern (80 bp):
TAAAATTACTAAATACCCTCGATTTGTAAAATTACCAAAATACCCTCAGTTTACAAAATTACTGA
AATACCCTCGATTTG
Found at i:6956539 original size:81 final size:81
Alignment explanation
Indices: 6956305--6956624 Score: 251
Period size: 81 Copynumber: 4.0 Consensus size: 81
6956295 AAGTACCCCG
* * * * * ** *
6956305 GTTTATAAAATTA-TCGAAATACCGTC-AATTGTAAAATTACTACAATACCCTCG-ATTTGTAAA
1 GTTTACAAAATTACT-GAAATACCCTCGATTTGTAAAATTACTAAAATACCCTTGTA-GGGTAGA
* *
6956367 ATTA-TCGAAATACCTTCA
64 ATTACT-AAAATACCCTCA
* * * * ** *
6956385 GTTTGCAAAATCACTGAAATACCCTCGATTTGTTAAATTACTAAAATACCCTCG-ATTTGTAAAA
1 GTTTACAAAATTACTGAAATACCCTCGATTTGTAAAATTACTAAAATACCCTTGTA-GGGTAGAA
*
6956449 TTACCAAAATACCCTCA
65 TTACTAAAATACCCTCA
*
6956466 GTTTACAAAATTACTGAAATACCCTCGATTTGTAAAATTACTGAAATACCCTTGTAGGGTAGAAT
1 GTTTACAAAATTACTGAAATACCCTCGATTTGTAAAATTACTAAAATACCCTTGTAGGGTAGAAT
*
6956531 TACTAAAATACCACTATA
66 TACTAAAATACC-CT-CA
** * * ** * *
6956549 GGGTAC--AATTACCGAAATACCCTTG-TAGGGTAGAATTACCAAAATACCCTTGTAGGGTAGAA
1 GTTTACAAAATTACTGAAATACCCTCGAT-TTGTAAAATTACTAAAATACCCTTGTAGGGTAGAA
* *
6956611 ATACTGAAATACCC
65 TTACTAAAATACCC
6956625 CTGTAGGGTA
Statistics
Matches: 202, Mismatches: 31, Indels: 14
0.82 0.13 0.06
Matches are distributed among these distances:
80 22 0.11
81 172 0.85
82 3 0.01
83 5 0.02
ACGTcount: A:0.39, C:0.19, G:0.12, T:0.30
Consensus pattern (81 bp):
GTTTACAAAATTACTGAAATACCCTCGATTTGTAAAATTACTAAAATACCCTTGTAGGGTAGAAT
TACTAAAATACCCTCA
Found at i:6956694 original size:21 final size:21
Alignment explanation
Indices: 6956653--6956696 Score: 61
Period size: 21 Copynumber: 2.1 Consensus size: 21
6956643 AAAATACCCC
* **
6956653 TATAGGGTAGAATTATTGAAA
1 TATAGGGTAGAAATACCGAAA
6956674 TATAGGGTAGAAATACCGAAA
1 TATAGGGTAGAAATACCGAAA
6956695 TA
1 TA
6956697 CCCCTGTAGG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.45, C:0.05, G:0.23, T:0.27
Consensus pattern (21 bp):
TATAGGGTAGAAATACCGAAA
Found at i:6956715 original size:75 final size:75
Alignment explanation
Indices: 6956601--6956750 Score: 255
Period size: 75 Copynumber: 2.0 Consensus size: 75
6956591 AATACCCTTG
* *
6956601 TAGGGTAGAAATACTGAAATACCCCTGTAGGGTAGAATTACTAAAATACCCCTATAGGGTAGAAT
1 TAGGGTAGAAATACCGAAATACCCCTGTAGGGTAGAATTACTAAAATACCCATATAGGGTAGAAT
6956666 TATTGAAATA
66 TATTGAAATA
* * *
6956676 TAGGGTAGAAATACCGAAATACCCCTGTAGGGTAGAATTATTGAAATACCCATGTAGGGTAGAAT
1 TAGGGTAGAAATACCGAAATACCCCTGTAGGGTAGAATTACTAAAATACCCATATAGGGTAGAAT
6956741 TATTGAAATA
66 TATTGAAATA
6956751 CCCCTGTAGG
Statistics
Matches: 70, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
75 70 1.00
ACGTcount: A:0.39, C:0.13, G:0.21, T:0.27
Consensus pattern (75 bp):
TAGGGTAGAAATACCGAAATACCCCTGTAGGGTAGAATTACTAAAATACCCATATAGGGTAGAAT
TATTGAAATA
Found at i:6959635 original size:28 final size:27
Alignment explanation
Indices: 6959578--6959729 Score: 241
Period size: 27 Copynumber: 5.6 Consensus size: 27
6959568 TAAATTGTGC
*
6959578 AGCACTAAGTGTGCGAATTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
6959605 AGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAG-TTGACTATGT
6959633 AGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
*
6959660 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAG-TTGACTATGT
* *
6959688 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGTTGACTATGT
*
6959715 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
6959730 GACTTAATAT
Statistics
Matches: 119, Mismatches: 4, Indels: 4
0.94 0.03 0.03
Matches are distributed among these distances:
27 66 0.55
28 53 0.45
ACGTcount: A:0.26, C:0.14, G:0.29, T:0.31
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGTTGACTATGT
Found at i:6959643 original size:55 final size:55
Alignment explanation
Indices: 6959578--6959729 Score: 259
Period size: 55 Copynumber: 2.8 Consensus size: 55
6959568 TAAATTGTGC
*
6959578 AGCACTAAGTGTGCGAATTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
*
6959633 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
* * *
6959688 AGCACTAAGTGTGCGAGTTGATTATATAGCACTGAGTGTGCG
1 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCG
6959730 GACTTAATAT
Statistics
Matches: 92, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
55 92 1.00
ACGTcount: A:0.26, C:0.14, G:0.29, T:0.31
Consensus pattern (55 bp):
AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
Found at i:6984033 original size:16 final size:16
Alignment explanation
Indices: 6984012--6984042 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
6984002 CAAGTTAGCC
6984012 AATCTGTCAAGAGAGA
1 AATCTGTCAAGAGAGA
6984028 AATCTGTCAAGAGAG
1 AATCTGTCAAGAGAG
6984043 TTTTTTTTAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.42, C:0.13, G:0.26, T:0.19
Consensus pattern (16 bp):
AATCTGTCAAGAGAGA
Found at i:6984478 original size:24 final size:24
Alignment explanation
Indices: 6984446--6984493 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
6984436 GGATTTTCAA
6984446 AAACAATATTCTTTTTAAATACTT
1 AAACAATATTCTTTTTAAATACTT
6984470 AAACAATATTCTTTTTAAATACTT
1 AAACAATATTCTTTTTAAATACTT
6984494 TCATAAAACA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.42, C:0.12, G:0.00, T:0.46
Consensus pattern (24 bp):
AAACAATATTCTTTTTAAATACTT
Found at i:6988120 original size:40 final size:40
Alignment explanation
Indices: 6988065--6988359 Score: 515
Period size: 40 Copynumber: 7.4 Consensus size: 40
6988055 ATGATAACGA
* *
6988065 GGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATTCCG
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-TCCG
6988105 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCG
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCG
6988145 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCG
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCG
6988185 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCG
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCG
6988225 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCG
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCG
6988265 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCG
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCG
6988305 GGCTAAGTCCCGAAGGCATTTGTGCGAG-TAGCTATATCC-
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATATCCG
* *
6988344 GGTTAAATCCCGAAGG
1 GGCTAAGTCCCGAAGG
6988360 TACTTGGTTT
Statistics
Matches: 249, Mismatches: 4, Indels: 5
0.97 0.02 0.02
Matches are distributed among these distances:
39 16 0.06
40 232 0.93
41 1 0.00
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.27
Consensus pattern (40 bp):
GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCG
Found at i:6997511 original size:29 final size:28
Alignment explanation
Indices: 6997464--6997524 Score: 95
Period size: 29 Copynumber: 2.1 Consensus size: 28
6997454 GTGAGCATGA
**
6997464 ATATAAGGTGATTTGGGCCTAATGGGCC
1 ATATAAGGTGATTCAGGCCTAATGGGCC
6997492 ATATAAAGGTGATTCAGGCCTAATGGGCC
1 ATAT-AAGGTGATTCAGGCCTAATGGGCC
6997521 ATAT
1 ATAT
6997525 GAATATGAAT
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
28 4 0.13
29 26 0.87
ACGTcount: A:0.30, C:0.15, G:0.28, T:0.28
Consensus pattern (28 bp):
ATATAAGGTGATTCAGGCCTAATGGGCC
Found at i:7001910 original size:29 final size:28
Alignment explanation
Indices: 7001864--7001924 Score: 95
Period size: 29 Copynumber: 2.1 Consensus size: 28
7001854 GTGAGCATGA
*
7001864 ATATAAGGTGATTTGGGCCTAACGGGCC
1 ATATAAGGTGATTCGGGCCTAACGGGCC
*
7001892 ATATAAAGGTGATTCGGGCCTAATGGGCC
1 ATAT-AAGGTGATTCGGGCCTAACGGGCC
7001921 ATAT
1 ATAT
7001925 GACTATGAAT
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
28 4 0.13
29 26 0.87
ACGTcount: A:0.28, C:0.16, G:0.30, T:0.26
Consensus pattern (28 bp):
