Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr9
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 91122320
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2661692 characters in sequence are not A, C, G, or T
File 22 of 279
Found at i:7118735 original size:28 final size:28
Alignment explanation
Indices: 7118682--7118747 Score: 82
Period size: 28 Copynumber: 2.4 Consensus size: 28
7118672 CCATCACAGA
* *
7118682 AACAGTATCAGGTGGGCCTTAACCCATT
1 AACAGAATCAGGTGGGCCTTAACCCAAT
*
7118710 AACAGAATTAGGTGGGCC-TAAGCCCAAT
1 AACAGAATCAGGTGGGCCTTAA-CCCAAT
7118738 -ACAGAATCAG
1 AACAGAATCAG
7118748 TATCAAATGC
Statistics
Matches: 33, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
27 12 0.36
28 21 0.64
ACGTcount: A:0.35, C:0.23, G:0.23, T:0.20
Consensus pattern (28 bp):
AACAGAATCAGGTGGGCCTTAACCCAAT
Found at i:7119196 original size:27 final size:26
Alignment explanation
Indices: 7119165--7119222 Score: 73
Period size: 27 Copynumber: 2.2 Consensus size: 26
7119155 GGCATAATCA
7119165 TCATTCTA-CCATACAGGGGTATTACGG
1 TCATTCTATCC-TACAGGGGTATTA-GG
* *
7119192 TCATTTTATCCTATAGGGGTATTAGG
1 TCATTCTATCCTACAGGGGTATTAGG
7119218 TCATT
1 TCATT
7119223 TTACAAACTA
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
26 7 0.25
27 19 0.68
28 2 0.07
ACGTcount: A:0.24, C:0.17, G:0.21, T:0.38
Consensus pattern (26 bp):
TCATTCTATCCTACAGGGGTATTAGG
Found at i:7119238 original size:26 final size:27
Alignment explanation
Indices: 7119182--7119245 Score: 69
Period size: 26 Copynumber: 2.4 Consensus size: 27
7119172 ACCATACAGG
** *
7119182 GGTATTACGGTCATTTTATCCTATAGG
1 GGTATTACGGTCATTTTATCAAATAGA
7119209 GGTATTA-GGTCATTTTA-CAAACTAGA
1 GGTATTACGGTCATTTTATCAAA-TAGA
*
7119235 GGTATTTCGGT
1 GGTATTACGGT
7119246 ACTTATTACG
Statistics
Matches: 31, Mismatches: 4, Indels: 4
0.79 0.10 0.10
Matches are distributed among these distances:
25 2 0.06
26 19 0.61
27 10 0.32
ACGTcount: A:0.25, C:0.12, G:0.23, T:0.39
Consensus pattern (27 bp):
GGTATTACGGTCATTTTATCAAATAGA
Found at i:7124011 original size:27 final size:26
Alignment explanation
Indices: 7123938--7124015 Score: 68
Period size: 27 Copynumber: 2.9 Consensus size: 26
7123928 GGGCATAATC
* *
7123938 GTCATTCTACAATAC-AGAGGTACTACG
1 GTCATTTTACAA-ACGAG-GGTATTACG
** *
7123965 GTCATTTTACCCTACAAGGGTATTACG
1 GTCATTTTA-CAAACGAGGGTATTACG
7123992 GTCATTTTACAAACTGAGGGTATT
1 GTCATTTTACAAAC-GAGGGTATT
7124016 TCAATACTTA
Statistics
Matches: 41, Mismatches: 7, Indels: 6
0.76 0.13 0.11
Matches are distributed among these distances:
26 3 0.07
27 35 0.85
28 3 0.07
ACGTcount: A:0.29, C:0.19, G:0.19, T:0.32
Consensus pattern (26 bp):
GTCATTTTACAAACGAGGGTATTACG
Found at i:7125069 original size:18 final size:19
Alignment explanation
Indices: 7125039--7125074 Score: 65
Period size: 18 Copynumber: 1.9 Consensus size: 19
7125029 CGGCTTCTTT
7125039 AAAGAGAAAAGAAGTAATG
1 AAAGAGAAAAGAAGTAATG
7125058 AAAGAG-AAAGAAGTAAT
1 AAAGAGAAAAGAAGTAAT
7125075 TGTGTTCATC
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
18 11 0.65
19 6 0.35
ACGTcount: A:0.64, C:0.00, G:0.25, T:0.11
Consensus pattern (19 bp):
AAAGAGAAAAGAAGTAATG
Found at i:7131286 original size:40 final size:40
Alignment explanation
Indices: 7131238--7131403 Score: 307
Period size: 40 Copynumber: 4.2 Consensus size: 40
7131228 GGACTAAGAT
7131238 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
7131278 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
7131318 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
* *
7131358 CCGAAGGCATTTGTGCGAGTTGCTATATCC-GGCTAAATC
1 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
7131397 CCGAAGG
1 CCGAAGG
7131404 TACTTGGGTT
Statistics
Matches: 124, Mismatches: 2, Indels: 1
0.98 0.02 0.01
Matches are distributed among these distances:
39 15 0.12
40 109 0.88
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.27
Consensus pattern (40 bp):
CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
Found at i:7132469 original size:74 final size:74
Alignment explanation
Indices: 7132348--7132492 Score: 272
Period size: 74 Copynumber: 2.0 Consensus size: 74
7132338 AGAGACAATT
*
7132348 AGAAGTCATGATTTATATGTATGGATTCCTTTTTGAGTCTAGTTTCATTAGAAACAAACGGCATA
1 AGAAGTCATGATTTATATGTATGGATTCCTTTTTGAGTCTAGATTCATTAGAAACAAACGGCATA
7132413 AGTATTGAA
66 AGTATTGAA
*
7132422 AGAAGTCATGATTTATATGTATGGATTCCTTTTTGAGTCTAGATTCATTATAAACAAACGGCATA
1 AGAAGTCATGATTTATATGTATGGATTCCTTTTTGAGTCTAGATTCATTAGAAACAAACGGCATA
7132487 AGTATT
66 AGTATT
7132493 TAAGCTCTGT
Statistics
Matches: 69, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
74 69 1.00
ACGTcount: A:0.34, C:0.11, G:0.18, T:0.37
Consensus pattern (74 bp):
AGAAGTCATGATTTATATGTATGGATTCCTTTTTGAGTCTAGATTCATTAGAAACAAACGGCATA
AGTATTGAA
Found at i:7140184 original size:23 final size:22
Alignment explanation
Indices: 7140136--7140182 Score: 94
Period size: 22 Copynumber: 2.1 Consensus size: 22
7140126 TAAAGTGCAC
7140136 TTTATTTTTGTGAAAAGATTCT
1 TTTATTTTTGTGAAAAGATTCT
7140158 TTTATTTTTGTGAAAAGATTCT
1 TTTATTTTTGTGAAAAGATTCT
7140180 TTT
1 TTT
7140183 TAGATGTTTT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 25 1.00
ACGTcount: A:0.26, C:0.04, G:0.13, T:0.57
Consensus pattern (22 bp):
TTTATTTTTGTGAAAAGATTCT
Found at i:7170423 original size:40 final size:40
Alignment explanation
Indices: 7170374--7170524 Score: 162
Period size: 40 Copynumber: 3.8 Consensus size: 40
7170364 CAGAATTTAA
* ** *
7170374 CCGGATATAGCTACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAGCAACTCGCACAAATGCCTTCGGGACATAAC
* *
7170414 CCGGTTATAGCAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGCAACTCGCACAAATGCCTTCGGGACATAAC
* * * * * *
7170454 CCGGATTTAGTAACTCGCACCAATGCCTTCAGG-CTTAGC
1 CCGGATATAGCAACTCGCACAAATGCCTTCGGGACATAAC
*
7170493 CCGGA-ATTAGTAACTCGCACAAATGCCTTCGG
1 CCGGATA-TAGCAACTCGCACAAATGCCTTCGG
7170525 ATCTTAGTCC
Statistics
Matches: 95, Mismatches: 15, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
39 33 0.35
40 62 0.65
ACGTcount: A:0.26, C:0.29, G:0.21, T:0.24
Consensus pattern (40 bp):
CCGGATATAGCAACTCGCACAAATGCCTTCGGGACATAAC
Found at i:7170561 original size:79 final size:80
Alignment explanation
Indices: 7170393--7170577 Score: 198
Period size: 79 Copynumber: 2.3 Consensus size: 80
7170383 GCTACTCGTT
* * * * *
7170393 CAAATGCCTTCGGGACATAGCCCGG-TTATAGCAACTCGCACAAATGCCTTCGGGACTTAACCCG
1 CAAA-GCCTTCAGGACTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTCGGGACTTAACCCA
* *
7170457 GATTTAGTAACTCGCAC
64 GATATAGTAACTAGCAC
* **
7170474 CAATGCCTTCAGG-CTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTC-GGATCTTAGTCCAG
1 CAAAGCCTTCAGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCAG
*
7170537 ATATAGTCACTTAGCA-
65 ATATAGTAAC-TAGCAC
*
7170553 CAAAGCCTTCGGGACTTAGCCCGGA
1 CAAAGCCTTCAGGACTTAGCCCGGA
7170578 CATCATTCGA
Statistics
Matches: 87, Mismatches: 13, Indels: 9
0.80 0.12 0.08
Matches are distributed among these distances:
78 3 0.03
79 57 0.66
80 24 0.28
81 3 0.03
ACGTcount: A:0.27, C:0.29, G:0.21, T:0.23
Consensus pattern (80 bp):
CAAAGCCTTCAGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGGACTTAACCCAGA
TATAGTAACTAGCAC
Found at i:7176294 original size:17 final size:17
Alignment explanation
Indices: 7176272--7176311 Score: 53
Period size: 17 Copynumber: 2.4 Consensus size: 17
7176262 GTGTTCATTA
7176272 GAAAACCATGACAATTT
1 GAAAACCATGACAATTT
* **
7176289 GAAAACCGTGATGATTT
1 GAAAACCATGACAATTT
7176306 GAAAAC
1 GAAAAC
7176312 TCATTTTCCC
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.45, C:0.15, G:0.17, T:0.23
Consensus pattern (17 bp):
GAAAACCATGACAATTT
Found at i:7182171 original size:48 final size:48
Alignment explanation
Indices: 7182100--7182253 Score: 211
Period size: 48 Copynumber: 3.2 Consensus size: 48
7182090 AGCATGATAT
* *
7182100 ATGATATGTGTGCCAATGTAAGACCATGTCTAGGACATGGAATTGGCG
1 ATGATATGTGTGCCAGTGTAAGACCATGTCTAGGACATGGAATCGGCG
* *
7182148 ATGATATGTGTGCCAGTGTAAGACCATGTCTAGGACATGGCATCGGTG
1 ATGATATGTGTGCCAGTGTAAGACCATGTCTAGGACATGGAATCGGCG
* * * * *
7182196 ATGATATGTGTGCCAGTGTAATACCATGT-TCGGGACATGGCATCAGTG
1 ATGATATGTGTGCCAGTGTAAGACCATGTCT-AGGACATGGAATCGGCG
7182244 ATGATATGTG
1 ATGATATGTG
7182254 GATTCATGTA
Statistics
Matches: 98, Mismatches: 7, Indels: 2
0.92 0.07 0.02
Matches are distributed among these distances:
47 1 0.01
48 97 0.99
ACGTcount: A:0.27, C:0.15, G:0.30, T:0.29
Consensus pattern (48 bp):
ATGATATGTGTGCCAGTGTAAGACCATGTCTAGGACATGGAATCGGCG
Found at i:7182279 original size:48 final size:48
Alignment explanation
Indices: 7182100--7182283 Score: 169
Period size: 48 Copynumber: 3.8 Consensus size: 48
7182090 AGCATGATAT
* * * * ** *
7182100 ATGATATGTGTGCCAATGTAAGACCATGT-CTAGGACATGGAATTGGCG
1 ATGATATGTGTGCCAGTGTAAGACCATATAC-GGGACATGGCATCAGTG
* * *
7182148 ATGATATGTGTGCCAGTGTAAGACCATGT-CTAGGACATGGCATCGGTG
1 ATGATATGTGTGCCAGTGTAAGACCATATAC-GGGACATGGCATCAGTG
* * *
7182196 ATGATATGTGTGCCAGTGTAATACCATGTTCGGGACATGGCATCAGTG
1 ATGATATGTGTGCCAGTGTAAGACCATATACGGGACATGGCATCAGTG
* *
7182244 ATGATATGTG-GATTCA-TGTAAGACCATATAGGGGACATGG
1 ATGATATGTGTG--CCAGTGTAAGACCATATACGGGACATGG
7182284 AATTAGTACT
Statistics
Matches: 121, Mismatches: 12, Indels: 6
0.87 0.09 0.04
Matches are distributed among these distances:
47 1 0.01
48 117 0.97
49 3 0.02
ACGTcount: A:0.28, C:0.15, G:0.30, T:0.28
Consensus pattern (48 bp):
ATGATATGTGTGCCAGTGTAAGACCATATACGGGACATGGCATCAGTG
Found at i:7182280 original size:96 final size:96
Alignment explanation
Indices: 7182100--7182283 Score: 212
Period size: 96 Copynumber: 1.9 Consensus size: 96
7182090 AGCATGATAT
**
7182100 ATGATATGTGTGCCAATGTAAGACCATGTCTAGGACATGGAATTGGCGATGATATGTGTGCCAGT
1 ATGATATGTGTGCCAATGTAAGACCATGTCTAGGACATGGAATCAGCGATGATATGTGTGCCAGT
* **
7182165 GTAAGACCATGTCTAGGACATGGCATCGGTG
66 GTAAGACCATATAGAGGACATGGCATCGGTG
* * * * * *
7182196 ATGATATGTGTGCCAGTGTAATACCATGT-TCGGGACATGGCATCAGTGATGATATGTG-GATTC
1 ATGATATGTGTGCCAATGTAAGACCATGTCT-AGGACATGGAATCAGCGATGATATGTGTG--CC
*
7182259 A-TGTAAGACCATATAGGGGACATGG
63 AGTGTAAGACCATATAGAGGACATGG
7182284 AATTAGTACT
Statistics
Matches: 73, Mismatches: 12, Indels: 6
0.80 0.13 0.07
Matches are distributed among these distances:
95 2 0.03
96 69 0.95
97 2 0.03
ACGTcount: A:0.28, C:0.15, G:0.30, T:0.28
Consensus pattern (96 bp):
ATGATATGTGTGCCAATGTAAGACCATGTCTAGGACATGGAATCAGCGATGATATGTGTGCCAGT
GTAAGACCATATAGAGGACATGGCATCGGTG
Found at i:7184200 original size:31 final size:32
Alignment explanation
Indices: 7184147--7184207 Score: 88
Period size: 31 Copynumber: 1.9 Consensus size: 32
7184137 GACATAGGAT
* *
7184147 TTCGATATGTGATGTGCAAGTAAGATCATGGC
1 TTCGATATATGATGTGCAAGTAAGACCATGGC
*
7184179 TTCGATATATG-TGTGCGAGTAAGACCATG
1 TTCGATATATGATGTGCAAGTAAGACCATG
7184208 TTTTATATGT
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
31 16 0.62
32 10 0.38
ACGTcount: A:0.28, C:0.13, G:0.28, T:0.31
Consensus pattern (32 bp):
TTCGATATATGATGTGCAAGTAAGACCATGGC
Found at i:7187908 original size:43 final size:43
Alignment explanation
Indices: 7187861--7187965 Score: 131
Period size: 43 Copynumber: 2.4 Consensus size: 43
7187851 TAGCCCAGCT
7187861 ATGGTCTTACACAAAAT-AAATTAACAATGCCAATGTCCTAGAC
1 ATGGTCTTACACAAAATCAAA-TAACAATGCCAATGTCCTAGAC
** * ** *
7187904 ATGGTCTTACACGTAATCACATAATGATTCCAATGTCCTAGAC
1 ATGGTCTTACACAAAATCAAATAACAATGCCAATGTCCTAGAC
*
7187947 ATGGTCTTACACATAATCA
1 ATGGTCTTACACAAAATCA
7187966 CATCTTGATA
Statistics
Matches: 54, Mismatches: 7, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
43 52 0.96
44 2 0.04
ACGTcount: A:0.37, C:0.22, G:0.12, T:0.29
Consensus pattern (43 bp):
ATGGTCTTACACAAAATCAAATAACAATGCCAATGTCCTAGAC
Found at i:7199942 original size:23 final size:23
Alignment explanation
Indices: 7199883--7199929 Score: 94
Period size: 23 Copynumber: 2.0 Consensus size: 23
7199873 GAATAGAGAT
7199883 AGACAACAACATAAAAAAAAAGA
1 AGACAACAACATAAAAAAAAAGA
7199906 AGACAACAACATAAAAAAAAAGA
1 AGACAACAACATAAAAAAAAAGA
7199929 A
1 A
7199930 AAGAAAGAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.74, C:0.13, G:0.09, T:0.04
Consensus pattern (23 bp):
AGACAACAACATAAAAAAAAAGA
Found at i:7200676 original size:94 final size:94
Alignment explanation
Indices: 7200515--7200702 Score: 367
Period size: 94 Copynumber: 2.0 Consensus size: 94
7200505 TCTAAAACTC
7200515 GAAATTCAGTTCTGTAAATTTTCCCCGGAACTAGACTCATATATCTATATGGTAGAATTTTTGTA
1 GAAATTCAGTTCTGTAAATTTTCCCCGGAACTAGACTCATATATCTATATGGTAGAATTTTTGTA
7200580 GAATTTTTGGTCGGGCCAATTGGTACACT
