Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr9
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 91122320
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2661692 characters in sequence are not A, C, G, or T
File 219 of 279
Found at i:71685083 original size:25 final size:25
Alignment explanation
Indices: 71685049--71685143 Score: 154
Period size: 25 Copynumber: 3.8 Consensus size: 25
71685039 CTCTTTTAAT
* *
71685049 AACTGGGGCAAAGCCCTTTTTGATA
1 AACTGGGGCAAAGCCCTTTTCGGTA
71685074 AACTGGGGCAAAGCCCTTTTCGGTA
1 AACTGGGGCAAAGCCCTTTTCGGTA
*
71685099 AACTGGGGCAAAGCCCTTCTCGGTA
1 AACTGGGGCAAAGCCCTTTTCGGTA
*
71685124 AACTGGGGCATAGCCCTTTT
1 AACTGGGGCAAAGCCCTTTT
71685144 GCACTTCCTC
Statistics
Matches: 65, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
25 65 1.00
ACGTcount: A:0.24, C:0.24, G:0.26, T:0.25
Consensus pattern (25 bp):
AACTGGGGCAAAGCCCTTTTCGGTA
Found at i:71689080 original size:30 final size:30
Alignment explanation
Indices: 71689046--71689104 Score: 84
Period size: 30 Copynumber: 2.0 Consensus size: 30
71689036 CGATTTTCGA
* *
71689046 GCCTAGAGG-CAAAATGGTTATTTTGCCAAG
1 GCCTA-AGGACAAAATGGTCATTTTACCAAG
71689076 GCCTAAGGACAAAATGGTCATTTTACCAA
1 GCCTAAGGACAAAATGGTCATTTTACCAA
71689105 ATATGTAAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
29 3 0.12
30 23 0.88
ACGTcount: A:0.34, C:0.19, G:0.22, T:0.25
Consensus pattern (30 bp):
GCCTAAGGACAAAATGGTCATTTTACCAAG
Found at i:71689480 original size:46 final size:47
Alignment explanation
Indices: 71689427--71689646 Score: 191
Period size: 46 Copynumber: 4.7 Consensus size: 47
71689417 ACTTGTGTGT
* *
71689427 GCTAGTGTAAGACATGTCTGGGACATGTATCGGCCAC-ATTATGGA-A
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCACGA-GATGGAGA
* * *** * * * *
71689473 GCTAGTGTAAGACCATGTCTGGGTCATGGAAAATGCAATGAGA-CGAGT
1 GCTAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCACGAGATGGAGA
* *
71689521 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATGTA-A
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCACGAGATGGAGA
* * * *
71689567 GCCAGTGTAAGACATGTCTGGGACATGCATCAGCTACGAGAT-GATA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCACGAGATGGAGA
71689613 G-TCAGTGTAAGACCATGTCTGGGACATGGCATCG
1 GCT-AGTGTAAGA-CATGTCTGGGACAT-GCATCG
71689647 ACTTGAGATA
Statistics
Matches: 137, Mismatches: 28, Indels: 16
0.76 0.15 0.09
Matches are distributed among these distances:
45 1 0.01
46 69 0.50
47 43 0.31
48 23 0.17
49 1 0.01
ACGTcount: A:0.28, C:0.18, G:0.30, T:0.24
Consensus pattern (47 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCACGAGATGGAGA
Found at i:71689655 original size:47 final size:45
Alignment explanation
Indices: 71689524--71689684 Score: 177
Period size: 46 Copynumber: 3.5 Consensus size: 45
71689514 GACGAGTGCT
*
71689524 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATG-TAAGCC
1 AGTGTAAGACATGTCTGGGACATGCATC-GACTCGAGATGAT-AGCC
*
71689570 AGTGTAAGACATGTCTGGGACATGCATC-AGCTACGAGATGATAGTC
1 AGTGTAAGACATGTCTGGGACATGCATCGA-CT-CGAGATGATAGCC
*
71689616 AGTGTAAGACCATGTCTGGGACATGGCATCGACTTGAGATACGA-A-CC
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGACTCGAGAT--GATAGCC
*
71689663 AGTGTAAGACTATGTCTAGGAC
1 AGTGTAAGAC-ATGTCTGGGAC
71689685 TTGGCATTGG
Statistics
Matches: 101, Mismatches: 5, Indels: 17
0.82 0.04 0.14
Matches are distributed among these distances:
45 2 0.02
46 48 0.48
47 40 0.40
48 8 0.08
49 3 0.03
ACGTcount: A:0.29, C:0.19, G:0.29, T:0.23
Consensus pattern (45 bp):
AGTGTAAGACATGTCTGGGACATGCATCGACTCGAGATGATAGCC
Found at i:71692377 original size:28 final size:28
Alignment explanation
Indices: 71692312--71692462 Score: 205
Period size: 28 Copynumber: 5.4 Consensus size: 28
71692302 GAGATTGGCG
* * * *
71692312 CTAAGTGTGCGGGTTTAAATTGTACAGCA
1 CTAAGTGTGCGAGTTT-GATTATATAGCA
*
71692341 CTAAGTGTGCGAGTTTGATTATGTAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
* *
71692369 CTAAGTGTGCGAGCTTGATTATGTAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
*
71692397 CTAAGTGTGCGAGTTTGATTATATAACA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
71692425 CTAAGTGTGCGAG-TTGATTATATAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
*
71692452 CTGAGTGTGCG
1 CTAAGTGTGCG
71692463 GACTTAATAT
Statistics
Matches: 111, Mismatches: 11, Indels: 2
0.90 0.09 0.02
Matches are distributed among these distances:
27 23 0.21
28 73 0.66
29 15 0.14
ACGTcount: A:0.26, C:0.13, G:0.28, T:0.33
Consensus pattern (28 bp):
CTAAGTGTGCGAGTTTGATTATATAGCA
Found at i:71700346 original size:40 final size:40
Alignment explanation
Indices: 71700294--71700420 Score: 191
Period size: 40 Copynumber: 3.1 Consensus size: 40
71700284 CTCGATATAA
*
71700294 TATATATACGGGTTAAATCCCGCAGGCTTCGTGCTGGTAT
1 TATATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAT
*
71700334 TATATATCCGGGTTAAATCCCGCAGGTTTCGTGCTGGTAAT
1 TATATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGT-AT
* * *
71700375 ATATATATCTGGGTTAAATCCCGCAGGCTTAGTGCTGGTAC
1 -TATATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAT
71700416 TATAT
1 TATAT
71700421 CCGGACTTAG
Statistics
Matches: 79, Mismatches: 6, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
40 41 0.52
41 3 0.04
42 35 0.44
ACGTcount: A:0.24, C:0.19, G:0.24, T:0.34
Consensus pattern (40 bp):
TATATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAT
Found at i:71700380 original size:42 final size:42
Alignment explanation
Indices: 71700293--71700420 Score: 197
Period size: 42 Copynumber: 3.1 Consensus size: 42
71700283 TCTCGATATA
*
71700293 ATATATATACGGGTTAAATCCCGCAGGCTTCGTGCTGGT-AT
1 ATATATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAAT
*
71700334 -TATATATCCGGGTTAAATCCCGCAGGTTTCGTGCTGGTAAT
1 ATATATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAAT
* * *
71700375 ATATATATCTGGGTTAAATCCCGCAGGCTTAGTGCTGGTACT
1 ATATATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAAT
71700417 ATAT
1 ATAT
71700421 CCGGACTTAG
Statistics
Matches: 79, Mismatches: 6, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
40 36 0.46
41 2 0.03
42 41 0.52
ACGTcount: A:0.24, C:0.19, G:0.23, T:0.34
Consensus pattern (42 bp):
ATATATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAAT
Found at i:71702320 original size:45 final size:45
Alignment explanation
Indices: 71702251--71702352 Score: 143
Period size: 45 Copynumber: 2.3 Consensus size: 45
71702241 TTTGAGCTCA
* * *
71702251 TTGATTTGGTCCTAGTTCGTGATATATGTG-AGAAATCCGAACTTG
1 TTGAGTTGGTCCAAGGTCGTGATATATGTGAAG-AATCCGAACTTG
* *
71702296 TTGAGTTGGTCCAAGGTCGTGATATATGTGAAGCATCCGAGCTTG
1 TTGAGTTGGTCCAAGGTCGTGATATATGTGAAGAATCCGAACTTG
71702341 TTGAGTTGGTCC
1 TTGAGTTGGTCC
71702353 GAGTTCATCA
Statistics
Matches: 51, Mismatches: 5, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
45 49 0.96
46 2 0.04
ACGTcount: A:0.22, C:0.15, G:0.28, T:0.35
Consensus pattern (45 bp):
TTGAGTTGGTCCAAGGTCGTGATATATGTGAAGAATCCGAACTTG
Found at i:71703844 original size:20 final size:20
Alignment explanation
Indices: 71703821--71703866 Score: 65
Period size: 20 Copynumber: 2.3 Consensus size: 20
71703811 TGAGACACAG
*
71703821 GCGTGTCCCAAAGTACACGA
1 GCGTGTCCCAAAGCACACGA
* *
71703841 GCGTGTCCCGAAGCACACGG
1 GCGTGTCCCAAAGCACACGA
71703861 GCGTGT
1 GCGTGT
71703867 GCATTGCCTC
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.22, C:0.30, G:0.33, T:0.15
Consensus pattern (20 bp):
GCGTGTCCCAAAGCACACGA
Found at i:71705917 original size:49 final size:49
Alignment explanation
Indices: 71705753--71705988 Score: 310
Period size: 49 Copynumber: 4.8 Consensus size: 49
71705743 AGGTCGCATA
* * * * * *
71705753 TGTACTACTAAGTGCAGGCTACTATGCGTACCCGAAAACTGTGATCACGTG
1 TGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAA-T-TGGTCACGTG
* **
71705804 TGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAGGTCACGTG
1 TGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT-GGTCACGTG
71705854 TGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCACGTG
1 TGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCACGTG
* * *
71705903 TGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCTCATG
1 TGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCACGTG
* * *
71705952 TGTAGTACTATGTGCAGGCTACTATGCGTACCAGATA
1 TGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATA
71705989 GCTTTGGCTA
Statistics
Matches: 165, Mismatches: 19, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
49 89 0.54
50 46 0.28
51 30 0.18
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.29
Consensus pattern (49 bp):
TGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCACGTG
Found at i:71705924 original size:99 final size:100
Alignment explanation
Indices: 71705744--71705988 Score: 332
Period size: 99 Copynumber: 2.5 Consensus size: 100
71705734 TCTATTGTGA
* * * * *
71705744 GGTCGCATATGTACTACTAAGTGCAGGCTACTATGCGTACCCGAAAACTGTGATCACGTGTGTAG
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATAACTGTGATCACGTGTGTAG
* **
71705809 TACTAAGTGCAGGCTACTACGTGTATCAGATGGTT
66 TACTAAGTGCAGGCTACTACGTGTACCAGATAATT
* * * *
71705844 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAA-T-TGGTCACGTGTGTA
1 -GGTCACATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATAACTGTGATCACGTGTGTA
*
71705907 GTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
65 GTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
* *
71705943 GGTCTCATGTGTAGTACTATGTGCAGGCTACTATGCGTACCAGATA
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATA
71705989 GCTTTGGCTA
Statistics
Matches: 126, Mismatches: 18, Indels: 3
0.86 0.12 0.02
Matches are distributed among these distances:
98 41 0.33
99 45 0.36
100 1 0.01
101 39 0.31
ACGTcount: A:0.26, C:0.19, G:0.27, T:0.29
Consensus pattern (100 bp):
GGTCACATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATAACTGTGATCACGTGTGTAG
TACTAAGTGCAGGCTACTACGTGTACCAGATAATT
Found at i:71711802 original size:39 final size:39
Alignment explanation
Indices: 71711759--71711836 Score: 147
Period size: 39 Copynumber: 2.0 Consensus size: 39
71711749 ACTACAAACA
*
71711759 TAGTATTTGTATGTCATCATTCATGTATCTCTCATACTC
1 TAGTATTTGTATGTCATCATACATGTATCTCTCATACTC
71711798 TAGTATTTGTATGTCATCATACATGTATCTCTCATACTC
1 TAGTATTTGTATGTCATCATACATGTATCTCTCATACTC
71711837 ATTTTACCTT
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
39 38 1.00
ACGTcount: A:0.24, C:0.21, G:0.10, T:0.45
Consensus pattern (39 bp):
TAGTATTTGTATGTCATCATACATGTATCTCTCATACTC
Found at i:71719898 original size:44 final size:45
Alignment explanation
Indices: 71719835--71719972 Score: 145
Period size: 44 Copynumber: 3.0 Consensus size: 45
71719825 TGTGATGAAT
* *
71719835 GAGCATCCGAGCTTGTTGAGTTGGTTCAAGTTCATTATGGATGC-
1 GAGCATCCGAGCTCGTTGAGTTGGTTCGAGTTCATTATGGATGCA
* *
71719879 GAGCATCTGAGCTCGTTGAGTT-GATCTGAGTTCATCTGGATGTGATGCA
1 GAGCATCCGAGCTCGTTGAGTTGGTTC-GAGTTCAT-T--ATG-GATGCA
* *
71719928 TGTGACATCCGAGCTCGTTGAGTTGGTCCGAGTTCATTATGGATG
1 -GAG-CATCCGAGCTCGTTGAGTTGGTTCGAGTTCATTATGGATG
71719973 TATACATGTT
Statistics
Matches: 77, Mismatches: 8, Indels: 15
0.77 0.08 0.15
Matches are distributed among these distances:
43 3 0.04
44 27 0.35
45 1 0.01
47 7 0.09
48 8 0.10
50 3 0.04
51 26 0.34
52 2 0.03
ACGTcount: A:0.20, C:0.17, G:0.30, T:0.33
Consensus pattern (45 bp):
GAGCATCCGAGCTCGTTGAGTTGGTTCGAGTTCATTATGGATGCA
Found at i:71719943 original size:51 final size:51
Alignment explanation
Indices: 71719882--71719981 Score: 139
Period size: 51 Copynumber: 2.0 Consensus size: 51
71719872 TGGATGCGAG
* * * *
71719882 CATCTGAGCTCGTTGAGTTGATCTGAGTTCA-TCTGGATGTGATGCATGTGA
1 CATCCGAGCTCGTTGAGTTGATCCGAGTTCATTATGGATGT-ATACATGTGA
*
71719933 CATCCGAGCTCGTTGAGTTGGTCCGAGTTCATTATGGATGTATACATGT
1 CATCCGAGCTCGTTGAGTTGATCCGAGTTCATTATGGATGTATACATGT
71719982 TCTGAGGTAG
Statistics
Matches: 43, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
51 35 0.81
52 8 0.19
ACGTcount: A:0.20, C:0.17, G:0.28, T:0.35
Consensus pattern (51 bp):
CATCCGAGCTCGTTGAGTTGATCCGAGTTCATTATGGATGTATACATGTGA
Found at i:71723303 original size:27 final size:27
Alignment explanation
Indices: 71723266--71723532 Score: 180
Period size: 27 Copynumber: 10.0 Consensus size: 27
71723256 AAACATACAT
* * **
71723266 CACATAGGGGCAAAATAGTCATTTTGC
1 CACATAAGGGCAAAATCGTCATTTTAA
* *
71723293 CACATAAGGGCAAAA-CTGGCATTTTAT
1 CACATAAGGGCAAAATC-GTCATTTTAA
* * *
71723320 TATATAAAGGCAAAATCGTCATTTTAA
1 CACATAAGGGCAAAATCGTCATTTTAA
* * * *
71723347 CACATAAGGGAAAAACCTTCAATTTAA
1 CACATAAGGGCAAAATCGTCATTTTAA
* * * * **
71723374 CGCATAAAGGTAAAATAGTCATTTTGC
1 CACATAAGGGCAAAATCGTCATTTTAA
* * *
71723401 CACATAAGGACAAAATTGTCATTTTAT
1 CACATAAGGGCAAAATCGTCATTTTAA
* * * *
71723428 CACTTAA-AGCAAAATCGTTATTTTGA
1 CACATAAGGGCAAAATCGTCATTTTAA
* * *
