Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr9
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 91122320
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2661692 characters in sequence are not A, C, G, or T
File 214 of 279
Found at i:69985778 original size:39 final size:39
Alignment explanation
Indices: 69985724--69985862 Score: 197
Period size: 39 Copynumber: 3.6 Consensus size: 39
69985714 CATATTCACT
* * * *
69985724 TTTAAGTATATATCACATTACTTATATAGTGACAAAACA
1 TTTAAGCATATATCACAATACTTATATAATCACAAAACA
*
69985763 TTTAAGCATCTATCACAATACTTATATAATCACAAAACA
1 TTTAAGCATATATCACAATACTTATATAATCACAAAACA
* * *
69985802 TTTAAGCATATATCACAATACTCATATAATCACAGAATA
1 TTTAAGCATATATCACAATACTTATATAATCACAAAACA
*
69985841 TTTAAGCATATATCGCAATACT
1 TTTAAGCATATATCACAATACT
69985863 CAAAAACATG
Statistics
Matches: 90, Mismatches: 10, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
39 90 1.00
ACGTcount: A:0.44, C:0.17, G:0.06, T:0.33
Consensus pattern (39 bp):
TTTAAGCATATATCACAATACTTATATAATCACAAAACA
Found at i:69985780 original size:22 final size:21
Alignment explanation
Indices: 69985755--69985819 Score: 57
Period size: 22 Copynumber: 3.2 Consensus size: 21
69985745 TTATATAGTG
69985755 ACAAAACATTTAAGCATCTATC
1 ACAAAACATTTAAGCAT-TATC
* * *
69985777 ACAATAC--TT-A-TATAATC
1 ACAAAACATTTAAGCATTATC
69985794 ACAAAACATTTAAGCATATATC
1 ACAAAACATTTAAGCAT-TATC
69985816 ACAA
1 ACAA
69985820 TACTCATATA
Statistics
Matches: 32, Mismatches: 6, Indels: 10
0.67 0.12 0.21
Matches are distributed among these distances:
17 9 0.28
18 2 0.06
19 3 0.09
20 3 0.09
21 2 0.06
22 13 0.41
ACGTcount: A:0.49, C:0.20, G:0.03, T:0.28
Consensus pattern (21 bp):
ACAAAACATTTAAGCATTATC
Found at i:69985796 original size:17 final size:17
Alignment explanation
Indices: 69985774--69985835 Score: 52
Period size: 17 Copynumber: 3.4 Consensus size: 17
69985764 TTAAGCATCT
69985774 ATCACAATACTTATATA
1 ATCACAATACTTATATA
* *
69985791 ATCACAAAACATTTAAGCATA
1 ATCACAATAC--TT-A-TATA
*
69985812 TATCACAATACTCATATA
1 -ATCACAATACTTATATA
69985830 ATCACA
1 ATCACA
69985836 GAATATTTAA
Statistics
Matches: 35, Mismatches: 5, Indels: 10
0.70 0.10 0.20
Matches are distributed among these distances:
17 15 0.43
18 3 0.09
19 3 0.09
20 2 0.06
21 3 0.09
22 9 0.26
ACGTcount: A:0.48, C:0.21, G:0.02, T:0.29
Consensus pattern (17 bp):
ATCACAATACTTATATA
Found at i:69987472 original size:32 final size:32
Alignment explanation
Indices: 69987436--69987528 Score: 177
Period size: 32 Copynumber: 2.9 Consensus size: 32
69987426 TTTTCTAAAA
69987436 AACCATAATCGAAAACATTACCAATAAACCAT
1 AACCATAATCGAAAACATTACCAATAAACCAT
69987468 AACCATAATCGAAAACATTACCAATAAACCAT
1 AACCATAATCGAAAACATTACCAATAAACCAT
*
69987500 GACCATAATCGAAAACATTACCAATAAAC
1 AACCATAATCGAAAACATTACCAATAAAC
69987529 TATGTCACAA
Statistics
Matches: 60, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
32 60 1.00
ACGTcount: A:0.53, C:0.25, G:0.04, T:0.18
Consensus pattern (32 bp):
AACCATAATCGAAAACATTACCAATAAACCAT
Found at i:69987526 original size:19 final size:18
Alignment explanation
Indices: 69987437--69987522 Score: 80
Period size: 18 Copynumber: 5.2 Consensus size: 18
69987427 TTTCTAAAAA
69987437 ACCATAATCGAAAACATT
1 ACCATAATCGAAAACATT
* *
69987455 ACC--AAT--AAACCATA
1 ACCATAATCGAAAACATT
69987469 ACCATAATCGAAAACATT
1 ACCATAATCGAAAACATT
* *
69987487 ACC--AAT--AAACCATG
1 ACCATAATCGAAAACATT
69987501 ACCATAATCGAAAACATT
1 ACCATAATCGAAAACATT
69987519 ACCA
1 ACCA
69987523 ATAAACTATG
Statistics
Matches: 52, Mismatches: 8, Indels: 16
0.68 0.11 0.21
Matches are distributed among these distances:
14 18 0.35
16 12 0.23
18 22 0.42
ACGTcount: A:0.51, C:0.26, G:0.05, T:0.19
Consensus pattern (18 bp):
ACCATAATCGAAAACATT
Found at i:69999205 original size:125 final size:125
Alignment explanation
Indices: 69998983--69999271 Score: 427
Period size: 125 Copynumber: 2.3 Consensus size: 125
69998973 TTTTTTTAAG
* * * * *
69998983 GAAATCACTCCCATGTGAACACACTTTTGCTACAGTAGCTCCTAAAAAAATAATTTTGAGTAGAC
1 GAAATCACTCCCACGTGGACGCACTTTTGCTACAGTAGCTCCTAAAAAAATAATTTCGAGTAGAA
*
69999048 GTTTCTAAGCAAATAATGTCAAAAATGCTTTAAACAGGATGCATTGTCAGCAAAAGTACT
66 GTTTCTAAGCAAATAATGTCAAAAACGCTTTAAACAGGATGCATTGTCAGCAAAAGTACT
* *
69999108 GAAATCGA-TCCCACGTGGACGCGCTTTTGCTACAGTAGCTCCTGAAAAAATAATTTCGAGTAGA
1 GAAATC-ACTCCCACGTGGACGCACTTTTGCTACAGTAGCTCCTAAAAAAATAATTTCGAGTAGA
* * * *
69999172 AGTTTCTGAGCAAATAGTGTCAAAAACGCTTTAAGCAGGATGCTTTGTCAGCAAAAGTACT
65 AGTTTCTAAGCAAATAATGTCAAAAACGCTTTAAACAGGATGCATTGTCAGCAAAAGTACT
* * *
69999233 GAAATCACTTCCATGTGGACGCACTTTTTCTACAGTAGC
1 GAAATCACTCCCACGTGGACGCACTTTTGCTACAGTAGC
69999272 GCATGTTTGG
Statistics
Matches: 146, Mismatches: 16, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
124 1 0.01
125 144 0.99
126 1 0.01
ACGTcount: A:0.34, C:0.20, G:0.18, T:0.28
Consensus pattern (125 bp):
GAAATCACTCCCACGTGGACGCACTTTTGCTACAGTAGCTCCTAAAAAAATAATTTCGAGTAGAA
GTTTCTAAGCAAATAATGTCAAAAACGCTTTAAACAGGATGCATTGTCAGCAAAAGTACT
Found at i:69999829 original size:24 final size:24
Alignment explanation
Indices: 69999802--69999847 Score: 65
Period size: 24 Copynumber: 1.9 Consensus size: 24
69999792 GTAGCGATAT
* *
69999802 GGAATACACATCCTTGACGAAGTA
1 GGAAAACACATCCTTGAAGAAGTA
*
69999826 GGAAAACACTTCCTTGAAGAAG
1 GGAAAACACATCCTTGAAGAAG
69999848 CGTTTTGTCC
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 19 1.00
ACGTcount: A:0.39, C:0.20, G:0.22, T:0.20
Consensus pattern (24 bp):
GGAAAACACATCCTTGAAGAAGTA
Found at i:70000361 original size:123 final size:124
Alignment explanation
Indices: 70000148--70000426 Score: 452
Period size: 123 Copynumber: 2.2 Consensus size: 124
70000138 AGGAAATCGC
* * *
70000148 TCCCACGTAGACGCGTTTTTGCTACAGTAGCTCTTGAAAAAATAATTTCGAGTAGACATTTCTGA
1 TCCCACGTGGACGCGCTTTTGCTACAGTAGCTCCT-AAAAAATAATTTCGAGTAGACATTTCTGA
70000213 GCAAATAGTGTCAAAAACACTTTAAACAGGATGCATTGTCAGCAAAAGTACTGAAATCAA
65 GCAAATAGTGTCAAAAACACTTTAAACAGGATGCATTGTCAGCAAAAGTACTGAAATCAA
* *
70000273 TCCCACGTGGACGCGCTTTTGCTACAATAGCTCCT-AAAAATAATTTCGAGTAGACGTTTCTGAG
1 TCCCACGTGGACGCGCTTTTGCTACAGTAGCTCCTAAAAAATAATTTCGAGTAGACATTTCTGAG
** * * *
70000337 CAAATAGTGTCAAAAATGCTTTAAACAGGATGCATTGTTAGCAAAAGTATTGAAATCGA
66 CAAATAGTGTCAAAAACACTTTAAACAGGATGCATTGTCAGCAAAAGTACTGAAATCAA
70000396 TCCCACGTGGACGCGCTTTTGCTACAGTAGC
1 TCCCACGTGGACGCGCTTTTGCTACAGTAGC
70000427 GCATGTTTGG
Statistics
Matches: 143, Mismatches: 11, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
123 112 0.78
125 31 0.22
ACGTcount: A:0.33, C:0.20, G:0.19, T:0.28
Consensus pattern (124 bp):
TCCCACGTGGACGCGCTTTTGCTACAGTAGCTCCTAAAAAATAATTTCGAGTAGACATTTCTGAG
CAAATAGTGTCAAAAACACTTTAAACAGGATGCATTGTCAGCAAAAGTACTGAAATCAA
Found at i:70001032 original size:7 final size:7
Alignment explanation
Indices: 70001020--70001076 Score: 73
Period size: 7 Copynumber: 8.3 Consensus size: 7
70001010 TGCCCTGCCG
70001020 TTAGGGT
1 TTAGGGT
70001027 TTAGGGT
1 TTAGGGT
70001034 TTAGGG-
1 TTAGGGT
70001040 TTAGGGT
1 TTAGGGT
* *
70001047 TAAGGTT
1 TTAGGGT
70001054 TTAGGGTT
1 TTAGGG-T
70001062 TTA-GGT
1 TTAGGGT
70001068 TTAGGGT
1 TTAGGGT
70001075 TT
1 TT
70001077 TAGAGAAAAA
Statistics
Matches: 43, Mismatches: 4, Indels: 6
0.81 0.08 0.11
Matches are distributed among these distances:
6 10 0.23
7 29 0.67
8 4 0.09
ACGTcount: A:0.16, C:0.00, G:0.39, T:0.46
Consensus pattern (7 bp):
TTAGGGT
Found at i:70001079 original size:14 final size:13
Alignment explanation
Indices: 70001024--70001076 Score: 70
Period size: 13 Copynumber: 3.9 Consensus size: 13
70001014 CTGCCGTTAG
70001024 GGTTTAGGGTTTA
1 GGTTTAGGGTTTA
* *
70001037 GGGTTAGGGTTAA
1 GGTTTAGGGTTTA
70001050 GGTTTTAGGGTTTTA
1 GG-TTTAGGG-TTTA
70001065 GGTTTAGGGTTT
1 GGTTTAGGGTTT
70001077 TAGAGAAAAA
Statistics
Matches: 34, Mismatches: 4, Indels: 4
0.81 0.10 0.10
Matches are distributed among these distances:
13 16 0.47
14 13 0.38
15 5 0.15
ACGTcount: A:0.15, C:0.00, G:0.40, T:0.45
Consensus pattern (13 bp):
GGTTTAGGGTTTA
Found at i:70001464 original size:123 final size:125
Alignment explanation
Indices: 70001250--70001534 Score: 398
Period size: 123 Copynumber: 2.3 Consensus size: 125
70001240 AAGGAAATCG
* * *
70001250 CTCCCACA-TGGACGCGCTTTTTCTACAATAGCTCCTGAAAAAATAATTTCGAATAGACATTTCT
1 CTCCCA-AGTGGACGCGCTTTTGCTACAGTAGCTCATGAAAAAATAATTTCGAATAGACATTTCT
*
70001314 AAGCAAATAGTGTCAAAAACGCTTTAAACAGGATGCATTGTCAGCAAAAGTACTGAAATCAA
65 AAGCAAATAGTGTAAAAAACGCTTTAAACAGGATGCATTGTCAGCAAAAGTACTGAAAT-AA
* * * *
70001376 -TCCCAAGTGGACGCGCTTTTGCTACTGTAGCTCATG-AAAAA-AATTTCGAGTAGACGTTTCTG
1 CTCCCAAGTGGACGCGCTTTTGCTACAGTAGCTCATGAAAAAATAATTTCGAATAGACATTTCTA
* * * *
70001438 AGCAAATAGTGTAAAAAATGCTTTAAATAGGATGCTTTGTTAGCAAAAGTACTGAAATAA
66 AGCAAATAGTGTAAAAAACGCTTTAAACAGGATGCATTGTCAGCAAAAGTACTGAAATAA
* *
70001498 CTCCCACGTGGACGCGCTTTTGCTACAGTAGCGCATG
1 CTCCCAAGTGGACGCGCTTTTGCTACAGTAGCTCATG
70001535 TTTGGCCTGA
Statistics
Matches: 142, Mismatches: 15, Indels: 7
0.87 0.09 0.04
Matches are distributed among these distances:
122 2 0.01
123 104 0.73
124 6 0.04
125 30 0.21
ACGTcount: A:0.34, C:0.20, G:0.19, T:0.27
Consensus pattern (125 bp):
CTCCCAAGTGGACGCGCTTTTGCTACAGTAGCTCATGAAAAAATAATTTCGAATAGACATTTCTA
AGCAAATAGTGTAAAAAACGCTTTAAACAGGATGCATTGTCAGCAAAAGTACTGAAATAA
Found at i:70005885 original size:14 final size:15
Alignment explanation
Indices: 70005868--70005900 Score: 52
Period size: 14 Copynumber: 2.3 Consensus size: 15
70005858 TTATATACAT
70005868 AATACAT-AATACTA
1 AATACATAAATACTA
70005882 AATA-ATAAATACTA
1 AATACATAAATACTA
70005896 AATAC
1 AATAC
70005901 CAATCGACTA
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
13 2 0.12
14 15 0.88
ACGTcount: A:0.61, C:0.12, G:0.00, T:0.27
Consensus pattern (15 bp):
AATACATAAATACTA
Found at i:70007033 original size:14 final size:14
Alignment explanation
Indices: 70007004--70007033 Score: 51
Period size: 15 Copynumber: 2.1 Consensus size: 14
70006994 TTTACGATTT
70007004 AAAAAAAATTTAAA
1 AAAAAAAATTTAAA
70007018 AAAATAAAATTTAAA
1 AAAA-AAAATTTAAA
70007033 A
1 A
70007034 CTTTTTTAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 4 0.27
15 11 0.73
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (14 bp):
AAAAAAAATTTAAA
Found at i:70007099 original size:22 final size:23
Alignment explanation
Indices: 70007074--70007131 Score: 61
Period size: 21 Copynumber: 2.6 Consensus size: 23
70007064 TTTTTTAAAT
70007074 AGGAAATTGAGAG-GAA-ATTGAG
1 AGGAAATTGAGAGAGAATATT-AG
70007096 AGG-AATTG-GAGAGAATATTAG
1 AGGAAATTGAGAGAGAATATTAG
*
70007117 AGATAAATTGAGAGA
1 AG-GAAATTGAGAGA
70007132 AAGGATTAAG
Statistics
Matches: 30, Mismatches: 1, Indels: 8
0.77 0.03 0.21
Matches are distributed among these distances:
20 3 0.10
21 12 0.40
22 6 0.20
23 5 0.17
24 4 0.13
ACGTcount: A:0.47, C:0.00, G:0.33, T:0.21
Consensus pattern (23 bp):
AGGAAATTGAGAGAGAATATTAG
Found at i:70007129 original size:10 final size:10
Alignment explanation
Indices: 70007076--70007133 Score: 62
Period size: 11 Copynumber: 5.4 Consensus size: 10
70007066 TTTTAAATAG
70007076 GAAATTGAGA
1 GAAATTGAGA
70007086 GGAAATTGAGA
1 -GAAATTGAGA
*
70007097 GGAATTGGAGA
1 GAAATT-GAGA
70007108 GAATATTAGAGA
1 GAA-ATT-GAGA
*
70007120 TAAATTGAGA
1 GAAATTGAGA
70007130 GAAA
1 GAAA
70007134 GGATTAAGTT
Statistics
Matches: 40, Mismatches: 5, Indels: 5
0.80 0.10 0.10
Matches are distributed among these distances:
10 12 0.30
11 19 0.47
12 9 0.22
ACGTcount: A:0.48, C:0.00, G:0.31, T:0.21