66 GAATTTTTGGTCGGGCCAATTGGTACACT
*
7200609 GAAATTCAGTTCTGTAAATTTTCCCCGGAACTAGACTCATATATCTATATGGTAGAATTTTTTTA
1 GAAATTCAGTTCTGTAAATTTTCCCCGGAACTAGACTCATATATCTATATGGTAGAATTTTTGTA
7200674 GAATTTTTGGTCGGGCCAATTGGTACACT
66 GAATTTTTGGTCGGGCCAATTGGTACACT
7200703 TTATTAGTTA
Statistics
Matches: 93, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
94 93 1.00
ACGTcount: A:0.28, C:0.16, G:0.19, T:0.38
Consensus pattern (94 bp):
GAAATTCAGTTCTGTAAATTTTCCCCGGAACTAGACTCATATATCTATATGGTAGAATTTTTGTA
GAATTTTTGGTCGGGCCAATTGGTACACT
Found at i:7208443 original size:89 final size:89
Alignment explanation
Indices: 7208268--7208434 Score: 235
Period size: 89 Copynumber: 1.9 Consensus size: 89
7208258 AACTTAAAGT
* ** ** * *
7208268 ATTTCTAGTCACAAAATACCTTGACAGCTTGTTGATAGTGTGAGGCGATCTCTGACATCCTTATG
1 ATTTCAAGTCACAAAATACCAAGACAGCTCATTGATAGTGTGAGACGATCTCTGACATCCTTACG
*
7208333 ATTTTTTGAGTTGGAGTTGCGAGA
66 ATTTTTCGAGTTGGAGTTGCGAGA
* * *
7208357 ATTTCAAGTCACAAAATACCAAGATAGCTCATTGATAGTGTGAGACGATCTCTTACTTCCTTACG
1 ATTTCAAGTCACAAAATACCAAGACAGCTCATTGATAGTGTGAGACGATCTCTGACATCCTTACG
7208422 ATTTTTCGAGTTG
66 ATTTTTCGAGTTG
7208435 TCTTTGCGAT
Statistics
Matches: 67, Mismatches: 11, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
89 67 1.00
ACGTcount: A:0.27, C:0.17, G:0.20, T:0.35
Consensus pattern (89 bp):
ATTTCAAGTCACAAAATACCAAGACAGCTCATTGATAGTGTGAGACGATCTCTGACATCCTTACG
ATTTTTCGAGTTGGAGTTGCGAGA
Found at i:7208717 original size:53 final size:53
Alignment explanation
Indices: 7208647--7208844 Score: 180
Period size: 53 Copynumber: 3.7 Consensus size: 53
7208637 TTTTCCTTTT
* * * *
7208647 TAAAATTACCATTGCCATGCCTTGACATGATCTTACGTGATATCCTTGCCTTA
1 TAAACTTACCAATGCCATGCCTTGACATGGTCTTACATGATATCCTTGCCTTA
* * * * * ** **
7208700 TGAACTCACCATTGCCATGGCTTGGCATGGTCTTACATGGGATGTTTGCCTTA
1 TAAACTTACCAATGCCATGCCTTGACATGGTCTTACATGATATCCTTGCCTTA
** * * * *
7208753 TCATAGTTTATCAATGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTG
1 T-A-AACTTACCAATGCCATGCCTTGACATGGTCTTACATGATATCCTTGCCTTA
* *
7208808 TAAAACTTACCAATGCCATGCCTTGGCATGTTCTTAC
1 T-AAACTTACCAATGCCATGCCTTGACATGGTCTTAC
7208845 TTGGTATTCT
Statistics
Matches: 111, Mismatches: 32, Indels: 3
0.76 0.22 0.02
Matches are distributed among these distances:
53 43 0.39
54 28 0.25
55 40 0.36
ACGTcount: A:0.23, C:0.24, G:0.17, T:0.36
Consensus pattern (53 bp):
TAAACTTACCAATGCCATGCCTTGACATGGTCTTACATGATATCCTTGCCTTA
Found at i:7228713 original size:46 final size:46
Alignment explanation
Indices: 7228663--7228838 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
7228653 TGGTTGAGCA
7228663 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
7228709 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
7228754 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
7228802 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
7228839 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 63 0.57
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:7228819 original size:93 final size:93
Alignment explanation
Indices: 7228660--7228831 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
7228650 GGATGGTTGA
* *
7228660 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
7228725 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
7228753 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
7228818 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
7228832 CTTATGGGCG
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:7233761 original size:13 final size:13
Alignment explanation
Indices: 7233743--7233779 Score: 65
Period size: 13 Copynumber: 2.8 Consensus size: 13
7233733 AGTAATCAAA
7233743 CACGGGCGTGTGC
1 CACGGGCGTGTGC
*
7233756 CACGGGAGTGTGC
1 CACGGGCGTGTGC
7233769 CACGGGCGTGT
1 CACGGGCGTGT
7233780 CCCTGCCGGG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
13 22 1.00
ACGTcount: A:0.11, C:0.27, G:0.46, T:0.16
Consensus pattern (13 bp):
CACGGGCGTGTGC
Found at i:7237355 original size:14 final size:14
Alignment explanation
Indices: 7237336--7237363 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
7237326 CCGGACAAAA
7237336 TCTCCACACGTAGT
1 TCTCCACACGTAGT
7237350 TCTCCACACGTAGT
1 TCTCCACACGTAGT
7237364 CATCGAGTCT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.21, C:0.36, G:0.14, T:0.29
Consensus pattern (14 bp):
TCTCCACACGTAGT
Found at i:7237631 original size:48 final size:48
Alignment explanation
Indices: 7237572--7237712 Score: 264
Period size: 48 Copynumber: 2.9 Consensus size: 48
7237562 GCCTACATAT
*
7237572 TTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACAGAC
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACAGAC
7237620 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACAGAC
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACAGAC
*
7237668 TTCACATTAGCCATTCGGCTTTACCACATATATATATCTCATACA
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACA
7237713 TATTTCANNN
Statistics
Matches: 91, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
48 91 1.00
ACGTcount: A:0.31, C:0.29, G:0.08, T:0.32
Consensus pattern (48 bp):
TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACAGAC
Found at i:7249130 original size:80 final size:80
Alignment explanation
Indices: 7248985--7250104 Score: 2069
Period size: 80 Copynumber: 14.0 Consensus size: 80
7248975 ACATGCCACC
* * * * * * * * **
7248985 AGCATGATTGCTCTTCGGGACCTAGCCCGGATATAACACCAGCACGAATGCTCTTCGGGGTTTAG
1 AGCATGAATGCTCTTCGGAACTTAGTCCGAATACATCACTAGCACGAATGCTCTTCGGGACTTAG
* *
7249050 CACGGGTATATCACT
66 CCCGGATATATCACT
* *
7249065 AGCACGAATGCTCTTCGGAACTTAGTCCGAATACATCACTAGCACGAATGCTCTTCGAGACTTAG
1 AGCATGAATGCTCTTCGGAACTTAGTCCGAATACATCACTAGCACGAATGCTCTTCGGGACTTAG
*
7249130 CCCGGATATGTCACT
66 CCCGGATATATCACT
* * *
7249145 AGCACGAATGCTCTTCGAAACTTAGTCCGGATACATCACTAGCACGAATGCTCTTCGGGACTTAG
1 AGCATGAATGCTCTTCGGAACTTAGTCCGAATACATCACTAGCACGAATGCTCTTCGGGACTTAG
7249210 CCCGGATATATCACT
66 CCCGGATATATCACT
7249225 AGCATGAATGCTCTTCGGAACTTAGTCCGAATACATCACTAGCACGAATGCTCTTCGGGACTTAG
1 AGCATGAATGCTCTTCGGAACTTAGTCCGAATACATCACTAGCACGAATGCTCTTCGGGACTTAG
7249290 CCCGGATATATCACT
66 CCCGGATATATCACT
7249305 AGCATGAATGCTCTTCGGAACTTAGTCCGAATACATCACTAGCACGAATGCTCTTCGGGACTTAG
1 AGCATGAATGCTCTTCGGAACTTAGTCCGAATACATCACTAGCACGAATGCTCTTCGGGACTTAG
7249370 CCCGGATATATCACT
66 CCCGGATATATCACT
7249385 AGCATGAATGCTCTTCGGAACTTAGTCCGAATACATCACTAGCACGAATGCTCTTCGGGACTTAG
1 AGCATGAATGCTCTTCGGAACTTAGTCCGAATACATCACTAGCACGAATGCTCTTCGGGACTTAG
7249450 CCCGGATATATCACT
66 CCCGGATATATCACT
7249465 AGCATGAATGCTCTTCGGAACTTAGTCCGAATACATCACTAGCACGAATGCTCTTCGGGACTTAG
1 AGCATGAATGCTCTTCGGAACTTAGTCCGAATACATCACTAGCACGAATGCTCTTCGGGACTTAG
7249530 CCCGGATATATCACT
66 CCCGGATATATCACT
7249545 AGCATGAATGCTCTTCGGAACTTAGTCCGAATACATCACTAGCACGAATGCTCTTCGGGACTTAG
1 AGCATGAATGCTCTTCGGAACTTAGTCCGAATACATCACTAGCACGAATGCTCTTCGGGACTTAG
7249610 CCCGGATATATCACT
66 CCCGGATATATCACT
7249625 AGCATGAATGCTCTTCGGAACTTAGTCCGAATACATCACTAGCACGAATGCTCTTCGGGACTTAG
1 AGCATGAATGCTCTTCGGAACTTAGTCCGAATACATCACTAGCACGAATGCTCTTCGGGACTTAG
7249690 CCCGGATATATCACT
66 CCCGGATATATCACT
7249705 AGCATGAATGCTCTTCGGAACTTAGTCCGAATACATCACTAGCACGAATGCTCTTCGGGACTTAG
1 AGCATGAATGCTCTTCGGAACTTAGTCCGAATACATCACTAGCACGAATGCTCTTCGGGACTTAG
7249770 CCCGGATATATCACT
66 CCCGGATATATCACT
7249785 AGCATGAATGCTCTTCGGAACTTAGTCCGAATACATCACTAGCACGAATGCTCTTCGGGACTTAG
1 AGCATGAATGCTCTTCGGAACTTAGTCCGAATACATCACTAGCACGAATGCTCTTCGGGACTTAG
7249850 CCCGGATATATCACT
66 CCCGGATATATCACT
7249865 AGCATGAATGCTCTTCGGAACTTAGTCCGAATACATCACTAGCACGAATGCTCTTCGGGACTTAG
1 AGCATGAATGCTCTTCGGAACTTAGTCCGAATACATCACTAGCACGAATGCTCTTCGGGACTTAG
7249930 CCCGGATATATCACT
66 CCCGGATATATCACT
7249945 AGCATGAATGCTCTTCGGAACTTAGTCCGAATACATCACTAGCACGAATGCTCTTCGGGACTTAG
1 AGCATGAATGCTCTTCGGAACTTAGTCCGAATACATCACTAGCACGAATGCTCTTCGGGACTTAG
7250010 CCCGGATATATCACT
66 CCCGGATATATCACT
7250025 AGCATGAATGCTCTTCGGAACTTAGTCCGAATACATCACTAGCACGAATGCTCTTCGGGACTTAG
1 AGCATGAATGCTCTTCGGAACTTAGTCCGAATACATCACTAGCACGAATGCTCTTCGGGACTTAG
*
7250090 CCCAGATATATCACT
66 CCCGGATATATCACT
7250105 CTCAATTCTC
Statistics
Matches: 1017, Mismatches: 23, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
80 1017 1.00
ACGTcount: A:0.27, C:0.26, G:0.20, T:0.26
Consensus pattern (80 bp):
AGCATGAATGCTCTTCGGAACTTAGTCCGAATACATCACTAGCACGAATGCTCTTCGGGACTTAG
CCCGGATATATCACT
Found at i:7251429 original size:37 final size:37
Alignment explanation
Indices: 7251370--7251478 Score: 164
Period size: 37 Copynumber: 2.9 Consensus size: 37
7251360 AGCTCAGACG
* ** *
7251370 AAATCACCACACAAAGTTATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
7251407 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
* *
7251444 TAATCTCCACGCGTAGTCATCGGGTCTTACCCGGA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
7251479 AAATATTTCC
Statistics
Matches: 66, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
37 66 1.00
ACGTcount: A:0.28, C:0.31, G:0.19, T:0.22
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:7262507 original size:13 final size:13
Alignment explanation
Indices: 7262489--7262525 Score: 65
Period size: 13 Copynumber: 2.8 Consensus size: 13
7262479 AGTAATCAAA
7262489 CACGGGCGTGTGC
1 CACGGGCGTGTGC
*
7262502 CACGGGAGTGTGC
1 CACGGGCGTGTGC
7262515 CACGGGCGTGT
1 CACGGGCGTGT
7262526 CCCTGTCGGG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
13 22 1.00
ACGTcount: A:0.11, C:0.27, G:0.46, T:0.16
Consensus pattern (13 bp):
CACGGGCGTGTGC
Found at i:7266101 original size:14 final size:14
Alignment explanation
Indices: 7266082--7266109 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
7266072 CCGGACAAAA
7266082 TCTCCACACGTAGT
1 TCTCCACACGTAGT
7266096 TCTCCACACGTAGT
1 TCTCCACACGTAGT
7266110 CATCAGGTCT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.21, C:0.36, G:0.14, T:0.29
Consensus pattern (14 bp):
TCTCCACACGTAGT
Found at i:7266368 original size:50 final size:47
Alignment explanation
Indices: 7266318--7266647 Score: 357
Period size: 50 Copynumber: 6.9 Consensus size: 47
7266308 GCCCACATAT
* * * *
7266318 TTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATATATATA
1 TTCACATTGGCCATTCGGCTTTACCACATATGCATATCTCATAT-T-CA
* *
7266367 TTTCACATTGACCATTCGGCTGTACCACATATGCATATCTCATATTCA
1 -TTCACATTGGCCATTCGGCTTTACCACATATGCATATCTCATATTCA
* * * *
7266415 CT-ACATTGGCCATTCGGCCTTATCCCACATATGCAT-GCTCACATTCA
1 TTCACATTGGCCATTCGG-CTT-TACCACATATGCATATCTCATATTCA
* * *
7266462 -TCACTTTGGCCATTCGGCTTTACCACATATGCCTATCTCATATATATA
1 TTCACATTGGCCATTCGGCTTTACCACATATGCATATCTCATAT-T-CA
* *
7266510 TTTCACATTGACCATTCGGCTGTACCACATATGCATATCTCATATTCA
1 -TTCACATTGGCCATTCGGCTTTACCACATATGCATATCTCATATTCA
* * * *
7266558 CT-ACATTGGCCATTCGGCCTTATCACACATATGCAT-GCTCACATTCA
1 TTCACATTGGCCATTCGGCTTTA-C-CACATATGCATATCTCATATTCA
7266605 -TCACATTGGCCATTCGGCTTTACCACATATGCATATCTCATAT
1 TTCACATTGGCCATTCGGCTTTACCACATATGCATATCTCATAT
7266648 ATATATTTCA
Statistics
Matches: 236, Mismatches: 32, Indels: 28
0.80 0.11 0.09
Matches are distributed among these distances:
45 23 0.10
46 49 0.21
47 57 0.24
48 27 0.11
49 2 0.01
50 78 0.33
ACGTcount: A:0.27, C:0.29, G:0.11, T:0.34
Consensus pattern (47 bp):
TTCACATTGGCCATTCGGCTTTACCACATATGCATATCTCATATTCA
Found at i:7266532 original size:143 final size:143
Alignment explanation
Indices: 7266327--7266665 Score: 642
Period size: 143 Copynumber: 2.4 Consensus size: 143
7266317 TTTCACACTA
*
7266327 GCCATTCGGCTTTACCACATATACATATCTCATATATATATTTCACATTGACCATTCGGCTGTAC
1 GCCATTCGGCTTTACCACATATGCATATCTCATATATATATTTCACATTGACCATTCGGCTGTAC
*
7266392 CACATATGCATATCTCATATTCACTACATTGGCCATTCGGCCTTATCCCACATATGCATGCTCAC
66 CACATATGCATATCTCATATTCACTACATTGGCCATTCGGCCTTATCACACATATGCATGCTCAC
*
7266457 ATTCATCACTTTG
131 ATTCATCACATTG
*
7266470 GCCATTCGGCTTTACCACATATGCCTATCTCATATATATATTTCACATTGACCATTCGGCTGTAC
1 GCCATTCGGCTTTACCACATATGCATATCTCATATATATATTTCACATTGACCATTCGGCTGTAC
7266535 CACATATGCATATCTCATATTCACTACATTGGCCATTCGGCCTTATCACACATATGCATGCTCAC
66 CACATATGCATATCTCATATTCACTACATTGGCCATTCGGCCTTATCACACATATGCATGCTCAC
7266600 ATTCATCACATTG
131 ATTCATCACATTG
7266613 GCCATTCGGCTTTACCACATATGCATATCTCATATATATATTTCACATTGACC
1 GCCATTCGGCTTTACCACATATGCATATCTCATATATATATTTCACATTGACC
7266666 GTTCAGCTTT
Statistics
Matches: 191, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
143 191 1.00
ACGTcount: A:0.27, C:0.28, G:0.11, T:0.34
Consensus pattern (143 bp):
GCCATTCGGCTTTACCACATATGCATATCTCATATATATATTTCACATTGACCATTCGGCTGTAC
CACATATGCATATCTCATATTCACTACATTGGCCATTCGGCCTTATCACACATATGCATGCTCAC
