Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr9
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 91122320
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2661692 characters in sequence are not A, C, G, or T
File 221 of 279
Found at i:72424650 original size:31 final size:31
Alignment explanation
Indices: 72424605--72424683 Score: 122
Period size: 31 Copynumber: 2.5 Consensus size: 31
72424595 TTTAACGGTT
*
72424605 ACTAGGCTGAAGCCTTTTCATAAATCATATC
1 ACTAGGCCGAAGCCTTTTCATAAATCATATC
*
72424636 ACTGGGCCGAAGCCTTTTCATAAATCATATC
1 ACTAGGCCGAAGCCTTTTCATAAATCATATC
* *
72424667 ATTAGGCCGAAACCTTT
1 ACTAGGCCGAAGCCTTT
72424684 ACTGTAAATA
Statistics
Matches: 43, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 43 1.00
ACGTcount: A:0.30, C:0.24, G:0.15, T:0.30
Consensus pattern (31 bp):
ACTAGGCCGAAGCCTTTTCATAAATCATATC
Found at i:72424967 original size:51 final size:52
Alignment explanation
Indices: 72424889--72425023 Score: 190
Period size: 51 Copynumber: 2.7 Consensus size: 52
72424879 CTGGAGGCCT
* * *
72424889 AGCCTCTTTT-AAT-AACTAGGGCA-AAGCCCTTTTCGGTAAATTGGGGCA-A
1 AGCC-CTTTTCAATAAACTGGGGCATAAGCCCTTTTCGGTAAACTAGGGCATA
*
72424938 AGCCCTTTTCAATAAACTGGGGCATAAGCCCTTTCCGGTAAACTAGGGCATA
1 AGCCCTTTTCAATAAACTGGGGCATAAGCCCTTTTCGGTAAACTAGGGCATA
72424990 AG-CCTTTTCAATAAACTGGGGCATAAGCCCTTTT
1 AGCCCTTTTCAATAAACTGGGGCATAAGCCCTTTT
72425024 GCACTTCCTC
Statistics
Matches: 77, Mismatches: 5, Indels: 6
0.88 0.06 0.07
Matches are distributed among these distances:
48 5 0.06
49 7 0.09
50 9 0.12
51 53 0.69
52 3 0.04
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (52 bp):
AGCCCTTTTCAATAAACTGGGGCATAAGCCCTTTTCGGTAAACTAGGGCATA
Found at i:72424979 original size:26 final size:26
Alignment explanation
Indices: 72424889--72425023 Score: 154
Period size: 25 Copynumber: 5.3 Consensus size: 26
72424879 CTGGAGGCCT
*
72424889 AGCCTCTTTT-AAT-AACTAGGGCA-A
1 AGCC-CTTTTCAATAAACTGGGGCATA
** *
72424913 AGCCCTTTTCGGTAAATTGGGGCA-A
1 AGCCCTTTTCAATAAACTGGGGCATA
72424938 AGCCCTTTTCAATAAACTGGGGCATA
1 AGCCCTTTTCAATAAACTGGGGCATA
* ** *
72424964 AGCCCTTTCCGGTAAACTAGGGCATA
1 AGCCCTTTTCAATAAACTGGGGCATA
72424990 AG-CCTTTTCAATAAACTGGGGCATA
1 AGCCCTTTTCAATAAACTGGGGCATA
72425015 AGCCCTTTT
1 AGCCCTTTT
72425024 GCACTTCCTC
Statistics
Matches: 92, Mismatches: 15, Indels: 6
0.81 0.13 0.05
Matches are distributed among these distances:
23 5 0.05
24 5 0.05
25 51 0.55
26 31 0.34
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
AGCCCTTTTCAATAAACTGGGGCATA
Found at i:72425852 original size:27 final size:27
Alignment explanation
Indices: 72425822--72425913 Score: 116
Period size: 27 Copynumber: 3.4 Consensus size: 27
72425812 GGGCACATTC
*
72425822 GTCATTTTACCATACAGGGG-TATTACG
1 GTCATTTTACCCTACAGGGGCT-TTACG
*
72425849 GTCACTTTACCCTACAGGGGCTTTACG
1 GTCATTTTACCCTACAGGGGCTTTACG
72425876 GTC-TCTTTACCCTACAGGGGCTTTACG
1 GTCAT-TTTACCCTACAGGGGCTTTACG
* *
72425903 GACTTTTTACC
1 GTCATTTTACC
72425914 TAATAGGGGT
Statistics
Matches: 58, Mismatches: 4, Indels: 6
0.85 0.06 0.09
Matches are distributed among these distances:
27 56 0.97
28 2 0.03
ACGTcount: A:0.20, C:0.26, G:0.21, T:0.34
Consensus pattern (27 bp):
GTCATTTTACCCTACAGGGGCTTTACG
Found at i:72426146 original size:81 final size:81
Alignment explanation
Indices: 72426028--72426290 Score: 322
Period size: 81 Copynumber: 3.3 Consensus size: 81
72426018 TTTAGAAAGT
*
72426028 CAAGGGTATTTCT-GTAACTTTGTA-AATCT-GGGGTATTTTGGTAATTTTACAAATCGAAGGTA
1 CAAGGGTATTT-TAGTAA-TTT-TACAAACTAGGGGTATTTTGGTAATTTTACAAATCGAAGGTA
*
72426090 TTTCGGTAATTTCACAAAC
63 TTTCGGTAATTTTACAAAC
* *
72426109 C-AGTGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTACAAAT-TAAGGGTAT
1 CAAG-GGTATTTTAGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTACAAATCGAA-GGTAT
72426172 TTCGGTAATTTTACAAAC
64 TTCGGTAATTTTACAAAC
* * ** *
72426190 CAAGGGTATTTTAGCAATTTTACAGACTA-GGGTATTTTGGTAATTTTACTGATCGAGGGTATTT
1 CAAGGGTATTTTAGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTACAAATCGAAGGTATTT
* **
72426254 TGGTAATTTTGTAAAC
66 CGGTAATTTTACAAAC
*
72426270 CGAGGGTATTTTAGTAATTTT
1 CAAGGGTATTTTAGTAATTTT
72426291 GTAAATCAAG
Statistics
Matches: 160, Mismatches: 15, Indels: 15
0.84 0.08 0.08
Matches are distributed among these distances:
79 2 0.01
80 73 0.46
81 83 0.52
82 2 0.01
ACGTcount: A:0.29, C:0.10, G:0.21, T:0.41
Consensus pattern (81 bp):
CAAGGGTATTTTAGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTACAAATCGAAGGTATTT
CGGTAATTTTACAAAC
Found at i:72426291 original size:27 final size:27
Alignment explanation
Indices: 72425944--72426331 Score: 232
Period size: 27 Copynumber: 14.3 Consensus size: 27
72425934 TTTCATCCTA
* * * *
72425944 CAAGGGTGTTTTGGTAAATCTACAAA-
1 CAAGGGTATTTTGGTAATTTTATAAAT
** * *
72425970 CTAAGGGTATTTCAGTAATTTTGTTAAAC
1 C-AAGGGTATTTTGGTAATTTT-ATAAAT
* *** *
72425999 CAATGGTATTTCCATAATTTTTAGAAAGT
1 CAAGGGTATTTTGGTAA-TTTTATAAA-T
* *
72426028 CAAGGGTATTTCT-GTAACTTTGTAAAT
1 CAAGGGTATTT-TGGTAATTTTATAAAT
** *
72426055 CTGGGGTATTTTGGTAATTTTACAAAT
1 CAAGGGTATTTTGGTAATTTTATAAAT
* * *
72426082 CGAA-GGTATTTCGGTAATTTCACAAA-
1 C-AAGGGTATTTTGGTAATTTTATAAAT
* *
72426108 CCAGTGGTATTTTGGTAATTTTACAAA-
1 CAAG-GGTATTTTGGTAATTTTATAAAT
* *
72426135 CTAGGGGTATTTTGGTAATTTTACAAAT
1 C-AAGGGTATTTTGGTAATTTTATAAAT
* * * *
72426163 TAAGGGTATTTCGGTAATTTTACAAAC
1 CAAGGGTATTTTGGTAATTTTATAAAT
* * * *
72426190 CAAGGGTATTTTAGCAATTTTACAGA-
1 CAAGGGTATTTTGGTAATTTTATAAAT
* *
72426216 CTAGGGTATTTTGGTAATTTTACT-GAT
1 CAAGGGTATTTTGGTAATTTTA-TAAAT
* * *
72426243 CGAGGGTATTTTGGTAATTTTGTAAAC
1 CAAGGGTATTTTGGTAATTTTATAAAT
* * *
72426270 CGAGGGTATTTTAGTAATTTTGTAAAT
1 CAAGGGTATTTTGGTAATTTTATAAAT
*** * *
72426297 CAAGGGTAAAATAGTAATTTTGTAAAT
1 CAAGGGTATTTTGGTAATTTTATAAAT
72426324 CAAGGGTA
1 CAAGGGTA
72426332 AAATAGTAAT
Statistics
Matches: 291, Mismatches: 56, Indels: 29
0.77 0.15 0.08
Matches are distributed among these distances:
25 1 0.00
26 25 0.09
27 221 0.76
28 26 0.09
29 18 0.06
ACGTcount: A:0.31, C:0.09, G:0.20, T:0.39
Consensus pattern (27 bp):
CAAGGGTATTTTGGTAATTTTATAAAT
Found at i:72426303 original size:54 final size:54
Alignment explanation
Indices: 72425944--72426331 Score: 275
Period size: 54 Copynumber: 7.1 Consensus size: 54
72425934 TTTCATCCTA
* * * *
72425944 CAAGGGTGTTTTGGTAAATCTACAAA-CTAAGGGTATTTCAGTAATTTTGTTAAAC
1 CAAGGGTATTTTGGTAATTTTACAAATC-AAGGGTATTTTAGTAATTTTG-TAAAC
* *** * * *
72425999 CAATGGTATTTCCATAATTTTTAGAAAGTCAAGGGTATTTCT-GTAACTTTGTAAAT
1 CAAGGGTATTTTGGTAA-TTTTACAAA-TCAAGGGTATTT-TAGTAATTTTGTAAAC
** ** ***
72426055 CTGGGGTATTTTGGTAATTTTACAAATCGAA-GGTATTTCGGTAATTTCACAAAC
1 CAAGGGTATTTTGGTAATTTTACAAATC-AAGGGTATTTTAGTAATTTTGTAAAC
* * ** *
72426109 C-AGTGGTATTTTGGTAATTTTACAAA-CTAGGGGTATTTTGGTAATTTTACAAAT
1 CAAG-GGTATTTTGGTAATTTTACAAATC-AAGGGTATTTTAGTAATTTTGTAAAC
* * * * ** *
72426163 TAAGGGTATTTCGGTAATTTTACAAACCAAGGGTATTTTAGCAATTTTACAGA-
1 CAAGGGTATTTTGGTAATTTTACAAATCAAGGGTATTTTAGTAATTTTGTAAAC
* ** * *
72426216 CTAGGGTATTTTGGTAATTTTACTGATCGAGGGTATTTTGGTAATTTTGTAAAC
1 CAAGGGTATTTTGGTAATTTTACAAATCAAGGGTATTTTAGTAATTTTGTAAAC
* * ** *** *
72426270 CGAGGGTATTTTAGTAATTTTGTAAATCAAGGGTAAAATAGTAATTTTGTAAAT
1 CAAGGGTATTTTGGTAATTTTACAAATCAAGGGTATTTTAGTAATTTTGTAAAC
72426324 CAAGGGTA
1 CAAGGGTA
72426332 AAATAGTAAT
Statistics
Matches: 261, Mismatches: 61, Indels: 23
0.76 0.18 0.07
Matches are distributed among these distances:
53 44 0.17
54 152 0.58
55 25 0.10
56 21 0.08
57 18 0.07
58 1 0.00
ACGTcount: A:0.31, C:0.09, G:0.20, T:0.39
Consensus pattern (54 bp):
CAAGGGTATTTTGGTAATTTTACAAATCAAGGGTATTTTAGTAATTTTGTAAAC
Found at i:72426316 original size:107 final size:108
Alignment explanation
Indices: 72426095--72426317 Score: 243
Period size: 107 Copynumber: 2.1 Consensus size: 108
72426085 AGGTATTTCG
* *
72426095 GTAATTTCACAAACCAGTGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTACA
1 GTAATTTTACAAACCAGTGGTATTTTGGTAATTTTACAAACGAGGGGTATTTTGGTAATTTTACA
** * ***
72426160 AATTAAGGGTATTTCGGTAATTTTACAAACCAAGGGTATTTTA
66 AACCAAGGGTATTTCAGTAATTTTACAAACCAAGGGTAAAATA
* * * * * **
72426203 GCAATTTTACAGACTAG-GGTATTTTGGTAATTTTACTGATCGA-GGGTATTTTGGTAATTTTGT
1 GTAATTTTACAAACCAGTGGTATTTTGGTAATTTTAC-AAACGAGGGGTATTTTGGTAATTTTAC
* * ** *
72426266 AAACCGAGGGTATTTTAGTAATTTTGTAAATCAAGGGTAAAATA
65 AAACCAAGGGTATTTCAGTAATTTTACAAACCAAGGGTAAAATA
72426310 GTAATTTT
1 GTAATTTT
72426318 GTAAATCAAG
Statistics
Matches: 93, Mismatches: 21, Indels: 3
0.79 0.18 0.03
Matches are distributed among these distances:
107 77 0.83
108 16 0.17
ACGTcount: A:0.31, C:0.09, G:0.20, T:0.40
Consensus pattern (108 bp):
GTAATTTTACAAACCAGTGGTATTTTGGTAATTTTACAAACGAGGGGTATTTTGGTAATTTTACA
AACCAAGGGTATTTCAGTAATTTTACAAACCAAGGGTAAAATA
Found at i:72426332 original size:27 final size:27
Alignment explanation
Indices: 72426256--72426412 Score: 172
Period size: 27 Copynumber: 5.8 Consensus size: 27
72426246 GGGTATTTTG
* * ***
72426256 GTAATTTTGTAAACCGAGGGTATTTTA
1 GTAATTCTGTAAATCGAGGGTAAAATA
* *
72426283 GTAATTTTGTAAATCAAGGGTAAAATA
1 GTAATTCTGTAAATCGAGGGTAAAATA
* *
72426310 GTAATTTTGTAAATCAAGGGTAAAATA
1 GTAATTCTGTAAATCGAGGGTAAAATA
* * *
72426337 GTAATTCTATAAATTGAGGGTAAAATG
1 GTAATTCTGTAAATCGAGGGTAAAATA
*
72426364 GTAATTCCGTAAATCGAGGGTAAAA-A
1 GTAATTCTGTAAATCGAGGGTAAAATA
*
72426390 GATAATTCTATAAATCGAGGGTA
1 G-TAATTCTGTAAATCGAGGGTA
72426413 CTTTGGTAAT
Statistics
Matches: 113, Mismatches: 16, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
26 1 0.01
27 112 0.99
ACGTcount: A:0.40, C:0.06, G:0.21, T:0.32
Consensus pattern (27 bp):
GTAATTCTGTAAATCGAGGGTAAAATA
Found at i:72426339 original size:54 final size:54
Alignment explanation
Indices: 72426256--72426412 Score: 190
Period size: 54 Copynumber: 2.9 Consensus size: 54
72426246 GGGTATTTTG
* *** * * *
72426256 GTAATTTTGTAAACCGAGGGTATTTTAGTAATTTTGTAAATCAAGGGTAAAATA
1 GTAATTTTGTAAATCGAGGGTAAAATAGTAATTCTATAAATCGAGGGTAAAATA
* * *
72426310 GTAATTTTGTAAATCAAGGGTAAAATAGTAATTCTATAAATTGAGGGTAAAATG
1 GTAATTTTGTAAATCGAGGGTAAAATAGTAATTCTATAAATCGAGGGTAAAATA
**
72426364 GTAATTCCGTAAATCGAGGGTAAAA-AGATAATTCTATAAATCGAGGGTA
1 GTAATTTTGTAAATCGAGGGTAAAATAG-TAATTCTATAAATCGAGGGTA
72426413 CTTTGGTAAT
Statistics
Matches: 88, Mismatches: 14, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
53 2 0.02
54 86 0.98
ACGTcount: A:0.40, C:0.06, G:0.21, T:0.32
Consensus pattern (54 bp):
GTAATTTTGTAAATCGAGGGTAAAATAGTAATTCTATAAATCGAGGGTAAAATA
Found at i:72426356 original size:81 final size:81
Alignment explanation
Indices: 72426271--72426457 Score: 178
Period size: 81 Copynumber: 2.3 Consensus size: 81
72426261 TTTGTAAACC
* * *
72426271 GAGGGTATTTTAGTAATTTTGTAAATCAAGGGTAAAATAG-TAATTTTGTAAATCAAGGGTAAAA
1 GAGGGTATTTTAGTAATTTCGTAAATCAAGGGTAAAA-AGATAATTCTATAAATCAAGGGTAAAA
*
72426335 TAGTAATTCTATAAATT
65 TAGTAATTCTACAAATT
*** * * * * ***
72426352 GAGGGTAAAATGGTAATTCCGTAAATCGAGGGTAAAAAGATAATTCTATAAATCGAGGGTACTTT
1 GAGGGTATTTTAGTAATTTCGTAAATCAAGGGTAAAAAGATAATTCTATAAATCAAGGGTAAAAT
* * *
72426417 GGTAATTTTACAATTT
66 AGTAATTCTACAAATT
* * *
72426433 GAAGGTATTTCAGTAATTTGGTAAA
1 GAGGGTATTTTAGTAATTTCGTAAA
72426458 CTAAAGTATT
Statistics
Matches: 80, Mismatches: 25, Indels: 2
0.75 0.23 0.02
Matches are distributed among these distances:
80 2 0.03
81 78 0.98
ACGTcount: A:0.39, C:0.06, G:0.21, T:0.35
Consensus pattern (81 bp):
GAGGGTATTTTAGTAATTTCGTAAATCAAGGGTAAAAAGATAATTCTATAAATCAAGGGTAAAAT
AGTAATTCTACAAATT
Found at i:72428730 original size:31 final size:31
Alignment explanation
Indices: 72428687--72428765 Score: 149
Period size: 31 Copynumber: 2.5 Consensus size: 31
72428677 TTTAGCGGTT
72428687 ACTGGGCTGAAGCCTTTTCATAAATCATATC
1 ACTGGGCTGAAGCCTTTTCATAAATCATATC
*
72428718 ACTGGGCCGAAGCCTTTTCATAAATCATATC
1 ACTGGGCTGAAGCCTTTTCATAAATCATATC
72428749 ACTGGGCTGAAGCCTTT
1 ACTGGGCTGAAGCCTTT
72428766 ACTGTAAACG
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
31 46 1.00
ACGTcount: A:0.27, C:0.24, G:0.19, T:0.30
Consensus pattern (31 bp):
ACTGGGCTGAAGCCTTTTCATAAATCATATC
Found at i:72429061 original size:26 final size:26
Alignment explanation
Indices: 72428971--72429106 Score: 154
Period size: 26 Copynumber: 5.3 Consensus size: 26
72428961 CTGGAGGCCT
72428971 AGCCTCTTTT-AAT-AACTGGGGCA-A
1 AGCC-CTTTTCAATAAACTGGGGCATA
**
72428995 AGCCCTTTTCGGTAAACTGGGGCA-A