Consensus pattern (10 bp):
GAAATTGAGA
Found at i:70007865 original size:18 final size:18
Alignment explanation
Indices: 70007841--70007879 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 18
70007831 AAAATAAAAT
*
70007841 TATATAATTGTAGGATTTAA
1 TATA-AATTG-AGCATTTAA
70007861 TATAAATTGAGCATTTAA
1 TATAAATTGAGCATTTAA
70007879 T
1 T
70007880 CTATTTTACC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 9 0.50
19 5 0.28
20 4 0.22
ACGTcount: A:0.41, C:0.03, G:0.13, T:0.44
Consensus pattern (18 bp):
TATAAATTGAGCATTTAA
Found at i:70017401 original size:14 final size:15
Alignment explanation
Indices: 70017374--70017408 Score: 54
Period size: 14 Copynumber: 2.4 Consensus size: 15
70017364 TTGGGTGAGT
*
70017374 TTTTTATTTATTATA
1 TTTTAATTTATTATA
70017389 TTTTAATTT-TTATA
1 TTTTAATTTATTATA
70017403 TTTTAA
1 TTTTAA
70017409 ATGTGAAAGT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 11 0.58
15 8 0.42
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (15 bp):
TTTTAATTTATTATA
Found at i:70018223 original size:19 final size:20
Alignment explanation
Indices: 70018199--70018246 Score: 64
Period size: 19 Copynumber: 2.5 Consensus size: 20
70018189 TTATAATTTA
*
70018199 AAAATTAAGTAAATT-AATT
1 AAAATTAAGTAAATTAAAGT
*
70018218 AAAATTAA-TTAATTAAAGT
1 AAAATTAAGTAAATTAAAGT
70018237 AAAATTAAGT
1 AAAATTAAGT
70018247 TAGAGAAAAT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
18 5 0.20
19 19 0.76
20 1 0.04
ACGTcount: A:0.58, C:0.00, G:0.06, T:0.35
Consensus pattern (20 bp):
AAAATTAAGTAAATTAAAGT
Found at i:70020027 original size:38 final size:38
Alignment explanation
Indices: 70019936--70020019 Score: 123
Period size: 38 Copynumber: 2.2 Consensus size: 38
70019926 AGAACATGAA
** *
70019936 TACATATTAAACATGTTTACTTTTAATGATGAATTGCG
1 TACATATTAAACATGTTTACGATTAATGATGAATTGAG
* *
70019974 TACATGTTAAACATGTTTACGATTAGTGATGAATTGAG
1 TACATATTAAACATGTTTACGATTAATGATGAATTGAG
70020012 TACATATT
1 TACATATT
70020020 GTACATGTCT
Statistics
Matches: 40, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
38 40 1.00
ACGTcount: A:0.35, C:0.10, G:0.15, T:0.40
Consensus pattern (38 bp):
TACATATTAAACATGTTTACGATTAATGATGAATTGAG
Found at i:70020039 original size:38 final size:38
Alignment explanation
Indices: 70019936--70020039 Score: 93
Period size: 38 Copynumber: 2.7 Consensus size: 38
70019926 AGAACATGAA
* *** * *
70019936 TACATATTAAACATGTTTACTTTTAATGATGAATTGCG
1 TACATATTAAACATGTCTACGACTAGTGATGAATTGAG
* * *
70019974 TACATGTTAAACATGTTTACGATTAGTGATGAATTGAG
1 TACATATTAAACATGTCTACGACTAGTGATGAATTGAG
**
70020012 TACATATTGTACATGTCTACTG-CTAGTG
1 TACATATTAAACATGTCTAC-GACTAGTG
70020040 TTGAGTTGTT
Statistics
Matches: 55, Mismatches: 10, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
38 54 0.98
39 1 0.02
ACGTcount: A:0.32, C:0.12, G:0.17, T:0.39
Consensus pattern (38 bp):
TACATATTAAACATGTCTACGACTAGTGATGAATTGAG
Found at i:70020255 original size:43 final size:43
Alignment explanation
Indices: 70020166--70020299 Score: 133
Period size: 43 Copynumber: 3.1 Consensus size: 43
70020156 GTATTTTTCC
* * * **
70020166 TTTAACTGCAAGTATGTTGTGCATCCAGAACCTAGTGGCAGCT
1 TTTAACTGCAATTATGTTGTGCATCCACAGCCTAGTGGCAAAT
* * *
70020209 TTTACCTGCAATTATGTAGTGCATCCACAGTCTAGTGGCAAAT
1 TTTAACTGCAATTATGTTGTGCATCCACAGCCTAGTGGCAAAT
** * * * *
70020252 TTTATTTGCGAATTTTGTTGTGTACCCATAGCCTAGTGGCAAAT
1 TTTAACTGC-AATTATGTTGTGCATCCACAGCCTAGTGGCAAAT
70020296 TTTA
1 TTTA
70020300 TTTGCGAATT
Statistics
Matches: 74, Mismatches: 16, Indels: 1
0.81 0.18 0.01
Matches are distributed among these distances:
43 42 0.57
44 32 0.43
ACGTcount: A:0.25, C:0.19, G:0.20, T:0.36
Consensus pattern (43 bp):
TTTAACTGCAATTATGTTGTGCATCCACAGCCTAGTGGCAAAT
Found at i:70020385 original size:44 final size:44
Alignment explanation
Indices: 70020231--70020393 Score: 125
Period size: 44 Copynumber: 3.8 Consensus size: 44
70020221 TATGTAGTGC
* * * * * *
70020231 ATCCACAGTCTAGTGGCAAATTTTATTTGCGAATTTTGTTGTGT
1 ATCCACAGCCCAGTGGCAAATTTTATCTGCAAATTTTGCTATGT
* * * * *
70020275 ACCCATAGCCTAGTGGCAAATTTTATTTGCGAATTTT-CTATGT
1 ATCCACAGCCCAGTGGCAAATTTTATCTGCAAATTTTGCTATGT
* * ** ***
70020318 ATTCATAGTTCA-TCGGTTGATTTTATCTGCAAATTTTGCTATGT
1 ATCCACAGCCCAGT-GGCAAATTTTATCTGCAAATTTTGCTATGT
*
70020362 ATCCACAGCCCAGTGGCGAATTTT-TCTGCAAA
1 ATCCACAGCCCAGTGGCAAATTTTATCTGCAAA
70020394 CCAGTGATGG
Statistics
Matches: 94, Mismatches: 22, Indels: 7
0.76 0.18 0.06
Matches are distributed among these distances:
42 1 0.01
43 37 0.39
44 55 0.59
45 1 0.01
ACGTcount: A:0.25, C:0.18, G:0.18, T:0.40
Consensus pattern (44 bp):
ATCCACAGCCCAGTGGCAAATTTTATCTGCAAATTTTGCTATGT
Found at i:70021391 original size:91 final size:90
Alignment explanation
Indices: 70021253--70021479 Score: 257
Period size: 91 Copynumber: 2.5 Consensus size: 90
70021243 TCAGGGTGCA
* * * * ** * *
70021253 AAAAGCCCTCAAA-CTTTT-TCAAAAAAAGCAATTGAGCCTTTGGTTTTTTTTGCACTCATTTGG
1 AAAAGCCCTTAAACCTTTTCTAAAAAAAAGCAATTAAGCCCTTACTTTTTTTTGCACTCAATTCG
70021316 GTACTTGAACTTTCAAAATGCAT-C
66 GTACTTGAACTTTCAAAATGCATCC
*
70021340 AGAAAGGCCCTTAAACCTTTTCTAAAAAAAAGCAATTAATCCCTTACTTTTTTTTGCACTCAATT
1 A-AAA-GCCCTTAAACCTTTTCTAAAAAAAAGCAATTAAGCCCTTACTTTTTTTTGCACTCAATT
*
70021405 CGGTACTTGAACTTTCAAAATGTATCC
64 CGGTACTTGAACTTTCAAAATGCATCC
* * * * *
70021432 AAAAGACCTTCAAACTTTTTC-AGAAAAAA-CAATTAAGCCATTGCTTTT
1 AAAAGCCCTT-AAACCTTTTCTAAAAAAAAGCAATTAAGCCCTTACTTTT
70021480 ATTAAAAATT
Statistics
Matches: 118, Mismatches: 16, Indels: 10
0.82 0.11 0.07
Matches are distributed among these distances:
87 1 0.01
88 3 0.03
89 24 0.20
90 17 0.14
91 71 0.60
92 2 0.02
ACGTcount: A:0.34, C:0.20, G:0.11, T:0.34
Consensus pattern (90 bp):
AAAAGCCCTTAAACCTTTTCTAAAAAAAAGCAATTAAGCCCTTACTTTTTTTTGCACTCAATTCG
GTACTTGAACTTTCAAAATGCATCC
Found at i:70021629 original size:10 final size:10
Alignment explanation
Indices: 70021612--70021637 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
70021602 TCTTAAAAAA
70021612 TATAAAATTT
1 TATAAAATTT
70021622 TATAAAATTT
1 TATAAAATTT
70021632 TATAAA
1 TATAAA
70021638 GTTGTAAGAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (10 bp):
TATAAAATTT
Found at i:70021884 original size:29 final size:28
Alignment explanation
Indices: 70021827--70021881 Score: 101
Period size: 28 Copynumber: 2.0 Consensus size: 28
70021817 CCAGGGGTCG
*
70021827 TTATTTTTTTATGATTTTTATAAAAAAT
1 TTATTTATTTATGATTTTTATAAAAAAT
70021855 TTATTTATTTATGATTTTTATAAAAAA
1 TTATTTATTTATGATTTTTATAAAAAA
70021882 ATTCTAATTT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
28 26 1.00
ACGTcount: A:0.38, C:0.00, G:0.04, T:0.58
Consensus pattern (28 bp):
TTATTTATTTATGATTTTTATAAAAAAT
Found at i:70021894 original size:29 final size:27
Alignment explanation
Indices: 70021832--70021894 Score: 90
Period size: 28 Copynumber: 2.2 Consensus size: 27
70021822 GGTCGTTATT
*
70021832 TTTTTATGATTTTTATAAAAAATTTAT
1 TTTTTATGATTTTTATAAAAAATTTAA
70021859 TTATTTATGATTTTTATAAAAAAATTCTAA
1 TT-TTTATGATTTTTAT-AAAAAATT-TAA
70021889 TTTTTA
1 TTTTTA
70021895 ATAAATTTTA
Statistics
Matches: 32, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
27 2 0.06
28 14 0.44
29 12 0.38
30 4 0.12
ACGTcount: A:0.38, C:0.02, G:0.03, T:0.57
Consensus pattern (27 bp):
TTTTTATGATTTTTATAAAAAATTTAA
Found at i:70036591 original size:25 final size:23
Alignment explanation
Indices: 70036557--70036604 Score: 69
Period size: 25 Copynumber: 2.0 Consensus size: 23
70036547 CTCGAGTGGT
*
70036557 AGGGGAAGGATACAATCAGCAGG
1 AGGGAAAGGATACAATCAGCAGG
70036580 NNAGGGAAAGGATACAATCAGCAGG
1 --AGGGAAAGGATACAATCAGCAGG
70036605 CTAGAATTGA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.40, C:0.12, G:0.35, T:0.08
Consensus pattern (23 bp):
AGGGAAAGGATACAATCAGCAGG
Found at i:70038015 original size:4 final size:4
Alignment explanation
Indices: 70038006--70038039 Score: 68
Period size: 4 Copynumber: 8.5 Consensus size: 4
70037996 AGTATACATA
70038006 AGTT AGTT AGTT AGTT AGTT AGTT AGTT AGTT AG
1 AGTT AGTT AGTT AGTT AGTT AGTT AGTT AGTT AG
70038040 CAGACAATCT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 30 1.00
ACGTcount: A:0.26, C:0.00, G:0.26, T:0.47
Consensus pattern (4 bp):
AGTT
Found at i:70049730 original size:42 final size:43
Alignment explanation
Indices: 70049684--70049783 Score: 130
Period size: 43 Copynumber: 2.3 Consensus size: 43
70049674 TTTTTGCAAG
* * *
70049684 AAGCGTCGCTAAAGGTT-TGTTCTATAGCGGCGTTTGTGGTAA
1 AAGCGTCGCTAAAGGTTCTGATCTATAGCGGCGTTTCTCGTAA
* * *
70049726 AAGCGTTGCTAAAGATTCTGATCTATAGTGGCGTTTCTCGTAA
1 AAGCGTCGCTAAAGGTTCTGATCTATAGCGGCGTTTCTCGTAA
*
70049769 AAGCATCGCTAAAGG
1 AAGCGTCGCTAAAGG
70049784 CCATGGTCTT
Statistics
Matches: 48, Mismatches: 9, Indels: 1
0.83 0.16 0.02
Matches are distributed among these distances:
42 15 0.31
43 33 0.69
ACGTcount: A:0.26, C:0.16, G:0.27, T:0.31
Consensus pattern (43 bp):
AAGCGTCGCTAAAGGTTCTGATCTATAGCGGCGTTTCTCGTAA
Found at i:70049760 original size:43 final size:41
Alignment explanation
Indices: 70049666--70049782 Score: 126
Period size: 43 Copynumber: 2.8 Consensus size: 41
70049656 GTTATGTTTT
* * * *
70049666 TAGTGGCGTTTTTGCAAGAAGCGTCGCTAAAGGTTTGTTCTA
1 TAGTGGCGTTTTCGTAA-AAGCGTCGCTAAAGATTTGATCTA
* * *
70049708 TAGCGGCGTTTGTGGTAAAAGCGTTGCTAAAGATTCTGATCTA
1 TAGTGGCGTTT-TCGTAAAAGCGTCGCTAAAGATT-TGATCTA
*
70049751 TAGTGGCGTTTCTCGTAAAAGCATCGCTAAAG
1 TAGTGGCGTTT-TCGTAAAAGCGTCGCTAAAG
70049783 GCCATGGTCT
Statistics
Matches: 62, Mismatches: 11, Indels: 3
0.82 0.14 0.04
Matches are distributed among these distances:
42 25 0.40
43 37 0.60
ACGTcount: A:0.25, C:0.15, G:0.27, T:0.32
Consensus pattern (41 bp):
TAGTGGCGTTTTCGTAAAAGCGTCGCTAAAGATTTGATCTA
Found at i:70049971 original size:21 final size:21
Alignment explanation
Indices: 70049945--70049989 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
70049935 TTTAGCGGCG
* * *
70049945 CTAAAAGGTGCCACTAAAGGC
1 CTAAAAAGCGCCACTAAAAGC
*
70049966 CTAAAAAGCGCCGCTAAAAGC
1 CTAAAAAGCGCCACTAAAAGC
70049987 CTA
1 CTA
70049990 TTTTGGTGCA
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.40, C:0.27, G:0.20, T:0.13
Consensus pattern (21 bp):
CTAAAAAGCGCCACTAAAAGC
Found at i:70054343 original size:14 final size:14
Alignment explanation
Indices: 70054324--70054363 Score: 53
Period size: 14 Copynumber: 2.9 Consensus size: 14
70054314 TTGATTGCCA
70054324 GTAAAATGTTTTCC
1 GTAAAATGTTTTCC
* *
70054338 GTAAAATGATTTCT
1 GTAAAATGTTTTCC
*
70054352 GGAAAATGTTTT
1 GTAAAATGTTTT
70054364 ACTTTTCTGT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.33, C:0.07, G:0.17, T:0.42
Consensus pattern (14 bp):
GTAAAATGTTTTCC
Found at i:70054372 original size:20 final size:20
Alignment explanation
Indices: 70054347--70054386 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
70054337 CGTAAAATGA
*
70054347 TTTCTGGAAAATGTTTTACT
1 TTTCTGGAAAATGATTTACT
*
70054367 TTTCTGTAAAATGATTTACT
1 TTTCTGGAAAATGATTTACT
70054387 GGAAAATATT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.28, C:0.10, G:0.12, T:0.50
Consensus pattern (20 bp):
TTTCTGGAAAATGATTTACT
Found at i:70054376 original size:34 final size:35
Alignment explanation
Indices: 70054332--70054398 Score: 109
Period size: 34 Copynumber: 1.9 Consensus size: 35
70054322 CAGTAAAATG
*
70054332 TTTTCCGTAAAATGATTT-CTGGAAAATGTTTTAC
1 TTTTCCGTAAAATGATTTACTGGAAAATATTTTAC
*
70054366 TTTTCTGTAAAATGATTTACTGGAAAATATTTT
1 TTTTCCGTAAAATGATTTACTGGAAAATATTTT
70054399 CTGGTGTTTG
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
