Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr9
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 91122320
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2661692 characters in sequence are not A, C, G, or T
File 223 of 279
Found at i:73012188 original size:13 final size:13
Alignment explanation
Indices: 73012170--73012194 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
73012160 TAAACCTATG
73012170 AAATAATAATAAT
1 AAATAATAATAAT
73012183 AAATAATAATAA
1 AAATAATAATAA
73012195 CAATAACATC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (13 bp):
AAATAATAATAAT
Found at i:73015314 original size:68 final size:67
Alignment explanation
Indices: 73015242--73015391 Score: 171
Period size: 67 Copynumber: 2.2 Consensus size: 67
73015232 CATCATGTGT
* * * *
73015242 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACC
1 ACAAGAGAGCTAC--GACA-TAT-ATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACC
73015304 ATGTAG
62 ATGTAG
** * *
73015310 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGT
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
73015375 AG
66 AG
73015377 ACAAGAGAGCTACGA
1 ACAAGAGAGCTACGA
73015392 GATAAACTGG
Statistics
Matches: 70, Mismatches: 9, Indels: 7
0.81 0.10 0.08
Matches are distributed among these distances:
64 20 0.29
65 7 0.10
66 4 0.06
67 26 0.37
68 13 0.19
ACGTcount: A:0.33, C:0.17, G:0.29, T:0.21
Consensus pattern (67 bp):
ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
AG
Found at i:73015347 original size:64 final size:64
Alignment explanation
Indices: 73015266--73015449 Score: 194
Period size: 67 Copynumber: 2.8 Consensus size: 64
73015256 AGACATTATG
* *
73015266 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * * *
73015330 ATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
73015395 AA
63 AA
* * * *
73015397 ACTG--GCTAGGTCACATGGGTGGTACTAAGTGTTCACCATGT-GTACAAGAGAGC
1 A-TGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAG-ACAAGAGAGC
73015450 CGAACTATAT
Statistics
Matches: 98, Mismatches: 17, Indels: 11
0.78 0.13 0.09
Matches are distributed among these distances:
62 1 0.01
63 19 0.19
64 21 0.21
65 8 0.08
66 16 0.16
67 31 0.32
68 2 0.02
ACGTcount: A:0.30, C:0.17, G:0.30, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:73017127 original size:20 final size:20
Alignment explanation
Indices: 73017102--73017169 Score: 77
Period size: 20 Copynumber: 3.4 Consensus size: 20
73017092 TATGTGTAAG
73017102 TGAATGAACGTTTTCAAATA
1 TGAATGAACGTTTTCAAATA
* * *
73017122 TGAATGAA-ATTTTTATGAA-G
1 TGAATGAACGTTTTCA--AATA
73017142 TGAATGAACGTTTTCAAATA
1 TGAATGAACGTTTTCAAATA
73017162 TGAATGAA
1 TGAATGAA
73017170 ATTTTTATGG
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
19 7 0.18
20 24 0.63
21 7 0.18
ACGTcount: A:0.41, C:0.06, G:0.18, T:0.35
Consensus pattern (20 bp):
TGAATGAACGTTTTCAAATA
Found at i:73017145 original size:40 final size:40
Alignment explanation
Indices: 73017099--73017178 Score: 160
Period size: 40 Copynumber: 2.0 Consensus size: 40
73017089 GACTATGTGT
73017099 AAGTGAATGAACGTTTTCAAATATGAATGAAATTTTTATG
1 AAGTGAATGAACGTTTTCAAATATGAATGAAATTTTTATG
73017139 AAGTGAATGAACGTTTTCAAATATGAATGAAATTTTTATG
1 AAGTGAATGAACGTTTTCAAATATGAATGAAATTTTTATG
73017179 GCCCGTATTT
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 40 1.00
ACGTcount: A:0.40, C:0.05, G:0.17, T:0.38
Consensus pattern (40 bp):
AAGTGAATGAACGTTTTCAAATATGAATGAAATTTTTATG
Found at i:73017499 original size:27 final size:26
Alignment explanation
Indices: 73017443--73017499 Score: 69
Period size: 26 Copynumber: 2.2 Consensus size: 26
73017433 CAACCTTAAC
* * *
73017443 CCTAGGGGTATATCAGTAATTTTGCT
1 CCTAGGGGTAAATCAGTAATTTTCCA
*
73017469 CCTAGGGGTAAATCTGTAAATTTTCCA
1 CCTAGGGGTAAATCAGT-AATTTTCCA
73017496 CCTA
1 CCTA
73017500 TAAAGGTATT
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
26 15 0.58
27 11 0.42
ACGTcount: A:0.26, C:0.19, G:0.19, T:0.35
Consensus pattern (26 bp):
CCTAGGGGTAAATCAGTAATTTTCCA
Found at i:73017805 original size:20 final size:21
Alignment explanation
Indices: 73017777--73017815 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 21
73017767 TGGGCCCGCA
73017777 AGCCCATTGA-GCCCAATTTT
1 AGCCCATTGAGGCCCAATTTT
*
73017797 AGCCTATTGAGGCCCAATT
1 AGCCCATTGAGGCCCAATT
73017816 ACCGAAGTGC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 9 0.53
21 8 0.47
ACGTcount: A:0.26, C:0.28, G:0.18, T:0.28
Consensus pattern (21 bp):
AGCCCATTGAGGCCCAATTTT
Found at i:73021740 original size:27 final size:26
Alignment explanation
Indices: 73021684--73021740 Score: 62
Period size: 26 Copynumber: 2.2 Consensus size: 26
73021674 CAACCTTAAC
* * *
73021684 CCTAGGGGTATATCAGTAATTTTGCT
1 CCTAGGGGTAAATCAGTAATTTTCCA
73021710 CCTAGGGGTAAATCTA-TAAATTTTCCA
1 CCTAGGGGTAAATC-AGT-AATTTTCCA
73021737 CCTA
1 CCTA
73021741 TAAAGGAATT
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
26 14 0.54
27 12 0.46
ACGTcount: A:0.28, C:0.19, G:0.18, T:0.35
Consensus pattern (26 bp):
CCTAGGGGTAAATCAGTAATTTTCCA
Found at i:73025189 original size:28 final size:29
Alignment explanation
Indices: 73025158--73025258 Score: 118
Period size: 28 Copynumber: 3.6 Consensus size: 29
73025148 ATGTGATTTA
*
73025158 GGCCTAAT-GGCCATATGAATGTGGTTTG
1 GGCCTAATGGGCCATATGAATGTGGATTG
* *
73025186 GGCCTAATGGGCCACATAAATGT-GATTG
1 GGCCTAATGGGCCATATGAATGTGGATTG
* * * *
73025214 GGCCTAATAGGTCATATGAAAG-AGATTG
1 GGCCTAATGGGCCATATGAATGTGGATTG
73025242 GGCCTAATGGGCCATAT
1 GGCCTAATGGGCCATAT
73025259 ACAGGTATGT
Statistics
Matches: 61, Mismatches: 10, Indels: 4
0.81 0.13 0.05
Matches are distributed among these distances:
28 49 0.80
29 12 0.20
ACGTcount: A:0.28, C:0.16, G:0.30, T:0.27
Consensus pattern (29 bp):
GGCCTAATGGGCCATATGAATGTGGATTG
Found at i:73025247 original size:56 final size:57
Alignment explanation
Indices: 73025145--73025255 Score: 154
Period size: 56 Copynumber: 2.0 Consensus size: 57
73025135 AGCATGATTG
* * *
73025145 TAAATGTGATTTAGGCCTAATGGCCATATGAATGTGGTTTGGGCCTAATGGGCCACA
1 TAAATGTGATTTAGGCCTAATGGCCATATGAAAGTAGATTGGGCCTAATGGGCCACA
* *
73025202 TAAATGTGA-TTGGGCCTAATAGGTCATATGAAAG-AGATTGGGCCTAATGGGCCA
1 TAAATGTGATTTAGGCCTAAT-GGCCATATGAAAGTAGATTGGGCCTAATGGGCCA
73025256 TATACAGGTA
Statistics
Matches: 48, Mismatches: 5, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
56 28 0.58
57 20 0.42
ACGTcount: A:0.29, C:0.14, G:0.29, T:0.28
Consensus pattern (57 bp):
TAAATGTGATTTAGGCCTAATGGCCATATGAAAGTAGATTGGGCCTAATGGGCCACA
Found at i:73027317 original size:37 final size:37
Alignment explanation
Indices: 73027267--73027345 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
73027257 TTATTACGAA
* * *
73027267 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
73027304 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
73027341 GTCTT
1 GTCTT
73027346 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:73027533 original size:47 final size:47
Alignment explanation
Indices: 73027464--73027890 Score: 836
Period size: 47 Copynumber: 9.1 Consensus size: 47
73027454 CCCTTCGGGA
* *
73027464 CTTATCACATTTATACACTTTCACATCCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
73027511 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
73027558 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
73027605 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
73027652 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
73027699 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
73027746 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
73027793 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
73027840 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
73027887 CTTA
1 CTTA
73027891 CTATCATTTC
Statistics
Matches: 378, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
47 378 1.00
ACGTcount: A:0.30, C:0.30, G:0.08, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:73041871 original size:23 final size:23
Alignment explanation
Indices: 73041845--73041890 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 23
73041835 TAGGAAAACT
73041845 TCATACCCATGAT-TTTACCATGC
1 TCATACCCATGATATTT-CCATGC
* *
73041868 TCATTCTCATGATATTTCCATGC
1 TCATACCCATGATATTTCCATGC
73041891 CAATGCCTCT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 17 0.85
24 3 0.15
ACGTcount: A:0.24, C:0.28, G:0.09, T:0.39
Consensus pattern (23 bp):
TCATACCCATGATATTTCCATGC
Found at i:73045874 original size:28 final size:29
Alignment explanation
Indices: 73045837--73045901 Score: 87
Period size: 28 Copynumber: 2.3 Consensus size: 29
73045827 AAGTCTACAT
*
73045837 ACATGCATATGGCCCACTAGGCCC-AATC
1 ACATTCATATGGCCCACTAGGCCCAAATC
* * *
73045865 TCATTCATATGGCCTATTAGGCCCAAATC
1 ACATTCATATGGCCCACTAGGCCCAAATC
73045894 ACATTCAT
1 ACATTCAT
73045902 GTACATGCTT
Statistics
Matches: 31, Mismatches: 5, Indels: 1
0.84 0.14 0.03
Matches are distributed among these distances:
28 20 0.65
29 11 0.35
ACGTcount: A:0.29, C:0.31, G:0.14, T:0.26
Consensus pattern (29 bp):
ACATTCATATGGCCCACTAGGCCCAAATC
Found at i:73064744 original size:44 final size:42
Alignment explanation
Indices: 73064669--73064820 Score: 123
Period size: 42 Copynumber: 3.6 Consensus size: 42
73064659 GGTATGTGTG
** * *
73064669 TTCGTGTAAGACCACATCTAGGA-TGTTGGCATCG-ACTTATGAT
1 TTCGTGTAAGACCATGTCTGGGACAG-TGGCATCGTA-TT-TGAT
73064712 TTACGTGTAAGACCATGTCTGGGACA-TCGGCATCGTATTTGAT
1 TT-CGTGTAAGACCATGTCTGGGACAGT-GGCATCGTATTTGAT
* * *
73064755 TTCTTGTAAGACCCTGTCTGGGACAGTGGCATCAATATTTG-T
1 TTCGTGTAAGACCATGTCTGGGACAGTGGCATC-GTATTTGAT
* * * *
73064797 TACATGTAAGACCACGTCTAGGAC
1 TTCGTGTAAGACCATGTCTGGGAC
73064821 GTTCGCATTG
Statistics
Matches: 91, Mismatches: 12, Indels: 13
0.78 0.10 0.11
Matches are distributed among these distances:
42 47 0.52
43 16 0.18
44 27 0.30
45 1 0.01
ACGTcount: A:0.25, C:0.20, G:0.24, T:0.32
Consensus pattern (42 bp):
TTCGTGTAAGACCATGTCTGGGACAGTGGCATCGTATTTGAT
Found at i:73064773 original size:42 final size:43
Alignment explanation
Indices: 73064708--73064820 Score: 124
Period size: 42 Copynumber: 2.7 Consensus size: 43
73064698 CATCGACTTA
* *
73064708 TGATTTACGTGTAAGACCATGTCTGGGACA-TCGGCATC-GTATT
1 TGATTT-CATGTAAGACCATGTCTGGGACAGT-GGCATCAATATT
* *
73064751 TGATTTCTTGTAAGACCCTGTCTGGGACAGTGGCATCAATATT
1 TGATTTCATGTAAGACCATGTCTGGGACAGTGGCATCAATATT
* * *
73064794 TG-TTACATGTAAGACCACGTCTAGGAC
1 TGATTTCATGTAAGACCATGTCTGGGAC
73064821 GTTCGCATTG
Statistics
Matches: 60, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
42 47 0.78
43 13 0.22
ACGTcount: A:0.25, C:0.19, G:0.24, T:0.32
Consensus pattern (43 bp):
TGATTTCATGTAAGACCATGTCTGGGACAGTGGCATCAATATT
Found at i:73067928 original size:27 final size:27
Alignment explanation
Indices: 73067898--73067977 Score: 70
Period size: 32 Copynumber: 2.7 Consensus size: 27
73067888 CCCTCATCAG
**
73067898 AATCAATTGGGCCTAGCCCATTCTCAA
1 AATCAATTGGGCCTAGCCCATTAACAA
73067925 AATCAGTAAAGTTGGGCCTAGCCCATTAACAA
1 AATC----AA-TTGGGCCTAGCCCATTAACAA
**
73067957 AATCAGGTGGGCCTAAGCCCA
1 AATCAATTGGGCCT-AGCCCA
73067978 ATACAGAATC
Statistics
Matches: 43, Mismatches: 4, Indels: 11
0.74 0.07 0.19
Matches are distributed among these distances:
27 11 0.26
28 7 0.16
31 2 0.05
32 23 0.53
ACGTcount: A:0.33, C:0.26, G:0.20, T:0.21
Consensus pattern (27 bp):
AATCAATTGGGCCTAGCCCATTAACAA
Found at i:73067987 original size:27 final size:27
Alignment explanation
Indices: 73067937--73067989 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