ATATAAGGTGATTCGGGCCTAACGGGCC
Found at i:7001939 original size:29 final size:28
Alignment explanation
Indices: 7001876--7001956 Score: 90
Period size: 29 Copynumber: 2.8 Consensus size: 28
7001866 ATAAGGTGAT
* * *
7001876 TTGGGCCTAACGGGCCATATAAAGGTGA
1 TTGGGCCTAATGGGCCATATGAAGATGA
**
7001904 TTCGGGCCTAATGGGCCATATGACTATGAA
1 TT-GGGCCTAATGGGCCATATGAAGATG-A
*
7001934 TTGGGCCTGATGGGCCATATGAA
1 TTGGGCCTAATGGGCCATATGAA
7001957 TAAGATGGGT
Statistics
Matches: 44, Mismatches: 7, Indels: 3
0.81 0.13 0.06
Matches are distributed among these distances:
28 2 0.05
29 39 0.89
30 3 0.07
ACGTcount: A:0.26, C:0.19, G:0.31, T:0.25
Consensus pattern (28 bp):
TTGGGCCTAATGGGCCATATGAAGATGA
Found at i:7004386 original size:12 final size:12
Alignment explanation
Indices: 7004369--7004394 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
7004359 GATACTTGTT
7004369 CTTGATAGTTAC
1 CTTGATAGTTAC
7004381 CTTGATAGTTAC
1 CTTGATAGTTAC
7004393 CT
1 CT
7004395 GTTGCGTTGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.23, C:0.19, G:0.15, T:0.42
Consensus pattern (12 bp):
CTTGATAGTTAC
Found at i:7009059 original size:27 final size:27
Alignment explanation
Indices: 7009029--7009094 Score: 87
Period size: 27 Copynumber: 2.4 Consensus size: 27
7009019 GTAGGCCAGC
* * *
7009029 ATTACTGAAATACCCCTGTAGGGTAGA
1 ATTACTAAAATACCCCTATAAGGTAGA
*
7009056 ATTACTAAAATCCCCCTATAAGGTAGA
1 ATTACTAAAATACCCCTATAAGGTAGA
*
7009083 ATTACCAAAATA
1 ATTACTAAAATA
7009095 TCCTTGGTTT
Statistics
Matches: 33, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 33 1.00
ACGTcount: A:0.41, C:0.20, G:0.14, T:0.26
Consensus pattern (27 bp):
ATTACTAAAATACCCCTATAAGGTAGA
Found at i:7009112 original size:27 final size:27
Alignment explanation
Indices: 7009082--7009286 Score: 250
Period size: 27 Copynumber: 7.6 Consensus size: 27
7009072 TATAAGGTAG
* * **
7009082 AATTACCAAAATATCCTTGGTTTACAA
1 AATTACCAAAATACCCCTGGTTTGTAA
7009109 AATTACCAAAATACCCCTGGTTTGTAA
1 AATTACCAAAATACCCCTGGTTTGTAA
* *
7009136 GATTACCAAAATACCCTTGGTTTGTAA
1 AATTACCAAAATACCCCTGGTTTGTAA
* **
7009163 GATTACCAAAATACCCCTAATTTGTAA
1 AATTACCAAAATACCCCTGGTTTGTAA
* * *
7009190 AATTACCAAAATA-CCCTCGATTAGAAA
1 AATTACCAAAATACCCCT-GGTTTGTAA
7009217 AATTACCAAAATACCCCTGGTTTGTAA
1 AATTACCAAAATACCCCTGGTTTGTAA
* *
7009244 ATTTACCAAAATACCCCTGATTTGTAA
1 AATTACCAAAATACCCCTGGTTTGTAA
**
7009271 AATTACTGAAATACCC
1 AATTACCAAAATACCC
7009287 TTGTAAGGTA
Statistics
Matches: 155, Mismatches: 21, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
26 4 0.03
27 147 0.95
28 4 0.03
ACGTcount: A:0.40, C:0.21, G:0.09, T:0.30
Consensus pattern (27 bp):
AATTACCAAAATACCCCTGGTTTGTAA
Found at i:7009301 original size:27 final size:27
Alignment explanation
Indices: 7009271--7009421 Score: 178
Period size: 27 Copynumber: 5.6 Consensus size: 27
7009261 TGATTTGTAA
* *
7009271 AATTACTGAAATACCCTTGTAAGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
* *
7009298 AATTACCGAAATACCCCTATAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
* *
7009325 AATTATTAAAATACCCCTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
***
7009352 AATTA-TCGAAATACATTTGTAGGGTAG
1 AATTACT-GAAATACCCCTGTAGGGTAG
*
7009379 AAATACTGAAATACCCCTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
* *
7009406 AATTACCGAGATACCC
1 AATTACTGAAATACCC
7009422 TCATGGGGTA
Statistics
Matches: 103, Mismatches: 19, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
26 1 0.01
27 101 0.98
28 1 0.01
ACGTcount: A:0.37, C:0.17, G:0.19, T:0.26
Consensus pattern (27 bp):
AATTACTGAAATACCCCTGTAGGGTAG
Found at i:7009302 original size:81 final size:81
Alignment explanation
Indices: 7009137--7009315 Score: 245
Period size: 81 Copynumber: 2.2 Consensus size: 81
7009127 GGTTTGTAAG
*
7009137 ATTACCAAAATACCCTTGGTTTGTAAGATTACCAAAATACCCCTAATTTGTAAAATTACCAAAAT