71723454 CACATAATGGCAAAACCGTCAATTTAA
1 CACATAAGGGCAAAATCGTCATTTTAA
** * * **
71723481 CGTA-AAGGGAAAAATAGTCATTTTGC
1 CACATAAGGGCAAAATCGTCATTTTAA
*
71723507 CACATAAGGGAAAAATCGTCATTTTA
1 CACATAAGGGCAAAATCGTCATTTTA
71723533 CCCTACAGGG
Statistics
Matches: 177, Mismatches: 59, Indels: 8
0.73 0.24 0.03
Matches are distributed among these distances:
26 36 0.20
27 140 0.79
28 1 0.01
ACGTcount: A:0.40, C:0.16, G:0.15, T:0.28
Consensus pattern (27 bp):
CACATAAGGGCAAAATCGTCATTTTAA
Found at i:71723341 original size:54 final size:54
Alignment explanation
Indices: 71723264--71723521 Score: 245
Period size: 54 Copynumber: 4.8 Consensus size: 54
71723254 ATAAACATAC
** * *
71723264 ATCACATAGGGGCAAAATAGTCATTTTGCCACATAAGGGCAAAACTGGCATTTT
1 ATCACATAAAGGCAAAATAGTCATTTTGCCACATAAGGGCAAAACTGTCAATTT
* * * ** *
71723318 ATTATATAAAGGCAAAATCGTCATTTTAACACATAAGGGAAAAACCT-TCAATTT
1 ATCACATAAAGGCAAAATAGTCATTTTGCCACATAAGGGCAAAA-CTGTCAATTT
* * * * * *
71723372 AACGCATAAAGGTAAAATAGTCATTTTGCCACATAAGGACAAAATTGTCATTTT
1 ATCACATAAAGGCAAAATAGTCATTTTGCCACATAAGGGCAAAACTGTCAATTT
* * * * * *
71723426 ATCACTTAAA-GCAAAATCGTTATTTTGACACATAATGGCAAAACCGTCAATTT
1 ATCACATAAAGGCAAAATAGTCATTTTGCCACATAAGGGCAAAACTGTCAATTT
* * *
71723479 A--ACGTAAAGGGAAAAATAGTCATTTTGCCACATAAGGGAAAAA
1 ATCACATAAA-GGCAAAATAGTCATTTTGCCACATAAGGGCAAAA
71723522 TCGTCATTTT
Statistics
Matches: 159, Mismatches: 41, Indels: 9
0.76 0.20 0.04
Matches are distributed among these distances:
51 6 0.04
53 63 0.40
54 88 0.55
55 2 0.01
ACGTcount: A:0.41, C:0.16, G:0.16, T:0.27
Consensus pattern (54 bp):
ATCACATAAAGGCAAAATAGTCATTTTGCCACATAAGGGCAAAACTGTCAATTT
Found at i:71724797 original size:18 final size:19
Alignment explanation
Indices: 71724741--71724797 Score: 62
Period size: 20 Copynumber: 2.9 Consensus size: 19
71724731 CTCCAACGAT
* *
71724741 ATAAAAGAATAGAAAATAAA
1 ATAAAAGAAGAGACAA-AAA
71724761 ATAAAAGAAGAGACAAAAA
1 ATAAAAGAAGAGACAAAAA
*
71724780 ATAAATTGAAGAG-CAAAA
1 ATAAA-AGAAGAGACAAAA
71724798 CATTAAAACC
Statistics
Matches: 33, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
19 13 0.39
20 20 0.61
ACGTcount: A:0.70, C:0.04, G:0.14, T:0.12
Consensus pattern (19 bp):
ATAAAAGAAGAGACAAAAA
Found at i:71724804 original size:20 final size:20
Alignment explanation
Indices: 71724758--71724797 Score: 57
Period size: 19 Copynumber: 2.1 Consensus size: 20
71724748 AATAGAAAAT
*
71724758 AAAATAAA-AGAAGAGACAA
1 AAAATAAATTGAAGAGACAA
71724777 AAAATAAATTGAAGAG-CAA
1 AAAATAAATTGAAGAGACAA
71724796 AA
1 AA
71724798 CATTAAAACC
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
19 13 0.68
20 6 0.32
ACGTcount: A:0.70, C:0.05, G:0.15, T:0.10
Consensus pattern (20 bp):
AAAATAAATTGAAGAGACAA
Found at i:71731631 original size:21 final size:22
Alignment explanation
Indices: 71731586--71731631 Score: 58
Period size: 22 Copynumber: 2.1 Consensus size: 22
71731576 AGGCTCACAT
**
71731586 GCCCGTGTGGTCCAAGGGACAC
1 GCCCGTGTGACCCAAGGGACAC
*
71731608 GCCCGTGTGACCCTAGGG-CAC
1 GCCCGTGTGACCCAAGGGACAC
71731629 GCC
1 GCC
71731632 TGTGCTGGAT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
21 6 0.29
22 15 0.71
ACGTcount: A:0.15, C:0.37, G:0.35, T:0.13
Consensus pattern (22 bp):
GCCCGTGTGACCCAAGGGACAC
Found at i:71737295 original size:54 final size:54
Alignment explanation
Indices: 71737213--71737322 Score: 193
Period size: 54 Copynumber: 2.0 Consensus size: 54
71737203 AATATATATG
*
71737213 ATTGATTCTCTACATGTTATATCTACATACACGTATGTTATTTTCTTGCATTAC
1 ATTGATTCTCAACATGTTATATCTACATACACGTATGTTATTTTCTTGCATTAC
* *
71737267 ATTGATTCTCAACATGTTATTTCTACATACACGTATGTTATTTTGTTGCATTAC
1 ATTGATTCTCAACATGTTATATCTACATACACGTATGTTATTTTCTTGCATTAC
71737321 AT
1 AT
71737323 GAGATGGGTT
Statistics
Matches: 53, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
54 53 1.00
ACGTcount: A:0.26, C:0.17, G:0.10, T:0.46
Consensus pattern (54 bp):
ATTGATTCTCAACATGTTATATCTACATACACGTATGTTATTTTCTTGCATTAC
Found at i:71753686 original size:67 final size:63
Alignment explanation
Indices: 71753579--71753730 Score: 187
Period size: 67 Copynumber: 2.3 Consensus size: 63
71753569 AACACTTAGT
* * * * * *
71753579 ACCACCCATGTGACCTAGCCACTTTATCTCGTAGCTCTCTTGTCTACATGGTGTTCTTCACCCGG
1 ACCACACATGTGACCTAGCTACTTTATCCCGTAGCTCTCTTGTCTACATGGTATACAT--CCC-G
71753644 A
63 A
* *
71753645 ACCACACATGTGACCTAGCTACATTTATCCCGTAGCTCTCTTGTCTATATGGTATACATCCCGT
1 ACCACACATGTGACCTAGCTAC-TTTATCCCGTAGCTCTCTTGTCTACATGGTATACATCCCGA
*
71753709 ATCACACATGTGACCTAGCTAC
1 ACCACACATGTGACCTAGCTAC
71753731 CACATAGTAT
Statistics
Matches: 76, Mismatches: 9, Indels: 4
0.85 0.10 0.04
Matches are distributed among these distances:
64 22 0.29
65 3 0.04
66 20 0.26
67 31 0.41
ACGTcount: A:0.22, C:0.32, G:0.15, T:0.31
Consensus pattern (63 bp):
ACCACACATGTGACCTAGCTACTTTATCCCGTAGCTCTCTTGTCTACATGGTATACATCCCGA
Found at i:71757475 original size:15 final size:16
Alignment explanation
Indices: 71757455--71757484 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
71757445 TATTGGAGTT
71757455 TAAAAAT-CAAACATA
1 TAAAAATACAAACATA
71757470 TAAAAATACAAACAT
1 TAAAAATACAAACAT
71757485 TTCATATTAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 7 0.50
16 7 0.50
ACGTcount: A:0.67, C:0.13, G:0.00, T:0.20
Consensus pattern (16 bp):
TAAAAATACAAACATA
Found at i:71760459 original size:21 final size:22
Alignment explanation
Indices: 71760433--71760473 Score: 57
Period size: 21 Copynumber: 1.9 Consensus size: 22
71760423 TGTATTTTTG
71760433 TGTTTAATGGTAGA-AAATGCA
1 TGTTTAATGGTAGAGAAATGCA
* *
71760454 TGTTTATTGTTAGAGAAATG
1 TGTTTAATGGTAGAGAAATG
71760474 ACTTTTACTA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 12 0.71
22 5 0.29
ACGTcount: A:0.34, C:0.02, G:0.24, T:0.39
Consensus pattern (22 bp):
TGTTTAATGGTAGAGAAATGCA
Found at i:71761100 original size:48 final size:48
Alignment explanation
Indices: 71761046--71762086 Score: 1714
Period size: 48 Copynumber: 21.9 Consensus size: 48
71761036 GGTTATATGC
* * * *
71761046 GATCCCATGTAAGACCATGTTTGGGACATGACATTGGCATCGATATGA
1 GATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCTATAAGA
*
71761094 GGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCTATAAGA
1 GATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCTATAAGA
71761142 GATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCTATAAGA
1 GATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCTATAAGA
71761190 GATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCTATAAGA
1 GATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCTATAAGA
71761238 GATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCTATAAGA
1 GATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCTATAAGA
71761286 GATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCTATAAGA
1 GATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCTATAAGA
71761334 GATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCTATAAGA
1 GATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCTATAAGA
71761382 GATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCTATAAGA
1 GATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCTATAAGA
71761430 GATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCTATAAGA
1 GATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCTATAAGA
71761478 GATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCTATAAGA
1 GATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCTATAAGA
71761526 GATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCTATAAGA
1 GATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCTATAAGA
71761574 GATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCTATAAGA
1 GATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCTATAAGA
71761622 GATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCTATAAGA
1 GATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCTATAAGA
71761670 GATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCTATAAGA
1 GATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCTATAAGA
71761718 GATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCTATAAGA
1 GATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCTATAAGA
71761766 GATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCTATAAGA
1 GATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCTATAAGA
71761814 GATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCTATAAGA
1 GATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCTATAAGA
* *
71761862 GATCCCATGTAAGACCATGTCTGGGACATGGCATTAGCATCGATATA-A
1 GATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCTATA-AGA
* * * * * * * *
71761910 GATCCCCTATAAGACCATATATGGGATATGGCATTGGCATCAATATGT
1 GATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCTATAAGA
** * * *
71761958 GATTTCGTGTAAGACCATGTCTGGGACATGGCA-TCG-A--TATGAGA
1 GATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCTATAAGA
* * *
71762002 CAT--CATGTAAGACCATAG-CTGGG-CTAT--CA---GCATCGATATGTA
1 GATCCCATGTAAGACCAT-GTCTGGGAC-ATGGCATTGGCATCTATAAG-A
* *
71762044 TGATCCCATGTAAGACCATATCTGGGATATGGCATTGGCATCT
1 -GATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCT
71762087 TACTATGTGT
Statistics
Matches: 937, Mismatches: 38, Indels: 34
0.93 0.04 0.03
Matches are distributed among these distances:
38 1 0.00
39 1 0.00
40 2 0.00
41 4 0.00
42 20 0.02
43 3 0.00
44 5 0.01
45 20 0.02
46 1 0.00
47 4 0.00
48 870 0.93
49 1 0.00
50 5 0.01
ACGTcount: A:0.29, C:0.20, G:0.25, T:0.26
Consensus pattern (48 bp):
GATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCTATAAGA
Found at i:71767989 original size:48 final size:48
Alignment explanation
Indices: 71767918--71768149 Score: 311
Period size: 48 Copynumber: 4.8 Consensus size: 48
71767908 CAATAGGGTT
* *
71767918 ATATGAGATCCCATGTAAGACCATATTTGGGACATGGCATTGGCATCG
1 ATATGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCG
* * * *
71767966 ATATGAGATCCAATGTAAGACCATGTCTGGGATATGACATTGGCATCT
1 ATATGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCG
* *
71768014 ATATGAGATCCCATGTAAGACCATGTCCGGGACATGGCATTGGTATCG
1 ATATGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCG
* * * * *
71768062 ATATGAGATCCCATGTAAGACCCTATCCGAGATATGGCATTGGCATCG
1 ATATGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCG
* ** *
71768110 ATATGTGATTTCGTGTAAGACCATGTCTGGGACATGGCAT
1 ATATGAGATCCCATGTAAGACCATGTCTGGGACATGGCAT
71768150 CGATATGAGA
Statistics
Matches: 158, Mismatches: 26, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
48 158 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (48 bp):
ATATGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCG
Found at i:71776373 original size:42 final size:44
Alignment explanation
Indices: 71776298--71776407 Score: 122
Period size: 42 Copynumber: 2.6 Consensus size: 44
71776288 TCGACTTATT
* * *
71776298 ATTTATGTGTAAGACCATGTCTGGGACATTGGCATC-ATATTTG
1 ATTTATGTGTAAGACCATGTCTAGGAAAGTGGCATCAATATTTG
71776341 ATTT-TGTGTAAGA-CACTGTCTAGGAAAGTGGCATCAATATTTG
1 ATTTATGTGTAAGACCA-TGTCTAGGAAAGTGGCATCAATATTTG
** *
71776384 A-TTACATGTAAGACCACGTC-AGGA
1 ATTTATGTGTAAGACCATGTCTAGGA
71776408 CGTTGGTATT
Statistics
Matches: 57, Mismatches: 6, Indels: 9
0.79 0.08 0.12
Matches are distributed among these distances:
41 2 0.04
42 31 0.54
43 22 0.39
44 2 0.04
ACGTcount: A:0.30, C:0.15, G:0.23, T:0.33
Consensus pattern (44 bp):
ATTTATGTGTAAGACCATGTCTAGGAAAGTGGCATCAATATTTG
Found at i:71785523 original size:40 final size:40
Alignment explanation
Indices: 71785465--71785632 Score: 205
Period size: 40 Copynumber: 4.2 Consensus size: 40
71785455 TCTTTGGGAT
*
71785465 TTAG-CCGGATATAACAACTCGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAGCAACTCGCACAAATGCCTTCGGGTC
*
71785504 TTAGCCCGGATATAGCAACTTGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAGCAACTCGCACAAATGCCTTCGGGTC
* * * * *
71785544 TTGGCCCGGATATAATC-ACTAGCATAAATGCCTTCGGGAC
1 TTAGCCCGGATAT-AGCAACTCGCACAAATGCCTTCGGGTC
* * * *
71785584 ATAGCCCGGATACAGCAACTCGCACGAATGCCTTCGGATC
1 TTAGCCCGGATATAGCAACTCGCACAAATGCCTTCGGGTC
*
71785624 TTAGTCCGG
1 TTAGCCCGG
71785633 TTATCATCCG
Statistics
Matches: 108, Mismatches: 18, Indels: 5
0.82 0.14 0.04
Matches are distributed among these distances:
39 6 0.06
40 100 0.93
41 2 0.02
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.23
Consensus pattern (40 bp):
TTAGCCCGGATATAGCAACTCGCACAAATGCCTTCGGGTC
Found at i:71785602 original size:80 final size:80
Alignment explanation
Indices: 71785469--71785625 Score: 226
Period size: 80 Copynumber: 2.0 Consensus size: 80
71785459 TGGGATTTAG
* * * * *
71785469 CCGGATATAACAACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATATAGCAACTTGCACAAATG
1 CCGGATATAACAACTAGCACAAATGCCTTCGGGACATAGCCCGGATACAGCAACTCGCACAAATG
*
71785534 CCTTCGGGTCTTGGC
66 CCTTCGGATCTTGGC
* *