ATTCATCACATTG
Found at i:7266645 original size:93 final size:90
Alignment explanation
Indices: 7266369--7266647 Score: 296
Period size: 93 Copynumber: 3.0 Consensus size: 90
7266359 TATATATATT
*
7266369 TCACATTGACCATTCGG-CTGTACCACATATGCATATCTCATATTCA-CTACATTGGCCATTCGG
1 TCACATTGGCCATTCGGCCT-TACCACATATGC--ATCTCATATTCATC-ACATTGGCCATTCGG
* * *
7266432 CCTTATCCCACATATGCAT-GCTCACATTCA
62 -CTT-TACCACATATGCATATCTCATATTCA
* * * *
7266462 TCACTTTGGCCATTCGGCTTTACCACATATGCCTATCTCATATATATATTTCACATTGACCATTC
1 TCACATTGGCCATTCGGCCTTACCACATATG-C-ATCTCATAT-T-CA--TCACATTGGCCATTC
*
7266527 GGCTGTACCACATATGCATATCTCATATTCA
60 GGCTTTACCACATATGCATATCTCATATTCA
*
7266558 -CTACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCATCACATTGGCCATTCGG
1 TC-ACATTGGCCATTCGGCCTTA-C-CACATATGCAT-CTCATATTCATCACATTGGCCATTCGG
7266622 CTTTACCACATATGCATATCTCATAT
62 CTTTACCACATATGCATATCTCATAT
7266648 ATATATTTCA
Statistics
Matches: 159, Mismatches: 15, Indels: 24
0.80 0.08 0.12
Matches are distributed among these distances:
93 77 0.48
94 3 0.02
95 16 0.10
96 32 0.20
97 22 0.14
98 9 0.06
ACGTcount: A:0.26, C:0.29, G:0.11, T:0.33
Consensus pattern (90 bp):
TCACATTGGCCATTCGGCCTTACCACATATGCATCTCATATTCATCACATTGGCCATTCGGCTTT
ACCACATATGCATATCTCATATTCA
Found at i:7280832 original size:40 final size:40
Alignment explanation
Indices: 7280800--7281191 Score: 532
Period size: 40 Copynumber: 9.8 Consensus size: 40
7280790 CCAGCATGAT
* * * *
7280800 TGCTCTTCGGGACCTAGCCCGGATATAACACCAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
** * * *
7280840 TGCTCTTCGGGGTTTAGCACGGGTATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* * *
7280880 TGCTCTTCGGAACTTAGTCCGAATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* **
7280920 TGCTCTTCGAGACTTAGCCCGGATATGTCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
** *
7280960 TGCTCTTCGAAACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* * *
7281000 TGCTCTTCGAGACTTAGCCTGGATACGTCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
*
7281040 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* * *
7281080 TGCCCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
*
7281120 TGCTCTTCGGGACTTAGCCCGGATACGTCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* *
7281160 TGCTCTTCGGGACTTAGCCCAGATATATCACT
1 TGCTCTTCGGGACTTAGCCCGGATACATCACT
7281192 CTCAATTCTC
Statistics
Matches: 308, Mismatches: 44, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
40 308 1.00
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
Found at i:7282523 original size:37 final size:37
Alignment explanation
Indices: 7282464--7282609 Score: 229
Period size: 37 Copynumber: 3.9 Consensus size: 37
7282454 AGCTCAGACG
* * *
7282464 AAATCACCACACGAAGTTATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
7282501 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
* *
7282538 TACTCTCCACACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
* *
7282575 TAATCTCCACGCGTAGTCATCGGGTCTTACCCGGA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
7282610 AAATATTTCC
Statistics
Matches: 102, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 102 1.00
ACGTcount: A:0.25, C:0.32, G:0.20, T:0.23
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:7282981 original size:143 final size:143
Alignment explanation
Indices: 7282772--7283628 Score: 1259
Period size: 143 Copynumber: 6.0 Consensus size: 143
7282762 TTTCACACTA
* * *
7282772 GCCATTCGGCTTTACCACATATACATATCTCATATATATATTTCACATTGACCATTCGGCTATAC
1 GCCATTCGGCCTTACCACATATGCATATCTCATATATATATTTCACATTGACCATTCGGCTGTAC
7282837 CACATATGCATATCTCATATTCACCACATTGGCCATTCGGCCTTATCACACATATGCATGCTCAC
66 CACATATGCATATCTCATATTCACCACATTGGCCATTCGGCCTTATCACACATATGCATGCTCAC
7282902 ATTCATCACATTG
131 ATTCATCACATTG
7282915 GCCATTCGGCCTTACCACATATGCATATCTCATATATATATTTCACATTGACCATTCGGCTGTAC
1 GCCATTCGGCCTTACCACATATGCATATCTCATATATATATTTCACATTGACCATTCGGCTGTAC
*
7282980 CACATATGCATATCTCATATTCACCACATTGGCCATTCGGCCTTATCACAGATATGCATGCTCAC
66 CACATATGCATATCTCATATTCACCACATTGGCCATTCGGCCTTATCACACATATGCATGCTCAC
7283045 ATTCATCACATTG
131 ATTCATCACATTG
7283058 GCCATTCGGCCTTACCACATATGCATATCTCATATATATATTTCACATTGACCATTCGGCTGTAC
1 GCCATTCGGCCTTACCACATATGCATATCTCATATATATATTTCACATTGACCATTCGGCTGTAC
*
7283123 CACATATGCATATCTCATATTCACCACATTGGCCATTCGGCCTTATCACAGATATGCATGCTCAC
66 CACATATGCATATCTCATATTCACCACATTGGCCATTCGGCCTTATCACACATATGCATGCTCAC
7283188 ATTCATCACATTG
131 ATTCATCACATTG
7283201 GCCATTCGGCCTTACCACATATGCATATCTCATATATATATTTCACATTGACCATTCGGCTGTAC
1 GCCATTCGGCCTTACCACATATGCATATCTCATATATATATTTCACATTGACCATTCGGCTGTAC
7283266 CACATATGCATATCTCATATTCACCACATTGGCCATTCGGCCTTATCACACATATGCATGCTCAC
66 CACATATGCATATCTCATATTCACCACATTGGCCATTCGGCCTTATCACACATATGCATGCTCAC
7283331 ATTCATCACATTG
131 ATTCATCACATTG
* * *
7283344 GCCATTCGGCCTTACCACATATGCATATCTCATATATATATTTCACATTGACCGTTCAGCTTTAC
1 GCCATTCGGCCTTACCACATATGCATATCTCATATATATATTTCACATTGACCATTCGGCTGTAC
** * * * * *
7283409 CACATATGCATATCTCATACATAT-TTCACATTAGCCATTCGGCTTTA-C-CGCATATACATTTC
66 CACATATGCATATCTCAT--AT-TCACCACATTGGCCATTCGGCCTTATCACACATATGCA-TGC
** *
7283471 TCATACATTTTTCACATTA
127 TC--ACATTCATCACATTG
* * * * *
7283490 GCCATTCGGCTTTACGACATAT--ATA---CATGT-TCATATTCACCACATTGGCCATTCGGCCT
1 GCCATTCGGCCTTACCACATATGCATATCTCATATAT-ATATT--TCACATTGACCATTCGG-CT
* * * * * *
7283549 -TATCATACATATGCAT-GCTCACATTCATCACATTGGCCATTTGGCCTTATCACATATATGCAT
62 GTA-C-CACATATGCATATCTCATATTCACCACATTGGCCATTCGGCCTTATCACACATATGCAT
*
7283612 GTTCACATTCATCACAT
125 GCTCACATTCATCACAT
7283629 AAAATCCTAA
Statistics
Matches: 660, Mismatches: 39, Indels: 32
0.90 0.05 0.04
Matches are distributed among these distances:
140 1 0.00
141 21 0.03
142 21 0.03
143 531 0.80
144 22 0.03
145 31 0.05
146 33 0.05
ACGTcount: A:0.28, C:0.28, G:0.11, T:0.33
Consensus pattern (143 bp):
GCCATTCGGCCTTACCACATATGCATATCTCATATATATATTTCACATTGACCATTCGGCTGTAC
CACATATGCATATCTCATATTCACCACATTGGCCATTCGGCCTTATCACACATATGCATGCTCAC
ATTCATCACATTG
Found at i:7286605 original size:38 final size:39
Alignment explanation
Indices: 7286544--7286620 Score: 129
Period size: 38 Copynumber: 2.0 Consensus size: 39
7286534 AAACAACACC
7286544 CGATTAAAACCTTATTTTGATGAGATTGATAGCAGGAAT
1 CGATTAAAACCTTATTTTGATGAGATTGATAGCAGGAAT
* *
7286583 CGATTAAAA-CTTTTTTTGATGAGATTGATAGTAGGAAT
1 CGATTAAAACCTTATTTTGATGAGATTGATAGCAGGAAT
7286621 GAGGAGTCTA
Statistics
Matches: 36, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
38 27 0.75
39 9 0.25
ACGTcount: A:0.35, C:0.08, G:0.21, T:0.36
Consensus pattern (39 bp):
CGATTAAAACCTTATTTTGATGAGATTGATAGCAGGAAT
Found at i:7286995 original size:55 final size:55
Alignment explanation
Indices: 7286912--7287034 Score: 131
Period size: 55 Copynumber: 2.2 Consensus size: 55
7286902 TGAACCTGCC
* * * * *
7286912 AAAACAACACGGGCGTTCGACAGGCCCGTGTGGAAGAACCTTGGACGAACGTGTT
1 AAAATAACACGGGCGTTCGACACGCCCGTGTCGAACAACCGTGGACGAACGTGTT
* * * * * *
7286967 AAAATAGCACGGGCGTGT-GACACTCCCGTGTCTAACACCCGTGGTCGAACTTGTT
1 AAAATAACACGGGCGT-TCGACACGCCCGTGTCGAACAACCGTGGACGAACGTGTT
7287022 AAAATAACACGGG
1 AAAATAACACGGG
7287035 ATGGGGCTTG
Statistics
Matches: 55, Mismatches: 12, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
55 54 0.98
56 1 0.02
ACGTcount: A:0.29, C:0.24, G:0.28, T:0.19
Consensus pattern (55 bp):
AAAATAACACGGGCGTTCGACACGCCCGTGTCGAACAACCGTGGACGAACGTGTT
Found at i:7291048 original size:52 final size:51
Alignment explanation
Indices: 7290952--7291052 Score: 132
Period size: 52 Copynumber: 2.0 Consensus size: 51
7290942 CTGGACTTTA
* *
7290952 TCACACGGGCAGACCACACGGTCGTGCTAACTTGGCAGAATCGAAGCATGAT
1 TCACACGGGCAGACCACACAGCCGTGCTAACTTGGCAGAATCGAA-CATGAT
* **
7291004 TCACACGGGCAGACCACACAGCCGTG-TCAATTTGGCAGGCTCGAACATG
1 TCACACGGGCAGACCACACAGCCGTGCT-AACTTGGCAGAATCGAACATG
7291053 GCCTGAAGTA
Statistics
Matches: 43, Mismatches: 5, Indels: 3
0.84 0.10 0.06
Matches are distributed among these distances:
51 5 0.12
52 38 0.88
ACGTcount: A:0.28, C:0.29, G:0.27, T:0.17
Consensus pattern (51 bp):
TCACACGGGCAGACCACACAGCCGTGCTAACTTGGCAGAATCGAACATGAT
Found at i:7297731 original size:48 final size:48
Alignment explanation
Indices: 7297660--7298073 Score: 508
Period size: 48 Copynumber: 8.6 Consensus size: 48
7297650 TATGTGTGCT
* *
7297660 AGTGTAAGACCATATTTGGAACATGGCATCAGCAATGTTATGAGAGCC
1 AGTGTAAGACCATGTTTGGAACATGGCATCGGCAATGTTATGAGAGCC
** *
7297708 AGTGTAAGACCATGTTTGGAACATGGCATCGATAATGTTATGAGAACC
1 AGTGTAAGACCATGTTTGGAACATGGCATCGGCAATGTTATGAGAGCC
* *
7297756 AGTGTAAGACCTTGTTTGGAACATGGCATCGGCAATGTTATGAGAGCT
1 AGTGTAAGACCATGTTTGGAACATGGCATCGGCAATGTTATGAGAGCC
* * * *
7297804 AGTGTAAGATCACGTTTGGAACATGGCATCGACAATATTATGAGAGCC
1 AGTGTAAGACCATGTTTGGAACATGGCATCGGCAATGTTATGAGAGCC
*
7297852 AGTGTAAGACCATGTTTGGAATATGGCATCGGCAATGTTATGAGAGCC
1 AGTGTAAGACCATGTTTGGAACATGGCATCGGCAATGTTATGAGAGCC
* *
7297900 AGTGTAAGACCATGTTTGGAACATCGCATCGGCAATGTTACGAGAGCC
1 AGTGTAAGACCATGTTTGGAACATGGCATCGGCAATGTTATGAGAGCC
* * * ** * *
7297948 AGAGTAAGACCATGTCTAGG-ACATGGCATCGGCATTGAGACGAGAGCT
1 AGTGTAAGACCATGT-TTGGAACATGGCATCGGCAATGTTATGAGAGCC
* * * * * ** **
7297996 AGTGTAAGGCCATGTCTGGTACATGGCCTCGTCCTTGACATGTA-AGCC
1 AGTGTAAGACCATGTTTGGAACATGGCATCGGCAATGTTATG-AGAGCC
* *
7298044 AGTGTAAGACCATGTCTGGGACATGGCATC
1 AGTGTAAGACCATGTTTGGAACATGGCATC
7298074 AACAATTTAC
Statistics
Matches: 319, Mismatches: 44, Indels: 6
0.86 0.12 0.02
Matches are distributed among these distances:
47 2 0.01
48 313 0.98
49 4 0.01
ACGTcount: A:0.29, C:0.18, G:0.28, T:0.25
Consensus pattern (48 bp):
AGTGTAAGACCATGTTTGGAACATGGCATCGGCAATGTTATGAGAGCC
Found at i:7299323 original size:21 final size:21
Alignment explanation
Indices: 7299293--7299334 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
7299283 GTGAAGAAGA
*
7299293 CACACGGGCGTGT-CACCCTTT
1 CACACAGGCGTGTGC-CCCTTT
7299314 CACACAGGCGTGTGCCCCTTT
1 CACACAGGCGTGTGCCCCTTT
7299335 TTGCTTGGAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 18 0.95
22 1 0.05
ACGTcount: A:0.14, C:0.38, G:0.24, T:0.24
Consensus pattern (21 bp):
CACACAGGCGTGTGCCCCTTT
Found at i:7304669 original size:17 final size:17
Alignment explanation
Indices: 7304649--7304720 Score: 54
Period size: 17 Copynumber: 4.2 Consensus size: 17
7304639 ATGATGGAGT
*
7304649 ATGAACTGCTATTTTGC
1 ATGAACTGTTATTTTGC
* * ** *
7304666 ATGAATTTTTATTCGGT
1 ATGAACTGTTATTTTGC
* *
7304683 ATGAACTGATATTTTGT
1 ATGAACTGTTATTTTGC
* *
7304700 ATGAACTATTATTTTTC
1 ATGAACTGTTATTTTGC
7304717 ATGA
1 ATGA
7304721 GTTGTCATTT
Statistics
Matches: 40, Mismatches: 15, Indels: 0
0.73 0.27 0.00
Matches are distributed among these distances:
17 40 1.00
ACGTcount: A:0.28, C:0.10, G:0.15, T:0.47
Consensus pattern (17 bp):
ATGAACTGTTATTTTGC
Found at i:7304712 original size:34 final size:34
Alignment explanation
Indices: 7304647--7304712 Score: 96
Period size: 34 Copynumber: 1.9 Consensus size: 34
7304637 TTATGATGGA
* * *
7304647 GTATGAACTGCTATTTTGCATGAATTTTTATTCG
1 GTATGAACTGATATTTTGCATGAACTATTATTCG
*
7304681 GTATGAACTGATATTTTGTATGAACTATTATT
1 GTATGAACTGATATTTTGCATGAACTATTATT
7304713 TTTCATGAGT
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
34 28 1.00
ACGTcount: A:0.27, C:0.09, G:0.17, T:0.47
Consensus pattern (34 bp):
GTATGAACTGATATTTTGCATGAACTATTATTCG
Found at i:7308211 original size:54 final size:54
Alignment explanation
Indices: 7308018--7308279 Score: 242
Period size: 54 Copynumber: 4.9 Consensus size: 54
7308008 TTTCCTTTTC
* * *
7308018 AAACTTACCATTGCCATGTCTTGACATGGTCTTACGTGGTATCCTTGCCTTAT-
1 AAACTTACCAATGCCATGTCTTGACATGGTCTTACATGATATCCTTGCCTTATA
* * * * * ** *
7308071 GAACTCACCATTGCCATGCCTT-AGCATGGTCGTACATGGGAT-CTTCGCCTTATCG
1 AAACTTACCAATGCCATGTCTTGA-CATGGTCTTACATGATATCCTT-GCCTTAT-A
* ** * * * * *
7308126 TAGTTTATCAATGCCATATCTTAACATGGTCTTACATGATTTCCTTGCCTTGTA
1 AAACTTACCAATGCCATGTCTTGACATGGTCTTACATGATATCCTTGCCTTATA
* * *
7308180 AAACTTACCAATGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCATTGTA
1 AAACTTACCAATGCCATGTCTTGACATGGTCTTACATGATATCCTTGCCTTATA
* * * *
7308234 AAACTTACCAATGCCATGCCTTGCCATGGTCTTACTTGGTATCCTT
1 AAACTTACCAATGCCATGTCTTGACATGGTCTTACATGATATCCTT
7308280 AAACCCTAAT
Statistics
Matches: 171, Mismatches: 32, Indels: 11
0.80 0.15 0.05
Matches are distributed among these distances:
52 4 0.02
53 41 0.24
54 88 0.51
55 34 0.20
56 4 0.02
ACGTcount: A:0.23, C:0.25, G:0.16, T:0.36
Consensus pattern (54 bp):
AAACTTACCAATGCCATGTCTTGACATGGTCTTACATGATATCCTTGCCTTATA
Found at i:7308240 original size:27 final size:27
Alignment explanation
Indices: 7308156--7308241 Score: 65