1 AGCCCTTTTCAATAAACTGGGGCATA
* *
72429020 AGCCCTTTACAATAAACTAGGGCATA
1 AGCCCTTTTCAATAAACTGGGGCATA
* ** *
72429046 AACCCTTTTCGGTAAACTAGGGCATA
1 AGCCCTTTTCAATAAACTGGGGCATA
*
72429072 AGCCTTTTTCAATAAACTGGGGCATA
1 AGCCCTTTTCAATAAACTGGGGCATA
72429098 AGCCCTTTT
1 AGCCCTTTT
72429107 GCACTTCCTC
Statistics
Matches: 93, Mismatches: 16, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
23 5 0.05
24 5 0.05
25 31 0.33
26 52 0.56
ACGTcount: A:0.29, C:0.23, G:0.20, T:0.28
Consensus pattern (26 bp):
AGCCCTTTTCAATAAACTGGGGCATA
Found at i:72429097 original size:52 final size:51
Alignment explanation
Indices: 72428971--72429106 Score: 188
Period size: 52 Copynumber: 2.7 Consensus size: 51
72428961 CTGGAGGCCT
*
72428971 AGCCTCTTTT-AAT-AACTGGGGCA-AAGCCCTTTTCGGTAAACTGGGGCAA
1 AGCCT-TTTTCAATAAACTGGGGCATAAGCCCTTTTCGGTAAACTAGGGCAA
* * * *
72429020 AGCCCTTTACAATAAACTAGGGCATAAACCCTTTTCGGTAAACTAGGGCATA
1 AGCCTTTTTCAATAAACTGGGGCATAAGCCCTTTTCGGTAAACTAGGGCA-A
72429072 AGCCTTTTTCAATAAACTGGGGCATAAGCCCTTTT
1 AGCCTTTTTCAATAAACTGGGGCATAAGCCCTTTT
72429107 GCACTTCCTC
Statistics
Matches: 74, Mismatches: 9, Indels: 5
0.84 0.10 0.06
Matches are distributed among these distances:
48 3 0.04
49 7 0.09
50 9 0.12
51 23 0.31
52 32 0.43
ACGTcount: A:0.29, C:0.23, G:0.20, T:0.28
Consensus pattern (51 bp):
AGCCTTTTTCAATAAACTGGGGCATAAGCCCTTTTCGGTAAACTAGGGCAA
Found at i:72429800 original size:35 final size:35
Alignment explanation
Indices: 72429754--72429823 Score: 131
Period size: 35 Copynumber: 2.0 Consensus size: 35
72429744 TATTACGAGG
*
72429754 GTTAGTACACACCTGTTACGGGTTGAAGTTGAAAC
1 GTTAGTACACACCTGTTACGGGTTGAAATTGAAAC
72429789 GTTAGTACACACCTGTTACGGGTTGAAATTGAAAC
1 GTTAGTACACACCTGTTACGGGTTGAAATTGAAAC
72429824 ATTTCCAAAA
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 34 1.00
ACGTcount: A:0.30, C:0.17, G:0.24, T:0.29
Consensus pattern (35 bp):
GTTAGTACACACCTGTTACGGGTTGAAATTGAAAC
Found at i:72430145 original size:27 final size:28
Alignment explanation
Indices: 72430010--72430368 Score: 237
Period size: 27 Copynumber: 13.2 Consensus size: 28
72430000 TCATCCTACA
* * * *
72430010 AGGGTGTTTTGGTAAATCTACAAACCA-
1 AGGGTATTTTGGTAATTTTACAAATCAG
* * *
72430037 AGGGTATTTTAGTAATTTTATTAAACCA-
1 AGGGTATTTTGGTAATTTTA-CAAATCAG
* *** * *
72430065 ATGGTATTTCCATAATTTTTAGAAAGTTA-
1 AGGGTATTTTGGTAA-TTTTACAAA-TCAG
* **
72430094 AGGGTATTTCT-GTAACTTTGTAAATCAG
1 AGGGTATTT-TGGTAATTTTACAAATCAG
*
72430122 A-GGTATTTTAGTAATTTTACAAATC-G
1 AGGGTATTTTGGTAATTTTACAAATCAG
* * *
72430148 AGGGTATTTCGGTAATTTCACAAACCAG
1 AGGGTATTTTGGTAATTTTACAAATCAG
*
72430176 -TGGTATTTTGGTAATTTTACAAA-CTAG
1 AGGGTATTTTGGTAATTTTACAAATC-AG
*
72430203 -GGGTATTTTGGTAATTTTACAAAT-TG
1 AGGGTATTTTGGTAATTTTACAAATCAG
* *
72430229 AGGGTATTTCGGTAATTTTACAAACCA-
1 AGGGTATTTTGGTAATTTTACAAATCAG
* * * *
72430256 AGGGTATTTTAGCAATTTTACAGA-C-T
1 AGGGTATTTTGGTAATTTTACAAATCAG
**
72430282 AGGGTATTTTGGTAATTTTACTGATC-G
1 AGGGTATTTTGGTAATTTTACAAATCAG
** *
72430309 AGGGTATTTTGGTAATTTTGTAAA-CCG
1 AGGGTATTTTGGTAATTTTACAAATCAG
* **
72430336 AGGGTATTTTAGTAATTTTGTAAATC-G
1 AGGGTATTTTGGTAATTTTACAAATCAG
72430363 AGGGTA
1 AGGGTA
72430369 AAATAGTAAT
Statistics
Matches: 269, Mismatches: 47, Indels: 32
0.77 0.14 0.09
Matches are distributed among these distances:
26 28 0.10
27 195 0.72
28 29 0.11
29 17 0.06
ACGTcount: A:0.31, C:0.09, G:0.21, T:0.40
Consensus pattern (28 bp):
AGGGTATTTTGGTAATTTTACAAATCAG
Found at i:72430181 original size:54 final size:53
Alignment explanation
Indices: 72430010--72430368 Score: 272
Period size: 54 Copynumber: 6.6 Consensus size: 53
72430000 TCATCCTACA
* * * * * * *
72430010 AGGGTGTTTTGGTAAATCTACAAACCAAGGGTATTTTAGTAATTTTATTAAACC
1 AGGGTATTTTGGTAATTTTACAAATCGAGGGTATTTTGGTAATTTTA-CAAACC
* *** * ** * ** *
72430064 AATGGTATTTCCATAATTTTTAGAAAGTTAAGGGTATTTCT-GTAACTTTGTAAATC
1 -AGGGTATTTTGGTAA-TTTTACAAA-TCGAGGGTATTT-TGGTAATTTTACAAACC
* * *
72430120 AGAGGTATTTTAGTAATTTTACAAATCGAGGGTATTTCGGTAATTTCACAAACC
1 AG-GGTATTTTGGTAATTTTACAAATCGAGGGTATTTTGGTAATTTTACAAACC
* **
72430174 AGTGGTATTTTGGTAATTTTACAAA-CTAGGGGTATTTTGGTAATTTTACAAATTG
1 AG-GGTATTTTGGTAATTTTACAAATCGA-GGGTATTTTGGTAATTTTACAAA-CC
* * * * * * *
72430229 AGGGTATTTCGGTAATTTTACAAACCAAGGGTATTTTAGCAATTTTACAGACT
1 AGGGTATTTTGGTAATTTTACAAATCGAGGGTATTTTGGTAATTTTACAAACC
** **
72430282 AGGGTATTTTGGTAATTTTACTGATCGAGGGTATTTTGGTAATTTTGTAAACC
1 AGGGTATTTTGGTAATTTTACAAATCGAGGGTATTTTGGTAATTTTACAAACC
* **
72430335 GAGGGTATTTTAGTAATTTTGTAAATCGAGGGTA
1 -AGGGTATTTTGGTAATTTTACAAATCGAGGGTA
72430369 AAATAGTAAT
Statistics
Matches: 239, Mismatches: 56, Indels: 19
0.76 0.18 0.06
Matches are distributed among these distances:
53 44 0.18
54 133 0.56
55 23 0.10
56 21 0.09
57 17 0.07
58 1 0.00
ACGTcount: A:0.31, C:0.09, G:0.21, T:0.40
Consensus pattern (53 bp):
AGGGTATTTTGGTAATTTTACAAATCGAGGGTATTTTGGTAATTTTACAAACC
Found at i:72430217 original size:81 final size:80
Alignment explanation
Indices: 72430123--72430354 Score: 331
Period size: 81 Copynumber: 2.9 Consensus size: 80
72430113 GTAAATCAGA
* * *
72430123 GGTATTTTAGTAATTTTACAAATCGAGGGTATTTCGGTAATTTCACAAACC-AGTGGTATTTTGG
1 GGTATTTTGGTAATTTTACAAATCGAGGGTATTTCGGTAATTTTACAAACCAAG-GGTATTTTAG
72430187 TAATTTTACAAACTAGG
65 TAATTTTACAAACTA-G
* *
72430204 GGTATTTTGGTAATTTTACAAATTGAGGGTATTTCGGTAATTTTACAAACCAAGGGTATTTTAGC
1 GGTATTTTGGTAATTTTACAAATCGAGGGTATTTCGGTAATTTTACAAACCAAGGGTATTTTAGT
*
72430269 AATTTTACAGACTAG
66 AATTTTACAAACTAG
** * ** *
72430284 GGTATTTTGGTAATTTTACTGATCGAGGGTATTTTGGTAATTTTGTAAACCGAGGGTATTTTAGT
1 GGTATTTTGGTAATTTTACAAATCGAGGGTATTTCGGTAATTTTACAAACCAAGGGTATTTTAGT
72430349 AATTTT
66 AATTTT
72430355 GTAAATCGAG
Statistics
Matches: 136, Mismatches: 14, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
80 64 0.47
81 70 0.51
82 2 0.01
ACGTcount: A:0.29, C:0.09, G:0.21, T:0.41
Consensus pattern (80 bp):
GGTATTTTGGTAATTTTACAAATCGAGGGTATTTCGGTAATTTTACAAACCAAGGGTATTTTAGT
AATTTTACAAACTAG
Found at i:72430486 original size:27 final size:27
Alignment explanation
Indices: 72430094--72430490 Score: 248
Period size: 27 Copynumber: 14.7 Consensus size: 27
72430084 TAGAAAGTTA
* *
72430094 AGGGTATTTCT-GTAACTTTGTAAATC-
1 AGGGTATTT-TGGTAATTTTATAAATCG
* *
72430120 AGAGGTATTTTAGTAATTTTACAAATCG
1 AG-GGTATTTTGGTAATTTTATAAATCG
* * * *
72430148 AGGGTATTTCGGTAATTTCACAAA-CC
1 AGGGTATTTTGGTAATTTTATAAATCG
* *
72430174 AGTGGTATTTTGGTAATTTTACAAA-CT
1 AG-GGTATTTTGGTAATTTTATAAATCG
* *
72430201 AGGGGTATTTTGGTAATTTTACAAATTG
1 A-GGGTATTTTGGTAATTTTATAAATCG
* * * *
72430229 AGGGTATTTCGGTAATTTTACAAACCA
1 AGGGTATTTTGGTAATTTTATAAATCG
* * * * *
72430256 AGGGTATTTTAGCAATTTTACAGA-CT
1 AGGGTATTTTGGTAATTTTATAAATCG
*
72430282 AGGGTATTTTGGTAATTTTACT-GATCG
1 AGGGTATTTTGGTAATTTTA-TAAATCG
* *
72430309 AGGGTATTTTGGTAATTTTGTAAACCG
1 AGGGTATTTTGGTAATTTTATAAATCG
* *
72430336 AGGGTATTTTAGTAATTTTGTAAATCG
1 AGGGTATTTTGGTAATTTTATAAATCG
*** * * *
72430363 AGGGTAAAATAGTAATTCTATAAATCA
1 AGGGTATTTTGGTAATTTTATAAATCG
*** * * *
72430390 AGGGTAAAATAGTAATTCTATAGATCG
1 AGGGTATTTTGGTAATTTTATAAATCG
**** * *
72430417 AGGGTAAAACGGTAATTCTGTAAATCG
1 AGGGTATTTTGGTAATTTTATAAATCG
**** * *
72430444 AGGGTAAAAAGATAATTCTATAAATCG
1 AGGGTATTTTGGTAATTTTATAAATCG
*
72430471 AGGGTACTTTGGTAATTTTA
1 AGGGTATTTTGGTAATTTTA
72430491 CAATTTGAAG
Statistics
Matches: 311, Mismatches: 51, Indels: 17
0.82 0.13 0.04
Matches are distributed among these distances:
26 28 0.09
27 279 0.90
28 4 0.01
ACGTcount: A:0.33, C:0.09, G:0.21, T:0.37
Consensus pattern (27 bp):
AGGGTATTTTGGTAATTTTATAAATCG
Found at i:72430513 original size:81 final size:80
Alignment explanation
Indices: 72430305--72430514 Score: 215
Period size: 81 Copynumber: 2.6 Consensus size: 80
72430295 AATTTTACTG
* * * * *
72430305 ATCGAGGGTATTTTGGTAATTTTGTAAACCGAGGGTATTTTAGTAATTTTGTAAATCGAGGGTAA
1 ATCGAGGGTAATTTGGTAATTTTAT-AATCGAGGGTATTTCAGTAATTCTGTAAATCGAGGGTAA
72430370 AATAGTAATTCTATAA
65 AATAGTAATTCTATAA
* ** * * *** *
72430386 ATCAAGGGTAAAATAGTAATTCTATAGATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAA
1 ATCGAGGGTAATTTGGTAATTTTATA-ATCGAGGGTATTTCAGTAATTCTGTAAATCGAGGGTAA
72430451 AA-AGATAATTCTATAA
65 AATAG-TAATTCTATAA
* * * *
72430467 ATCGAGGGTACTTTGGTAATTTTACAATTTGAAGGTATTTCAGTAATT
1 ATCGAGGGTAATTTGGTAATTTTATAA-TCGAGGGTATTTCAGTAATT
72430515 TGGTAAACTA
Statistics
Matches: 99, Mismatches: 27, Indels: 6
0.75 0.20 0.05
Matches are distributed among these distances:
80 4 0.04
81 95 0.96
ACGTcount: A:0.36, C:0.08, G:0.21, T:0.35
Consensus pattern (80 bp):
ATCGAGGGTAATTTGGTAATTTTATAATCGAGGGTATTTCAGTAATTCTGTAAATCGAGGGTAAA
ATAGTAATTCTATAA
Found at i:72434251 original size:29 final size:29
Alignment explanation
Indices: 72434188--72434255 Score: 93
Period size: 29 Copynumber: 2.3 Consensus size: 29
72434178 TAATCAACCG
72434188 CGCACACTTAGTGCCATGCACTTTAAACT
1 CGCACACTTAGTGCCATGCACTTTAAACT
* **
72434217 CACACACTTAGTGCCATGCA-TTTCAAGTT
1 CGCACACTTAGTGCCATGCACTTT-AAACT
72434246 CGCACACTTA
1 CGCACACTTA
72434256 CCTTTTCCGC
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
28 3 0.09
29 31 0.91
ACGTcount: A:0.28, C:0.31, G:0.13, T:0.28
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCACTTTAAACT
Found at i:72434367 original size:174 final size:174
Alignment explanation
Indices: 72434077--72434404 Score: 620
Period size: 174 Copynumber: 1.9 Consensus size: 174
72434067 AACTCAAGGT
* *
72434077 ACTTACCTTTTCCGCTGTCCAAAATTGACTCGGTAAAGTCGCACCCTTCATGTAAATAATTTATA
1 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
72434142 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGC
66 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGC
72434207 ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
131 ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
72434251 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
1 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
*
72434316 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGT
66 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGC
*
72434381 ACTTTAAACTCGCACACTTAGTGC
131 ACTTTAAACTCACACACTTAGTGC
72434405 TGTACAATTT
Statistics
Matches: 150, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
174 150 1.00
ACGTcount: A:0.31, C:0.25, G:0.15, T:0.30
Consensus pattern (174 bp):
ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGC
ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
Found at i:72434396 original size:29 final size:30
Alignment explanation
Indices: 72434357--72434435 Score: 110
Period size: 29 Copynumber: 2.7 Consensus size: 30
72434347 CTTAATAATC
72434357 AACCGCGCACACTTAGTGCCATGTAC-TTTA
1 AACC-CGCACACTTAGTGCCATGTACATTTA
*
72434387 AACTCGCACACTTAGTG-C-TGTACAATTTA
1 AACCCGCACACTTAGTGCCATGTAC-ATTTA
72434416 AACCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
72434436 ATCTCATGAC
Statistics
Matches: 43, Mismatches: 2, Indels: 7
0.83 0.04 0.13
Matches are distributed among these distances:
27 5 0.12
28 1 0.02
29 33 0.77
30 4 0.09
ACGTcount: A:0.29, C:0.30, G:0.15, T:0.25
Consensus pattern (30 bp):
AACCCGCACACTTAGTGCCATGTACATTTA
Found at i:72438946 original size:22 final size:23
Alignment explanation
Indices: 72438921--72438966 Score: 60
Period size: 23 Copynumber: 2.0 Consensus size: 23
72438911 CAACCAAATC
72438921 AATTCA-ACATATTT-TCAAGATA
1 AATTCATACATATTTAT-AAGATA
*
72438943 AATTCATGCATATTTATAAGATA
1 AATTCATACATATTTATAAGATA
72438966 A
1 A
72438967 CGTCATCACA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
22 6 0.29
23 14 0.67
24 1 0.05
ACGTcount: A:0.46, C:0.11, G:0.07, T:0.37
Consensus pattern (23 bp):
AATTCATACATATTTATAAGATA
Found at i:72438972 original size:23 final size:23
Alignment explanation
Indices: 72438928--72438972 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
72438918 ATCAATTCAA
*
72438928 CATATTTTCAAGATAAATTCATG
1 CATATTTTCAAGATAAAGTCATG
*
72438951 CATATTTAT-AAGATAACGTCAT
1 CATATTT-TCAAGATAAAGTCAT
72438973 CACATATCTA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 18 0.95
24 1 0.05
ACGTcount: A:0.40, C:0.13, G:0.09, T:0.38
Consensus pattern (23 bp):
CATATTTTCAAGATAAAGTCATG
Found at i:72444902 original size:96 final size:96
Alignment explanation
Indices: 72444618--72444869 Score: 495
Period size: 96 Copynumber: 2.6 Consensus size: 96
72444608 AAATATTTCA