71785549 CCGGATATAATC-ACTAGCATAAATGCCTTCGGGACATAGCCCGGATACAGCAACTCGCACGAAT
1 CCGGATATAA-CAACTAGCACAAATGCCTTCGGGACATAGCCCGGATACAGCAACTCGCACAAAT
71785613 GCCTTCGGATCTT
65 GCCTTCGGATCTT
71785626 AGTCCGGTTA
Statistics
Matches: 68, Mismatches: 8, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
80 67 0.99
81 1 0.01
ACGTcount: A:0.27, C:0.29, G:0.22, T:0.23
Consensus pattern (80 bp):
CCGGATATAACAACTAGCACAAATGCCTTCGGGACATAGCCCGGATACAGCAACTCGCACAAATG
CCTTCGGATCTTGGC
Found at i:71787269 original size:284 final size:284
Alignment explanation
Indices: 71786759--71787325 Score: 1107
Period size: 284 Copynumber: 2.0 Consensus size: 284
71786749 CATCCAAATG
71786759 GTGCATAAGTTTTTTTTTTCAAGAATGGCATTGAACTTACCTTCCTCTTGCTATCCACCTTGGCC
1 GTGCATAAGTTTTTTTTTTCAAGAATGGCATTGAACTTACCTTCCTCTTGCTATCCACCTTGGCC
71786824 GAATTTCTTCCCTAAAGATTTTTCTTCCTCCTCTTTCTCTAGTCACGGCAATGGGGGAGTAAGGG
66 GAATTTCTTCCCTAAAGATTTTTCTTCCTCCTCTTTCTCTAGTCACGGCAATGGGGGAGTAAGGG
71786889 TGAGACAACTTTGGTTTCTCCTCCCACTCACCTCATGTTTTATCATTCTTAATTCACTATTTTAT
131 TGAGACAACTTTGGTTTCTCCTCCCACTCACCTCATGTTTTATCATTCTTAATTCACTATTTTAT
71786954 TTTCTAAACTAATAATGCTAATAGAAAATTCATATTATCATCAATGACCCATCCATGGCTGGCCA
196 TTTCTAAACTAATAATGCTAATAGAAAATTCATATTATCATCAATGACCCATCCATGGCTGGCCA
71787019 CTACTCATTATAATTGGAAATTTA
261 CTACTCATTATAATTGGAAATTTA
* *
71787043 GTGCATAAGTTTTTTTTTTCAAGAATGGCATTGTACTTACCTTCCTCTTGTTATCCACCTTGGCC
1 GTGCATAAGTTTTTTTTTTCAAGAATGGCATTGAACTTACCTTCCTCTTGCTATCCACCTTGGCC
71787108 GAATTTCTTCCCTAAAGATTTTTCTTCCTCCTCTTTCTCTAGTCACGGCAATGGGGGAGTAAGGG
66 GAATTTCTTCCCTAAAGATTTTTCTTCCTCCTCTTTCTCTAGTCACGGCAATGGGGGAGTAAGGG
71787173 TGAGACAACTTTGGTTTCTCCTCCCACTCACCTCATGTTTTATCATTCTTAATTCACTATTTTAT
131 TGAGACAACTTTGGTTTCTCCTCCCACTCACCTCATGTTTTATCATTCTTAATTCACTATTTTAT
*
71787238 TTTCTAAACTAATAATGCTAATAGAAAATTCATATTATCATCAATGACCCATCCATGGCTGGCCG
196 TTTCTAAACTAATAATGCTAATAGAAAATTCATATTATCATCAATGACCCATCCATGGCTGGCCA
71787303 CTACTCATTATAATTGGAAATTT
261 CTACTCATTATAATTGGAAATTT
71787326 GACATGCAAA
Statistics
Matches: 280, Mismatches: 3, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
284 280 1.00
ACGTcount: A:0.25, C:0.23, G:0.14, T:0.38
Consensus pattern (284 bp):
GTGCATAAGTTTTTTTTTTCAAGAATGGCATTGAACTTACCTTCCTCTTGCTATCCACCTTGGCC
GAATTTCTTCCCTAAAGATTTTTCTTCCTCCTCTTTCTCTAGTCACGGCAATGGGGGAGTAAGGG
TGAGACAACTTTGGTTTCTCCTCCCACTCACCTCATGTTTTATCATTCTTAATTCACTATTTTAT
TTTCTAAACTAATAATGCTAATAGAAAATTCATATTATCATCAATGACCCATCCATGGCTGGCCA
CTACTCATTATAATTGGAAATTTA
Found at i:71793786 original size:40 final size:40
Alignment explanation
Indices: 71793719--71793935 Score: 296
Period size: 40 Copynumber: 5.5 Consensus size: 40
71793709 ACCCAAGTAT
*
71793719 CTTCGGGAT-TTAG-CCGGATATAACAACTCGCACAAATGC
1 CTTCGGG-TCTTAGCCCGGATATAGCAACTCGCACAAATGC
71793758 CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
1 CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
*
71793798 CTTCGGGTCTTAGCCCGGAGATAGCAACTCGCACAAATGC
1 CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
* * *
71793838 CTTCGGGTCTTAGCCCGGATATAATC-ACTAGCATAAATGC
1 CTTCGGGTCTTAGCCCGGATAT-AGCAACTCGCACAAATGC
* * * *
71793878 CTTCGGGACATAGCCCGGATACAGCAACTCGCACGAATGC
1 CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
* *
71793918 CTTCGGATCTTAGTCCGG
1 CTTCGGGTCTTAGCCCGG
71793936 TTATCATCCG
Statistics
Matches: 157, Mismatches: 17, Indels: 7
0.87 0.09 0.04
Matches are distributed among these distances:
38 1 0.01
39 13 0.08
40 141 0.90
41 2 0.01
ACGTcount: A:0.26, C:0.29, G:0.23, T:0.23
Consensus pattern (40 bp):
CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
Found at i:71797358 original size:40 final size:40
Alignment explanation
Indices: 71797291--71797467 Score: 180
Period size: 40 Copynumber: 4.5 Consensus size: 40
71797281 ACCCAAGTAT
*
71797291 CTTCGGGAT-TTAG-CCGGATATAACAACTCGCACAAATGC
1 CTTCGGG-TCTTAGCCCGGATATAGCAACTCGCACAAATGC
*
71797330 CTTCGGGTCTTAGCCCGGATATAGCAACTTGCACAAATGC
1 CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
* * ** *
71797370 CTTCGGGTCTTGGCCCGGATATAATC-ACAAGCATAAATGC
1 CTTCGGGTCTTAGCCCGGATAT-AGCAACTCGCACAAATGC
** * * * *
71797410 CTTCGGAACATAGCCCGAATATAGAAACTCGCACTAATGC
1 CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
* *
71797450 CTTCGGATCTTAGTCCGG
1 CTTCGGGTCTTAGCCCGG
71797468 TTATCATCTG
Statistics
Matches: 112, Mismatches: 22, Indels: 7
0.79 0.16 0.05
Matches are distributed among these distances:
38 1 0.01
39 12 0.11
40 97 0.87
41 2 0.02
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.24
Consensus pattern (40 bp):
CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
Found at i:71798440 original size:78 final size:78
Alignment explanation
Indices: 71798347--71798502 Score: 294
Period size: 78 Copynumber: 2.0 Consensus size: 78
71798337 TCTACCATGG
*
71798347 CCGAATGCTCTAGCTACCACACCGTTTCAAATTTTGCCATGGGTTAAGCAAAGAACTTAATGACT
1 CCGAATGCTCTAGCTACCACACCGTTTCAAATTTTGCCATGGGTTAAGCAAAGAACCTAATGACT
71798412 AACTCACAAATGC
66 AACTCACAAATGC
*
71798425 CCGAATGCTCTAGCTATCACACCGTTTCAAATTTTGCCATGGGTTAAGCAAAGAACCTAATGACT
1 CCGAATGCTCTAGCTACCACACCGTTTCAAATTTTGCCATGGGTTAAGCAAAGAACCTAATGACT
71798490 AACTCACAAATGC
66 AACTCACAAATGC
71798503 TAAAACGAAA
Statistics
Matches: 76, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
78 76 1.00
ACGTcount: A:0.33, C:0.26, G:0.15, T:0.26
Consensus pattern (78 bp):
CCGAATGCTCTAGCTACCACACCGTTTCAAATTTTGCCATGGGTTAAGCAAAGAACCTAATGACT
AACTCACAAATGC
Found at i:71803996 original size:28 final size:28
Alignment explanation
Indices: 71803933--71804030 Score: 119
Period size: 27 Copynumber: 3.5 Consensus size: 28
71803923 ATATTAAGTC
*
71803933 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
*
71803960 TGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * *
71803988 CGCACACTTAGTGCTGA-ACAATTTAAACC
1 CGCACACTTAGTGCT-ATATAA-TCAAACT
71804017 CGCACACTTAGTGC
1 CGCACACTTAGTGC
71804031 CAATCTCATG
Statistics
Matches: 62, Mismatches: 6, Indels: 4
0.86 0.08 0.06
Matches are distributed among these distances:
27 21 0.34
28 21 0.34
29 20 0.32
ACGTcount: A:0.33, C:0.28, G:0.13, T:0.27
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:71817603 original size:27 final size:27
Alignment explanation
Indices: 71817549--71817712 Score: 170
Period size: 27 Copynumber: 6.1 Consensus size: 27
71817539 ATGGTATTTT
* *
71817549 TACCCCACAAGGGTATCTC-GTAATTC
1 TACCCTACAAGGGTATTTCGGTAATTC
** *
71817575 TACCCT-GTAGGGCTATTTCGGTATTTC
1 TACCCTACAAGGG-TATTTCGGTAATTC
71817602 TACCCTACAAGGGTATTTCGGTAATTC
1 TACCCTACAAGGGTATTTCGGTAATTC
* ** *
71817629 TATCCTACGGGGGTATTTCGATAATTC
1 TACCCTACAAGGGTATTTCGGTAATTC
* ***
71817656 TACCCTACAGGGGTATTTTAATAATTC
1 TACCCTACAAGGGTATTTCGGTAATTC
* *
71817683 TACCCTACAGGGGTATTTCGATAATTC
1 TACCCTACAAGGGTATTTCGGTAATTC
71817710 TAC
1 TAC
71817713 AACTTATCCA
Statistics
Matches: 117, Mismatches: 18, Indels: 5
0.84 0.13 0.04
Matches are distributed among these distances:
25 4 0.03
26 10 0.09
27 99 0.85
28 4 0.03
ACGTcount: A:0.24, C:0.23, G:0.18, T:0.35
Consensus pattern (27 bp):
TACCCTACAAGGGTATTTCGGTAATTC
Found at i:71817657 original size:54 final size:53
Alignment explanation
Indices: 71817549--71817712 Score: 202
Period size: 54 Copynumber: 3.1 Consensus size: 53
71817539 ATGGTATTTT
* * ** * * *
71817549 TACCCCACAAGGGTATCTCGTAATTCTACCCTGTAGGGCTATTTCGGTATTTC
1 TACCCTACAAGGGTATTTCGTAATTCTACCCTACAGGGGTATTTCGATAATTC
* *
71817602 TACCCTACAAGGGTATTTCGGTAATTCTATCCTACGGGGGTATTTCGATAATTC
1 TACCCTACAAGGGTATTTC-GTAATTCTACCCTACAGGGGTATTTCGATAATTC
* **
71817656 TACCCTACAGGGGTATTTTAATAATTCTACCCTACAGGGGTATTTCGATAATTC
1 TACCCTACAAGGGTA-TTTCGTAATTCTACCCTACAGGGGTATTTCGATAATTC
71817710 TAC
1 TAC
71817713 AACTTATCCA
Statistics
Matches: 95, Mismatches: 14, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
53 17 0.18
54 75 0.79
55 3 0.03
ACGTcount: A:0.24, C:0.23, G:0.18, T:0.35
Consensus pattern (53 bp):
TACCCTACAAGGGTATTTCGTAATTCTACCCTACAGGGGTATTTCGATAATTC
Found at i:71817673 original size:81 final size:80
Alignment explanation
Indices: 71817559--71817711 Score: 207
Period size: 81 Copynumber: 1.9 Consensus size: 80
71817549 TACCCCACAA
** ** * *
71817559 GGGTATCTCGTAATTCTACCCTGTAGGGCTATTTCGGTATTTCTACCCTACAAGGGTATTTCGGT
1 GGGTATCTCGTAATTCTACCCTACAGGGCTATTTCAATAATTCTACCCTACAAGGGTATTTCGAT
71817624 AATTCTATCCTACGG
66 AATTCTATCCTACGG
* * * *
71817639 GGGTATTTCGATAATTCTACCCTACAGGGGTATTTTAATAATTCTACCCTACAGGGGTATTTCGA
1 GGGTATCTCG-TAATTCTACCCTACAGGGCTATTTCAATAATTCTACCCTACAAGGGTATTTCGA
71817704 TAATTCTA
65 TAATTCTA
71817712 CAACTTATCC
Statistics
Matches: 62, Mismatches: 10, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
80 9 0.15
81 53 0.85
ACGTcount: A:0.24, C:0.20, G:0.20, T:0.37
Consensus pattern (80 bp):
GGGTATCTCGTAATTCTACCCTACAGGGCTATTTCAATAATTCTACCCTACAAGGGTATTTCGAT
AATTCTATCCTACGG
Found at i:71820486 original size:43 final size:42
Alignment explanation
Indices: 71820405--71820488 Score: 114
Period size: 42 Copynumber: 2.0 Consensus size: 42
71820395 TGTAAAACTA
* ***
71820405 TGTCTGGGACATTAGCATCGTATTTGATTTTGTGTAAGACCC
1 TGTCTGGGACAGTAGCATCGTATTTGATTACATGTAAGACCC
*
71820447 TGTCTGGGACAGTGGCATCGATATTTGATTACATGTAAGACC
1 TGTCTGGGACAGTAGCATCG-TATTTGATTACATGTAAGACC
71820489 ACGTATGCGA
Statistics
Matches: 36, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
42 18 0.50
43 18 0.50
ACGTcount: A:0.24, C:0.17, G:0.25, T:0.35
Consensus pattern (42 bp):
TGTCTGGGACAGTAGCATCGTATTTGATTACATGTAAGACCC
Found at i:71824953 original size:29 final size:29
Alignment explanation
Indices: 71824890--71824957 Score: 93
Period size: 29 Copynumber: 2.3 Consensus size: 29
71824880 TAATCAACCG
71824890 CGCACACTTAGTGCCATGCACTTTAAACT
1 CGCACACTTAGTGCCATGCACTTTAAACT
* **
71824919 CACACACTTAGTGCCATGCA-TTTCAAGTT
1 CGCACACTTAGTGCCATGCACTTT-AAACT
71824948 CGCACACTTA
1 CGCACACTTA
71824958 CCTTTTCCGC
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
28 3 0.09
29 31 0.91
ACGTcount: A:0.28, C:0.31, G:0.13, T:0.28
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCACTTTAAACT
Found at i:71825127 original size:29 final size:29
Alignment explanation
Indices: 71825064--71825131 Score: 93
Period size: 29 Copynumber: 2.3 Consensus size: 29
71825054 TAATCAACCG
71825064 CGCACACTTAGTGCCATGCACTTTAAACT
1 CGCACACTTAGTGCCATGCACTTTAAACT
* **
71825093 CACACACTTAGTGCCATGCA-TTTCAAGTT
1 CGCACACTTAGTGCCATGCACTTT-AAACT
71825122 CGCACACTTA
1 CGCACACTTA
71825132 CCTTTTCCGC
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
28 3 0.09
29 31 0.91
ACGTcount: A:0.28, C:0.31, G:0.13, T:0.28
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCACTTTAAACT
Found at i:71825301 original size:29 final size:29
Alignment explanation
Indices: 71825238--71825305 Score: 93
Period size: 29 Copynumber: 2.3 Consensus size: 29
71825228 TAATCAACCG
71825238 CGCACACTTAGTGCCATGCACTTTAAACT
1 CGCACACTTAGTGCCATGCACTTTAAACT
* **
71825267 CACACACTTAGTGCCATGCA-TTTCAAGTT
1 CGCACACTTAGTGCCATGCACTTT-AAACT
71825296 CGCACACTTA
1 CGCACACTTA
71825306 CCTTTTCCGC
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
28 3 0.09
29 31 0.91
ACGTcount: A:0.28, C:0.31, G:0.13, T:0.28
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCACTTTAAACT
Found at i:71825475 original size:29 final size:29
Alignment explanation
Indices: 71825412--71825479 Score: 93
Period size: 29 Copynumber: 2.3 Consensus size: 29
71825402 TAATCAACCG
71825412 CGCACACTTAGTGCCATGCACTTTAAACT
1 CGCACACTTAGTGCCATGCACTTTAAACT
* **
71825441 CACACACTTAGTGCCATGCA-TTTCAAGTT
1 CGCACACTTAGTGCCATGCACTTT-AAACT
71825470 CGCACACTTA
1 CGCACACTTA
71825480 CCTTTTCCGC
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
28 3 0.09
29 31 0.91
ACGTcount: A:0.28, C:0.31, G:0.13, T:0.28
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCACTTTAAACT
Found at i:71825649 original size:29 final size:29
Alignment explanation
Indices: 71825586--71825653 Score: 93
Period size: 29 Copynumber: 2.3 Consensus size: 29
71825576 TAATCAACCG
71825586 CGCACACTTAGTGCCATGCACTTTAAACT
1 CGCACACTTAGTGCCATGCACTTTAAACT
* **
71825615 CACACACTTAGTGCCATGCA-TTTCAAGTT
1 CGCACACTTAGTGCCATGCACTTT-AAACT
71825644 CGCACACTTA
1 CGCACACTTA
71825654 CCTTTTCCGC
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
28 3 0.09
29 31 0.91
ACGTcount: A:0.28, C:0.31, G:0.13, T:0.28
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCACTTTAAACT
Found at i:71825794 original size:29 final size:30
Alignment explanation
Indices: 71825755--71825833 Score: 110
Period size: 29 Copynumber: 2.7 Consensus size: 30
71825745 CTTAATAATC
71825755 AACCGCGCACACTTAGTGCCATGTAC-TTTA
1 AACC-CGCACACTTAGTGCCATGTACATTTA
*
71825785 AACTCGCACACTTAGTG-C-TGTACAATTTA
1 AACCCGCACACTTAGTGCCATGTAC-ATTTA
71825814 AACCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