Period size: 27 Copynumber: 3.2 Consensus size: 27
7308146 TTAACATGGT
*
7308156 CTTACATGATTTCCTTGCCTTGTAAAA
1 CTTACATGATTTCCTTGCATTGTAAAA
* *
7308183 CTTACCAATGCCATGT-CTTGACATGGT----
1 CTTA-C-ATG--ATTTCCTTG-CATTGTAAAA
7308210 CTTACATGATTTCCTTGCATTGTAAAA
1 CTTACATGATTTCCTTGCATTGTAAAA
7308237 CTTAC
1 CTTAC
7308242 CAATGCCATG
Statistics
Matches: 44, Mismatches: 5, Indels: 20
0.64 0.07 0.29
Matches are distributed among these distances:
23 8 0.18
24 4 0.09
25 3 0.07
26 1 0.02
27 13 0.30
28 1 0.02
29 3 0.07
30 4 0.09
31 7 0.16
ACGTcount: A:0.26, C:0.23, G:0.13, T:0.38
Consensus pattern (27 bp):
CTTACATGATTTCCTTGCATTGTAAAA
Found at i:7324981 original size:246 final size:246
Alignment explanation
Indices: 7324544--7325136 Score: 1141
Period size: 246 Copynumber: 2.4 Consensus size: 246
7324534 GGGCGTGTTA
7324544 AGAGGAGTTGGAAAAGTCTTGGGTTCAAACCTGGGCTTTAGCAAAAAGTTTAGTTTTAAGTTAAT
1 AGAGGAGTTGGAAAAGTCTTGGGTTCAAACCTGGGCTTTAGCAAAAAGTTTAGTTTTAAGTTAAT
7324609 AAAACCCTGGGTGCTTGGATGAAGGCTTTTTAAATTTTAAGGGGGTAGATTGTAACGCCCCAAAT
66 AAAACCCTGGGTGCTTGGATGAAGGCTTTTTAAATTTTAAGGGGGTAGATTGTAACGCCCCAAAT
*
7324674 TTGGGCCTAGAAGTATTGGGCCTTTAGTGTGGGTCCGTAAGGAGGTTGTATATAAGTATTTAATT
131 TTGGGCCTAGAAGTATTGGCCCTTTAGTGTGGGTCCGTAAGGAGGTTGTATATAAGTATTTAATT
*
7324739 GTGTCAGGAAATGACACAATTAAATGTCTACTCAAGTAGTTAAGGGTCCTG
196 GTGTAAGGAAATGACACAATTAAATGTCTACTCAAGTAGTTAAGGGTCCTG
*
7324790 AGGGGAGTTGGAAAAGTCTTGGGTTCAAACCTGGGCTTTAGCAAAAAGTTTAGTTTTAAGTTAAT
1 AGAGGAGTTGGAAAAGTCTTGGGTTCAAACCTGGGCTTTAGCAAAAAGTTTAGTTTTAAGTTAAT
7324855 AAAACCCTGGGTGCTTGGATGAAGGCTTTTTAAATTTTAAGGGGGTAGATTGTAACGCCCCAAAT
66 AAAACCCTGGGTGCTTGGATGAAGGCTTTTTAAATTTTAAGGGGGTAGATTGTAACGCCCCAAAT
*
7324920 TTGGGCCTAGAAGTATTGGCCCTTTAGTGTGGGTTCGTAAGGAGGTTGTATATAAGTATTTAATT
131 TTGGGCCTAGAAGTATTGGCCCTTTAGTGTGGGTCCGTAAGGAGGTTGTATATAAGTATTTAATT
7324985 GTGTAAGGAAATGACACAATTAAATGTCTACTCAAGTAGTTAAGGGTCCTG
196 GTGTAAGGAAATGACACAATTAAATGTCTACTCAAGTAGTTAAGGGTCCTG
7325036 AGAGGAGTTGGAAAAGTCTTGGGTTCAAACCTGGGCTTTAGCAAAAAGTTTAGTTTTAAGTTAAT
1 AGAGGAGTTGGAAAAGTCTTGGGTTCAAACCTGGGCTTTAGCAAAAAGTTTAGTTTTAAGTTAAT
*
7325101 AAAACCCTGGGTGCTTGGATGAAGGCCTTTTAAATT
66 AAAACCCTGGGTGCTTGGATGAAGGCTTTTTAAATT
7325137 ATTGTGGTAG
Statistics
Matches: 341, Mismatches: 6, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
246 341 1.00
ACGTcount: A:0.30, C:0.12, G:0.27, T:0.32
Consensus pattern (246 bp):
AGAGGAGTTGGAAAAGTCTTGGGTTCAAACCTGGGCTTTAGCAAAAAGTTTAGTTTTAAGTTAAT
AAAACCCTGGGTGCTTGGATGAAGGCTTTTTAAATTTTAAGGGGGTAGATTGTAACGCCCCAAAT
TTGGGCCTAGAAGTATTGGCCCTTTAGTGTGGGTCCGTAAGGAGGTTGTATATAAGTATTTAATT
GTGTAAGGAAATGACACAATTAAATGTCTACTCAAGTAGTTAAGGGTCCTG
Found at i:7329820 original size:78 final size:78
Alignment explanation
Indices: 7329690--7329849 Score: 232
Period size: 78 Copynumber: 2.1 Consensus size: 78
7329680 GATGGAGACT
* * *
7329690 AGTGTGGGGAGTGTAGATGATCAAAAACTGAAGTATAAGAGCTACAAAAAATTTCACTTCGGTGA
1 AGTGTGGAGAGTGTAGATGATCAAAAACTAAAGTATAAGAGCTACAAAAAATTTCACTTCAGTGA
*
7329755 GTACCGAATGAAG
66 GTACCAAATGAAG
* *
7329768 AGTGTGGAGAGTGTAGATGATCAAAAA-TCAAAGTGTAAGAGCTACAACAAATTTCACTTCAGTG
1 AGTGTGGAGAGTGTAGATGATCAAAAACT-AAAGTATAAGAGCTACAAAAAATTTCACTTCAGTG
* *
7329832 AGTGCTAAATGAAG
65 AGTACCAAATGAAG
7329846 AGTG
1 AGTG
7329850 GTGCGTGTTT
Statistics
Matches: 73, Mismatches: 8, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
77 1 0.01
78 72 0.99
ACGTcount: A:0.39, C:0.11, G:0.26, T:0.24
Consensus pattern (78 bp):
AGTGTGGAGAGTGTAGATGATCAAAAACTAAAGTATAAGAGCTACAAAAAATTTCACTTCAGTGA
GTACCAAATGAAG
Found at i:7330403 original size:13 final size:13
Alignment explanation
Indices: 7330385--7330410 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
7330375 TCATGATGTA
7330385 ACTGTGAATTGTG
1 ACTGTGAATTGTG
7330398 ACTGTGAATTGTG
1 ACTGTGAATTGTG
7330411 GTAGTAAGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.23, C:0.08, G:0.31, T:0.38
Consensus pattern (13 bp):
ACTGTGAATTGTG
Found at i:7332687 original size:51 final size:49
Alignment explanation
Indices: 7332559--7332705 Score: 177
Period size: 49 Copynumber: 3.0 Consensus size: 49
7332549 GTAGCCAAAG
* * *
7332559 TTATCTGGTACGCATAGTAGCCTGCACATAGTACTACACATGCGACCAA
1 TTATCCGGTACGCATAGTAGCCTGCACTTAGTACTACACATGTGACCAA
* * * *
7332608 TTATCCGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGATCACAG
1 TTATCCGGTACGCATAGTAGCCTGCACTTAGTACTACACATGTGA-C-CAA
* * * *
7332659 TTTTCGGGTACGTATAGTAGCCTACACTTAGTACTACACATGTGACC
1 TTATCCGGTACGCATAGTAGCCTGCACTTAGTACTACACATGTGACC
7332706 TCACAATAGA
Statistics
Matches: 82, Mismatches: 14, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
49 40 0.49
50 2 0.02
51 40 0.49
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.27
Consensus pattern (49 bp):
TTATCCGGTACGCATAGTAGCCTGCACTTAGTACTACACATGTGACCAA
Found at i:7334881 original size:30 final size:30
Alignment explanation
Indices: 7334837--7334905 Score: 88
Period size: 30 Copynumber: 2.3 Consensus size: 30
7334827 TAAAGATAAC
* *
7334837 AAGAAAACC-GAATAAATAAATCCA-AGATA
1 AAGAAACCCAGAATAAAGAAATCCAGAG-TA
*
7334866 GAGAAACCCAGAATAAAGAAATCCAGAGTA
1 AAGAAACCCAGAATAAAGAAATCCAGAGTA
7334896 AAGAAACCCA
1 AAGAAACCCA
7334906 AGATACGATA
Statistics
Matches: 34, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
29 7 0.21
30 25 0.74
31 2 0.06
ACGTcount: A:0.58, C:0.17, G:0.14, T:0.10
Consensus pattern (30 bp):
AAGAAACCCAGAATAAAGAAATCCAGAGTA
Found at i:7334891 original size:15 final size:15
Alignment explanation
Indices: 7334837--7334901 Score: 62
Period size: 15 Copynumber: 4.4 Consensus size: 15
7334827 TAAAGATAAC
*
7334837 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
*
7334851 AATAAATCCA-AGATA
1 AAGAAATCCAGA-ATA
* *
7334866 GAGAAACCCAGAATA
1 AAGAAATCCAGAATA
*
7334881 AAGAAATCCAGAGTA
1 AAGAAATCCAGAATA
7334896 AAGAAA
1 AAGAAA
7334902 CCCAAGATAC
Statistics
Matches: 40, Mismatches: 8, Indels: 5
0.75 0.15 0.09
Matches are distributed among these distances:
14 8 0.20
15 31 0.77
16 1 0.03
ACGTcount: A:0.60, C:0.14, G:0.15, T:0.11
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:7338080 original size:50 final size:49
Alignment explanation
Indices: 7337913--7338137 Score: 283
Period size: 49 Copynumber: 4.5 Consensus size: 49
7337903 CAGGTACGCA
* * *
7337913 TAGTAGCCTGCACATAGTACTACACATGCGACCAATTATCCGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCCGGTACACG
7337962 TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCCGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCCGGTACACG
** * *
7338011 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATCTGATACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACC-AATTATCCGGTACACG
* * * *
7338061 TAGTAGCTTGCACTTAGTACTACACACGTGATCACAGTTTTCGGGTA-A-G
1 TAGTAGCCTGCACTTAGTACTACACACGTGA-C-CAATTATCCGGTACACG
*
7338110 TATAGTAGCCTACACTTAGTACTACACA
1 --TAGTAGCCTGCACTTAGTACTACACA
7338138 TGCGACCTCA
Statistics
Matches: 155, Mismatches: 16, Indels: 8
0.87 0.09 0.04
Matches are distributed among these distances:
49 80 0.52
50 43 0.28
51 31 0.20
52 1 0.01
ACGTcount: A:0.30, C:0.27, G:0.18, T:0.26
Consensus pattern (49 bp):
TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCCGGTACACG
Found at i:7338085 original size:99 final size:99
Alignment explanation
Indices: 7337912--7338144 Score: 292
Period size: 99 Copynumber: 2.3 Consensus size: 99
7337902 TCAGGTACGC
* * ** *
7337912 ATAGTAGCCTGCACATAGTACTACACATGCGACCAATTATCCGGTACACGTAGTAGCCTGCACTT
1 ATAGTAGCCTGCACTTAGTACTACACACGCGACCAACCATCCGATACACGTAGTAGCCTGCACTT
7337977 AGTACTACACACGTGA-C-CAATTATCCGGTACACG
66 AGTACTACACACGTGATCACAATTATCCGGTA-A-G
* * *
7338011 -TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATCTGATACACGTAGTAGCTTGCACT
1 ATAGTAGCCTGCACTTAGTACTACACACGCGACC-AACCATCCGATACACGTAGTAGCCTGCACT
* * *
7338075 TAGTACTACACACGTGATCACAGTTTTCGGGTAAG
65 TAGTACTACACACGTGATCACAATTATCCGGTAAG
* *
7338110 TATAGTAGCCTACACTTAGTACTACACATGCGACC
1 -ATAGTAGCCTGCACTTAGTACTACACACGCGACC
7338145 TCACAATAGA
Statistics
Matches: 115, Mismatches: 14, Indels: 8
0.84 0.10 0.06
Matches are distributed among these distances:
98 30 0.26
99 43 0.37
100 2 0.02
101 40 0.35
ACGTcount: A:0.30, C:0.27, G:0.18, T:0.25
Consensus pattern (99 bp):
ATAGTAGCCTGCACTTAGTACTACACACGCGACCAACCATCCGATACACGTAGTAGCCTGCACTT
AGTACTACACACGTGATCACAATTATCCGGTAAG
Found at i:7353625 original size:46 final size:46
Alignment explanation
Indices: 7353563--7353735 Score: 131
Period size: 46 Copynumber: 3.7 Consensus size: 46
7353553 TTGGGCATCC
*
7353563 GAACTCATTGAGTTGAGTCTGAGTTCACTTATGGATGCGGACGTCT
1 GAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGGACGTCT
* * * * *
7353609 GAACTCGTTGAATTGAGTCCGAG-TC-C--GTGAGATGTAACTAGG-CATCC
1 GAACTCATTGAGTTGAGTCCGAGTTCACTTATG-GATG---C--GGACGTCT
* * * * *
7353656 GAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGAATGCGAACGCCT
1 GAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGGACGTCT
* * *
7353702 GAGCTCATTGAGTTGAGTCTGAGTTCGCTTATGG
1 GAACTCATTGAGTTGAGTCCGAGTTCACTTATGG
7353736 GCGGGTTACA
Statistics
Matches: 98, Mismatches: 18, Indels: 22
0.71 0.13 0.16
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 1 0.01
45 3 0.03
46 53 0.54
47 25 0.26
48 4 0.04
49 1 0.01
50 3 0.03
51 2 0.02
ACGTcount: A:0.22, C:0.19, G:0.29, T:0.30
Consensus pattern (46 bp):
GAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGGACGTCT
Found at i:7353718 original size:93 final size:93
Alignment explanation
Indices: 7353556--7353725 Score: 250
Period size: 93 Copynumber: 1.8 Consensus size: 93
7353546 CGGATATTTG
* * * * *
7353556 GGCATCCGAACTCATTGAGTTGAGTCTGAGTTCACTTATGGATGCGGACGTCTGAACTCGTTGAA
1 GGCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGAATGCGAACGCCTGAACTCATTGAA
7353621 TTGAGTCCGAGTCCGTGAGATGTAACTA
66 TTGAGTCCGAGTCCGTGAGATGTAACTA
* * * *
7353649 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGAATGCGAACGCCTGAGCTCATTGAG
1 GGCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGAATGCGAACGCCTGAACTCATTGAA
*
7353714 TTGAGTCTGAGT
66 TTGAGTCCGAGT
7353726 TCGCTTATGG
Statistics
Matches: 67, Mismatches: 10, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
93 67 1.00
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.29
Consensus pattern (93 bp):
GGCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGAATGCGAACGCCTGAACTCATTGAA
TTGAGTCCGAGTCCGTGAGATGTAACTA
Found at i:7360862 original size:41 final size:40
Alignment explanation
Indices: 7360785--7360970 Score: 182
Period size: 41 Copynumber: 4.7 Consensus size: 40
7360775 GCTACTCGTT
* * *
7360785 CAAATGCCTTCGGGACATAGCCCGG-TTAAAGCAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
* *
7360825 CAAAATTCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 C-AAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * *
7360866 CCAATGCCTTTGGG-CTTAGCCCGGAATTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * * * *
7360905 CAAATGCCTTC-GGATCTTAGTCCAGATATAGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
*
7360946 CAAA-GCCTTCGGGACTTAGCTCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
7360971 CATCATTCGA
Statistics
Matches: 119, Mismatches: 21, Indels: 12
0.78 0.14 0.08
Matches are distributed among these distances:
38 2 0.02
39 32 0.27
40 40 0.34
41 43 0.36
42 2 0.02
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:7360896 original size:39 final size:40
Alignment explanation
Indices: 7360785--7360917 Score: 146
Period size: 39 Copynumber: 3.3 Consensus size: 40
7360775 GCTACTCGTT
* * *
7360785 CAAATGCCTTCGGGACATAGCCCGG--TTAAAGCAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGAATT--AGTAACTCGCA
* *
7360825 CAAAATTCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 C-AAATGCCTTCGGGACTTAACCCGGAATTAGTAACTCGCA
* * *
7360866 CCAATGCCTTTGGG-CTTAGCCCGGAATTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGAATTAGTAACTCGCA
7360905 CAAATGCCTTCGG
1 CAAATGCCTTCGG
7360918 ATCTTAGTCC
Statistics
Matches: 79, Mismatches: 11, Indels: 7
0.81 0.11 0.07
Matches are distributed among these distances:
39 34 0.43
40 11 0.14
41 32 0.41
43 2 0.03
ACGTcount: A:0.27, C:0.29, G:0.21, T:0.23
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGAATTAGTAACTCGCA
Found at i:7360964 original size:80 final size:81
Alignment explanation
Indices: 7360785--7360970 Score: 177
Period size: 79 Copynumber: 2.3 Consensus size: 81
7360775 GCTACTCGTT
* *
7360785 CAAATGCCTTCGGGACATAGCCCGG-TTAAAGCAACTCGCACAAAATTCCTTCGGGACTTAACCC
1 CAAA-GCCTTCGGGACTTAGCCCGGATT-AAGCAACTCGCACAAAATGCCTTCGGGACTTAACCC