73067927 TCAGTAAAGT
*
73067937 TGGGCCTAGCCCATTAACAAAATCAGG
1 TGGGCCTAGCCCAATAACAAAATCAGG
*
73067964 TGGGCCTAAGCCCAAT-ACAGAATCAG
1 TGGGCCT-AGCCCAATAACAAAATCAG
73067990 TATCAGATGT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
27 16 0.70
28 7 0.30
ACGTcount: A:0.34, C:0.26, G:0.23, T:0.17
Consensus pattern (27 bp):
TGGGCCTAGCCCAATAACAAAATCAGG
Found at i:73068163 original size:22 final size:22
Alignment explanation
Indices: 73068138--73068180 Score: 77
Period size: 22 Copynumber: 2.0 Consensus size: 22
73068128 TAACAGGATG
*
73068138 GCTCAATGTCGTAGACAGGACA
1 GCTCAATGCCGTAGACAGGACA
73068160 GCTCAATGCCGTAGACAGGAC
1 GCTCAATGCCGTAGACAGGAC
73068181 GACTAAAGGC
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.30, C:0.26, G:0.28, T:0.16
Consensus pattern (22 bp):
GCTCAATGCCGTAGACAGGACA
Found at i:73072188 original size:28 final size:28
Alignment explanation
Indices: 73072136--73072266 Score: 97
Period size: 28 Copynumber: 4.6 Consensus size: 28
73072126 TCTCAAAATT
* *
73072136 TCACACACTCAGTGCCTTCAC-GGATGTA
1 TCACACACTAAGTGCCATC-CTGGATGTA
* *
73072164 TCACGCACTAAGTGCCATCCTGGATGTC
1 TCACACACTAAGTGCCATCCTGGATGTA
** * *
73072192 TCGTACACTAAGTGCCATCCTCGAT-AA
1 TCACACACTAAGTGCCATCCTGGATGTA
* * *
73072219 TTCATC-CACTAAGAGCCATTTCTGGATGTT
1 -TCA-CACACTAAGTGCCA-TCCTGGATGTA
*
73072249 TCGCACACTAAGTGCCAT
1 TCACACACTAAGTGCCAT
73072267 TTTTCAAAAT
Statistics
Matches: 78, Mismatches: 19, Indels: 12
0.72 0.17 0.11
Matches are distributed among these distances:
27 1 0.01
28 58 0.74
29 19 0.24
ACGTcount: A:0.25, C:0.30, G:0.18, T:0.27
Consensus pattern (28 bp):
TCACACACTAAGTGCCATCCTGGATGTA
Found at i:73074244 original size:212 final size:210
Alignment explanation
Indices: 73073844--73074246 Score: 549
Period size: 212 Copynumber: 1.9 Consensus size: 210
73073834 ACCCGAATTA
*
73073844 GGGCCTAATCAGAATAGGGTTTCGTGACCACAAATCCGAGATAGAAATAATTATTTTATAATTAT
1 GGGCCTAATCAGAATAGGATTTCGTGACCACAAATCCGAGATAGAAATAATTATTTTATAATTAT
* * * **
73073909 TTTAGGGTTTATGATATGATTTCATGATTTCGTGAAAATTTCATGATGAAATTCTATGCATTGAG
66 TTTAGGGTCTATGATATGATTGCATGATTTCGTGAAAATTTCATGAAGAAATTCTATGCATAAAG
* * * * ** *
73073974 CGCTTCAGTTGAGATTAGGGACTAAACCGAATAAATTGTAAAACTCGTGTTTTAGAAGTTTTTTG
131 CGCTTAAATTGAAATTAGCGACTAAACCGAATAAATTGTAAAACTCGCATTCTAGAAGTTTTTTG
73074039 TAATATTCTGATTTT
196 TAATATTCTGATTTT
* * * *
73074054 GGGCCTAGTCGGAATAGCGATTTTGTGACCACAAAATCCGAGATAGAAATAATTATTTTATGATT
1 GGGCCTAATCAGAATAG-GATTTCGTGACCAC-AAATCCGAGATAGAAATAATTATTTTATAATT
* *
73074119 ATTTT-GAGGTCTATGATATGATTGCATGATTGT-GTGAAAATTTCGTGAAGAAATTTTATGCAT
64 ATTTTAG-GGTCTATGATATGATTGCATGATT-TCGTGAAAATTTCATGAAGAAATTCTATGCAT
* * * *
73074182 AAAGTGCTTAAATTGAAATTAGCGACTAAATCGAATAATTTGTAAAACTTGCATTCTAGAAGTTT
127 AAAGCGCTTAAATTGAAATTAGCGACTAAACCGAATAAATTGTAAAACTCGCATTCTAGAAGTTT
73074247 CTAGTATGAA
Statistics
Matches: 166, Mismatches: 23, Indels: 6
0.85 0.12 0.03
Matches are distributed among these distances:
210 15 0.09
211 13 0.08
212 137 0.83
213 1 0.01
ACGTcount: A:0.33, C:0.11, G:0.19, T:0.37
Consensus pattern (210 bp):
GGGCCTAATCAGAATAGGATTTCGTGACCACAAATCCGAGATAGAAATAATTATTTTATAATTAT
TTTAGGGTCTATGATATGATTGCATGATTTCGTGAAAATTTCATGAAGAAATTCTATGCATAAAG
CGCTTAAATTGAAATTAGCGACTAAACCGAATAAATTGTAAAACTCGCATTCTAGAAGTTTTTTG
TAATATTCTGATTTT
Found at i:73077873 original size:15 final size:15
Alignment explanation
Indices: 73077853--73077921 Score: 84
Period size: 15 Copynumber: 4.6 Consensus size: 15
73077843 GTATCTTGGG
73077853 TTTCTTTATCCTGGA
1 TTTCTTTATCCTGGA
* *
73077868 TCTCTTTATTCTGGA
1 TTTCTTTATCCTGGA
* *
73077883 TTTCTTTATTCTGGG
1 TTTCTTTATCCTGGA
* *
73077898 TTTCTCTATCTTGGA
1 TTTCTTTATCCTGGA
73077913 TTTCTTTAT
1 TTTCTTTAT
73077922 TCGGTTTTCT
Statistics
Matches: 45, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
15 45 1.00
ACGTcount: A:0.12, C:0.17, G:0.13, T:0.58
Consensus pattern (15 bp):
TTTCTTTATCCTGGA
Found at i:73077922 original size:30 final size:30
Alignment explanation
Indices: 73077844--73077931 Score: 99
Period size: 30 Copynumber: 3.0 Consensus size: 30
73077834 CATAGTATCG
* * * *
73077844 TATCTTGGGTTTCTTTATCCTGGATCTCTT
1 TATCTTGGATTTCTTTATTCTGGATTTCTC
*
73077874 TAT-TCTGGATTTCTTTATTCTGGGTTTCTC
1 TATCT-TGGATTTCTTTATTCTGGATTTCTC
*
73077904 TATCTTGGATTTCTTTATTC-GGTTTTCT
1 TATCTTGGATTTCTTTATTCTGGATTTCT
73077932 TGTTATCTTT
Statistics
Matches: 50, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
29 8 0.16
30 41 0.82
31 1 0.02
ACGTcount: A:0.10, C:0.17, G:0.16, T:0.57
Consensus pattern (30 bp):
TATCTTGGATTTCTTTATTCTGGATTTCTC
Found at i:73080376 original size:46 final size:46
Alignment explanation
Indices: 73080326--73080501 Score: 225
Period size: 46 Copynumber: 3.8 Consensus size: 46
73080316 TGGTTGAGCA
73080326 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
73080372 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
73080417 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
73080465 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
73080502 GCGGGTTACA
Statistics
Matches: 112, Mismatches: 9, Indels: 18
0.81 0.06 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.04
45 3 0.03
46 64 0.57
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:73080482 original size:93 final size:93
Alignment explanation
Indices: 73080323--73080493 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
73080313 GGATGGTTGA
* *
73080323 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
73080388 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
73080416 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
73080481 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
73080494 ACTTATGGGC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.21, C:0.22, G:0.29, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:73087553 original size:44 final size:42
Alignment explanation
Indices: 73087469--73087630 Score: 132
Period size: 43 Copynumber: 3.8 Consensus size: 42
73087459 ATAGGATTCG
*
73087469 GTATTTGTTTTCGTGTAAGACCACGTCTAGGACACTGGCATC
1 GTATTTGATTTCGTGTAAGACCACGTCTAGGACACTGGCATC
* * *
73087511 G-ACTTATGATTTACGTGTAAGACCATGTCTGGGATA-TCGGCATC
1 GTA-TT-TGATTT-CGTGTAAGACCACGTCTAGGACACT-GGCATC
* * * * *
73087555 GTATTTGATTTCTTGTAAGACC-CTGTTTAGGACAGTGTCATT
1 GTATTTGATTTCGTGTAAGACCAC-GTCTAGGACACTGGCATC
* * * *
73087597 GATATTTGATTACATGTAAGACCATGTCTGGGAC
1 G-TATTTGATTTCGTGTAAGACCACGTCTAGGAC
73087631 GTTCGCATTG
Statistics
Matches: 95, Mismatches: 16, Indels: 17
0.74 0.12 0.13
Matches are distributed among these distances:
41 1 0.01
42 25 0.26
43 39 0.41
44 29 0.31
45 1 0.01
ACGTcount: A:0.24, C:0.17, G:0.23, T:0.35
Consensus pattern (42 bp):
GTATTTGATTTCGTGTAAGACCACGTCTAGGACACTGGCATC
Found at i:73087607 original size:86 final size:85
Alignment explanation
Indices: 73087469--73087629 Score: 209
Period size: 86 Copynumber: 1.9 Consensus size: 85
73087459 ATAGGATTCG
* *
73087469 GTATTTGTTTTCGTGTAAGACCACGTCTAGGACACTGGCATCGACTTATGATTTACGTGTAAGAC
1 GTATTTGATTTCGTGTAAGACCACGTCTAGGACACTGGCATCGACTTATGA-TTACATGTAAGAC
73087534 CATGTCTGGGATATCGGCATC
65 CATGTCTGGGATATCGGCATC
* * * * * *
73087555 GTATTTGATTTCTTGTAAGACC-CTGTTTAGGACAGTGTCATTGA-TATTTGATTACATGTAAGA
1 GTATTTGATTTCGTGTAAGACCAC-GTCTAGGACACTGGCATCGACT-TATGATTACATGTAAGA
73087618 CCATGTCTGGGA
64 CCATGTCTGGGA
73087630 CGTTCGCATT
Statistics
Matches: 65, Mismatches: 8, Indels: 5
0.83 0.10 0.06
Matches are distributed among these distances:
85 25 0.38
86 40 0.62
ACGTcount: A:0.24, C:0.17, G:0.24, T:0.35
Consensus pattern (85 bp):
GTATTTGATTTCGTGTAAGACCACGTCTAGGACACTGGCATCGACTTATGATTACATGTAAGACC
ATGTCTGGGATATCGGCATC
Found at i:73119887 original size:152 final size:154
Alignment explanation
Indices: 73119610--73119920 Score: 470
Period size: 152 Copynumber: 2.0 Consensus size: 154
73119600 GGTCATATGC
*
73119610 ACAATAAAATATTGTATAGTTAGCTTCAAGGCCTATTTTGATTTTTCCATATATTGTTGGCTAAT
1 ACAATAAAATATTGTATAGTCAGCTTCAAGGCCTATTTTGATTTTTCCATATATTGTTGGCTAAT
* *
73119675 AAAGCTAAGTGCCAGATAAAGTTCCATTTAGGGGGAATTAACAGATTGCAATTAGAACCAATA-T
66 AAAGCCAAGTGCCAGATAAAGTTCCATTTAGGGGGAATAAACAGATTGCAATTAGAACCAATACT
* *
73119739 CTATGTCTATCAAAAATTTGCAAA
131 CTATGTCCATCAAAAAATTGCAAA
*
73119763 ACAATAAAATATTGTATTGTCAGCTTCAAGGCCTATTTTGATTTTTCCATATA-TGTTGGCTAAT
1 ACAATAAAATATTGTATAGTCAGCTTCAAGGCCTATTTTGATTTTTCCATATATTGTTGGCTAAT
**
73119827 AAAGCCAAGTATC-GAATCAAA-TTCCATTTA-GGGGAATAAAACAGATTGCAATTAGAACCAAT
66 AAAGCCAAGTGCCAG-AT-AAAGTTCCATTTAGGGGGAAT-AAACAGATTGCAATTAGAACCAAT
*
73119889 ATCTCTATGTCCATCAAAAAATTGCAAT
128 A-CTCTATGTCCATCAAAAAATTGCAAA
73119917 ACAA
1 ACAA
73119921 CTTGTATCAT
Statistics
Matches: 144, Mismatches: 9, Indels: 9
0.89 0.06 0.06
Matches are distributed among these distances:
151 8 0.06
152 56 0.39
153 54 0.38
154 26 0.18
ACGTcount: A:0.38, C:0.15, G:0.14, T:0.33
Consensus pattern (154 bp):
ACAATAAAATATTGTATAGTCAGCTTCAAGGCCTATTTTGATTTTTCCATATATTGTTGGCTAAT
AAAGCCAAGTGCCAGATAAAGTTCCATTTAGGGGGAATAAACAGATTGCAATTAGAACCAATACT
CTATGTCCATCAAAAAATTGCAAA
Found at i:73121952 original size:27 final size:27
Alignment explanation
Indices: 73121901--73121952 Score: 68
Period size: 27 Copynumber: 1.9 Consensus size: 27
73121891 ACTTAAAAAA
* * **
73121901 TTTAATTAATTATTAAAATGTCCTATT
1 TTTAATTAAATACTAAAATAACCTATT
73121928 TTTAATTAAATACTAAAATAACCTA
1 TTTAATTAAATACTAAAATAACCTA
73121953 AATCTACAGT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 21 1.00
ACGTcount: A:0.44, C:0.10, G:0.02, T:0.44
Consensus pattern (27 bp):
TTTAATTAAATACTAAAATAACCTATT
Found at i:73122209 original size:44 final size:43
Alignment explanation
Indices: 73122146--73122228 Score: 103
Period size: 44 Copynumber: 1.9 Consensus size: 43
73122136 ACACCCATTG
** * * *
73122146 TTATTTTTTTTTATTTTTTTTTACTTTTGTCATTTCTCTTACAC
1 TTATTTTTTTAAAATTTTTTTAACTTTTGTC-TTTATCTTACAC
*
73122190 TTATTTTTTTAAAATTTTTTTAATTTTTGTCTTTATCTT
1 TTATTTTTTTAAAATTTTTTTAACTTTTGTCTTTATCTT
73122229 TATTTATTCA
Statistics
Matches: 33, Mismatches: 6, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
43 7 0.21
44 26 0.79
ACGTcount: A:0.17, C:0.10, G:0.02, T:0.71
Consensus pattern (43 bp):
TTATTTTTTTAAAATTTTTTTAACTTTTGTCTTTATCTTACAC
Found at i:73122248 original size:5 final size:5
Alignment explanation
Indices: 73122221--73122271 Score: 61
Period size: 5 Copynumber: 10.2 Consensus size: 5
73122211 AATTTTTGTC
*
73122221 TTTAT CTTTA- TTTA- TTCAT TTTAT TTTAT TTTAT TTTAT TTTAT TATTAT
1 TTTAT -TTTAT TTTAT TTTAT TTTAT TTTAT TTTAT TTTAT TTTAT T-TTAT
73122271 T
1 T
73122272 AATTTTAAAA
Statistics
Matches: 41, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
4 7 0.17
5 25 0.61
6 9 0.22
ACGTcount: A:0.22, C:0.04, G:0.00, T:0.75
Consensus pattern (5 bp):
TTTAT
Found at i:73122400 original size:13 final size:14
Alignment explanation
Indices: 73122365--73122400 Score: 51
Period size: 13 Copynumber: 2.8 Consensus size: 14
73122355 ATTTTTCTAA
73122365 ATTTT-AAA-TATT
1 ATTTTAAAATTATT
73122377 ATTTTAAAATTATT
1 ATTTTAAAATTATT
73122391 -TTTTAAAATT
1 ATTTTAAAATT
73122401 TTAAATATAT
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
12 5 0.23
13 13 0.59
14 4 0.18
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (14 bp):
ATTTTAAAATTATT
Found at i:73122497 original size:22 final size:22
Alignment explanation
Indices: 73122472--73122541 Score: 79
Period size: 22 Copynumber: 3.1 Consensus size: 22
73122462 TATTATTAGT