71825834 ATCTCATGAC
Statistics
Matches: 43, Mismatches: 2, Indels: 7
0.83 0.04 0.13
Matches are distributed among these distances:
27 5 0.12
28 1 0.02
29 33 0.77
30 4 0.09
ACGTcount: A:0.29, C:0.30, G:0.15, T:0.25
Consensus pattern (30 bp):
AACCCGCACACTTAGTGCCATGTACATTTA
Found at i:71825827 original size:174 final size:174
Alignment explanation
Indices: 71824605--71825802 Score: 2342
Period size: 174 Copynumber: 6.9 Consensus size: 174
71824595 AACTCAAGGT
* *
71824605 ACTTACCTTTTCCGCTGTCCAAAATTGACTCGGTAAAGTCGCACCCTTCATGTAAATAATTTATA
1 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
* *
71824670 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCACACACTTAGTGCCATGT
66 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGC
71824735 ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
131 ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
71824779 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
1 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
71824844 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGC
66 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGC
71824909 ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
131 ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
71824953 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
1 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
71825018 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGC
66 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGC
71825083 ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
131 ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
71825127 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
1 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
71825192 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGC
66 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGC
71825257 ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
131 ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
71825301 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
1 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
71825366 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGC
66 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGC
71825431 ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
131 ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
71825475 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
1 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
71825540 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGC
66 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGC
71825605 ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
131 ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
71825649 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
1 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
*
71825714 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGT
66 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGC
*
71825779 ACTTTAAACTCGCACACTTAGTGC
131 ACTTTAAACTCACACACTTAGTGC
71825803 TGTACAATTT
Statistics
Matches: 1018, Mismatches: 6, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
174 1018 1.00
ACGTcount: A:0.31, C:0.25, G:0.14, T:0.30
Consensus pattern (174 bp):
ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGC
ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
Found at i:71827863 original size:6 final size:6
Alignment explanation
Indices: 71827845--71827932 Score: 74
Period size: 6 Copynumber: 14.3 Consensus size: 6
71827835 AAGAAACATT
*
71827845 ATCAGA A-CTAGA ATCAGA ATCAGA ATCAGA ATCAG- GTGACAGA ATCAGA
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA AT--CAGA ATCAGA
* * *
71827894 ATCAGA ATCAGT ATCAGGTA A-CAGA ATCAAA AGCAGA AT
1 ATCAGA ATCAGA ATCA-G-A ATCAGA ATCAGA ATCAGA AT
71827933 GTGAATGCAA
Statistics
Matches: 66, Mismatches: 8, Indels: 16
0.73 0.09 0.18
Matches are distributed among these distances:
5 4 0.06
6 53 0.80
7 7 0.11
8 2 0.03
ACGTcount: A:0.48, C:0.16, G:0.19, T:0.17
Consensus pattern (6 bp):
ATCAGA
Found at i:71827866 original size:18 final size:18
Alignment explanation
Indices: 71827845--71827932 Score: 74
Period size: 19 Copynumber: 4.8 Consensus size: 18
71827835 AAGAAACATT
71827845 ATCAGAA-CTAGAATCAGA
1 ATCAGAATC-AGAATCAGA
71827863 ATCAGAATCAGAATCAG-
1 ATCAGAATCAGAATCAGA
*
71827880 GTGACAGAATCAGAATCAGA
1 AT--CAGAATCAGAATCAGA
*
71827900 ATCAGTATCAGGTAA-CAGA
1 ATCAGAATCA-G-AATCAGA
* *
71827919 ATCAAAAGCAGAAT
1 ATCAGAATCAGAAT
71827933 GTGAATGCAA
Statistics
Matches: 57, Mismatches: 6, Indels: 14
0.74 0.08 0.18
Matches are distributed among these distances:
17 3 0.05
18 23 0.40
19 28 0.49
20 3 0.05
ACGTcount: A:0.48, C:0.16, G:0.19, T:0.17
Consensus pattern (18 bp):
ATCAGAATCAGAATCAGA
Found at i:71827892 original size:31 final size:31
Alignment explanation
Indices: 71827854--71827932 Score: 122
Period size: 31 Copynumber: 2.5 Consensus size: 31
71827844 TATCAGAACT
*
71827854 AGAATCAGAATCAGAATCAGAATCAGGTGAC
1 AGAATCAGAATCAGAATCAGAATCAGGTAAC
*
71827885 AGAATCAGAATCAGAATCAGTATCAGGTAAC
1 AGAATCAGAATCAGAATCAGAATCAGGTAAC
* *
71827916 AGAATCAAAAGCAGAAT
1 AGAATCAGAATCAGAAT
71827933 GTGAATGCAA
Statistics
Matches: 44, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
31 44 1.00
ACGTcount: A:0.48, C:0.15, G:0.20, T:0.16
Consensus pattern (31 bp):
AGAATCAGAATCAGAATCAGAATCAGGTAAC
Found at i:71828143 original size:67 final size:67
Alignment explanation
Indices: 71828035--71828188 Score: 263
Period size: 67 Copynumber: 2.3 Consensus size: 67
71828025 CACCACAGAA
*
71828035 ATTGCAGCGAGGTTGCCAGATATTGTGACGAAGTCACCAGAACAGATATAAGTGGCGAAGCCACC
1 ATTGCAGCGAGGCTGCCAGATATTGTGACGAAGTCACCAGAACAGATATAAGTGGCGAAGCCACC
71828100 AG
66 AG
* * * *
71828102 ATTGCAGCGAGGCTGCCAGATATTGTGACGAAGTTACCAGAACAGATATAGGTGGTGAGGCCACC
1 ATTGCAGCGAGGCTGCCAGATATTGTGACGAAGTCACCAGAACAGATATAAGTGGCGAAGCCACC
71828167 AG
66 AG
71828169 ATTGCAGCGAGGCTGCCAGA
1 ATTGCAGCGAGGCTGCCAGA
71828189 ACGCTTCCTC
Statistics
Matches: 82, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
67 82 1.00
ACGTcount: A:0.31, C:0.21, G:0.31, T:0.18
Consensus pattern (67 bp):
ATTGCAGCGAGGCTGCCAGATATTGTGACGAAGTCACCAGAACAGATATAAGTGGCGAAGCCACC
AG
Found at i:71828468 original size:27 final size:26
Alignment explanation
Indices: 71828414--71828741 Score: 327
Period size: 27 Copynumber: 12.3 Consensus size: 26
71828404 GGGGTAAAAT
* *
71828414 GGTAATTTTACCC-A-AGGGTATCTC
1 GGTAATTCTACCCTACAGGGTATTTC
*
71828438 AGTAATTCTACCCTACAGGGATATTTC
1 GGTAATTCTACCCTACAGGG-TATTTC
* *
71828465 AGTAATTCTACCCTATAAGGGTATTTC
1 GGTAATTCTACCCTA-CAGGGTATTTC
* *
71828492 GGTATTTCTACCTTACAAGGGTATTTC
1 GGTAATTCTACCCTAC-AGGGTATTTC
* *
71828519 GATAATTCTACCCTACAGGGGTATTTT
1 GGTAATTCTACCCTACA-GGGTATTTC
* * *
71828546 AGTAATTCTACCCTATAGGGGTATTTT
1 GGTAATTCTACCCTACA-GGGTATTTC
* * *
71828573 GGTATTTCTACCTTATAGGGGTATTTC
1 GGTAATTCTACCCTACA-GGGTATTTC
* *
71828600 GGTATTTCTACCCTACAAGGGTATTTT
1 GGTAATTCTACCCTAC-AGGGTATTTC
* *
71828627 AGTAATTCTACCCTACAAGGGTATTTT
1 GGTAATTCTACCCTAC-AGGGTATTTC
* *
71828654 GGTATTTCTACCCTACAGGGGTATTTT
1 GGTAATTCTACCCTACA-GGGTATTTC
*
71828681 GGTATTTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTAC-AGGGTATTTC
*
71828708 GGTATTTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTAC-AGGGTATTTC
*
71828735 GATAATT
1 GGTAATT
71828742 TTGTAAATCA
Statistics
Matches: 266, Mismatches: 29, Indels: 15
0.86 0.09 0.05
Matches are distributed among these distances:
24 11 0.04
25 1 0.00
26 6 0.02
27 242 0.91
28 6 0.02
ACGTcount: A:0.25, C:0.19, G:0.18, T:0.38
Consensus pattern (26 bp):
GGTAATTCTACCCTACAGGGTATTTC
Found at i:71828501 original size:54 final size:54
Alignment explanation
Indices: 71828426--71828734 Score: 379
Period size: 54 Copynumber: 5.7 Consensus size: 54
71828416 TAATTTTACC
* * *
71828426 CAAGGGTATCTCAGTAATTCTACCCTAC-AGGGATATTTCAGTAATTCTACCCTA
1 CAAGGGTATTTCGGTATTTCTACCCTACAAGGG-TATTTCAGTAATTCTACCCTA
* *
71828480 TAAGGGTATTTCGGTATTTCTACCTTACAAGGGTATTTC-GATAATTCTACCCTA
1 CAAGGGTATTTCGGTATTTCTACCCTACAAGGGTATTTCAG-TAATTCTACCCTA
* ** * * * ** * *
71828534 CAGGGGTATTTTAGTAATTCTACCCTATAGGGGTATTTTGGTATTTCTACCTTA
1 CAAGGGTATTTCGGTATTTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTA
* * *
71828588 TAGGGGTATTTCGGTATTTCTACCCTACAAGGGTATTTTAGTAATTCTACCCTA
1 CAAGGGTATTTCGGTATTTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTA
* * ** *
71828642 CAAGGGTATTTTGGTATTTCTACCCTACAGGGGTATTTTGGTATTTCTACCCTA
1 CAAGGGTATTTCGGTATTTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTA
71828696 CAAGGGTATTTCGGTATTTCTACCCTACAAGGGTATTTC
1 CAAGGGTATTTCGGTATTTCTACCCTACAAGGGTATTTC
71828735 GATAATTTTG
Statistics
Matches: 218, Mismatches: 34, Indels: 6
0.84 0.13 0.02
Matches are distributed among these distances:
53 1 0.00
54 212 0.97
55 5 0.02
ACGTcount: A:0.24, C:0.19, G:0.18, T:0.38
Consensus pattern (54 bp):
CAAGGGTATTTCGGTATTTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTA
Found at i:71828757 original size:81 final size:81
Alignment explanation
Indices: 71828426--71828735 Score: 415
Period size: 81 Copynumber: 3.8 Consensus size: 81
71828416 TAATTTTACC
* * * *
71828426 CAAGGGTATCTCAGTAATTCTACCCTAC-AGGGATATTTCAGTAATTCTACCCTATAAGGGTATT
1 CAAGGGTATTTCGGTATTTCTACCCTACAAGGG-TATTTCAGTAATTCTACCCTACAAGGGTATT
*
71828490 TCGGTATTTCTACCTTA
65 TCGGTATTTCTACCCTA
* * * * * *
71828507 CAAGGGTATTTCGATAATTCTACCCTACAGGGGTATTTTAGTAATTCTACCCTATAGGGGTATTT
1 CAAGGGTATTTCGGTATTTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTACAAGGGTATTT
* *
71828572 TGGTATTTCTACCTTA
66 CGGTATTTCTACCCTA
* * *
71828588 TAGGGGTATTTCGGTATTTCTACCCTACAAGGGTATTTTAGTAATTCTACCCTACAAGGGTATTT
1 CAAGGGTATTTCGGTATTTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTACAAGGGTATTT
*
71828653 TGGTATTTCTACCCTA
66 CGGTATTTCTACCCTA
* * * *
71828669 CAGGGGTATTTTGGTATTTCTACCCTACAAGGGTATTTCGGTATTTCTACCCTACAAGGGTATTT
1 CAAGGGTATTTCGGTATTTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTACAAGGGTATTT
71828734 CG
66 CG
71828736 ATAATTTTGT
Statistics
Matches: 207, Mismatches: 21, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
81 204 0.99
82 3 0.01
ACGTcount: A:0.24, C:0.19, G:0.19, T:0.38
Consensus pattern (81 bp):
CAAGGGTATTTCGGTATTTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTACAAGGGTATTT
CGGTATTTCTACCCTA
Found at i:71828767 original size:27 final size:27
Alignment explanation
Indices: 71828737--71828863 Score: 164
Period size: 27 Copynumber: 4.7 Consensus size: 27
71828727 GGTATTTCGA
* * *
71828737 TAATTTTGTAAATCAAGGGTAAAACTG
1 TAATTCTGTAAATCGAGGGTAAAACGG
*
71828764 TAATTCTGTAAATCGAGCGTAAAACGG
1 TAATTCTGTAAATCGAGGGTAAAACGG
* *
71828791 TAATTTTGTAAATCGAGGGTGAAACGG
1 TAATTCTGTAAATCGAGGGTAAAACGG
* *
71828818 TAATTCTATAAATCGAGGGTAAAATGG
1 TAATTCTGTAAATCGAGGGTAAAACGG
**
71828845 TAATTCTACAAATCGAGGG
1 TAATTCTGTAAATCGAGGG
71828864 CATTTCAGTA
Statistics
Matches: 88, Mismatches: 12, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 88 1.00
ACGTcount: A:0.38, C:0.10, G:0.23, T:0.29
Consensus pattern (27 bp):
TAATTCTGTAAATCGAGGGTAAAACGG
Found at i:71831171 original size:28 final size:25
Alignment explanation
Indices: 71831121--71831179 Score: 100
Period size: 25 Copynumber: 2.4 Consensus size: 25
71831111 AGCTATAAAT
71831121 GGTAAGCTCCTCCGAGCTTAATAAC
1 GGTAAGCTCCTCCGAGCTTAATAAC
*
71831146 GGTAAGCTCCTCCGAGCTTAATAAT
1 GGTAAGCTCCTCCGAGCTTAATAAC
*
71831171 AGTAAGCTC
1 GGTAAGCTC
71831180 ATGTAAGCTA
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
25 32 1.00
ACGTcount: A:0.29, C:0.25, G:0.20, T:0.25
Consensus pattern (25 bp):
GGTAAGCTCCTCCGAGCTTAATAAC
Found at i:71831215 original size:25 final size:25
Alignment explanation
Indices: 71831121--71831213 Score: 89
Period size: 25 Copynumber: 3.7 Consensus size: 25
71831111 AGCTATAAAT
*
71831121 GGTAAGCTCCTCCGAGCTTAATAAC
1 GGTAAGCTCCTACGAGCTTAATAAC
* *
71831146 GGTAAGCTCCTCCGAGCTTAATAAT
1 GGTAAGCTCCTACGAGCTTAATAAC
* * ***
71831171 AGTAAGCTCATGTAAGC-TAAGTAAC
1 GGTAAGCTCCTACGAGCTTAA-TAAC
*
71831196 GGTAAGCTCGTACGAGCT
1 GGTAAGCTCCTACGAGCT
71831214 AAAATTGGTA
Statistics
Matches: 54, Mismatches: 12, Indels: 3
0.78 0.17 0.04
Matches are distributed among these distances:
24 3 0.06
25 51 0.94
ACGTcount: A:0.30, C:0.23, G:0.23, T:0.25
Consensus pattern (25 bp):
GGTAAGCTCCTACGAGCTTAATAAC
Found at i:71832101 original size:20 final size:20
Alignment explanation
Indices: 71832073--71832110 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
71832063 AACTATCATG
*
71832073 TTTTCTTTATTTTATTAACC
1 TTTTATTTATTTTATTAACC
71832093 TTTTATTTATTTTATTAA
1 TTTTATTTATTTTATTAA