* * *
7360849 GGATTTAGTAACTCGCAC
64 AGATATAGTAACTAGCAC
* * * **
7360867 CAATGCCTTTGGG-CTTAGCCCGGAATT-AGTAACTCGCAC-AAATGCCTTC-GGATCTTAGTCC
1 CAAAGCCTTCGGGACTTAGCCCGG-ATTAAGCAACTCGCACAAAATGCCTTCGGGA-CTTAACCC
*
7360928 AGATATAGTCACTTAGCA-
64 AGATATAGTAAC-TAGCAC
*
7360946 CAAAGCCTTCGGGACTTAGCTCGGA
1 CAAAGCCTTCGGGACTTAGCCCGGA
7360971 CATCATTCGA
Statistics
Matches: 85, Mismatches: 14, Indels: 13
0.76 0.12 0.12
Matches are distributed among these distances:
78 3 0.04
79 36 0.42
80 33 0.39
81 8 0.09
82 5 0.06
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.24
Consensus pattern (81 bp):
CAAAGCCTTCGGGACTTAGCCCGGATTAAGCAACTCGCACAAAATGCCTTCGGGACTTAACCCAG
ATATAGTAACTAGCAC
Found at i:7366688 original size:17 final size:17
Alignment explanation
Indices: 7366666--7366705 Score: 53
Period size: 17 Copynumber: 2.4 Consensus size: 17
7366656 GTGTTCATTA
7366666 GAAAACCATGACAATTT
1 GAAAACCATGACAATTT
* **
7366683 GAAAACCGTGATGATTT
1 GAAAACCATGACAATTT
7366700 GAAAAC
1 GAAAAC
7366706 TCATTTTCCC
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.45, C:0.15, G:0.17, T:0.23
Consensus pattern (17 bp):
GAAAACCATGACAATTT
Found at i:7372518 original size:48 final size:48
Alignment explanation
Indices: 7372447--7372647 Score: 257
Period size: 48 Copynumber: 4.2 Consensus size: 48
7372437 AGCATGATAT
* *
7372447 ATGATATGTGTGCCA-ATGTAAGACCATGTCTAGGACATGGAATTGGCG
1 ATGATATGTGTGCCAGA-GTAAGACCATGTCTAGGACATGGCATCGGCG
*
7372495 ATGATATGTGTGCCAGAGTAAGACCATGTCT-GCGACATGGCATCGACG
1 ATGATATGTGTGCCAGAGTAAGACCATGTCTAG-GACATGGCATCGGCG
* *
7372543 ATGATATGTGTGCCAGTGTAAGACCATGTCTAGGACA-GGCATCGGTG
1 ATGATATGTGTGCCAGAGTAAGACCATGTCTAGGACATGGCATCGGCG
* * * * *
7372590 ATGATATGTGTGCCAGTGTAATACCATGT-TCGGGACATGGCATCAGTG
1 ATGATATGTGTGCCAGAGTAAGACCATGTCT-AGGACATGGCATCGGCG
7372638 ATGATATGTG
1 ATGATATGTG
7372648 GATTCATGTA
Statistics
Matches: 139, Mismatches: 9, Indels: 10
0.88 0.06 0.06
Matches are distributed among these distances:
46 1 0.01
47 42 0.30
48 94 0.68
49 2 0.01
ACGTcount: A:0.27, C:0.16, G:0.30, T:0.27
Consensus pattern (48 bp):
ATGATATGTGTGCCAGAGTAAGACCATGTCTAGGACATGGCATCGGCG
Found at i:7372641 original size:95 final size:96
Alignment explanation
Indices: 7372447--7372647 Score: 291
Period size: 95 Copynumber: 2.1 Consensus size: 96
7372437 AGCATGATAT
*
7372447 ATGATATGTGTGCCAATGTAAGACCATGTCTAGGACATGGAATTGGCGATGATATGTGTGCCAGA
1 ATGATATGTGTGCCAATGTAAGACCATGTCTAGGACATGGAATCGGCGATGATATGTGTGCCAGA
7372512 GTAAGACCATGTCTGCGACATGGCATCGACG
66 GTAAGACCATGTCTGCGACATGGCATCGACG
* * * *
7372543 ATGATATGTGTGCCAGTGTAAGACCATGTCTAGGACA-GGCATCGGTGATGATATGTGTGCCAGT
1 ATGATATGTGTGCCAATGTAAGACCATGTCTAGGACATGGAATCGGCGATGATATGTGTGCCAGA
* * *
7372607 GTAATACCATGT-TCGGGACATGGCATC-AGTG
66 GTAAGACCATGTCT-GCGACATGGCATCGA-CG
7372638 ATGATATGTG
1 ATGATATGTG
7372648 GATTCATGTA
Statistics
Matches: 95, Mismatches: 8, Indels: 5
0.88 0.07 0.05
Matches are distributed among these distances:
94 2 0.02
95 57 0.60
96 36 0.38
ACGTcount: A:0.27, C:0.16, G:0.30, T:0.27
Consensus pattern (96 bp):
ATGATATGTGTGCCAATGTAAGACCATGTCTAGGACATGGAATCGGCGATGATATGTGTGCCAGA
GTAAGACCATGTCTGCGACATGGCATCGACG
Found at i:7372674 original size:95 final size:95
Alignment explanation
Indices: 7372447--7372674 Score: 239
Period size: 95 Copynumber: 2.4 Consensus size: 95
7372437 AGCATGATAT
* * ** * * *
7372447 ATGATATGTGTGCCAATGTAAGACCATGTCTAGGACATGGAATTGGCGATGATATGTGTGCCAGA
1 ATGATATGTGTGCCAGTGTAAGACCATATAGAGGACA-GGCATCGGTGATGATATGTGTGCCAGA
7372512 GTAAGACCATGTCTGCGACATGGCATCGACG
65 GTAAGACCATGTCTGCGACATGGCATCGACG
* ** *
7372543 ATGATATGTGTGCCAGTGTAAGACCATGTCTAGGACAGGCATCGGTGATGATATGTGTGCCAGTG
1 ATGATATGTGTGCCAGTGTAAGACCATATAGAGGACAGGCATCGGTGATGATATGTGTGCCAGAG
* * *
7372608 TAATACCATGT-TCGGGACATGGCATC-AGTG
66 TAAGACCATGTCT-GCGACATGGCATCGA-CG
* *
7372638 ATGATATGTG-GATTCA-TGTAAGACCATATAGGGGACA
1 ATGATATGTGTG--CCAGTGTAAGACCATATAGAGGACA
7372675 TGGAATTAGT
Statistics
Matches: 115, Mismatches: 13, Indels: 9
0.84 0.09 0.07
Matches are distributed among these distances:
94 3 0.03
95 74 0.64
96 38 0.33
ACGTcount: A:0.28, C:0.16, G:0.29, T:0.26
Consensus pattern (95 bp):
ATGATATGTGTGCCAGTGTAAGACCATATAGAGGACAGGCATCGGTGATGATATGTGTGCCAGAG
TAAGACCATGTCTGCGACATGGCATCGACG
Found at i:7374591 original size:31 final size:32
Alignment explanation
Indices: 7374541--7374601 Score: 97
Period size: 31 Copynumber: 1.9 Consensus size: 32
7374531 GACATAGGAT
* *
7374541 TTCGATATGTGATGTGCGAGTAAGATCATGGA
1 TTCGATATATGATGTGCGAGTAAGACCATGGA
7374573 TTCGATATATG-TGTGCGAGTAAGACCATG
1 TTCGATATATGATGTGCGAGTAAGACCATG
7374602 TTTTATATGT
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
31 17 0.63
32 10 0.37
ACGTcount: A:0.28, C:0.11, G:0.30, T:0.31
Consensus pattern (32 bp):
TTCGATATATGATGTGCGAGTAAGACCATGGA
Found at i:7378390 original size:43 final size:43
Alignment explanation
Indices: 7378343--7378447 Score: 131
Period size: 43 Copynumber: 2.4 Consensus size: 43
7378333 TAGCCCAGCT
7378343 ATGGTCTTACACAAAAT-AAATTAACAATGCCAATGTCCTAGAC
1 ATGGTCTTACACAAAATCAAA-TAACAATGCCAATGTCCTAGAC
** * ** *
7378386 ATGGTCTTACACGTAATCACATAATGATTCCAATGTCCTAGAC
1 ATGGTCTTACACAAAATCAAATAACAATGCCAATGTCCTAGAC
*
7378429 ATGGTCTTACACATAATCA
1 ATGGTCTTACACAAAATCA
7378448 CATCTCGATA
Statistics
Matches: 54, Mismatches: 7, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
43 52 0.96
44 2 0.04
ACGTcount: A:0.37, C:0.22, G:0.12, T:0.29
Consensus pattern (43 bp):
ATGGTCTTACACAAAATCAAATAACAATGCCAATGTCCTAGAC
Found at i:7381890 original size:40 final size:40
Alignment explanation
Indices: 7381708--7381930 Score: 236
Period size: 40 Copynumber: 5.6 Consensus size: 40
7381698 TCCTCGTTCA
* * * * *
7381708 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* *
7381747 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
7381787 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * *
7381827 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* ** * * * *
7381867 AAGGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCAC-
1 AATGCCTTCGGGA-CTTAACCCGGATTTAATAAC-TCGCACG
* *
7381907 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
7381931 CAGCATTCAA
Statistics
Matches: 160, Mismatches: 20, Indels: 7
0.86 0.11 0.04
Matches are distributed among these distances:
39 37 0.23
40 115 0.72
41 8 0.05
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:7381939 original size:41 final size:41
Alignment explanation
Indices: 7381862--7381939 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
7381852 TTAGTATCTC
* * *
7381862 GCACAAAGGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAAGGCCTTCGGATCTTAGCCCGGACACATTCACTTA
7381903 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAAGGCCTTC-GGATCTTAGCCCGGACA-CATTCA
7381940 ATTAAACATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.23
Consensus pattern (41 bp):
GCACAAAGGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:7393534 original size:22 final size:23
Alignment explanation
Indices: 7393476--7393525 Score: 82
Period size: 23 Copynumber: 2.1 Consensus size: 23
7393466 GAATAGAGAT
*
7393476 AGACAACAACATAAAAAAAAAGA
1 AGACAACAACATAAAAAAAAAAA
7393499 AGACAACAACATAAAAAAAAGAAA
1 AGACAACAACATAAAAAAAA-AAA
7393523 AGA
1 AGA
7393526 AAGAAATAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
23 20 0.80
24 5 0.20
ACGTcount: A:0.74, C:0.12, G:0.10, T:0.04
Consensus pattern (23 bp):
AGACAACAACATAAAAAAAAAAA
Found at i:7400323 original size:46 final size:47
Alignment explanation
Indices: 7400251--7400343 Score: 179
Period size: 46 Copynumber: 2.0 Consensus size: 47
7400241 AATCGAGCAA
7400251 AGGCAAAGAAAAGGGTTATCGAGTAGTCGAGTTGGAACCGTCTTACC
1 AGGCAAAGAAAAGGGTTATCGAGTAGTCGAGTTGGAACCGTCTTACC
7400298 AGGCAAAGAAAA-GGTTATCGAGTAGTCGAGTTGGAACCGTCTTACC
1 AGGCAAAGAAAAGGGTTATCGAGTAGTCGAGTTGGAACCGTCTTACC
7400344 CAACACGAGG
Statistics
Matches: 46, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
46 34 0.74
47 12 0.26
ACGTcount: A:0.32, C:0.17, G:0.29, T:0.22
Consensus pattern (47 bp):
AGGCAAAGAAAAGGGTTATCGAGTAGTCGAGTTGGAACCGTCTTACC
Found at i:7400622 original size:27 final size:27
Alignment explanation
Indices: 7400591--7400768 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
7400581 TAAATTGTAC
7400591 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
7400618 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
7400644 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
7400672 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
7400700 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
7400727 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
7400754 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
7400769 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:7400705 original size:82 final size:81
Alignment explanation
Indices: 7400592--7400747 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
7400582 AAATTGTACA
* *
7400592 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
7400656 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
7400673 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
7400738 TGCGAGTTGA
65 TGCGAATTGA
7400748 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:7400759 original size:82 final size:81
Alignment explanation
Indices: 7400588--7400768 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
7400578 GATTAAATTG
* *
7400588 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
7400653 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
7400669 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
7400733 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
7400751 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
7400769 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:7406298 original size:50 final size:50
Alignment explanation
Indices: 7406218--7406317 Score: 191
Period size: 50 Copynumber: 2.0 Consensus size: 50
7406208 GATATGCTGA
7406218 GATGCTGCATCCTTGAGTTTAGTGGTTCATGGGAACGGTATGTACCTTTG
1 GATGCTGCATCCTTGAGTTTAGTGGTTCATGGGAACGGTATGTACCTTTG
*
7406268 GATGTTGCATCCTTGAGTTTAGTGGTTCATGGGAACGGTATGTACCTTTG
1 GATGCTGCATCCTTGAGTTTAGTGGTTCATGGGAACGGTATGTACCTTTG
7406318 ATCGAATTCG
Statistics
Matches: 49, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
50 49 1.00
ACGTcount: A:0.18, C:0.15, G:0.30, T:0.37
Consensus pattern (50 bp):
GATGCTGCATCCTTGAGTTTAGTGGTTCATGGGAACGGTATGTACCTTTG
Found at i:7407328 original size:61 final size:61
Alignment explanation
Indices: 7407233--7407355 Score: 237
Period size: 61 Copynumber: 2.0 Consensus size: 61
7407223 ATTGTGAATT
7407233 AATTCAAAAAGGACCTAGTTGACGAAGTTAGAAAAGATGATAGATAAATTATAAGGATTAA
1 AATTCAAAAAGGACCTAGTTGACGAAGTTAGAAAAGATGATAGATAAATTATAAGGATTAA
*
7407294 AATTCAAAAAGGACCTAGTTGACGAAGTTAGAAAAGATGATAGATGAATTATAAGGATTAA
1 AATTCAAAAAGGACCTAGTTGACGAAGTTAGAAAAGATGATAGATAAATTATAAGGATTAA
7407355 A
1 A
7407356 TAATAACAAG
Statistics
Matches: 61, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
61 61 1.00
ACGTcount: A:0.49, C:0.07, G:0.20, T:0.24
Consensus pattern (61 bp):
AATTCAAAAAGGACCTAGTTGACGAAGTTAGAAAAGATGATAGATAAATTATAAGGATTAA
Found at i:7408861 original size:27 final size:26
Alignment explanation
Indices: 7408831--7409007 Score: 158
Period size: 27 Copynumber: 6.5 Consensus size: 26
7408821 AAATTGTACA
* *
7408831 GCACTAAGGGTGCGATTCGACTATGTT
1 GCACTAAGTGTGCGATT-GACTATGTG
* *
7408858 GCACTAAGTGTGCGAAATGAATATGAT-
1 GCACTAAGTGTGCG-ATTGACTATG-TG
* *
7408885 GCACTAAGTGTGCGAATTGACCATGCG
1 GCACTAAGTGTGCG-ATTGACTATGTG
7408912 GCACTAAGTGTGCGAGTTGGACTATGTG
1 GCACTAAGTGTGCGA-TT-GACTATGTG
* * *
7408940 GCACTAAGTGTGCGATTTGATTACGTA
1 GCACTAAGTGTGCGA-TTGACTATGTG
* * *
7408967 GCACTAAGTGTGCGAGTTGATTATATA
1 GCACTAAGTGTGCGA-TTGACTATGTG
*
7408994 GCACTGAGTGTGCG
1 GCACTAAGTGTGCG
7409008 GGCTCAATAA
Statistics
Matches: 128, Mismatches: 17, Indels: 10
0.83 0.11 0.06
Matches are distributed among these distances:
26 1 0.01
27 100 0.78
28 27 0.21
ACGTcount: A:0.26, C:0.16, G:0.30, T:0.28
Consensus pattern (26 bp):
GCACTAAGTGTGCGATTGACTATGTG
Found at i:7408945 original size:82 final size:81
Alignment explanation
Indices: 7408831--7408986 Score: 215
Period size: 82 Copynumber: 1.9 Consensus size: 81
7408821 AAATTGTACA
* *
7408831 GCACTAAGGGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGGGTGCGATTCGACTATGTGGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
7408895 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