*
73122472 TTTATAATATTTTAAATGTATA
1 TTTATAATATTTTAAATATATA
* *
73122494 TTTAAAATGTTTTATAATATATA
1 TTTATAATATTTTA-AATATATA
*
73122517 TTTTTTAA-ATTTTAAATATATA
1 -TTTATAATATTTTAAATATATA
73122539 TTT
1 TTT
73122542 TTGAATTTAT
Statistics
Matches: 40, Mismatches: 6, Indels: 5
0.78 0.12 0.10
Matches are distributed among these distances:
21 3 0.08
22 20 0.50
23 12 0.30
24 5 0.12
ACGTcount: A:0.40, C:0.00, G:0.03, T:0.57
Consensus pattern (22 bp):
TTTATAATATTTTAAATATATA
Found at i:73122537 original size:20 final size:20
Alignment explanation
Indices: 73122512--73122632 Score: 65
Period size: 20 Copynumber: 6.7 Consensus size: 20
73122502 GTTTTATAAT
73122512 ATATATTTTTTAAATTTTAA
1 ATATATTTTTTAAATTTTAA
*
73122532 ATATATATTTTTGAA--TT--
1 ATATAT-TTTTTAAATTTTAA
*
73122549 -TAT-TTTTCTAAATTTTAA
1 ATATATTTTTTAAATTTTAA
73122567 ATAT-TATTTTTAAA---T--
1 ATATAT-TTTTTAAATTTTAA
* *
73122582 -TAT-TTTTTAAAAATTTAA
1 ATATATTTTTTAAATTTTAA
*
73122600 ATATTATTTTTT-AATATTAA
1 ATA-TATTTTTTAAATTTTAA
73122620 ATATATTTTTTAA
1 ATATATTTTTTAA
73122633 TAATATAAAA
Statistics
Matches: 77, Mismatches: 8, Indels: 32
0.66 0.07 0.27
Matches are distributed among these distances:
13 7 0.09
14 10 0.13
15 1 0.01
16 6 0.08
17 1 0.01
19 16 0.21
20 24 0.31
21 12 0.16
ACGTcount: A:0.39, C:0.01, G:0.01, T:0.60
Consensus pattern (20 bp):
ATATATTTTTTAAATTTTAA
Found at i:73122597 original size:22 final size:22
Alignment explanation
Indices: 73122580--73122646 Score: 77
Period size: 22 Copynumber: 3.1 Consensus size: 22
73122570 TTATTTTTAA
73122580 ATTATTTTTTAAAAATTTAAAT
1 ATTATTTTTTAAAAATTTAAAT
*
73122602 ATTATTTTTT-AATA-TTAAAT
1 ATTATTTTTTAAAAATTTAAAT
* *
73122622 A-TATTTTTTAATAATATAAAAT
1 ATTATTTTTTAAAAAT-TTAAAT
73122644 ATT
1 ATT
73122647 TAAATATTTT
Statistics
Matches: 37, Mismatches: 4, Indels: 7
0.77 0.08 0.15
Matches are distributed among these distances:
19 8 0.22
20 9 0.24
21 3 0.08
22 16 0.43
23 1 0.03
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (22 bp):
ATTATTTTTTAAAAATTTAAAT
Found at i:73122610 original size:33 final size:33
Alignment explanation
Indices: 73122322--73122610 Score: 173
Period size: 33 Copynumber: 8.8 Consensus size: 33
73122312 AATATACATA
73122322 TTTTTAAAATTTTAAATATATATTTTTGAAATTAT
1 TTTTTAAAATTTTAAATAT-TATTTTT-AAATTAT
*
73122357 TTTTCT-AAATTTTAAATATTATTTTAAAATTAT
1 TTTT-TAAAATTTTAAATATTATTTTTAAATTAT
73122390 TTTTTAAAATTTTAAATA-TATTTTT-AA-TA-
1 TTTTTAAAATTTTAAATATTATTTTTAAATTAT
* * * * *
73122419 ATATAAAAAGTTT-AA-A-TA-TTTTAAAGATAT
1 TTTTTAAAATTTTAAATATTATTTTTAAA-TTAT
** * * *
73122449 GGCGTTTCAAA-TTT-ATTATTAGTTTTATAA-TA-
1 --TTTTTAAAATTTTAAATATTATTTTTA-AATTAT
*
73122481 -TTTTAAATGTATATTTAAA-ATGT-TTTATAATATATAT
1 TTTTTAAA---AT-TTTAAATAT-TATTTTTAA-AT-TAT
*
73122518 TTTTT-AAATTTTAAATATATATTTTTGAATTTAT
1 TTTTTAAAATTTTAAATAT-TATTTTT-AAATTAT
73122552 TTTTCT-AAATTTTAAATATTATTTTTAAATTAT
1 TTTT-TAAAATTTTAAATATTATTTTTAAATTAT
*
73122585 TTTTTAAAAATTTAAATATTATTTTT
1 TTTTTAAAATTTTAAATATTATTTTT
73122611 TAATATTAAA
Statistics
Matches: 203, Mismatches: 22, Indels: 60
0.71 0.08 0.21
Matches are distributed among these distances:
26 4 0.02
27 5 0.02
28 2 0.01
29 16 0.08
30 2 0.01
31 6 0.03
32 14 0.07
33 63 0.31
34 40 0.20
35 40 0.20
36 5 0.02
37 2 0.01
38 4 0.02
ACGTcount: A:0.39, C:0.01, G:0.03, T:0.56
Consensus pattern (33 bp):
TTTTTAAAATTTTAAATATTATTTTTAAATTAT
Found at i:73122645 original size:20 final size:20
Alignment explanation
Indices: 73122576--73122647 Score: 87
Period size: 20 Copynumber: 3.6 Consensus size: 20
73122566 AATATTATTT
*
73122576 TTAAAT-TATTTTTTAAAAA
1 TTAAATATATTTTTTAATAA
73122595 TTTAAATATTATTTTTTAAT-A
1 -TTAAATA-TATTTTTTAATAA
73122616 TTAAATATATTTTTTAATAA
1 TTAAATATATTTTTTAATAA
73122636 TATAAA-ATATTT
1 T-TAAATATATTT
73122648 AAATATTTTA
Statistics
Matches: 47, Mismatches: 1, Indels: 8
0.84 0.02 0.14
Matches are distributed among these distances:
19 11 0.23
20 21 0.45
21 5 0.11
22 10 0.21
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (20 bp):
TTAAATATATTTTTTAATAA
Found at i:73122790 original size:23 final size:22
Alignment explanation
Indices: 73122757--73122800 Score: 61
Period size: 23 Copynumber: 2.0 Consensus size: 22
73122747 AAATATTTAA
* *
73122757 ATATTTTATATTATTAAAAATAT
1 ATATTTAATATT-TAAAAAATAT
73122780 ATATTTAATATTTAAAAAATA
1 ATATTTAATATTTAAAAAATA
73122801 ACATTTTAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
22 8 0.42
23 11 0.58
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (22 bp):
ATATTTAATATTTAAAAAATAT
Found at i:73122857 original size:32 final size:35
Alignment explanation
Indices: 73122773--73122880 Score: 116
Period size: 32 Copynumber: 3.2 Consensus size: 35
73122763 TATATTATTA
* *
73122773 AAAATATATATTTAATATTTAAAAAATAACATTTT
1 AAAATATATATTTAAAATTTTAAAAATAACATTTT
* *
73122808 AAAAAATATATTCAAAATTTTAAAAAT-A-A-TTT
1 AAAATATATATTTAAAATTTTAAAAATAACATTTT
* * * *
73122840 CAAATATATATTTAAAATTTTAAATAT-ATATTAT
1 AAAATATATATTTAAAATTTTAAAAATAACATTTT
73122874 AAAATAT
1 AAAATAT
73122881 TTCAAATATA
Statistics
Matches: 61, Mismatches: 10, Indels: 5
0.80 0.13 0.07
Matches are distributed among these distances:
32 27 0.44
33 2 0.03
34 9 0.15
35 23 0.38
ACGTcount: A:0.56, C:0.03, G:0.00, T:0.42
Consensus pattern (35 bp):
AAAATATATATTTAAAATTTTAAAAATAACATTTT
Found at i:73122858 original size:20 final size:20
Alignment explanation
Indices: 73122835--73122903 Score: 93
Period size: 20 Copynumber: 3.2 Consensus size: 20
73122825 TTTTAAAAAT
73122835 AATTTCAAATATATATTTAA
1 AATTTCAAATATATATTTAA
*
73122855 AATTTTAAATATATATTATAAA
1 AATTTCAAATATATATT-T-AA
73122877 ATATTTCAAATATATATTTTAA
1 A-ATTTCAAATATATA-TTTAA
73122899 AATTT
1 AATTT
73122904 TTAAAATTAA
Statistics
Matches: 43, Mismatches: 2, Indels: 7
0.83 0.04 0.13
Matches are distributed among these distances:
20 16 0.37
21 5 0.12
22 6 0.14
23 14 0.33
24 2 0.05
ACGTcount: A:0.49, C:0.03, G:0.00, T:0.48
Consensus pattern (20 bp):
AATTTCAAATATATATTTAA
Found at i:73122887 original size:23 final size:23
Alignment explanation
Indices: 73122810--73122910 Score: 108
Period size: 23 Copynumber: 4.6 Consensus size: 23
73122800 AACATTTTAA
73122810 AAAATATATTCAAA-AT-T-TTA-
1 AAAATAT-TTCAAATATATATTAT
73122830 AAAATAATTTCAAATATATATT-T
1 AAAAT-ATTTCAAATATATATTAT
73122853 AAAAT-TTT-AAATATATATTAT
1 AAAATATTTCAAATATATATTAT
*
73122874 AAAATATTTCAAATATATATTTT
1 AAAATATTTCAAATATATATTAT
* *
73122897 AAAATTTTTAAAAT
1 AAAATATTTCAAAT
73122911 TAATAATAAA
Statistics
Matches: 70, Mismatches: 3, Indels: 13
0.81 0.03 0.15
Matches are distributed among these distances:
20 22 0.31
21 13 0.19
22 4 0.06
23 31 0.44
ACGTcount: A:0.52, C:0.03, G:0.00, T:0.45
Consensus pattern (23 bp):
AAAATATTTCAAATATATATTAT
Found at i:73122920 original size:44 final size:44
Alignment explanation
Indices: 73122830--73122921 Score: 127
Period size: 44 Copynumber: 2.1 Consensus size: 44
73122820 CAAAATTTTA
*
73122830 AAAATAATTTCAAATATATATTTAAAATTTTAAATATATATTAT
1 AAAATAATTTCAAATATATATTTAAAATTTTAAATATATATAAT
73122874 AAAAT-ATTTCAAATATATATTTTAAAATTTTTAAA-AT-TAATAAT
1 AAAATAATTTCAAATATATA-TTTAAAA-TTTTAAATATAT-ATAAT
73122918 AAAA
1 AAAA
73122922 AATAAGTAAA
Statistics
Matches: 44, Mismatches: 1, Indels: 6
0.86 0.02 0.12
Matches are distributed among these distances:
43 15 0.34
44 22 0.50
45 7 0.16
ACGTcount: A:0.54, C:0.02, G:0.00, T:0.43
Consensus pattern (44 bp):
AAAATAATTTCAAATATATATTTAAAATTTTAAATATATATAAT
Found at i:73124183 original size:17 final size:17
Alignment explanation
Indices: 73124163--73124197 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
73124153 TTTATAAAAT
* *
73124163 CAAATCTTTTAATATTA
1 CAAATCTTCTAAGATTA
73124180 CAAATCTTCTAAGATTA
1 CAAATCTTCTAAGATTA
73124197 C
1 C
73124198 TTCCCATATT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.40, C:0.17, G:0.03, T:0.40
Consensus pattern (17 bp):
CAAATCTTCTAAGATTA
Found at i:73124946 original size:13 final size:13
Alignment explanation
Indices: 73124928--73124959 Score: 57
Period size: 13 Copynumber: 2.5 Consensus size: 13
73124918 AAATTTAGGA
73124928 TTATTCTAATATC
1 TTATTCTAATATC
73124941 TTATTCTAATATC
1 TTATTCTAATATC
73124954 TT-TTCT
1 TTATTCT
73124960 CTTTCGATTC
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
12 4 0.21
13 15 0.79
ACGTcount: A:0.25, C:0.16, G:0.00, T:0.59
Consensus pattern (13 bp):
TTATTCTAATATC
Found at i:73125417 original size:16 final size:17
Alignment explanation
Indices: 73125383--73125420 Score: 51
Period size: 16 Copynumber: 2.3 Consensus size: 17
73125373 GGTTTAATTT
*
73125383 TTTTATTCGTTTGTCTA
1 TTTTATTCGTTTCTCTA
*
73125400 TTTTATT-GTTTCTTTA
1 TTTTATTCGTTTCTCTA
73125416 TTTTA
1 TTTTA
73125421 ATTATTTAAT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
16 12 0.63
17 7 0.37
ACGTcount: A:0.13, C:0.08, G:0.08, T:0.71
Consensus pattern (17 bp):
TTTTATTCGTTTCTCTA
Found at i:73132211 original size:13 final size:14
Alignment explanation
Indices: 73132195--73132230 Score: 51
Period size: 13 Copynumber: 2.8 Consensus size: 14
73132185 CAATCTCATA
73132195 TCTCAATTTCAA-T
1 TCTCAATTTCAATT
73132208 TCTCAA-TTCAATT
1 TCTCAATTTCAATT
73132221 TCTC-ATTTCA
1 TCTCAATTTCA
73132231 TTCCAATAGT
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
12 6 0.29
13 15 0.71
ACGTcount: A:0.28, C:0.25, G:0.00, T:0.47
Consensus pattern (14 bp):
TCTCAATTTCAATT
Found at i:73132220 original size:18 final size:19
Alignment explanation
Indices: 73132182--73132222 Score: 59
Period size: 18 Copynumber: 2.2 Consensus size: 19
73132172 TGGTTCATGT
73132182 TTTCAATCTCATATCTCAA
1 TTTCAATCTCATATCTCAA
73132201 TTTCAATTCTCA-AT-TCAA
1 TTTCAA-TCTCATATCTCAA
73132219 TTTC
1 TTTC
73132223 TCATTTCATT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
18 8 0.38
19 8 0.38
20 5 0.24
ACGTcount: A:0.29, C:0.24, G:0.00, T:0.46
Consensus pattern (19 bp):
TTTCAATCTCATATCTCAA
Found at i:73132411 original size:21 final size:21
Alignment explanation
Indices: 73132386--73132470 Score: 80
Period size: 21 Copynumber: 4.0 Consensus size: 21
73132376 TGATCAGTAT
*
73132386 ACGACACATAAAGTGCCTAAA
1 ACGACACACAAAGTGCCTAAA
* * * *
73132407 ACGACACACGAGGTGCCTGAT
1 ACGACACACAAAGTGCCTAAA
* *
73132428 ACGACACACGAGGTGCCTGAAA
1 ACGACACACAAAGTGCCT-AAA
*
73132450 TACGACACATAAAGTGCCTAA
1 -ACGACACACAAAGTGCCTAA
73132471 TCGATAAAGC
Statistics
Matches: 52, Mismatches: 10, Indels: 3
0.80 0.15 0.05
Matches are distributed among these distances:
21 34 0.65
22 3 0.06
23 15 0.29
ACGTcount: A:0.39, C:0.26, G:0.21, T:0.14
Consensus pattern (21 bp):
ACGACACACAAAGTGCCTAAA
Found at i:73132436 original size:23 final size:22
Alignment explanation
Indices: 73132384--73132458 Score: 91
Period size: 21 Copynumber: 3.5 Consensus size: 22
73132374 CCTGATCAGT
** *
73132384 ATACGACACATAAAGTGCCT-A
1 ATACGACACACGAGGTGCCTGA
*
73132405 AAACGACACACGAGGTGCCTG-
1 ATACGACACACGAGGTGCCTGA
73132426 ATACGACACACGAGGTGCCTGAA
1 ATACGACACACGAGGTGCCTG-A
73132449 ATACGACACA
1 ATACGACACA
73132459 TAAAGTGCCT
Statistics
Matches: 46, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
21 36 0.78
23 10 0.22
ACGTcount: A:0.39, C:0.27, G:0.21, T:0.13
Consensus pattern (22 bp):
ATACGACACACGAGGTGCCTGA
Found at i:73132866 original size:15 final size:15
Alignment explanation
Indices: 73132841--73132898 Score: 89
Period size: 15 Copynumber: 3.8 Consensus size: 15
73132831 TCATATATAT
73132841 TATATAATTCAATCAA
1 TATA-AATTCAATCAA