71832111 TAAAAAACAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.24, C:0.08, G:0.00, T:0.68
Consensus pattern (20 bp):
TTTTATTTATTTTATTAACC
Found at i:71836242 original size:27 final size:27
Alignment explanation
Indices: 71836212--71836389 Score: 178
Period size: 27 Copynumber: 6.6 Consensus size: 27
71836202 ATATTGAGTC
* *
71836212 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
* *
71836239 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
*
71836266 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAATC-AACT
** ** *
71836294 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
* **
71836321 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAATCAACT
* * *
71836348 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
*
71836375 CACACACTTAGTGCT
1 CGCACACTTAGTGCT
71836390 GTACAATTTA
Statistics
Matches: 128, Mismatches: 20, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
27 104 0.81
28 24 0.19
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:71836351 original size:82 final size:81
Alignment explanation
Indices: 71836233--71836388 Score: 224
Period size: 82 Copynumber: 1.9 Consensus size: 81
71836223 TGCTATATAA
* * *
71836233 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCACA
71836298 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
71836315 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCACA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCACA
71836379 CACTTAGTGC
65 CACTTAGTGC
71836389 TGTACAATTT
Statistics
Matches: 66, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
81 15 0.23
82 51 0.77
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCACAC
ACTTAGTGCCGCATGG
Found at i:71840040 original size:31 final size:33
Alignment explanation
Indices: 71839970--71840047 Score: 90
Period size: 31 Copynumber: 2.4 Consensus size: 33
71839960 TTTAGTTAAT
* *
71839970 GTCATGCATTAT-TGATCTACATATTTTAATTAT
1 GTCATGCATTATGTGATCTACA-ATTTTAATAAA
* *
71840003 GACATGCATTATGTGTTCTAC-A-TTTAATAAA
1 GTCATGCATTATGTGATCTACAATTTTAATAAA
71840034 GTCATGCATTATGT
1 GTCATGCATTATGT
71840048 AACTTCCATA
Statistics
Matches: 39, Mismatches: 5, Indels: 4
0.81 0.10 0.08
Matches are distributed among these distances:
31 20 0.51
32 1 0.03
33 11 0.28
34 7 0.18
ACGTcount: A:0.31, C:0.13, G:0.13, T:0.44
Consensus pattern (33 bp):
GTCATGCATTATGTGATCTACAATTTTAATAAA
Found at i:71841718 original size:17 final size:17
Alignment explanation
Indices: 71841698--71841733 Score: 63
Period size: 17 Copynumber: 2.1 Consensus size: 17
71841688 AAATCCTAGG
71841698 AAGCATGAAATGTTGAA
1 AAGCATGAAATGTTGAA
*
71841715 AAGCATGAAATGTTTAA
1 AAGCATGAAATGTTGAA
71841732 AA
1 AA
71841734 TGATTTAGGC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.50, C:0.06, G:0.19, T:0.25
Consensus pattern (17 bp):
AAGCATGAAATGTTGAA
Found at i:71844317 original size:23 final size:22
Alignment explanation
Indices: 71844265--71844317 Score: 56
Period size: 23 Copynumber: 2.4 Consensus size: 22
71844255 TCCACGTCTT
*
71844265 TTTCTTTTGTTTCTTTTTCTAA
1 TTTCTTTTCTTTCTTTTTCTAA
71844287 -TTCATTTTCTCTTCTTTCTTC-AA
1 TTTC-TTTTCT-TTCTTT-TTCTAA
71844310 TTTCTTTT
1 TTTCTTTT
71844318 TCACTCTCAA
Statistics
Matches: 26, Mismatches: 1, Indels: 7
0.76 0.03 0.21
Matches are distributed among these distances:
21 3 0.12
22 5 0.19
23 12 0.46
24 6 0.23
ACGTcount: A:0.09, C:0.19, G:0.02, T:0.70
Consensus pattern (22 bp):
TTTCTTTTCTTTCTTTTTCTAA
Found at i:71847748 original size:62 final size:62
Alignment explanation
Indices: 71847671--71847794 Score: 239
Period size: 62 Copynumber: 2.0 Consensus size: 62
71847661 TAATTCTGGG
71847671 AAGAGAGTTGTTTTGAAGGAAATTTTCAAAGGTGTTTTTGAATAAATTCTATTCAATTTGTT
1 AAGAGAGTTGTTTTGAAGGAAATTTTCAAAGGTGTTTTTGAATAAATTCTATTCAATTTGTT
*
71847733 AAGAGCGTTGTTTTGAAGGAAATTTTCAAAGGTGTTTTTGAATAAATTCTATTCAATTTGTT
1 AAGAGAGTTGTTTTGAAGGAAATTTTCAAAGGTGTTTTTGAATAAATTCTATTCAATTTGTT
71847795 CATTAGTCAG
Statistics
Matches: 61, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
62 61 1.00
ACGTcount: A:0.31, C:0.06, G:0.19, T:0.44
Consensus pattern (62 bp):
AAGAGAGTTGTTTTGAAGGAAATTTTCAAAGGTGTTTTTGAATAAATTCTATTCAATTTGTT
Found at i:71847961 original size:28 final size:27
Alignment explanation
Indices: 71847922--71847988 Score: 77
Period size: 27 Copynumber: 2.6 Consensus size: 27
71847912 AAATATGTAA
71847922 TAATTA-TAAAATAATTAAATTTTACT
1 TAATTATTAAAATAATTAAATTTTACT
* *
71847948 TCAATTATTAAAAT-TTTTAATTTTACT
1 T-AATTATTAAAATAATTAAATTTTACT
*
71847975 TAATT-TTATAATAA
1 TAATTATTAAAATAA
71847989 ATTTTGATTA
Statistics
Matches: 34, Mismatches: 4, Indels: 6
0.77 0.09 0.14
Matches are distributed among these distances:
25 6 0.18
26 5 0.15
27 17 0.50
28 6 0.18
ACGTcount: A:0.45, C:0.04, G:0.00, T:0.51
Consensus pattern (27 bp):
TAATTATTAAAATAATTAAATTTTACT
Found at i:71850290 original size:47 final size:45
Alignment explanation
Indices: 71850189--71850358 Score: 146
Period size: 47 Copynumber: 3.7 Consensus size: 45
71850179 ACCCGTAATA
* * * * *
71850189 AACTCGGAACGCAACTCAACGAGCTCGGGTG-TTCGCATCCATAATG
1 AACTCGGAACACAACTCAACGAGTTCGGATGCTT-TCATTCAT-ATG
* *
71850235 AACACGGAACACAACTCAAAGAGTTCGGATGCTTTCATTCATAGGTG
1 AACTCGGAACACAACTCAACGAGTTCGGATGCTTTCATTCATA--TG
** * *
71850282 AACTCGGAATGCAACTCAACGAGTTCGGATGCCTCATAATTC-TCATG
1 AACTCGGAACACAACTCAACGAGTTCGGATG-CT-TTCATTCAT-ATG
* *
71850329 AACTCGGACCACAACTCAATGAGTTCGGAT
1 AACTCGGAACACAACTCAACGAGTTCGGAT
71850359 CTCAATTTCC
Statistics
Matches: 101, Mismatches: 17, Indels: 11
0.78 0.13 0.09
Matches are distributed among these distances:
45 1 0.01
46 32 0.32
47 59 0.58
48 3 0.03
49 6 0.06
ACGTcount: A:0.31, C:0.25, G:0.21, T:0.22
Consensus pattern (45 bp):
AACTCGGAACACAACTCAACGAGTTCGGATGCTTTCATTCATATG
Found at i:71855054 original size:43 final size:42
Alignment explanation
Indices: 71854951--71855061 Score: 134
Period size: 42 Copynumber: 2.6 Consensus size: 42
71854941 ATAGGATCGC
* * *
71854951 ACGGGTCACACAAGACGACTGTGGACTATTCTGTTAAGGTTG
1 ACGGGTCACACGAGACGATTGTGGACTATTCTGTTAAGGTCG
* *
71854993 ACGGGTCACACGAGACGATTGTGGACTGTTTTGTTAAGGTCG
1 ACGGGTCACACGAGACGATTGTGGACTATTCTGTTAAGGTCG
* *
71855035 TACGGGTCGA-GCGAGACGATTATGGAC
1 -ACGGGTC-ACACGAGACGATTGTGGAC
71855062 CTACTGACAG
Statistics
Matches: 60, Mismatches: 7, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
42 37 0.62
43 22 0.37
44 1 0.02
ACGTcount: A:0.24, C:0.18, G:0.32, T:0.25
Consensus pattern (42 bp):
ACGGGTCACACGAGACGATTGTGGACTATTCTGTTAAGGTCG
Found at i:71855112 original size:22 final size:22
Alignment explanation
Indices: 71855087--71855172 Score: 68
Period size: 22 Copynumber: 3.9 Consensus size: 22
71855077 AGCCACTTGA
71855087 TCTGATTATGGCTCTGTGCCAT
1 TCTGATTATGGCTCTGTGCCAT
** * *
71855109 TCTGAAGATGGCTTTGTTCCAT
1 TCTGATTATGGCTCTGTGCCAT
* * *
71855131 CCCGATTATGGCT-TCATGCCA-
1 TCTGATTATGGCTCT-GTGCCAT
*
71855152 TCTTGATCATGGCTCTGTGCC
1 TC-TGATTATGGCTCTGTGCC
71855173 TATCATATTA
Statistics
Matches: 47, Mismatches: 14, Indels: 6
0.70 0.21 0.09
Matches are distributed among these distances:
21 2 0.04
22 44 0.94
23 1 0.02
ACGTcount: A:0.15, C:0.26, G:0.22, T:0.37
Consensus pattern (22 bp):
TCTGATTATGGCTCTGTGCCAT
Found at i:71858302 original size:21 final size:21
Alignment explanation
Indices: 71858273--71858313 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
71858263 AACAAATTGA
* *
71858273 TAATTTGTTTTGTTATATATG
1 TAATATGTTTTGTTACATATG
*
71858294 TAATATGTTTTTTTACATAT
1 TAATATGTTTTGTTACATAT
71858314 ATTGATTTGT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.27, C:0.02, G:0.10, T:0.61
Consensus pattern (21 bp):
TAATATGTTTTGTTACATATG
Found at i:71872382 original size:19 final size:19
Alignment explanation
Indices: 71872347--71872384 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
71872337 TTGCAATTTA
*
71872347 AATTTTTATTTTCTTTTCT
1 AATTTTTATTTTATTTTCT
71872366 AATTTTTCA-TTTATTTTCT
1 AATTTTT-ATTTTATTTTCT
71872385 CTTGACAGGA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 16 0.94
20 1 0.06
ACGTcount: A:0.18, C:0.11, G:0.00, T:0.71
Consensus pattern (19 bp):
AATTTTTATTTTATTTTCT
Found at i:71874550 original size:40 final size:40
Alignment explanation
Indices: 71874313--71874536 Score: 278
Period size: 40 Copynumber: 5.6 Consensus size: 40
71874303 TGAATGATGT
* * * *
71874313 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* *
71874353 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-A
* *
71874393 CTGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
* *
71874431 TCCGGGTTAAGTCCCGAAAGCATTTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
71874472 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
71874512 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
71874537 AACGAGTAGC
Statistics
Matches: 162, Mismatches: 15, Indels: 14
0.85 0.08 0.07
Matches are distributed among these distances:
39 34 0.21
40 118 0.73
41 10 0.06
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:71874558 original size:119 final size:119
Alignment explanation
Indices: 71874312--71874559 Score: 290
Period size: 119 Copynumber: 2.1 Consensus size: 119
71874302 TTGAATGATG
* * *
71874312 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAAGCTTTGTGCTAAGTGACCATAACCGGACTAAGATCCGAAGGCATTT
* * **
71874377 GTGCGAGTTACTAATTCTGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAAA
66 GTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAAA
* * * *
71874431 TCCGGGTTAAGTCCCGAAAGCATTTGTGC-GAGTTACTATAACCGGGCTAAG-TCCCGAAGGCAT
1 TCCGGGTTAAGTCCCGAAAGC-TTTGTGCTAAGTGACCATAACCGGACTAAGAT-CCGAAGGCAT
* * *
71874494 TTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGCTATA
64 TTGTGCGAGTTACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACGAGTTA-CTAAA
71874551 TCC-GGTTAA
1 TCCGGGTTAA
71874560 ATTCCGAAGG
Statistics
Matches: 110, Mismatches: 14, Indels: 10
0.82 0.10 0.07
Matches are distributed among these distances:
118 3 0.03
119 76 0.69
120 31 0.28
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (119 bp):
TCCGGGTTAAGTCCCGAAAGCTTTGTGCTAAGTGACCATAACCGGACTAAGATCCGAAGGCATTT
GTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAAA
Found at i:71887291 original size:17 final size:18
Alignment explanation
Indices: 71887262--71887297 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 18
71887252 TGAATATTTG
71887262 AATTTGAATAAATCAAAT
1 AATTTGAATAAATCAAAT
*
71887280 AATTTG-ATAAATCGAAT
1 AATTTGAATAAATCAAAT
71887297 A
1 A
71887298 CAAACTATAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 11 0.65
18 6 0.35
ACGTcount: A:0.53, C:0.06, G:0.08, T:0.33
Consensus pattern (18 bp):
AATTTGAATAAATCAAAT
Found at i:71897108 original size:35 final size:35
Alignment explanation
Indices: 71897062--71897135 Score: 139
Period size: 35 Copynumber: 2.1 Consensus size: 35
71897052 GTTTTTGGCT
71897062 AAGAAAGAAAATATGGGATGTTATGCTTAGAAATG
1 AAGAAAGAAAATATGGGATGTTATGCTTAGAAATG
*
71897097 AAGAAAGAAAATATGGGATGTTATGCTTGGAAATG
1 AAGAAAGAAAATATGGGATGTTATGCTTAGAAATG
71897132 AAGA
1 AAGA
71897136 GAGGAAATGA
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 38 1.00
ACGTcount: A:0.46, C:0.03, G:0.27, T:0.24
Consensus pattern (35 bp):
AAGAAAGAAAATATGGGATGTTATGCTTAGAAATG
Found at i:71898829 original size:18 final size:18
Alignment explanation
Indices: 71898792--71898829 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 18
71898782 TAAATGATGA
71898792 ATTTTAAATATTAGTTATT
1 ATTTTAAATATTA-TTATT
71898811 ATTTTAAATTATT-TTATT
1 ATTTTAAA-TATTATTATT
71898829 A
1 A
71898830 AGTGATTTTT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
18 6 0.33
19 8 0.44
20 4 0.22
ACGTcount: A:0.37, C:0.00, G:0.03, T:0.61
Consensus pattern (18 bp):
ATTTTAAATATTATTATT
Found at i:71900814 original size:56 final size:55
Alignment explanation
Indices: 71900726--71900857 Score: 210
Period size: 56 Copynumber: 2.4 Consensus size: 55
71900716 GACCATGGCA
** * *
71900726 TCGATATATGTGAACGAGTAAGACCATGTTTTATACGTTGGCATCGATATGTGAC
1 TCGATATATGTGTGCGAGTAAGACCAAGTTTTATACGTTGGCATCAATATGTGAC
*
71900781 TTTGATATATGTGTGCGAGTAAGACCAAGTTTTATACGTTGGCATCAATATGTGAC
1 -TCGATATATGTGTGCGAGTAAGACCAAGTTTTATACGTTGGCATCAATATGTGAC
71900837 TCGATATATGTGTGCGAGTAA
1 TCGATATATGTGTGCGAGTAA
71900858 AACCCTATCT
Statistics
Matches: 70, Mismatches: 6, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
55 20 0.29
56 50 0.71
ACGTcount: A:0.29, C:0.13, G:0.24, T:0.34
Consensus pattern (55 bp):
TCGATATATGTGTGCGAGTAAGACCAAGTTTTATACGTTGGCATCAATATGTGAC
Found at i:71903275 original size:26 final size:26
Alignment explanation
Indices: 71903246--71903296 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
71903236 CCAGCACACC
*
71903246 AATATCGCAGCAAAGCTACCAGTAAT
1 AATAACGCAGCAAAGCTACCAGTAAT
* *
71903272 AATAACGCAGCATAGCTGCCAGTAA