34 17 0.57
35 13 0.43
ACGTcount: A:0.31, C:0.09, G:0.13, T:0.46
Consensus pattern (35 bp):
TTTTCCGTAAAATGATTTACTGGAAAATATTTTAC
Found at i:70054402 original size:14 final size:15
Alignment explanation
Indices: 70054326--70054402 Score: 52
Period size: 14 Copynumber: 5.0 Consensus size: 15
70054316 GATTGCCAGT
* *
70054326 AAAATG-TTTTCCGT
1 AAAATGATTTTCTGG
70054340 AAAATGA-TTTCTGG
1 AAAATGATTTTCTGG
*
70054354 AAAATGTTTTACTTTTCTGT
1 AAAATG----A-TTTTCTGG
*
70054374 AAAATGATTTACTGG
1 AAAATGATTTTCTGG
70054389 AAAAT-ATTTTCTGG
1 AAAATGATTTTCTGG
70054403 TGTTTGATTG
Statistics
Matches: 50, Mismatches: 6, Indels: 14
0.71 0.09 0.20
Matches are distributed among these distances:
14 25 0.50
15 11 0.22
16 1 0.02
18 1 0.02
20 12 0.24
ACGTcount: A:0.32, C:0.09, G:0.16, T:0.43
Consensus pattern (15 bp):
AAAATGATTTTCTGG
Found at i:70056948 original size:12 final size:12
Alignment explanation
Indices: 70056931--70056984 Score: 56
Period size: 12 Copynumber: 4.4 Consensus size: 12
70056921 CAAAACGGGA
70056931 AAGGGAAGGGGT
1 AAGGGAAGGGGT
70056943 AAGGGAAAGGGGT
1 AAGGG-AAGGGGT
* *
70056956 AGGGGAAAGGG-
1 AAGGGAAGGGGT
*
70056967 AAGGAGAAGGGGA
1 AAGG-GAAGGGGT
70056980 AAGGG
1 AAGGG
70056985 GAGAAGAATG
Statistics
Matches: 35, Mismatches: 4, Indels: 6
0.78 0.09 0.13
Matches are distributed among these distances:
11 3 0.09
12 17 0.49
13 15 0.43
ACGTcount: A:0.39, C:0.00, G:0.57, T:0.04
Consensus pattern (12 bp):
AAGGGAAGGGGT
Found at i:70056950 original size:18 final size:18
Alignment explanation
Indices: 70056927--70056984 Score: 73
Period size: 18 Copynumber: 3.2 Consensus size: 18
70056917 GCTTCAAAAC
*
70056927 GGGAAAGGGAAGGGGTAA
1 GGGAAAGGGAAGGGGAAA
*
70056945 GGGAAAGGGGTAGGGGAAA
1 GGGAAA-GGGAAGGGGAAA
70056964 GGG-AAGGAGAAGGGGAAA
1 GGGAAAGG-GAAGGGGAAA
70056982 GGG
1 GGG
70056985 GAGAAGAATG
Statistics
Matches: 35, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
17 2 0.06
18 20 0.57
19 13 0.37
ACGTcount: A:0.38, C:0.00, G:0.59, T:0.03
Consensus pattern (18 bp):
GGGAAAGGGAAGGGGAAA
Found at i:70056954 original size:13 final size:13
Alignment explanation
Indices: 70056931--70056966 Score: 56
Period size: 13 Copynumber: 2.8 Consensus size: 13
70056921 CAAAACGGGA
70056931 AAGGG-AAGGGGT
1 AAGGGAAAGGGGT
70056943 AAGGGAAAGGGGT
1 AAGGGAAAGGGGT
*
70056956 AGGGGAAAGGG
1 AAGGGAAAGGG
70056967 AAGGAGAAGG
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
12 5 0.23
13 17 0.77
ACGTcount: A:0.36, C:0.00, G:0.58, T:0.06
Consensus pattern (13 bp):
AAGGGAAAGGGGT
Found at i:70056965 original size:31 final size:31
Alignment explanation
Indices: 70056927--70056985 Score: 93
Period size: 31 Copynumber: 1.9 Consensus size: 31
70056917 GCTTCAAAAC
*
70056927 GGGAAAGGGAAGGGGTAA-GGGAAAGGGGTAG
1 GGGAAAGGGAAGGAG-AAGGGGAAAGGGGTAG
70056958 GGGAAAGGGAAGGAGAAGGGGAAAGGGG
1 GGGAAAGGGAAGGAGAAGGGGAAAGGGG
70056986 AGAAGAATGG
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
30 2 0.08
31 24 0.92
ACGTcount: A:0.37, C:0.00, G:0.59, T:0.03
Consensus pattern (31 bp):
GGGAAAGGGAAGGAGAAGGGGAAAGGGGTAG
Found at i:70056992 original size:18 final size:18
Alignment explanation
Indices: 70056956--70056992 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
70056946 GGAAAGGGGT
*
70056956 AGGGGAAAGGGAAGGAGA
1 AGGGGAAAGGGAAGAAGA
*
70056974 AGGGGAAAGGGGAGAAGA
1 AGGGGAAAGGGAAGAAGA
70056992 A
1 A
70056993 TGGGTCATTT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.46, C:0.00, G:0.54, T:0.00
Consensus pattern (18 bp):
AGGGGAAAGGGAAGAAGA
Found at i:70061868 original size:18 final size:20
Alignment explanation
Indices: 70061827--70061869 Score: 54
Period size: 18 Copynumber: 2.2 Consensus size: 20
70061817 TATATTTATG
70061827 TATATTATGTCTATATTTTAA
1 TATATTATG-CTATATTTTAA
*
70061848 TATATTATG-TAT-TTTTTA
1 TATATTATGCTATATTTTAA
70061866 TATA
1 TATA
70061870 AATCATGTAC
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
18 9 0.43
19 3 0.14
21 9 0.43
ACGTcount: A:0.33, C:0.02, G:0.05, T:0.60
Consensus pattern (20 bp):
TATATTATGCTATATTTTAA
Found at i:70063960 original size:17 final size:17
Alignment explanation
Indices: 70063938--70063998 Score: 60
Period size: 17 Copynumber: 3.8 Consensus size: 17
70063928 ACAATAATAT
70063938 AAAATA-ATGATATGTAC
1 AAAATATAT-ATATGTAC
70063955 AAAATATATATATGTAC
1 AAAATATATATATGTAC
*
70063972 ATAATATAGT-TA--TA-
1 AAAATATA-TATATGTAC
70063986 AAAATATATATAT
1 AAAATATATATAT
70063999 TAAATTCGGA
Statistics
Matches: 38, Mismatches: 2, Indels: 10
0.76 0.04 0.20
Matches are distributed among these distances:
13 1 0.03
14 9 0.24
15 2 0.05
17 23 0.61
18 3 0.08
ACGTcount: A:0.54, C:0.03, G:0.07, T:0.36
Consensus pattern (17 bp):
AAAATATATATATGTAC
Found at i:70064178 original size:15 final size:16
Alignment explanation
Indices: 70064143--70064184 Score: 59
Period size: 15 Copynumber: 2.7 Consensus size: 16
70064133 TTTTTTGTTG
70064143 TTTTTTTTGCTGGAAA
1 TTTTTTTTGCTGGAAA
* *
70064159 ATTTTTTTGCT-GAAT
1 TTTTTTTTGCTGGAAA
70064174 TTTTTTTTGCT
1 TTTTTTTTGCT
70064185 CTTTTTTCTC
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
15 13 0.57
16 10 0.43
ACGTcount: A:0.14, C:0.07, G:0.14, T:0.64
Consensus pattern (16 bp):
TTTTTTTTGCTGGAAA
Found at i:70064464 original size:30 final size:30
Alignment explanation
Indices: 70064389--70064524 Score: 140
Period size: 30 Copynumber: 4.6 Consensus size: 30
70064379 CAAAACTTCT
* *
70064389 GGGG-CTAAATGTAATTTTTAGAAAA-TTTA
1 GGGGTCTAAATG-AAATTTAAGAAAAGTTTA
*
70064418 -GGGT-TAAAATGCAATTTAAGAAAAGTTTA
1 GGGGTCT-AAATGAAATTTAAGAAAAGTTTA
70064447 GGGGTCTAAATGAAATTTAA-AGAAAGTTTA
1 GGGGTCTAAATGAAATTTAAGA-AAAGTTTA
* * *
70064477 AGGGTCAAAATGAAATTTAGGAAAAGTTTA
1 GGGGTCTAAATGAAATTTAAGAAAAGTTTA
70064507 GGGGT-TAAAATGAAATTT
1 GGGGTCT-AAATGAAATTT
70064525 TTATTTTTAT
Statistics
Matches: 90, Mismatches: 9, Indels: 15
0.79 0.08 0.13
Matches are distributed among these distances:
28 14 0.16
29 10 0.11
30 64 0.71
31 2 0.02
ACGTcount: A:0.43, C:0.03, G:0.23, T:0.32
Consensus pattern (30 bp):
GGGGTCTAAATGAAATTTAAGAAAAGTTTA
Found at i:70064495 original size:60 final size:59
Alignment explanation
Indices: 70064389--70064524 Score: 177
Period size: 60 Copynumber: 2.3 Consensus size: 59
70064379 CAAAACTTCT
* ** * *
70064389 GGGG-CTAAATGTAATTTTTAGAAAATTTAGGGTTAAAATGCAATTTAAGAAAAGTTTA
1 GGGGTCTAAATGAAATTTAAAGAAAATTTAGGGTCAAAATGAAATTTAAGAAAAGTTTA
* *
70064447 GGGGTCTAAATGAAATTTAAAGAAAGTTTAAGGGTCAAAATGAAATTTAGGAAAAGTTTA
1 GGGGTCTAAATGAAATTTAAAGAAAATTT-AGGGTCAAAATGAAATTTAAGAAAAGTTTA
70064507 GGGGT-TAAAATGAAATTT
1 GGGGTCT-AAATGAAATTT
70064525 TTATTTTTAT
Statistics
Matches: 68, Mismatches: 7, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
58 4 0.06
59 21 0.31
60 43 0.63
ACGTcount: A:0.43, C:0.03, G:0.23, T:0.32
Consensus pattern (59 bp):
GGGGTCTAAATGAAATTTAAAGAAAATTTAGGGTCAAAATGAAATTTAAGAAAAGTTTA
Found at i:70064907 original size:75 final size:74
Alignment explanation
Indices: 70064737--70065021 Score: 250
Period size: 80 Copynumber: 3.7 Consensus size: 74
70064727 GACCCGAAGT
* * *
70064737 TCAACTCACCTCTCG-AATTATGAGTTGATCTTTTGAAAAAGCAAAAAATTGAAAATACCTCGGC
1 TCAACTCACCTCTCGCAA-TATGAGTTGATTTTTTGAAAAA-C-AGAAATTGAAAATACCTC--A
* * *
70064801 GTGTGACTTGAGGC
61 ATGTGTCTCGAGGC
* *
70064815 TTAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGACAGAAATTGAAAATACCTCAATGT
1 TCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTGAAAAACAGAAATTGAAAATACCTCAATGT
70064880 GTCTCGAGGC
65 GTCTCGAGGC
** * * *
70064890 TCAACTCATTTCTCGCAATATGAGTTGACTTTTTTAAAAAAAAAAACAGGAATTGAAATTACCTC
1 TCAACTCACCTCTCGCAATATGAGTTGA-TTTTTT-----GAAAAACAGAAATTGAAAATACCTC
* * * *
70064955 AACGTGTCCCAAGGT
60 AATGTGTCTCGAGGC
* * * * *
70064970 TCAACTAAGCTCTCGTAATATGAATTGA-TTTTTGAAAAACATAAATTGAAAA
1 TCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAAACAGAAATTGAAAA
70065022 ACGGAAATCG
Statistics
Matches: 171, Mismatches: 29, Indels: 19
0.78 0.13 0.09
Matches are distributed among these distances:
73 15 0.09
75 42 0.25
77 17 0.10
78 30 0.18
79 12 0.07
80 55 0.32
ACGTcount: A:0.36, C:0.18, G:0.16, T:0.31
Consensus pattern (74 bp):
TCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAAACAGAAATTGAAAATACCTCAATGTG
TCTCGAGGC
Found at i:70064974 original size:80 final size:79
Alignment explanation
Indices: 70064855--70065440 Score: 220
Period size: 87 Copynumber: 7.0 Consensus size: 79
70064845 TTTTTGAAAG
* * * * ** *
70064855 ACAGAAATTGAAAATACCTCAATGTGTCTCGAGGCTCAACTCATTTCTCGCAATATGAGTTGACT
1 ACAGAAATTGAAAATACCTCAACGTGTCCCAAGGCTCAACTAAGCTCTCGCAATATGAATTGA-T
*
70064920 TTTTTAAAAAAAAAA
65 TTTTGAAAAAAAAAA
* * * *
70064935 ACAGGAATTGAAATTACCTCAACGTGTCCCAAGGTTCAACTAAGCTCTCGTAATATGAATTGATT
1 ACAGAAATTGAAAATACCTCAACGTGTCCCAAGGCTCAACTAAGCTCTCGCAATATGAATTGATT
70065000 TTTGAAAAACATAAATTGAAAA
66 TTTG---AA-A-AAA---AAAA
* * ** * * * * *
70065022 ACGGAAATCGAAAATACCTCAACGTGTCCTGAGGCTCAATTCACCTCTCGCCAA-ATGAGTCGAT
1 ACAGAAATTGAAAATACCTCAACGTGTCCCAAGGCTCAACTAAGCTCTCG-CAATATGAATTGAT
*
70065086 TTTCGAAAAATATAGATTGGAAAAA
65 TTTTG---AA-A-A-A----AAAAA
* * * * ** *
70065111 ACAGAAATTGAAAATACCTCAATGTGTCTCGAGGCTCAACTCATTTCTCGCAATATGAGTTGA--
1 ACAGAAATTGAAAATACCTCAACGTGTCCCAAGGCTCAACTAAGCTCTCGCAATATGAATTGATT
70065174 TTT-AAAAACAGTCATTAAGA
66 TTTGAAAAA-A---A--AA-A
* ** ** * *
70065194 ACAGAAATTAAAAATACCTCAGTGTGTCCTGAGGCTCAACTCA-CGTCTCACAATATGAATTGAT
1 ACAGAAATTGAAAATACCTCAACGTGTCCCAAGGCTCAACTAAGC-TCTCGCAATATGAATTGAT
70065258 TTTTGCAAAATATAAATTGAAAA
65 TTTTG---AA-A-AAA---AAAA
* * * *** * * * *
70065281 ACATAAATTGAAATTACCTCAGCGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTCGACT
1 ACAGAAATTGAAAATACCTCAACGTGTCCCAAGGCTCAACTAAGCTCTCGCAATATGAATTGA-T
*** *
70065346 TTTT----TTTACAA
65 TTTTGAAAAAAAAAA
* ** * * * * *
70065357 ACAGTAATTGAAAATACCTCGGCGTGCCCCGAGGCTCAACTCA-CTTCTCGCAATATGAGTTGAA
1 ACAGAAATTGAAAATACCTCAACGTGTCCCAAGGCTCAACTAAGC-TCTCGCAATATGAATTGAT
70065421 TTTTGAAAACAGAAAAA
65 TTTTGAAAA-A-AAAAA
70065438 ACA
1 ACA
70065441 TCAAAATACT
Statistics
Matches: 395, Mismatches: 72, Indels: 77
0.73 0.13 0.14
Matches are distributed among these distances:
75 5 0.01
76 56 0.14
77 1 0.00
79 5 0.01
80 54 0.14
81 7 0.02
82 5 0.01
83 59 0.15
84 3 0.01
85 3 0.01
87 120 0.30
88 14 0.04
89 56 0.14
90 4 0.01
91 2 0.01
92 1 0.00
ACGTcount: A:0.37, C:0.19, G:0.16, T:0.28
Consensus pattern (79 bp):
ACAGAAATTGAAAATACCTCAACGTGTCCCAAGGCTCAACTAAGCTCTCGCAATATGAATTGATT
TTTGAAAAAAAAAA
Found at i:70065023 original size:87 final size:86
Alignment explanation
Indices: 70064931--70065338 Score: 396
Period size: 87 Copynumber: 4.7 Consensus size: 86
70064921 TTTTAAAAAA
* * * * * *
70064931 AAAAACAGGAATTGAAATTACCTCAACGTGTCCCAAGGTTCAACTAAGCTCTCGTAATATGAATT
1 AAAAACAGAAATTGAAAATACCTCAACGTGTCCCGAGGCTCAACTCA-CTCTCGCAATATGAATT
70064996 GATTTTTGAAAAACATAAATTG
65 GATTTTTGAAAAACATAAATTG
* * * * *
70065018 AAAAACGGAAATCGAAAATACCTCAACGTGTCCTGAGGCTCAATTCACCTCTCGCCAA-ATGAGT
1 AAAAACAGAAATTGAAAATACCTCAACGTGTCCCGAGGCTCAACTCA-CTCTCG-CAATATGAAT
* * * *
70065082 CGATTTTCGAAAAATATAGATTGG
64 TGATTTTTGAAAAACATAAATT-G
* * * *
70065106 AAAAAACAGAAATTGAAAATACCTCAATGTGTCTCGAGGCTCAACTCATTTCTCGCAATATGAGT
1 -AAAAACAGAAATTGAAAATACCTCAACGTGTCCCGAGGCTCAACTCA-CTCTCGCAATATGAAT
*
70065171 TGA--TTT-AAAAACAGT-CATT-
64 TGATTTTTGAAAAACA-TAAATTG
* * ** * *
70065190 AAGAACAGAAATTAAAAATACCTCAGTGTGTCCTGAGGCTCAACTCACGTCTCACAATATGAATT
1 AAAAACAGAAATTGAAAATACCTCAACGTGTCCCGAGGCTCAACTCAC-TCTCGCAATATGAATT