* * ** *
7408912 GCACTAAGTGTGCGAGTTGGACTATGTGGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGGGTGCGA-TTCGACTATGTGGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
7408977 TGCGAGTTGA
65 TGCGAATTGA
7408987 TTATATAGCA
Statistics
Matches: 65, Mismatches: 8, Indels: 3
0.86 0.11 0.04
Matches are distributed among these distances:
81 14 0.22
82 50 0.77
83 1 0.02
ACGTcount: A:0.26, C:0.16, G:0.30, T:0.28
Consensus pattern (81 bp):
GCACTAAGGGTGCGATTCGACTATGTGGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:7408998 original size:82 final size:81
Alignment explanation
Indices: 7408827--7409007 Score: 211
Period size: 82 Copynumber: 2.2 Consensus size: 81
7408817 GATTAAATTG
* * *
7408827 TACAGCACTAAGGGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTCGACTATGTGGCACTAAGTGTGCGAAATGAATACGATGCACTAA
7408892 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * * ** *
7408908 TGCGGCACTAAGTGTGCGAGTTGGACTATGTGGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTCGACTATGTGGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
7408972 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
7408990 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
7409008 GGCTCAATAA
Statistics
Matches: 82, Mismatches: 16, Indels: 3
0.81 0.16 0.03
Matches are distributed among these distances:
81 17 0.21
82 65 0.79
ACGTcount: A:0.27, C:0.16, G:0.29, T:0.28
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTCGACTATGTGGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:7410165 original size:109 final size:109
Alignment explanation
Indices: 7409965--7410186 Score: 390
Period size: 109 Copynumber: 2.0 Consensus size: 109
7409955 GATAATTAGG
* *
7409965 GGTCTTACCATATATGTACAGATTCCTCTCTGAGTCTAGTTTTCATAGAAACAAACGGCATCAGT
1 GGTCGTACAATATATGTACAGATTCCTCTCTGAGTCTAGTTTTCATAGAAACAAACGGCATCAGT
* **
7410030 ATTGGAGCCTCGTGCAGGGAGATATCCAAGTCGTAATGGGCAAA
66 ATTGGAGCCCCGTGCAGGGAGATATCCAAGTCGTAATGCACAAA
7410074 GGTCGTACAATATATGTACAGATTCCTCTCTGAGTCTAGTTTTCATAGAAACAAACGGCATCAGT
1 GGTCGTACAATATATGTACAGATTCCTCTCTGAGTCTAGTTTTCATAGAAACAAACGGCATCAGT
*
7410139 ATTGGAGCCCCGTGCCGGGAGATATCCAAGTCGTAATGCACAAA
66 ATTGGAGCCCCGTGCAGGGAGATATCCAAGTCGTAATGCACAAA
7410183 GGTC
1 GGTC
7410187 AATGTAGTCG
Statistics
Matches: 107, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
109 107 1.00
ACGTcount: A:0.29, C:0.21, G:0.23, T:0.27
Consensus pattern (109 bp):
GGTCGTACAATATATGTACAGATTCCTCTCTGAGTCTAGTTTTCATAGAAACAAACGGCATCAGT
ATTGGAGCCCCGTGCAGGGAGATATCCAAGTCGTAATGCACAAA
Found at i:7413154 original size:15 final size:17
Alignment explanation
Indices: 7413134--7413166 Score: 52
Period size: 15 Copynumber: 2.1 Consensus size: 17
7413124 GTAATAGGCT
7413134 TTTGTAT-TT-ATATGA
1 TTTGTATATTGATATGA
7413149 TTTGTATATTGATATGA
1 TTTGTATATTGATATGA
7413166 T
1 T
7413167 CAATTGTTTA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 7 0.44
16 2 0.12
17 7 0.44
ACGTcount: A:0.27, C:0.00, G:0.15, T:0.58
Consensus pattern (17 bp):
TTTGTATATTGATATGA
Found at i:7413261 original size:27 final size:27
Alignment explanation
Indices: 7413231--7413284 Score: 99
Period size: 27 Copynumber: 2.0 Consensus size: 27
7413221 ACTAAGCTTT
7413231 ATAGCTTACATTGTTTATTTTTCTGTG
1 ATAGCTTACATTGTTTATTTTTCTGTG
*
7413258 ATAGCTTACATTGTTTATTTTTTTGTG
1 ATAGCTTACATTGTTTATTTTTCTGTG
7413285 TTTTATAGTG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.19, C:0.09, G:0.15, T:0.57
Consensus pattern (27 bp):
ATAGCTTACATTGTTTATTTTTCTGTG
Found at i:7421789 original size:47 final size:47
Alignment explanation
Indices: 7421715--7421979 Score: 159
Period size: 47 Copynumber: 5.6 Consensus size: 47
7421705 GGTACGATGC
* * *
7421715 CGATGCCGTGTTCCATACATGGTCTTACACTGGCTCACACATCTAAGT
1 CGATGCCATGTCCCAGACA-GGTCTTACACTGGCTCACACATCTAAGT
* * ***
7421763 CGATGTCATGTCCCAGACAGGTCTTACACTGGCTCTCATCTATCGGTGT
1 CGATGCCATGTCCCAGACAGGTCTTACACTGGCTCACA-C-ATCTAAGT
* * * * * *
7421812 CGATGCCATGTCCCAGATAGGGCTTGCAC-AG---ACACATGTCAAGC
1 CGATGCCATGTCCCAGACAGGTCTTACACTGGCTCACACATCT-AAGT
* * * * **
7421856 CGATGCCATGTCCCAAACATGTTTTACACTAGCT--TTCATCTTAATGT
1 CGATGCCATGTCCCAGACAGGTCTTACACTGGCTCACACATC-TAA-GT
* * * * * *
7421903 TGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGT-GGC
1 CGATGCCATGTCCCAGACA-GGTCTTACACTGGCTCACA-CATCTAAGT
*
7421951 CGATG-CATGTCCCAGACATGTCTTACACT
1 CGATGCCATGTCCCAGACAGGTCTTACACT
7421980 AGCATACATC
Statistics
Matches: 163, Mismatches: 42, Indels: 26
0.71 0.18 0.11
Matches are distributed among these distances:
43 2 0.01
44 25 0.15
45 4 0.02
46 15 0.09
47 50 0.31
48 34 0.21
49 30 0.18
50 1 0.01
51 2 0.01
ACGTcount: A:0.23, C:0.28, G:0.20, T:0.29
Consensus pattern (47 bp):
CGATGCCATGTCCCAGACAGGTCTTACACTGGCTCACACATCTAAGT
Found at i:7424856 original size:27 final size:27
Alignment explanation
Indices: 7424807--7424859 Score: 61
Period size: 27 Copynumber: 2.0 Consensus size: 27
7424797 CAAATTATTG
* * *
7424807 AAATACCCTCAAATTGTAAAATTACCA
1 AAATACCCTCGATTTATAAAATTACCA
* *
7424834 AAGTACCCTCGATTTATAGAATTACC
1 AAATACCCTCGATTTATAAAATTACC
7424860 GTTTTATGCT
Statistics
Matches: 21, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
27 21 1.00
ACGTcount: A:0.42, C:0.23, G:0.08, T:0.28
Consensus pattern (27 bp):
AAATACCCTCGATTTATAAAATTACCA
Found at i:7424967 original size:27 final size:27
Alignment explanation
Indices: 7424837--7424967 Score: 181
Period size: 27 Copynumber: 4.9 Consensus size: 27
7424827 ATTACCAAAG
*
7424837 TACCCTCGATTTATAGAATTACCGTTT
1 TACCCTCGATTTATAGAATTACTGTTT
** *
7424864 TATGCTCGATTTATAGAATTACCGTTT
1 TACCCTCGATTTATAGAATTACTGTTT
*
7424891 TACCCTCAATTTATAGAATTACTGTTT
1 TACCCTCGATTTATAGAATTACTGTTT
* *
7424918 TACCCTTGATTTACAGAATTACTGTTT
1 TACCCTCGATTTATAGAATTACTGTTT
* *
7424945 TACCCTCGATTTACAAAATTACT
1 TACCCTCGATTTATAGAATTACT
7424968 AAAATACCAT
Statistics
Matches: 93, Mismatches: 11, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 93 1.00
ACGTcount: A:0.28, C:0.20, G:0.10, T:0.42
Consensus pattern (27 bp):
TACCCTCGATTTATAGAATTACTGTTT
Found at i:7424975 original size:27 final size:27
Alignment explanation
Indices: 7424945--7425219 Score: 220
Period size: 27 Copynumber: 10.2 Consensus size: 27
7424935 ATTACTGTTT
* *
7424945 TACCCTCGATTTACAAAATTACTAAAA
1 TACCCTCGATTTATAAAATTACCAAAA
* * *
7424972 TACCATCGGTTTACAAAATTACCAAAA
1 TACCCTCGATTTATAAAATTACCAAAA
7424999 TACCCTCGA-TTAGTAAAATTACCAAAA
1 TACCCTCGATTTA-TAAAATTACCAAAA
* * * * *
7425026 TACCCTAG-TCTGTAAAATTGCTAAAA
1 TACCCTCGATTTATAAAATTACCAAAA
* * * *
7425052 TACCCTTGGTTTGTAAAATTACCGAAA
1 TACCCTCGATTTATAAAATTACCAAAA
* *
7425079 TACCCTCAATTTGTAAAATTACCAAAA
1 TACCCTCGATTTATAAAATTACCAAAA
* *
7425106 TACCC-CTAGTTTGTAAAATTACCAAAA
1 TACCCTCGA-TTTATAAAATTACCAAAA
* * * * *
7425133 TACCACT-GGTTTGTGAAATTATCGAAA
1 TACC-CTCGATTTATAAAATTACCAAAA
* *
7425160 TACCCTCAATTTGTAAAATTACCAAAA
1 TACCCTCGATTTATAAAATTACCAAAA
* *
7425187 TACCC-CTGATTTACAAAGTTA-CAGAAA
1 TACCCTC-GATTTATAAAATTACCA-AAA
7425214 TACCCT
1 TACCCT
7425220 TGACTTTCTA
Statistics
Matches: 203, Mismatches: 35, Indels: 19
0.79 0.14 0.07
Matches are distributed among these distances:
26 29 0.14
27 173 0.85
28 1 0.00
ACGTcount: A:0.40, C:0.21, G:0.09, T:0.29
Consensus pattern (27 bp):
TACCCTCGATTTATAAAATTACCAAAA
Found at i:7424985 original size:54 final size:54
Alignment explanation
Indices: 7424869--7424994 Score: 135
Period size: 54 Copynumber: 2.3 Consensus size: 54
7424859 CGTTTTATGC
* * * **** *
7424869 TCGATTTATAGAATTACCGTTTTACCCTCAATTTATAGAATTACTGTTTTACCC
1 TCGATTTACAGAATTACCGTTTTACCCTCAATTTACAAAATTACTAAAATACCA
* * *
7424923 TTGATTTACAGAATTACTGTTTTACCCTCGATTTACAAAATTACTAAAATACCA
1 TCGATTTACAGAATTACCGTTTTACCCTCAATTTACAAAATTACTAAAATACCA
* *
7424977 TCGGTTTACAAAATTACC
1 TCGATTTACAGAATTACC
7424995 AAAATACCCT
Statistics
Matches: 57, Mismatches: 15, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
54 57 1.00
ACGTcount: A:0.33, C:0.20, G:0.09, T:0.39
Consensus pattern (54 bp):
TCGATTTACAGAATTACCGTTTTACCCTCAATTTACAAAATTACTAAAATACCA
Found at i:7425003 original size:54 final size:54
Alignment explanation
Indices: 7424945--7425297 Score: 239
Period size: 54 Copynumber: 6.5 Consensus size: 54
7424935 ATTACTGTTT
** *
7424945 TACCCTCGATTTACAAAATTACTAAAATACCATCGGTTTACAAAATTACCAAAA
1 TACCCTCGATTTGTAAAATTACCAAAATACCATCGGTTTACAAAATTACCAAAA
* * * * ** * *
7424999 TACCCTCGATTAGTAAAATTACCAAAATACCCT-AGTCTGTAAAATTGCTAAAA
1 TACCCTCGATTTGTAAAATTACCAAAATACCATCGGTTTACAAAATTACCAAAA
* * * * ** **
7425052 TACCCTTGGTTTGTAAAATTACCGAAATACCCTCAATTTGTAAAATTACCAAAA
1 TACCCTCGATTTGTAAAATTACCAAAATACCATCGGTTTACAAAATTACCAAAA
* *** * *
7425106 TACCC-CTAGTTTGTAAAATTACCAAAATACCA-CTGGTTTGTGAAATTATCGAAA
1 TACCCTCGA-TTTGTAAAATTACCAAAATACCATC-GGTTTACAAAATTACCAAAA
* * * *
7425160 TACCCTCAATTTGTAAAATTACCAAAATACC-CCTGATTTACAAAGTTA-CAGAAA
1 TACCCTCGATTTGTAAAATTACCAAAATACCATC-GGTTTACAAAATTACCA-AAA
* * *** * **
7425214 TACCCTTGACTTTCTAAAAATTATGGAAATACCATTGGTTTAACAAAATTACTGAAA
1 TACCCTCGA-TTTGT-AAAATTACCAAAATACCATCGGTTT-ACAAAATTACCAAAA
* * * *
7425271 TACCCTTGGTTTGTAGATTTACCAAAA
1 TACCCTCGATTTGTAAAATTACCAAAA
7425298 CACCCTTATA
Statistics
Matches: 233, Mismatches: 55, Indels: 21
0.75 0.18 0.07
Matches are distributed among these distances:
53 45 0.19
54 133 0.57
55 14 0.06
56 22 0.09
57 19 0.08
ACGTcount: A:0.40, C:0.20, G:0.10, T:0.31
Consensus pattern (54 bp):
TACCCTCGATTTGTAAAATTACCAAAATACCATCGGTTTACAAAATTACCAAAA
Found at i:7425051 original size:26 final size:26
Alignment explanation
Indices: 7424959--7425191 Score: 241
Period size: 27 Copynumber: 8.7 Consensus size: 26
7424949 CTCGATTTAC
* * * **
7424959 AAAATTACTAAAATACCATCGGTTTAC
1 AAAATTACCAAAATACCCT-AGTTTGT
* *
7424986 AAAATTACCAAAATACCCTCGATTAGT
1 AAAATTACCAAAATACCCTAG-TTTGT
*
7425013 AAAATTACCAAAATACCCTAGTCTGT
1 AAAATTACCAAAATACCCTAGTTTGT
* * *
7425039 AAAATTGCTAAAATACCCTTGGTTTGT
1 AAAATTACCAAAATACCC-TAGTTTGT
* *
7425066 AAAATTACCGAAATACCCTCAATTTGT
1 AAAATTACCAAAATACCCT-AGTTTGT
7425093 AAAATTACCAAAATACCCCTAGTTTGT
1 AAAATTACCAAAATA-CCCTAGTTTGT
*
7425120 AAAATTACCAAAATACCACTGGTTTGT
1 AAAATTACCAAAATACC-CTAGTTTGT
* * * *
7425147 GAAATTATCGAAATACCCTCAATTTGT
1 AAAATTACCAAAATACCCT-AGTTTGT
7425174 AAAATTACCAAAATACCC
1 AAAATTACCAAAATACCC
7425192 CTGATTTACA
Statistics
Matches: 171, Mismatches: 29, Indels: 12
0.81 0.14 0.06
Matches are distributed among these distances:
26 25 0.15
27 142 0.83
28 4 0.02
ACGTcount: A:0.42, C:0.21, G:0.09, T:0.29
Consensus pattern (26 bp):
AAAATTACCAAAATACCCTAGTTTGT
Found at i:7425159 original size:81 final size:81
Alignment explanation
Indices: 7424959--7425193 Score: 341
Period size: 81 Copynumber: 2.9 Consensus size: 81
7424949 CTCGATTTAC
** * * *
7424959 AAAATTACTAAAATACCA-TCGGTTTACAAAATTACCAAAATACCCTCGATTAGTAAAATTACCA
1 AAAATTACTAAAATACCACT-GGTTTGTAAAATTACCGAAATACCCTCAATTTGTAAAATTACCA
7425023 AAATA-CCCTAGTCTGT
65 AAATACCCCTAGTCTGT
*
7425039 AAAATTGCTAAAATACC-CTTGGTTTGTAAAATTACCGAAATACCCTCAATTTGTAAAATTACCA
1 AAAATTACTAAAATACCAC-TGGTTTGTAAAATTACCGAAATACCCTCAATTTGTAAAATTACCA
*
7425103 AAATACCCCTAGTTTGT
65 AAATACCCCTAGTCTGT
* * *
7425120 AAAATTACCAAAATACCACTGGTTTGTGAAATTATCGAAATACCCTCAATTTGTAAAATTACCAA
1 AAAATTACTAAAATACCACTGGTTTGTAAAATTACCGAAATACCCTCAATTTGTAAAATTACCAA
7425185 AATACCCCT
66 AATACCCCT
7425194 GATTTACAAA
Statistics
Matches: 140, Mismatches: 11, Indels: 7
0.89 0.07 0.04
Matches are distributed among these distances:
80 60 0.43
81 79 0.56
82 1 0.01
ACGTcount: A:0.41, C:0.21, G:0.09, T:0.29
Consensus pattern (81 bp):
AAAATTACTAAAATACCACTGGTTTGTAAAATTACCGAAATACCCTCAATTTGTAAAATTACCAA
AATACCCCTAGTCTGT
Found at i:7425427 original size:27 final size:27
Alignment explanation
Indices: 7425336--7425427 Score: 125
Period size: 27 Copynumber: 3.4 Consensus size: 27
7425326 ACCCCTATTA
*
7425336 GGTAAAAAGACCGTAAAGCCCCTGTAG
1 GGTAAAATGACCGTAAAGCCCCTGTAG
7425363 GGTAAAGA-GACCGTAAAGCCCCTGTAG
1 GGTAAA-ATGACCGTAAAGCCCCTGTAG
* *
7425390 GGTAAAGTGACCGTAATA-CCCCTGTAT
1 GGTAAAATGACCGTAA-AGCCCCTGTAG
7425417 GGTAAAATGAC
1 GGTAAAATGAC
7425428 GAATGTGCCC
Statistics
Matches: 59, Mismatches: 3, Indels: 6
0.87 0.04 0.09
Matches are distributed among these distances:
27 57 0.97
28 2 0.03
ACGTcount: A:0.35, C:0.21, G:0.26, T:0.18
Consensus pattern (27 bp):
GGTAAAATGACCGTAAAGCCCCTGTAG
Found at i:7426269 original size:25 final size:25
Alignment explanation
Indices: 7426227--7426310 Score: 109
Period size: 25 Copynumber: 3.4 Consensus size: 25
7426217 GAGGAAGTGC