73132857 TATAAATTCAATCAA
1 TATAAATTCAATCAA
* *
73132872 AATAATTTCAATCAA
1 TATAAATTCAATCAA
73132887 TATAAATTCAAT
1 TATAAATTCAAT
73132899 AAAACAGATA
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
15 34 0.89
16 4 0.11
ACGTcount: A:0.52, C:0.12, G:0.00, T:0.36
Consensus pattern (15 bp):
TATAAATTCAATCAA
Found at i:73132883 original size:30 final size:28
Alignment explanation
Indices: 73132844--73132902 Score: 100
Period size: 30 Copynumber: 2.0 Consensus size: 28
73132834 TATATATTAT
73132844 ATAATTCAATCAATATAAATTCAATCAAA
1 ATAATTCAATCAATATAAATTCAAT-AAA
73132873 ATAATTTCAATCAATATAAATTCAATAAA
1 ATAA-TTCAATCAATATAAATTCAATAAA
73132902 A
1 A
73132903 CAGATATTCA
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
29 8 0.28
30 21 0.72
ACGTcount: A:0.56, C:0.12, G:0.00, T:0.32
Consensus pattern (28 bp):
ATAATTCAATCAATATAAATTCAATAAA
Found at i:73152397 original size:42 final size:42
Alignment explanation
Indices: 73152351--73152509 Score: 180
Period size: 42 Copynumber: 3.6 Consensus size: 42
73152341 CATAGTTTAA
*
73152351 CTATGGTCTTACACATGTTCACATAAT-GATGCCATAGCCCAG
1 CTATGGTCTTACACATATTCACAT-ATCGATGCCATAGCCCAG
* * *
73152393 CTATGGTCTTACACATATTTATATATCGATGCCATAGCCCAA
1 CTATGGTCTTACACATATTCACATATCGATGCCATAGCCCAG
73152435 CTATGGTCTTACACGTAATCACATATCACATATCGATGCCATAGCCCAG
1 CTATGGTCTTACAC---AT---AT-TCACATATCGATGCCATAGCCCAG
73152484 CTATGGTCTTACACGA-A-TCACATATC
1 CTATGGTCTTACAC-ATATTCACATATC
73152510 TCACTGATGC
Statistics
Matches: 101, Mismatches: 8, Indels: 17
0.80 0.06 0.13
Matches are distributed among these distances:
41 11 0.11
42 49 0.49
43 1 0.01
45 2 0.02
47 1 0.01
48 2 0.02
49 35 0.35
ACGTcount: A:0.30, C:0.26, G:0.14, T:0.30
Consensus pattern (42 bp):
CTATGGTCTTACACATATTCACATATCGATGCCATAGCCCAG
Found at i:73152592 original size:47 final size:46
Alignment explanation
Indices: 73152378--73152587 Score: 205
Period size: 47 Copynumber: 4.6 Consensus size: 46
73152368 TTCACATAAT
* ** * *
73152378 GATGCCATAGCCCAGCTATGGTCTTACAC--AT-ATTTAT-ATATC
1 GATGCCATAGCCCAGATATGGTCTTACACGTATCACATATCACACC
*
73152420 GATGCCATAGCCCA-ACTATGGTCTTACACGTAATCACATATCACATATC
1 GATGCCATAGCCCAGA-TATGGTCTTACACGT-ATCACATATCAC--ACC
* * * *
73152469 GATGCCATAGCCCAGCTATGGTCTTACACGAATCACATATCTCACT
1 GATGCCATAGCCCAGATATGGTCTTACACGTATCACATATCACACC
* * * *
73152515 GATGCCATATCCCAGATATGGTCTTATACAGTAGCATATATCACACC
1 GATGCCATAGCCCAGATATGGTCTTACAC-GTATCACATATCACACC
*
73152562 GATGCCATATCCCAGATATGGTCTTA
1 GATGCCATAGCCCAGATATGGTCTTA
73152588 TACAGAAATC
Statistics
Matches: 141, Mismatches: 17, Indels: 15
0.82 0.10 0.09
Matches are distributed among these distances:
42 27 0.19
45 2 0.01
46 31 0.22
47 39 0.28
48 11 0.08
49 31 0.22
ACGTcount: A:0.30, C:0.27, G:0.15, T:0.29
Consensus pattern (46 bp):
GATGCCATAGCCCAGATATGGTCTTACACGTATCACATATCACACC
Found at i:73152607 original size:93 final size:94
Alignment explanation
Indices: 73152378--73152587 Score: 229
Period size: 95 Copynumber: 2.3 Consensus size: 94
73152368 TTCACATAAT
* ** *
73152378 GATGCCATAGCCCAGCTATGGTCTTACAC--AT-ATTTATAT-A-TCGATGCCATAGCCCAACTA
1 GATGCCATAGCCCAGATATGGTCTTACACGAATCACATATCTCACT-GATGCCATAGCCCAACTA
* *
73152438 TGGTCTTACACGTAATCACATATCACATATC
65 TGGTCTTACACGTAAGCACATATCACA-ACC
* *
73152469 GATGCCATAGCCCAGCTATGGTCTTACACGAATCACATATCTCACTGATGCCATATCCCAGA-TA
1 GATGCCATAGCCCAGATATGGTCTTACACGAATCACATATCTCACTGATGCCATAGCCCA-ACTA
* *
73152533 TGGTCTTATACAGT-AGCATATATCAC-ACC
65 TGGTCTTACAC-GTAAGCACATATCACAACC
*
73152562 GATGCCATATCCCAGATATGGTCTTA
1 GATGCCATAGCCCAGATATGGTCTTA
73152588 TACAGAAATC
Statistics
Matches: 102, Mismatches: 10, Indels: 12
0.82 0.08 0.10
Matches are distributed among these distances:
91 29 0.28
93 28 0.27
94 5 0.05
95 36 0.35
96 4 0.04
ACGTcount: A:0.30, C:0.27, G:0.15, T:0.29
Consensus pattern (94 bp):
GATGCCATAGCCCAGATATGGTCTTACACGAATCACATATCTCACTGATGCCATAGCCCAACTAT
GGTCTTACACGTAAGCACATATCACAACC
Found at i:73152644 original size:31 final size:31
Alignment explanation
Indices: 73152609--73152757 Score: 208
Period size: 31 Copynumber: 4.8 Consensus size: 31
73152599 CTTGTCACTT
* * *
73152609 GTAGTCGAAGCTACCACTATTCACTAATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
* * *
73152640 GTAGTCGGAGCTACCATTTTTCACTGATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
* *
73152671 GTAGCCGGAGATACCACTTTTCACTGATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
*
73152702 GTAGCAGAAGCTACCACTTTTCACTGATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
*
73152733 GTAGCCAAAGCTACCACTTTTCACT
1 GTAGCCGAAGCTACCACTTTTCACT
73152758 TGTCATTTGT
Statistics
Matches: 106, Mismatches: 12, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 106 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.28
Consensus pattern (31 bp):
GTAGCCGAAGCTACCACTTTTCACTGATCAG
Found at i:73152832 original size:50 final size:50
Alignment explanation
Indices: 73152733--73152859 Score: 175
Period size: 50 Copynumber: 2.5 Consensus size: 50
73152723 CACTGATCAG
* * *
73152733 GTAGCCAAAGCTACCACTTTTCACTTGTCATTTGTCCTTGATCAGATAAGT
1 GTAGCC-AAGCTATCACTTATCACTTGTCATTTGTCCTTGATCAAATAAGT
* *
73152784 GTAGCCGAAGCTATTACTTATCACTT-TCATTTGTCCTTGATTAAATAAGT
1 GTAGCC-AAGCTATCACTTATCACTTGTCATTTGTCCTTGATCAAATAAGT
73152834 GTAGCCAGAGCTATCACTTATCACTT
1 GTAGCCA-AGCTATCACTTATCACTT
73152860 ATTTCCATGA
Statistics
Matches: 68, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
49 1 0.01
50 45 0.66
51 22 0.32
ACGTcount: A:0.27, C:0.22, G:0.15, T:0.36
Consensus pattern (50 bp):
GTAGCCAAGCTATCACTTATCACTTGTCATTTGTCCTTGATCAAATAAGT
Found at i:73158440 original size:51 final size:51
Alignment explanation
Indices: 73158302--73158581 Score: 192
Period size: 51 Copynumber: 5.5 Consensus size: 51
73158292 ATGCCCGGTG
* * * *
73158302 GCCTGCACTTAGTACTACCCTTGT-AGTCAAAGCTACCTTCTT-CACAAAGT-
1 GCCTGCACTTAGTACTACACATGTGA-TCAAAGCTATCTT-TTACACATAGTA
* * * * * * *
73158352 GACCTTCACATAGTACCACACTTGTGACCAAATCTATCTTTTACACATAGTG
1 G-CCTGCACTTAGTACTACACATGTGATCAAAGCTATCTTTTACACATAGTA
* * * *** * *
73158404 GCCTACACTTAGTACCACACATGTGATCGAAGCTATCGGGTACGCGTAGTA
1 GCCTGCACTTAGTACTACACATGTGATCAAAGCTATCTTTTACACATAGTA
* * ** *
73158455 GCCTGCACTTAGTACTACACATGTGATCTAA-CCATCTGGTACACGTAGTA
1 GCCTGCACTTAGTACTACACATGTGATCAAAGCTATCTTTTACACATAGTA
* * * * * *
73158505 GCCTGCACTTAGTACTGCACACGTGACCTAAAACCAT-TTTAAACACATAGTA
1 GCCTGCACTTAGTACTACACATGTGATC-AAAGCTATCTTT-TACACATAGTA
* *
73158557 GCCTACACATAGTACTACACATGTG
1 GCCTGCACTTAGTACTACACATGTG
73158582 TTCTCACAAC
Statistics
Matches: 185, Mismatches: 38, Indels: 12
0.79 0.16 0.05
Matches are distributed among these distances:
50 44 0.24
51 105 0.57
52 36 0.19
ACGTcount: A:0.30, C:0.27, G:0.16, T:0.27
Consensus pattern (51 bp):
GCCTGCACTTAGTACTACACATGTGATCAAAGCTATCTTTTACACATAGTA
Found at i:73158514 original size:50 final size:50
Alignment explanation
Indices: 73158393--73158581 Score: 189
Period size: 50 Copynumber: 3.7 Consensus size: 50
73158383 ATCTATCTTT
* * * * *
73158393 TACACATAGTGGCCTACACTTAGTACCACACATGTGATCGAAGCTATCGGG
1 TACACATAGTAGCCTACACTTAGTACTACACATGTGATCTAA-CCATCTGG
* * *
73158444 TACGCGTAGTAGCCTGCACTTAGTACTACACATGTGATCTAACCATCTGG
1 TACACATAGTAGCCTACACTTAGTACTACACATGTGATCTAACCATCTGG
* * * * * * **
73158494 TACACGTAGTAGCCTGCACTTAGTACTGCACACGTGACCTAAAACCATTTTA
1 TACACATAGTAGCCTACACTTAGTACTACACATGTGATCT--AACCATCTGG
* *
73158546 AACACATAGTAGCCTACACATAGTACTACACATGTG
1 TACACATAGTAGCCTACACTTAGTACTACACATGTG
73158582 TTCTCACAAC
Statistics
Matches: 115, Mismatches: 21, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
50 42 0.37
51 36 0.31
52 37 0.32
ACGTcount: A:0.31, C:0.26, G:0.18, T:0.25
Consensus pattern (50 bp):
TACACATAGTAGCCTACACTTAGTACTACACATGTGATCTAACCATCTGG
Found at i:73166310 original size:26 final size:27
Alignment explanation
Indices: 73166258--73166310 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
73166248 ATTCAACGCC
* *
73166258 TAGGGGTATTTTGGTCAATTTTGCCTT
1 TAGGGGCATTTTGGTCAATTTTCCCTT
*
73166285 TAGGGGCATTTTTGT-AATTTTCCCTT
1 TAGGGGCATTTTGGTCAATTTTCCCTT
73166311 AATTATGGTT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
26 10 0.43
27 13 0.57
ACGTcount: A:0.15, C:0.13, G:0.23, T:0.49
Consensus pattern (27 bp):
TAGGGGCATTTTGGTCAATTTTCCCTT
Found at i:73166654 original size:29 final size:29
Alignment explanation
Indices: 73166621--73166737 Score: 175
Period size: 29 Copynumber: 4.1 Consensus size: 29
73166611 CTATATTCCC
*
73166621 ATGGCCTATTAGGCCCAAGTCACATTTAT
1 ATGGCCTATTAGGCCCAAATCACATTTAT
73166650 ATGGCCCT-TTAGGCCCAAATCACATTTAT
1 ATGG-CCTATTAGGCCCAAATCACATTTAT
*
73166679 GTGGCCTATTAGGCCCAAATCACATTTAT
1 ATGGCCTATTAGGCCCAAATCACATTTAT
* *
73166708 GTGGCCCATTAGGCCCAAATCACA-TTAT
1 ATGGCCTATTAGGCCCAAATCACATTTAT
73166736 AT
1 AT
73166738 TCATGCTCAC
Statistics
Matches: 82, Mismatches: 4, Indels: 5
0.90 0.04 0.05
Matches are distributed among these distances:
28 8 0.10
29 71 0.87
30 3 0.04
ACGTcount: A:0.28, C:0.26, G:0.16, T:0.30
Consensus pattern (29 bp):
ATGGCCTATTAGGCCCAAATCACATTTAT
Found at i:73166690 original size:58 final size:58
Alignment explanation
Indices: 73166622--73166733 Score: 197
Period size: 58 Copynumber: 1.9 Consensus size: 58
73166612 TATATTCCCA
* *
73166622 TGGCCTATTAGGCCCAAGTCACATTTATATGGCCCTTTAGGCCCAAATCACATTTATG
1 TGGCCTATTAGGCCCAAATCACATTTATATGGCCCATTAGGCCCAAATCACATTTATG
*
73166680 TGGCCTATTAGGCCCAAATCACATTTATGTGGCCCATTAGGCCCAAATCACATT
1 TGGCCTATTAGGCCCAAATCACATTTATATGGCCCATTAGGCCCAAATCACATT
73166734 ATATTCATGC
Statistics
Matches: 51, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
58 51 1.00
ACGTcount: A:0.27, C:0.27, G:0.17, T:0.29
Consensus pattern (58 bp):
TGGCCTATTAGGCCCAAATCACATTTATATGGCCCATTAGGCCCAAATCACATTTATG
Found at i:73166975 original size:16 final size:16
Alignment explanation
Indices: 73166954--73166991 Score: 67
Period size: 16 Copynumber: 2.4 Consensus size: 16
73166944 CAAACTTTCA
*
73166954 GCTTTTCGGCATTTTG
1 GCTTTTCAGCATTTTG
73166970 GCTTTTCAGCATTTTG
1 GCTTTTCAGCATTTTG
73166986 GCTTTT
1 GCTTTT
73166992 GCTGATCTAC
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.08, C:0.18, G:0.21, T:0.53
Consensus pattern (16 bp):
GCTTTTCAGCATTTTG
Found at i:73168879 original size:11 final size:11
Alignment explanation
Indices: 73168863--73168898 Score: 72
Period size: 11 Copynumber: 3.3 Consensus size: 11
73168853 CAATGCCATT
73168863 AGCTTAGTATA
1 AGCTTAGTATA
73168874 AGCTTAGTATA
1 AGCTTAGTATA
73168885 AGCTTAGTATA
1 AGCTTAGTATA
73168896 AGC
1 AGC
73168899 CTATACAACA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 25 1.00
ACGTcount: A:0.36, C:0.11, G:0.19, T:0.33
Consensus pattern (11 bp):
AGCTTAGTATA
Found at i:73170363 original size:60 final size:60
Alignment explanation
Indices: 73170264--73170400 Score: 172
Period size: 60 Copynumber: 2.3 Consensus size: 60
73170254 CAGTGTTAAC
* *
73170264 TGGGCCTTAGCCCATATCAATATTAATCTGGGCCATAGCCC-CTTAC-AGTATC-AGAGTATAT
1 TGGGCC-TAGCCCATATCAATATCAATCTGGGCCATAGCCCTATTACAAG--TCGAGA-TATAT
* *
73170325 TGGGCCTAGCCCATATCAGTATCAATCTGGGCCGTAGCCCTATTACAAGTCGAGATATAT
1 TGGGCCTAGCCCATATCAATATCAATCTGGGCCATAGCCCTATTACAAGTCGAGATATAT
*
73170385 TGGGCCTTGCCCATAT
1 TGGGCCTAGCCCATAT
73170401 TAACATAGTT
Statistics
Matches: 68, Mismatches: 5, Indels: 7
0.85 0.06 0.09
Matches are distributed among these distances:
60 53 0.78
61 13 0.19
62 2 0.03
ACGTcount: A:0.26, C:0.26, G:0.20, T:0.28
Consensus pattern (60 bp):