1 AATAACGCAGCAAAGCTACCAGTAA
71903297 CAGTAAGTGT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.41, C:0.24, G:0.18, T:0.18
Consensus pattern (26 bp):
AATAACGCAGCAAAGCTACCAGTAAT
Found at i:71915007 original size:28 final size:26
Alignment explanation
Indices: 71914975--71915064 Score: 90
Period size: 29 Copynumber: 3.2 Consensus size: 26
71914965 CACATACCTG
*
71914975 TATATGGCCCACTACGCCTAATCACATT
1 TATATGGCCCA-TA-GCCAAATCACATT
71915003 TATATGGCCCATTAGTCCCAAATCACATT
1 TATATGGCCCA-TAG--CCAAATCACATT
*
71915032 TATATGGCCCATCAAGCCCAATTCACATT
1 TATATGGCCCAT--AG-CCAAATCACATT
71915061 TATA
1 TATA
71915065 GTCATGCTCA
Statistics
Matches: 55, Mismatches: 3, Indels: 7
0.85 0.05 0.11
Matches are distributed among these distances:
27 1 0.02
28 14 0.25
29 38 0.69
30 2 0.04
ACGTcount: A:0.31, C:0.29, G:0.10, T:0.30
Consensus pattern (26 bp):
TATATGGCCCATAGCCAAATCACATT
Found at i:71915033 original size:29 final size:29
Alignment explanation
Indices: 71914994--71915064 Score: 108
Period size: 29 Copynumber: 2.4 Consensus size: 29
71914984 CACTACGCCT
*
71914994 AATCACATTTATATGGCCCAT-TAGTCCCA
1 AATCACATTTATATGGCCCATCAAG-CCCA
71915023 AATCACATTTATATGGCCCATCAAGCCCA
1 AATCACATTTATATGGCCCATCAAGCCCA
*
71915052 ATTCACATTTATA
1 AATCACATTTATA
71915065 GTCATGCTCA
Statistics
Matches: 39, Mismatches: 2, Indels: 2
0.91 0.05 0.05
Matches are distributed among these distances:
29 37 0.95
30 2 0.05
ACGTcount: A:0.34, C:0.27, G:0.08, T:0.31
Consensus pattern (29 bp):
AATCACATTTATATGGCCCATCAAGCCCA
Found at i:71918847 original size:40 final size:39
Alignment explanation
Indices: 71918774--71918851 Score: 102
Period size: 40 Copynumber: 2.0 Consensus size: 39
71918764 TGCTTATCTG
**
71918774 CTAAAATGGCACTTAGTGTGCGGTTCGAAATAGCTTCGA
1 CTAAAATGGCACTTAGTGTGCAATTCGAAATAGCTTCGA
* * *
71918813 CTAAAACTGGCACTTGGTGTGCAATTTGAGATAGCTTCG
1 CTAAAA-TGGCACTTAGTGTGCAATTCGAAATAGCTTCG
71918852 GTTATATATA
Statistics
Matches: 33, Mismatches: 5, Indels: 1
0.85 0.13 0.03
Matches are distributed among these distances:
39 6 0.18
40 27 0.82
ACGTcount: A:0.27, C:0.18, G:0.26, T:0.29
Consensus pattern (39 bp):
CTAAAATGGCACTTAGTGTGCAATTCGAAATAGCTTCGA
Found at i:71918927 original size:28 final size:29
Alignment explanation
Indices: 71918870--71918938 Score: 79
Period size: 28 Copynumber: 2.4 Consensus size: 29
71918860 TATAAATGGA
* * * *
71918870 ACTTAGTGTGC-AAAGTATCGAGGATGGC
1 ACTTAGTGTGCGAAAGCATCCAGAATAGC
71918898 ACTTAGTGTGCGAAA-CATCCAGAATAGC
1 ACTTAGTGTGCGAAAGCATCCAGAATAGC
*
71918926 ACTTAGCGTGCGA
1 ACTTAGTGTGCGA
71918939 GGTATCGAGT
Statistics
Matches: 35, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
28 32 0.91
29 3 0.09
ACGTcount: A:0.30, C:0.19, G:0.28, T:0.23
Consensus pattern (29 bp):
ACTTAGTGTGCGAAAGCATCCAGAATAGC
Found at i:71940476 original size:20 final size:20
Alignment explanation
Indices: 71940445--71940499 Score: 64
Period size: 20 Copynumber: 2.9 Consensus size: 20
71940435 GATGATATTT
71940445 TATA-ATTA-TTTAATTAGA
1 TATATATTATTTTAATTAGA
*
71940463 TATATATTATTTTAATGAGA
1 TATATATTATTTTAATTAGA
71940483 TAT-T-TTATTATTAATTA
1 TATATATTATT-TTAATTA
71940500 TTTAGTATAA
Statistics
Matches: 32, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
18 9 0.28
19 11 0.34
20 12 0.38
ACGTcount: A:0.40, C:0.00, G:0.05, T:0.55
Consensus pattern (20 bp):
TATATATTATTTTAATTAGA
Found at i:71941970 original size:5 final size:5
Alignment explanation
Indices: 71941960--71941990 Score: 53
Period size: 5 Copynumber: 6.0 Consensus size: 5
71941950 AATAATTAAG
71941960 TATAT TATAT TATAT TATAT TATTAT TATAT
1 TATAT TATAT TATAT TATAT TA-TAT TATAT
71941991 ATAAAAGAAA
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
5 20 0.80
6 5 0.20
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (5 bp):
TATAT
Found at i:71942060 original size:31 final size:30
Alignment explanation
Indices: 71942025--71942085 Score: 70
Period size: 30 Copynumber: 2.0 Consensus size: 30
71942015 GAAACAGAAT
*
71942025 GAAAGCAAACGAAAC-AGAGAAGAACAGGGGA
1 GAAAG-AAACGAAACAAGA-AAGAAAAGGGGA
* *
71942056 GAAAGAAAGGAAAGAAGAAAGAAAAGGGGA
1 GAAAGAAACGAAACAAGAAAGAAAAGGGGA
71942086 AATAAGGTTT
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
30 18 0.69
31 8 0.31
ACGTcount: A:0.59, C:0.07, G:0.34, T:0.00
Consensus pattern (30 bp):
GAAAGAAACGAAACAAGAAAGAAAAGGGGA
Found at i:71962549 original size:30 final size:30
Alignment explanation
Indices: 71962515--71962574 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
71962505 TTCCCGAGCC
71962515 TAGGGGCAAAA-GTGTAATTATGCAAAAGTT
1 TAGGGGCAAAATG-GTAATTATGCAAAAGTT
* *
71962545 TAGGGGCAAAATGGTAATTTTGCCAAAGTT
1 TAGGGGCAAAATGGTAATTATGCAAAAGTT
71962575 CGTATTAAGG
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
30 26 0.96
31 1 0.04
ACGTcount: A:0.37, C:0.08, G:0.27, T:0.28
Consensus pattern (30 bp):
TAGGGGCAAAATGGTAATTATGCAAAAGTT
Found at i:71963050 original size:47 final size:47
Alignment explanation
Indices: 71962996--71963172 Score: 175
Period size: 47 Copynumber: 3.8 Consensus size: 47
71962986 TGGTTGAACA
71962996 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAAATG
* * * * * *
71963043 TCAGAACTCGTTAAGTTGAGTCTGAGTTC-GTGA--GATGT-AACTAGGTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAA--A--TG
* * *
71963090 TCCGAATTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCG-AACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAAATG
* * *
71963136 CCCGAGCTCGTTGAGTTGAGTCCAAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
71963173 GCGGGTTACA
Statistics
Matches: 103, Mismatches: 19, Indels: 17
0.74 0.14 0.12
Matches are distributed among these distances:
43 2 0.02
44 5 0.05
45 1 0.01
46 35 0.34
47 52 0.50
48 3 0.03
50 5 0.05
ACGTcount: A:0.23, C:0.18, G:0.28, T:0.31
Consensus pattern (47 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAAATG
Found at i:71963848 original size:13 final size:13
Alignment explanation
Indices: 71963830--71963861 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
71963820 TTTCCAGCAA
71963830 TTATGAATTTATT
1 TTATGAATTTATT
71963843 TTATGAATTTATT
1 TTATGAATTTATT
*
71963856 TGATGA
1 TTATGA
71963862 TGATCCAAGC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.31, C:0.00, G:0.12, T:0.56
Consensus pattern (13 bp):
TTATGAATTTATT
Found at i:71964069 original size:50 final size:50
Alignment explanation
Indices: 71963956--71964196 Score: 347
Period size: 50 Copynumber: 4.7 Consensus size: 50
71963946 ATTTGGGTAA
* * *
71963956 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCTTAAGATCATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCA-CC--GAGA-C--G
*
71964012 AGAGGTCCCCTGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
* * *
71964062 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
* *
71964112 AGAGGTCCCCTATAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
71964162 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGC
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGC
71964197 TTTGGCATGT
Statistics
Matches: 170, Mismatches: 15, Indels: 6
0.89 0.08 0.03
Matches are distributed among these distances:
50 125 0.74
52 1 0.01
53 3 0.02
55 2 0.01
56 39 0.23
ACGTcount: A:0.26, C:0.24, G:0.31, T:0.20
Consensus pattern (50 bp):
AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
Found at i:71964145 original size:100 final size:103
Alignment explanation
Indices: 71963956--71964204 Score: 405
Period size: 100 Copynumber: 2.4 Consensus size: 103
71963946 ATTTGGGTAA
*
71963956 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCTTAAGATCATGAGAGGTCCC
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCC---AGATCATGAGAGGTCCC
*
71964021 CTGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
63 CTATAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
* *
71964062 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCA-CC-GA-GATGAGAGGTCCCCTA
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCAGATCATGAGAGGTCCCCTA
71964124 TAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
66 TAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
*
71964162 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCTTTGGCAT
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCAT
71964205 GTTATTATCA
Statistics
Matches: 137, Mismatches: 5, Indels: 7
0.92 0.03 0.05
Matches are distributed among these distances:
100 93 0.68
101 2 0.01
105 2 0.01
106 40 0.29
ACGTcount: A:0.25, C:0.23, G:0.31, T:0.20
Consensus pattern (103 bp):
AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCAGATCATGAGAGGTCCCCTA
TAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
Found at i:71974224 original size:21 final size:21
Alignment explanation
Indices: 71974200--71974241 Score: 50
Period size: 22 Copynumber: 2.0 Consensus size: 21
71974190 GATATTAGAT
71974200 GAGAATTT-TTAAAAATTTTTA
1 GAGAATTTATT-AAAATTTTTA
*
71974221 GAGAGTTTAATTAAAATTTTT
1 GAGAATTT-ATTAAAATTTTT
71974242 CTAAAAACTT
Statistics
Matches: 18, Mismatches: 1, Indels: 3
0.82 0.05 0.14
Matches are distributed among these distances:
21 7 0.39
22 9 0.50
23 2 0.11
ACGTcount: A:0.40, C:0.00, G:0.12, T:0.48
Consensus pattern (21 bp):
GAGAATTTATTAAAATTTTTA
Found at i:71976855 original size:16 final size:17
Alignment explanation
Indices: 71976830--71976869 Score: 55
Period size: 16 Copynumber: 2.4 Consensus size: 17
71976820 TGAAATATTT
71976830 TATTATAAAAATAATTA
1 TATTATAAAAATAATTA
*
71976847 TATTA-AAAAATTATTA
1 TATTATAAAAATAATTA
*
71976863 AATTATA
1 TATTATA
71976870 TTAAAATATG
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
16 14 0.70
17 6 0.30
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.42
Consensus pattern (17 bp):
TATTATAAAAATAATTA
Found at i:71976867 original size:21 final size:21
Alignment explanation
Indices: 71976842--71976889 Score: 78
Period size: 21 Copynumber: 2.3 Consensus size: 21
71976832 TTATAAAAAT
*
71976842 AATTATATTAAAAAATTATTA
1 AATTATATTAAAAAATGATTA
*
71976863 AATTATATTAAAATATGATTA
1 AATTATATTAAAAAATGATTA
71976884 AATTAT
1 AATTAT
71976890 TTATTATTTT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.54, C:0.00, G:0.02, T:0.44
Consensus pattern (21 bp):
AATTATATTAAAAAATGATTA
Found at i:71976876 original size:11 final size:10
Alignment explanation
Indices: 71976842--71976912 Score: 54
Period size: 11 Copynumber: 6.8 Consensus size: 10
71976832 TTATAAAAAT
71976842 AATTATATTA
1 AATTATATTA
**
71976852 AAAAATTATTA
1 AATTA-TATTA
71976863 AATTATATTA
1 AATTATATTA
*
71976873 AAATATGATTA
1 AATTAT-ATTA
71976884 AATTAT-TTA
1 AATTATATTA
* *
71976893 TTATTTTTATTA
1 --AATTATATTA
71976905 AATTATAT
1 AATTATAT
71976913 CTAATAATAA
Statistics
Matches: 46, Mismatches: 10, Indels: 10
0.70 0.15 0.15
Matches are distributed among these distances:
9 3 0.07
10 19 0.41
11 21 0.46
12 3 0.07
ACGTcount: A:0.48, C:0.00, G:0.01, T:0.51
Consensus pattern (10 bp):
AATTATATTA
Found at i:71981959 original size:19 final size:20
Alignment explanation
Indices: 71981919--71981962 Score: 56
Period size: 19 Copynumber: 2.3 Consensus size: 20
71981909 GTTTCTTTTG
* *
71981919 GCATT-CATTTCATGCATTT
1 GCATTACATTGCATGCATAT
71981938 GCATTACATTGCAT-CATAT
1 GCATTACATTGCATGCATAT
71981957 GCATTA
1 GCATTA
71981963 GACTTTCACG
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
19 15 0.68
20 7 0.32
ACGTcount: A:0.27, C:0.20, G:0.11, T:0.41
Consensus pattern (20 bp):
GCATTACATTGCATGCATAT
Found at i:71986420 original size:88 final size:90
Alignment explanation
Indices: 71986234--71986831 Score: 448
Period size: 88 Copynumber: 6.8 Consensus size: 90
71986224 CCCGGGGCAA
* * * * * * * *
71986234 GAAGTAGATCGAAGATAGCTGATCCTATCTTCCTATATTGGTAG-GAAATGGATCAAAGAT-GCA
1 GAAGTAGATCGAAGAAAGCAGATCTTGTCTTCCTATATTGGTCGCGAAGTAGATCGAAGATAGCA
* * *
71986297 GATCTTGTCTTCCCATATTGGTGGC
66 GATCTTATCTTCCTATATTGGTAGC
* * * *
71986322 GAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGG-CGTGAAGTAGATCGAAGATAGCT
1 GAAGTAGATCGAAGAAAGCAGATCTTGTCTTCCTATATTGGTCGCGAAGTAGATCGAAGATAGCA
*
71986386 GATCCTATCTTCCTATATTGGTAG-
66 GATCTTATCTTCCTATATTGGTAGC
* * * * * * *
71986410 GAAATGGATCGAAG-ATGCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGCAGAAAGCA
1 GAAGTAGATCGAAGAAAGCAGATCTTGTCTTCCTATATTGGTCGCGAAGTAGATCGAAGATAGCA
* * * *
71986474 GATCTTATCTTCATGTATTGG-CGT
66 GATCTTATCTTCCTATATTGGTAGC
* * * ** * * *
71986498 AAAGTAGATCGAAAGATAGCAGGTCCGGTCTTCCTATATTGGTAG-GAAGTGGATCGACGAT-GC
1 GAAGTAGATCG-AAGAAAGCAGATCTTGTCTTCCTATATTGGTCGCGAAGTAGATCGAAGATAGC
* * * *
71986561 CGATCTTGTCTTCCCATATTGGTGGC
65 AGATCTTATCTTCCTATATTGGTAGC
* * ** * ** *
71986587 GAAGTAGATTGCAGAAAGCAGATCTTGTCTTTATGTATTGG-CATGAAGTAGATCGAAGGTAGCA
1 GAAGTAGATCGAAGAAAGCAGATCTTGTCTTCCTATATTGGTCGCGAAGTAGATCGAAGATAGCA