7426227 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTT-TGCCCCAGTTTATTG
* **
7426253 AAAAGGGATTTGCCCCAGTTTACCG
1 AAAAGGGCTTTGCCCCAGTTTATTG
7426278 AAAAGGGCTTTGCCCCAG-TTATT-
1 AAAAGGGCTTTGCCCCAGTTTATTG
7426301 AAAAGAGGCT
1 AAAAG-GGCT
7426311 AGGCCTCCAG
Statistics
Matches: 51, Mismatches: 6, Indels: 4
0.84 0.10 0.07
Matches are distributed among these distances:
23 5 0.10
24 7 0.14
25 30 0.59
26 9 0.18
ACGTcount: A:0.30, C:0.20, G:0.24, T:0.26
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTATTG
Found at i:7426632 original size:29 final size:31
Alignment explanation
Indices: 7426516--7426632 Score: 127
Period size: 31 Copynumber: 3.9 Consensus size: 31
7426506 CGTTTACAGT
* *
7426516 AAAGGCTTCGGCCCAATGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTAATGA
* *
7426547 AAAGGCTTCGGCCTAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTAATGA
* **
7426578 AAAGGCTTCAGCCCAGT-A-ACCATTAAATG-
1 AAAGGCTTCGGCCCAGTGATATGATT-AATGA
7426607 AAAGGCTTCGGCCCAGT-ATATG-TTAA
1 AAAGGCTTCGGCCCAGTGATATGATTAA
7426633 GACTAAATAG
Statistics
Matches: 74, Mismatches: 10, Indels: 7
0.81 0.11 0.08
Matches are distributed among these distances:
28 2 0.03
29 23 0.31
30 5 0.07
31 44 0.59
ACGTcount: A:0.32, C:0.18, G:0.22, T:0.27
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGATATGATTAATGA
Found at i:7430456 original size:41 final size:41
Alignment explanation
Indices: 7430385--7430465 Score: 119
Period size: 41 Copynumber: 2.0 Consensus size: 41
7430375 ATCCGAACTC
* *
7430385 GTTGAGTTGAGTCCGAGTTCACTTATTGTAACTAGGCATCT
1 GTTGAGTTGAGTCCGAGTTCACTGAATGTAACTAGGCATCT
*
7430426 GTTGAGTTGAGTCCGAGTTC-GTGAGATGTAACTAGGCATC
1 GTTGAGTTGAGTCCGAGTTCACTGA-ATGTAACTAGGCATC
7430466 CGAACTCGTT
Statistics
Matches: 36, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
40 2 0.06
41 34 0.94
ACGTcount: A:0.22, C:0.16, G:0.28, T:0.33
Consensus pattern (41 bp):
GTTGAGTTGAGTCCGAGTTCACTGAATGTAACTAGGCATCT
Found at i:7430485 original size:54 final size:54
Alignment explanation
Indices: 7430426--7430532 Score: 205
Period size: 54 Copynumber: 2.0 Consensus size: 54
7430416 CTAGGCATCT
*
7430426 GTTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAGGCATCCGAACTCGTTGAGC
1 GTTGAGTTGAGTCCGAGTTCGTAAGATGTAACTAGGCATCCGAACTCGTTGAGC
7430480 GTTGAGTTGAGTCCGAGTTCGTAAGATGTAACTAGGCATCCGAACTCGTTGAG
1 GTTGAGTTGAGTCCGAGTTCGTAAGATGTAACTAGGCATCCGAACTCGTTGAG
7430533 TTGAGTCCGA
Statistics
Matches: 52, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
54 52 1.00
ACGTcount: A:0.23, C:0.18, G:0.31, T:0.28
Consensus pattern (54 bp):
GTTGAGTTGAGTCCGAGTTCGTAAGATGTAACTAGGCATCCGAACTCGTTGAGC
Found at i:7430859 original size:19 final size:20
Alignment explanation
Indices: 7430822--7430859 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
7430812 ATAAGGTGGT
7430822 AAGATGATGAATGATGTTTA
1 AAGATGATGAATGATGTTTA
7430842 AAGATG-TGATAT-ATGTTT
1 AAGATGATGA-ATGATGTTT
7430860 TGGTGGTACC
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.37, C:0.00, G:0.24, T:0.39
Consensus pattern (20 bp):
AAGATGATGAATGATGTTTA
Found at i:7434472 original size:21 final size:21
Alignment explanation
Indices: 7434443--7434482 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
7434433 TGGTTCATGG
7434443 GAAAATTTTCT-AAGTTTTCCT
1 GAAAATTTT-TAAAGTTTTCCT
*
7434464 GAAACTTTTTAAAGTTTTC
1 GAAAATTTTTAAAGTTTTC
7434483 GGTTTAGTCC
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 1 0.06
21 16 0.94
ACGTcount: A:0.30, C:0.12, G:0.10, T:0.47
Consensus pattern (21 bp):
GAAAATTTTTAAAGTTTTCCT
Found at i:7436597 original size:49 final size:49
Alignment explanation
Indices: 7436533--7436707 Score: 235
Period size: 49 Copynumber: 3.5 Consensus size: 49
7436523 CTGGTACGCA
*
7436533 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCAGGTACACG
* * * * *
7436582 TAGTAGCCTGCACTTAGTACTACACA-CCTATTCGAAGTTATCAGGTACGCA
1 TAGTAGCCTGCACTTAGTACTACACATGCGA--CCAA-TTATCAGGTACACG
** *
7436633 TAGTAGCCTGCACTTAGTACTACACATGCGACCAACAATCTGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCAGGTACACG
7436682 TAGTAGCCTGCACTTAGTACTACACA
1 TAGTAGCCTGCACTTAGTACTACACA
7436708 CGTGACCTCA
Statistics
Matches: 108, Mismatches: 14, Indels: 8
0.83 0.11 0.06
Matches are distributed among these distances:
48 2 0.02
49 61 0.56
50 6 0.06
51 37 0.34
52 2 0.02
ACGTcount: A:0.30, C:0.27, G:0.18, T:0.25
Consensus pattern (49 bp):
TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCAGGTACACG
Found at i:7436687 original size:100 final size:100
Alignment explanation
Indices: 7436514--7436708 Score: 345
Period size: 100 Copynumber: 1.9 Consensus size: 100
7436504 CACTTGTAGC
* **
7436514 CGAAGCTATCTGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTAC
1 CGAAGCTATCAGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAACAATCCGGTAC
7436579 ACGTAGTAGCCTGCACTTAGTACTACACACCTATT
66 ACGTAGTAGCCTGCACTTAGTACTACACACCTATT
* *
7436614 CGAAGTTATCAGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAACAATCTGGTAC
1 CGAAGCTATCAGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAACAATCCGGTAC
7436679 ACGTAGTAGCCTGCACTTAGTACTACACAC
66 ACGTAGTAGCCTGCACTTAGTACTACACAC
7436709 GTGACCTCAC
Statistics
Matches: 90, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
100 90 1.00
ACGTcount: A:0.29, C:0.28, G:0.18, T:0.25
Consensus pattern (100 bp):
CGAAGCTATCAGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAACAATCCGGTAC
ACGTAGTAGCCTGCACTTAGTACTACACACCTATT
Found at i:7437396 original size:30 final size:30
Alignment explanation
Indices: 7437362--7437421 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
7437352 CTTTAATACG
7437362 AACTTTGGCAAAATTAC-CATTTTGCCCCTA
1 AACTTTGGCAAAATTACAC-TTTTGCCCCTA
* *
7437392 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGCAAAATTACACTTTTGCCCCTA
7437422 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
30 26 0.96
31 1 0.04
ACGTcount: A:0.28, C:0.27, G:0.08, T:0.37
Consensus pattern (30 bp):
AACTTTGGCAAAATTACACTTTTGCCCCTA
Found at i:7444068 original size:27 final size:27
Alignment explanation
Indices: 7444029--7444108 Score: 90
Period size: 27 Copynumber: 2.9 Consensus size: 27
7444019 TTAGAATACT
* *
7444029 TTAGTTTACTAAAATTACCGAAATACCC
1 TTAGTTT-GTAAAATTACTGAAATACCC
* *
7444057 TTAGTTTGTAAAAATACTGAAATACTC
1 TTAGTTTGTAAAATTACTGAAATACCC
*
7444084 -TCGATTTGTAAAATTACTGAAATAC
1 TTAG-TTTGTAAAATTACTGAAATAC
7444109 TTTCGACTTG
Statistics
Matches: 45, Mismatches: 6, Indels: 3
0.83 0.11 0.06
Matches are distributed among these distances:
26 2 0.04
27 36 0.80
28 7 0.16
ACGTcount: A:0.40, C:0.15, G:0.10, T:0.35
Consensus pattern (27 bp):
TTAGTTTGTAAAATTACTGAAATACCC
Found at i:7444109 original size:27 final size:27
Alignment explanation
Indices: 7444038--7444127 Score: 110
Period size: 27 Copynumber: 3.3 Consensus size: 27
7444028 TTTAGTTTAC
* * *
7444038 TAAAATTACCGAAATACCCT-TAGTTTG
1 TAAAATTACTGAAATACTCTCGA-TTTG
*
7444065 TAAAAATACTGAAATACTCTCGATTTG
1 TAAAATTACTGAAATACTCTCGATTTG
* *
7444092 TAAAATTACTGAAATACTTTCGACTTG
1 TAAAATTACTGAAATACTCTCGATTTG
7444119 TAAAATTAC
1 TAAAATTAC
7444128 CAAAGTACCC
Statistics
Matches: 55, Mismatches: 7, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
27 54 0.98
28 1 0.02
ACGTcount: A:0.40, C:0.16, G:0.10, T:0.34
Consensus pattern (27 bp):
TAAAATTACTGAAATACTCTCGATTTG
Found at i:7444234 original size:54 final size:54
Alignment explanation
Indices: 7444133--7444344 Score: 219
Period size: 54 Copynumber: 3.9 Consensus size: 54
7444123 ATTACCAAAG
* * * * * *
7444133 TACCCCCGATTTATAGAATTACCGTTTTACCC-CTGATTTACATAATTACCGTTT
1 TACCCCCGATTTACAGAATTACCATTTTACCCTC-AATTTATAGAATTACTGTTT
* * * *
7444187 TACCCCCGATTTACATAATTACCGTTTTGCCCTCAAATTATAGAATTACTGTTT
1 TACCCCCGATTTACAGAATTACCATTTTACCCTCAATTTATAGAATTACTGTTT
* * * * *
7444241 TACCCTCGATTTATAGAATTACCATTTTACCCTCGATTTATAGAATTACTATGT
1 TACCCCCGATTTACAGAATTACCATTTTACCCTCAATTTATAGAATTACTGTTT
** * * * *
7444295 TACCCTTGATTTACAAAATTACTATTTTACCCTCAATTTACAAAATTACT
1 TACCCCCGATTTACAGAATTACCATTTTACCCTCAATTTATAGAATTACT
7444345 AAAATACCCT
Statistics
Matches: 133, Mismatches: 24, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
54 132 0.99
55 1 0.01
ACGTcount: A:0.30, C:0.23, G:0.08, T:0.40
Consensus pattern (54 bp):
TACCCCCGATTTACAGAATTACCATTTTACCCTCAATTTATAGAATTACTGTTT
Found at i:7444297 original size:27 final size:27
Alignment explanation
Indices: 7444133--7444343 Score: 199
Period size: 27 Copynumber: 7.8 Consensus size: 27
7444123 ATTACCAAAG
* * *
7444133 TACCCCCGATTTATAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCATTT
* *
7444160 TACCC-CTGATTTACATAATTACCGTTT
1 TACCCTC-GATTTACAGAATTACCATTT
* * *
7444187 TACCCCCGATTTACATAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCATTT
* * * * **
7444214 TGCCCTCAAATTATAGAATTACTGTTT
1 TACCCTCGATTTACAGAATTACCATTT
*
7444241 TACCCTCGATTTATAGAATTACCATTT
1 TACCCTCGATTTACAGAATTACCATTT
* * *
7444268 TACCCTCGATTTATAGAATTACTATGT
1 TACCCTCGATTTACAGAATTACCATTT
* * *
7444295 TACCCTTGATTTACAAAATTACTATTT
1 TACCCTCGATTTACAGAATTACCATTT
* *
7444322 TACCCTCAATTTACAAAATTAC
1 TACCCTCGATTTACAGAATTAC
7444344 TAAAATACCC
Statistics
Matches: 160, Mismatches: 22, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
26 1 0.01
27 158 0.99
28 1 0.01
ACGTcount: A:0.30, C:0.23, G:0.08, T:0.39
Consensus pattern (27 bp):
TACCCTCGATTTACAGAATTACCATTT
Found at i:7444315 original size:81 final size:81
Alignment explanation
Indices: 7444133--7444343 Score: 226
Period size: 81 Copynumber: 2.6 Consensus size: 81
7444123 ATTACCAAAG
* * * *
7444133 TACCCCCGATTTATAGAATTACCGTTTTACCC-CTGATTTACATAATTACCGTTTTACCCCCGAT
1 TACCCTCGATTTATAGAATTACTGTTTTACCCTC-GATTTACAAAATTACCATTTTACCCCCGAT
* * *
7444197 TTACATAATTACCGTTT
65 TTACAGAATTACCATGT
* * * * * *
7444214 TGCCCTCAAATTATAGAATTACTGTTTTACCCTCGATTTATAGAATTACCATTTTACCCTCGATT
1 TACCCTCGATTTATAGAATTACTGTTTTACCCTCGATTTACAAAATTACCATTTTACCCCCGATT
* *
7444279 TATAGAATTACTATGT
66 TACAGAATTACCATGT
* * * * *
7444295 TACCCTTGATTTACAAAATTACTATTTTACCCTCAATTTACAAAATTAC
1 TACCCTCGATTTATAGAATTACTGTTTTACCCTCGATTTACAAAATTAC
7444344 TAAAATACCC
Statistics
Matches: 105, Mismatches: 24, Indels: 2
0.80 0.18 0.02
Matches are distributed among these distances:
81 104 0.99
82 1 0.01
ACGTcount: A:0.30, C:0.23, G:0.08, T:0.39
Consensus pattern (81 bp):
TACCCTCGATTTATAGAATTACTGTTTTACCCTCGATTTACAAAATTACCATTTTACCCCCGATT
TACAGAATTACCATGT
Found at i:7444352 original size:27 final size:27
Alignment explanation
Indices: 7444295--7444546 Score: 159
Period size: 27 Copynumber: 9.3 Consensus size: 27
7444285 ATTACTATGT
* ***
7444295 TACCCTTGATTTACAAAATTACTATTT
1 TACCCTTAATTTACAAAATTACTAAAA
*
7444322 TACCCTCAATTTACAAAATTACTAAAA
1 TACCCTTAATTTACAAAATTACTAAAA
** ** *
7444349 TACCCTTGGTTTGTAAAATTACCAAAA
1 TACCCTTAATTTACAAAATTACTAAAA
* * * *
7444376 TACCCATAGTTTATAAAATTACCAAAA
1 TACCCTTAATTTACAAAATTACTAAAA
** *** **
7444403 TACCCTTGGTTTGTGAAATTACCGAAA
1 TACCCTTAATTTACAAAATTACTAAAA
* ** *
7444430 TACCCTCAATTTGTAAAATTACCAAAA
1 TACCCTTAATTTACAAAATTACTAAAA
* * *
7444457 TACCCCTGATTTACAAAGTTA-TAGAAA
1 TACCCTTAATTTACAAAATTACTA-AAA
7444484 TACCCTTAACTTT-CTAAAAATTA-TAGAAA
1 TACCCTTAA-TTTAC--AAAATTACTA-AAA
* * *
7444513 TACCATTAGTTTACAAAATTACTGAAA
1 TACCCTTAATTTACAAAATTACTAAAA
7444540 TACCCTT
1 TACCCTT
7444547 GGTTTGTAGA
Statistics
Matches: 181, Mismatches: 38, Indels: 12
0.78 0.16 0.05
Matches are distributed among these distances:
26 1 0.01
27 153 0.85
28 7 0.04
29 20 0.11
ACGTcount: A:0.40, C:0.19, G:0.07, T:0.33
Consensus pattern (27 bp):
TACCCTTAATTTACAAAATTACTAAAA
Found at i:7444353 original size:54 final size:54
Alignment explanation
Indices: 7444241--7444469 Score: 201
Period size: 54 Copynumber: 4.2 Consensus size: 54
7444231 ATTACTGTTT
* * ** * * * ***
7444241 TACCCTCGATTTATAGAATTACCATTTTACCCTCGATTTATAGAATTACTATGT
1 TACCCTTGATTTATAAAATTACCATAATACCCTCAATTTATAAAATTACCAAAA
* * ** * *
7444295 TACCCTTGATTTACAAAATTACTATTTTACCCTCAATTTACAAAATTACTAAAA
1 TACCCTTGATTTATAAAATTACCATAATACCCTCAATTTATAAAATTACCAAAA
* * * *
7444349 TACCCTTGGTTTGTAAAATTACCAAAATACCCAT-AGTTTATAAAATTACCAAAA
1 TACCCTTGATTTATAAAATTACCATAATACCC-TCAATTTATAAAATTACCAAAA
* * * *
7444403 TACCCTTGGTTTGTGAAATTACCGA-AATACCCTCAATTTGTAAAATTACCAAAA
1 TACCCTTGATTTATAAAATTACC-ATAATACCCTCAATTTATAAAATTACCAAAA
*
7444457 TACCCCTGATTTA
1 TACCCTTGATTTA
7444470 CAAAGTTATA
Statistics
Matches: 146, Mismatches: 26, Indels: 6
0.82 0.15 0.03
Matches are distributed among these distances:
53 1 0.01
54 143 0.98