* *
70065255 GATTTTTGCAAAATATAAATTG
65 GATTTTTGAAAAACATAAATTG
* * * **
70065277 AAAAACATAAATTGAAATTACCTCAGCGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
1 AAAAACAGAAATTGAAAATACCTCAACGTGTCCCGAGGCTCAACTCA-CTCTCGCAATATGA
70065339 GTCGACTTTT
Statistics
Matches: 263, Mismatches: 46, Indels: 24
0.79 0.14 0.07
Matches are distributed among these distances:
83 58 0.22
85 4 0.02
86 17 0.06
87 123 0.47
88 7 0.03
89 54 0.21
ACGTcount: A:0.38, C:0.19, G:0.15, T:0.27
Consensus pattern (86 bp):
AAAAACAGAAATTGAAAATACCTCAACGTGTCCCGAGGCTCAACTCACTCTCGCAATATGAATTG
ATTTTTGAAAAACATAAATTG
Found at i:70065286 original size:14 final size:14
Alignment explanation
Indices: 70065264--70065293 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
70065254 TGATTTTTGC
*
70065264 AAAATATAAATTGA
1 AAAACATAAATTGA
70065278 AAAACATAAATTGA
1 AAAACATAAATTGA
70065292 AA
1 AA
70065294 TTACCTCAGC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.67, C:0.03, G:0.07, T:0.23
Consensus pattern (14 bp):
AAAACATAAATTGA
Found at i:70065327 original size:259 final size:254
Alignment explanation
Indices: 70064855--70065348 Score: 672
Period size: 259 Copynumber: 1.9 Consensus size: 254
70064845 TTTTTGAAAG
70064855 ACAGAAATTGAAAATACCTCAATGTGTCTCGAGGCTCAACTCATTTCTCGCAATATGAGTTGACT
1 ACAGAAATTGAAAATACCTCAATGTGTCTCGAGGCTCAACTCATTTCTCGCAATATGAGTTGA--
* * * * *
70064920 TTTTTAAAAAAAAAAACAGGAATTGAAATTACCTCAACGTGTCCCAAGGTTCAACTAAGCTCTCG
64 -TTTTAAAAAAAAAAACAGAAATTAAAAATACCTCAACGTGTCCCAAGGCTCAACTAAGCTCTCA
* *
70064985 TAATATGAATTGATTTTTGAAAAACATAAATTGAAAAACGGAAATCGAAAATACCTCAACGTGTC
128 CAATATGAATTGATTTTTGAAAAACATAAATTGAAAAACAGAAATCGAAAATACCTCAACGTGTC
*
70065050 CTGAGGCTCAATTCACCTCTCGCCAA-ATGAGTCGA-TTTTCGAAAAATATAGATTGGAAAAA
193 CTGAGGCTCAACTCACCTCTCG-CAATATGAGTCGACTTTTCGAAAAATATAGATTGGAAAAA
70065111 ACAGAAATTGAAAATACCTCAATGTGTCTCGAGGCTCAACTCATTTCTCGCAATATGAGTTGA-T
1 ACAGAAATTGAAAATACCTCAATGTGTCTCGAGGCTCAACTCATTTCTCGCAATATGAGTTGATT
** ** *
70065175 TTAAAAACAGTCATTAAGAACAGAAATTAAAAATACCTCAGTGTGTCCTGAGGCTCAACTCA-CG
66 TTAAAAA-A---A--AA-AACAGAAATTAAAAATACCTCAACGTGTCCCAAGGCTCAACTAAGC-
* * * * * *
70065239 TCTCACAATATGAATTGATTTTTGCAAAATATAAATTGAAAAACATAAATTGAAATTACCTCAGC
123 TCTCACAATATGAATTGATTTTTGAAAAACATAAATTGAAAAACAGAAATCGAAAATACCTCAAC
*
70065304 GTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTCGACTTTT
188 GTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTCGACTTTT
70065349 TTTTACAAAC
Statistics
Matches: 208, Mismatches: 20, Indels: 16
0.85 0.08 0.07
Matches are distributed among these distances:
252 8 0.04
253 1 0.00
256 64 0.31
258 6 0.03
259 125 0.60
260 4 0.02
ACGTcount: A:0.37, C:0.19, G:0.15, T:0.28
Consensus pattern (254 bp):
ACAGAAATTGAAAATACCTCAATGTGTCTCGAGGCTCAACTCATTTCTCGCAATATGAGTTGATT
TTAAAAAAAAAAACAGAAATTAAAAATACCTCAACGTGTCCCAAGGCTCAACTAAGCTCTCACAA
TATGAATTGATTTTTGAAAAACATAAATTGAAAAACAGAAATCGAAAATACCTCAACGTGTCCTG
AGGCTCAACTCACCTCTCGCAATATGAGTCGACTTTTCGAAAAATATAGATTGGAAAAA
Found at i:70074769 original size:17 final size:17
Alignment explanation
Indices: 70074747--70074807 Score: 60
Period size: 17 Copynumber: 3.8 Consensus size: 17
70074737 ACAATAATAT
70074747 AAAATA-ATGATATGTAC
1 AAAATATAT-ATATGTAC
70074764 AAAATATATATATGTAC
1 AAAATATATATATGTAC
*
70074781 ATAATATAGT-TA--TA-
1 AAAATATA-TATATGTAC
70074795 AAAATATATATAT
1 AAAATATATATAT
70074808 TAAATTCGGA
Statistics
Matches: 38, Mismatches: 2, Indels: 10
0.76 0.04 0.20
Matches are distributed among these distances:
13 1 0.03
14 9 0.24
15 2 0.05
17 23 0.61
18 3 0.08
ACGTcount: A:0.54, C:0.03, G:0.07, T:0.36
Consensus pattern (17 bp):
AAAATATATATATGTAC
Found at i:70075293 original size:26 final size:26
Alignment explanation
Indices: 70075264--70075425 Score: 297
Period size: 26 Copynumber: 6.2 Consensus size: 26
70075254 TGGTACAAAT
* *
70075264 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTTCA
*
70075290 TGATAAAGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
70075316 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
70075342 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
70075368 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
70075394 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
70075420 TGATAA
1 TGATAA
70075426 GAATTTCATG
Statistics
Matches: 132, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 132 1.00
ACGTcount: A:0.33, C:0.04, G:0.26, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTTCA
Found at i:70076655 original size:26 final size:26
Alignment explanation
Indices: 70076626--70076678 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
70076616 TTTACAGTTT
70076626 TACCCCTAGTAGATAAATT-ACCGAAA
1 TACCCCTAG-AGATAAATTGACCGAAA
* *
70076652 TACCCCTAGGGATAAATTGACCTAAA
1 TACCCCTAGAGATAAATTGACCGAAA
70076678 T
1 T
70076679 GCATGTTTGA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 8 0.33
26 16 0.67
ACGTcount: A:0.40, C:0.23, G:0.13, T:0.25
Consensus pattern (26 bp):
TACCCCTAGAGATAAATTGACCGAAA
Found at i:70078501 original size:11 final size:11
Alignment explanation
Indices: 70078476--70078518 Score: 70
Period size: 11 Copynumber: 4.0 Consensus size: 11
70078466 CACATATTTC
*
70078476 ATGTGTATA-T
1 ATGTATATATT
70078486 ATGTATATATT
1 ATGTATATATT
70078497 ATGTATATATT
1 ATGTATATATT
70078508 ATGTATATATT
1 ATGTATATATT
70078519 TTAACATTAT
Statistics
Matches: 31, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
10 8 0.26
11 23 0.74
ACGTcount: A:0.35, C:0.00, G:0.12, T:0.53
Consensus pattern (11 bp):
ATGTATATATT
Found at i:70093023 original size:26 final size:26
Alignment explanation
Indices: 70092992--70093073 Score: 146
Period size: 26 Copynumber: 3.2 Consensus size: 26
70092982 TGAAATGCCC
70092992 ATCATGGAACATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAATCCATT
*
70093018 ATCATGGAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAATCCATT
*
70093044 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAATCCATT
70093070 ATCA
1 ATCA
70093074 ATTTGTACCA
Statistics
Matches: 53, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 53 1.00
ACGTcount: A:0.35, C:0.23, G:0.07, T:0.34
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAATCCATT
Found at i:70096161 original size:65 final size:64
Alignment explanation
Indices: 70096033--70096170 Score: 152
Period size: 65 Copynumber: 2.1 Consensus size: 64
70096023 ATACCTATTA
* * * * * * *
70096033 TATTTGTTTATTTATTTTTCATTTACCTTTTAATTATTTAAATTTAATGTTATGTATATTTGTTT
1 TATTTATTCATTTATTATTCATTTACCTTTTAAATATTTAAAATTAATATTA-GTATACTTGTTT
* *
70096098 TATTTATTCATTTATTATTCTTTTACCTTTTTAAAATATTTAAAATTAATATTA-TCTACTTGTT
1 TATTTATTCATTTATTATTCATTTACC-TTTT-AAATATTTAAAATTAATATTAGTATACTTGTT
70096162 T
64 T
*
70096163 TATCTATT
1 TATTTATT
70096171 TTTTATTTAC
Statistics
Matches: 61, Mismatches: 10, Indels: 4
0.81 0.13 0.05
Matches are distributed among these distances:
65 39 0.64
66 4 0.07
67 18 0.30
ACGTcount: A:0.28, C:0.07, G:0.04, T:0.62
Consensus pattern (64 bp):
TATTTATTCATTTATTATTCATTTACCTTTTAAATATTTAAAATTAATATTAGTATACTTGTTT
Found at i:70097545 original size:17 final size:17
Alignment explanation
Indices: 70097523--70097555 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
70097513 TTGAAAATAC
70097523 TAAAAA-AATAATTTAGA
1 TAAAAATAA-AATTTAGA
70097540 TAAAAATAAAATTTAG
1 TAAAAATAAAATTTAG
70097556 GAAAATATTT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
17 13 0.87
18 2 0.13
ACGTcount: A:0.64, C:0.00, G:0.06, T:0.30
Consensus pattern (17 bp):
TAAAAATAAAATTTAGA
Found at i:70103548 original size:3 final size:3
Alignment explanation
Indices: 70103533--70103572 Score: 71
Period size: 3 Copynumber: 13.3 Consensus size: 3
70103523 TCTATGAACA
*
70103533 AAG AAG AAA AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG A
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG A
70103573 TGGTGGTGGC
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
3 35 1.00
ACGTcount: A:0.70, C:0.00, G:0.30, T:0.00
Consensus pattern (3 bp):
AAG
Found at i:70105758 original size:22 final size:22
Alignment explanation
Indices: 70105707--70105755 Score: 73
Period size: 22 Copynumber: 2.3 Consensus size: 22
70105697 CCTAAAAATG
*
70105707 ATAAAATTTTGATTTAATCCTT
1 ATAAAATTTTAATTTAATCCTT
*
70105729 ATAAAATTTTAATTTAATTCTT
1 ATAAAATTTTAATTTAATCCTT
70105751 -TAAAA
1 ATAAAA
70105756 ATTACATTTT
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
21 5 0.20
22 20 0.80
ACGTcount: A:0.43, C:0.06, G:0.02, T:0.49
Consensus pattern (22 bp):
ATAAAATTTTAATTTAATCCTT
Found at i:70105764 original size:21 final size:22
Alignment explanation
Indices: 70105707--70105764 Score: 57
Period size: 22 Copynumber: 2.7 Consensus size: 22
70105697 CCTAAAAATG
* *
70105707 ATAAAATTTTGATTTAATCCTT
1 ATAAAATATTAATTTAATCCTT
* *
70105729 ATAAAATTTTAATTTAATTCTT
1 ATAAAATATTAATTTAATCCTT
70105751 -TAAAA-ATTACATTT
1 ATAAAATATTA-ATTT
70105765 TTACTATCGT
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
20 3 0.09
21 9 0.28
22 20 0.62
ACGTcount: A:0.41, C:0.07, G:0.02, T:0.50
Consensus pattern (22 bp):
ATAAAATATTAATTTAATCCTT
Found at i:70108217 original size:30 final size:31
Alignment explanation
Indices: 70108182--70108243 Score: 83
Period size: 30 Copynumber: 2.0 Consensus size: 31
70108172 TTAGGTGTTG
*
70108182 TTTTGGTTTATTTATCTT-ATATATATT-TAT
1 TTTTGGTATATTTATCTTAATA-ATATTGTAT
*
70108212 TTTTGGTATATTTTTCTTAATAATATTGTAT
1 TTTTGGTATATTTATCTTAATAATATTGTAT
70108243 T
1 T
70108244 ATTCTTTTAA
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
30 21 0.75
31 7 0.25
ACGTcount: A:0.24, C:0.03, G:0.08, T:0.65
Consensus pattern (31 bp):
TTTTGGTATATTTATCTTAATAATATTGTAT
Found at i:70110331 original size:45 final size:46
Alignment explanation
Indices: 70110264--70110387 Score: 200
Period size: 46 Copynumber: 2.8 Consensus size: 46
70110254 CATATGACCT
*
70110264 CTTATCAC-TTGTC-CTTGATCAGATAAGTGTAGCT-AGGCTACCA
1 CTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTGAAGCTACCA
*
70110307 CTTATCACTTTGCCACTTGATCAGATAAGTGTAGCTGAAGCTACCA
1 CTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTGAAGCTACCA
*
70110353 CTTATCACTTTATCACTTGATCAGATAAGTGTAGC
1 CTTATCACTTTGTCACTTGATCAGATAAGTGTAGC
70110388 CACTTATCAC
Statistics
Matches: 74, Mismatches: 4, Indels: 3
0.91 0.05 0.04
Matches are distributed among these distances:
43 8 0.11
44 4 0.05
45 21 0.28
46 41 0.55
ACGTcount: A:0.27, C:0.23, G:0.17, T:0.33
Consensus pattern (46 bp):
CTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTGAAGCTACCA
Found at i:70110370 original size:46 final size:45
Alignment explanation
Indices: 70110264--70110498 Score: 207
Period size: 37 Copynumber: 5.8 Consensus size: 45
70110254 CATATGACCT
*
70110264 CTTATCAC-TTGTC-CTTGATCAGATAAGTGTAGCTAGGCTACCA
1 CTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAGCTACCA
*
70110307 CTTATCACTTTGCCACTTGATCAGATAAGTGTAGCTGAAGCTACCA
1 CTTATCACTTTGTCACTTGATCAGATAAGTGTAGCT-AAGCTACCA
*
70110353 CTTATCACTTTATCACTTGATCAGATAA--GT-G-T-AG---CCA
1 CTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAGCTACCA
*
70110390 CTTATCACTTTGTCTCTTGATCAGATAA--GT-G-T-A---ACCA
1 CTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAGCTACCA
**
70110427 CTTATCACTTTGTTTCTTGATCAGATAA--GT-G-T-A---ACCA
1 CTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAGCTACCA
**
70110464 CTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