*
72444618 TTATGAGCTAACCAAAACATACCTAAATCATAATCCTCAATTACCATTTGAAATTATACCAAAAC
1 TTATAAGCTAACCAAAACATACCTAAATCATAATCCTCAATTACCATTTGAAATTATACCAAAAC
72444683 ACTTAACCAAAATAGTTAAGTAGCATATTCC
66 ACTTAACCAAAATAGTTAAGTAGCATATTCC
72444714 TTATAAGCTAACCAAAACATACCTAAATCATAATCCTCAATTACCATTTGAAATTATACCAAAAC
1 TTATAAGCTAACCAAAACATACCTAAATCATAATCCTCAATTACCATTTGAAATTATACCAAAAC
72444779 ACTTAACCAAAATAGTTAAGTAGCATATTCC
66 ACTTAACCAAAATAGTTAAGTAGCATATTCC
72444810 TTATAAGCTAACCAAAACATACCTAAATCATAATCCTCAATTACCATTTGAAATTATACC
1 TTATAAGCTAACCAAAACATACCTAAATCATAATCCTCAATTACCATTTGAAATTATACC
72444870 GAACCTAATA
Statistics
Matches: 155, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
96 155 1.00
ACGTcount: A:0.44, C:0.22, G:0.05, T:0.29
Consensus pattern (96 bp):
TTATAAGCTAACCAAAACATACCTAAATCATAATCCTCAATTACCATTTGAAATTATACCAAAAC
ACTTAACCAAAATAGTTAAGTAGCATATTCC
Found at i:72448923 original size:27 final size:27
Alignment explanation
Indices: 72448893--72448948 Score: 103
Period size: 27 Copynumber: 2.1 Consensus size: 27
72448883 CAGACAATGT
72448893 AGAGAGTAATGCGTTGGCTCCTGCTGA
1 AGAGAGTAATGCGTTGGCTCCTGCTGA
*
72448920 AGAGAGTAATGCGTTGGCTTCTGCTGA
1 AGAGAGTAATGCGTTGGCTCCTGCTGA
72448947 AG
1 AG
72448949 GGACTGCGCC
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.23, C:0.16, G:0.34, T:0.27
Consensus pattern (27 bp):
AGAGAGTAATGCGTTGGCTCCTGCTGA
Found at i:72454374 original size:18 final size:18
Alignment explanation
Indices: 72454348--72454385 Score: 67
Period size: 18 Copynumber: 2.1 Consensus size: 18
72454338 CTTGGCCCAT
*
72454348 TACAGTAACAGTAAACAG
1 TACAATAACAGTAAACAG
72454366 TACAATAACAGTAAACAG
1 TACAATAACAGTAAACAG
72454384 TA
1 TA
72454386 TGCAAGTCCT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.53, C:0.16, G:0.13, T:0.18
Consensus pattern (18 bp):
TACAATAACAGTAAACAG
Found at i:72454867 original size:27 final size:26
Alignment explanation
Indices: 72454808--72454869 Score: 70
Period size: 27 Copynumber: 2.3 Consensus size: 26
72454798 GGTTACTGTA
*** *
72454808 GTCATTTTACCCTATAGGGTATTTTG
1 GTCATTTTACCCTATAGGGTAAAATC
*
72454834 GTTATTTTACCCTATGAGGGTAAAATC
1 GTCATTTTACCCTAT-AGGGTAAAATC
72454861 GTCATTTTA
1 GTCATTTTA
72454870 TCACATAAGG
Statistics
Matches: 29, Mismatches: 6, Indels: 1
0.81 0.17 0.03
Matches are distributed among these distances:
26 14 0.48
27 15 0.52
ACGTcount: A:0.24, C:0.15, G:0.18, T:0.44
Consensus pattern (26 bp):
GTCATTTTACCCTATAGGGTAAAATC
Found at i:72454880 original size:27 final size:27
Alignment explanation
Indices: 72454858--72455070 Score: 345
Period size: 27 Copynumber: 7.9 Consensus size: 27
72454848 TGAGGGTAAA
72454858 ATCGTCATTTTATCACATAAGGGCAAT
1 ATCGTCATTTTATCACATAAGGGCAAT
*
72454885 ATCGTTATTTTTATCACATAAGGGCAAT
1 ATCGTCA-TTTTATCACATAAGGGCAAT
* *
72454913 ATCGTTATTTTATCACATAAGGACAAT
1 ATCGTCATTTTATCACATAAGGGCAAT
* *
72454940 ATTGTCATTTTATCACATAAGGACAAT
1 ATCGTCATTTTATCACATAAGGGCAAT
**
72454967 ATCGTCATTTTATCACATAAGGATAAT
1 ATCGTCATTTTATCACATAAGGGCAAT
72454994 ATCGTCATTTTATCACATAAGGGCAAT
1 ATCGTCATTTTATCACATAAGGGCAAT
*
72455021 ATAGTCATTTTATCACATAAGGGCAAT
1 ATCGTCATTTTATCACATAAGGGCAAT
72455048 ATCGTCATTTTATCACATAAGGG
1 ATCGTCATTTTATCACATAAGGG
72455071 TTCAAGTACG
Statistics
Matches: 175, Mismatches: 10, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
27 148 0.85
28 27 0.15
ACGTcount: A:0.35, C:0.16, G:0.14, T:0.36
Consensus pattern (27 bp):
ATCGTCATTTTATCACATAAGGGCAAT
Found at i:72455429 original size:16 final size:16
Alignment explanation
Indices: 72455408--72455474 Score: 82
Period size: 16 Copynumber: 4.2 Consensus size: 16
72455398 ACAACCCACT
72455408 TTTTGGCTTTTCAGCC
1 TTTTGGCTTTTCAGCC
*
72455424 TTTTGGCTTTTCAG-G
1 TTTTGGCTTTTCAGCC
**
72455439 TTTTCGGCTTTTCAGGT
1 TTTT-GGCTTTTCAGCC
*
72455456 TTTTGGCTTTTCATCC
1 TTTTGGCTTTTCAGCC
72455472 TTT
1 TTT
72455475 GCAGTTTCAC
Statistics
Matches: 44, Mismatches: 5, Indels: 4
0.83 0.09 0.08
Matches are distributed among these distances:
15 4 0.09
16 36 0.82
17 4 0.09
ACGTcount: A:0.06, C:0.19, G:0.19, T:0.55
Consensus pattern (16 bp):
TTTTGGCTTTTCAGCC
Found at i:72455453 original size:32 final size:32
Alignment explanation
Indices: 72455407--72455468 Score: 97
Period size: 32 Copynumber: 1.9 Consensus size: 32
72455397 GACAACCCAC
*
72455407 TTTTTGGCTTTTCAGCCTTTTGGCTTTTCAGG
1 TTTTCGGCTTTTCAGCCTTTTGGCTTTTCAGG
**
72455439 TTTTCGGCTTTTCAGGTTTTTGGCTTTTCA
1 TTTTCGGCTTTTCAGCCTTTTGGCTTTTCA
72455469 TCCTTTGCAG
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
32 27 1.00
ACGTcount: A:0.06, C:0.18, G:0.21, T:0.55
Consensus pattern (32 bp):
TTTTCGGCTTTTCAGCCTTTTGGCTTTTCAGG
Found at i:72456999 original size:43 final size:43
Alignment explanation
Indices: 72456877--72457009 Score: 135
Period size: 43 Copynumber: 3.1 Consensus size: 43
72456867 AAACACATAT
* * * *
72456877 ATCACATA-CAATGCC-ATATACCAGATATGGTCTTACATGTT
1 ATCACATATCGATGCCAATATCCCAGATATGGTCTTACACGTA
** *
72456918 ATCACATATCGATGCCTCTATCCCAGATAGGGTCTTACACGTA
1 ATCACATATCGATGCCAATATCCCAGATATGGTCTTACACGTA
* * * * * *
72456961 ATCTCATATCGATGCCAATGTCCCAGACATGGTTTTACATGAA
1 ATCACATATCGATGCCAATATCCCAGATATGGTCTTACACGTA
72457004 ATCACA
1 ATCACA
72457010 CCTCAAAAGT
Statistics
Matches: 74, Mismatches: 16, Indels: 2
0.80 0.17 0.02
Matches are distributed among these distances:
41 8 0.11
42 6 0.08
43 60 0.81
ACGTcount: A:0.32, C:0.25, G:0.14, T:0.29
Consensus pattern (43 bp):
ATCACATATCGATGCCAATATCCCAGATATGGTCTTACACGTA
Found at i:72460580 original size:29 final size:29
Alignment explanation
Indices: 72460536--72460597 Score: 99
Period size: 29 Copynumber: 2.2 Consensus size: 29
72460526 GTGAGCATGA
*
72460536 ATAT-AATATGATTTGGGCCTAATGGGCC
1 ATATGAATATGAATTGGGCCTAATGGGCC
*
72460564 ATATGAATATGAATTGGGCCTAGTGGGCC
1 ATATGAATATGAATTGGGCCTAATGGGCC
72460593 ATATG
1 ATATG
72460598 CATGTATGTA
Statistics
Matches: 31, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
28 4 0.13
29 27 0.87
ACGTcount: A:0.29, C:0.13, G:0.27, T:0.31
Consensus pattern (29 bp):
ATATGAATATGAATTGGGCCTAATGGGCC
Found at i:72474027 original size:28 final size:28
Alignment explanation
Indices: 72473978--72474089 Score: 120
Period size: 28 Copynumber: 4.0 Consensus size: 28
72473968 GCATGAATAT
* *
72473978 AATATGATTTGGGCCTAATGGGCCATAG
1 AATATGAATTGGGCCTAGTGGGCCATAG
* *
72474006 AATGTGAATTGGGCCTAGTGGGTCATAAG
1 AATATGAATTGGGCCTAGTGGGCCAT-AG
* *
72474035 AATATAAATTGGGCCATA-TGGGCCATTTG
1 AATATGAATTGGGCC-TAGTGGGCCA-TAG
*
72474064 AATAAG-ATTGGGCCTAGTGGGCCATA
1 AATATGAATTGGGCCTAGTGGGCCATA
72474090 TGCATGTATG
Statistics
Matches: 69, Mismatches: 11, Indels: 9
0.78 0.12 0.10
Matches are distributed among these distances:
27 3 0.04
28 37 0.54
29 26 0.38
30 3 0.04
ACGTcount: A:0.29, C:0.13, G:0.29, T:0.28
Consensus pattern (28 bp):
AATATGAATTGGGCCTAGTGGGCCATAG
Found at i:72481685 original size:23 final size:23
Alignment explanation
Indices: 72481653--72481696 Score: 61
Period size: 23 Copynumber: 1.9 Consensus size: 23
72481643 AAAATTTCAC
* *
72481653 ACATGTAATTTCACATATAATAG
1 ACATGAAATTTAACATATAATAG
*
72481676 ACATGAAATTTAACATTTAAT
1 ACATGAAATTTAACATATAAT
72481697 TATTTTTTAG
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 18 1.00
ACGTcount: A:0.45, C:0.11, G:0.07, T:0.36
Consensus pattern (23 bp):
ACATGAAATTTAACATATAATAG
Found at i:72481821 original size:11 final size:12
Alignment explanation
Indices: 72481797--72481832 Score: 56
Period size: 11 Copynumber: 3.1 Consensus size: 12
72481787 TCTAAAGCAG
*
72481797 AGAAAAGGAAAA
1 AGAAAAAGAAAA
72481809 AGAAAAA-AAAA
1 AGAAAAAGAAAA
72481820 AGAAAAAGAAAA
1 AGAAAAAGAAAA
72481832 A
1 A
72481833 AGGAAGAGAA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
11 11 0.50
12 11 0.50
ACGTcount: A:0.83, C:0.00, G:0.17, T:0.00
Consensus pattern (12 bp):
AGAAAAAGAAAA
Found at i:72481834 original size:7 final size:6
Alignment explanation
Indices: 72481797--72481832 Score: 56
Period size: 6 Copynumber: 6.2 Consensus size: 6
72481787 TCTAAAGCAG
*
72481797 AGAAAA GGAAAA AGAAAA A-AAAA AGAAAA AGAAAA A
1 AGAAAA AGAAAA AGAAAA AGAAAA AGAAAA AGAAAA A
72481833 AGGAAGAGAA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
5 5 0.19
6 22 0.81
ACGTcount: A:0.83, C:0.00, G:0.17, T:0.00
Consensus pattern (6 bp):
AGAAAA
Found at i:72481844 original size:17 final size:17
Alignment explanation
Indices: 72481799--72481833 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 17
72481789 TAAAGCAGAG
*
72481799 AAAAGGAAAAAGAAAAA
1 AAAAAGAAAAAGAAAAA
72481816 AAAAAGAAAAAGAAAAA
1 AAAAAGAAAAAGAAAAA
72481833 A
1 A
72481834 GGAAGAGAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.86, C:0.00, G:0.14, T:0.00
Consensus pattern (17 bp):
AAAAAGAAAAAGAAAAA
Found at i:72481893 original size:39 final size:39
Alignment explanation
Indices: 72481847--72481926 Score: 160
Period size: 39 Copynumber: 2.1 Consensus size: 39
72481837 AGAGAAAGGA
72481847 TGAGGGACAGTGAGAGAAAAAAATGGGAAAATTTTAATG
1 TGAGGGACAGTGAGAGAAAAAAATGGGAAAATTTTAATG
72481886 TGAGGGACAGTGAGAGAAAAAAATGGGAAAATTTTAATG
1 TGAGGGACAGTGAGAGAAAAAAATGGGAAAATTTTAATG
72481925 TG
1 TG
72481927 GTTATTTAAA
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 41 1.00
ACGTcount: A:0.45, C:0.03, G:0.31, T:0.21
Consensus pattern (39 bp):
TGAGGGACAGTGAGAGAAAAAAATGGGAAAATTTTAATG
Found at i:72485357 original size:28 final size:28
Alignment explanation
Indices: 72485294--72485811 Score: 993
Period size: 28 Copynumber: 18.5 Consensus size: 28
72485284 ATATTAAGTC
* *
72485294 CGCACACTCAGTGCTATATAATCAA-CT
1 CGCACACTTAGTGCTACATAATCAAGCT
* *
72485321 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTACATAATCAAGCT
72485349 CGCACACTTAGTGCTACATAATCAAGCT
1 CGCACACTTAGTGCTACATAATCAAGCT
72485377 CGCACACTTAGTGCTACATAATCAAGCT
1 CGCACACTTAGTGCTACATAATCAAGCT
72485405 CGCACACTTAGTGCTACATAATCAAGCT
1 CGCACACTTAGTGCTACATAATCAAGCT
72485433 CGCACACTTAGTGCTACATAATCAAGCT
1 CGCACACTTAGTGCTACATAATCAAGCT
72485461 CGCACACTTAGTGCTACATAATCAAGCT
1 CGCACACTTAGTGCTACATAATCAAGCT
72485489 CGCACACTTAGTGCTACATAATCAAGCT
1 CGCACACTTAGTGCTACATAATCAAGCT
72485517 CGCACACTTAGTGCTACATAATCAAGCT
1 CGCACACTTAGTGCTACATAATCAAGCT
72485545 CGCACACTTAGTGCTACATAATCAAGCT
1 CGCACACTTAGTGCTACATAATCAAGCT
72485573 CGCACACTTAGTGCTACATAATCAAGCT
1 CGCACACTTAGTGCTACATAATCAAGCT
72485601 CGCACACTTAGTGCTACATAATCAAGCT
1 CGCACACTTAGTGCTACATAATCAAGCT
72485629 CGCACACTTAGTGCTACATAATCAAGCT
1 CGCACACTTAGTGCTACATAATCAAGCT
72485657 CGCACACTTAGTGCTACATAATCAAGCT
1 CGCACACTTAGTGCTACATAATCAAGCT
72485685 CGCACACTTAGTGCTACATAATCAAGCT
1 CGCACACTTAGTGCTACATAATCAAGCT
72485713 CGCACACTTAGTGCTACATAATCAAGCT
1 CGCACACTTAGTGCTACATAATCAAGCT
72485741 CGCACACTTAGTGCTACATAATCAAGCT
1 CGCACACTTAGTGCTACATAATCAAGCT
72485769 CGCACACTTAGTGCTACATAATCAAGCT
1 CGCACACTTAGTGCTACATAATCAAGCT
72485797 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
72485812 GTACAATTTA
Statistics
Matches: 487, Mismatches: 3, Indels: 1
0.99 0.01 0.00
Matches are distributed among these distances:
27 24 0.05
28 463 0.95
ACGTcount: A:0.32, C:0.29, G:0.14, T:0.25
Consensus pattern (28 bp):
CGCACACTTAGTGCTACATAATCAAGCT
Found at i:72486380 original size:73 final size:73
Alignment explanation
Indices: 72486297--72486444 Score: 269
Period size: 73 Copynumber: 2.0 Consensus size: 73
72486287 TATGTATATA
*
72486297 TACATATATATGTATATATATATACTTCGGAATGGGCATCACAATTAGATTTAACACCCCCTTCA
1 TACATATATATGTATATATATATACTTCGGAATGGGCATCACAATTAGATTTAACACCACCTTCA
72486362 TACTCAAT
66 TACTCAAT
* *
72486370 TACATATATATGTATATATATGTACTTCGGAATGGGGATCACAATTAGATTTAACACCACCTTCA
1 TACATATATATGTATATATATATACTTCGGAATGGGCATCACAATTAGATTTAACACCACCTTCA
72486435 TACTCAAT
66 TACTCAAT
72486443 TA
1 TA
72486445 GATGGCTGAA
Statistics
Matches: 72, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
73 72 1.00
ACGTcount: A:0.36, C:0.19, G:0.11, T:0.34
Consensus pattern (73 bp):
TACATATATATGTATATATATATACTTCGGAATGGGCATCACAATTAGATTTAACACCACCTTCA
TACTCAAT
Found at i:72499977 original size:27 final size:28
Alignment explanation
Indices: 72499893--72500045 Score: 238
Period size: 27 Copynumber: 5.5 Consensus size: 28
72499883 CATGAGATTG
* * * *
72499893 GCACTAAGTGTGCGGGTTTAAATTGTTTA
1 GCACTAAGTGTGCGAGTTT-GATTATATA
72499922 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