1 ATTACCAAAATACCCCTGGTTTGTAAGATTACCAAAATACCCCTAATTTGTAAAATTACCAAAAT
*
7009202 ACCCTCGATTAGAAAA
66 ACCCTCGATAAGAAAA
* **
7009218 ATTACCAAAATACCCCTGGTTTGTAA-ATTTACCAAAATACCCCTGATTTGTAAAATTACTGAAA
1 ATTACCAAAATACCCCTGGTTTGTAAGA-TTACCAAAATACCCCTAATTTGTAAAATTACCAAAA
* * *
7009282 TACCCTTG-TAAGGTAGA
65 TACCCTCGATAA-GAAAA
*
7009299 ATTACCGAAATACCCCT
1 ATTACCAAAATACCCCT
7009316 ATAGGGTAGA
Statistics
Matches: 87, Mismatches: 9, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
80 3 0.03
81 84 0.97
ACGTcount: A:0.39, C:0.22, G:0.10, T:0.29
Consensus pattern (81 bp):
ATTACCAAAATACCCCTGGTTTGTAAGATTACCAAAATACCCCTAATTTGTAAAATTACCAAAAT
ACCCTCGATAAGAAAA
Found at i:7009304 original size:54 final size:54
Alignment explanation
Indices: 7009055--7009365 Score: 179
Period size: 54 Copynumber: 5.8 Consensus size: 54
7009045 TGTAGGGTAG
* * * * * * * **
7009055 AATTACTAAAATCCCCCTATAAGGTAGAATTACCAAAATATCCTTGGTTTACAA
1 AATTACCAAAATACCCTTGTAAGGTAGAATTACCAAAATACCCCTGATTTGTAA
* ** * *
7009109 AATTACCAAAATACCCCTGGT-TTGTA-AGATTACCAAAATACCCTTGGTTTGTAA
1 AATTACCAAAATA-CCCTTGTAAGGTAGA-ATTACCAAAATACCCCTGATTTGTAA
* * * * * *
7009163 GATTACCAAAATACCC--CTAATTTGTAAAATTACCAAAATA-CCCTCGATTAGAAA
1 AATTACCAAAATACCCTTGTAA--GGTAGAATTACCAAAATACCCCT-GATTTGTAA
* **
7009217 AATTACCAAAATACCCCTGGT-TTGTA-AATTTACCAAAATACCCCTGATTTGTAA
1 AATTACCAAAATA-CCCTTGTAAGGTAGAA-TTACCAAAATACCCCTGATTTGTAA
** * ** *
7009271 AATTACTGAAATACCCTTGTAAGGTAGAATTACCGAAATACCCCT-ATAGGGTAG
1 AATTACCAAAATACCCTTGTAAGGTAGAATTACCAAAATACCCCTGAT-TTGTAA
** * * * *
7009325 AATTATTAAAATACCCCTGTAGGGTAGAATTATCGAAATAC
1 AATTACCAAAATACCCTTGTAAGGTAGAATTACCAAAATAC
7009366 ATTTGTAGGG
Statistics
Matches: 206, Mismatches: 36, Indels: 30
0.76 0.13 0.11
Matches are distributed among these distances:
51 1 0.00
53 17 0.08
54 173 0.84
55 14 0.07
57 1 0.00
ACGTcount: A:0.39, C:0.20, G:0.12, T:0.29
Consensus pattern (54 bp):
AATTACCAAAATACCCTTGTAAGGTAGAATTACCAAAATACCCCTGATTTGTAA
Found at i:7009431 original size:81 final size:80
Alignment explanation
Indices: 7009246--7009437 Score: 208
Period size: 81 Copynumber: 2.4 Consensus size: 80
7009236 GTTTGTAAAT
** * *
7009246 TTACCAAAATACCCCTGATTTGTAAAATTA-CTGAAATACCCTTGTAAGGTAGAATTACCGAAAT
1 TTACCAAAATACCCCTGA-GGGTAAAATTATC-GAAATACACTTGTAAGGTAGAAATACCGAAAT
7009310 ACCCCTATAGGGTAGAA
64 ACCCCTATAGGGTAGAA
** * * * *
7009327 TTATTAAAATACCCCTGTAGGGTAGAATTATCGAAATACATTTGTAGGGTAGAAATACTGAAATA
1 TTACCAAAATACCCCTG-AGGGTAAAATTATCGAAATACACTTGTAAGGTAGAAATACCGAAATA
*
7009392 CCCCTGTAGGGTAGAA
65 CCCCTATAGGGTAGAA
* *
7009408 TTACCGAGATACCCTCATG-GGGTAAAATTA
1 TTACCAAAATACCC-C-TGAGGGTAAAATTA
7009438 CCATTTTGCC
Statistics
Matches: 91, Mismatches: 16, Indels: 8
0.79 0.14 0.07
Matches are distributed among these distances:
81 86 0.95
82 3 0.03
83 2 0.02
ACGTcount: A:0.37, C:0.17, G:0.18, T:0.28
Consensus pattern (80 bp):
TTACCAAAATACCCCTGAGGGTAAAATTATCGAAATACACTTGTAAGGTAGAAATACCGAAATAC
CCCTATAGGGTAGAA
Found at i:7010210 original size:27 final size:26
Alignment explanation
Indices: 7010158--7010217 Score: 75
Period size: 27 Copynumber: 2.3 Consensus size: 26
7010148 ATATATATAT
*
7010158 ATATCTGTTCTGGTGGCCTAGCCACA
1 ATATCTGTTCTGGTGACCTAGCCACA
* * *
7010184 ATATCTGTATCTGGTGACTTCGTCACA
1 ATATCTGT-TCTGGTGACCTAGCCACA
7010211 ATATCTG
1 ATATCTG
7010218 GCAGCCTCGC
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 8 0.28
27 21 0.72
ACGTcount: A:0.22, C:0.23, G:0.20, T:0.35
Consensus pattern (26 bp):
ATATCTGTTCTGGTGACCTAGCCACA
Found at i:7017373 original size:11 final size:12
Alignment explanation
Indices: 7017356--7017385 Score: 53
Period size: 11 Copynumber: 2.6 Consensus size: 12
7017346 ACTTTGAGTC
7017356 ATTTTGGTTATG
1 ATTTTGGTTATG
7017368 -TTTTGGTTATG
1 ATTTTGGTTATG
7017379 ATTTTGG
1 ATTTTGG
7017386 CCATAAGATT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