1 CTTATCACTTTGTCACTTGATCAGATAAGTGTAGC
70110499 CACTTATCAC
Statistics
Matches: 177, Mismatches: 7, Indels: 18
0.88 0.03 0.09
Matches are distributed among these distances:
37 101 0.57
39 2 0.01
40 3 0.02
42 1 0.01
43 9 0.05
44 6 0.03
45 21 0.12
46 34 0.19
ACGTcount: A:0.27, C:0.21, G:0.16, T:0.36
Consensus pattern (45 bp):
CTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAGCTACCA
Found at i:70110391 original size:37 final size:37
Alignment explanation
Indices: 70110349--70110525 Score: 300
Period size: 37 Copynumber: 4.8 Consensus size: 37
70110339 AGCTGAAGCT
* **
70110349 ACCACTTATCACTTTATCACTTGATCAGATAAGTGTA
1 ACCACTTATCACTTTGTTTCTTGATCAGATAAGTGTA
* *
70110386 GCCACTTATCACTTTGTCTCTTGATCAGATAAGTGTA
1 ACCACTTATCACTTTGTTTCTTGATCAGATAAGTGTA
70110423 ACCACTTATCACTTTGTTTCTTGATCAGATAAGTGTA
1 ACCACTTATCACTTTGTTTCTTGATCAGATAAGTGTA
70110460 ACCACTTATCACTTTGTTTCTTGATCAGATAAGTGTA
1 ACCACTTATCACTTTGTTTCTTGATCAGATAAGTGTA
*
70110497 GCCACTTATCACTTTGTTTCTTGATCAGA
1 ACCACTTATCACTTTGTTTCTTGATCAGA
70110526 AGTACTCAAA
Statistics
Matches: 134, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 134 1.00
ACGTcount: A:0.27, C:0.21, G:0.14, T:0.39
Consensus pattern (37 bp):
ACCACTTATCACTTTGTTTCTTGATCAGATAAGTGTA
Found at i:70118029 original size:45 final size:46
Alignment explanation
Indices: 70117962--70118085 Score: 200
Period size: 46 Copynumber: 2.8 Consensus size: 46
70117952 CATATGACCT
*
70117962 CTTATCAC-TTGTC-CTTGATCAGATAAGTGTAGCT-AGGCTACCA
1 CTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTGAAGCTACCA
*
70118005 CTTATCACTTTGCCACTTGATCAGATAAGTGTAGCTGAAGCTACCA
1 CTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTGAAGCTACCA
*
70118051 CTTATCACTTTATCACTTGATCAGATAAGTGTAGC
1 CTTATCACTTTGTCACTTGATCAGATAAGTGTAGC
70118086 CACTTATCAC
Statistics
Matches: 74, Mismatches: 4, Indels: 3
0.91 0.05 0.04
Matches are distributed among these distances:
43 8 0.11
44 4 0.05
45 21 0.28
46 41 0.55
ACGTcount: A:0.27, C:0.23, G:0.17, T:0.33
Consensus pattern (46 bp):
CTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTGAAGCTACCA
Found at i:70118068 original size:46 final size:45
Alignment explanation
Indices: 70117962--70118196 Score: 207
Period size: 37 Copynumber: 5.8 Consensus size: 45
70117952 CATATGACCT
*
70117962 CTTATCAC-TTGTC-CTTGATCAGATAAGTGTAGCTAGGCTACCA
1 CTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAGCTACCA
*
70118005 CTTATCACTTTGCCACTTGATCAGATAAGTGTAGCTGAAGCTACCA
1 CTTATCACTTTGTCACTTGATCAGATAAGTGTAGCT-AAGCTACCA
*
70118051 CTTATCACTTTATCACTTGATCAGATAA--GT-G-T-AG---CCA
1 CTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAGCTACCA
*
70118088 CTTATCACTTTGTCTCTTGATCAGATAA--GT-G-T-A---ACCA
1 CTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAGCTACCA
**
70118125 CTTATCACTTTGTTTCTTGATCAGATAA--GT-G-T-A---ACCA
1 CTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAGCTACCA
**
70118162 CTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
1 CTTATCACTTTGTCACTTGATCAGATAAGTGTAGC
70118197 CACTTATCAC
Statistics
Matches: 177, Mismatches: 7, Indels: 18
0.88 0.03 0.09
Matches are distributed among these distances:
37 101 0.57
39 2 0.01
40 3 0.02
42 1 0.01
43 9 0.05
44 6 0.03
45 21 0.12
46 34 0.19
ACGTcount: A:0.27, C:0.21, G:0.16, T:0.36
Consensus pattern (45 bp):
CTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAGCTACCA
Found at i:70118089 original size:37 final size:37
Alignment explanation
Indices: 70118047--70118223 Score: 300
Period size: 37 Copynumber: 4.8 Consensus size: 37
70118037 AGCTGAAGCT
* **
70118047 ACCACTTATCACTTTATCACTTGATCAGATAAGTGTA
1 ACCACTTATCACTTTGTTTCTTGATCAGATAAGTGTA
* *
70118084 GCCACTTATCACTTTGTCTCTTGATCAGATAAGTGTA
1 ACCACTTATCACTTTGTTTCTTGATCAGATAAGTGTA
70118121 ACCACTTATCACTTTGTTTCTTGATCAGATAAGTGTA
1 ACCACTTATCACTTTGTTTCTTGATCAGATAAGTGTA
70118158 ACCACTTATCACTTTGTTTCTTGATCAGATAAGTGTA
1 ACCACTTATCACTTTGTTTCTTGATCAGATAAGTGTA
*
70118195 GCCACTTATCACTTTGTTTCTTGATCAGA
1 ACCACTTATCACTTTGTTTCTTGATCAGA
70118224 AGTACTCAAA
Statistics
Matches: 134, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 134 1.00
ACGTcount: A:0.27, C:0.21, G:0.14, T:0.39
Consensus pattern (37 bp):
ACCACTTATCACTTTGTTTCTTGATCAGATAAGTGTA
Found at i:70121856 original size:182 final size:183
Alignment explanation
Indices: 70121457--70122223 Score: 1238
Period size: 182 Copynumber: 4.2 Consensus size: 183
70121447 AAGAAAGAAA
70121457 ATAGAGAAATGGGGAGAGCTCCTTGTTGTGACAAAGCAAATGTGAAGAAAGGGCCATGGTCTCCT
1 ATAGAGAAATGGGGAGAGCTCCTTGTTGTGACAAAGCAAATGTGAAGAAAGGGCCATGGTCTCCT
* * *
70121522 GAAGAAGACTCTAAGCTGAAGGATTATATAGAGAAATGGGAAGAGTTCCTTGTTGTGACAAAGCA
66 GAAGAAGACTCTAAGCTGAAGGATCATATAGAGAAATGGGGAGAGTTCCTTGTTGTGACAAAGAA
* *
70121587 AATGTGAAGAGAGGGCGATGGTCTCCTGAAAAAGACTCTAAGCTGAAAGATTAT
131 AATGTGAAGAAAGGGCCATGGTCTCCTG-AAAAGACTCTAAGCTGAAAGATTAT
*
70121641 ATAGAGAAATGGGGAGAGCTCCTTGTTGTGACAAAGCAAATGTGAAAAAAGGGCCATGGTCTCAC
1 ATAGAGAAATGGGGAGAGCTCCTTGTTGTGACAAAGCAAATGTGAAGAAAGGGCCATGGTCTC-C
* * * *
70121706 -GAAGAAGACTCTAAGCTGAAGGATGATAGAGAGAAATGGGGAGATTTCCTTGTTGTGACGAAGA
65 TGAAGAAGACTCTAAGCTGAAGGATCATATAGAGAAATGGGGAGAGTTCCTTGTTGTGACAAAGA
70121770 AAATGTGAAGAAAGGGCCATGGTCTCCT-AAAAGACTCTAAGCTGAAAGATTAT
130 AAATGTGAAGAAAGGGCCATGGTCTCCTGAAAAGACTCTAAGCTGAAAGATTAT
70121823 ATAGAGAAATGGGGAGAGCTCCTTGTTGTGACAAAGCAAATGTGAAGAAAGGGCCATGGTCTCCT
1 ATAGAGAAATGGGGAGAGCTCCTTGTTGTGACAAAGCAAATGTGAAGAAAGGGCCATGGTCTCCT
* * *
70121888 GAAGAAGACGCTAAGCTGAAGGATCATATAGAGAAATGGGGAGAGCTCCTTGTTGTGACAAAGCA
66 GAAGAAGACTCTAAGCTGAAGGATCATATAGAGAAATGGGGAGAGTTCCTTGTTGTGACAAAGAA
** * *
70121953 AATGCCAAGAAAGGGCCATGGTCTCCTGAAGAAGA--CTAAGCTGAAGGATCAT
131 AATGTGAAGAAAGGGCCATGGTCTCCTGAA-AAGACTCTAAGCTGAAAGATTAT
* **
70122005 ATAGAGAAATGGGGAGAGTTCCTTGTTGTGACAAAGCAAATGCCAAGAAAGGGCCATGGTCTCCT
1 ATAGAGAAATGGGGAGAGCTCCTTGTTGTGACAAAGCAAATGTGAAGAAAGGGCCATGGTCTCCT
70122070 GAAGAAGACTCTAAGCTGAAGGATCATATAGAGAAATGGGGAGAGTTCCTTGTTGTGACAAA-AC
66 GAAGAAGACTCTAAGCTGAAGGATCATATAGAGAAATGGGGAGAGTTCCTTGTTGTGACAAAGA-
*
70122134 AAATGTGAAGAAAGGGCCATGGTCTCCTGAAAAAGACTCTAAGCTGAAGGATTAT
130 AAATGTGAAGAAAGGGCCATGGTCTCCTG-AAAAGACTCTAAGCTGAAAGATTAT
* * *
70122189 ACAGAGAAATGGGAAGAGTTCCTTGTTGTGACAAA
1 ATAGAGAAATGGGGAGAGCTCCTTGTTGTGACAAA
70122224 AAAATGACTC
Statistics
Matches: 543, Mismatches: 32, Indels: 16
0.92 0.05 0.03
Matches are distributed among these distances:
181 1 0.00
182 338 0.62
183 4 0.01
184 199 0.37
185 1 0.00
ACGTcount: A:0.36, C:0.14, G:0.29, T:0.21
Consensus pattern (183 bp):
ATAGAGAAATGGGGAGAGCTCCTTGTTGTGACAAAGCAAATGTGAAGAAAGGGCCATGGTCTCCT
GAAGAAGACTCTAAGCTGAAGGATCATATAGAGAAATGGGGAGAGTTCCTTGTTGTGACAAAGAA
AATGTGAAGAAAGGGCCATGGTCTCCTGAAAAGACTCTAAGCTGAAAGATTAT
Found at i:70121946 original size:274 final size:274
Alignment explanation
Indices: 70121459--70122223 Score: 1257
Period size: 274 Copynumber: 2.8 Consensus size: 274
70121449 GAAAGAAAAT
*
70121459 AGAGAAATGGGGAGAGCTCCTTGTTGTGACAAAGCAAATGTGAAGAAAGGGCCATGGTCTCCTGA
1 AGAGAAATGGGGAGAGTTCCTTGTTGTGACAAAGCAAATGTGAAGAAAGGGCCATGGTCTCCTGA
*
70121524 AGAAGACTCTAAGCTGAAGGATTATATAGAGAAATGGGAAGAGTTCCTTGTTGTGACAAAGCAAA
66 AGAAGACTCTAAGCTGAAGGATTATATAGAGAAATGGGGAGAGTTCCTTGTTGTGACAAAGCAAA
* * *
70121589 TGTGAAGAGAGGGCGATGGTCTCCTGAAAAAGACTCTAAGCTGAAAGATTATATAGAGAAATGGG
131 TGTGAAGAAAGGGCCATGGTCTCCTGAAAAAGACTCTAAGCTGAAGGATTATATAGAGAAATGGG
**
70121654 GAGAGCTCCTTGTTGTGACAAAGCAAATGTGAAAAAAGGGCCATGGTCTCAC-GAAGAAGACTCT
196 GAGAGCTCCTTGTTGTGACAAAGCAAATGCCAAAAAAGGGCCATGGTCTC-CTGAAGAAGA--CT
*
70121718 AAGCTGAAGGATGATAG
258 AAGCTGAAGGATCATAG
* * *
70121735 AGAGAAATGGGGAGATTTCCTTGTTGTGACGAAGAAAATGTGAAGAAAGGGCCATGGTCTCCT-A
1 AGAGAAATGGGGAGAGTTCCTTGTTGTGACAAAGCAAATGTGAAGAAAGGGCCATGGTCTCCTGA
* *
70121799 A-AAGACTCTAAGCTGAAAGATTATATAGAGAAATGGGGAGAGCTCCTTGTTGTGACAAAGCAAA
66 AGAAGACTCTAAGCTGAAGGATTATATAGAGAAATGGGGAGAGTTCCTTGTTGTGACAAAGCAAA
* * *
70121863 TGTGAAGAAAGGGCCATGGTCTCCTGAAGAAGACGCTAAGCTGAAGGATCATATAGAGAAATGGG
131 TGTGAAGAAAGGGCCATGGTCTCCTGAAAAAGACTCTAAGCTGAAGGATTATATAGAGAAATGGG
*
70121928 GAGAGCTCCTTGTTGTGACAAAGCAAATGCCAAGAAAGGGCCATGGTCTCCTGAAGAAGACTAAG
196 GAGAGCTCCTTGTTGTGACAAAGCAAATGCCAAAAAAGGGCCATGGTCTCCTGAAGAAGACTAAG
*
70121993 CTGAAGGATCATAT
261 CTGAAGGATCATAG
**
70122007 AGAGAAATGGGGAGAGTTCCTTGTTGTGACAAAGCAAATGCCAAGAAAGGGCCATGGTCTCCTGA
1 AGAGAAATGGGGAGAGTTCCTTGTTGTGACAAAGCAAATGTGAAGAAAGGGCCATGGTCTCCTGA
* *
70122072 AGAAGACTCTAAGCTGAAGGATCATATAGAGAAATGGGGAGAGTTCCTTGTTGTGACAAAACAAA
66 AGAAGACTCTAAGCTGAAGGATTATATAGAGAAATGGGGAGAGTTCCTTGTTGTGACAAAGCAAA
*
70122137 TGTGAAGAAAGGGCCATGGTCTCCTGAAAAAGACTCTAAGCTGAAGGATTATACAGAGAAATGGG
131 TGTGAAGAAAGGGCCATGGTCTCCTGAAAAAGACTCTAAGCTGAAGGATTATATAGAGAAATGGG
* *
70122202 AAGAGTTCCTTGTTGTGACAAA
196 GAGAGCTCCTTGTTGTGACAAA
70122224 AAAATGACTC
Statistics
Matches: 453, Mismatches: 33, Indels: 8
0.92 0.07 0.02
Matches are distributed among these distances:
272 75 0.17
273 3 0.01
274 314 0.69
275 2 0.00
276 59 0.13
ACGTcount: A:0.36, C:0.14, G:0.29, T:0.21
Consensus pattern (274 bp):
AGAGAAATGGGGAGAGTTCCTTGTTGTGACAAAGCAAATGTGAAGAAAGGGCCATGGTCTCCTGA
AGAAGACTCTAAGCTGAAGGATTATATAGAGAAATGGGGAGAGTTCCTTGTTGTGACAAAGCAAA
TGTGAAGAAAGGGCCATGGTCTCCTGAAAAAGACTCTAAGCTGAAGGATTATATAGAGAAATGGG
GAGAGCTCCTTGTTGTGACAAAGCAAATGCCAAAAAAGGGCCATGGTCTCCTGAAGAAGACTAAG
CTGAAGGATCATAG
Found at i:70122224 original size:92 final size:92
Alignment explanation
Indices: 70121457--70122223 Score: 1238
Period size: 92 Copynumber: 8.4 Consensus size: 92
70121447 AAGAAAGAAA
*
70121457 ATAGAGAAATGGGGAGAGCTCCTTGTTGTGACAAAGCAAATGTGAAGAAAGGGCCATGGTCTCCT
1 ATAGAGAAATGGGGAGAGTTCCTTGTTGTGACAAAGCAAATGTGAAGAAAGGGCCATGGTCTCCT
70121522 GAAGAAGACTCTAAGCTGAAGGATTAT
66 GAAGAAGACTCTAAGCTGAAGGATTAT
* * *
70121549 ATAGAGAAATGGGAAGAGTTCCTTGTTGTGACAAAGCAAATGTGAAGAGAGGGCGATGGTCTCCT
1 ATAGAGAAATGGGGAGAGTTCCTTGTTGTGACAAAGCAAATGTGAAGAAAGGGCCATGGTCTCCT
* *
70121614 GAAAAAGACTCTAAGCTGAAAGATTAT
66 GAAGAAGACTCTAAGCTGAAGGATTAT
* *
70121641 ATAGAGAAATGGGGAGAGCTCCTTGTTGTGACAAAGCAAATGTGAAAAAAGGGCCATGGTCTCAC
1 ATAGAGAAATGGGGAGAGTTCCTTGTTGTGACAAAGCAAATGTGAAGAAAGGGCCATGGTCTC-C
*
70121706 -GAAGAAGACTCTAAGCTGAAGGATGAT
65 TGAAGAAGACTCTAAGCTGAAGGATTAT
* * * *
70121733 AGAGAGAAATGGGGAGATTTCCTTGTTGTGACGAAGAAAATGTGAAGAAAGGGCCATGGTCTCCT
1 ATAGAGAAATGGGGAGAGTTCCTTGTTGTGACAAAGCAAATGTGAAGAAAGGGCCATGGTCTCCT
*
70121798 -AA-AAGACTCTAAGCTGAAAGATTAT
66 GAAGAAGACTCTAAGCTGAAGGATTAT
*
70121823 ATAGAGAAATGGGGAGAGCTCCTTGTTGTGACAAAGCAAATGTGAAGAAAGGGCCATGGTCTCCT
1 ATAGAGAAATGGGGAGAGTTCCTTGTTGTGACAAAGCAAATGTGAAGAAAGGGCCATGGTCTCCT
* *
70121888 GAAGAAGACGCTAAGCTGAAGGATCAT
66 GAAGAAGACTCTAAGCTGAAGGATTAT
* **
70121915 ATAGAGAAATGGGGAGAGCTCCTTGTTGTGACAAAGCAAATGCCAAGAAAGGGCCATGGTCTCCT
1 ATAGAGAAATGGGGAGAGTTCCTTGTTGTGACAAAGCAAATGTGAAGAAAGGGCCATGGTCTCCT
*
70121980 GAAGAAGA--CTAAGCTGAAGGATCAT
66 GAAGAAGACTCTAAGCTGAAGGATTAT
**
70122005 ATAGAGAAATGGGGAGAGTTCCTTGTTGTGACAAAGCAAATGCCAAGAAAGGGCCATGGTCTCCT
1 ATAGAGAAATGGGGAGAGTTCCTTGTTGTGACAAAGCAAATGTGAAGAAAGGGCCATGGTCTCCT
*
70122070 GAAGAAGACTCTAAGCTGAAGGATCAT
66 GAAGAAGACTCTAAGCTGAAGGATTAT
*
70122097 ATAGAGAAATGGGGAGAGTTCCTTGTTGTGACAAAACAAATGTGAAGAAAGGGCCATGGTCTCCT
1 ATAGAGAAATGGGGAGAGTTCCTTGTTGTGACAAAGCAAATGTGAAGAAAGGGCCATGGTCTCCT
*
70122162 GAAAAAGACTCTAAGCTGAAGGATTAT
66 GAAGAAGACTCTAAGCTGAAGGATTAT
* *
70122189 ACAGAGAAATGGGAAGAGTTCCTTGTTGTGACAAA
1 ATAGAGAAATGGGGAGAGTTCCTTGTTGTGACAAA
70122224 AAAATGACTC
Statistics
Matches: 629, Mismatches: 40, Indels: 12