72499950 GCACTAAGTGTGCGAG-TTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
72499977 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
72500005 GCACTAAGTGTGCGAG-TTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
72500032 GCACTGAGTGTGCG
1 GCACTAAGTGTGCG
72500046 GACTTAATAT
Statistics
Matches: 118, Mismatches: 5, Indels: 4
0.93 0.04 0.03
Matches are distributed among these distances:
27 51 0.43
28 49 0.42
29 18 0.15
ACGTcount: A:0.27, C:0.12, G:0.27, T:0.34
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:72499988 original size:55 final size:55
Alignment explanation
Indices: 72499893--72500045 Score: 243
Period size: 55 Copynumber: 2.7 Consensus size: 55
72499883 CATGAGATTG
* * * *
72499893 GCACTAAGTGTGCGGGTTTAAATTGTTTAGCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAG-TT-GATTATATAGCACTAAGTGTGCGAGTTTGATTATATA
72499950 GCACTAAGTGTGCGAGTTGATTATATAGCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTGATTATATAGCACTAAGTGTGCGAGTTTGATTATATA
*
72500005 GCACTAAGTGTGCGAGTTGATTATATAGCACTGAGTGTGCG
1 GCACTAAGTGTGCGAGTTGATTATATAGCACTAAGTGTGCG
72500046 GACTTAATAT
Statistics
Matches: 91, Mismatches: 5, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
55 74 0.81
56 2 0.02
57 15 0.16
ACGTcount: A:0.27, C:0.12, G:0.27, T:0.34
Consensus pattern (55 bp):
GCACTAAGTGTGCGAGTTGATTATATAGCACTAAGTGTGCGAGTTTGATTATATA
Found at i:72502412 original size:21 final size:21
Alignment explanation
Indices: 72502361--72502414 Score: 99
Period size: 21 Copynumber: 2.6 Consensus size: 21
72502351 ACAGAATTAA
*
72502361 AAGAATTGAAAGCTCAGTTGC
1 AAGAATTGAGAGCTCAGTTGC
72502382 AAGAATTGAGAGCTCAGTTGC
1 AAGAATTGAGAGCTCAGTTGC
72502403 AAGAATTGAGAG
1 AAGAATTGAGAG
72502415 ATAGAGGTTT
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
21 32 1.00
ACGTcount: A:0.39, C:0.11, G:0.28, T:0.22
Consensus pattern (21 bp):
AAGAATTGAGAGCTCAGTTGC
Found at i:72504690 original size:58 final size:58
Alignment explanation
Indices: 72504600--72504717 Score: 200
Period size: 58 Copynumber: 2.0 Consensus size: 58
72504590 AAACGTAAAG
*
72504600 ACATAAAATTTCAGATTGGAGATAAAGTCTTCTTAAAAGCCTCACCATGGAGGAAAAT
1 ACATAAAATTTCAGATTGGAGATAAAGTCTTCTTAAAAGCCTCACCATGGAAGAAAAT
* * *
72504658 ACATAGAATTTTAGATTGGAGATAAAGTCTTCTTGAAAGCCTCACCATGGAAGAAAAT
1 ACATAAAATTTCAGATTGGAGATAAAGTCTTCTTAAAAGCCTCACCATGGAAGAAAAT
72504716 AC
1 AC
72504718 TCAGATTTGG
Statistics
Matches: 56, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
58 56 1.00
ACGTcount: A:0.41, C:0.15, G:0.18, T:0.26
Consensus pattern (58 bp):
ACATAAAATTTCAGATTGGAGATAAAGTCTTCTTAAAAGCCTCACCATGGAAGAAAAT
Found at i:72506705 original size:54 final size:54
Alignment explanation
Indices: 72506646--72506751 Score: 203
Period size: 54 Copynumber: 2.0 Consensus size: 54
72506636 GCATACGCGC
*
72506646 GACATTTATAAAACAAGTCTAATATTCAATAATGAAGTTGTGGATGTGTTCCGT
1 GACATTTATAAAACAAGTCTAATATTCAATAATGAAGTTATGGATGTGTTCCGT
72506700 GACATTTATAAAACAAGTCTAATATTCAATAATGAAGTTATGGATGTGTTCC
1 GACATTTATAAAACAAGTCTAATATTCAATAATGAAGTTATGGATGTGTTCC
72506752 ATGTTCTGTA
Statistics
Matches: 51, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
54 51 1.00
ACGTcount: A:0.37, C:0.11, G:0.17, T:0.35
Consensus pattern (54 bp):
GACATTTATAAAACAAGTCTAATATTCAATAATGAAGTTATGGATGTGTTCCGT
Found at i:72508057 original size:25 final size:25
Alignment explanation
Indices: 72508029--72508098 Score: 113
Period size: 25 Copynumber: 2.8 Consensus size: 25
72508019 CTCTTTTAAT
*
72508029 AACTGGGGCAAAGCCCTTTTTGATA
1 AACTGGGGCAAAGCCCTTTTCGATA
*
72508054 AACTGGGGCAAAGCCCTTTTCGGTA
1 AACTGGGGCAAAGCCCTTTTCGATA
*
72508079 AACTGGGGCATAGCCCTTTT
1 AACTGGGGCAAAGCCCTTTT
72508099 AGCACTTCCT
Statistics
Matches: 42, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
25 42 1.00
ACGTcount: A:0.24, C:0.23, G:0.26, T:0.27
Consensus pattern (25 bp):
AACTGGGGCAAAGCCCTTTTCGATA
Found at i:72509847 original size:27 final size:26
Alignment explanation
Indices: 72509803--72509854 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
72509793 CTCGCTGAAA
*
72509803 TCTGGTGGCCTCGCCACATATATCTGT
1 TCTGGTGACCTCGCCACA-ATATCTGT
* *
72509830 TCTGGTGACTTCGTCACAATATCTG
1 TCTGGTGACCTCGCCACAATATCTG
72509855 GCAGCCTCGC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.17, C:0.27, G:0.21, T:0.35
Consensus pattern (26 bp):
TCTGGTGACCTCGCCACAATATCTGT
Found at i:72514265 original size:25 final size:25
Alignment explanation
Indices: 72514237--72514313 Score: 72
Period size: 25 Copynumber: 3.2 Consensus size: 25
72514227 TGATGAATGT
*
72514237 GAATGTGTATATATGAGATAAGGTC
1 GAATGTGCATATATGAGATAAGGTC
* *
72514262 GAATG-GCA-A-ATGTGATGAATGT-
1 GAATGTGCATATATGAGAT-AAGGTC
**
72514284 GAACATGCATATATGAGATAAGGTC
1 GAATGTGCATATATGAGATAAGGTC
72514309 GAATG
1 GAATG
72514314 GCCAATGTGA
Statistics
Matches: 38, Mismatches: 9, Indels: 10
0.67 0.16 0.18
Matches are distributed among these distances:
22 9 0.24
23 8 0.21
24 7 0.18
25 14 0.37
ACGTcount: A:0.38, C:0.06, G:0.29, T:0.27
Consensus pattern (25 bp):
GAATGTGCATATATGAGATAAGGTC
Found at i:72514278 original size:47 final size:47
Alignment explanation
Indices: 72514224--72514602 Score: 530
Period size: 47 Copynumber: 8.1 Consensus size: 47
72514214 TTAGGATTTT
** * * *
72514224 ATGTGATGAATGTGAATGTGTATATATGAGATAAGGTCGAATGGCAA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGTCGAATGGCCA
*
72514271 ATGTGATGAATGTGAACATGCATATATGAGATAAGGTCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGTCGAATGGCCA
* *
72514318 ATGTGATGAATGTGAACATGCATATATGTAATAAGGTCGAATGCCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGTCGAATGGCCA
* *
72514365 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGTCGAATGGCCA
*
72514412 ATGTGATGAATGTGAACATGCATATCTGTGATAAGG-CTGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGTC-GAATGGCCA
* * *
72514459 ATATGATGAATGTGAATATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGTCGAATGGCCA
72514506 ATGTGATGAATGTGAACATGCATATATGTGATAAGG-CAGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGTC-GAATGGCCA
* * * * * *
72514553 ATGTGATGAACGTGGAA-GTGTATATATGTGGTAAAGTCGAATGGCTA
1 ATGTGATGAATGT-GAACATGCATATATGTGATAAGGTCGAATGGCCA
72514600 ATG
1 ATG
72514603 CAAAATGTGT
Statistics
Matches: 304, Mismatches: 23, Indels: 10
0.90 0.07 0.03
Matches are distributed among these distances:
46 2 0.01
47 297 0.98
48 5 0.02
ACGTcount: A:0.35, C:0.10, G:0.28, T:0.27
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGTCGAATGGCCA
Found at i:72514559 original size:22 final size:22
Alignment explanation
Indices: 72514484--72514559 Score: 59
Period size: 22 Copynumber: 3.3 Consensus size: 22
72514474 ATATGCATAT
*
72514484 ATGTGATAAGGCCGAATGGCCA
1 ATGTGATAAGGCAGAATGGCCA
*
72514506 ATGTGATGAATGTG-A-ACAT-GCATA
1 ATGTGAT-AA-G-GCAGA-ATGGC-CA
72514530 TATGTGATAAGGCAGAATGGCCA
1 -ATGTGATAAGGCAGAATGGCCA
72514553 ATGTGAT
1 ATGTGAT
72514560 GAACGTGGAA
Statistics
Matches: 42, Mismatches: 3, Indels: 18
0.67 0.05 0.29
Matches are distributed among these distances:
22 15 0.36
23 10 0.24
24 9 0.21
25 8 0.19
ACGTcount: A:0.34, C:0.12, G:0.29, T:0.25
Consensus pattern (22 bp):
ATGTGATAAGGCAGAATGGCCA
Found at i:72514632 original size:46 final size:46
Alignment explanation
Indices: 72514576--72514758 Score: 258
Period size: 46 Copynumber: 4.0 Consensus size: 46
72514566 GGAAGTGTAT
* * *
72514576 ATATGTGGTAAAGTCGAATGGCTAATGCAAAATGTGTATGAGATGG
1 ATATGAGGTAAAGCCGAATGGCTAATGCGAAATGTGTATGAGATGG
* *
72514622 ATATGAGGTAAAGCCGAATGGTTCATGCGAAATGTGTATGAGATGG
1 ATATGAGGTAAAGCCGAATGGCTAATGCGAAATGTGTATGAGATGG
*
72514668 ATATGAGGTAAAGCCGAATGGCTAATGCGAAACGTGTATGAGATGG
1 ATATGAGGTAAAGCCGAATGGCTAATGCGAAATGTGTATGAGATGG
* ** * * *
72514714 ATATGTGGTAAAGCTAAATGGCTAATGTGAGATATGTATGAGATG
1 ATATGAGGTAAAGCCGAATGGCTAATGCGAAATGTGTATGAGATG
72514759 TGTATATATA
Statistics
Matches: 122, Mismatches: 15, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
46 122 1.00
ACGTcount: A:0.34, C:0.08, G:0.31, T:0.27
Consensus pattern (46 bp):
ATATGAGGTAAAGCCGAATGGCTAATGCGAAATGTGTATGAGATGG
Found at i:72521480 original size:27 final size:27
Alignment explanation
Indices: 72521450--72521514 Score: 121
Period size: 27 Copynumber: 2.4 Consensus size: 27
72521440 TGGCCTAGCT
72521450 ACAATATCTGTATCTGGTGACTTCGTC
1 ACAATATCTGTATCTGGTGACTTCGTC
72521477 ACAATATCTGTATCTGGTGACTTCGTC
1 ACAATATCTGTATCTGGTGACTTCGTC
*
72521504 ACAATTTCTGT
1 ACAATATCTGT
72521515 GGTGTGTAGC
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
27 37 1.00
ACGTcount: A:0.23, C:0.22, G:0.17, T:0.38
Consensus pattern (27 bp):
ACAATATCTGTATCTGGTGACTTCGTC
Found at i:72522142 original size:62 final size:62
Alignment explanation
Indices: 72522045--72522170 Score: 243
Period size: 62 Copynumber: 2.0 Consensus size: 62
72522035 ACCGAACTCA
72522045 CCCTTTATTTTCATCTCTGCAGAAAATCCCCAACCATAGTGGGATTGGAGCTGTGAGGGATT
1 CCCTTTATTTTCATCTCTGCAGAAAATCCCCAACCATAGTGGGATTGGAGCTGTGAGGGATT
*
72522107 CCCTTTATTTTCATCTCTGCAGAAAATCCCCAACCATAGTGGGCTTGGAGCTGTGAGGGATT
1 CCCTTTATTTTCATCTCTGCAGAAAATCCCCAACCATAGTGGGATTGGAGCTGTGAGGGATT
72522169 CC
1 CC
72522171 GAGTGGCCAC
Statistics
Matches: 63, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
62 63 1.00
ACGTcount: A:0.23, C:0.25, G:0.22, T:0.30
Consensus pattern (62 bp):
CCCTTTATTTTCATCTCTGCAGAAAATCCCCAACCATAGTGGGATTGGAGCTGTGAGGGATT
Found at i:72522958 original size:27 final size:27
Alignment explanation
Indices: 72522561--72522951 Score: 593
Period size: 27 Copynumber: 14.5 Consensus size: 27
72522551 GGGTGTTACA
* *
72522561 TCTACCCTATAAGGGTATTTCGGTAAT
1 TCTACCCTACAGGGGTATTTCGGTAAT
*
72522588 TCTACCCTACAGGGGTATTTCAGTAAT
1 TCTACCCTACAGGGGTATTTCGGTAAT
72522615 TCTACCCTACAGGGGTATTTCGGTAAT
1 TCTACCCTACAGGGGTATTTCGGTAAT
* *
72522642 TCTACCCTACAGGGTTATTTCAGTAAT
1 TCTACCCTACAGGGGTATTTCGGTAAT
* *
72522669 TCTACCATACAGGGGTATTTCAGTAAT
1 TCTACCCTACAGGGGTATTTCGGTAAT
*
72522696 TCTACCCTACAAGGGTATTTCGGTAAT
1 TCTACCCTACAGGGGTATTTCGGTAAT
* *
72522723 TCTACCCTACAGGGTTATTTCAGTAAT
1 TCTACCCTACAGGGGTATTTCGGTAAT
* *
72522750 CCTACCCTACAGGGGTATTTCGGTATT
1 TCTACCCTACAGGGGTATTTCGGTAAT
* *
72522777 TCTACCTTACAAGGGTATTTCGGTAAT
1 TCTACCCTACAGGGGTATTTCGGTAAT
*
72522804 TCTACCCTACAGGGGTATTTCAGTAAT
1 TCTACCCTACAGGGGTATTTCGGTAAT
72522831 TCTACCCTACAGGGGTATTTCGGTAAT
1 TCTACCCTACAGGGGTATTTCGGTAAT
* *
72522858 TCTACCCTACAGGGTTATTTCAGTAAT
1 TCTACCCTACAGGGGTATTTCGGTAAT
*
72522885 TCTACCCTACAGGGGTATTTCGGTAAC
1 TCTACCCTACAGGGGTATTTCGGTAAT
* *
72522912 TCTACCCTACAAGGGTATTTTGGTAAT
1 TCTACCCTACAGGGGTATTTCGGTAAT
*
72522939 TCTACGCTACAGG
1 TCTACCCTACAGG
72522952 CACATTTCGA
Statistics
Matches: 328, Mismatches: 36, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 328 1.00
ACGTcount: A:0.25, C:0.22, G:0.19, T:0.34
Consensus pattern (27 bp):
TCTACCCTACAGGGGTATTTCGGTAAT
Found at i:72523060 original size:27 final size:27
Alignment explanation
Indices: 72523004--72523089 Score: 82
Period size: 27 Copynumber: 3.2 Consensus size: 27
72522994 CACAAATCAG
* ***
72523004 GGGTATTTTGGTAATTTTGTAAACCAA
1 GGGTATTTCGGTAATTTTGTAAATTGA
*
72523031 GGGTATTTCAGTAATTTTGTAAATTGA
1 GGGTATTTCGGTAATTTTGTAAATTGA
*** * *
72523058 GGGTAAAACGGTAATTCTATAAATTGA
1 GGGTATTTCGGTAATTTTGTAAATTGA
72523085 GGGTA
1 GGGTA
72523090 AAATGGTAAT
Statistics
Matches: 48, Mismatches: 11, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
27 48 1.00
ACGTcount: A:0.33, C:0.06, G:0.24, T:0.37
Consensus pattern (27 bp):
GGGTATTTCGGTAATTTTGTAAATTGA
Found at i:72523098 original size:81 final size:80
Alignment explanation
Indices: 72523012--72523278 Score: 284
Period size: 81 Copynumber: 3.3 Consensus size: 80
72523002 AGGGGTATTT
* ** * * * *
72523012 TGGTAATTTTGTAAACCAAGGGTATTTCAGTAATTTTGTAAATTGAGGGTAAAACGGTAATTCTA
1 TGGTAATTCTGTAAACCAAGGGTAAAT-GGTAATTCTATAAATCGAGGGTAAAACGGTAATTCTA
72523077 TAAATTGAGGGTAAAA
65 TAAATTGAGGGTAAAA
* * * * * *
72523093 TGGTAATTCTGTAAATCGAGTGTAAAATGGTAATTCTATAAATCGAGGATAAAACGATAATTCTG
1 TGGTAATTCTGTAAACCAAGGGT-AAATGGTAATTCTATAAATCGAGGGTAAAACGGTAATTCTA
72523158 TAAATTGAGGGTAAAA
65 TAAATTGAGGGTAAAA
* * * * *
72523174 TGGTAATTCTGTAAATCGAA-AGTAAAACGGTAATTCTATAAATCGAGGGTAAAATGGTAATGCT
1 TGGTAATTCTGTAAA-CCAAGGGT-AAATGGTAATTCTATAAATCGAGGGTAAAACGGTAATTCT
* *
72523238 ATAAATCGAGGATAAAA