11 11 0.65
12 6 0.35
ACGTcount: A:0.13, C:0.00, G:0.27, T:0.60
Consensus pattern (12 bp):
ATTTTGGTTATG
Found at i:7023616 original size:68 final size:67
Alignment explanation
Indices: 7023544--7023693 Score: 171
Period size: 67 Copynumber: 2.2 Consensus size: 67
7023534 CATCATGTGT
* * * *
7023544 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACC
1 ACAAGAGAGCTAC--GACA-TAT-ATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACC
7023606 ATGTAG
62 ATGTAG
** * *
7023612 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGT
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
7023677 AG
66 AG
7023679 ACAAGAGAGCTACGA
1 ACAAGAGAGCTACGA
7023694 GATAAACTGG
Statistics
Matches: 70, Mismatches: 9, Indels: 7
0.81 0.10 0.08
Matches are distributed among these distances:
64 20 0.29
65 7 0.10
66 4 0.06
67 26 0.37
68 13 0.19
ACGTcount: A:0.33, C:0.17, G:0.29, T:0.21
Consensus pattern (67 bp):
ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
AG
Found at i:7023649 original size:64 final size:64
Alignment explanation
Indices: 7023568--7023751 Score: 194
Period size: 67 Copynumber: 2.8 Consensus size: 64
7023558 AGACATTATG
* *
7023568 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * * *
7023632 ATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
7023697 AA
63 AA
* * * *
7023699 ACTG--GCTAGGTCACATGGGTGGTACTAAGTGTTCACCATGT-GTACAAGAGAGC
1 A-TGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAG-ACAAGAGAGC
7023752 CGAACTATAT
Statistics
Matches: 98, Mismatches: 17, Indels: 11
0.78 0.13 0.09
Matches are distributed among these distances:
62 1 0.01
63 19 0.19
64 21 0.21
65 8 0.08
66 16 0.16
67 31 0.32
68 2 0.02
ACGTcount: A:0.30, C:0.17, G:0.30, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:7028064 original size:68 final size:67
Alignment explanation
Indices: 7027992--7028141 Score: 171
Period size: 67 Copynumber: 2.2 Consensus size: 67
7027982 CATCATGTGT
* * * *
7027992 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACC
1 ACAAGAGAGCTAC--GACA-TAT-ATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACC
7028054 ATGTAG
62 ATGTAG
** * *
7028060 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGT
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
7028125 AG
66 AG
7028127 ACAAGAGAGCTACGA
1 ACAAGAGAGCTACGA
7028142 GATAAACTGG
Statistics
Matches: 70, Mismatches: 9, Indels: 7
0.81 0.10 0.08
Matches are distributed among these distances:
64 20 0.29
65 7 0.10
66 4 0.06
67 26 0.37
68 13 0.19
ACGTcount: A:0.33, C:0.17, G:0.29, T:0.21
Consensus pattern (67 bp):
ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
AG
Found at i:7028097 original size:64 final size:64
Alignment explanation
Indices: 7028016--7028199 Score: 194
Period size: 67 Copynumber: 2.8 Consensus size: 64
7028006 AGACATTATG
* *
7028016 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * * *
7028080 ATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
7028145 AA
63 AA
* * * *
7028147 ACTG--GCTAGGTCACATGGGTGGTACTAAGTGTTCACCATGT-GTACAAGAGAGC
1 A-TGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAG-ACAAGAGAGC
7028200 CGAACTATAT
Statistics
Matches: 98, Mismatches: 17, Indels: 11
0.78 0.13 0.09
Matches are distributed among these distances:
62 1 0.01
63 19 0.19
64 21 0.21
65 8 0.08
66 16 0.16
67 31 0.32
68 2 0.02
ACGTcount: A:0.30, C:0.17, G:0.30, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:7039066 original size:10 final size:10
Alignment explanation
Indices: 7039049--7039095 Score: 58
Period size: 10 Copynumber: 4.7 Consensus size: 10
7039039 AATGCTTATT
7039049 TATTATTTTA
1 TATTATTTTA
*
7039059 TGTTATTTTA
1 TATTATTTTA
* *
7039069 TTTTATTTTT
1 TATTATTTTA
*
7039079 TATTATTTTT
1 TATTATTTTA
7039089 TATTATT
1 TATTATT
7039096 AAAACTACTT
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