TGGGCCTAGCCCATATCAATATCAATCTGGGCCATAGCCCTATTACAAGTCGAGATATAT
Found at i:73170364 original size:28 final size:27
Alignment explanation
Indices: 73170263--73170364 Score: 80
Period size: 28 Copynumber: 3.5 Consensus size: 27
73170253 TCAGTGTTAA
* *
73170263 CTGGGCCTTAGCCCATATCAATATTAAT
1 CTGGGCC-TAGCCCATATCAGTATCAAT
*
73170291 CTGGGCCATAGCCCCT-TACAGTATCAGAGTAT
1 CTGGGCC-TAGCCCATAT-CAGTATC--A--AT
*
73170323 ATTGGGCCTAGCCCATATCAGTATCAAT
1 -CTGGGCCTAGCCCATATCAGTATCAAT
73170351 CTGGGCCGTAGCCC
1 CTGGGCC-TAGCCC
73170365 TATTACAAGT
Statistics
Matches: 59, Mismatches: 7, Indels: 16
0.72 0.09 0.20
Matches are distributed among these distances:
27 7 0.12
28 27 0.46
30 2 0.03
32 16 0.27
33 7 0.12
ACGTcount: A:0.25, C:0.28, G:0.21, T:0.26
Consensus pattern (27 bp):
CTGGGCCTAGCCCATATCAGTATCAAT
Found at i:73171952 original size:24 final size:24
Alignment explanation
Indices: 73171897--73172111 Score: 355
Period size: 24 Copynumber: 9.0 Consensus size: 24
73171887 AACAATAACN
*
73171897 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTG
73171920 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTG
73171944 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTG
73171968 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTG
*
73171992 ATAACTGGGGCATAAGCCCTTTTTA
1 ATAACTGGGGCATAAGCCC-TTTTG
*
73172017 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTG
73172040 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTG
* *
73172064 ATAACTTGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTG
73172087 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTG
73172111 A
1 A
73172112 ACTTCCTCCA
Statistics
Matches: 181, Mismatches: 7, Indels: 7
0.93 0.04 0.04
Matches are distributed among these distances:
23 63 0.35
24 95 0.52
25 23 0.13
ACGTcount: A:0.27, C:0.21, G:0.23, T:0.29
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTG
Found at i:73172109 original size:47 final size:48
Alignment explanation
Indices: 73171897--73172111 Score: 355
Period size: 47 Copynumber: 4.5 Consensus size: 48
73171887 AACAATAACN
* *
73171897 ATAACTGGGGCATAAGCCC-TTTAATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCCTTTTA
*
73171944 ATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCCTTTTA
*
73171992 ATAACTGGGGCATAAGCCCTTTTTAATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCC-TTTTGATAACTGGGGCATAAGCCCTTTTA
*
73172040 ATAACTGGGGCATAAGCCCTTTTGATAACTTGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCCTTTTA
73172087 ATAACTGGGGCATAAGCCCTTTTGA
1 ATAACTGGGGCATAAGCCCTTTTGA
73172112 ACTTCCTCCA
Statistics
Matches: 161, Mismatches: 5, Indels: 4
0.95 0.03 0.02
Matches are distributed among these distances:
47 70 0.43
48 68 0.42
49 23 0.14
ACGTcount: A:0.27, C:0.21, G:0.23, T:0.29
Consensus pattern (48 bp):
ATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCCTTTTA
Found at i:73172181 original size:9 final size:9
Alignment explanation
Indices: 73172167--73172223 Score: 51
Period size: 9 Copynumber: 5.9 Consensus size: 9
73172157 ATCTCATGTG
73172167 CATATCATA
1 CATATCATA
*
73172176 CATATCATGTG
1 CATATCA--TA
73172187 CATATCATA
1 CATATCATA
* *
73172196 CATGTCATGTG
1 CATATCA--TA
73172207 CATATCATA
1 CATATCATA
73172216 CATATCAT
1 CATATCAT
73172224 GTTTATCAAA
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
9 23 0.61
11 15 0.39
ACGTcount: A:0.35, C:0.21, G:0.09, T:0.35
Consensus pattern (9 bp):
CATATCATA
Found at i:73172183 original size:20 final size:20
Alignment explanation
Indices: 73172155--73172225 Score: 124
Period size: 20 Copynumber: 3.5 Consensus size: 20
73172145 GCATTTATGA
*
73172155 ACATCTCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
73172175 ACATATCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
*
73172195 ACATGTCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
73172215 ACATATCATGT
1 ACATATCATGT
73172226 TTATCAAAAT
Statistics
Matches: 48, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 48 1.00
ACGTcount: A:0.32, C:0.21, G:0.11, T:0.35
Consensus pattern (20 bp):
ACATATCATGTGCATATCAT
Found at i:73172190 original size:11 final size:11
Alignment explanation
Indices: 73172160--73172214 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
73172150 TATGAACATC
73172160 TCATGTGCATA
1 TCATGTGCATA
*
73172171 TCA--TACATA
1 TCATGTGCATA
73172180 TCATGTGCATA
1 TCATGTGCATA
* *
73172191 TCA--TACATG
1 TCATGTGCATA
73172200 TCATGTGCATA
1 TCATGTGCATA
73172211 TCAT
1 TCAT
73172215 ACATATCATG
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
9 15 0.44
11 19 0.56
ACGTcount: A:0.31, C:0.20, G:0.13, T:0.36
Consensus pattern (11 bp):
TCATGTGCATA
Found at i:73183485 original size:33 final size:33
Alignment explanation
Indices: 73183443--73184236 Score: 1588
Period size: 33 Copynumber: 24.1 Consensus size: 33
73183433 CCGTACACCA
73183443 TTGTTTTGGACCGAGCTTGGTGATAGTAAAATT
1 TTGTTTTGGACCGAGCTTGGTGATAGTAAAATT
73183476 TTGTTTTGGACCGAGCTTGGTGATAGTAAAATT
1 TTGTTTTGGACCGAGCTTGGTGATAGTAAAATT
73183509 TTGTTTTGGACCGAGCTTGGTGATAGTAAAATT
1 TTGTTTTGGACCGAGCTTGGTGATAGTAAAATT
73183542 TTGTTTTGGACCGAGCTTGGTGATAGTAAAATT
1 TTGTTTTGGACCGAGCTTGGTGATAGTAAAATT
73183575 TTGTTTTGGACCGAGCTTGGTGATAGTAAAATT
1 TTGTTTTGGACCGAGCTTGGTGATAGTAAAATT
73183608 TTGTTTTGGACCGAGCTTGGTGATAGTAAAATT
1 TTGTTTTGGACCGAGCTTGGTGATAGTAAAATT
73183641 TTGTTTTGGACCGAGCTTGGTGATAGTAAAATT
1 TTGTTTTGGACCGAGCTTGGTGATAGTAAAATT
73183674 TTGTTTTGGACCGAGCTTGGTGATAGTAAAATT
1 TTGTTTTGGACCGAGCTTGGTGATAGTAAAATT
73183707 TTGTTTTGGACCGAGCTTGGTGATAGTAAAATT
1 TTGTTTTGGACCGAGCTTGGTGATAGTAAAATT
73183740 TTGTTTTGGACCGAGCTTGGTGATAGTAAAATT
1 TTGTTTTGGACCGAGCTTGGTGATAGTAAAATT
73183773 TTGTTTTGGACCGAGCTTGGTGATAGTAAAATT
1 TTGTTTTGGACCGAGCTTGGTGATAGTAAAATT
73183806 TTGTTTTGGACCGAGCTTGGTGATAGTAAAATT
1 TTGTTTTGGACCGAGCTTGGTGATAGTAAAATT
73183839 TTGTTTTGGACCGAGCTTGGTGATAGTAAAATT
1 TTGTTTTGGACCGAGCTTGGTGATAGTAAAATT
73183872 TTGTTTTGGACCGAGCTTGGTGATAGTAAAATT
1 TTGTTTTGGACCGAGCTTGGTGATAGTAAAATT
73183905 TTGTTTTGGACCGAGCTTGGTGATAGTAAAATT
1 TTGTTTTGGACCGAGCTTGGTGATAGTAAAATT
73183938 TTGTTTTGGACCGAGCTTGGTGATAGTAAAATT
1 TTGTTTTGGACCGAGCTTGGTGATAGTAAAATT
73183971 TTGTTTTGGACCGAGCTTGGTGATAGTAAAATT
1 TTGTTTTGGACCGAGCTTGGTGATAGTAAAATT
73184004 TTGTTTTGGACCGAGCTTGGTGATAGTAAAATT
1 TTGTTTTGGACCGAGCTTGGTGATAGTAAAATT
73184037 TTGTTTTGGACCGAGCTTGGTGATAGTAAAATT
1 TTGTTTTGGACCGAGCTTGGTGATAGTAAAATT
73184070 TTGTTTTGGACCGAGCTTGGTGATAGTAAAATT
1 TTGTTTTGGACCGAGCTTGGTGATAGTAAAATT
73184103 TTGTTTTGGACCGAGCTTGGTGATAGTAAAATT
1 TTGTTTTGGACCGAGCTTGGTGATAGTAAAATT
73184136 TTGTTTTGGACCGAGCTTGGTGATAGTAAAATT
1 TTGTTTTGGACCGAGCTTGGTGATAGTAAAATT
73184169 TTGTTTTGGACCGAGCTTGGTGATAGTAAAATT
1 TTGTTTTGGACCGAGCTTGGTGATAGTAAAATT
73184202 TTGTTTTGGACCGAGCTTGGTGATAGTAAAATT
1 TTGTTTTGGACCGAGCTTGGTGATAGTAAAATT
73184235 TT
1 TT
73184237 CGGAGTTGAT
Statistics
Matches: 761, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 761 1.00
ACGTcount: A:0.24, C:0.09, G:0.27, T:0.40
Consensus pattern (33 bp):
TTGTTTTGGACCGAGCTTGGTGATAGTAAAATT
Found at i:73185207 original size:56 final size:56
Alignment explanation
Indices: 73185121--73185501 Score: 744
Period size: 56 Copynumber: 6.8 Consensus size: 56
73185111 ATGAGGGGCA
73185121 AAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGCATGGGCAAAACATGTCATG
1 AAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGCATGGGCAAAACATGTCATG
*
73185177 AAACATGTTGTGCTAATGGAAAAATAAAATAAGAAGCATGGGCAAAACATGTCATG
1 AAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGCATGGGCAAAACATGTCATG
73185233 AAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGCATGGGCAAAACATGTCATG
1 AAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGCATGGGCAAAACATGTCATG
73185289 AAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGCATGGGCAAAACATGTCATG
1 AAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGCATGGGCAAAACATGTCATG
73185345 AAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGCATGGGCAAAACATGTCATG
1 AAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGCATGGGCAAAACATGTCATG
73185401 AAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGCATGGGCAAAACATGTCATG
1 AAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGCATGGGCAAAACATGTCATG
*
73185457 AAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGCATGGGCAA
1 AAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGCATGGGCAA
73185502 TAAACTAATA
Statistics
Matches: 322, Mismatches: 3, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
56 322 1.00
ACGTcount: A:0.46, C:0.09, G:0.22, T:0.23
Consensus pattern (56 bp):
AAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGCATGGGCAAAACATGTCATG
Found at i:73194274 original size:20 final size:21
Alignment explanation
Indices: 73194249--73194288 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
73194239 AAGTATTCAA
*
73194249 ATGGAATCAA-GCATGAACTT
1 ATGGAAACAATGCATGAACTT
*
73194269 ATGGAAAGAATGCATGAACT
1 ATGGAAACAATGCATGAACT
73194289 AATTGATGTA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 8 0.47
21 9 0.53
ACGTcount: A:0.42, C:0.12, G:0.23, T:0.23
Consensus pattern (21 bp):
ATGGAAACAATGCATGAACTT
Found at i:73195891 original size:23 final size:22
Alignment explanation
Indices: 73195864--73195910 Score: 69
Period size: 23 Copynumber: 2.1 Consensus size: 22
73195854 GGTTTGCATG
73195864 TTATTTTCT-GTTTTTAGTTTAGT
1 TTATTTT-TAGTTTTTA-TTTAGT
73195887 TTATTTTTAGTTTTTATTTAGT
1 TTATTTTTAGTTTTTATTTAGT
73195909 TT
1 TT
73195911 TCTTAAGGAC
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
22 9 0.39
23 14 0.61
ACGTcount: A:0.15, C:0.02, G:0.11, T:0.72
Consensus pattern (22 bp):
TTATTTTTAGTTTTTATTTAGT
Found at i:73195897 original size:11 final size:11
Alignment explanation
Indices: 73195873--73195911 Score: 53
Period size: 11 Copynumber: 3.5 Consensus size: 11
73195863 GTTATTTTCT
73195873 GTTTTTAGTTTA
1 GTTTTTA-TTTA
73195885 GTTTATT-TTTA
1 GTTT-TTATTTA
73195896 GTTTTTATTTA
1 GTTTTTATTTA
73195907 GTTTT
1 GTTTT
73195912 CTTAAGGACA
Statistics
Matches: 25, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
10 2 0.08
11 17 0.68
12 4 0.16
13 2 0.08
ACGTcount: A:0.15, C:0.00, G:0.13, T:0.72
Consensus pattern (11 bp):
GTTTTTATTTA
Found at i:73200452 original size:18 final size:17
Alignment explanation
Indices: 73200418--73200460 Score: 52
Period size: 18 Copynumber: 2.5 Consensus size: 17
73200408 GAACAAGAAC
*
73200418 TTGAGAAATTTAAGAGA
1 TTGAGAAAGTTAAGAGA
*
73200435 GTTGAGAAAGTTAGGAGA
1 -TTGAGAAAGTTAAGAGA
73200453 TT-AGAAAG
1 TTGAGAAAG
73200461 AATTGAGAGA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
16 6 0.26
17 2 0.09
18 15 0.65
ACGTcount: A:0.44, C:0.00, G:0.30, T:0.26
Consensus pattern (17 bp):
TTGAGAAAGTTAAGAGA
Found at i:73202554 original size:4 final size:4
Alignment explanation
Indices: 73202545--73202569 Score: 50
Period size: 4 Copynumber: 6.2 Consensus size: 4
73202535 GAACCCCGAC
73202545 CCCT CCCT CCCT CCCT CCCT CCCT C
1 CCCT CCCT CCCT CCCT CCCT CCCT C
73202570 TTTTTTTTTT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 21 1.00
ACGTcount: A:0.00, C:0.76, G:0.00, T:0.24
Consensus pattern (4 bp):
CCCT
Found at i:73206696 original size:21 final size:20
Alignment explanation
Indices: 73206666--73206721 Score: 58
Period size: 21 Copynumber: 2.7 Consensus size: 20
73206656 CTCGTGAATT
73206666 GATTTAAAATGATTTAAAAAA
1 GATTTAAAAT-ATTTAAAAAA
* * *
73206687 GATTTCAAATTTTTAAAAATT
1 GATTTAAAATATTTAAAAA-A
*