64 ATAAATTGAGGGTAAAA
* * *
72523255 CGGTAATTCTGTAAATCGAGGGTA
1 TGGTAATTCTGTAAACCAAGGGTA
72523279 CTTTGGTAAT
Statistics
Matches: 153, Mismatches: 30, Indels: 7
0.81 0.16 0.04
Matches are distributed among these distances:
80 2 0.01
81 148 0.97
82 3 0.02
ACGTcount: A:0.39, C:0.08, G:0.22, T:0.31
Consensus pattern (80 bp):
TGGTAATTCTGTAAACCAAGGGTAAATGGTAATTCTATAAATCGAGGGTAAAACGGTAATTCTAT
AAATTGAGGGTAAAA
Found at i:72523288 original size:54 final size:54
Alignment explanation
Indices: 72523041--72523278 Score: 343
Period size: 54 Copynumber: 4.4 Consensus size: 54
72523031 GGGTATTTCA
* * * * * *
72523041 GTAATTTTGTAAATTGAGGGTAAAACGGTAATTCTATAAATTGAGGGTAAAATG
1 GTAATTCTGTAAATCGAGGGTAAAATGGTAATTCTATAAATCGAGGATAAAACG
*
72523095 GTAATTCTGTAAATCGAGTGTAAAATGGTAATTCTATAAATCGAGGATAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAATGGTAATTCTATAAATCGAGGATAAAACG
* * * *
72523149 ATAATTCTGTAAATTGAGGGTAAAATGGTAATTCTGTAAATCGA-AAGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAATGGTAATTCTATAAATCGAGGA-TAAAACG
* *
72523203 GTAATTCTATAAATCGAGGGTAAAATGGTAATGCTATAAATCGAGGATAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAATGGTAATTCTATAAATCGAGGATAAAACG
72523257 GTAATTCTGTAAATCGAGGGTA
1 GTAATTCTGTAAATCGAGGGTA
72523279 CTTTGGTAAT
Statistics
Matches: 163, Mismatches: 19, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
53 1 0.01
54 161 0.99
55 1 0.01
ACGTcount: A:0.40, C:0.08, G:0.22, T:0.30
Consensus pattern (54 bp):
GTAATTCTGTAAATCGAGGGTAAAATGGTAATTCTATAAATCGAGGATAAAACG
Found at i:72523289 original size:27 final size:27
Alignment explanation
Indices: 72523041--72523278 Score: 305
Period size: 27 Copynumber: 8.8 Consensus size: 27
72523031 GGGTATTTCA
* * *
72523041 GTAATTTTGTAAATTGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAATG
* *
72523068 GTAATTCTATAAATTGAGGGTAAAATG
1 GTAATTCTGTAAATCGAGGGTAAAATG
*
72523095 GTAATTCTGTAAATCGAGTGTAAAATG
1 GTAATTCTGTAAATCGAGGGTAAAATG
* * *
72523122 GTAATTCTATAAATCGAGGATAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAATG
* *
72523149 ATAATTCTGTAAATTGAGGGTAAAATG
1 GTAATTCTGTAAATCGAGGGTAAAATG
** *
72523176 GTAATTCTGTAAATCGAAAGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAATG
*
72523203 GTAATTCTATAAATCGAGGGTAAAATG
1 GTAATTCTGTAAATCGAGGGTAAAATG
* * * *
72523230 GTAATGCTATAAATCGAGGATAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAATG
72523257 GTAATTCTGTAAATCGAGGGTA
1 GTAATTCTGTAAATCGAGGGTA
72523279 CTTTGGTAAT
Statistics
Matches: 181, Mismatches: 30, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 181 1.00
ACGTcount: A:0.40, C:0.08, G:0.22, T:0.30
Consensus pattern (27 bp):
GTAATTCTGTAAATCGAGGGTAAAATG
Found at i:72523289 original size:81 final size:81
Alignment explanation
Indices: 72523041--72523278 Score: 341
Period size: 81 Copynumber: 2.9 Consensus size: 81
72523031 GGGTATTTCA
* * *
72523041 GTAATTTTGTAAATTGAGGGTAAAACGGTAATTCTATAAATTGAGGGTAAAATGGTAATTCTGTA
1 GTAATTCTATAAATCGAGGGTAAAACGGTAATTCTATAAATTGAGGGTAAAATGGTAATTCTGTA
*
72523106 AATCGAGTGTAAAATG
66 AATCGAGGGTAAAATG
* * *
72523122 GTAATTCTATAAATCGAGGATAAAACGATAATTCTGTAAATTGAGGGTAAAATGGTAATTCTGTA
1 GTAATTCTATAAATCGAGGGTAAAACGGTAATTCTATAAATTGAGGGTAAAATGGTAATTCTGTA
** *
72523187 AATCGAAAGTAAAACG
66 AATCGAGGGTAAAATG
* * * * *
72523203 GTAATTCTATAAATCGAGGGTAAAATGGTAATGCTATAAATCGAGGATAAAACGGTAATTCTGTA
1 GTAATTCTATAAATCGAGGGTAAAACGGTAATTCTATAAATTGAGGGTAAAATGGTAATTCTGTA
72523268 AATCGAGGGTA
66 AATCGAGGGTA
72523279 CTTTGGTAAT
Statistics
Matches: 138, Mismatches: 19, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
81 138 1.00
ACGTcount: A:0.40, C:0.08, G:0.22, T:0.30
Consensus pattern (81 bp):
GTAATTCTATAAATCGAGGGTAAAACGGTAATTCTATAAATTGAGGGTAAAATGGTAATTCTGTA
AATCGAGGGTAAAATG
Found at i:72538127 original size:15 final size:16
Alignment explanation
Indices: 72538091--72538129 Score: 55
Period size: 14 Copynumber: 2.6 Consensus size: 16
72538081 GCATATTTTC
72538091 ATTCAAACATTACCAT
1 ATTCAAACATTACCAT
*
72538107 A-CCAAA-ATTACCAT
1 ATTCAAACATTACCAT
72538121 ATTCAAACA
1 ATTCAAACA
72538130 CATATATACA
Statistics
Matches: 19, Mismatches: 2, Indels: 4
0.76 0.08 0.16
Matches are distributed among these distances:
14 9 0.47
15 8 0.42
16 2 0.11
ACGTcount: A:0.49, C:0.26, G:0.00, T:0.26
Consensus pattern (16 bp):
ATTCAAACATTACCAT
Found at i:72538827 original size:23 final size:22
Alignment explanation
Indices: 72538725--72538854 Score: 109
Period size: 23 Copynumber: 5.5 Consensus size: 22
72538715 GAGTCATGGT
72538725 CAGTAAGCTCTTACTGAGCTGATAAA
1 CAGTAAGCTCTT--TGAGCTG--AAA
*
72538751 CAGTAAGCTCTATTGAGCTAAAAA
1 CAGTAAGCTCT-TTGAGCT-GAAA
* *
72538775 CGGTAAGCTCTATTGAACT-AAA
1 CAGTAAGCTCT-TTGAGCTGAAA
*
72538797 CAGTAAGCTCTTTCGAGCTGAAT
1 CAGTAAGCTCTTT-GAGCTGAAA
* **
72538820 CAGTAAGCCCCAATGAGCTGAAA
1 CAGTAAG-CTCTTTGAGCTGAAA
72538843 CAGTAAGCTCTT
1 CAGTAAGCTCTT
72538855 ACAAGCTATG
Statistics
Matches: 86, Mismatches: 13, Indels: 14
0.76 0.12 0.12
Matches are distributed among these distances:
21 2 0.02
22 19 0.22
23 24 0.28
24 23 0.27
25 6 0.07
26 11 0.13
27 1 0.01
ACGTcount: A:0.35, C:0.21, G:0.19, T:0.25
Consensus pattern (22 bp):
CAGTAAGCTCTTTGAGCTGAAA
Found at i:72542708 original size:46 final size:51
Alignment explanation
Indices: 72542658--72542837 Score: 130
Period size: 53 Copynumber: 3.6 Consensus size: 51
72542648 TAGCCGTGCC
* *
72542658 ATGGTCTTACATGG-ATCACA-TAT-A-AT-ACCGATGCCATATCCCAGAT
1 ATGGTCTTACACGGAATCACATTATCACATCACCGATGCCATAGCCCAGAT
* *
72542704 ATGGTCTTATACGGAATCACATTATCACATCACACCGATGCCATAGCCCAGCT
1 ATGGTCTTACACGGAATCACATTATCACAT--CACCGATGCCATAGCCCAGAT
** *
72542757 ATGGTCTTTTACGGGAA-CAC-GTATCACATTGCACCGATGCCATA-CCCA-ACT
1 ATGGTCTTACAC-GGAATCACATTATCACA-T-CACCGATGCCATAGCCCAGA-T
* * *
72542808 ATAGTCTTAAACGGGCA-CACA-TATCACATC
1 ATGGTCTTACAC-GGAATCACATTATCACATC
72542838 TTTTCCGTCA
Statistics
Matches: 111, Mismatches: 12, Indels: 19
0.78 0.08 0.13
Matches are distributed among these distances:
46 12 0.11
47 6 0.05
48 3 0.03
49 2 0.02
50 3 0.03
51 28 0.25
52 20 0.18
53 33 0.30
54 4 0.04
ACGTcount: A:0.31, C:0.28, G:0.16, T:0.26
Consensus pattern (51 bp):
ATGGTCTTACACGGAATCACATTATCACATCACCGATGCCATAGCCCAGAT
Found at i:72542836 original size:51 final size:52
Alignment explanation
Indices: 72542684--72542837 Score: 179
Period size: 53 Copynumber: 3.0 Consensus size: 52
72542674 CACATATAAT
*
72542684 ACCGATGCCATATCCCAGA-TATGGTCTTATAC-GGAATCACATTATCACATCAC
1 ACCGATGCCATAGCCCA-ACTATGGTCTTATACGGGAA-CACA-TATCACATCAC
* * * **
72542737 ACCGATGCCATAGCCCAGCTATGGTCTTTTACGGGAACACGTATCACATTGC
1 ACCGATGCCATAGCCCAACTATGGTCTTATACGGGAACACATATCACATCAC
* * *
72542789 ACCGATGCCATA-CCCAACTATAGTCTTAAACGGGCACACATATCACATC
1 ACCGATGCCATAGCCCAACTATGGTCTTATACGGGAACACATATCACATC
72542838 TTTTCCGTCA
Statistics
Matches: 86, Mismatches: 13, Indels: 6
0.82 0.12 0.06
Matches are distributed among these distances:
51 30 0.35
52 21 0.24
53 31 0.36
54 4 0.05
ACGTcount: A:0.31, C:0.30, G:0.16, T:0.24
Consensus pattern (52 bp):
ACCGATGCCATAGCCCAACTATGGTCTTATACGGGAACACATATCACATCAC
Found at i:72546969 original size:6 final size:6
Alignment explanation
Indices: 72546939--72547095 Score: 65
Period size: 6 Copynumber: 25.3 Consensus size: 6
72546929 AAGAAACATT
* * * *
72546939 ATCAGA A-CTAGA ATCAAA ATGAGA ATCAGA ATCAG- GTGACAGA ATTAGA
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA AT--CAGA ATCAGA
* * * *
72546988 ATCAGA ATCAGA ATTAG- GTCACAGA ATCAGA ATAAGT ATCAGGTA A-CAGA
1 ATCAGA ATCAGA ATCAGA AT--CAGA ATCAGA ATCAGA ATCA-G-A ATCAGA
* * * *
72547038 ATCAGA ATTAG- GTGACAAA ATCAGA ATCAGT ATCAGGCA A-CAGA ATCAGA
1 ATCAGA ATCAGA AT--CAGA ATCAGA ATCAGA ATCA-G-A ATCAGA ATCAGA
72547088 ATCAGA AT
1 ATCAGA AT
72547096 GTGAATGCAA
Statistics
Matches: 110, Mismatches: 24, Indels: 34
0.65 0.14 0.20
Matches are distributed among these distances:
5 8 0.07
6 84 0.76
7 13 0.12
8 5 0.05
ACGTcount: A:0.47, C:0.14, G:0.20, T:0.19
Consensus pattern (6 bp):
ATCAGA
Found at i:72547013 original size:25 final size:25
Alignment explanation
Indices: 72546985--72547095 Score: 101
Period size: 25 Copynumber: 4.7 Consensus size: 25
72546975 TGACAGAATT
*
72546985 AGAATCAGAATCAGAATTAGGTCAC
1 AGAATCAGAATCAGAATCAGGTCAC
* *
72547010 AGAATCAGAATAAGTATCAGGT---
1 AGAATCAGAATCAGAATCAGGTCAC
* *
72547032 --AA-CAGAATCAGAATTAGGTGAC
1 AGAATCAGAATCAGAATCAGGTCAC
* *
72547054 AAAATCAGAATCAGTATCAGG-CAAC
1 AGAATCAGAATCAGAATCAGGTC-AC
72547079 AGAATCAGAATCAGAAT
1 AGAATCAGAATCAGAAT
72547096 GTGAATGCAA
Statistics
Matches: 68, Mismatches: 11, Indels: 14
0.73 0.12 0.15
Matches are distributed among these distances:
19 14 0.21
20 2 0.03
24 2 0.03
25 50 0.74
ACGTcount: A:0.47, C:0.14, G:0.20, T:0.19
Consensus pattern (25 bp):
AGAATCAGAATCAGAATCAGGTCAC
Found at i:72547014 original size:19 final size:19
Alignment explanation
Indices: 72546978--72547064 Score: 70
Period size: 19 Copynumber: 4.3 Consensus size: 19
72546968 AATCAGGTGA
72546978 CAGAATTA-G-AATCAGAAT
1 CAGAATTAGGTAA-CAGAAT
*
72546996 CAGAATTAGGTCACAGAAT
1 CAGAATTAGGTAACAGAAT
72547015 CAGAATAAGTATCAGGTAACAGAAT
1 CAG---AA-T-T-AGGTAACAGAAT
* *
72547040 CAGAATTAGGTGACAAAAT
1 CAGAATTAGGTAACAGAAT
72547059 CAGAAT
1 CAGAAT
72547065 CAGTATCAGG
Statistics
Matches: 57, Mismatches: 4, Indels: 15
0.75 0.05 0.20
Matches are distributed among these distances:
18 8 0.14
19 26 0.46
20 2 0.04
21 1 0.02
22 4 0.07
23 1 0.02
24 1 0.02
25 14 0.25
ACGTcount: A:0.47, C:0.13, G:0.20, T:0.21
Consensus pattern (19 bp):
CAGAATTAGGTAACAGAAT
Found at i:72547020 original size:31 final size:31
Alignment explanation
Indices: 72546948--72547029 Score: 101
Period size: 31 Copynumber: 2.6 Consensus size: 31
72546938 TATCAGAACT
* * *
72546948 AGAATCAAAATGAGAATCAGAATCAGGTGAC
1 AGAATCAGAATAAGAATCAGAATCAGGTCAC
* * *
72546979 AGAATTAGAATCAGAATCAGAATTAGGTCAC
1 AGAATCAGAATAAGAATCAGAATCAGGTCAC
*
72547010 AGAATCAGAATAAGTATCAG
1 AGAATCAGAATAAGAATCAG
72547030 GTAACAGAAT
Statistics
Matches: 43, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
31 43 1.00
ACGTcount: A:0.48, C:0.12, G:0.21, T:0.20
Consensus pattern (31 bp):
AGAATCAGAATAAGAATCAGAATCAGGTCAC
Found at i:72547038 original size:44 final size:44
Alignment explanation
Indices: 72546990--72547089 Score: 164
Period size: 44 Copynumber: 2.3 Consensus size: 44
72546980 GAATTAGAAT
* *
72546990 CAGAATCAGAATTAGGTCACAGAATCAGAATAAGTATCAGGTAA
1 CAGAATCAGAATTAGGTCACAAAATCAGAATAAGTATCAGGCAA
* *
72547034 CAGAATCAGAATTAGGTGACAAAATCAGAATCAGTATCAGGCAA
1 CAGAATCAGAATTAGGTCACAAAATCAGAATAAGTATCAGGCAA
72547078 CAGAATCAGAAT
1 CAGAATCAGAAT
72547090 CAGAATGTGA
Statistics
Matches: 52, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
44 52 1.00
ACGTcount: A:0.46, C:0.15, G:0.20, T:0.19
Consensus pattern (44 bp):
CAGAATCAGAATTAGGTCACAAAATCAGAATAAGTATCAGGCAA
Found at i:72547253 original size:27 final size:26
Alignment explanation
Indices: 72547213--72547320 Score: 81
Period size: 27 Copynumber: 4.0 Consensus size: 26
72547203 AACATGGCTG
* * * *
72547213 CCAGAACAAATATTGTGACAGAGTCA
1 CCAGAATAGATATTGTGACAAAGCCA
*
72547239 CCAGATATAGATATTGTGGCAAAGCCA
1 CCAGA-ATAGATATTGTGACAAAGCCA
* * *
72547266 CCGGAATAGATATTTGTGGCATAGCCA
1 CCAGAATAGATA-TTGTGACAAAGCCA
* * * *
72547293 CCAAAAACAGATAATGTGGCAAAGCCA
1 CC-AGAATAGATATTGTGACAAAGCCA
72547320 C
1 C
72547321 TTAACAGAAT
Statistics
Matches: 67, Mismatches: 12, Indels: 5
0.80 0.14 0.06
Matches are distributed among these distances:
26 12 0.18
27 48 0.72
28 7 0.10
ACGTcount: A:0.39, C:0.20, G:0.21, T:0.19
Consensus pattern (26 bp):
CCAGAATAGATATTGTGACAAAGCCA
Found at i:72547986 original size:54 final size:54
Alignment explanation
Indices: 72547936--72548115 Score: 281
Period size: 54 Copynumber: 3.3 Consensus size: 54
72547926 TTTACCCCAC
* *
72547936 AAGGGTATCTCGATAATTCTACCCTACAGGGGTATTTCGATATTTCTACCCTAT
1 AAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCGATATTTCTACCCTAT
72547990 AAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCGATATTTCTACCCTAT
1 AAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCGATATTTCTACCCTAT
* * *
72548044 AAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTC-AGTAATTCTACCTTAC
1 AAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCGA-TATTTCTACCCTAT
* *
72548098 AGGGGTATTTTGGTAATT