10 33 1.00
ACGTcount: A:0.21, C:0.00, G:0.02, T:0.77
Consensus pattern (10 bp):
TATTATTTTA
Found at i:7039071 original size:15 final size:15
Alignment explanation
Indices: 7039048--7039096 Score: 59
Period size: 15 Copynumber: 3.4 Consensus size: 15
7039038 GAATGCTTAT
7039048 TTATTATTTTATGTTA
1 TTATTATTTTAT-TTA
*
7039064 TT-TTATTTTATTTT
1 TTATTATTTTATTTA
7039078 TTATTA-TTT-TTTA
1 TTATTATTTTATTTA
7039091 TTATTA
1 TTATTA
7039097 AAACTACTTT
Statistics
Matches: 30, Mismatches: 2, Indels: 5
0.81 0.05 0.14
Matches are distributed among these distances:
13 9 0.30
14 7 0.23
15 12 0.40
16 2 0.07
ACGTcount: A:0.22, C:0.00, G:0.02, T:0.76
Consensus pattern (15 bp):
TTATTATTTTATTTA
Found at i:7039094 original size:20 final size:20
Alignment explanation
Indices: 7039047--7039095 Score: 64
Period size: 20 Copynumber: 2.5 Consensus size: 20
7039037 AGAATGCTTA
*
7039047 TTTATTATTTTATGTTATTT
1 TTTATTATTTTATATTATTT
*
7039067 TATT-TTATTTTTTATTATTT
1 T-TTATTATTTTATATTATTT
7039087 TTTATTATT
1 TTTATTATT
7039096 AAAACTACTT
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
19 2 0.08
20 21 0.84
21 2 0.08
ACGTcount: A:0.20, C:0.00, G:0.02, T:0.78
Consensus pattern (20 bp):
TTTATTATTTTATATTATTT
Found at i:7041367 original size:16 final size:15
Alignment explanation
Indices: 7041346--7041376 Score: 53
Period size: 16 Copynumber: 2.0 Consensus size: 15
7041336 GGAGTTTTGG
7041346 GTTTTCTTTATGTTTT
1 GTTTTCTTTAT-TTTT
7041362 GTTTTCTTTATTTTT
1 GTTTTCTTTATTTTT
7041377 CTGAGATGTT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 4 0.27
16 11 0.73
ACGTcount: A:0.06, C:0.06, G:0.10, T:0.77
Consensus pattern (15 bp):
GTTTTCTTTATTTTT
Found at i:7058334 original size:20 final size:20
Alignment explanation
Indices: 7058309--7058357 Score: 80
Period size: 20 Copynumber: 2.5 Consensus size: 20
7058299 CACGTCTTTC
*
7058309 TGTAGCAATCTGGTAATCGG
1 TGTAGCAATCTGGTAATCAG
*
7058329 TGTAGCAATCTGGTCATCAG
1 TGTAGCAATCTGGTAATCAG
7058349 TGTAGCAAT
1 TGTAGCAAT
7058358 TTTTGAAAAT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.27, C:0.16, G:0.27, T:0.31
Consensus pattern (20 bp):
TGTAGCAATCTGGTAATCAG
Found at i:7061153 original size:26 final size:26
Alignment explanation
Indices: 7061124--7061175 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
7061114 ACATCGATAC
7061124 ATGAAATACATTATGAATCTTTTCTA
1 ATGAAATACATTATGAATCTTTTCTA
7061150 ATGAAATACATTATGAATCTTTTCTA
1 ATGAAATACATTATGAATCTTTTCTA
7061176 GCTCTGAAGG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.38, C:0.12, G:0.08, T:0.42
Consensus pattern (26 bp):
ATGAAATACATTATGAATCTTTTCTA
Found at i:7066940 original size:17 final size:19
Alignment explanation
Indices: 7066898--7066941 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
7066888 ACGAAATTTT
*
7066898 AATTAGTATTATGAGATAA
1 AATTATTATTATGAGATAA
*
7066917 AATTATTATTATTAGA-AA
1 AATTATTATTATGAGATAA
7066935 AA-TATTA
1 AATTATTA
7066942 CTGCATGTAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
17 5 0.22
18 4 0.17
19 14 0.61
ACGTcount: A:0.50, C:0.00, G:0.09, T:0.41
Consensus pattern (19 bp):
AATTATTATTATGAGATAA
Found at i:7068880 original size:11 final size:11
Alignment explanation
Indices: 7068864--7068888 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
7068854 AAGACGCTCG
7068864 GTAGGATGTAT
1 GTAGGATGTAT
7068875 GTAGGATGTAT
1 GTAGGATGTAT
7068886 GTA
1 GTA
7068889 AACCCTAAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.28, C:0.00, G:0.36, T:0.36
Consensus pattern (11 bp):
GTAGGATGTAT
Found at i:7069444 original size:60 final size:59
Alignment explanation
Indices: 7069319--7069454 Score: 161
Period size: 60 Copynumber: 2.3 Consensus size: 59
7069309 AACTGTGTTA
* *
7069319 ATATGGGCAAGGCCCAATATATCTCGACTTGTATAGGGCTACGGCCCAGATTGATACTG
1 ATATGGGCTAGGCCCAATATATCTCGACTTGTATAGGGCTACGGCCCAGATTAATACTG