73206708 GATTTAATATATTT
1 GATTTAAAATATTT
73206722 TCTATACTTC
Statistics
Matches: 28, Mismatches: 6, Indels: 2
0.78 0.17 0.06
Matches are distributed among these distances:
20 8 0.29
21 20 0.71
ACGTcount: A:0.46, C:0.02, G:0.07, T:0.45
Consensus pattern (20 bp):
GATTTAAAATATTTAAAAAA
Found at i:73208525 original size:21 final size:21
Alignment explanation
Indices: 73208501--73208543 Score: 86
Period size: 21 Copynumber: 2.0 Consensus size: 21
73208491 AAAGTTAGAT
73208501 TTAGGTAAATTGCTTAACCGA
1 TTAGGTAAATTGCTTAACCGA
73208522 TTAGGTAAATTGCTTAACCGA
1 TTAGGTAAATTGCTTAACCGA
73208543 T
1 T
73208544 ATATGCATGA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.33, C:0.14, G:0.19, T:0.35
Consensus pattern (21 bp):
TTAGGTAAATTGCTTAACCGA
Found at i:73212602 original size:20 final size:20
Alignment explanation
Indices: 73212565--73212604 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
73212555 TTGCTTCTTC
*
73212565 TTTACTTACTCTCTTACTTG
1 TTTACTTACTCTCCTACTTG
73212585 TTTACTTACT-TGCCTACTTG
1 TTTACTTACTCT-CCTACTTG
73212605 AATAACTCAT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 1 0.06
20 17 0.94
ACGTcount: A:0.15, C:0.25, G:0.07, T:0.53
Consensus pattern (20 bp):
TTTACTTACTCTCCTACTTG
Found at i:73212955 original size:50 final size:50
Alignment explanation
Indices: 73212894--73213002 Score: 148
Period size: 50 Copynumber: 2.2 Consensus size: 50
73212884 ACATGGCAGT
* * * * *
73212894 TCTCATATCGGTGCCCATGCTATGTCTCAGACATGGTCTTATAG-GGGACC
1 TCTCATCTCGGTGCCAACGCCATGTCCCAGACATGGTCTTA-AGTGGGACC
*
73212944 TCTCATCTCGGTGCCAACGCCATGTCCCAGACATGGTCTTACGTGGGACC
1 TCTCATCTCGGTGCCAACGCCATGTCCCAGACATGGTCTTAAGTGGGACC
73212994 TCTCATCTC
1 TCTCATCTC
73213003 CTCAATAATG
Statistics
Matches: 52, Mismatches: 6, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
49 1 0.02
50 51 0.98
ACGTcount: A:0.18, C:0.31, G:0.22, T:0.28
Consensus pattern (50 bp):
TCTCATCTCGGTGCCAACGCCATGTCCCAGACATGGTCTTAAGTGGGACC
Found at i:73224541 original size:50 final size:50
Alignment explanation
Indices: 73224489--73224817 Score: 392
Period size: 50 Copynumber: 6.5 Consensus size: 50
73224479 CATCCCAAAT
** * * ** *
73224489 ATGGTCTTACATGGGAGTTCTCATATAGGTGCCCATGCCATGTCCCAGAT
1 ATGGTCTTACATGGGACCTCTCATCTAGGTGCCAACACCATGTCCCAGAC
** * * *
73224539 ATGGTCTTACGGGGGAACTCTCATCTCGGTGCCAACACTATGTCCCAGAC
1 ATGGTCTTACATGGGACCTCTCATCTAGGTGCCAACACCATGTCCCAGAC
*
73224589 ATGGTCTTACATGGGACCTCTCATCTTGGTGCCAACACCATGTCCCAGAC
1 ATGGTCTTACATGGGACCTCTCATCTAGGTGCCAACACCATGTCCCAGAC
*
73224639 ATGGTCTTACATGGGACCTCTCATCTTGGTGCCAACACCATGTCCCAGAC
1 ATGGTCTTACATGGGACCTCTCATCTAGGTGCCAACACCATGTCCCAGAC
* * * *
73224689 ATGGTCTTACATGGGACCTCTCATCTCGGTGCCAACGCCAAGTCCCAAAC
1 ATGGTCTTACATGGGACCTCTCATCTAGGTGCCAACACCATGTCCCAGAC
* **
73224739 ATGGTCTTACATGGGACCTCTCATAATCTCAATGATGCCAATGCCATGTCCCAGAC
1 ATGGTCTTACATGGGACCTCTC---ATCT--A-GGTGCCAACACCATGTCCCAGAC
*
73224795 ATGGTCTTACAAGGGA--TCTCATC
1 ATGGTCTTACATGGGACCTCTCATC
73224818 CTCTTAATGT
Statistics
Matches: 247, Mismatches: 26, Indels: 11
0.87 0.09 0.04
Matches are distributed among these distances:
50 202 0.82
51 3 0.01
53 4 0.02
54 4 0.02
56 34 0.14
ACGTcount: A:0.23, C:0.29, G:0.21, T:0.26
Consensus pattern (50 bp):
ATGGTCTTACATGGGACCTCTCATCTAGGTGCCAACACCATGTCCCAGAC
Found at i:73230904 original size:50 final size:50
Alignment explanation
Indices: 73230732--73231205 Score: 378
Period size: 50 Copynumber: 9.5 Consensus size: 50
73230722 CTGGGAAAGT
* * * *
73230732 AAGATTCCCCGTTGTGGCTTTAGTCTTTTTAACTGCAATGTTGGGGAAAC
1 AAGATTCGCCGTTGTGGCTTTAATCTTTTTAACTGCAATGTCGGGGAAGC
* * * * * ** ** * * *
73230782 AAGGTTCGCCGCTATGGCGTTAATCTATTCCACTGCACCG-CTTGAGAAGT
1 AAGATTCGCCGTTGTGGCTTTAATCTTTTTAACTGCAATGTC-GGGGAAGC
* *
73230832 AAG--TCGCTGTTGTAGCTTTAATCTTTTTAACTGCAATGTCGGGGAAGC
1 AAGATTCGCCGTTGTGGCTTTAATCTTTTTAACTGCAATGTCGGGGAAGC
* * * ** ** * * *
73230880 AAGATTCACCGATGTGGCTTTAATCTGTTCCACTGCACCGCCAGGGAAGT
1 AAGATTCGCCGTTGTGGCTTTAATCTTTTTAACTGCAATGTCGGGGAAGC
* * *
73230930 AACATTCGCTGTTGTAGCTTTAATCTTTTTAACTGCAATGTCGGGGAAGC
1 AAGATTCGCCGTTGTGGCTTTAATCTTTTTAACTGCAATGTCGGGGAAGC
* * * ** ** * * *
73230980 AAGATTCACCGATGTGGCTTTAATCTGTTCCACTGCACCGCCAGGGAAGT
1 AAGATTCGCCGTTGTGGCTTTAATCTTTTTAACTGCAATGTCGGGGAAGC
* * *
73231030 AACATTCGCTGTTGTAGCTTTAATCTTTTTAACTGCAATGTCGGGGAAGC
1 AAGATTCGCCGTTGTGGCTTTAATCTTTTTAACTGCAATGTCGGGGAAGC
* * * ** ** * * *
73231080 AAGATTCACCGATGTGGCTTTAATCTGTTCCACTGCACCGCCAGGGAAGT
1 AAGATTCGCCGTTGTGGCTTTAATCTTTTTAACTGCAATGTCGGGGAAGC
* * *
73231130 AACATTCGCTGTTGTAGCTTTAATCTTTTTAACTGCAATGTCGGGGAAGC
1 AAGATTCGCCGTTGTGGCTTTAATCTTTTTAACTGCAATGTCGGGGAAGC
* * *
73231180 AAGATTCACCGATGTGGTTTTAATCT
1 AAGATTCGCCGTTGTGGCTTTAATCT
73231206 GTTCCACTGT
Statistics
Matches: 308, Mismatches: 112, Indels: 8
0.72 0.26 0.02
Matches are distributed among these distances:
48 33 0.11
49 1 0.00
50 274 0.89
ACGTcount: A:0.24, C:0.21, G:0.23, T:0.32
Consensus pattern (50 bp):
AAGATTCGCCGTTGTGGCTTTAATCTTTTTAACTGCAATGTCGGGGAAGC
Found at i:73230968 original size:100 final size:100
Alignment explanation
Indices: 73230697--73231214 Score: 824
Period size: 100 Copynumber: 5.2 Consensus size: 100
73230687 TGCTGTTGTA
* * * * * * * *
73230697 GCTTCAATCTGTTCCACTGCACCACCTGGGAAAGTAAGATTCCCCGTTGTGGCTTTAGTCTTTTT
1 GCTTTAATCTGTTCCACTGCACCGCCAGGG-AAGTAACATTCGCTGTTGTAGCTTTAATCTTTTT
* * * * * *
73230762 AACTGCAATGTTGGGGAAACAAGGTTCGCCGCTATG
65 AACTGCAATGTCGGGGAAGCAAGATTCACCGATGTG
* * ** * *
73230798 GCGTTAATCTATTCCACTGCACCGCTTGAGAAGT-A-AGTCGCTGTTGTAGCTTTAATCTTTTTA
1 GCTTTAATCTGTTCCACTGCACCGCCAGGGAAGTAACATTCGCTGTTGTAGCTTTAATCTTTTTA
73230861 ACTGCAATGTCGGGGAAGCAAGATTCACCGATGTG
66 ACTGCAATGTCGGGGAAGCAAGATTCACCGATGTG
73230896 GCTTTAATCTGTTCCACTGCACCGCCAGGGAAGTAACATTCGCTGTTGTAGCTTTAATCTTTTTA
1 GCTTTAATCTGTTCCACTGCACCGCCAGGGAAGTAACATTCGCTGTTGTAGCTTTAATCTTTTTA
73230961 ACTGCAATGTCGGGGAAGCAAGATTCACCGATGTG
66 ACTGCAATGTCGGGGAAGCAAGATTCACCGATGTG
73230996 GCTTTAATCTGTTCCACTGCACCGCCAGGGAAGTAACATTCGCTGTTGTAGCTTTAATCTTTTTA
1 GCTTTAATCTGTTCCACTGCACCGCCAGGGAAGTAACATTCGCTGTTGTAGCTTTAATCTTTTTA
73231061 ACTGCAATGTCGGGGAAGCAAGATTCACCGATGTG
66 ACTGCAATGTCGGGGAAGCAAGATTCACCGATGTG
73231096 GCTTTAATCTGTTCCACTGCACCGCCAGGGAAGTAACATTCGCTGTTGTAGCTTTAATCTTTTTA
1 GCTTTAATCTGTTCCACTGCACCGCCAGGGAAGTAACATTCGCTGTTGTAGCTTTAATCTTTTTA
73231161 ACTGCAATGTCGGGGAAGCAAGATTCACCGATGTG
66 ACTGCAATGTCGGGGAAGCAAGATTCACCGATGTG
*
73231196 GTTTTAATCTGTTCCACTG
1 GCTTTAATCTGTTCCACTG
73231215 TAATCTCAGA
Statistics
Matches: 391, Mismatches: 24, Indels: 5
0.93 0.06 0.01
Matches are distributed among these distances:
98 81 0.21
99 2 0.01
100 284 0.73
101 24 0.06
ACGTcount: A:0.23, C:0.22, G:0.23, T:0.32
Consensus pattern (100 bp):
GCTTTAATCTGTTCCACTGCACCGCCAGGGAAGTAACATTCGCTGTTGTAGCTTTAATCTTTTTA
ACTGCAATGTCGGGGAAGCAAGATTCACCGATGTG
Found at i:73232515 original size:13 final size:13
Alignment explanation
Indices: 73232497--73232532 Score: 56
Period size: 13 Copynumber: 2.8 Consensus size: 13
73232487 TTAGCCTCTC
73232497 CATTTTT-ACTTTT
1 CATTTTTCA-TTTT
73232510 CATTTTTCATTTT
1 CATTTTTCATTTT
73232523 CATTTTTCAT
1 CATTTTTCAT
73232533 CTCTTTTTTC
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
13 21 0.95
14 1 0.05
ACGTcount: A:0.17, C:0.17, G:0.00, T:0.67
Consensus pattern (13 bp):
CATTTTTCATTTT
Found at i:73232562 original size:14 final size:14
Alignment explanation
Indices: 73232543--73232580 Score: 58
Period size: 14 Copynumber: 2.6 Consensus size: 14
73232533 CTCTTTTTTC
73232543 TTTTTCAATATATT
1 TTTTTCAATATATT
*
73232557 TTTTTCAATATTTT
1 TTTTTCAATATATT
73232571 TTTTTGCAAT
1 TTTTT-CAAT
73232581 TCATTGTCTT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
14 18 0.82
15 4 0.18
ACGTcount: A:0.24, C:0.08, G:0.03, T:0.66
Consensus pattern (14 bp):
TTTTTCAATATATT
Found at i:73238570 original size:198 final size:196
Alignment explanation
Indices: 73238166--73238541 Score: 504
Period size: 198 Copynumber: 1.9 Consensus size: 196
73238156 GTCCACGACC
* * * * ** * *
73238166 CACAACAAACGGGTAGTCCTATACATGCCATTTCGAAGTTCAACCAAAATTGTACCAAAAGGGGG
1 CACAAC-AACGGGTAGTCCTAAACATGCCATATCAAAATTCAACCAAAAGAGTACCAAAAGGAGC
*
73238231 CTTTGATAGTGTGGGCTACATTGACCTCAAGATCCCGAGTCCAATAGCTGGAGAACCAAATCTAT
65 CTTTGATAGTGTGGGCGACATTGACCTCAAGATCCCGAGTCCAATAGCTGGAGAACCAAATCTAT
* * *
73238296 AAAACAGAGGAGCAATGAAACGGAGTAAGCAATTTATGCTTAGTAATACATCACATAAAGTACTT
130 AAAACAGAGGAGCAATGAAACGAAGTAAGCAATTTATGCTTAGTAATACATCAC--AAAGGAATT
*
73238361 GAAA
193 CAAA
* * *
73238365 AACAACAATGGGTCGTCCTAAACATGCCATATCAAAATTCAACCAAAAGAGTACCCAAAA-GAGC
1 CACAACAACGGGTAGTCCTAAACATGCCATATCAAAATTCAACCAAAAGAGTA-CCAAAAGGAGC
* *
73238429 CTTTGATAGTGTGGGCGAC-TTCGACTTCAAGATCCCGAGTCCGATAGCTGGAGAACCAAAAATC
65 CTTTGATAGTGTGGGCGACATT-GACCTCAAGATCCCGAGTCCAATAGCTGGAGAACC--AAATC
*
73238493 TATAAAACAGAGGAGCAATGGAACGAAGTAAGCAATTTATGCTTAGTAA
127 TATAAAACAGAGGAGCAATGAAACGAAGTAAGCAATTTATGCTTAGTAA
73238542 GTTTTGAGCA
Statistics
Matches: 157, Mismatches: 16, Indels: 7
0.87 0.09 0.04
Matches are distributed among these distances:
197 2 0.01
198 92 0.59
199 11 0.07
200 52 0.33
ACGTcount: A:0.38, C:0.20, G:0.20, T:0.22
Consensus pattern (196 bp):
CACAACAACGGGTAGTCCTAAACATGCCATATCAAAATTCAACCAAAAGAGTACCAAAAGGAGCC
TTTGATAGTGTGGGCGACATTGACCTCAAGATCCCGAGTCCAATAGCTGGAGAACCAAATCTATA
AAACAGAGGAGCAATGAAACGAAGTAAGCAATTTATGCTTAGTAATACATCACAAAGGAATTCAA
A
Found at i:73238825 original size:44 final size:44
Alignment explanation
Indices: 73238753--73238838 Score: 145
Period size: 44 Copynumber: 2.0 Consensus size: 44
73238743 TCAAGCACAT
* * *
73238753 ACGAAACATTCCTCAATGTGGGGGTGTTTCGAGAGTATTAACGG
1 ACGAAACATACCTCAATGTCGGGATGTTTCGAGAGTATTAACGG
73238797 ACGAAACATACCTCAATGTCGGGATGTTTCGAGAGTATTAAC
1 ACGAAACATACCTCAATGTCGGGATGTTTCGAGAGTATTAAC
73238839 TGGAATTTTA
Statistics
Matches: 39, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
44 39 1.00
ACGTcount: A:0.30, C:0.17, G:0.26, T:0.27
Consensus pattern (44 bp):
ACGAAACATACCTCAATGTCGGGATGTTTCGAGAGTATTAACGG
Found at i:73238956 original size:40 final size:40
Alignment explanation
Indices: 73238912--73239266 Score: 667
Period size: 40 Copynumber: 8.9 Consensus size: 40
73238902 GCTCCTCGGT
* * *
73238912 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAATTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA
73238952 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
73238992 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
73239032 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
73239072 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
73239112 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
73239152 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
73239192 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
73239232 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAAC
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAAC
73239267 ACATAGAGCA
Statistics
Matches: 311, Mismatches: 3, Indels: 2
0.98 0.01 0.01
Matches are distributed among these distances:
40 309 0.99
41 2 0.01
ACGTcount: A:0.28, C:0.27, G:0.20, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:73247678 original size:43 final size:42
Alignment explanation
Indices: 73247624--73247737 Score: 124
Period size: 43 Copynumber: 2.7 Consensus size: 42
73247614 TGTGATTGCA
*
73247624 TGTAAGA-CATGTCTGGGACATTGGCATTGTATTAA-GATTTCG
1 TGTAAGACCATGTCTGGGACATTGGCATCG--TTAACGATTTCG