0.92 0.06 0.02
Matches are distributed among these distances:
90 170 0.27
91 5 0.01
92 453 0.72
93 1 0.00
ACGTcount: A:0.36, C:0.14, G:0.29, T:0.21
Consensus pattern (92 bp):
ATAGAGAAATGGGGAGAGTTCCTTGTTGTGACAAAGCAAATGTGAAGAAAGGGCCATGGTCTCCT
GAAGAAGACTCTAAGCTGAAGGATTAT
Found at i:70122233 original size:61 final size:60
Alignment explanation
Indices: 70122163--70122284 Score: 199
Period size: 61 Copynumber: 2.0 Consensus size: 60
70122153 TGGTCTCCTG
*
70122163 AAAAAGACTCTAAGCTGAAGGATTATACAGAGAAATGGGAAGAGTTCCTTGTTGTGACAA
1 AAAAAGACTCTAAGCTGAAGGATTATACAGAGAAATGGGAAGAGCTCCTTGTTGTGACAA
* * *
70122223 AAAAATGACTCTAAGCTGAAGGATTATATAGAGAAATGGGGAGAGCTGCTTGTTGTGACAA
1 AAAAA-GACTCTAAGCTGAAGGATTATACAGAGAAATGGGAAGAGCTCCTTGTTGTGACAA
70122284 A
1 A
70122285 GCAAATGTCA
Statistics
Matches: 57, Mismatches: 4, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
60 5 0.09
61 52 0.91
ACGTcount: A:0.39, C:0.11, G:0.26, T:0.24
Consensus pattern (60 bp):
AAAAAGACTCTAAGCTGAAGGATTATACAGAGAAATGGGAAGAGCTCCTTGTTGTGACAA
Found at i:70122756 original size:33 final size:33
Alignment explanation
Indices: 70122719--70122797 Score: 122
Period size: 33 Copynumber: 2.4 Consensus size: 33
70122709 AGAGGGAACA
*
70122719 CAAAAGTATTTTGAGAGATTTGGGGATTCTCCC
1 CAAAAGTATTTTGAGAGATTTGGCGATTCTCCC
* *
70122752 CAAAAGTATTTTGAGAGTTTTGGCGATTTTCCC
1 CAAAAGTATTTTGAGAGATTTGGCGATTCTCCC
*
70122785 CTAAAGTATTTTG
1 CAAAAGTATTTTG
70122798 GAGTAGGACC
Statistics
Matches: 42, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
33 42 1.00
ACGTcount: A:0.27, C:0.14, G:0.22, T:0.38
Consensus pattern (33 bp):
CAAAAGTATTTTGAGAGATTTGGCGATTCTCCC
Found at i:70122988 original size:13 final size:13
Alignment explanation
Indices: 70122970--70122994 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
70122960 ATTATTATGC
70122970 TATTAAATTTTAT
1 TATTAAATTTTAT
70122983 TATTAAATTTTA
1 TATTAAATTTTA
70122995 AATTATAATA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (13 bp):
TATTAAATTTTAT
Found at i:70124468 original size:12 final size:12
Alignment explanation
Indices: 70124451--70124487 Score: 56
Period size: 14 Copynumber: 2.9 Consensus size: 12
70124441 AGAGGTTTAA
70124451 ATAATAGTATAT
1 ATAATAGTATAT
70124463 ATAATATGATATAT
1 ATAATA-G-TATAT
70124477 ATAATAGTATA
1 ATAATAGTATA
70124488 GACTGGCGAT
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
12 10 0.43
13 2 0.09
14 11 0.48
ACGTcount: A:0.51, C:0.00, G:0.08, T:0.41
Consensus pattern (12 bp):
ATAATAGTATAT
Found at i:70126110 original size:18 final size:18
Alignment explanation
Indices: 70126087--70126126 Score: 64
Period size: 18 Copynumber: 2.2 Consensus size: 18
70126077 TGCATACATA
70126087 TATTATTA-TTTATATTAT
1 TATTATTATTTTATA-TAT
70126105 TATTATTATTTTATATAT
1 TATTATTATTTTATATAT
70126123 TATT
1 TATT
70126127 GCTGTTATTA
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
18 15 0.71
19 6 0.29
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.68
Consensus pattern (18 bp):
TATTATTATTTTATATAT
Found at i:70126661 original size:25 final size:28
Alignment explanation
Indices: 70126610--70126665 Score: 82
Period size: 25 Copynumber: 2.1 Consensus size: 28
70126600 TTTCGAATAC
70126610 TATATTATATTTTTACATATTATATTATG
1 TATATTATATTTTTACA-ATTATATTATG
70126639 TATA-TATATTTTT-C-ATTATATTATG
1 TATATTATATTTTTACAATTATATTATG
70126664 TA
1 TA
70126666 CATACTTTTA
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
25 13 0.48
27 1 0.04
28 9 0.33
29 4 0.15
ACGTcount: A:0.34, C:0.04, G:0.04, T:0.59
Consensus pattern (28 bp):
TATATTATATTTTTACAATTATATTATG
Found at i:70126681 original size:25 final size:23
Alignment explanation
Indices: 70126620--70126720 Score: 71
Period size: 25 Copynumber: 4.1 Consensus size: 23
70126610 TATATTATAT
*
70126620 TTTTACATATTATATTATGTATATA
1 TTTTA-ATA-TATATTATGTACATA
*
70126645 TATTT-TTCATTATATTATGTACATA
1 T-TTTAAT-A-TATATTATGTACATA
* **
70126670 CTTTTAATAT-TATTACGTATTTA
1 -TTTTAATATATATTATGTACATA
70126693 TTTTTAATATATATATATGTACATA
1 -TTTTAATATATAT-TATGTACATA
70126718 TTT
1 TTT
70126721 ATGTAGTATT
Statistics
Matches: 60, Mismatches: 10, Indels: 13
0.72 0.12 0.16
Matches are distributed among these distances:
23 19 0.32
24 8 0.13
25 28 0.47
26 5 0.08
ACGTcount: A:0.34, C:0.06, G:0.04, T:0.56
Consensus pattern (23 bp):
TTTTAATATATATTATGTACATA
Found at i:70126683 original size:23 final size:24
Alignment explanation
Indices: 70126620--70126717 Score: 74
Period size: 23 Copynumber: 4.0 Consensus size: 24
70126610 TATATTATAT
* *
70126620 TTTTACATATTATATTATGTATATATAT
1 TTTTA-ATA-TATATTATG--TACATAC
*
70126648 TTTTCAT-TATATTATGTACATAC
1 TTTTAATATATATTATGTACATAC
* ** *
70126671 TTTTAATAT-TATTACGTATTTAT
1 TTTTAATATATATTATGTACATAC
70126694 TTTTAATATATATATATGTACATA
1 TTTTAATATATAT-TATGTACATA
70126718 TTTATGTAGT
Statistics
Matches: 56, Mismatches: 11, Indels: 9
0.74 0.14 0.12
Matches are distributed among these distances:
23 30 0.54
24 4 0.07
25 16 0.29
27 2 0.04
28 4 0.07
ACGTcount: A:0.35, C:0.06, G:0.04, T:0.55
Consensus pattern (24 bp):
TTTTAATATATATTATGTACATAC
Found at i:70141125 original size:73 final size:74
Alignment explanation
Indices: 70140967--70141117 Score: 223
Period size: 73 Copynumber: 2.1 Consensus size: 74
70140957 GTATTCTGAT
* *
70140967 ATTTATATTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGTCACACTGAG
1 ATTTCTATTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGGCACACTGAG
*
70141032 GTATTTTCA
66 GTATGTTCA
** ** *
70141041 ATTTCTATTTTTC-AAAAATTGACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCTGAG
1 ATTTCTATTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGGCACACTGAG
70141105 GTATGTTCA
66 GTATGTTCA
70141114 ATTT
1 ATTT
70141118 TTGTTTTTTT
Statistics
Matches: 69, Mismatches: 8, Indels: 1
0.88 0.10 0.01
Matches are distributed among these distances:
73 57 0.83
74 12 0.17
ACGTcount: A:0.28, C:0.16, G:0.21, T:0.34
Consensus pattern (74 bp):
ATTTCTATTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGGCACACTGAG
GTATGTTCA
Found at i:70141145 original size:160 final size:159
Alignment explanation
Indices: 70140976--70141362 Score: 659
Period size: 160 Copynumber: 2.4 Consensus size: 159
70140966 TATTTATATT
*
70140976 TTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGTCACACTGAGGTATTTTCA
1 TTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGTCACATTGAGGTATTTTCA
* *
70141041 ATTTCTATTTTTCAAAAATTGACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGG
66 ATTTCTATTTTTCAAAAATCGACTCATATTGCGAGAGGTGAGTTGAGCCTCGAGGCACGCTGAGG
*
70141106 TATGTTCAATTTTTGTTTTTTTTATTTATG
131 TATGTTCAATTTTTG-TTTTTTAATTTATG
* * *
70141136 TTTCAAAAAATCAACTCATATTGCGAGAGGTGAATTGAGCCTCAAGTCACGTTGAGGTATTTTTA
1 TTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGTCACATTGAGGTATTTTCA
*
70141201 ATTTCTATTTTTCAAAAATCGACTCATATTGCGAGAGGTGAGTTGAGCCTCGAGGCACGCTGGGG
66 ATTTCTATTTTTCAAAAATCGACTCATATTGCGAGAGGTGAGTTGAGCCTCGAGGCACGCTGAGG
*
70141266 TATTTTCAATTTTTGTTTTTTAATTTATG
131 TATGTTCAATTTTTGTTTTTTAATTTATG
* *
70141295 TTTC-AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCATCAAGTCACATTGAGGTATTCTCA
1 TTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGTCACATTGAGGTATTTTCA
70141359 ATTT
66 ATTT
70141363 ATCATCAAAA
Statistics
Matches: 213, Mismatches: 14, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
158 59 0.28
159 17 0.08
160 137 0.64
ACGTcount: A:0.28, C:0.15, G:0.21, T:0.37
Consensus pattern (159 bp):
TTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGTCACATTGAGGTATTTTCA
ATTTCTATTTTTCAAAAATCGACTCATATTGCGAGAGGTGAGTTGAGCCTCGAGGCACGCTGAGG
TATGTTCAATTTTTGTTTTTTAATTTATG
Found at i:70141199 original size:72 final size:73
Alignment explanation
Indices: 70141132--70141277 Score: 211
Period size: 73 Copynumber: 2.0 Consensus size: 73
70141122 TTTTTTTATT
* *
70141132 TATGTTTCAAAAAATCAACTCATATTGCGAGAGGTGAATTGAGCCTCAAGTCACGTTGAGGTATT
1 TATGTTTC-AAAAATCAACTCATATTGCGAGAGGTGAATTGAGCCTCAAGGCACGCTGAGGTATT
70141197 TTTAATTTC
65 TTTAATTTC
* * * * *
70141206 TATTTTTCAAAAATCGACTCATATTGCGAGAGGTGAGTTGAGCCTCGAGGCACGCTGGGGTATTT
1 TATGTTTCAAAAATCAACTCATATTGCGAGAGGTGAATTGAGCCTCAAGGCACGCTGAGGTATTT
*
70141271 TCAATTT
66 TTAATTT
70141278 TTGTTTTTTA
Statistics
Matches: 64, Mismatches: 8, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
73 57 0.89
74 7 0.11
ACGTcount: A:0.28, C:0.16, G:0.22, T:0.34
Consensus pattern (73 bp):
TATGTTTCAAAAATCAACTCATATTGCGAGAGGTGAATTGAGCCTCAAGGCACGCTGAGGTATTT
TTAATTTC
Found at i:70141277 original size:73 final size:74
Alignment explanation
Indices: 70141136--70141567 Score: 314
Period size: 85 Copynumber: 5.6 Consensus size: 74
70141126 TTTATTTATG
* * * *
70141136 TTTCAAAAAATCAACTCATATTGCGAGAGGTGAATTGAGCCTCAAGTCACGTTGAGGTATTTTTA
1 TTTC-AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGAGTCACGCTGAGGTATTTTCA
70141201 ATTTCT-ATT
65 ATTTCTAATT
* * *
70141210 TTTCAAAAATCGACTCATATTGCGAGAGGTGAGTTGAGCCTCGAGGCACGCTGGGGTATTTTCAA
1 TTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGAGTCACGCTGAGGTATTTTCAA
*
70141275 TTTTTGTTTTTTAATTTAT
66 -------TTTCTAA--T-T
* * ** *
70141294 GTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCATCAAGTCACATTGAGGTATTCTCA
1 -TTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGAGTCACGCTGAGGTATTTTCA
* * *
70141359 ATTTATCATC
65 ATTTCTAATT
**** * * *
70141369 AAAAAAATCAATCAACTCATATTGCTAGAGGTAAGTTGAGCCTTG-GCTCACACGCTGAGGTATT
1 TTTCAAA--AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGAG-T--CACGCTGAGGTATT
**
70141433 TTCAATTTCT-GCT
61 TTCAATTTCTAATT
** * * *
70141446 TTTCAAAAATCAACTCATATTGCGAGAAATGAGTTGATCCTCG-GCTCTAGTGCTGAGCTATTTT
1 TTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGAG-TC-A-CGCTGAGGTATTTT
**
70141510 CAATTTCTGTTT
63 CAATTTCTAATT
* *
70141522 TTTCAATTTATATTCAGCTCATATTGCGAGAGGTGAGTTGAGCCTC
1 TTTCAA---A-AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC
70141568 AGCTCTTGTG
Statistics
Matches: 280, Mismatches: 54, Indels: 42
0.74 0.14 0.11
Matches are distributed among these distances:
73 55 0.20
74 8 0.03
75 54 0.19
76 40 0.14
77 3 0.01
78 25 0.09
79 1 0.00
80 34 0.12
81 1 0.00
83 1 0.00
84 1 0.00
85 57 0.20
ACGTcount: A:0.28, C:0.17, G:0.19, T:0.36
Consensus pattern (74 bp):
TTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGAGTCACGCTGAGGTATTTTCAA
TTTCTAATT
Found at i:70141573 original size:80 final size:76
Alignment explanation
Indices: 70141378--70141602 Score: 256
Period size: 80 Copynumber: 2.9 Consensus size: 76
70141368 CAAAAAAATC
* * * ** *
70141378 AATCAACTCATATTGCTAGAGGTAAGTTGAGCCTTGGCTC-ACACGCTGAGGTATTTTCAATTTC
1 AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCTCTA-GTGCTGAGCTATTTTCAATTTC
*
70141442 TG-CTTTTCAAA
65 TGTTTTTTCAAA
** *
70141453 AATCAACTCATATTGCGAGAAATGAGTTGATCCTCGGCTCTAGTGCTGAGCTATTTTCAATTTCT
1 AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCTCTAGTGCTGAGCTATTTTCAATTTCT
70141518 GTTTTTTCAATTTA
66 GTTTTTTCAA---A
* * * * *
70141532 TATTCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAGCTCTTGTGCTGAGTTATTTTCAATTTC
1 -AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCTCTAGTGCTGAGCTATTTTCAATTTC
70141597 TGTTTT
65 TGTTTT
70141603 AATGTCTGTT
Statistics
Matches: 126, Mismatches: 18, Indels: 7
0.83 0.12 0.05
Matches are distributed among these distances:
75 55 0.44
76 8 0.06
79 1 0.01
80 62 0.49
ACGTcount: A:0.24, C:0.18, G:0.19, T:0.39
Consensus pattern (76 bp):
AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCTCTAGTGCTGAGCTATTTTCAATTTCT
GTTTTTTCAAA
Found at i:70143523 original size:3 final size:3
Alignment explanation
Indices: 70143515--70143603 Score: 51
Period size: 3 Copynumber: 30.0 Consensus size: 3
70143505 TGCATACATA
** *
70143515 TAT TAT TAT T-T ATAT TAT TAT TAT TAT T-T TAT ATAT TAT TGC TGT
1 TAT TAT TAT TAT -TAT TAT TAT TAT TAT TAT TAT -TAT TAT TAT TAT
* * * * *
70143560 TAT TAA CA- TAC TAT TAT TAT TAT TA- TATT TAT TAA TAA TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TA-T TAT TAT TAT TAT TAT
70143604 CAGTACTAGT
Statistics
Matches: 69, Mismatches: 10, Indels: 14
0.74 0.11 0.15
Matches are distributed among these distances:
2 6 0.09
3 57 0.83
4 6 0.09
ACGTcount: A:0.35, C:0.03, G:0.02, T:0.60
Consensus pattern (3 bp):
TAT
Found at i:70143538 original size:18 final size:18
Alignment explanation
Indices: 70143515--70143554 Score: 64
Period size: 18 Copynumber: 2.2 Consensus size: 18
70143505 TGCATACATA
70143515 TATTATTA-TTTATATTAT
1 TATTATTATTTTATA-TAT
70143533 TATTATTATTTTATATAT
1 TATTATTATTTTATATAT
70143551 TATT
1 TATT
70143555 GCTGTTATTA
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
18 15 0.71
19 6 0.29
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.68
Consensus pattern (18 bp):
TATTATTATTTTATATAT
Found at i:70144073 original size:20 final size:19
Alignment explanation
Indices: 70144009--70144075 Score: 62
Period size: 20 Copynumber: 3.4 Consensus size: 19
70143999 ATACTTTTTA
*
70144009 ATATTGTATTTTTATATATT
1 ATATTATATTTTTA-ATATT
* ** *
70144029 ATGTATATATTTCGAATACT
1 ATAT-TATATTTTTAATATT
70144049 ATATTATATTTTTACATATT
1 ATATTATATTTTTA-ATATT
70144069 ATATTAT
1 ATATTAT
70144076 GTATATATAT
Statistics
Matches: 36, Mismatches: 9, Indels: 4
0.73 0.18 0.08
Matches are distributed among these distances:
19 8 0.22
20 21 0.58
21 7 0.19
ACGTcount: A:0.34, C:0.04, G:0.04, T:0.57
Consensus pattern (19 bp):
ATATTATATTTTTAATATT
Found at i:70144099 original size:25 final size:28
Alignment explanation
Indices: 70144048--70144103 Score: 82
Period size: 25 Copynumber: 2.1 Consensus size: 28
70144038 TTTCGAATAC
70144048 TATATTATATTTTTACATATTATATTATG
1 TATATTATATTTTTACA-ATTATATTATG
70144077 TATA-TATATTTTT-C-ATTATATTATG
1 TATATTATATTTTTACAATTATATTATG
70144102 TA
1 TA
70144104 CATACTTTTT
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
25 13 0.48
27 1 0.04
28 9 0.33
29 4 0.15
ACGTcount: A:0.34, C:0.04, G:0.04, T:0.59
Consensus pattern (28 bp):
TATATTATATTTTTACAATTATATTATG
Found at i:70144122 original size:24 final size:23
Alignment explanation
Indices: 70144082--70144141 Score: 59
Period size: 24 Copynumber: 2.6 Consensus size: 23
70144072 TTATGTATAT
* *
70144082 ATATTTTTCAT-TATATTATGTAC
1 ATATTTTTAATAT-TATTACGTAC
*
70144105 ATACTTTTTAATATTATTACGTAT
1 ATA-TTTTTAATATTATTACGTAC
*
70144129 TTATTTTTAATAT
1 ATATTTTTAATAT
70144142 ATATATATAT
Statistics
Matches: 31, Mismatches: 4, Indels: 4
0.79 0.10 0.10
Matches are distributed among these distances:
23 13 0.42
24 17 0.55
25 1 0.03
ACGTcount: A:0.32, C:0.07, G:0.03, T:0.58
Consensus pattern (23 bp):
ATATTTTTAATATTATTACGTAC
Found at i:70144153 original size:51 final size:50
Alignment explanation
Indices: 70144069--70144188 Score: 126
Period size: 51 Copynumber: 2.4 Consensus size: 50
70144059 TTTACATATT
*
70144069 ATATTATGT-ATATATATTTTT--CAT-TATATTATGTACATACTTT-T-TA
1 ATATTAT-TAATATATATTTTTAATATATATATTATGTACATA-TTTATGTA
* *
70144115 ATATTATTACGTATTTATTTTTAATATATATATATATGTACATATTTATGTA
1 ATATTATTA-ATATATATTTTTAATATATATAT-TATGTACATATTTATGTA
*
70144167 GTATTATTAATATATATTTTTA
1 ATATTATTAATATATATTTTTA
70144189 TGTTATTAGT
Statistics
Matches: 60, Mismatches: 6, Indels: 11
0.78 0.08 0.14
Matches are distributed among these distances:
45 1 0.02
46 7 0.12
47 10 0.17
49 2 0.03
50 8 0.13
51 22 0.37
52 10 0.17
ACGTcount: A:0.35, C:0.04, G:0.05, T:0.56
Consensus pattern (50 bp):
ATATTATTAATATATATTTTTAATATATATATTATGTACATATTTATGTA
Found at i:70145406 original size:18 final size:19
Alignment explanation
Indices: 70145383--70145418 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
70145373 AAATACCTTG
70145383 TCAT-CCTCACTTCTCAAA
1 TCATCCCTCACTTCTCAAA
*
70145401 TCATCCCTCATTTCTCAA
1 TCATCCCTCACTTCTCAA
70145419 CATTCCTCTC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 4 0.25
19 12 0.75
ACGTcount: A:0.25, C:0.39, G:0.00, T:0.36
Consensus pattern (19 bp):
TCATCCCTCACTTCTCAAA
Found at i:70152354 original size:21 final size:21
Alignment explanation
Indices: 70152328--70152368 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
70152318 ATCTGCTCAA
* *
70152328 ACTCCACCTGTTTTGGAGTAC
1 ACTCCACCTGCTGTGGAGTAC
70152349 ACTCCACCTGCTGTGGAGTA
1 ACTCCACCTGCTGTGGAGTA
70152369 TTGCTCGTCT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.20, C:0.29, G:0.22, T:0.29
Consensus pattern (21 bp):
ACTCCACCTGCTGTGGAGTAC
Found at i:70155954 original size:16 final size:16
Alignment explanation
Indices: 70155921--70155954 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
70155911 CCACCCTGTT
* *
70155921 AACATTAATGGGAGAC
1 AACATTAATGGCAAAC
70155937 AACATTAATGGCAAAC
1 AACATTAATGGCAAAC
70155953 AA
1 AA
70155955 TACAAAGTGG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.50, C:0.15, G:0.18, T:0.18
Consensus pattern (16 bp):
AACATTAATGGCAAAC
Found at i:70162252 original size:7 final size:7
Alignment explanation
Indices: 70162237--70162268 Score: 55
Period size: 7 Copynumber: 4.6 Consensus size: 7
70162227 AGAGATGGAG
*
70162237 AGAATAA
1 AGAACAA
70162244 AGAACAA
1 AGAACAA
70162251 AGAACAA
1 AGAACAA
70162258 AGAACAA
1 AGAACAA
70162265 AGAA
1 AGAA
70162269 AATATGAAAG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
7 24 1.00
ACGTcount: A:0.72, C:0.09, G:0.16, T:0.03
Consensus pattern (7 bp):
AGAACAA
Found at i:70162884 original size:8 final size:8
Alignment explanation
Indices: 70162871--70162914 Score: 60
Period size: 8 Copynumber: 6.0 Consensus size: 8
70162861 CTTTATTTAA
70162871 AAAATTTT
1 AAAATTTT
70162879 AAAATTTT
1 AAAATTTT
70162887 AAAATTTT
1 AAAATTTT
70162895 ----TTTT
1 AAAATTTT
70162899 AAAATTTT
1 AAAATTTT
70162907 AAAATTTT
1 AAAATTTT
70162915 TTCATAATTA
Statistics
Matches: 32, Mismatches: 0, Indels: 8
0.80 0.00 0.20
Matches are distributed among these distances:
4 4 0.12
8 28 0.88
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (8 bp):
AAAATTTT
Found at i:70162900 original size:20 final size:20
Alignment explanation
Indices: 70162875--70162916 Score: 84
Period size: 20 Copynumber: 2.1 Consensus size: 20
70162865 ATTTAAAAAA
70162875 TTTTAAAATTTTAAAATTTT
1 TTTTAAAATTTTAAAATTTT
70162895 TTTTAAAATTTTAAAATTTT
1 TTTTAAAATTTTAAAATTTT
70162915 TT
1 TT
70162917 CATAATTAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (20 bp):
TTTTAAAATTTTAAAATTTT
Found at i:70165195 original size:16 final size:17
Alignment explanation
Indices: 70165169--70165202 Score: 61
Period size: 16 Copynumber: 2.1 Consensus size: 17
70165159 TTAGTTTTAT
70165169 TAAATATTTGAAAATAA
1 TAAATATTTGAAAATAA
70165186 TAAA-ATTTGAAAATAA
1 TAAATATTTGAAAATAA
70165202 T
1 T
70165203 TAGACATACA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 13 0.76
17 4 0.24
ACGTcount: A:0.59, C:0.00, G:0.06, T:0.35
Consensus pattern (17 bp):
TAAATATTTGAAAATAA
Found at i:70170978 original size:2 final size:2
Alignment explanation
Indices: 70170971--70170997 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
70170961 GCAATATCTG
70170971 GA GA GA GA GA GA GA GA GA GA GA GA GA G
1 GA GA GA GA GA GA GA GA GA GA GA GA GA G
70170998 GCAGGTTAAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.52, T:0.00
Consensus pattern (2 bp):
GA
Found at i:70178088 original size:13 final size:11
Alignment explanation
Indices: 70178051--70178082 Score: 55
Period size: 11 Copynumber: 2.9 Consensus size: 11
70178041 CCCGCCCGTA
70178051 ATAATTTTTAT
1 ATAATTTTTAT
*
70178062 ATTATTTTTAT
1 ATAATTTTTAT
70178073 ATAATTTTTA
1 ATAATTTTTA
70178083 AATATATATA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
11 19 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (11 bp):
ATAATTTTTAT
Found at i:70178128 original size:21 final size:21
Alignment explanation
Indices: 70178102--70178161 Score: 59
Period size: 25 Copynumber: 2.7 Consensus size: 21
70178092 AATACATCAA
70178102 AAATATTAAAAACATT-AAAAT
1 AAATATTAAAAA-ATTAAAAAT
70178123 AAATATATCACAACAAATTAAAAAT
1 AAATAT-T-A-AA-AAATTAAAAAT
*
70178148 AAATTTTAAAAAAT
1 AAATATTAAAAAAT
70178162 ATTTAGACTT
Statistics
Matches: 33, Mismatches: 1, Indels: 10
0.75 0.02 0.23
Matches are distributed among these distances:
21 10 0.30
22 3 0.09
23 2 0.06
24 6 0.18
25 12 0.36
ACGTcount: A:0.65, C:0.07, G:0.00, T:0.28
Consensus pattern (21 bp):
AAATATTAAAAAATTAAAAAT
Found at i:70178291 original size:22 final size:22
Alignment explanation
Indices: 70178266--70178308 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
70178256 TATTCAAATA
70178266 ATAACAATAAAATAGTAGCAAC
1 ATAACAATAAAATAGTAGCAAC
* * *
70178288 ATAATAGTAAAATGGTAGCAA
1 ATAACAATAAAATAGTAGCAA
70178309 AATAGGAAAA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.56, C:0.09, G:0.14, T:0.21
Consensus pattern (22 bp):
ATAACAATAAAATAGTAGCAAC
Found at i:70179832 original size:40 final size:40
Alignment explanation
Indices: 70179777--70179856 Score: 160
Period size: 40 Copynumber: 2.0 Consensus size: 40
70179767 CCTTTCAATT
70179777 TTTAATATAGTTTTATCTTGACCTCTTTCGCATCTTCGTC
1 TTTAATATAGTTTTATCTTGACCTCTTTCGCATCTTCGTC
70179817 TTTAATATAGTTTTATCTTGACCTCTTTCGCATCTTCGTC
1 TTTAATATAGTTTTATCTTGACCTCTTTCGCATCTTCGTC
70179857 CCTATAAGCT
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 40 1.00
ACGTcount: A:0.17, C:0.23, G:0.10, T:0.50
Consensus pattern (40 bp):
TTTAATATAGTTTTATCTTGACCTCTTTCGCATCTTCGTC
Found at i:70186793 original size:62 final size:62
Alignment explanation
Indices: 70186708--70186837 Score: 251
Period size: 62 Copynumber: 2.1 Consensus size: 62
70186698 AGTGGTAAAA
70186708 AAATTTCAAAATTTTTAGTTAGTTAAGTCTAGGAATCATATTTTACGAGCAGAATTTAAATG
1 AAATTTCAAAATTTTTAGTTAGTTAAGTCTAGGAATCATATTTTACGAGCAGAATTTAAATG
*
70186770 AAATTTCAAAATTTTTAGTTAGTTAAGTTTAGGAATCATATTTTACGAGCAGAATTTAAATG
1 AAATTTCAAAATTTTTAGTTAGTTAAGTCTAGGAATCATATTTTACGAGCAGAATTTAAATG
70186832 AAATTT
1 AAATTT
70186838 TTTTCGAACC
Statistics
Matches: 67, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
62 67 1.00
ACGTcount: A:0.39, C:0.07, G:0.14, T:0.40
Consensus pattern (62 bp):
AAATTTCAAAATTTTTAGTTAGTTAAGTCTAGGAATCATATTTTACGAGCAGAATTTAAATG
Found at i:70187014 original size:32 final size:32
Alignment explanation
Indices: 70186978--70187137 Score: 302
Period size: 32 Copynumber: 5.0 Consensus size: 32
70186968 CACTTGATGA
70186978 TAATTCTTATAACAAAAACATCATTCATCATT
1 TAATTCTTATAACAAAAACATCATTCATCATT
*
70187010 TAATTCTTATAACAAAAACATGATTCATCATT
1 TAATTCTTATAACAAAAACATCATTCATCATT
70187042 TAATTCTTATAACAAAAACATCATTCATCATT
1 TAATTCTTATAACAAAAACATCATTCATCATT
70187074 TAATTCTTATAACAAAAACATCATTCATCATT
1 TAATTCTTATAACAAAAACATCATTCATCATT
*
70187106 TAATTCTTATAACAAAAACATGATTCATCATT
1 TAATTCTTATAACAAAAACATCATTCATCATT
70187138 CTTGAAGCTT
Statistics
Matches: 125, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
32 125 1.00
ACGTcount: A:0.44, C:0.17, G:0.01, T:0.38
Consensus pattern (32 bp):
TAATTCTTATAACAAAAACATCATTCATCATT
Found at i:70187904 original size:20 final size:20