1 AAGGGTATTTCGGTAATT
72548116 TTGTAAATCA
Statistics
Matches: 118, Mismatches: 7, Indels: 2
0.93 0.06 0.02
Matches are distributed among these distances:
53 1 0.01
54 117 0.99
ACGTcount: A:0.25, C:0.19, G:0.19, T:0.37
Consensus pattern (54 bp):
AAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCGATATTTCTACCCTAT
Found at i:72548113 original size:27 final size:27
Alignment explanation
Indices: 72547920--72548115 Score: 248
Period size: 27 Copynumber: 7.3 Consensus size: 27
72547910 GAGTCAAAAT
* * * *
72547920 GGTAATTTTACCCCACAAGGGTATCTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
72547947 GATAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * * *
72547974 GATATTTCTACCCTATAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
72548001 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * * *
72548028 GATATTTCTACCCTATAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
72548055 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * *
72548082 AGTAATTCTACCTTACAGGGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTC
72548109 GGTAATT
1 GGTAATT
72548116 TTGTAAATCA
Statistics
Matches: 145, Mismatches: 24, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 145 1.00
ACGTcount: A:0.25, C:0.20, G:0.19, T:0.36
Consensus pattern (27 bp):
GGTAATTCTACCCTACAGGGGTATTTC
Found at i:72548142 original size:81 final size:79
Alignment explanation
Indices: 72547973--72548144 Score: 175
Period size: 81 Copynumber: 2.1 Consensus size: 79
72547963 AGGGGTATTT
* * *
72547973 CGATATTTCTACCCTATAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCGATATTTCTA
1 CGATAATTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCGATATTTCTA
* ***
72548038 CCCTATAAGGGTATTT
66 --CAATAAGGGTAAAA
* * * * * *
72548054 CGGTAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCTTACAGGGGTATTTTGGTAATTTTG
1 CGATAATTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCGAT-A-TTTC
72548119 TA-AATCAAGGGTAAAA
64 TACAAT-AAGGGTAAAA
72548135 CGATAATTCT
1 CGATAATTCT
72548145 GTAAATTGAG
Statistics
Matches: 74, Mismatches: 14, Indels: 6
0.79 0.15 0.06
Matches are distributed among these distances:
80 2 0.03
81 66 0.89
82 1 0.01
83 5 0.07
ACGTcount: A:0.27, C:0.17, G:0.19, T:0.37
Consensus pattern (79 bp):
CGATAATTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCGATATTTCTA
CAATAAGGGTAAAA
Found at i:72548186 original size:27 final size:26
Alignment explanation
Indices: 72548156--72548358 Score: 172
Period size: 27 Copynumber: 7.5 Consensus size: 26
72548146 TAAATTGAGC
*
72548156 GTATTTTGGTAATTTTACAAGTCAAGG
1 GTATTTTGGTAATTTTACAA-ACAAGG
** ** *
72548183 GTATTTCAGTAATTTTACAGGTCGAGG
1 GTATTTTGGTAATTTTACA-AACAAGG
** * *
72548210 GTATTTCAGTAATTTCACAAATCAGGG
1 GTATTTTGGTAATTTTACAAA-CAAGG
*
72548237 GTATTTTGGTAATTTTACAAACTAGGG
1 GTATTTTGGTAATTTTACAAAC-AAGG
**
72548264 GTACATTGGTAATTTTACAAACCAAGG
1 GTATTTTGGTAATTTTACAAA-CAAGG
* **
72548291 ATATTTTGGTAATTTTACAAACTTGGG
1 GTATTTTGGTAATTTTACAAAC-AAGG
* *
72548318 GTATTTTCGTAATTTTATAAACTAAGG
1 GTATTTTGGTAATTTTACAAAC-AAGG
*
72548345 GTATTTTAGTAATT
1 GTATTTTGGTAATT
72548359 CTACCCTACA
Statistics
Matches: 145, Mismatches: 26, Indels: 10
0.80 0.14 0.06
Matches are distributed among these distances:
26 2 0.01
27 142 0.98
28 1 0.01
ACGTcount: A:0.31, C:0.09, G:0.20, T:0.40
Consensus pattern (26 bp):
GTATTTTGGTAATTTTACAAACAAGG
Found at i:72548214 original size:54 final size:53
Alignment explanation
Indices: 72548100--72548358 Score: 186
Period size: 54 Copynumber: 4.8 Consensus size: 53
72548090 TACCTTACAG
** ** *
72548100 GGGTATTTTGGTAATTTTGTAAATCAAGGGTA--AAACGATAATTCTGTA-AATTGA
1 GGGTATTTTGGTAATTTTACAAATCAAGGGTATTTTA-G-TAATT-T-TACAATCGA
* * * *
72548154 GCGTATTTTGGTAATTTTACAAGTCAAGGGTATTTCAGTAATTTTACAGGTCGA
1 GGGTATTTTGGTAATTTTACAAATCAAGGGTATTTTAGTAATTTTACA-ATCGA
** * * * * *
72548208 GGGTATTTCAGTAATTTCACAAATCAGGGGTATTTTGGTAATTTTACAAACTA
1 GGGTATTTTGGTAATTTTACAAATCAAGGGTATTTTAGTAATTTTACAATCGA
** * * * *
72548261 GGGGTACATTGGTAATTTTACAAACCAAGGATATTTTGGTAATTTTACAAACTTG-
1 -GGGTATTTTGGTAATTTTACAAATCAAGGGTATTTTAGTAATTTTAC-AA-TCGA
* *
72548316 GGGTATTTTCGTAATTTTATAAA-CTAAGGGTATTTTAGTAATT
1 GGGTATTTTGGTAATTTTACAAATC-AAGGGTATTTTAGTAATT
72548359 CTACCCTACA
Statistics
Matches: 161, Mismatches: 36, Indels: 16
0.76 0.17 0.08
Matches are distributed among these distances:
52 2 0.01
53 5 0.03
54 150 0.93
55 3 0.02
56 1 0.01
ACGTcount: A:0.32, C:0.09, G:0.20, T:0.39
Consensus pattern (53 bp):
GGGTATTTTGGTAATTTTACAAATCAAGGGTATTTTAGTAATTTTACAATCGA
Found at i:72548266 original size:81 final size:80
Alignment explanation
Indices: 72548156--72548358 Score: 212
Period size: 81 Copynumber: 2.5 Consensus size: 80
72548146 TAAATTGAGC
* *** * *
72548156 GTATTTTGGTAATTTTAC-AAGTCAAGGGTATTTCAGTAATTTTACAGGTCGAGGGTATTTCAGT
1 GTATTTTGGTAATTTTACAAACT-AAGGGTATTT-AGTAATTTTACAAACCAAGGATATTTCAGT
72548220 AATTTCACAAA-TCAGGG
64 AATTTCACAAACT-AGGG
* * * **
72548237 GTATTTTGGTAATTTTACAAACTAGGGGTACATTGGTAATTTTACAAACCAAGGATATTTTGGTA
1 GTATTTTGGTAATTTTACAAACTAAGGGTA-TTTAGTAATTTTACAAACCAAGGATATTTCAGTA
* *
72548302 ATTTTACAAACTTGGG
65 ATTTCACAAACTAGGG
* *
72548318 GTATTTTCGTAATTTTATAAACTAAGGGTATTTTAGTAATT
1 GTATTTTGGTAATTTTACAAACTAAGGGTA-TTTAGTAATT
72548359 CTACCCTACA
Statistics
Matches: 100, Mismatches: 19, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
81 94 0.94
82 6 0.06
ACGTcount: A:0.31, C:0.09, G:0.20, T:0.40
Consensus pattern (80 bp):
GTATTTTGGTAATTTTACAAACTAAGGGTATTTAGTAATTTTACAAACCAAGGATATTTCAGTAA
TTTCACAAACTAGGG
Found at i:72550278 original size:6 final size:6
Alignment explanation
Indices: 72550255--72550388 Score: 78
Period size: 6 Copynumber: 21.8 Consensus size: 6
72550245 TACCAAAAAT
* * * *
72550255 AGAATC AAAATG AGAATC AGAATC AGAATC AG-GTGAC AGAATT AGAATC
1 AGAATC AGAATC AGAATC AGAATC AGAATC AGAAT--C AGAATC AGAATC
* * * *
72550304 AGTATC AAGTAA-C AGAATC AGAATC AGAAT- AGAATT AG-GTGAC TGAATC
1 AGAATC -AG-AATC AGAATC AGAATC AGAATC AGAATC AGAAT--C AGAATC
* * *
72550353 AGAATC AGTATC AGATAAC AGAATC AAAATC AGAAT
1 AGAATC AGAATC AGA-ATC AGAATC AGAATC AGAAT
72550389 GTGAATGCAA
Statistics
Matches: 96, Mismatches: 21, Indels: 22
0.69 0.15 0.16
Matches are distributed among these distances:
5 9 0.09
6 72 0.75
7 12 0.12
8 3 0.03
ACGTcount: A:0.49, C:0.13, G:0.19, T:0.20
Consensus pattern (6 bp):
AGAATC
Found at i:72550296 original size:19 final size:20
Alignment explanation
Indices: 72550270--72550378 Score: 76
Period size: 19 Copynumber: 5.8 Consensus size: 20
72550260 CAAAATGAGA
72550270 ATCAGAATCAGAATCAGGTG
1 ATCAGAATCAGAATCAGGTG
*
72550290 A-CAGAATTAGAATCA-GT-
1 ATCAGAATCAGAATCAGGTG
*
72550307 ATCAAGTAA-CAGAATCA-G-A
1 ATC-AG-AATCAGAATCAGGTG
*
72550326 ATCAGAAT-AGAATTAGGTG
1 ATCAGAATCAGAATCAGGTG
*
72550345 A-CTGAATCAGAATCA-GT-
1 ATCAGAATCAGAATCAGGTG
*
72550362 ATCAGATAACAGAATCA
1 ATCAGA-ATCAGAATCA
72550379 AAATCAGAAT
Statistics
Matches: 71, Mismatches: 8, Indels: 21
0.71 0.08 0.21
Matches are distributed among these distances:
17 10 0.14
18 16 0.23
19 42 0.59
20 3 0.04
ACGTcount: A:0.46, C:0.14, G:0.19, T:0.21
Consensus pattern (20 bp):
ATCAGAATCAGAATCAGGTG
Found at i:72550301 original size:25 final size:25
Alignment explanation
Indices: 72550267--72550388 Score: 102
Period size: 25 Copynumber: 4.7 Consensus size: 25
72550257 AATCAAAATG
* *
72550267 AGAATCAGAATCAGAATCAGGTGAC
1 AGAATCAGAATCAGAATCAAGTAAC
* *
72550292 AGAATTAGAATCAGTATCAAGTAAC
1 AGAATCAGAATCAGAATCAAGTAAC
* *
72550317 AGAATCAGAATCAGAATAGAATTAGGTGAC
1 AGAATCAGAATCAGAAT--CA--A-GTAAC
* *
72550347 TGAATCAGAATCAGTATC-AGATAAC
1 AGAATCAGAATCAGAATCAAG-TAAC
*
72550372 AGAATCAAAATCAGAAT
1 AGAATCAGAATCAGAAT
72550389 GTGAATGCAA
Statistics
Matches: 76, Mismatches: 15, Indels: 12
0.74 0.15 0.12
Matches are distributed among these distances:
24 1 0.01
25 54 0.71
27 1 0.01
29 1 0.01
30 19 0.25
ACGTcount: A:0.48, C:0.13, G:0.19, T:0.20
Consensus pattern (25 bp):
AGAATCAGAATCAGAATCAAGTAAC
Found at i:72550357 original size:55 final size:56
Alignment explanation
Indices: 72550267--72550388 Score: 185
Period size: 55 Copynumber: 2.2 Consensus size: 56
72550257 AATCAAAATG
*
72550267 AGAATCAGAATCAGAATCAGGTGACAGAATTAGAATCAGTATCA-AGTAACAGAATC
1 AGAATCAGAATCAGAATCAGGTGACAGAATCAGAATCAGTATCAGA-TAACAGAATC
* *
72550323 AGAATCAGAAT-AGAATTAGGTGACTGAATCAGAATCAGTATCAGATAACAGAATC
1 AGAATCAGAATCAGAATCAGGTGACAGAATCAGAATCAGTATCAGATAACAGAATC
*
72550378 AAAATCAGAAT
1 AGAATCAGAAT
72550389 GTGAATGCAA
Statistics
Matches: 61, Mismatches: 4, Indels: 3
0.90 0.06 0.04
Matches are distributed among these distances:
55 49 0.80
56 12 0.20
ACGTcount: A:0.48, C:0.13, G:0.19, T:0.20
Consensus pattern (56 bp):
AGAATCAGAATCAGAATCAGGTGACAGAATCAGAATCAGTATCAGATAACAGAATC
Found at i:72550575 original size:27 final size:26
Alignment explanation
Indices: 72550508--72550606 Score: 90
Period size: 27 Copynumber: 3.7 Consensus size: 26
72550498 CATGGCTGCT
* **
72550508 AGAACAGATATTGTGACAGAGTCACC
1 AGAACAGATATTGTGGCAGAACCACC
*
72550534 AGATACAGATATTGTGGCAGAACCGCC
1 AGA-ACAGATATTGTGGCAGAACCACC
* *
72550561 AGAACAGATATTTGTGGCATAGCCACC
1 AGAACAGATA-TTGTGGCAGAACCACC
* * *
72550588 GGAAATAGATAATGTGGCA
1 AG-AACAGATATTGTGGCA
72550607 AAGCCACTTA
Statistics
Matches: 60, Mismatches: 10, Indels: 5
0.80 0.13 0.07
Matches are distributed among these distances:
26 10 0.17
27 43 0.72
28 7 0.12
ACGTcount: A:0.36, C:0.18, G:0.25, T:0.20
Consensus pattern (26 bp):
AGAACAGATATTGTGGCAGAACCACC
Found at i:72550799 original size:22 final size:22
Alignment explanation
Indices: 72550771--72550835 Score: 87
Period size: 22 Copynumber: 3.0 Consensus size: 22
72550761 GCAAATACGT
72550771 TTGGCACACAGCCATAATCAGG
1 TTGGCACACAGCCATAATCAGG
*
72550793 TTGGCACACAGCCAT-ATGTAGG
1 TTGGCACACAGCCATAAT-CAGG
* *
72550815 TTGGCGCAAAGCCATAATCAG
1 TTGGCACACAGCCATAATCAG
72550836 AATAATTGGC
Statistics
Matches: 37, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
21 2 0.05
22 33 0.89
23 2 0.05
ACGTcount: A:0.31, C:0.25, G:0.25, T:0.20
Consensus pattern (22 bp):
TTGGCACACAGCCATAATCAGG
Found at i:72551241 original size:27 final size:27
Alignment explanation
Indices: 72551211--72551300 Score: 110
Period size: 27 Copynumber: 3.3 Consensus size: 27
72551201 GGGGTAAAAT
* *
72551211 GGTAATTTTACCCCACAAGGGTATCTC
1 GGTAATTTTACCCTACAAGGGTATTTC
* * * *
72551238 GGTAATTCTACTCTACAGGGGTATTTA
1 GGTAATTTTACCCTACAAGGGTATTTC
72551265 GGT-ATTTCTACCCTACAAGGGTATTTC
1 GGTAATTT-TACCCTACAAGGGTATTTC
72551292 GGTAATTTT
1 GGTAATTTT
72551301 GTAAATCGAG
Statistics
Matches: 51, Mismatches: 10, Indels: 4
0.78 0.15 0.06
Matches are distributed among these distances:
26 3 0.06
27 44 0.86
28 4 0.08
ACGTcount: A:0.24, C:0.19, G:0.20, T:0.37
Consensus pattern (27 bp):
GGTAATTTTACCCTACAAGGGTATTTC
Found at i:72551312 original size:27 final size:27
Alignment explanation
Indices: 72551282--72551514 Score: 193
Period size: 27 Copynumber: 8.6 Consensus size: 27
72551272 CTACCCTACA
* **
72551282 AGGGTATTTCGGTAATTTTGTAAATCG
1 AGGGTATTTTGGTAATTTTACAAATCG
**** * * *
72551309 AGGGTAAAACGGTAATTCTATAAATTG
1 AGGGTATTTTGGTAATTTTACAAATCG
* * **
72551336 AGGGTACTTTGGTAATTTTATAGGTCG
1 AGGGTATTTTGGTAATTTTACAAATCG
* *
72551363 AGGGTACTTTGGTAATTTTACAAGTCG
1 AGGGTATTTTGGTAATTTTACAAATCG
*
72551390 AGGGTATTTTGGTAATTTTACAAAT-T
1 AGGGTATTTTGGTAATTTTACAAATCG
*
72551416 AGGGGTATTTTGGTAATTTTACAAA-CT
1 A-GGGTATTTTGGTAATTTTACAAATCG
*
72551443 AGGGGTATTTTGGTAATTTTACAAA-CC
1 A-GGGTATTTTGGTAATTTTACAAATCG
* * * *
72551470 AGGGGTATTTTGGCAATTTTATAAACCA
1 A-GGGTATTTTGGTAATTTTACAAATCG
* *
72551498 AAGGTATTTTAGTAATT
1 AGGGTATTTTGGTAATT
72551515 CTACCCTACA
Statistics
Matches: 177, Mismatches: 26, Indels: 6
0.85 0.12 0.03
Matches are distributed among these distances:
26 1 0.01
27 174 0.98
28 2 0.01
ACGTcount: A:0.30, C:0.08, G:0.23, T:0.39
Consensus pattern (27 bp):
AGGGTATTTTGGTAATTTTACAAATCG
Found at i:72551534 original size:81 final size:81
Alignment explanation
Indices: 72551370--72551540 Score: 175
Period size: 81 Copynumber: 2.1 Consensus size: 81
72551360 TCGAGGGTAC
** * ** ** * *
72551370 TTTGGTAATTTTACAAGTCGAGGGTATTTTGGTAATTTTACAAATTAGGGGTATTTTGGTAATTT
1 TTTGGTAATTTTACAAACCGAGGGTATTTTGGCAATTTTACAAACCAAAGGTATTTTAGTAATTC
* *