** * *
73247666 TGTAAGACCATGTCTAAGACATTAGCATCGTTAATCGGTTTCG
1 TGTAAGACCATGTCTGGGACATTGGCATCGTTAA-CGATTTCG
* *
73247709 TGTAAGACCCTGTCTGGGACAGTGGCATC
1 TGTAAGACCATGTCTGGGACATTGGCATC
73247738 CATATGTAAT
Statistics
Matches: 59, Mismatches: 10, Indels: 5
0.80 0.14 0.07
Matches are distributed among these distances:
41 4 0.07
42 7 0.12
43 48 0.81
ACGTcount: A:0.25, C:0.18, G:0.25, T:0.32
Consensus pattern (42 bp):
TGTAAGACCATGTCTGGGACATTGGCATCGTTAACGATTTCG
Found at i:73257862 original size:30 final size:30
Alignment explanation
Indices: 73257826--73257886 Score: 95
Period size: 30 Copynumber: 2.0 Consensus size: 30
73257816 TCCTTAACTC
73257826 AAACTTTTTCAAAATTACAATTTTGCCCCT
1 AAACTTTTTCAAAATTACAATTTTGCCCCT
* * *
73257856 AAACTTTTTCATATTTACACTTTTGCCCCT
1 AAACTTTTTCAAAATTACAATTTTGCCCCT
73257886 A
1 A
73257887 GGCTCGGGAA
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.30, C:0.25, G:0.03, T:0.43
Consensus pattern (30 bp):
AAACTTTTTCAAAATTACAATTTTGCCCCT
Found at i:73263353 original size:28 final size:29
Alignment explanation
Indices: 73263289--73263354 Score: 71
Period size: 28 Copynumber: 2.3 Consensus size: 29
73263279 TTTTCATTTA
* * *
73263289 TTTCACAATTTAACCCCTCAATTTACACT
1 TTTCTCAAATTAACCCCTCAATTGACACT
* *
73263318 TTTCTCAAATTAATCCCT-AATTGACATT
1 TTTCTCAAATTAACCCCTCAATTGACACT
*
73263346 TTTGTCAAA
1 TTTCTCAAA
73263355 AATCACTTTA
Statistics
Matches: 31, Mismatches: 6, Indels: 1
0.82 0.16 0.03
Matches are distributed among these distances:
28 16 0.52
29 15 0.48
ACGTcount: A:0.32, C:0.24, G:0.03, T:0.41
Consensus pattern (29 bp):
TTTCTCAAATTAACCCCTCAATTGACACT
Found at i:73265138 original size:40 final size:40
Alignment explanation
Indices: 73265083--73265162 Score: 133
Period size: 40 Copynumber: 2.0 Consensus size: 40
73265073 TTATTCAACC
* * *
73265083 TAAAATACATGGAAACTCTAGGAGAGAGAGAAGGAACTTT
1 TAAAATACATGGAAACCCTAGGAGAGAGAAAAGAAACTTT
73265123 TAAAATACATGGAAACCCTAGGAGAGAGAAAAGAAACTTT
1 TAAAATACATGGAAACCCTAGGAGAGAGAAAAGAAACTTT
73265163 CATGGCTTAA
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
40 37 1.00
ACGTcount: A:0.47, C:0.11, G:0.23, T:0.19
Consensus pattern (40 bp):
TAAAATACATGGAAACCCTAGGAGAGAGAAAAGAAACTTT
Found at i:73269392 original size:28 final size:28
Alignment explanation
Indices: 73269326--73269453 Score: 175
Period size: 28 Copynumber: 4.5 Consensus size: 28
73269316 CATGAGATTG
* * **
73269326 GCACTAAGTGTGCGGGTTTAAATTGCATA
1 GCACTAAGTGTGCGAGTTT-GATTATATA
*
73269355 GCACTAAGTGTGCAAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
73269383 GCACTAAGTGTGCGAGTTTGATTATGTAA
1 GCACTAAGTGTGCGAGTTTGATTATAT-A
73269412 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
73269440 ACACTAAGTGTGCG
1 GCACTAAGTGTGCG
73269454 GACTTACTAT
Statistics
Matches: 89, Mismatches: 9, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
28 45 0.51
29 44 0.49
ACGTcount: A:0.29, C:0.12, G:0.26, T:0.33
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:73269415 original size:57 final size:57
Alignment explanation
Indices: 73269326--73269453 Score: 186
Period size: 57 Copynumber: 2.2 Consensus size: 57
73269316 CATGAGATTG
*
73269326 GCACTAAGTGTGCGGGTTTAAATTGCATAGCACTAAGTGTGCAAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTAAATTGCATAGCACTAAGTGTGCAAGTTTGATTATATA
* * * *
73269383 GCACTAAGTGTGCGAGTTTGATTATGTA-AGCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTAAAT-TGCATAGCACTAAGTGTGCAAGTTTGATTATATA
*
73269440 ACACTAAGTGTGCG
1 GCACTAAGTGTGCG
73269454 GACTTACTAT
Statistics
Matches: 64, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
57 61 0.95
58 3 0.05
ACGTcount: A:0.29, C:0.12, G:0.26, T:0.33
Consensus pattern (57 bp):
GCACTAAGTGTGCGAGTTTAAATTGCATAGCACTAAGTGTGCAAGTTTGATTATATA
Found at i:73272929 original size:45 final size:43
Alignment explanation
Indices: 73272760--73272926 Score: 139
Period size: 45 Copynumber: 3.9 Consensus size: 43
73272750 ATATCATACA
* * * * *
73272760 ATGCCAACGTCCCAGATGTGGTCTTACATGCTATCTC-ATATCG
1 ATGCCAACGTCCCAGACGTGGTCTTACACG-AAACACAATATCG
* *
73272803 ATGCC-ACTGTCCCAAACAG-GGTCTTATAC-AAATCA-AATAT-G
1 ATGCCAAC-GTCCCAGAC-GTGGTCTTACACGAAA-CACAATATCG
* * *
73272844 ATGCCAATGTCCCAGACATGGTCTTACACGTAACCACATATATCG
1 ATGCCAACGTCCCAGACGTGGTCTTACACG-AAACACA-ATATCG
73272889 ATGCCAACGTCCCAGACGTGGTCTTACACGAGAACACA
1 ATGCCAACGTCCCAGACGTGGTCTTACACGA-AACACA
73272927 TATTAGAAAT
Statistics
Matches: 97, Mismatches: 15, Indels: 22
0.72 0.11 0.16
Matches are distributed among these distances:
41 24 0.25
42 10 0.10
43 23 0.24
44 6 0.06
45 34 0.35
ACGTcount: A:0.31, C:0.28, G:0.17, T:0.24
Consensus pattern (43 bp):
ATGCCAACGTCCCAGACGTGGTCTTACACGAAACACAATATCG
Found at i:73278897 original size:46 final size:46
Alignment explanation
Indices: 73278830--73278995 Score: 178
Period size: 46 Copynumber: 3.6 Consensus size: 46
73278820 CGAACTCGTT
*
73278830 TCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAAC
1 TCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGTCCGAAC
* * * * *
73278876 TCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCATCCAAAC
1 TCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--A--CGTCCGAAC
* * *
73278923 TCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAACG-CTCGAGC
1 TCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGTC-CGAAC
73278969 TCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCGTTGAGTTGAGTCCGAGTTCACTTA
73278996 GGGGCGGGTT
Statistics
Matches: 98, Mismatches: 14, Indels: 16
0.77 0.11 0.12
Matches are distributed among these distances:
43 6 0.06
45 4 0.04
46 52 0.53
47 28 0.29
48 3 0.03
50 5 0.05
ACGTcount: A:0.22, C:0.19, G:0.28, T:0.31
Consensus pattern (46 bp):
TCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGTCCGAAC
Found at i:73279256 original size:19 final size:20
Alignment explanation
Indices: 73279219--73279256 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
73279209 ATAAGGTGGT
73279219 AAGATGATGAATGATGTTTA
1 AAGATGATGAATGATGTTTA
73279239 AAGATG-TGATAT-ATGTTT
1 AAGATGATGA-ATGATGTTT
73279257 TGGTGGTACC
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.37, C:0.00, G:0.24, T:0.39
Consensus pattern (20 bp):
AAGATGATGAATGATGTTTA
Found at i:73285779 original size:18 final size:18
Alignment explanation
Indices: 73285756--73285792 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
73285746 ATGATTATGG
*
73285756 ATGGGATAATTCGTTGAA
1 ATGGGATAATTAGTTGAA
*
73285774 ATGGGATTATTAGTTGAA
1 ATGGGATAATTAGTTGAA
73285792 A
1 A
73285793 AAAGATGCGA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.35, C:0.03, G:0.27, T:0.35
Consensus pattern (18 bp):
ATGGGATAATTAGTTGAA
Found at i:73286741 original size:46 final size:45
Alignment explanation
Indices: 73286684--73286774 Score: 173
Period size: 46 Copynumber: 2.0 Consensus size: 45
73286674 ATTTTTGTTG
73286684 TCGTGTGGTACTTAGAAAACATTTTGTTGTGTCCAGGAAAATGGT
1 TCGTGTGGTACTTAGAAAACATTTTGTTGTGTCCAGGAAAATGGT
73286729 TCGTGTAGGTACTTAGAAAACATTTTGTTGTGTCCAGGAAAATGGT
1 TCGTGT-GGTACTTAGAAAACATTTTGTTGTGTCCAGGAAAATGGT
73286775 GAAAATGTGC
Statistics
Matches: 45, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
45 6 0.13
46 39 0.87
ACGTcount: A:0.27, C:0.11, G:0.26, T:0.35
Consensus pattern (45 bp):
TCGTGTGGTACTTAGAAAACATTTTGTTGTGTCCAGGAAAATGGT
Found at i:73289927 original size:10 final size:10
Alignment explanation
Indices: 73289908--73289939 Score: 50
Period size: 9 Copynumber: 3.4 Consensus size: 10
73289898 ATGGAAGGGG
73289908 GAAA-AAAAA
1 GAAATAAAAA
73289917 GAAATAAAAA
1 GAAATAAAAA
73289927 GAAAT-AAAA
1 GAAATAAAAA
73289936 GAAA
1 GAAA
73289940 ATGAAAAGGA
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
9 12 0.55
10 10 0.45
ACGTcount: A:0.81, C:0.00, G:0.12, T:0.06
Consensus pattern (10 bp):
GAAATAAAAA
Found at i:73295037 original size:29 final size:29
Alignment explanation
Indices: 73294991--73295046 Score: 78
Period size: 28 Copynumber: 1.9 Consensus size: 29
73294981 TAAAATACTT
73294991 AAAAATATAAAAGGAATAAATA-AATACA
1 AAAAATATAAAAGGAATAAATACAATACA
**
73295019 AAAAATATAAAACTTAATAAATACAATA
1 AAAAATATAAAA-GGAATAAATACAATA
73295047 TGGAGGCTTA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
28 12 0.50
29 8 0.33
30 4 0.17
ACGTcount: A:0.70, C:0.05, G:0.04, T:0.21
Consensus pattern (29 bp):
AAAAATATAAAAGGAATAAATACAATACA
Found at i:73297299 original size:57 final size:57
Alignment explanation
Indices: 73297181--73297299 Score: 139
Period size: 57 Copynumber: 2.1 Consensus size: 57
73297171 GTTAGGTCAA
* * * * * * * *
73297181 ATCTTGTCTTTTTAATCCCTTGATACTTGTTTCCAGTTCTGCCCTTAATTTTTGCAT
1 ATCTTGCCTTCTTAATCCCTTGATACTTGCTGCCAGTTATGCCCTTAATCTTGGCAG
* * *
73297238 ATCTTGCCTTCTTAATCCCTTGATCCTTGCTGCCAGTTATGCCTTTGATCTTGGCAG
1 ATCTTGCCTTCTTAATCCCTTGATACTTGCTGCCAGTTATGCCCTTAATCTTGGCAG
73297295 ATCTT
1 ATCTT
73297300 TTGTTGTTTG
Statistics
Matches: 51, Mismatches: 11, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
57 51 1.00
ACGTcount: A:0.15, C:0.25, G:0.13, T:0.46
Consensus pattern (57 bp):
ATCTTGCCTTCTTAATCCCTTGATACTTGCTGCCAGTTATGCCCTTAATCTTGGCAG
Found at i:73301902 original size:31 final size:31
Alignment explanation
Indices: 73301862--73301931 Score: 131
Period size: 31 Copynumber: 2.2 Consensus size: 31
73301852 GAAGTTGTTT
73301862 TAAATTAAACTTTCTTATTGATATAAAACTCC
1 TAAA-TAAACTTTCTTATTGATATAAAACTCC
73301894 TAAATAAACTTTCTTATTGATATAAAACTCC
1 TAAATAAACTTTCTTATTGATATAAAACTCC
73301925 TAAATAA
1 TAAATAA
73301932 CTTAAACTAC
Statistics
Matches: 38, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
31 34 0.89
32 4 0.11
ACGTcount: A:0.44, C:0.14, G:0.03, T:0.39
Consensus pattern (31 bp):
TAAATAAACTTTCTTATTGATATAAAACTCC
Found at i:73304162 original size:51 final size:50
Alignment explanation
Indices: 73304107--73304247 Score: 212
Period size: 51 Copynumber: 2.8 Consensus size: 50
73304097 TTAATTTAAA
*
73304107 GATGCAAACTTTAACTAACATGTGAGTTACGTAATGCATGTCATTATTTAT
1 GATGCAAAC-TTAACTAACATGAGAGTTACGTAATGCATGTCATTATTTAT
* *
73304158 GATGCAAACTTAACTAATCATGAGAGTTGCATAATGCATGTCATTATTTAT
1 GATGCAAACTTAACTAA-CATGAGAGTTACGTAATGCATGTCATTATTTAT
*
73304209 GATGCATACTTAACTAACATGAGAGTTACAG-AATGCATG
1 GATGCAAACTTAACTAACATGAGAGTTAC-GTAATGCATG
73304248 ACTTTATTAA
Statistics
Matches: 82, Mismatches: 6, Indels: 5
0.88 0.06 0.05
Matches are distributed among these distances:
50 27 0.33
51 55 0.67
ACGTcount: A:0.35, C:0.14, G:0.17, T:0.33
Consensus pattern (50 bp):
GATGCAAACTTAACTAACATGAGAGTTACGTAATGCATGTCATTATTTAT
Found at i:73304255 original size:50 final size:50
Alignment explanation
Indices: 73304090--73304255 Score: 201
Period size: 51 Copynumber: 3.3 Consensus size: 50
73304080 GTTACTTAAC
* *
73304090 GCATGAC-TTAATTTAAAGATGCAAACTTTAACTAACATGTGAGTTAC-GTAAT
1 GCATGACATT-ATTT-ATGATGCAAAC-TTAACTAACATGAGAGTTACAG-AAT
* * *
73304142 GCATGTCATTATTTATGATGCAAACTTAACTAATCATGAGAGTTGCATAAT
1 GCATGACATTATTTATGATGCAAACTTAACTAA-CATGAGAGTTACAGAAT
* *
73304193 GCATGTCATTATTTATGATGCATACTTAACTAACATGAGAGTTACAGAAT
1 GCATGACATTATTTATGATGCAAACTTAACTAACATGAGAGTTACAGAAT
*
73304243 GCATGACTTTATT
1 GCATGACATTATT
73304256 AAATGTAGAA
Statistics
Matches: 101, Mismatches: 10, Indels: 8
0.85 0.08 0.07
Matches are distributed among these distances:
50 34 0.34
51 55 0.54
52 10 0.10
53 2 0.02
ACGTcount: A:0.36, C:0.14, G:0.16, T:0.35
Consensus pattern (50 bp):
GCATGACATTATTTATGATGCAAACTTAACTAACATGAGAGTTACAGAAT
Found at i:73306921 original size:100 final size:100