Alignment explanation
Indices: 70187862--70187901 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
70187852 AAATAATTTG
* *
70187862 AATATAAAATTACATATTCC
1 AATATAAAATAACATACTCC
70187882 AATATAAAATAACATGACTC
1 AATATAAAATAACAT-ACTC
70187902 AATTCAACCC
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 14 0.82
21 3 0.18
ACGTcount: A:0.53, C:0.15, G:0.03, T:0.30
Consensus pattern (20 bp):
AATATAAAATAACATACTCC
Found at i:70188201 original size:31 final size:31
Alignment explanation
Indices: 70188166--70188239 Score: 73
Period size: 30 Copynumber: 2.4 Consensus size: 31
70188156 TTATGTATTT
70188166 TTATATTAAATTATTTAAGC-ATCATGTA-CTA
1 TTATATTAAATTATTTAA-CTATCATGTATC-A
* * *
70188197 TTATACT-AATTTTTTAACTATCATTTATCA
1 TTATATTAAATTATTTAACTATCATGTATCA
70188227 TTATATTTAAATT
1 TTATA-TTAAATT
70188240 TTTGTATATT
Statistics
Matches: 35, Mismatches: 4, Indels: 7
0.76 0.09 0.15
Matches are distributed among these distances:
29 1 0.03
30 22 0.63
31 8 0.23
32 4 0.11
ACGTcount: A:0.36, C:0.09, G:0.03, T:0.51
Consensus pattern (31 bp):
TTATATTAAATTATTTAACTATCATGTATCA
Found at i:70193117 original size:50 final size:50
Alignment explanation
Indices: 70192993--70193241 Score: 284
Period size: 50 Copynumber: 4.8 Consensus size: 50
70192983 GATAATAACA
* * ** * *
70192993 TGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGATGTTCTCGTGAT-GG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGA-CCTCTCAT-CTCGG
* *
70193044 TGCCCATGCCATGTCCCAGACATGGTCTTATAGGGGACCTCTCATCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCGG
* * *
70193094 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGTCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCGG
* *
70193144 TGCCCATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATGATCTTAAGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTC---ATC-T-CGG
* *
70193199 ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCTCT
1 -TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCT
70193242 TTACCCAAAT
Statistics
Matches: 170, Mismatches: 21, Indels: 9
0.85 0.10 0.05
Matches are distributed among these distances:
49 1 0.01
50 92 0.54
51 33 0.19
53 2 0.01
54 1 0.01
55 2 0.01
56 39 0.23
ACGTcount: A:0.20, C:0.29, G:0.24, T:0.26
Consensus pattern (50 bp):
TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCGG
Found at i:70193171 original size:100 final size:104
Alignment explanation
Indices: 70192992--70193241 Score: 357
Period size: 100 Copynumber: 2.4 Consensus size: 104
70192982 TGATAATAAC
**
70192992 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGATGTTCTCGTGATGGTGCCCATGCCATG
1 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGA-CCTCTCGTGATGGTGCCCATGCCATG
* *
70193057 TCCCAGACATGGTCTTATAGGGGACCTCTC-ATC-T-CGG
65 TCCCAGACATGGTCTTACAGGGGACCTCTCAATCTTAAGG
* *
70193094 -TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGT-CTCGGTGCCCATGCCATG
1 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGTGAT-GGTGCCCATGCCATG
70193157 TCCCAGACATGGTCTTACAGGGGACCTCTCATGATCTTAAGG
65 TCCCAGACATGGTCTTACAGGGGACCTCTCA--ATCTTAAGG
* *
70193199 ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCTCT
1 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGACCTCT
70193242 TTACCCAAAT
Statistics
Matches: 133, Mismatches: 8, Indels: 10
0.88 0.05 0.07
Matches are distributed among these distances:
99 1 0.01
100 50 0.38
101 36 0.27
103 3 0.02
104 1 0.01
105 2 0.02
106 40 0.30
ACGTcount: A:0.21, C:0.29, G:0.24, T:0.26
Consensus pattern (104 bp):
ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGTGATGGTGCCCATGCCATGT
CCCAGACATGGTCTTACAGGGGACCTCTCAATCTTAAGG
Found at i:70193357 original size:13 final size:13
Alignment explanation
Indices: 70193336--70193367 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
70193326 GCTTGGATCA
*
70193336 TCATCAAATAAAT
1 TCATAAAATAAAT
70193349 TCATAAAATAAAT
1 TCATAAAATAAAT
70193362 TCATAA
1 TCATAA
70193368 TTGCTGGAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.56, C:0.12, G:0.00, T:0.31
Consensus pattern (13 bp):
TCATAAAATAAAT
Found at i:70193614 original size:30 final size:30
Alignment explanation
Indices: 70193579--70193636 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
70193569 CCTCGACTCT
*
70193579 AACTTTTTCAAAATTACAATTTTGCCCCTA
1 AACTTTTACAAAATTACAATTTTGCCCCTA
* *
70193609 AACTTTTACATAATTACATTTTTGCCCC
1 AACTTTTACAAAATTACAATTTTGCCCC
70193637 AAGGCTCGGA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.31, C:0.24, G:0.03, T:0.41
Consensus pattern (30 bp):
AACTTTTACAAAATTACAATTTTGCCCCTA
Found at i:70202124 original size:17 final size:18
Alignment explanation
Indices: 70202095--70202132 Score: 60
Period size: 17 Copynumber: 2.2 Consensus size: 18
70202085 GCCCAGCCAC
*
70202095 AAAGAGAAAAAAAAATAA
1 AAAGAGAAAAAAAAAGAA
70202113 AAAGAG-AAAAAAAAGAA
1 AAAGAGAAAAAAAAAGAA
70202130 AAA
1 AAA
70202133 ATTAAACCCC
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 13 0.68
18 6 0.32
ACGTcount: A:0.84, C:0.00, G:0.13, T:0.03
Consensus pattern (18 bp):
AAAGAGAAAAAAAAAGAA
Found at i:70205440 original size:5 final size:5
Alignment explanation
Indices: 70205430--70205473 Score: 56
Period size: 5 Copynumber: 8.8 Consensus size: 5
70205420 GAAAAAAATC
70205430 TTATT TTATT TT-TAT TTA-T TTATT TTATT TTATT TTGATT TTAT
1 TTATT TTATT TTAT-T TTATT TTATT TTATT TTATT TT-ATT TTAT
70205474 GTTAAATTAG
Statistics
Matches: 35, Mismatches: 0, Indels: 8
0.81 0.00 0.19
Matches are distributed among these distances:
4 5 0.14
5 25 0.71
6 5 0.14
ACGTcount: A:0.20, C:0.00, G:0.02, T:0.77
Consensus pattern (5 bp):
TTATT
Found at i:70205453 original size:14 final size:14
Alignment explanation
Indices: 70205430--70205473 Score: 54
Period size: 14 Copynumber: 3.0 Consensus size: 14
70205420 GAAAAAAATC
70205430 TTATTTTATTTTTAT
1 TTATTTTA-TTTTAT
70205445 TTA-TTTATTTTATT
1 TTATTTTATTTTA-T
70205459 TTATTTTGATTTTAT
1 TTATTTT-ATTTTAT
70205474 GTTAAATTAG
Statistics
Matches: 26, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
13 5 0.19
14 8 0.31
15 7 0.27
16 6 0.23
ACGTcount: A:0.20, C:0.00, G:0.02, T:0.77
Consensus pattern (14 bp):
TTATTTTATTTTAT
Found at i:70207139 original size:54 final size:54
Alignment explanation
Indices: 70207057--70207177 Score: 206
Period size: 54 Copynumber: 2.2 Consensus size: 54
70207047 CAAGCCAAGT
* * *
70207057 AGTTACACGGCCTAGCACATGGCTTGACACACTAGTATGTGAGGCCATTTTGAA
1 AGTTACACGGCCTAGCACATAGCTTGACACACTAGTATGTAAGGCCATTTCGAA
*
70207111 AGTTACACGGCCTAGCACATAGCTTGACACACTGGTATGTAAGGCCATTTCGAA
1 AGTTACACGGCCTAGCACATAGCTTGACACACTAGTATGTAAGGCCATTTCGAA
70207165 AGTTACACGGCCT
1 AGTTACACGGCCT
70207178 GGTACATGGG
Statistics
Matches: 63, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
54 63 1.00
ACGTcount: A:0.28, C:0.24, G:0.23, T:0.25
Consensus pattern (54 bp):
AGTTACACGGCCTAGCACATAGCTTGACACACTAGTATGTAAGGCCATTTCGAA
Found at i:70213802 original size:31 final size:31
Alignment explanation
Indices: 70213767--70213837 Score: 88
Period size: 31 Copynumber: 2.3 Consensus size: 31
70213757 TATTAGTTGG
70213767 TATATTAGTATGAATATCATGTACATTATGA
1 TATATTAGTATGAATATCATGTACATTATGA
* * * **
70213798 TATATTAGTGTGTATATTATGTATGTTATGA
1 TATATTAGTATGAATATCATGTACATTATGA
*
70213829 TATTTTAGT
1 TATATTAGT
70213838 GTATATATTA
Statistics
Matches: 34, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
31 34 1.00
ACGTcount: A:0.32, C:0.03, G:0.15, T:0.49
Consensus pattern (31 bp):
TATATTAGTATGAATATCATGTACATTATGA
Found at i:70213838 original size:31 final size:31
Alignment explanation
Indices: 70213792--70213858 Score: 116
Period size: 31 Copynumber: 2.2 Consensus size: 31
70213782 ATCATGTACA
*
70213792 TTATGATATATTAGTGTGTATATTATGTATG
1 TTATGATATATTAGTGTATATATTATGTATG
*
70213823 TTATGATATTTTAGTGTATATATTATGTATG
1 TTATGATATATTAGTGTATATATTATGTATG
70213854 TTATG
1 TTATG
70213859 TGTCAGACCC
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 34 1.00
ACGTcount: A:0.28, C:0.00, G:0.18, T:0.54
Consensus pattern (31 bp):
TTATGATATATTAGTGTATATATTATGTATG
Found at i:70220950 original size:19 final size:19
Alignment explanation
Indices: 70220928--70220980 Score: 61
Period size: 19 Copynumber: 2.7 Consensus size: 19
70220918 AAAAATTAGA
*
70220928 AAAAAAATATAAAAATCGT
1 AAAAAATTATAAAAATCGT
** *
70220947 AAAATTTTATAAAAATTGT
1 AAAAAATTATAAAAATCGT
70220966 AAAACAATTATAAAA
1 AAAA-AATTATAAAA
70220981 TATATAGAAA
Statistics
Matches: 27, Mismatches: 6, Indels: 1
0.79 0.18 0.03
Matches are distributed among these distances:
19 19 0.70
20 8 0.30
ACGTcount: A:0.64, C:0.04, G:0.04, T:0.28
Consensus pattern (19 bp):
AAAAAATTATAAAAATCGT
Found at i:70220984 original size:27 final size:27
Alignment explanation
Indices: 70220965--70221054 Score: 83
Period size: 28 Copynumber: 3.1 Consensus size: 27
70220955 ATAAAAATTG
70220965 TAAAACAATTATAAAATATATAGAAATA
1 TAAAA-AATTATAAAATATATAGAAATA
* *
70220993 TAAAAAATTATAAAACTTTATA-AAGTCA
1 TAAAAAATTATAAAA-TATATAGAAAT-A
* *
70221021 TAAGAAAATTATACAAAATGTAAAGAAATA
1 TAA-AAAATTAT--AAAATATATAGAAATA
70221051 TAAA
1 TAAA
70221055 TCTCATAAAA
Statistics
Matches: 51, Mismatches: 5, Indels: 11
0.76 0.07 0.16
Matches are distributed among these distances:
27 13 0.25
28 14 0.27
29 9 0.18
30 8 0.16
31 7 0.14
ACGTcount: A:0.62, C:0.04, G:0.06, T:0.28
Consensus pattern (27 bp):
TAAAAAATTATAAAATATATAGAAATA
Found at i:70221014 original size:20 final size:20
Alignment explanation
Indices: 70220946--70221016 Score: 53
Period size: 20 Copynumber: 3.7 Consensus size: 20
70220936 ATAAAAATCG
* *
70220946 TAAAATTTTAT-AAAAATTG
1 TAAAACTTTATAAAAAATTA
* *
70220965 TAAAACAATTATAAAATA-TA
1 TAAAAC-TTTATAAAAAATTA
70220985 TAGAAA---TATAAAAAATTA
1 TA-AAACTTTATAAAAAATTA
70221003 TAAAACTTTATAAA
1 TAAAACTTTATAAA
70221017 GTCATAAGAA
Statistics
Matches: 40, Mismatches: 5, Indels: 13
0.69 0.09 0.22
Matches are distributed among these distances:
17 11 0.28
18 4 0.10
19 5 0.12
20 13 0.32
21 7 0.17
ACGTcount: A:0.61, C:0.03, G:0.03, T:0.34
Consensus pattern (20 bp):
TAAAACTTTATAAAAAATTA
Found at i:70221280 original size:37 final size:37
Alignment explanation
Indices: 70221208--70221282 Score: 100
Period size: 37 Copynumber: 2.0 Consensus size: 37
70221198 CTAGAGATCA
**
70221208 TTATTTTTTTATAATTTTTATAAAATTTTACAATTTT
1 TTATTTTTTTATAATTTTTATAAAAAATTACAATTTT
70221245 TTATTTTTTTA-AGATTTTTATAAAAAATT-CTAATTTT
1 TTATTTTTTTATA-ATTTTTATAAAAAATTAC-AATTTT
70221282 T
1 T
70221283 AATAAATTTT
Statistics
Matches: 34, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
36 2 0.06
37 32 0.94
ACGTcount: A:0.33, C:0.03, G:0.01, T:0.63
Consensus pattern (37 bp):
TTATTTTTTTATAATTTTTATAAAAAATTACAATTTT
Found at i:70221326 original size:47 final size:45
Alignment explanation
Indices: 70221243--70221372 Score: 127
Period size: 46 Copynumber: 2.8 Consensus size: 45
70221233 TTTTACAATT
* * * *
70221243 TTTTATTTTTTTAAGATTTTTATAAAAAATT-CTAATTTTTAATAAA
1 TTTTATTTTTTT-ATATTTTTATTAAAATTTAATAATTTTT-ATAAA
*
70221289 TTTTATATTTTTTATATTTTTATTAAAATTTAATAATTTTTCTAAA
1 TTTTAT-TTTTTTATATTTTTATTAAAATTTAATAATTTTTATAAA
* **
70221335 TTTTATTGTTTTTTATAATTTTTTTTAATTTTTAATAA
1 TTTTA-T-TTTTTTAT-ATTTTTATTAAAATTTAATAA
70221373 GAGCATGGGT
Statistics
Matches: 71, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
46 30 0.42
47 23 0.32
48 18 0.25
ACGTcount: A:0.34, C:0.02, G:0.02, T:0.63
Consensus pattern (45 bp):
TTTTATTTTTTTATATTTTTATTAAAATTTAATAATTTTTATAAA
Done.