***
71986651 GATCCGGTCTTCCTATATTGGTAG-
66 GATCTTATCTTCCTATATTGGTAGC
* * * * * * * * *
71986675 GAAGTGGATTGACG-ATGCAGATCTTGTATTCCCATACTGGTGGCGAAGTAGATCGAAGAAAGCA
1 GAAGTAGATCGAAGAAAGCAGATCTTGTCTTCCTATATTGGTCGCGAAGTAGATCGAAGATAGCA
* * * *
71986739 GATCTTATCTTCATGTATTGG-CGT
66 GATCTTATCTTCCTATATTGGTAGC
** * * * * *
71986763 GAAGTAGATCGAAGATTGCAGATCTTGCCTTCCTGTATTTGG-CAGCGAAGCAGATCAAAGATGG
1 GAAGTAGATCGAAGAAAGCAGATCTTGTCTTCCTATA-TTGGTC-GCGAAGTAGATCGAAGATAG
71986827 CAGAT
64 CAGAT
71986832 TTTACCTCCC
Statistics
Matches: 390, Mismatches: 106, Indels: 26
0.75 0.20 0.05
Matches are distributed among these distances:
87 44 0.11
88 214 0.55
89 86 0.22
90 46 0.12
ACGTcount: A:0.28, C:0.16, G:0.26, T:0.29
Consensus pattern (90 bp):
GAAGTAGATCGAAGAAAGCAGATCTTGTCTTCCTATATTGGTCGCGAAGTAGATCGAAGATAGCA
GATCTTATCTTCCTATATTGGTAGC
Found at i:71986718 original size:265 final size:264
Alignment explanation
Indices: 71986235--71986786 Score: 879
Period size: 265 Copynumber: 2.1 Consensus size: 264
71986225 CCGGGGCAAG
* *
71986235 AAGTAGATCGAAGATAGCTGATCCTATCTTCCTATATTGGTAGGAAATGGATCAAAGATGCAGAT
1 AAGTAGATCGAAGATAGCAGATCCGATCTTCCTATATTGGTAGGAAATGGATCAAAGATGCAGAT
*
71986300 CTTGTCTTCCCATATTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGCG
66 CTTGTCTTCCCATATTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGCA
* *
71986365 TGAAGTAGATCGAAGATAGCTGATCCTATCTTCCTATATTGGTAGGAAATGGATCGAAGATGCAG
131 TGAAGTAGATCGAAGATAGCAGATCCGATCTTCCTATATTGGTAGGAAATGGATCGAAGATGCAG
* * *
71986430 ATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGCAGAAAGCAGATCTTATCTTCATGTATTGG
196 ATCTTGTATTCCCATACTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTATCTTCATGTATTGG
71986495 CGTA
261 CGTA
* * * * * *
71986499 AAGTAGATCGAAAGATAGCAGGTCCGGTCTTCCTATATTGGTAGGAAGTGGATCGACGATGCCGA
1 AAGTAGATCG-AAGATAGCAGATCCGATCTTCCTATATTGGTAGGAAATGGATCAAAGATGCAGA
* * *
71986564 TCTTGTCTTCCCATATTGGTGGCGAAGTAGATTGCAGAAAGCAGATCTTGTCTTTATGTATTGGC
65 TCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGC
* * * * *
71986629 ATGAAGTAGATCGAAGGTAGCAGATCCGGTCTTCCTATATTGGTAGGAAGTGGATTGACGATGCA
130 ATGAAGTAGATCGAAGATAGCAGATCCGATCTTCCTATATTGGTAGGAAATGGATCGAAGATGCA
71986694 GATCTTGTATTCCCATACTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTATCTTCATGTATTG
195 GATCTTGTATTCCCATACTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTATCTTCATGTATTG
*
71986759 GCGTG
260 GCGTA
*
71986764 AAGTAGATCGAAGATTGCAGATC
1 AAGTAGATCGAAGATAGCAGATC
71986787 TTGCCTTCCT
Statistics
Matches: 262, Mismatches: 25, Indels: 2
0.91 0.09 0.01
Matches are distributed among these distances:
264 21 0.08
265 241 0.92
ACGTcount: A:0.28, C:0.16, G:0.26, T:0.30
Consensus pattern (264 bp):
AAGTAGATCGAAGATAGCAGATCCGATCTTCCTATATTGGTAGGAAATGGATCAAAGATGCAGAT
CTTGTCTTCCCATATTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGCA
TGAAGTAGATCGAAGATAGCAGATCCGATCTTCCTATATTGGTAGGAAATGGATCGAAGATGCAG
ATCTTGTATTCCCATACTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTATCTTCATGTATTGG
CGTA
Found at i:71986795 original size:132 final size:132
Alignment explanation
Indices: 71986234--71986801 Score: 866
Period size: 132 Copynumber: 4.3 Consensus size: 132
71986224 CCCGGGGCAA
* * *
71986234 GAAGTAGATCGAAGATAGCTGATCCTATCTTCCTATATTGGTAGGAAATGGATCAAAGATGCAGA
1 GAAGTAGATCGAAGATAGCAGATCCTGTCTTCCTATATTGGTAGGAAATGGATCGAAGATGCAGA
*
71986299 TCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGC
66 TCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTATCTTCATGTATTGGC
71986364 GT
131 GT
* *
71986366 GAAGTAGATCGAAGATAGCTGATCCTATCTTCCTATATTGGTAGGAAATGGATCGAAGATGCAGA
1 GAAGTAGATCGAAGATAGCAGATCCTGTCTTCCTATATTGGTAGGAAATGGATCGAAGATGCAGA
*
71986431 TCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGCAGAAAGCAGATCTTATCTTCATGTATTGGC
66 TCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTATCTTCATGTATTGGC
71986496 GT
131 GT
* * * * * *
71986498 AAAGTAGATCGAAAGATAGCAGGTCCGGTCTTCCTATATTGGTAGGAAGTGGATCGACGATGCCG
1 GAAGTAGATCG-AAGATAGCAGATCCTGTCTTCCTATATTGGTAGGAAATGGATCGAAGATGCAG
* * * *
71986563 ATCTTGTCTTCCCATATTGGTGGCGAAGTAGATTGCAGAAAGCAGATCTTGTCTTTATGTATTGG
65 ATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTATCTTCATGTATTGG
*
71986628 CAT
130 CGT
* * * * *
71986631 GAAGTAGATCGAAGGTAGCAGATCCGGTCTTCCTATATTGGTAGGAAGTGGATTGACGATGCAGA
1 GAAGTAGATCGAAGATAGCAGATCCTGTCTTCCTATATTGGTAGGAAATGGATCGAAGATGCAGA
* *
71986696 TCTTGTATTCCCATACTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTATCTTCATGTATTGGC
66 TCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTATCTTCATGTATTGGC
71986761 GT
131 GT
* * * *
71986763 GAAGTAGATCGAAGATTGCAGATCTTGCCTTCCTGTATT
1 GAAGTAGATCGAAGATAGCAGATCCTGTCTTCCTATATT
71986802 TGGCAGCGAA
Statistics
Matches: 402, Mismatches: 33, Indels: 2
0.92 0.08 0.00
Matches are distributed among these distances:
132 282 0.70
133 120 0.30
ACGTcount: A:0.27, C:0.16, G:0.26, T:0.30
Consensus pattern (132 bp):
GAAGTAGATCGAAGATAGCAGATCCTGTCTTCCTATATTGGTAGGAAATGGATCGAAGATGCAGA
TCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTATCTTCATGTATTGGC
GT
Found at i:71987333 original size:136 final size:134
Alignment explanation
Indices: 71986752--71988037 Score: 2139
Period size: 136 Copynumber: 9.6 Consensus size: 134
71986742 CTTATCTTCA
* *
71986752 TGTAT-TGGC-GT-GAAGTAGATCGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGC
1 TGTATCTGGCAGTGGAA-TAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTAGGCAGCGAAGC
* ** *
71986814 AGATCAAAGATGGCAGATTTTACCTCCCTGACCCCAGTGGAGTACATTGAAGCCGATAACTCTAT
65 AGATCGAAGATGGCAGATTTTACCTCCCTGACTACAGTAGAGTACATTGAAGCCGATAACTCTAT
71986879 CTCCC
130 CTCCC
* *
71986884 TGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCA
1 TGTATCTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTAGGCAGCGAAGCA
* * * *
71986949 TATCAAAGATGGCAGATTTTACCTCCCTGACCACAGTGGAGTACATTGAAGCCGATAACTCTATC
66 GATCGAAGATGGCAGATTTTACCTCCCTGACTACAGTAGAGTACATTGAAGCCGATAACTCTATC
71987014 TCCC
131 TCCC
* *
71987018 TGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCA
1 TGTATCTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTAGGCAGCGAAGCA
* * * * *
71987083 GATCAAAAGATGGCAGATTTTACCTCCCTGACCACAGTGGAGTACACTGAAGCCGATAATTCTAT
66 GATC-GAAGATGGCAGATTTTACCTCCCTGACTACAGTAGAGTACATTGAAGCCGATAACTCTAT
71987148 CTCCC
130 CTCCC
*
71987153 TGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTAGGCAGCGAAGCA
1 TGTATCTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTAGGCAGCGAAGCA
*
71987218 GATCGAAGATGGCAGATTTTACCTCACTGTGACTACAGTAGAGTACATTGAAGCCGATAACTCTA
66 GATCGAAGATGGCAGATTTTACCTC-C-CTGACTACAGTAGAGTACATTGAAGCCGATAACTCTA
71987283 TCTCCC
129 TCTCCC
71987289 TGTATCTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTAGGCAGCGAAGCA
1 TGTATCTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTAGGCAGCGAAGCA
*
71987354 GATCGAAGATGGCAGATTTTACCTCACTGTGACTACAGTAGAGTACATTGAAGCCGATAACTCTA
66 GATCGAAGATGGCAGATTTTACCTC-C-CTGACTACAGTAGAGTACATTGAAGCCGATAACTCTA
71987419 TCTCCC
129 TCTCCC
71987425 TGTATCTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTAGGCAGCGAAGCA
1 TGTATCTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTAGGCAGCGAAGCA
*
71987490 GATCGAAGATGGCAGATTTTACCTCACTGTGACTACAGTAGAGTACATTGAAGCCGATAACTCTA
66 GATCGAAGATGGCAGATTTTACCTC-C-CTGACTACAGTAGAGTACATTGAAGCCGATAACTCTA
71987555 TCTCCC
129 TCTCCC
*
71987561 TGTATCTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCA
1 TGTATCTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTAGGCAGCGAAGCA
* *
71987626 GATCAAAGATGGCAGATTTTACCTCCCTGACTACAGGAGAGTACATTGAAGCCGATAACTCTATC
66 GATCGAAGATGGCAGATTTTACCTCCCTGACTACAGTAGAGTACATTGAAGCCGATAACTCTATC
71987691 TCCC
131 TCCC
*
71987695 TGTATCTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCA
1 TGTATCTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTAGGCAGCGAAGCA
* * *
71987760 GATCGAAGATGGCAGATTTTACCTCCCTGACTACAGTGGTGTACATTGAAGCCGATAACTTTATC
66 GATCGAAGATGGCAGATTTTACCTCCCTGACTACAGTAGAGTACATTGAAGCCGATAACTCTATC
71987825 TCCC
131 TCCC
71987829 TGTATCTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTAGGCAGCGAAGCA
1 TGTATCTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTAGGCAGCGAAGCA
*
71987894 GATCGAAGATGGCAGATTTTACCTCACTGTGACTACAGTAGAGTACATTGAAGCCGATAACTCTA
66 GATCGAAGATGGCAGATTTTACCTC-C-CTGACTACAGTAGAGTACATTGAAGCCGATAACTCTA
71987959 TCTCCC
129 TCTCCC
* * *
71987965 TGTATCTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCTTGTATTAGGTAG-GAAGTA
1 TGTATCTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTAGGCAGCGAAGCA
*
71988029 GACCGAAGA
66 GATCGAAGA
71988038 AAGCAGATCT
Statistics
Matches: 1114, Mismatches: 32, Indels: 13
0.96 0.03 0.01
Matches are distributed among these distances:
132 5 0.00
133 4 0.00
134 463 0.42
135 150 0.13
136 492 0.44
ACGTcount: A:0.27, C:0.21, G:0.24, T:0.28
Consensus pattern (134 bp):
TGTATCTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTAGGCAGCGAAGCA
GATCGAAGATGGCAGATTTTACCTCCCTGACTACAGTAGAGTACATTGAAGCCGATAACTCTATC
TCCC
Found at i:71988087 original size:44 final size:44
Alignment explanation
Indices: 71987963--71988399 Score: 248
Period size: 44 Copynumber: 9.8 Consensus size: 44
71987953 ACTCTATCTC
* * *
71987963 CCTGTATCTGGCAGTGGAA-TAGATTGAAGATTGCAGATCTTGCCTT
1 CCTGTAT-TGGC-GT-GAAGTAGATCGAAGATAGCAGATCTTGTCTT
* * * *
71988009 CTTGTATTAG-GTAGGAAGTAGACCGAAGAAAGCAGATCTTGTCTT
1 CCTGTATTGGCGT--GAAGTAGATCGAAGATAGCAGATCTTGTCTT
* * **
71988054 CATGTATTGGCGTGAAGTAGATCGAAGATAGCAGGTCCGGTCTT
1 CCTGTATTGGCGTGAAGTAGATCGAAGATAGCAGATCTTGTCTT
* * * *
71988098 CCTATATTGGTAG-GAAGTGGATCGACGAT-GCAGATCTTGT-TT
1 CCTGTATTGG-CGTGAAGTAGATCGAAGATAGCAGATCTTGTCTT
** * * * *
71988140 ACCCATATTGGTGGCGAAGTAGATCGCAGAAAGCAGATCTTGTCTT
1 -CCTGTATTGG-CGTGAAGTAGATCGAAGATAGCAGATCTTGTCTT
* * * * *
71988186 CATCTATTGGCGTGAAGTAGATCGAAGATAGCAGGTCCTATCTT
1 CCTGTATTGGCGTGAAGTAGATCGAAGATAGCAGATCTTGTCTT
* * * *
71988230 CCTATATT-G-ATAGAAAGTGGATCCAAGATA-CAGATCTTGTCTT
1 CCTGTATTGGCGT-G-AAGTAGATCGAAGATAGCAGATCTTGTCTT
** * * *
71988273 CCCATACTGGTGGTGAAGTAGATCGAAGAAAGCAGATCTTGTC--
1 CCTGTATTGG-CGTGAAGTAGATCGAAGATAGCAGATCTTGTCTT
* * * * *
71988316 CCTGTATTTGACAGTGGAA-TAGATTGAGGATTGCAGATCTTGCCTT
1 CCTGTA-TTGGC-GT-GAAGTAGATCGAAGATAGCAGATCTTGTCTT
* * * * *
71988362 CATGTATTGGGCAGCGAAGCAGATCGACGATGGCAGAT
1 CCTGTATT-GGC-GTGAAGTAGATCGAAGATAGCAGAT
71988400 TTTACCTCCC
Statistics
Matches: 301, Mismatches: 69, Indels: 42
0.73 0.17 0.10
Matches are distributed among these distances:
42 3 0.01
43 43 0.14
44 149 0.50
45 71 0.24
46 35 0.12
ACGTcount: A:0.27, C:0.17, G:0.27, T:0.29
Consensus pattern (44 bp):
CCTGTATTGGCGTGAAGTAGATCGAAGATAGCAGATCTTGTCTT
Found at i:71988231 original size:132 final size:132
Alignment explanation
Indices: 71988023--71988315 Score: 462
Period size: 132 Copynumber: 2.2 Consensus size: 132
71988013 TATTAGGTAG
* *
71988023 GAAGTAGACCGAAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGCAG
1 GAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATCTATTGGCGTGAAGTAGATCGAAGATAGCAG
* * * * * * *
71988088 GTCCGGTCTTCCTATATTGGTAGGAAGTGGATCGACGATGCAGATCTTGT-TTACCCATATTGGT
66 GTCCGATCTTCCTATATTGATAGAAAGTGGATCCAAGATACAGATCTTGTCTT-CCCATACTGGT
71988152 GGC
130 GGC
*
71988155 GAAGTAGATCGCAGAAAGCAGATCTTGTCTTCATCTATTGGCGTGAAGTAGATCGAAGATAGCAG
1 GAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATCTATTGGCGTGAAGTAGATCGAAGATAGCAG
*
71988220 GTCCTATCTTCCTATATTGATAGAAAGTGGATCCAAGATACAGATCTTGTCTTCCCATACTGGTG
66 GTCCGATCTTCCTATATTGATAGAAAGTGGATCCAAGATACAGATCTTGTCTTCCCATACTGGTG
*
71988285 GT
131 GC
71988287 GAAGTAGATCGAAGAAAGCAGATCTTGTC
1 GAAGTAGATCGAAGAAAGCAGATCTTGTC
71988316 CCTGTATTTG
Statistics
Matches: 147, Mismatches: 13, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
132 145 0.99
133 2 0.01
ACGTcount: A:0.29, C:0.17, G:0.26, T:0.28
Consensus pattern (132 bp):
GAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATCTATTGGCGTGAAGTAGATCGAAGATAGCAG
GTCCGATCTTCCTATATTGATAGAAAGTGGATCCAAGATACAGATCTTGTCTTCCCATACTGGTG
GC
Found at i:71988536 original size:40 final size:40
Alignment explanation
Indices: 71988487--71988799 Score: 294
Period size: 40 Copynumber: 7.7 Consensus size: 40
71988477 AAACCACAGA
*
71988487 TCTTATCTCCCTAAGCAATAGTGGAGCGGATCGTATCAAG
1 TCTTATCTCCCTAAGCAATAGTGGAGCGGATCGAATCAAG
* * * *
71988527 TCTTATCTCCCTAAGTAGTAGCGGAGCGGA-CAAAATCACAG
1 TCTTATCTCCCTAAGCAATAGTGGAGCGGATC-GAATCA-AG
* *
71988568 ATCTTATCTCCCTAAGCAATAGTGTAGCGGATCGCATCAAG
1 -TCTTATCTCCCTAAGCAATAGTGGAGCGGATCGAATCAAG
* * * *
71988609 TCTTATCTCCCTAAGCAGTAGCGGAGCGGA-CAAAACCACAG
1 TCTTATCTCCCTAAGCAATAGTGGAGCGGATC-GAATCA-AG
* **
71988650 ATCTTATCTCCCTAAGCAATAGTGGAGCAGATCGCTTCAAG
1 -TCTTATCTCCCTAAGCAATAGTGGAGCGGATCGAATCAAG
* * *
71988691 TCTTATCTCCCCAAGCAATAGTGGAGCAGA-CAGAACCACAG