72551435 TACAAACTAGGGGTAT
66 TACAAACTAAGGGCAT
*
72551451 TTTGGTAATTTTACAAACC-AGGGGTATTTTGGCAATTTTATAAACCAAAGGTATTTTAGTAATT
1 TTTGGTAATTTTACAAACCGA-GGGTATTTTGGCAATTTTACAAACCAAAGGTATTTTAGTAATT
**
72551515 CTACCCTAC-AAGGGCAT
65 CTA-CAAACTAAGGGCAT
*
72551532 TTTAGTAAT
1 TTTGGTAAT
72551541 ACTAGCCTAC
Statistics
Matches: 73, Mismatches: 15, Indels: 4
0.79 0.16 0.04
Matches are distributed among these distances:
80 1 0.01
81 69 0.95
82 3 0.04
ACGTcount: A:0.30, C:0.10, G:0.20, T:0.40
Consensus pattern (81 bp):
TTTGGTAATTTTACAAACCGAGGGTATTTTGGCAATTTTACAAACCAAAGGTATTTTAGTAATTC
TACAAACTAAGGGCAT
Found at i:72553457 original size:6 final size:6
Alignment explanation
Indices: 72553401--72553597 Score: 109
Period size: 6 Copynumber: 32.0 Consensus size: 6
72553391 TAGCCCATTA
* * * * *
72553401 CAGAAT AAGAAA CAGTAT CAGAAAT -AGAAT CAAAAT CAGAAT CAAAAT
1 CAGAAT CAGAAT CAGAAT CAG-AAT CAGAAT CAGAAT CAGAAT CAGAAT
* * * *
72553449 CAGAAT CAG-GT GACAGAAT CAGAAT CAGAAT CAAAAT TATGTGA- CAGAAT
1 CAGAAT CAGAAT --CAGAAT CAGAAT CAGAAT CAGAAT CA-G-AAT CAGAAT
* *
72553499 CAGAAT CAGAAT CAGGTAA- CAAAAT CAGAAT CAGAAT TAGAAT CAGAAT
1 CAGAAT CAGAAT CA-G-AAT CAGAAT CAGAAT CAGAAT CAGAAT CAGAAT
* * * * *
72553548 TAG-GT GACAGAAT CAGAAT CAGTAT TAGGTAA- CAGAAT CAGAAT TAGAAT
1 CAGAAT --CAGAAT CAGAAT CAGAAT CA-G-AAT CAGAAT CAGAAT CAGAAT
72553598 GTGAATGCAA
Statistics
Matches: 143, Mismatches: 31, Indels: 34
0.69 0.15 0.16
Matches are distributed among these distances:
5 10 0.07
6 114 0.80
7 13 0.09
8 6 0.04
ACGTcount: A:0.50, C:0.13, G:0.18, T:0.20
Consensus pattern (6 bp):
CAGAAT
Found at i:72553468 original size:25 final size:25
Alignment explanation
Indices: 72553437--72553535 Score: 108
Period size: 25 Copynumber: 3.7 Consensus size: 25
72553427 GAATCAAAAT
*
72553437 CAGAATCAAAATCAGAATCAGGTGA
1 CAGAATCAGAATCAGAATCAGGTGA
*
72553462 CAGAATCAGAATCAGAATCAAAATTATGTGA
1 CAGAATCAGAATCAGAATC------AGGTGA
*
72553493 CAGAATCAGAATCAGAATCAGGTAA
1 CAGAATCAGAATCAGAATCAGGTGA
*
72553518 CAAAATCAGAATCAGAAT
1 CAGAATCAGAATCAGAAT
72553536 TAGAATCAGA
Statistics
Matches: 63, Mismatches: 5, Indels: 12
0.79 0.06 0.15
Matches are distributed among these distances:
25 39 0.62
31 24 0.38
ACGTcount: A:0.49, C:0.15, G:0.17, T:0.18
Consensus pattern (25 bp):
CAGAATCAGAATCAGAATCAGGTGA
Found at i:72553471 original size:31 final size:31
Alignment explanation
Indices: 72553434--72553569 Score: 152
Period size: 31 Copynumber: 4.4 Consensus size: 31
72553424 ATAGAATCAA
*
72553434 AATCAGAATCAAAATCAGAATCAGGTGACAG
1 AATCAGAATCAGAATCAGAATCAGGTGACAG
* * *
72553465 AATCAGAATCAGAATCAAAATTATGTGACAG
1 AATCAGAATCAGAATCAGAATCAGGTGACAG
**
72553496 AATCAGAATCAGAATCAGGTAA-CA--AAATCAG
1 AATCAGAATCAGAATCA-G-AATCAGGTGA-CAG
* *
72553527 AATCAGAATTAGAATCAGAATTAGGTGACAG
1 AATCAGAATCAGAATCAGAATCAGGTGACAG
72553558 AATCAGAATCAG
1 AATCAGAATCAG
72553570 TATTAGGTAA
Statistics
Matches: 86, Mismatches: 13, Indels: 12
0.77 0.12 0.11
Matches are distributed among these distances:
29 2 0.02
30 3 0.03
31 77 0.90
32 2 0.02
33 2 0.02
ACGTcount: A:0.49, C:0.14, G:0.18, T:0.19
Consensus pattern (31 bp):
AATCAGAATCAGAATCAGAATCAGGTGACAG
Found at i:72553558 original size:25 final size:25
Alignment explanation
Indices: 72553530--72553597 Score: 100
Period size: 25 Copynumber: 2.7 Consensus size: 25
72553520 AAATCAGAAT
* *
72553530 CAGAATTAGAATCAGAATTAGGTGA
1 CAGAATCAGAATCAGAATTAGGTAA
*
72553555 CAGAATCAGAATCAGTATTAGGTAA
1 CAGAATCAGAATCAGAATTAGGTAA
*
72553580 CAGAATCAGAATTAGAAT
1 CAGAATCAGAATCAGAAT
72553598 GTGAATGCAA
Statistics
Matches: 38, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 38 1.00
ACGTcount: A:0.46, C:0.10, G:0.21, T:0.24
Consensus pattern (25 bp):
CAGAATCAGAATCAGAATTAGGTAA
Found at i:72553575 original size:37 final size:37
Alignment explanation
Indices: 72553417--72553588 Score: 124
Period size: 37 Copynumber: 4.6 Consensus size: 37
72553407 AAGAAACAGT
* *
72553417 ATCAGAAATAGAATCAAAATCA-G-AATCAAAATCAGA
1 ATCAGAATTAGAATCAGAATCAGGTAA-CAAAATCAGA
* * * *
72553453 ATCAG-GTGACAGAATCAGAATCA-G-AATCAAAATTATGTG
1 ATCAGAAT--TAGAATCAGAATCAGGTAA-CAAAATCA-G-A
*
72553492 A-CAGAATCAGAATCAGAATCAGGTAACAAAATCAGA
1 ATCAGAATTAGAATCAGAATCAGGTAACAAAATCAGA
* * *
72553528 ATCAGAATTAGAATCAGAATTAGGTGACAGAATCAGA
1 ATCAGAATTAGAATCAGAATCAGGTAACAAAATCAGA
*
72553565 ATCAGTATTAGGTAA-CAGAATCAG
1 ATCAGAATTA-G-AATCAGAATCAG
72553589 AATTAGAATG
Statistics
Matches: 111, Mismatches: 15, Indels: 18
0.77 0.10 0.12
Matches are distributed among these distances:
36 6 0.05
37 78 0.70
38 21 0.19
39 6 0.05
ACGTcount: A:0.49, C:0.13, G:0.18, T:0.20
Consensus pattern (37 bp):
ATCAGAATTAGAATCAGAATCAGGTAACAAAATCAGA
Found at i:72553578 original size:62 final size:62
Alignment explanation
Indices: 72553462--72553597 Score: 209
Period size: 62 Copynumber: 2.2 Consensus size: 62
72553452 AATCAGGTGA
*
72553462 CAGAATCAGAATCAGAATCAAAATTATGTGACAGAATCAGAATCAGAATCAGGTAACAAAAT
1 CAGAATCAGAATCAGAATCAAAATTAGGTGACAGAATCAGAATCAGAATCAGGTAACAAAAT
* * * * *
72553524 CAGAATCAGAATTAGAATCAGAATTAGGTGACAGAATCAGAATCAGTATTAGGTAACAGAAT
1 CAGAATCAGAATCAGAATCAAAATTAGGTGACAGAATCAGAATCAGAATCAGGTAACAAAAT
*
72553586 CAGAATTAGAAT
1 CAGAATCAGAAT
72553598 GTGAATGCAA
Statistics
Matches: 67, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
62 67 1.00
ACGTcount: A:0.48, C:0.12, G:0.18, T:0.21
Consensus pattern (62 bp):
CAGAATCAGAATCAGAATCAAAATTAGGTGACAGAATCAGAATCAGAATCAGGTAACAAAAT
Found at i:72553590 original size:31 final size:31
Alignment explanation
Indices: 72553400--72553597 Score: 144
Period size: 31 Copynumber: 6.6 Consensus size: 31
72553390 TTAGCCCATT
* * * *
72553400 ACAGAATAAGAAACAGTATCAGAAATA-G-A
1 ACAGAATCAGAATCAGAATCAGAATTAGGTA
* * * *
72553429 ATCAAAATCAGAATCAAAATCAGAATCAGGTG
1 A-CAGAATCAGAATCAGAATCAGAATTAGGTA
* * *
72553461 ACAGAATCAGAATCAGAATCAAAATTATGTG
1 ACAGAATCAGAATCAGAATCAGAATTAGGTA
* * ***
72553492 ACAGAATCAGAATCAGAATCAG-GTAACAAA
1 ACAGAATCAGAATCAGAATCAGAATTAGGTA
*
72553522 ATCAGAATCAGAATTAGAATCAGAATTAGGT-
1 A-CAGAATCAGAATCAGAATCAGAATTAGGTA
*
72553553 ---G-A-CAGAATCAGAATCAGTATTAGGTA
1 ACAGAATCAGAATCAGAATCAGAATTAGGTA
*
72553579 ACAGAATCAGAATTAGAAT
1 ACAGAATCAGAATCAGAAT
72553598 GTGAATGCAA
Statistics
Matches: 129, Mismatches: 29, Indels: 20
0.72 0.16 0.11
Matches are distributed among these distances:
25 21 0.16
26 1 0.01
27 1 0.01
29 2 0.02
30 23 0.18
31 78 0.60
32 3 0.02
ACGTcount: A:0.50, C:0.13, G:0.18, T:0.20
Consensus pattern (31 bp):
ACAGAATCAGAATCAGAATCAGAATTAGGTA
Found at i:72553752 original size:27 final size:26
Alignment explanation
Indices: 72553715--72553812 Score: 99
Period size: 27 Copynumber: 3.7 Consensus size: 26
72553705 AGCATGGCTG
**
72553715 CCAGAACAGATATTGTGACAGAGTTA
1 CCAGAACAGATATTGTGACAGAGACA
*
72553741 CCAGATACAGATATTGTGACAGGGACA
1 CCAGA-ACAGATATTGTGACAGAGACA
* *
72553768 CCAGAACAGATATT-TGTAGCATAGCCA
1 CCAGAACAGATATTGTG-A-CAGAGACA
*
72553795 CCAGAAACAGATAATGTG
1 CCAG-AACAGATATTGTG
72553813 GCAAAGCCAC
Statistics
Matches: 60, Mismatches: 7, Indels: 7
0.81 0.09 0.09
Matches are distributed among these distances:
25 2 0.03
26 15 0.25
27 32 0.53
28 9 0.15
29 2 0.03
ACGTcount: A:0.39, C:0.18, G:0.22, T:0.20
Consensus pattern (26 bp):
CCAGAACAGATATTGTGACAGAGACA
Found at i:72553820 original size:27 final size:27
Alignment explanation
Indices: 72553766--72553822 Score: 71
Period size: 27 Copynumber: 2.1 Consensus size: 27
72553756 GTGACAGGGA
* *
72553766 CACCAGAACAGATATTTGTAGCATAGC
1 CACCAGAACAGATATATGTAGCAAAGC
*
72553793 CACCAGAAACAGATA-ATGTGGCAAAGC
1 CACCAG-AACAGATATATGTAGCAAAGC
72553820 CAC
1 CAC
72553823 TTAACAGAAT
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
27 18 0.69
28 8 0.31
ACGTcount: A:0.40, C:0.25, G:0.19, T:0.16
Consensus pattern (27 bp):
CACCAGAACAGATATATGTAGCAAAGC
Found at i:72554009 original size:22 final size:22
Alignment explanation
Indices: 72553981--72554045 Score: 69
Period size: 22 Copynumber: 3.0 Consensus size: 22
72553971 GCAAATACGT
*
72553981 TTGGCACACAGCCATAATCAGG
1 TTGGCACAAAGCCATAATCAGG
* *
72554003 TTGGCACAGAGCCAT-ATGTAGG
1 TTGGCACAAAGCCATAAT-CAGG
* *
72554025 TTGGCGCAAAGTCATAATCAG
1 TTGGCACAAAGCCATAATCAG
72554046 AATAATTGGC
Statistics
Matches: 35, Mismatches: 6, Indels: 4
0.78 0.13 0.09
Matches are distributed among these distances:
21 2 0.06
22 31 0.89
23 2 0.06
ACGTcount: A:0.31, C:0.22, G:0.26, T:0.22
Consensus pattern (22 bp):
TTGGCACAAAGCCATAATCAGG
Found at i:72554519 original size:27 final size:27
Alignment explanation
Indices: 72554478--72554563 Score: 145
Period size: 27 Copynumber: 3.2 Consensus size: 27
72554468 GGTATTTTGA
*
72554478 TATTTCGGTATTTCTACCCTACAAGGG
1 TATTTCGGTAATTCTACCCTACAAGGG
* *
72554505 TATTTCGATAATTCTACCCTACAGGGG
1 TATTTCGGTAATTCTACCCTACAAGGG
72554532 TATTTCGGTAATTCTACCCTACAAGGG
1 TATTTCGGTAATTCTACCCTACAAGGG
72554559 TATTT
1 TATTT
72554564 TGACAATTTT
Statistics
Matches: 54, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 54 1.00
ACGTcount: A:0.24, C:0.21, G:0.17, T:0.37
Consensus pattern (27 bp):
TATTTCGGTAATTCTACCCTACAAGGG
Found at i:72554740 original size:27 final size:26
Alignment explanation
Indices: 72554608--72554787 Score: 155
Period size: 27 Copynumber: 6.7 Consensus size: 26
72554598 TTTGTAAATT
* * *
72554608 GAGGGTACTTTGGTAATTTTACAAGTC
1 GAGGGTATTTTAGTAATTTTACAA-AC
* **
72554635 GAGGGTATTTCAGTAATTTTACAGGTC
1 GAGGGTATTTTAGTAATTTTACA-AAC
* *
72554662 GAGGGTATTTCAGTAATTTCACAAATC
1 GAGGGTATTTTAGTAATTTTACAAA-C
*
72554689 -AGCGGTATTTTTGTAATTTTACAAAC
1 GAG-GGTATTTTAGTAATTTTACAAAC
* *
72554715 TAGTGGTATTTTGGTAATTTTACAAAC
1 GAG-GGTATTTTAGTAATTTTACAAAC
* * *
72554742 CAGGGGTATTTTTGTAATTTTATAAACC
1 GA-GGGTATTTTAGTAATTTTACAAA-C
*
72554770 AAGGGTATTTTAGTAATT
1 GAGGGTATTTTAGTAATT
72554788 CTACCCTACA
Statistics
Matches: 130, Mismatches: 17, Indels: 12
0.82 0.11 0.08
Matches are distributed among these distances:
26 3 0.02
27 124 0.95
28 3 0.02
ACGTcount: A:0.29, C:0.10, G:0.21, T:0.40
Consensus pattern (26 bp):
GAGGGTATTTTAGTAATTTTACAAAC
Found at i:72554780 original size:54 final size:53
Alignment explanation
Indices: 72554609--72554787 Score: 180
Period size: 54 Copynumber: 3.3 Consensus size: 53
72554599 TTGTAAATTG
* * * ** ** *
72554609 AGGGTACTTTGGTAATTTTACAAGTC-GAGGGTATTTCAGTAATTTTACAGGTCG
1 AGGGTATTTTAGTAATTTTACAAATCAG-GGGTATTTTTGTAATTTTACA-AACA
* * * *
72554663 AGGGTATTTCAGTAATTTCACAAATCAGCGGTATTTTTGTAATTTTACAAACT
1 AGGGTATTTTAGTAATTTTACAAATCAGGGGTATTTTTGTAATTTTACAAACA
* * *
72554716 AGTGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTTGTAATTTTATAAACCA
1 AG-GGTATTTTAGTAATTTTACAAATCAGGGGTATTTTTGTAATTTTACAAA-CA
72554771 AGGGTATTTTAGTAATT
1 AGGGTATTTTAGTAATT
72554788 CTACCCTACA
Statistics
Matches: 103, Mismatches: 19, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
53 3 0.03
54 96 0.93
55 4 0.04
ACGTcount: A:0.30, C:0.10, G:0.20, T:0.40
Consensus pattern (53 bp):
AGGGTATTTTAGTAATTTTACAAATCAGGGGTATTTTTGTAATTTTACAAACA
Found at i:72562309 original size:26 final size:26
Alignment explanation
Indices: 72562280--72562332 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
72562270 TGATAAAAAT
72562280 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
72562306 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
72562332 T
1 T
72562333 ATGGGCATTT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.30, C:0.08, G:0.26, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:72570980 original size:8 final size:8
Alignment explanation
Indices: 72570967--72571002 Score: 54
Period size: 8 Copynumber: 4.5 Consensus size: 8
72570957 CTAGATCGGC
72570967 AAAAGCCG
1 AAAAGCCG
72570975 AAAAGCCG
1 AAAAGCCG
*
72570983 AAATGCCG
1 AAAAGCCG
*
72570991 AAATGCCG
1 AAAAGCCG
72570999 AAAA
1 AAAA
72571003 CTGGTATTTT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
8 26 1.00
ACGTcount: A:0.50, C:0.22, G:0.22, T:0.06
Consensus pattern (8 bp):
AAAAGCCG
Found at i:72578481 original size:34 final size:34
Alignment explanation
Indices: 72578438--72578504 Score: 107
Period size: 34 Copynumber: 2.0 Consensus size: 34
72578428 TGAACAAAAT
72578438 AGTCTGGGCCTAAGCCCATATCAGTAACAGTAGC
1 AGTCTGGGCCTAAGCCCATATCAGTAACAGTAGC
* * *
72578472 AGTCTGGGCCTTAGCCCATTTTAGTAACAGTAG
1 AGTCTGGGCCTAAGCCCATATCAGTAACAGTAG