* * *
7069378 ATATGGGCTAGGCCCAATATA-CTCTGA-TACTGTA-AGGGGCTATGGCCTAGATTAATATTG
1 ATATGGGCTAGGCCCAATATATCTC-GACT--TGTATA-GGGCTACGGCCCAGATTAATACTG
7069438 ATATGGGCTAAGGCCCA
1 ATATGGGCT-AGGCCCA
7069455 GTTCACACTG
Statistics
Matches: 67, Mismatches: 5, Indels: 8
0.84 0.06 0.10
Matches are distributed among these distances:
58 4 0.06
59 23 0.34
60 33 0.49
61 7 0.10
ACGTcount: A:0.28, C:0.20, G:0.26, T:0.26
Consensus pattern (59 bp):
ATATGGGCTAGGCCCAATATATCTCGACTTGTATAGGGCTACGGCCCAGATTAATACTG
Found at i:7071695 original size:27 final size:28
Alignment explanation
Indices: 7071611--7071708 Score: 162
Period size: 28 Copynumber: 3.5 Consensus size: 28
7071601 TAAATTGTAC
* *
7071611 AGCAGTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAGTTTGATTATAT
7071639 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATTATAT
7071667 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATTATAT
*
7071694 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
7071709 GACTTAATAT
Statistics
Matches: 67, Mismatches: 3, Indels: 1
0.94 0.04 0.01
Matches are distributed among these distances:
27 24 0.36
28 43 0.64
ACGTcount: A:0.27, C:0.11, G:0.30, T:0.33
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATTATAT
Found at i:7071719 original size:27 final size:27
Alignment explanation
Indices: 7071611--7071721 Score: 107
Period size: 28 Copynumber: 4.0 Consensus size: 27
7071601 TAAATTGTAC
* * * *
7071611 AGCAGTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGA-CTTGAATATAT
* *
7071639 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGA-CTTGAATATAT
* *
7071667 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGACTTGAATATAT
*
7071694 AGCACTGAGTGTGCGGACTT-AATATAT
1 AGCACTAAGTGTGC-GACTTGAATATAT
7071721 A
1 A
7071722 CTTTTGAATC
Statistics
Matches: 76, Mismatches: 6, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
27 30 0.39
28 46 0.61
ACGTcount: A:0.29, C:0.11, G:0.27, T:0.33
Consensus pattern (27 bp):
AGCACTAAGTGTGCGACTTGAATATAT
Found at i:7072233 original size:7 final size:7
Alignment explanation
Indices: 7072221--7072310 Score: 171
Period size: 7 Copynumber: 12.7 Consensus size: 7
7072211 GCGTGATCTT
7072221 TTTAGGG
1 TTTAGGG
7072228 TTTAGGG
1 TTTAGGG
7072235 TTTAGGG
1 TTTAGGG
7072242 TTTTAGGG
1 -TTTAGGG
7072250 TTTAGGG
1 TTTAGGG
7072257 TTTAGGG
1 TTTAGGG
7072264 TTTAGGG
1 TTTAGGG
7072271 TTTAGGG
1 TTTAGGG
7072278 TTTAGGG
1 TTTAGGG
7072285 TTTAGGG
1 TTTAGGG
7072292 TTTAGGG
1 TTTAGGG
7072299 TTTAGGG
1 TTTAGGG
7072306 TTTAG
1 TTTAG
7072311 NNNNNNNNNN
Statistics
Matches: 82, Mismatches: 0, Indels: 2
0.98 0.00 0.02
Matches are distributed among these distances:
7 75 0.91
8 7 0.09
ACGTcount: A:0.14, C:0.00, G:0.41, T:0.44
Consensus pattern (7 bp):
TTTAGGG
Found at i:7072932 original size:16 final size:17
Alignment explanation
Indices: 7072902--7072934 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
7072892 CATCAAAAAG
7072902 GGTTTTCAATGAAAACAT
1 GGTTTTCAA-GAAAACAT
7072920 GGTTTTCAA-AAAACA
1 GGTTTTCAAGAAAACA
7072935 CTTCAATGTG
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 6 0.40
18 9 0.60
ACGTcount: A:0.42, C:0.12, G:0.15, T:0.30
Consensus pattern (17 bp):
GGTTTTCAAGAAAACAT
Found at i:7079091 original size:12 final size:12
Alignment explanation
Indices: 7079070--7079101 Score: 55
Period size: 12 Copynumber: 2.7 Consensus size: 12
7079060 CACCCATATG
*
7079070 GCTAGCCCGTGT
1 GCTAGGCCGTGT
7079082 GCTAGGCCGTGT
1 GCTAGGCCGTGT
7079094 GCTAGGCC
1 GCTAGGCC
7079102 ATGCCAAACC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.09, C:0.31, G:0.38, T:0.22
Consensus pattern (12 bp):
GCTAGGCCGTGT
Found at i:7091904 original size:30 final size:30
Alignment explanation
Indices: 7091849--7091905 Score: 78
Period size: 30 Copynumber: 1.9 Consensus size: 30