1 TCTTATCTCCCTAAGCAATAGTGGAGCGGATC-GAATCA-AG
* ** *
71988732 ATCTTAT-TCCCCTAAGCAGTAGTGGAGTAGATC-ACATCCAG
1 -TCTTATCT-CCCTAAGCAATAGTGGAGCGGATCGA-ATCAAG
*
71988773 TCTTATCTCCCTAAGCAGTAGTGGAGC
1 TCTTATCTCCCTAAGCAATAGTGGAGC
71988800 AGACTAAAAC
Statistics
Matches: 224, Mismatches: 34, Indels: 30
0.78 0.12 0.10
Matches are distributed among these distances:
39 3 0.01
40 117 0.52
41 15 0.07
42 86 0.38
43 3 0.01
ACGTcount: A:0.30, C:0.26, G:0.21, T:0.24
Consensus pattern (40 bp):
TCTTATCTCCCTAAGCAATAGTGGAGCGGATCGAATCAAG
Found at i:71988825 original size:82 final size:82
Alignment explanation
Indices: 71988476--71988818 Score: 490
Period size: 82 Copynumber: 4.2 Consensus size: 82
71988466 GAATAGAGTG
* *
71988476 AAAACCACAGATCTTATCTCCCTAAGCAATAGTGGAGCGGATCGTATCAAGTCTTATCTCCCTAA
1 AAAACCACAGATCTTATCTCCCTAAGCAATAGTGGAGCAGATCGCATCAAGTCTTATCTCCCTAA
* *
71988541 GTAGTAGCGGAGCGGAC
66 GCAGTAGCGGAGCAGAC
* * *
71988558 AAAATCACAGATCTTATCTCCCTAAGCAATAGTGTAGCGGATCGCATCAAGTCTTATCTCCCTAA
1 AAAACCACAGATCTTATCTCCCTAAGCAATAGTGGAGCAGATCGCATCAAGTCTTATCTCCCTAA
*
71988623 GCAGTAGCGGAGCGGAC
66 GCAGTAGCGGAGCAGAC
* *
71988640 AAAACCACAGATCTTATCTCCCTAAGCAATAGTGGAGCAGATCGCTTCAAGTCTTATCTCCCCAA
1 AAAACCACAGATCTTATCTCCCTAAGCAATAGTGGAGCAGATCGCATCAAGTCTTATCTCCCTAA
* *
71988705 GCAATAGTGGAGCAGAC
66 GCAGTAGCGGAGCAGAC
* * * * *
71988722 AGAACCACAGATCTTAT-TCCCCTAAGCAGTAGTGGAGTAGATCACATCCAGTCTTATCTCCCTA
1 AAAACCACAGATCTTATCT-CCCTAAGCAATAGTGGAGCAGATCGCATCAAGTCTTATCTCCCTA
*
71988786 AGCAGTAGTGGAGCAGAC
65 AGCAGTAGCGGAGCAGAC
*
71988804 TAAAACCACAAATCT
1 -AAAACCACAGATCT
71988819 CATCCCCATG
Statistics
Matches: 237, Mismatches: 22, Indels: 3
0.90 0.08 0.01
Matches are distributed among these distances:
81 1 0.00
82 224 0.95
83 12 0.05
ACGTcount: A:0.32, C:0.26, G:0.20, T:0.23
Consensus pattern (82 bp):
AAAACCACAGATCTTATCTCCCTAAGCAATAGTGGAGCAGATCGCATCAAGTCTTATCTCCCTAA
GCAGTAGCGGAGCAGAC
Found at i:71992498 original size:15 final size:15
Alignment explanation
Indices: 71992478--71992508 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
71992468 TACCGATGTA
71992478 AGTCTGTTAGCAGTT
1 AGTCTGTTAGCAGTT
71992493 AGTCTGTTAGCAGTT
1 AGTCTGTTAGCAGTT
71992508 A
1 A
71992509 AATATGATAG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.23, C:0.13, G:0.26, T:0.39
Consensus pattern (15 bp):
AGTCTGTTAGCAGTT
Found at i:71995684 original size:20 final size:20
Alignment explanation
Indices: 71995645--71995686 Score: 66
Period size: 20 Copynumber: 2.1 Consensus size: 20
71995635 ATGTTAGAGT
*
71995645 TAATATAGTCAAAGCAGTTG
1 TAATATAGTCAAAACAGTTG
*
71995665 TAATATAGTCAAAACCGTTG
1 TAATATAGTCAAAACAGTTG
71995685 TA
1 TA
71995687 CCGATGTAAG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.40, C:0.12, G:0.17, T:0.31
Consensus pattern (20 bp):
TAATATAGTCAAAACAGTTG
Found at i:71995715 original size:15 final size:15
Alignment explanation
Indices: 71995695--71995725 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
71995685 TACCGATGTA
71995695 AGTCTGTTAGCAGTT
1 AGTCTGTTAGCAGTT
71995710 AGTCTGTTAGCAGTT
1 AGTCTGTTAGCAGTT
71995725 A
1 A
71995726 AAGATGATAG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.23, C:0.13, G:0.26, T:0.39
Consensus pattern (15 bp):
AGTCTGTTAGCAGTT
Found at i:71999334 original size:19 final size:19
Alignment explanation
Indices: 71999310--71999347 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
71999300 GGGAAAAAAC
71999310 TGATTCAATGTGTTCCTTT
1 TGATTCAATGTGTTCCTTT
71999329 TGATTCAATGTGTTCCTTT
1 TGATTCAATGTGTTCCTTT
71999348 ATCAAAGGAG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.16, C:0.16, G:0.16, T:0.53
Consensus pattern (19 bp):
TGATTCAATGTGTTCCTTT
Found at i:72010419 original size:2 final size:2
Alignment explanation
Indices: 72010412--72010442 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
72010402 TTCCCCTCCC
72010412 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT C
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT C
72010443 GTTTAAGCCT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.00, C:0.52, G:0.00, T:0.48
Consensus pattern (2 bp):
CT
Found at i:72017257 original size:17 final size:17
Alignment explanation
Indices: 72017235--72017267 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
72017225 ATTACTTATT
72017235 TATT-AATTAATTTTTCC
1 TATTAAATT-ATTTTTCC
72017252 TATTAAATTATTTTTC
1 TATTAAATTATTTTTC
72017268 TCAAACTAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
17 11 0.73
18 4 0.27
ACGTcount: A:0.30, C:0.09, G:0.00, T:0.61
Consensus pattern (17 bp):
TATTAAATTATTTTTCC
Found at i:72018522 original size:20 final size:22
Alignment explanation
Indices: 72018482--72018532 Score: 61
Period size: 20 Copynumber: 2.4 Consensus size: 22
72018472 ATTTTTAGAT
72018482 TTTAATTATGTAAATATATATAA
1 TTTAATTA-GTAAATATATATAA
*
72018505 TTTAATTA-TAAA-ATATATTA
1 TTTAATTAGTAAATATATATAA
*
72018525 TTAAATTA
1 TTTAATTA
72018533 ATTAATTATA
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
20 14 0.54
21 4 0.15
23 8 0.31
ACGTcount: A:0.49, C:0.00, G:0.02, T:0.49
Consensus pattern (22 bp):
TTTAATTAGTAAATATATATAA
Found at i:72018522 original size:24 final size:23
Alignment explanation
Indices: 72018482--72018554 Score: 58
Period size: 23 Copynumber: 3.0 Consensus size: 23
72018472 ATTTTTAGAT
**
72018482 TTTAATTATGTAAATA-TATATAA
1 TTTAATTATAAAAATATTAT-TAA
72018505 TTTAATTATAAAATATATTATTAAA
1 TTTAATTATAAAA-ATATTATT-AA
*
72018530 TTAATTAATTATAAATATATTATTA
1 -T--TTAATTATAAAAATATTATTA
72018555 TGAATTAAAT
Statistics
Matches: 41, Mismatches: 3, Indels: 9
0.77 0.06 0.17
Matches are distributed among these distances:
23 11 0.27
24 4 0.10
25 5 0.12
26 2 0.05
27 8 0.20
28 11 0.27
ACGTcount: A:0.49, C:0.00, G:0.01, T:0.49
Consensus pattern (23 bp):
TTTAATTATAAAAATATTATTAA
Found at i:72018856 original size:13 final size:14
Alignment explanation
Indices: 72018838--72018884 Score: 53
Period size: 13 Copynumber: 3.5 Consensus size: 14
72018828 TTATTAGGTT
72018838 AATAAAATAAAAG-
1 AATAAAATAAAAGA
* *
72018851 AATAAAAGAAATGA
1 AATAAAATAAAAGA
72018865 AATAAAAT-AAAGA
1 AATAAAATAAAAGA
*
72018878 AACAAAA
1 AATAAAA
72018885 CAAAGTAAAG
Statistics
Matches: 28, Mismatches: 5, Indels: 2
0.80 0.14 0.06
Matches are distributed among these distances:
13 21 0.75
14 7 0.25
ACGTcount: A:0.77, C:0.02, G:0.09, T:0.13
Consensus pattern (14 bp):
AATAAAATAAAAGA
Found at i:72020734 original size:16 final size:16
Alignment explanation
Indices: 72020701--72020734 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
72020691 ATAGGATGTT
* *
72020701 AACATTAATGGGAGAC
1 AACATTAATGGCAAAC
72020717 AACATTAATGGCAAAC
1 AACATTAATGGCAAAC
72020733 AA
1 AA
72020735 TACAAAGTGG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.50, C:0.15, G:0.18, T:0.18
Consensus pattern (16 bp):
AACATTAATGGCAAAC
Found at i:72023555 original size:21 final size:21
Alignment explanation
Indices: 72023531--72023571 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
72023521 AGCCGAGCAA
* *
72023531 TACTCCACAGCAGGTGGAGTG
1 TACTCCAAAACAGGTGGAGTG
72023552 TACTCCAAAACAGGTGGAGT
1 TACTCCAAAACAGGTGGAGT
72023572 TTGAGCAGAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.29, C:0.22, G:0.29, T:0.20
Consensus pattern (21 bp):
TACTCCAAAACAGGTGGAGTG
Found at i:72025510 original size:16 final size:16
Alignment explanation
Indices: 72025477--72025510 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
72025467 GGAGATTGTT
* *
72025477 AACATTAATGGGAGAC
1 AACATTAATGGCAAAC
72025493 AACATTAATGGCAAAC
1 AACATTAATGGCAAAC
72025509 AA
1 AA
72025511 TACAAAGTGG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.50, C:0.15, G:0.18, T:0.18
Consensus pattern (16 bp):
AACATTAATGGCAAAC
Found at i:72026175 original size:45 final size:45
Alignment explanation
Indices: 72026104--72026210 Score: 162
Period size: 45 Copynumber: 2.4 Consensus size: 45
72026094 CTGTTACTGT
* *
72026104 TACTGTTACCGTTACAGTTATCGATTCAACACTTTGTGTGTCGAA
1 TACTGTTACTGTTACTGTTATCGATTCAACACTTTGTGTGTCGAA
* *
72026149 TACTGTTACTGTTACTGTTA-CAGATTCAGCACTTTGTGTGTTGAA
1 TACTGTTACTGTTACTGTTATC-GATTCAACACTTTGTGTGTCGAA
72026194 TACTGTTACTGTTACTG
1 TACTGTTACTGTTACTG
72026211 CTACCGTTGC
Statistics
Matches: 57, Mismatches: 4, Indels: 2
0.90 0.06 0.03
Matches are distributed among these distances:
44 1 0.02
45 56 0.98
ACGTcount: A:0.22, C:0.18, G:0.19, T:0.41
Consensus pattern (45 bp):
TACTGTTACTGTTACTGTTATCGATTCAACACTTTGTGTGTCGAA
Found at i:72030107 original size:35 final size:36
Alignment explanation
Indices: 72030063--72030154 Score: 118
Period size: 36 Copynumber: 2.6 Consensus size: 36
72030053 TATTACGATG
* *
72030063 GAAAGATTATTTGGTCATCTTA-ATTGGATTGGTTT
1 GAAAAATTATTTGGTCATCTTATAATGGATTGGTTT
72030098 GAAAAATTA-TTGAGTCAT-TATATAATGGATTGGTTT
1 GAAAAATTATTTG-GTCATCT-TATAATGGATTGGTTT
*
72030134 GAAAAACTATTTGGTCATCTT
1 GAAAAATTATTTGGTCATCTT
72030155 GTTAATTGAG
Statistics
Matches: 49, Mismatches: 3, Indels: 9
0.80 0.05 0.15
Matches are distributed among these distances:
34 4 0.08
35 15 0.31
36 26 0.53
37 4 0.08
ACGTcount: A:0.32, C:0.07, G:0.20, T:0.42
Consensus pattern (36 bp):
GAAAAATTATTTGGTCATCTTATAATGGATTGGTTT
Found at i:72038389 original size:31 final size:30
Alignment explanation
Indices: 72038354--72038412 Score: 77
Period size: 31 Copynumber: 1.9 Consensus size: 30
72038344 GAAAGCATAT
72038354 TTTAGA-ATATTAATATATTTCTA-TAATTAAA
1 TTTAGATA-ATTAATAT-TTT-TATTAATTAAA
72038385 TTTAGATAATTAATATTTTTATTAATTA
1 TTTAGATAATTAATATTTTTATTAATTA
72038413 GATGATGATC
Statistics
Matches: 26, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
29 2 0.08
30 9 0.35
31 14 0.54
32 1 0.04
ACGTcount: A:0.42, C:0.02, G:0.03, T:0.53
Consensus pattern (30 bp):
TTTAGATAATTAATATTTTTATTAATTAAA
Found at i:72040274 original size:16 final size:17
Alignment explanation
Indices: 72040242--72040279 Score: 58
Period size: 17 Copynumber: 2.2 Consensus size: 17
72040232 CAAAAGGAAA
*
72040242 TTATTTTGGTATTTTTT
1 TTATTTTGATATTTTTT
*
72040259 TTATTTTGATTTTTTTT
1 TTATTTTGATATTTTTT
72040276 TTAT
1 TTAT
72040280 ATTTTAGTCA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.13, C:0.00, G:0.08, T:0.79
Consensus pattern (17 bp):
TTATTTTGATATTTTTT
Found at i:72047334 original size:30 final size:30
Alignment explanation
Indices: 72047298--72047360 Score: 99
Period size: 30 Copynumber: 2.1 Consensus size: 30
72047288 ACTTAATAAG
*
72047298 CAAATGTCTCTAAAATAATAACAAAATTAA
1 CAAATGTCTATAAAATAATAACAAAATTAA
* *
72047328 CAAATGTCTATCAAATAATAACAAAATTGA
1 CAAATGTCTATAAAATAATAACAAAATTAA
72047358 CAA
1 CAA
72047361 TAAAATAAGT
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.56, C:0.14, G:0.05, T:0.25
Consensus pattern (30 bp):
CAAATGTCTATAAAATAATAACAAAATTAA
Found at i:72051517 original size:27 final size:27
Alignment explanation
Indices: 72051462--72051524 Score: 74
Period size: 27 Copynumber: 2.3 Consensus size: 27
72051452 TATGGATTTA
72051462 TTTATATTTGTGTAAATTTTAAATAAT
1 TTTATATTTGTGTAAATTTTAAATAAT
* * *
72051489 TTTATATTATTTGTAATTTTTACAT-AT
1 TTTATATT-TGTGTAAATTTTAAATAAT
*
72051516 TTAATATTT
1 TTTATATTT
72051525 TAATAATTAA
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
26 1 0.03
27 17 0.55
28 13 0.42
ACGTcount: A:0.33, C:0.02, G:0.05, T:0.60
Consensus pattern (27 bp):
TTTATATTTGTGTAAATTTTAAATAAT
Found at i:72058943 original size:21 final size:21
Alignment explanation
Indices: 72058919--72058960 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
72058909 AGAAAGTGCG
72058919 AGTATAGATGGTGTAATTAAC
1 AGTATAGATGGTGTAATTAAC
72058940 AGTATAGATGGTGTAATTAAC
1 AGTATAGATGGTGTAATTAAC
72058961 CCAAATCCTG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.38, C:0.05, G:0.24, T:0.33
Consensus pattern (21 bp):
AGTATAGATGGTGTAATTAAC
Found at i:72063478 original size:6 final size:6
Alignment explanation
Indices: 72063453--72063490 Score: 51
Period size: 6 Copynumber: 6.3 Consensus size: 6
72063443 ATCTCAAATG
*
72063453 ATAAAA A-AAAA GACAAAA ATAAAA ATAAAA ATAAAA AT
1 ATAAAA ATAAAA -ATAAAA ATAAAA ATAAAA ATAAAA AT
72063491 TAGAGAATAA
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
5 4 0.14
6 21 0.72
7 4 0.14
ACGTcount: A:0.82, C:0.03, G:0.03, T:0.13
Consensus pattern (6 bp):
ATAAAA
Found at i:72064051 original size:22 final size:22
Alignment explanation
Indices: 72064008--72064051 Score: 52
Period size: 22 Copynumber: 2.0 Consensus size: 22
72063998 AATTTTACAA
* *
72064008 ATTTTATTTATGTATTGGATTT
1 ATTTTATTTATGTAATAGATTT
* *
72064030 ATTTTATTTTTGTAATATATTT
1 ATTTTATTTATGTAATAGATTT
72064052 GTGTTTGGAT
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.25, C:0.00, G:0.09, T:0.66
Consensus pattern (22 bp):
ATTTTATTTATGTAATAGATTT
Done.