Alignment explanation
Indices: 73306748--73307033 Score: 545
Period size: 100 Copynumber: 2.9 Consensus size: 100
73306738 GTTGACTGTC
* *
73306748 GTCGTGGTGTTGCTCTGTGAAACTTTAAAGCCATCAATATTGTCTTATCTTATATCCACCATGAT
1 GTCGTGGTGTTGCTCTGTGGAACCTTAAAGCCATCAATATTGTCTTATCTTATATCCACCATGAT
73306813 GCTCGAACACCAAAGTGCCCCCTATAAGGACTATT
66 GCTCGAACACCAAAGTGCCCCCTATAAGGACTATT
73306848 GTCGTGGTGTTGCTCTGTGGAACCTTAAAGCCATCAATATTGTCTTATCTTATATCCACCATGAT
1 GTCGTGGTGTTGCTCTGTGGAACCTTAAAGCCATCAATATTGTCTTATCTTATATCCACCATGAT
73306913 GCTCGAACACCAAAGTGCCCCCTATAAGGACTATT
66 GCTCGAACACCAAAGTGCCCCCTATAAGGACTATT
*
73306948 GTCGTGGTGTTGCTCTGTGGAACCTTAAAGCCATCAATATTGTCTTATCTTATATCCACTATGAT
1 GTCGTGGTGTTGCTCTGTGGAACCTTAAAGCCATCAATATTGTCTTATCTTATATCCACCATGAT
73307013 GCTCGAACACCAAAGTGCCCC
66 GCTCGAACACCAAAGTGCCCC
73307034 TTGCAAGGCC
Statistics
Matches: 183, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
100 183 1.00
ACGTcount: A:0.26, C:0.25, G:0.18, T:0.31
Consensus pattern (100 bp):
GTCGTGGTGTTGCTCTGTGGAACCTTAAAGCCATCAATATTGTCTTATCTTATATCCACCATGAT
GCTCGAACACCAAAGTGCCCCCTATAAGGACTATT
Found at i:73315622 original size:42 final size:42
Alignment explanation
Indices: 73315558--73315641 Score: 150
Period size: 42 Copynumber: 2.0 Consensus size: 42
73315548 TAATCAGCGT
*
73315558 CTGAAACCACAAATTTAGATGATAAATATATATTTAAAAATA
1 CTGAAACCACAAATTTAAATGATAAATATATATTTAAAAATA
*
73315600 CTGAAACCATAAATTTAAATGATAAATATATATTTAAAAATA
1 CTGAAACCACAAATTTAAATGATAAATATATATTTAAAAATA
73315642 AAATAAAATA
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
42 40 1.00
ACGTcount: A:0.54, C:0.08, G:0.06, T:0.32
Consensus pattern (42 bp):
CTGAAACCACAAATTTAAATGATAAATATATATTTAAAAATA
Found at i:73315645 original size:19 final size:19
Alignment explanation
Indices: 73315581--73315646 Score: 53
Period size: 19 Copynumber: 3.3 Consensus size: 19
73315571 TTTAGATGAT
73315581 AAATATATATTTAAAAATA
1 AAATATATATTTAAAAATA
* * *
73315600 CTGAAACCATAAATTTAAATGAT-
1 ---AAA-TATATATTTAAA-AATA
73315623 AAATATATATTTAAAAATA
1 AAATATATATTTAAAAATA
73315642 AAATA
1 AAATA
73315647 AAATAAATAA
Statistics
Matches: 35, Mismatches: 6, Indels: 9
0.70 0.12 0.18
Matches are distributed among these distances:
18 2 0.06
19 15 0.43
20 3 0.09
22 3 0.09
23 10 0.29
24 2 0.06
ACGTcount: A:0.59, C:0.05, G:0.03, T:0.33
Consensus pattern (19 bp):
AAATATATATTTAAAAATA
Found at i:73316010 original size:20 final size:20
Alignment explanation
Indices: 73315981--73316021 Score: 73
Period size: 20 Copynumber: 2.0 Consensus size: 20
73315971 TGAATCTCAC
73315981 TATATACATATTTTCTTGAT
1 TATATACATATTTTCTTGAT
*
73316001 TATATGCATATTTTCTTGAT
1 TATATACATATTTTCTTGAT
73316021 T
1 T
73316022 TTTGTTAAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.27, C:0.10, G:0.07, T:0.56
Consensus pattern (20 bp):
TATATACATATTTTCTTGAT
Found at i:73318938 original size:43 final size:42
Alignment explanation
Indices: 73318783--73318939 Score: 120
Period size: 43 Copynumber: 3.7 Consensus size: 42
73318773 TGTGTTTTCT
* *
73318783 TGTAAGACCACTTCTGGGACGTTGGCGTCGAT-TTATGACTTACG
1 TGTAAGACCACGTCTGGGACGTTGGCATC-ATATT-TGA-TTACG
* * * * * **
73318827 TGTGAGACCATGTCTGGGACATCGGCATCGTATTTGATTTTG
1 TGTAAGACCACGTCTGGGACGTTGGCATCATATTTGATTACG
*** * * *
73318869 TGTAAGACCTTTTCTAGGATAG-TGGCATCAATATTTGATTACA
1 TGTAAGACCACGTCTGGGA-CGTTGGCATC-ATATTTGATTACG
73318912 TGTAAGACCACGTCTGGGACGTTGGCAT
1 TGTAAGACCACGTCTGGGACGTTGGCAT
73318940 TGTATGAGCT
Statistics
Matches: 84, Mismatches: 25, Indels: 9
0.71 0.21 0.08
Matches are distributed among these distances:
42 25 0.30
43 34 0.40
44 25 0.30
ACGTcount: A:0.23, C:0.18, G:0.26, T:0.33
Consensus pattern (42 bp):
TGTAAGACCACGTCTGGGACGTTGGCATCATATTTGATTACG
Found at i:73321562 original size:40 final size:39
Alignment explanation
Indices: 73321464--73321686 Score: 207
Period size: 40 Copynumber: 5.6 Consensus size: 39
73321454 TCCTCGTTCA
* * * * *
73321464 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACTC
1 AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
* *
73321503 AATGCCTTCGGGACATAACCCGGATTTAATAACTCGCAC
1 AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
*
73321542 GAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCAC
1 -AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
* * *
73321582 AAAGGCCTTCGGGGCTTAACCCGGAATTT-GTATCTCGCAC
1 -AATGCCTTCGGGACTTAACCCGG-ATTTAGTAACTCGCAC
** * * * *
73321622 AAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCAC
1 -AATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCAC
* *
73321663 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
73321687 CAGCATTCAA
Statistics
Matches: 156, Mismatches: 22, Indels: 11
0.83 0.12 0.06
Matches are distributed among these distances:
39 39 0.25
40 105 0.67
41 12 0.08
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (39 bp):
AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
Found at i:73321646 original size:80 final size:79
Alignment explanation
Indices: 73321462--73321686 Score: 231
Period size: 80 Copynumber: 2.8 Consensus size: 79
73321452 GCTCCTCGTT
* * * * * *
73321462 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACTCAATGCCTTCGGGACATAACCCGG-
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGT-ACTCGCACAAAGCCTTCGGGACTTAACCCGGA
73321526 ATTTAATAACTCGCA
65 ATTTAATAACTCGCA
* * *
73321541 CGAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACAAAGGCCTTCGGGGCTTAACCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTA-CTCGCACAAA-GCCTTCGGGACTTAACCCGG
* *
73321606 AATTT-GTATCTCGCA
64 AATTTAATAACTCGCA
* * * * *
73321621 CAAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCACAAAGCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGT-AC-TCGCACAAAGCCTTCGGGACTTAACCCG
73321685 GA
63 GA
73321687 CAGCATTCAA
Statistics
Matches: 121, Mismatches: 19, Indels: 11
0.80 0.13 0.07
Matches are distributed among these distances:
78 1 0.01
79 38 0.31
80 69 0.57
81 13 0.11
ACGTcount: A:0.25, C:0.28, G:0.21, T:0.26
Consensus pattern (79 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTACTCGCACAAAGCCTTCGGGACTTAACCCGGAA
TTTAATAACTCGCA
Found at i:73321695 original size:41 final size:41
Alignment explanation
Indices: 73321618--73321695 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
73321608 TTTGTATCTC
* * *
73321618 GCACAAATGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
73321659 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAATGCCTTC-GGATCTTAGCCCGGACA-CATTCA
73321696 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (41 bp):
GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:73322086 original size:109 final size:109
Alignment explanation
Indices: 73321890--73322102 Score: 374
Period size: 109 Copynumber: 2.0 Consensus size: 109
73321880 GATTCCGCTA
*
73321890 GCTATTCAACCACTTTTTCCTTCCCTTTATCGGATTTATTTCCCCTTTGCTCTTGAGCTTAATTA
1 GCTATTCAACCACTTTTTCCTTCCCTTTATCGGATTTAGTTCCCCTTTGCTCTTGAGCTTAATTA
*
73321955 AACAAATAAATTGATTTCATCATTT-AGGCATCAAAAAGATGATG
66 AACAAATAAATTGATTTAATCATTTGA-GCATCAAAAAGATGATG
*
73321999 GCTATTCGACCACTTTTTCCTTCCCTTTATCGGATTTAGTTCCCCTTTGCTCTTGAGCTTAATTA
1 GCTATTCAACCACTTTTTCCTTCCCTTTATCGGATTTAGTTCCCCTTTGCTCTTGAGCTTAATTA
*
73322064 AACAAATAAATTGATTTAATCATTTGAGCATCGAAAAGA
66 AACAAATAAATTGATTTAATCATTTGAGCATCAAAAAGA
73322103 GCAAGAACTT
Statistics
Matches: 99, Mismatches: 4, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
109 98 0.99
110 1 0.01
ACGTcount: A:0.28, C:0.21, G:0.12, T:0.39
Consensus pattern (109 bp):
GCTATTCAACCACTTTTTCCTTCCCTTTATCGGATTTAGTTCCCCTTTGCTCTTGAGCTTAATTA
AACAAATAAATTGATTTAATCATTTGAGCATCAAAAAGATGATG
Found at i:73328862 original size:27 final size:27
Alignment explanation
Indices: 73328789--73328902 Score: 106
Period size: 27 Copynumber: 4.2 Consensus size: 27
73328779 AGCATGGCTG
* * * *
73328789 CCAGAACAGATA-TTGTGACATAGTCA
1 CCAGAAAAGATATTTGTGGCGTAGCCA
* * *
73328815 CCAGATACAGATA-TTGCGGCGGAGCCA
1 CCAGA-AAAGATATTTGTGGCGTAGCCA
73328842 CCAGAAAAGATATTTGTGGCGTAGCCA
1 CCAGAAAAGATATTTGTGGCGTAGCCA
** *
73328869 TAAGAAATAGATATTTGTGGCATAGCCA
1 CCAGAAA-AGATATTTGTGGCGTAGCCA
73328897 CCAGAA
1 CCAGAA
73328903 CGCTTCCTCC
Statistics
Matches: 72, Mismatches: 13, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
26 11 0.15
27 38 0.53
28 23 0.32
ACGTcount: A:0.36, C:0.19, G:0.24, T:0.21
Consensus pattern (27 bp):
CCAGAAAAGATATTTGTGGCGTAGCCA
Found at i:73328889 original size:28 final size:27
Alignment explanation
Indices: 73328844--73328896 Score: 88
Period size: 28 Copynumber: 1.9 Consensus size: 27
73328834 CGGAGCCACC
*
73328844 AGAAAAGATATTTGTGGCGTAGCCATA
1 AGAAAAGATATTTGTGGCATAGCCATA
73328871 AGAAATAGATATTTGTGGCATAGCCA
1 AGAAA-AGATATTTGTGGCATAGCCA
73328897 CCAGAACGCT
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
27 5 0.21
28 19 0.79
ACGTcount: A:0.38, C:0.11, G:0.25, T:0.26
Consensus pattern (27 bp):
AGAAAAGATATTTGTGGCATAGCCATA
Found at i:73337176 original size:98 final size:98
Alignment explanation
Indices: 73337007--73337201 Score: 381
Period size: 98 Copynumber: 2.0 Consensus size: 98
73336997 AAAAATCTGT
73337007 ACATATATGGCATGACTCCTAATTATCTCTGGTTAATTTATAATGAATTTCCAAAGTCGGAACAG
1 ACATATATGGCATGACTCCTAATTATCTCTGGTTAATTTATAATGAATTTCCAAAGTCGGAACAG
*
73337072 GGAATCCAGAAACCGTTCTGGCCCTGTCTCACG
66 GGAATCCAGAAACCGTTCTGGCCCTATCTCACG
73337105 ACATATATGGCATGACTCCTAATTATCTCTGGTTAATTTATAATGAATTTCCAAAGTCGGAACAG
1 ACATATATGGCATGACTCCTAATTATCTCTGGTTAATTTATAATGAATTTCCAAAGTCGGAACAG
73337170 GGAATCCAGAAACCGTTCTGGCCCTATCTCAC
66 GGAATCCAGAAACCGTTCTGGCCCTATCTCAC
73337202 AAGAACCTGA
Statistics
Matches: 96, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
98 96 1.00
ACGTcount: A:0.30, C:0.23, G:0.17, T:0.30
Consensus pattern (98 bp):
ACATATATGGCATGACTCCTAATTATCTCTGGTTAATTTATAATGAATTTCCAAAGTCGGAACAG
GGAATCCAGAAACCGTTCTGGCCCTATCTCACG
Found at i:73338334 original size:28 final size:28
Alignment explanation
Indices: 73338271--73338424 Score: 220
Period size: 28 Copynumber: 5.5 Consensus size: 28
73338261 ATATTAAGTC
* *
73338271 CGCACACTCAGTGATATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
*
73338298 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
*
73338326 TGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
73338354 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
73338382 CGCACACTTAGTGCTGTACAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
73338411 CGCACACTTAGTGC
1 CGCACACTTAGTGC
73338425 CAATCTCATG
Statistics
Matches: 115, Mismatches: 10, Indels: 2
0.91 0.08 0.02
Matches are distributed among these distances:
27 20 0.17
28 76 0.66
29 19 0.17
ACGTcount: A:0.34, C:0.27, G:0.12, T:0.27
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:73346440 original size:27 final size:28
Alignment explanation
Indices: 73346410--73346504 Score: 113
Period size: 28 Copynumber: 3.4 Consensus size: 28
73346400 TTAAGTCCGT
*
73346410 ACACTCAGTGCTATATAATC-AACTCGC
1 ACACTTAGTGCTATATAATCAAACTCGC
73346437 ACACTTAGTGCTATATAATCAAACTCGC
1 ACACTTAGTGCTATATAATCAAACTCGC
* * * *
73346465 ACAATTAGTGCTGA-ACAATTTAAACCCGC
1 ACACTTAGTGCT-ATATAA-TCAAACTCGC
73346494 ACACTTAGTGC
1 ACACTTAGTGC
73346505 CAATCTCATG
Statistics
Matches: 59, Mismatches: 6, Indels: 4
0.86 0.09 0.06
Matches are distributed among these distances:
27 19 0.32
28 21 0.36
29 19 0.32
ACGTcount: A:0.35, C:0.26, G:0.13, T:0.26
Consensus pattern (28 bp):
ACACTTAGTGCTATATAATCAAACTCGC
Done.