7091839 CCGAGCCTAA
* *
7091849 GGGCAAAAGTGTAATTATGTAAAAGTTTAG
1 GGGCAAAAATGTAATTATGCAAAAGTTTAG
* *
7091879 GGGCAAAAATGTAATTTTGCCAAAGTT
1 GGGCAAAAATGTAATTATGCAAAAGTT
7091906 CCCAAAAATT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
30 23 1.00
ACGTcount: A:0.39, C:0.07, G:0.25, T:0.30
Consensus pattern (30 bp):
GGGCAAAAATGTAATTATGCAAAAGTTTAG
Found at i:7093671 original size:30 final size:30
Alignment explanation
Indices: 7093615--7093671 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
7093605 TTCCCAAGCC
*
7093615 TAGGGGAAAAAGTGTAATTATGCAAAAGTT
1 TAGGGGAAAAAGTGTAATTATCCAAAAGTT
*
7093645 TAGGGGCAAAAA-TGTAATTTTCCAAAA
1 TAGGGG-AAAAAGTGTAATTATCCAAAA
7093672 ATTCGTATTA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
30 19 0.79
31 5 0.21
ACGTcount: A:0.44, C:0.07, G:0.23, T:0.26
Consensus pattern (30 bp):
TAGGGGAAAAAGTGTAATTATCCAAAAGTT
Found at i:7101115 original size:30 final size:30
Alignment explanation
Indices: 7101079--7101138 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
7101069 TTCCCGAGCC
*
7101079 TAGGGGCAAAAGTGTAATTATGCAAAAGTT
1 TAGGGGCAAAAATGTAATTATGCAAAAGTT
* *
7101109 TAGGGGCAAAAATGTAATTTTGCCAAAGTT
1 TAGGGGCAAAAATGTAATTATGCAAAAGTT
7101139 CGTATTAAAT
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.38, C:0.08, G:0.25, T:0.28
Consensus pattern (30 bp):
TAGGGGCAAAAATGTAATTATGCAAAAGTT
Found at i:7109439 original size:12 final size:12
Alignment explanation
Indices: 7109422--7109460 Score: 60
Period size: 12 Copynumber: 3.2 Consensus size: 12
7109412 CAGTTGAGGA
7109422 ATTTGAGGAGAG
1 ATTTGAGGAGAG
*
7109434 ATTTGAGGAGGG
1 ATTTGAGGAGAG
*
7109446 ATTTTAGGAGAG
1 ATTTGAGGAGAG
7109458 ATT
1 ATT
7109461 AGGGGAGGAA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
12 24 1.00
ACGTcount: A:0.31, C:0.00, G:0.38, T:0.31
Consensus pattern (12 bp):
ATTTGAGGAGAG
Found at i:7109444 original size:24 final size:24
Alignment explanation
Indices: 7109417--7109470 Score: 72
Period size: 24 Copynumber: 2.2 Consensus size: 24
7109407 GTGACCAGTT
*
7109417 GAGGAATTTGAGGAGAGATTTGAG
1 GAGGAATTTGAGGAGAGATTAGAG
* * *
7109441 GAGGGATTTTAGGAGAGATTAGGG
1 GAGGAATTTGAGGAGAGATTAGAG
7109465 GAGGAA
1 GAGGAA
7109471 AAAGTGGAAT
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.33, C:0.00, G:0.44, T:0.22
Consensus pattern (24 bp):
GAGGAATTTGAGGAGAGATTAGAG
Found at i:7110866 original size:27 final size:27
Alignment explanation
Indices: 7110823--7110884 Score: 88
Period size: 27 Copynumber: 2.3 Consensus size: 27
7110813 ACCTCAAATT
* * *
7110823 GGTAAAATGATTGTTTTGCCCTTATGA
1 GGTAAAATGACTATTTTGCCCTTAAGA
*
7110850 GGTAAAATGACTATTTTGCCCTTAAGT
1 GGTAAAATGACTATTTTGCCCTTAAGA
7110877 GGTAAAAT
1 GGTAAAAT
7110885 AACTGAAATG
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 31 1.00
ACGTcount: A:0.31, C:0.11, G:0.21, T:0.37
Consensus pattern (27 bp):
GGTAAAATGACTATTTTGCCCTTAAGA
Found at i:7112818 original size:41 final size:41
Alignment explanation
Indices: 7112669--7112839 Score: 137
Period size: 41 Copynumber: 4.0 Consensus size: 41
7112659 GTAAGATGCC
*
7112669 AATGCCATATCCCAGATATGGTCTTACA-TAAGATCACATAT
1 AATGCCATATCCCAGATATGGTCTTACACGAA-ATCACATAT
* * * * ** * *
7112710 ATCGATGCCGATAGCCTAGCTATGATCTTACACGATGTCCCGTAT
1 A---ATGCC-ATATCCCAGATATGGTCTTACACGAAATCACATAT
* * * * *
7112755 CAATTCCATGTCCCAAACATGGTTTTACACGAAATCACATAT
1 -AATGCCATATCCCAGATATGGTCTTACACGAAATCACATAT
* *
7112797 AATGCCATATCCCAGATATGGTCTTACACAAAATCACACAT
1 AATGCCATATCCCAGATATGGTCTTACACGAAATCACATAT
7112838 AA
1 AA
7112840 CCCTAATGTC
Statistics
Matches: 95, Mismatches: 29, Indels: 12
0.70 0.21 0.09
Matches are distributed among these distances:
41 37 0.39
42 23 0.24
43 4 0.04
44 5 0.05
45 24 0.25
46 2 0.02
ACGTcount: A:0.35, C:0.25, G:0.13, T:0.27
Consensus pattern (41 bp):
AATGCCATATCCCAGATATGGTCTTACACGAAATCACATAT
Done.