55 2 0.01
ACGTcount: A:0.37, C:0.21, G:0.07, T:0.35
Consensus pattern (54 bp):
TACCCTTGATTTATAAAATTACCATAATACCCTCAATTTATAAAATTACCAAAA
Found at i:7444380 original size:81 final size:81
Alignment explanation
Indices: 7444295--7444473 Score: 180
Period size: 81 Copynumber: 2.2 Consensus size: 81
7444285 ATTACTATGT
* * *** * ***
7444295 TACCCTTGATTTACAAAATTACTATTTTACCCTCAATTTACAAAATTACTAAAATACCCTTGGTT
1 TACCCATGATTTACAAAATTACCAAAATACCCTCAATTTACAAAATTACCAAAATACCCTCAATT
7444360 TGTAAAATTACCAAAA
66 TGTAAAATTACCAAAA
* *** *** *
7444376 TACCCAT-AGTTTATAAAATTACCAAAATACCCTTGGTTTGTGAAATTACCGAAATACCCTCAAT
1 TACCCATGA-TTTACAAAATTACCAAAATACCCTCAATTTACAAAATTACCAAAATACCCTCAAT
7444440 TTGTAAAATTACCAAAA
65 TTGTAAAATTACCAAAA
*
7444457 TACCCCTGATTTACAAA
1 TACCCATGATTTACAAA
7444474 GTTATAGAAA
Statistics
Matches: 77, Mismatches: 19, Indels: 4
0.77 0.19 0.04
Matches are distributed among these distances:
80 1 0.01
81 75 0.97
82 1 0.01
ACGTcount: A:0.40, C:0.21, G:0.07, T:0.33
Consensus pattern (81 bp):
TACCCATGATTTACAAAATTACCAAAATACCCTCAATTTACAAAATTACCAAAATACCCTCAATT
TGTAAAATTACCAAAA
Found at i:7444484 original size:54 final size:53
Alignment explanation
Indices: 7444322--7444545 Score: 186
Period size: 54 Copynumber: 4.1 Consensus size: 53
7444312 ATTACTATTT
* *
7444322 TACCCTCAATTTACAAAATTACTAAAATACCCTTGGTTTGTA-AAATTACCA-AAA
1 TACCCTCAATTTATAAAATTACCAAAATACCCTTGG-TT-TACAAATTA-CAGAAA
* ** *
7444376 TACCCAT-AGTTTATAAAATTACCAAAATACCCTTGGTTTGTGAAATTACCGAAA
1 TACCC-TCAATTTATAAAATTACCAAAATACCCTTGGTTT-ACAAATTACAGAAA
* * * *
7444430 TACCCTCAATTTGTAAAATTACCAAAATACCCCTGATTTACAAAGTTATAGAAA
1 TACCCTCAATTTATAAAATTACCAAAATACCCTTGGTTTACAAA-TTACAGAAA
* * * * * *
7444484 TACCCTTAACTTTCTAAAAATTA-TAGAAATACCATTAGTTTACAAAATTACTGAAA
1 TACCCTCAA-TTTAT-AAAATTACCA-AAATACCCTTGGTTTAC-AAATTACAGAAA
7444540 TACCCT
1 TACCCT
7444546 TGGTTTGTAG
Statistics
Matches: 138, Mismatches: 22, Indels: 18
0.78 0.12 0.10
Matches are distributed among these distances:
52 1 0.01
53 7 0.05
54 88 0.64
55 6 0.04
56 33 0.24
57 3 0.02
ACGTcount: A:0.42, C:0.20, G:0.07, T:0.32
Consensus pattern (53 bp):
TACCCTCAATTTATAAAATTACCAAAATACCCTTGGTTTACAAATTACAGAAA
Found at i:7444635 original size:27 final size:27
Alignment explanation
Indices: 7444605--7444696 Score: 114
Period size: 27 Copynumber: 3.4 Consensus size: 27
7444595 ACCCCTATTA
*
7444605 GGTAAAAAGACCGTAAAGCCCCTGTAG
1 GGTAAAATGACCGTAAAGCCCCTGTAG
* * *
7444632 GGTAAAGTGACCGTAAAGCCCTTGTGG
1 GGTAAAATGACCGTAAAGCCCCTGTAG
* *
7444659 GGTAAAGTGACCGTAATA-CCCCTGTAT
1 GGTAAAATGACCGTAA-AGCCCCTGTAG
7444686 GGTAAAATGAC
1 GGTAAAATGAC
7444697 GAATATGCCC
Statistics
Matches: 56, Mismatches: 8, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
27 55 0.98
28 1 0.02
ACGTcount: A:0.33, C:0.20, G:0.27, T:0.21
Consensus pattern (27 bp):
GGTAAAATGACCGTAAAGCCCCTGTAG
Found at i:7445596 original size:25 final size:26
Alignment explanation
Indices: 7445499--7445596 Score: 162
Period size: 26 Copynumber: 3.8 Consensus size: 26
7445489 GAGGAAGTGC
7445499 AAAAGGGCTTATGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTACCG
**
7445525 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTACCG
7445551 AAAAGGGCTTATGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTACCG
*
7445577 AAAAGGGCTT-TGCCCTAGTT
1 AAAAGGGCTTATGCCCCAGTT
7445597 ATTAAAGAGG
Statistics
Matches: 67, Mismatches: 5, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
25 9 0.13
26 58 0.87
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Consensus pattern (26 bp):
AAAAGGGCTTATGCCCCAGTTTACCG
Found at i:7445800 original size:42 final size:42
Alignment explanation
Indices: 7445741--7445832 Score: 148
Period size: 42 Copynumber: 2.2 Consensus size: 42
7445731 TAGTCTCCCC
* ** *
7445741 AAATGGGCTTGCATACATTCATTGGTATTTCATGTGATATTG
1 AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
7445783 AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
1 AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
7445825 AAATGGGC
1 AAATGGGC
7445833 CTATAGGCCA
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
42 46 1.00
ACGTcount: A:0.29, C:0.14, G:0.22, T:0.35
Consensus pattern (42 bp):
AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
Found at i:7445901 original size:31 final size:31
Alignment explanation
Indices: 7445856--7445934 Score: 113
Period size: 31 Copynumber: 2.5 Consensus size: 31
7445846 CGTTTACAGT
* *
7445856 AAAGGCTTCAGCCCAGTGAAATGATTTATGA
1 AAAGGATTCGGCCCAGTGAAATGATTTATGA
* *
7445887 AAAGGATTTGGCCCAGTGATATGATTTATGA
1 AAAGGATTCGGCCCAGTGAAATGATTTATGA
*
7445918 AAAGGCTTCGGCCCAGT
1 AAAGGATTCGGCCCAGT
7445935 AACCGTTAAA
Statistics
Matches: 42, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 42 1.00
ACGTcount: A:0.32, C:0.16, G:0.25, T:0.27
Consensus pattern (31 bp):
AAAGGATTCGGCCCAGTGAAATGATTTATGA
Found at i:7462361 original size:30 final size:31
Alignment explanation
Indices: 7462317--7462374 Score: 82
Period size: 30 Copynumber: 1.9 Consensus size: 31
7462307 ACCGAGCCTA
*
7462317 GGGAAACAAGTGTAATTATGCAAAAGTTTAG
1 GGGAAACAAATGTAATTATGCAAAAGTTTAG
* *
7462348 GGGAAA-AAATGTAATTTTGCCAAAGTT
1 GGGAAACAAATGTAATTATGCAAAAGTT
7462375 CGCATTAAAT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
30 18 0.75
31 6 0.25
ACGTcount: A:0.41, C:0.07, G:0.24, T:0.28
Consensus pattern (31 bp):
GGGAAACAAATGTAATTATGCAAAAGTTTAG
Found at i:7477986 original size:15 final size:15
Alignment explanation
Indices: 7477966--7477995 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
7477956 GTGTGCAGAA
7477966 TTATTAAAGCTTCAG
1 TTATTAAAGCTTCAG
7477981 TTATTAAAGCTTCAG
1 TTATTAAAGCTTCAG
7477996 CTAATCTTTA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.33, C:0.13, G:0.13, T:0.40
Consensus pattern (15 bp):
TTATTAAAGCTTCAG
Found at i:7480161 original size:56 final size:55
Alignment explanation
Indices: 7480094--7480204 Score: 170
Period size: 56 Copynumber: 2.0 Consensus size: 55
7480084 AGAATGCTAG
* *
7480094 GGAAAGAATAATAATCGAGCTTGTTACAGTTGTGGTTCACGAAA-TCATTTTATAA
1 GGAAAGAATAATAACCGAGCTTGTTACAATTGTGGTTCACGAAACT-ATTTTATAA
*
7480149 NGGAAAGAATAATAACCGATCTTGTTACAATTGTGGTTCACGAAACTATTTTATAA
1 -GGAAAGAATAATAACCGAGCTTGTTACAATTGTGGTTCACGAAACTATTTTATAA
7480205 AAGATTGCCC
Statistics
Matches: 51, Mismatches: 3, Indels: 2
0.91 0.05 0.04
Matches are distributed among these distances:
56 50 0.98
57 1 0.02
ACGTcount: A:0.37, C:0.12, G:0.18, T:0.32
Consensus pattern (55 bp):
GGAAAGAATAATAACCGAGCTTGTTACAATTGTGGTTCACGAAACTATTTTATAA
Found at i:7491356 original size:53 final size:54
Alignment explanation
Indices: 7491174--7491379 Score: 227
Period size: 53 Copynumber: 3.8 Consensus size: 54
7491164 ATTAGGGTTT
* * * * *
7491174 AAGGATACCAAGTAAGACCATGCCAAGGCATGGCATTGGTAAGTATTACAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAGTATCATAAGGC
* * * * * *
7491228 AAGGA-ATTCATGTAAGACCATGTCAAGACATGGCATTGATAAACTATGATAAGGC
1 AAGGATA-CCATGTAAGACCATGCCAAGACATGGCAATGGT-AAGTATCATAAGGC
* * * *
7491283 AAAGATCCCATGTAAGACCATGCCAAGGCATGGCAATGGTGAGT-TCATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAGTATCATAAGGC
* *
7491336 AAGGATACCACGTAAGACCATGTCAAGACATGGCAATGGTAAGT
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAGT
7491380 TTAAAAAGGA
Statistics
Matches: 125, Mismatches: 24, Indels: 7
0.80 0.15 0.04
Matches are distributed among these distances:
53 47 0.38
54 35 0.28
55 43 0.34
ACGTcount: A:0.37, C:0.18, G:0.25, T:0.20
Consensus pattern (54 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAGTATCATAAGGC
Found at i:7495159 original size:50 final size:50
Alignment explanation
Indices: 7495075--7495311 Score: 383
Period size: 48 Copynumber: 4.8 Consensus size: 50
7495065 CAAGATAAAT
7495075 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATATGAG
* *
7495125 ATACGTATTTGTGGTAAAGCCGAATGGCTAATGTGAAATATATATATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATATGAG
*
7495175 ATATGTATATGTGGTAAAGCCAAATGGCTAATGTG-AA-ATATATATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATATGAG
* *
7495223 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTG-AA-ATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATATGAG
* *
7495271 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTAAAATAT
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATAT
7495312 GTAGGAGATG
Statistics
Matches: 176, Mismatches: 9, Indels: 4
0.93 0.05 0.02
Matches are distributed among these distances:
48 90 0.51
49 4 0.02
50 82 0.47
ACGTcount: A:0.37, C:0.07, G:0.25, T:0.32
Consensus pattern (50 bp):
ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATATGAG
Found at i:7495510 original size:37 final size:37
Alignment explanation
Indices: 7495460--7495531 Score: 126
Period size: 37 Copynumber: 1.9 Consensus size: 37
7495450 GGAAATATAT
*
7495460 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATAACTACGTGTGGAGATTTTG
*
7495497 TCCGGGTAAGACCCGATAACTTCGTGTGGAGATTT
1 TCCGGGTAAGACCCGATAACTACGTGTGGAGATTT
7495532 CATCTGAGCT
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 33 1.00
ACGTcount: A:0.22, C:0.19, G:0.31, T:0.28
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATAACTACGTGTGGAGATTTTG
Found at i:7498030 original size:43 final size:42
Alignment explanation
Indices: 7497863--7498035 Score: 161
Period size: 43 Copynumber: 4.0 Consensus size: 42
7497853 ATATCGTACA
* * * * *
7497863 ATGCCAACGTCCTAGACGTGGTCTTACATGTAATCACATGTAG
1 ATGCCAATGTCCTAGACGTGGTCTTACACG-AAACACATATCG
* * *
7497906 GTGCCACTGTCCTAGACAG-GGTCTTACACGAATCACA-ATTACG
1 ATGCCAATGTCCTAGAC-GTGGTCTTACACGAAACACATA-T-CG
* * * **
7497949 GTGCCAATGTCCCAGACATGGTCTTAGTCGAAATCACATATCG
1 ATGCCAATGTCCTAGACGTGGTCTTACACGAAA-CACATATCG
7497992 ATGCCAATGTCCTAGACGTGGTCTTACACGAGAACACATATCG
1 ATGCCAATGTCCTAGACGTGGTCTTACACGA-AACACATATCG
7498035 A
1 A
7498036 AAATCCTATG
Statistics
Matches: 106, Mismatches: 17, Indels: 14
0.77 0.12 0.10
Matches are distributed among these distances:
42 8 0.08
43 89 0.84
44 8 0.08
45 1 0.01
ACGTcount: A:0.29, C:0.25, G:0.21, T:0.25
Consensus pattern (42 bp):
ATGCCAATGTCCTAGACGTGGTCTTACACGAAACACATATCG
Found at i:7499179 original size:14 final size:15
Alignment explanation
Indices: 7499162--7499190 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
7499152 GCACAAAAAT
7499162 TTCACACAT-ATAAA
1 TTCACACATAATAAA
7499176 TTCACACATAATAAA
1 TTCACACATAATAAA
7499191 CACTAAAAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 9 0.64
15 5 0.36
ACGTcount: A:0.52, C:0.21, G:0.00, T:0.28
Consensus pattern (15 bp):
TTCACACATAATAAA
Found at i:7502708 original size:27 final size:27
Alignment explanation
Indices: 7502676--7502736 Score: 79
Period size: 27 Copynumber: 2.3 Consensus size: 27
7502666 AGGAAGCATC
*
7502676 CTGGTGGCTATGCCACA-ATTATTTGAT
1 CTGGTGGCTATGCCACATATT-TCTGAT
* *
7502703 CTGGTGGCTTTGCCACATATTTCTGTT
1 CTGGTGGCTATGCCACATATTTCTGAT
7502730 CTGGTGG
1 CTGGTGG
7502737 TTCTGCCATG
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
27 27 0.90
28 3 0.10
ACGTcount: A:0.15, C:0.20, G:0.26, T:0.39
Consensus pattern (27 bp):
CTGGTGGCTATGCCACATATTTCTGAT
Found at i:7502743 original size:27 final size:26
Alignment explanation
Indices: 7502676--7502763 Score: 70
Period size: 27 Copynumber: 3.2 Consensus size: 26
7502666 AGGAAGCATC
* *
7502676 CTGGTGGCTATGCCACAATTATTTGAT
1 CTGGTGG-TTTGCCACAATTATCTGAT
*
7502703 CTGGTGGCTTTGCCACATATT-TCTGTT
1 CTGGTGG-TTTGCCACA-ATTATCTGAT
** *
7502730 CTGGTGGTTCTGCCATGATTATCTATAT
1 CTGGTGGTT-TGCCACAATTATCT-GAT
7502758 CTGGTG
1 CTGGTG
7502764 ACTCTGTCAC
Statistics
Matches: 50, Mismatches: 7, Indels: 7
0.78 0.11 0.11
Matches are distributed among these distances:
26 5 0.10
27 35 0.70
28 10 0.20
ACGTcount: A:0.16, C:0.19, G:0.24, T:0.41
Consensus pattern (26 bp):
CTGGTGGTTTGCCACAATTATCTGAT
Found at i:7503712 original size:56 final size:56
Alignment explanation
Indices: 7503642--7503749 Score: 180
Period size: 56 Copynumber: 1.9 Consensus size: 56
7503632 GAAAAAAATG
*
7503642 TTTTTAACATTTTTGATGTGGCACGTCGGATCCGGTCATAACGTCTAGGCCGGGTA
1 TTTTTAACATTTTTGATGTGGCACGTCGGATCCGGTCATAACGTCTAAGCCGGGTA
* * *
7503698 TTTTTAGCGTTTTTGATGTGGCACGTCGGATCTGGTCATAACGTCTAAGCCG
1 TTTTTAACATTTTTGATGTGGCACGTCGGATCCGGTCATAACGTCTAAGCCG
7503750 AGTTTGGGGT
Statistics
Matches: 48, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
56 48 1.00
ACGTcount: A:0.19, C:0.19, G:0.27, T:0.35
Consensus pattern (56 bp):
TTTTTAACATTTTTGATGTGGCACGTCGGATCCGGTCATAACGTCTAAGCCGGGTA
Done.