72578505 TTGTGGCAAT
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
34 30 1.00
ACGTcount: A:0.27, C:0.24, G:0.24, T:0.25
Consensus pattern (34 bp):
AGTCTGGGCCTAAGCCCATATCAGTAACAGTAGC
Found at i:72579001 original size:27 final size:27
Alignment explanation
Indices: 72578953--72579006 Score: 81
Period size: 27 Copynumber: 2.0 Consensus size: 27
72578943 AGGGGCATTT
*
72578953 CAATCATTTTAGCACATAAGGGCAAAA
1 CAATCATTTTACCACATAAGGGCAAAA
* *
72578980 CAATCATTTTACCTCATGAGGGCAAAA
1 CAATCATTTTACCACATAAGGGCAAAA
72579007 TAGTTATTTT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.41, C:0.20, G:0.15, T:0.24
Consensus pattern (27 bp):
CAATCATTTTACCACATAAGGGCAAAA
Found at i:72584611 original size:30 final size:30
Alignment explanation
Indices: 72584575--72584636 Score: 106
Period size: 30 Copynumber: 2.1 Consensus size: 30
72584565 TCGGTTATTA
*
72584575 CTCTTTCCACAACACTCTTCAAACTACTGT
1 CTCTTTCCACAACACTCTCCAAACTACTGT
*
72584605 CTCTTTCCCCAACACTCTCCAAACTACTGT
1 CTCTTTCCACAACACTCTCCAAACTACTGT
72584635 CT
1 CT
72584637 TCCATATTGA
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.24, C:0.40, G:0.03, T:0.32
Consensus pattern (30 bp):
CTCTTTCCACAACACTCTCCAAACTACTGT
Found at i:72593320 original size:43 final size:43
Alignment explanation
Indices: 72593273--72593355 Score: 114
Period size: 43 Copynumber: 1.9 Consensus size: 43
72593263 GTTTCAAGCT
72593273 TTTTTTAAATTAAT-TCTTTTAATTAATAAATATATTATTTTCA
1 TTTTTTAAATTAATAT-TTTTAATTAATAAATATATTATTTTCA
* * * *
72593316 TTTTTTTAATTCATATTTTTAATTAATAATTATTTTATTT
1 TTTTTTAAATTAATATTTTTAATTAATAAATATATTATTT
72593356 ATAAAATAAA
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
43 34 0.97
44 1 0.03
ACGTcount: A:0.34, C:0.04, G:0.00, T:0.63
Consensus pattern (43 bp):
TTTTTTAAATTAATATTTTTAATTAATAAATATATTATTTTCA
Found at i:72594207 original size:64 final size:64
Alignment explanation
Indices: 72594100--72594233 Score: 191
Period size: 64 Copynumber: 2.1 Consensus size: 64
72594090 GTCCCTTCCC
* * * *
72594100 AATCAATTAATGACATGTCAGCTATTTTTACATGCCATTTACACCTCATTTAATTAGA-TTTTT
1 AATCATTTAATGACATGTCAACTATTTTTACATGCCATTTACACATAATTTAATTAGATTTTTT
*
72594163 AATCATTTAATGACATGTCAATTAATTTTTACAT-CTCATTTACACATAATTTAATTAGATTTTT
1 AATCATTTAATGACATGTCAACT-ATTTTTACATGC-CATTTACACATAATTTAATTAGATTTTT
72594227 T
64 T
72594228 AATCAT
1 AATCAT
72594234 AAATCCCTAA
Statistics
Matches: 63, Mismatches: 5, Indels: 4
0.88 0.07 0.06
Matches are distributed among these distances:
63 21 0.33
64 31 0.49
65 11 0.17
ACGTcount: A:0.34, C:0.15, G:0.06, T:0.45
Consensus pattern (64 bp):
AATCATTTAATGACATGTCAACTATTTTTACATGCCATTTACACATAATTTAATTAGATTTTTT
Found at i:72594307 original size:19 final size:19
Alignment explanation
Indices: 72594285--72594338 Score: 63
Period size: 19 Copynumber: 2.8 Consensus size: 19
72594275 AATGTTCTAT
*
72594285 CTTCACGTCTCTGTTGCTA
1 CTTCACGTCTCTGCTGCTA
* *
72594304 CTTCATGTCTCTGCTGCTG
1 CTTCACGTCTCTGCTGCTA
* *
72594323 CTTTACGTCCCTGCTG
1 CTTCACGTCTCTGCTG
72594339 TTATATTTTT
Statistics
Matches: 29, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
19 29 1.00
ACGTcount: A:0.07, C:0.33, G:0.19, T:0.41
Consensus pattern (19 bp):
CTTCACGTCTCTGCTGCTA
Found at i:72598934 original size:62 final size:64
Alignment explanation
Indices: 72598839--72598971 Score: 155
Period size: 64 Copynumber: 2.1 Consensus size: 64
72598829 TTAGGGATTT
* * * * *
72598839 ATGATTAAAAAATCTAATTAACTAATGTGTAAAT-G-AGATAAAAATTAATTGACATGTCATTAA
1 ATGATTAAAAAATCTAATTAAATAAGGTATAAATGGCAG-TAAAAAATAACTGACATGTCATTAA
* *
72598902 ATGATT-AAAAATCTAATTAAATGAGGTATAAATGGCATGTAAAAAATAGCTGACATGTCATTAA
1 ATGATTAAAAAATCTAATTAAATAAGGTATAAATGGCA-GTAAAAAATAACTGACATGTCATTAA
*
72598966 TTGATT
1 ATGATT
72598972 GGGAAGGGAT
Statistics
Matches: 59, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
62 23 0.39
63 7 0.12
64 28 0.47
65 1 0.02
ACGTcount: A:0.47, C:0.07, G:0.14, T:0.33
Consensus pattern (64 bp):
ATGATTAAAAAATCTAATTAAATAAGGTATAAATGGCAGTAAAAAATAACTGACATGTCATTAA
Found at i:72599686 original size:11 final size:11
Alignment explanation
Indices: 72599672--72599712 Score: 64
Period size: 11 Copynumber: 3.7 Consensus size: 11
72599662 TATTTCCTCC
72599672 CTATTTTGCTA
1 CTATTTTGCTA
*
72599683 CTATTTTACTA
1 CTATTTTGCTA
*
72599694 CTATGTTGCTA
1 CTATTTTGCTA
72599705 CTATTTTG
1 CTATTTTG
72599713 TTGTTATTGT
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
11 26 1.00
ACGTcount: A:0.20, C:0.17, G:0.10, T:0.54
Consensus pattern (11 bp):
CTATTTTGCTA
Found at i:72599786 original size:30 final size:31
Alignment explanation
Indices: 72599750--72599813 Score: 94
Period size: 31 Copynumber: 2.1 Consensus size: 31
72599740 ACTTATTTTA
72599750 TTGTTAA-TTTTCTTATTATTTTAAAGACAT
1 TTGTTAATTTTTCTTATTATTTTAAAGACAT
* * *
72599780 TTGTTAATTTTTTTTATTATTTTAGAGGCAT
1 TTGTTAATTTTTCTTATTATTTTAAAGACAT
72599811 TTG
1 TTG
72599814 CTTGTTAAGT
Statistics
Matches: 30, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
30 7 0.23
31 23 0.77
ACGTcount: A:0.25, C:0.05, G:0.11, T:0.59
Consensus pattern (31 bp):
TTGTTAATTTTTCTTATTATTTTAAAGACAT
Found at i:72601350 original size:36 final size:36
Alignment explanation
Indices: 72601266--72601349 Score: 100
Period size: 35 Copynumber: 2.3 Consensus size: 36
72601256 AAAAAAATGA
* *
72601266 GAAAAGATAAAAATTATTAAAATTATTAAATTTTAAT
1 GAAAA-ATAAAAATTATTAAAATTATTAAAGTATAAT
*
72601303 GAAAAATAAAAATTA-TAAAATTTTATAAAGTATAA-
1 GAAAAATAAAAATTATTAAAATTAT-TAAAGTATAAT
*
72601338 GAAAATTAAAAA
1 GAAAAATAAAAA
72601350 AATGTAAAAA
Statistics
Matches: 42, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
35 19 0.45
36 18 0.43
37 5 0.12
ACGTcount: A:0.62, C:0.00, G:0.06, T:0.32
Consensus pattern (36 bp):
GAAAAATAAAAATTATTAAAATTATTAAAGTATAAT
Found at i:72601598 original size:38 final size:37
Alignment explanation
Indices: 72601543--72601616 Score: 112
Period size: 38 Copynumber: 2.0 Consensus size: 37
72601533 GTCAATGGTT
*
72601543 AAAGTTAATGGTTAAAGGGCCTTTTTGATACATTTTA
1 AAAGTTAATGGTCAAAGGGCCTTTTTGATACATTTTA
* *
72601580 NAAAGTTAGTGGTCAAAGGGCTTTTTTGATACATTTT
1 -AAAGTTAATGGTCAAAGGGCCTTTTTGATACATTTT
72601617 GATACTTCAA
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
38 33 1.00
ACGTcount: A:0.30, C:0.08, G:0.20, T:0.41
Consensus pattern (37 bp):
AAAGTTAATGGTCAAAGGGCCTTTTTGATACATTTTA
Found at i:72601804 original size:88 final size:89
Alignment explanation
Indices: 72601602--72601827 Score: 251
Period size: 88 Copynumber: 2.5 Consensus size: 89
72601592 TCAAAGGGCT
* * * * * *
72601602 TTTTTGATACATTTTGATACTTCAAGTACTCAATTGAGTGAAAAAAAAAGCAGGGGCTTAATTGC
1 TTTTTGATGCATTTTGAAAGTTTAAGTACCCAATTGAGTG--AAAAAAAGCAGGAGCTTAATTGC
* *
72601667 TTTTTGTTTAAAAAAGTTTGAAAATC
64 ATTTTGTTTAAAAAAGTTTCAAAATC
* * * *
72601693 TTTTTGATGTATTTCGAATGTTTAAGTACCCAATTGAGTGAAAGAAAA-CATGAGCTTAATTGCA
1 TTTTTGATGCATTTTGAAAGTTTAAGTACCCAATTGAGTGAAA-AAAAGCAGGAGCTTAATTGCA
* **
72601757 TTTT-TTTGAAAAAG-TTCAAGGGTC
65 TTTTGTTTAAAAAAGTTTCAA-AATC
*
72601781 TTTTTGATGCATTTTAAAAGTTTAAGTACCCAATTGAGTGAAAAAAA
1 TTTTTGATGCATTTTGAAAGTTTAAGTACCCAATTGAGTGAAAAAAA
72601828 TACATTTTTT
Statistics
Matches: 114, Mismatches: 19, Indels: 8
0.81 0.13 0.06
Matches are distributed among these distances:
87 8 0.07
88 50 0.44
89 20 0.18
90 4 0.04
91 32 0.28
ACGTcount: A:0.36, C:0.10, G:0.17, T:0.37
Consensus pattern (89 bp):
TTTTTGATGCATTTTGAAAGTTTAAGTACCCAATTGAGTGAAAAAAAGCAGGAGCTTAATTGCAT
TTTGTTTAAAAAAGTTTCAAAATC
Found at i:72601847 original size:20 final size:20
Alignment explanation
Indices: 72601819--72601869 Score: 84
Period size: 20 Copynumber: 2.5 Consensus size: 20
72601809 CCCAATTGAG
*
72601819 TGAAAAAAATACATTTTTTTT
1 TGAAAAAAATACA-TTTTTAT
72601840 TGAAAAAAATACATTTTTAT
1 TGAAAAAAATACATTTTTAT
72601860 TGAAAAAAAT
1 TGAAAAAAAT
72601870 TGTGAACTTT
Statistics
Matches: 29, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
20 16 0.55
21 13 0.45
ACGTcount: A:0.51, C:0.04, G:0.06, T:0.39
Consensus pattern (20 bp):
TGAAAAAAATACATTTTTAT
Found at i:72606246 original size:45 final size:45
Alignment explanation
Indices: 72606182--72606274 Score: 177
Period size: 45 Copynumber: 2.1 Consensus size: 45
72606172 TTTACTGTCG
*
72606182 AGAGACAATATCCCTATCCGTAATCAAGTCTACATCTTCCGATCC
1 AGAGACAATATCCCTATCCGTAATCAAGTCTACATCATCCGATCC
72606227 AGAGACAATATCCCTATCCGTAATCAAGTCTACATCATCCGATCC
1 AGAGACAATATCCCTATCCGTAATCAAGTCTACATCATCCGATCC
72606272 AGA
1 AGA
72606275 AATGAGATCA
Statistics
Matches: 47, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
45 47 1.00
ACGTcount: A:0.33, C:0.30, G:0.12, T:0.25
Consensus pattern (45 bp):
AGAGACAATATCCCTATCCGTAATCAAGTCTACATCATCCGATCC
Found at i:72609191 original size:40 final size:39
Alignment explanation
Indices: 72609136--72609270 Score: 162
Period size: 40 Copynumber: 3.3 Consensus size: 39
72609126 CAGCTACATG
*
72609136 TGGCACTTAGTGTGCGATTCGGAATAGCTTTGGCTATATA
1 TGGCACTTAGTGTGCGATTC-GAATAGCTTTGGCTATGTA
* **
72609176 TGGCACTTAGTGTGCGATTCGAGATAGCTTCGATTATGTA
1 TGGCACTTAGTGTGCGATTCGA-ATAGCTTTGGCTATGTA
* **
72609216 TGGCACTTAGTGTGTGAGATTAAAATAGCTTTGGCTATGTAA
1 TGGCACTTA--GTGTGCGATTCGAATAGCTTTGGCTATGT-A
72609258 TGGCACTTAGTGT
1 TGGCACTTAGTGT
72609271 ACGAGATATC
Statistics
Matches: 81, Mismatches: 10, Indels: 8
0.82 0.10 0.08
Matches are distributed among these distances:
39 2 0.02
40 46 0.57
41 13 0.16
42 20 0.25
ACGTcount: A:0.24, C:0.13, G:0.27, T:0.36
Consensus pattern (39 bp):
TGGCACTTAGTGTGCGATTCGAATAGCTTTGGCTATGTA
Found at i:72612232 original size:42 final size:42
Alignment explanation
Indices: 72612141--72612233 Score: 102
Period size: 42 Copynumber: 2.2 Consensus size: 42
72612131 AGAGGGCAGG
* *
72612141 AAGGGAAGGGAAGGGAAAAGGAAAGAAAAAAAAAAGGAGAAT
1 AAGGAAAGGGAAGGAAAAAGGAAAGAAAAAAAAAAGGAGAAT
* *
72612183 -AGAGAAAGGGAAGGAAAAAGAGAAGGAAAAAAATAAA-TA-AAT
1 AAG-GAAAGGGAAGGAAAAAG-GAAAGAAAAAAA-AAAGGAGAAT
72612225 AAGGAAAGG
1 AAGGAAAGG
72612234 AGAGTTTGTT
Statistics
Matches: 43, Mismatches: 4, Indels: 8
0.78 0.07 0.15
Matches are distributed among these distances:
41 2 0.05
42 24 0.56
43 14 0.33
44 3 0.07
ACGTcount: A:0.63, C:0.00, G:0.32, T:0.04
Consensus pattern (42 bp):
AAGGAAAGGGAAGGAAAAAGGAAAGAAAAAAAAAAGGAGAAT
Found at i:72612378 original size:12 final size:12
Alignment explanation
Indices: 72612357--72612397 Score: 55
Period size: 12 Copynumber: 3.4 Consensus size: 12
72612347 ATTTAATTCG
*
72612357 AATTCAATTTTT
1 AATTTAATTTTT
*
72612369 AATTTTATTTTT
1 AATTTAATTTTT
72612381 AATTTAATTTTT
1 AATTTAATTTTT
*
72612393 CATTT
1 AATTT
72612398 GCTGTGTGGG
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
12 25 1.00
ACGTcount: A:0.29, C:0.05, G:0.00, T:0.66
Consensus pattern (12 bp):
AATTTAATTTTT
Found at i:72616035 original size:28 final size:28
Alignment explanation
Indices: 72616004--72616098 Score: 88
Period size: 28 Copynumber: 3.4 Consensus size: 28
72615994 GATGTCTTGT
72616004 ACACTAAGTGCCATCTTCAATAATTTGC
1 ACACTAAGTGCCATCTTCAATAATTTGC
* * *
72616032 ACACTAAGTGCTAT-TTC-TTGATGTTTCGC
1 ACACTAAGTGCCATCTTCAAT-A-ATTT-GC
* *
72616061 ACACTAAGTTCCATCCTT-AATAATTCGC
1 ACACTAAGTGCCAT-CTTCAATAATTTGC
72616089 ACACTAAGTG
1 ACACTAAGTG
72616099 TCGTTTTCAC
Statistics
Matches: 52, Mismatches: 9, Indels: 12
0.71 0.12 0.16
Matches are distributed among these distances:
26 1 0.02
27 4 0.08
28 27 0.52
29 16 0.31
30 1 0.02
31 3 0.06
ACGTcount: A:0.29, C:0.24, G:0.13, T:0.34
Consensus pattern (28 bp):
ACACTAAGTGCCATCTTCAATAATTTGC
Found at i:72616075 original size:57 final size:56
Alignment explanation
Indices: 72615972--72616098 Score: 159
Period size: 57 Copynumber: 2.2 Consensus size: 56
72615962 CACGGACGTA
*
72615972 TCGCACACTAAGTGCCATCCTGGATGTCTTGTACACTAAGTGCCAT-CTTCAATAAT
1 TCGCACACTAAGTGCCATCCTGGATGTCTTGCACACTAAGTGCCATCCTT-AATAAT
* * * * *
72616028 TTGCACACTAAGTGCTATTTCTTGATGT-TTCGCACACTAAGTTCCATCCTTAATAAT
1 TCGCACACTAAGTGCCA-TCCTGGATGTCTT-GCACACTAAGTGCCATCCTTAATAAT
72616085 TCGCACACTAAGTG
1 TCGCACACTAAGTG
72616099 TCGTTTTCAC
Statistics
Matches: 61, Mismatches: 7, Indels: 5
0.84 0.10 0.07
Matches are distributed among these distances:
56 17 0.28
57 41 0.67
58 3 0.05
ACGTcount: A:0.27, C:0.25, G:0.15, T:0.33
Consensus pattern (56 bp):
TCGCACACTAAGTGCCATCCTGGATGTCTTGCACACTAAGTGCCATCCTTAATAAT
Done.