Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr9
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 91122320
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2661692 characters in sequence are not A, C, G, or T
File 225 of 279
Found at i:73641034 original size:50 final size:50
Alignment explanation
Indices: 73640959--73641057 Score: 180
Period size: 50 Copynumber: 2.0 Consensus size: 50
73640949 AAGTTCATAA
* *
73640959 GTGTTTGGACTTGGAAATTTAAGAGCAAATTGTAATAATTTGTTTTGGAT
1 GTGTTCGGACTTGGAAATTTAAGAGCAAATTGTAATAATTTGCTTTGGAT
73641009 GTGTTCGGACTTGGAAATTTAAGAGCAAATTGTAATAATTTGCTTTGGA
1 GTGTTCGGACTTGGAAATTTAAGAGCAAATTGTAATAATTTGCTTTGGA
73641058 CAGCAGCAGT
Statistics
Matches: 47, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
50 47 1.00
ACGTcount: A:0.30, C:0.06, G:0.24, T:0.39
Consensus pattern (50 bp):
GTGTTCGGACTTGGAAATTTAAGAGCAAATTGTAATAATTTGCTTTGGAT
Found at i:73641263 original size:136 final size:136
Alignment explanation
Indices: 73641019--73641291 Score: 546
Period size: 136 Copynumber: 2.0 Consensus size: 136
73641009 GTGTTCGGAC
73641019 TTGGAAATTTAAGAGCAAATTGTAATAATTTGCTTTGGACAGCAGCAGTAACGTGATTTTAGAAA
1 TTGGAAATTTAAGAGCAAATTGTAATAATTTGCTTTGGACAGCAGCAGTAACGTGATTTTAGAAA
73641084 ATCACTATAAATTGTTGGTGTGGAATTATAGGCTGAATAAAATATGTAATCAAAGCTTATTTAGT
66 ATCACTATAAATTGTTGGTGTGGAATTATAGGCTGAATAAAATATGTAATCAAAGCTTATTTAGT
73641149 CTAGTT
131 CTAGTT
73641155 TTGGAAATTTAAGAGCAAATTGTAATAATTTGCTTTGGACAGCAGCAGTAACGTGATTTTAGAAA
1 TTGGAAATTTAAGAGCAAATTGTAATAATTTGCTTTGGACAGCAGCAGTAACGTGATTTTAGAAA
73641220 ATCACTATAAATTGTTGGTGTGGAATTATAGGCTGAATAAAATATGTAATCAAAGCTTATTTAGT
66 ATCACTATAAATTGTTGGTGTGGAATTATAGGCTGAATAAAATATGTAATCAAAGCTTATTTAGT
73641285 CTAGTT
131 CTAGTT
73641291 T
1 T
73641292 CTTATAAAAG
Statistics
Matches: 137, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
136 137 1.00
ACGTcount: A:0.36, C:0.09, G:0.20, T:0.36
Consensus pattern (136 bp):
TTGGAAATTTAAGAGCAAATTGTAATAATTTGCTTTGGACAGCAGCAGTAACGTGATTTTAGAAA
ATCACTATAAATTGTTGGTGTGGAATTATAGGCTGAATAAAATATGTAATCAAAGCTTATTTAGT
CTAGTT
Found at i:73642078 original size:22 final size:22
Alignment explanation
Indices: 73642051--73642177 Score: 60
Period size: 22 Copynumber: 5.3 Consensus size: 22
73642041 ATGTCTATAT
73642051 ATGTGATAAGGCTGAATGGCCA
1 ATGTGATAAGGCTGAATGGCCA
* ***
73642073 ATGTGATGAATG-TGAAAGTGTATATA
1 ATGTGAT-AAGGCTG-AA-TG--GCCA
73642099 TATGTGATAAGGCTGAATGGCCA
1 -ATGTGATAAGGCTGAATGGCCA
* ***
73642122 ATGTGATGAATG-TGAAAGTGTATATA
1 ATGTGAT-AAGGCTG-AA-TG--GCCA
73642148 TATGTGATAAGGCTGAATGGCCA
1 -ATGTGATAAGGCTGAATGGCCA
73642171 ATGTGAT
1 ATGTGAT
73642178 GAATGTGAAA
Statistics
Matches: 75, Mismatches: 16, Indels: 28
0.63 0.13 0.24
Matches are distributed among these distances:
22 25 0.33
23 12 0.16
24 4 0.05
25 4 0.05
26 12 0.16
27 18 0.24
ACGTcount: A:0.34, C:0.07, G:0.29, T:0.30
Consensus pattern (22 bp):
ATGTGATAAGGCTGAATGGCCA
Found at i:73642087 original size:47 final size:47
Alignment explanation
Indices: 73642035--73642395 Score: 501
Period size: 47 Copynumber: 7.6 Consensus size: 47
73642025 GATAATTGTG
* *
73642035 ATGTGAATGTCTATATATGTGATAAGGCTGAATGGCCAATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCTGAATGGCCAATGTGATGA
73642082 ATGTGAAAGTGTATATATATGTGATAAGGCTGAATGGCCAATGTGATGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCTGAATGGCCAATGTGATGA
73642131 ATGTGAAAGTGTATATATATGTGATAAGGCTGAATGGCCAATGTGATGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCTGAATGGCCAATGTGATGA
* *
73642180 ATGTGAAAGTGTATATATATGTGATAAGGCTTAATGGCCGATGTGATGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCTGAATGGCCAATGTGATGA
* *
73642229 ATGTGAAAGTGTATATATGTGATAAGGCCT-AATAGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGG-CTGAATGGCCAATGTGATGA
* *
73642276 ATGTGAAAGTGTATATATGTGATGAGGCCT-AATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGG-CTGAATGGCCAATGTGATGA
* * * * * *
73642323 ATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGG
1 ATGTGAAAGTGTATATATGTGATAAGGCTGAATGGCCAATGTGATGA
*
73642370 ATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGAAAGTGTATATATGTGATAAG
73642396 TCCCGAAGGG
Statistics
Matches: 292, Mismatches: 18, Indels: 8
0.92 0.06 0.03
Matches are distributed among these distances:
46 1 0.00
47 146 0.50
48 2 0.01
49 143 0.49
ACGTcount: A:0.33, C:0.07, G:0.30, T:0.30
Consensus pattern (47 bp):
ATGTGAAAGTGTATATATGTGATAAGGCTGAATGGCCAATGTGATGA
Found at i:73642099 original size:49 final size:49
Alignment explanation
Indices: 73642046--73642395 Score: 504
Period size: 49 Copynumber: 7.3 Consensus size: 49
73642036 TGTGAATGTC
73642046 TATATATGTGATAAGGCTGAATGGCCAATGTGATGAATGTGAAAGTGTA
1 TATATATGTGATAAGGCTGAATGGCCAATGTGATGAATGTGAAAGTGTA
73642095 TATATATGTGATAAGGCTGAATGGCCAATGTGATGAATGTGAAAGTGTA
1 TATATATGTGATAAGGCTGAATGGCCAATGTGATGAATGTGAAAGTGTA
73642144 TATATATGTGATAAGGCTGAATGGCCAATGTGATGAATGTGAAAGTGTA
1 TATATATGTGATAAGGCTGAATGGCCAATGTGATGAATGTGAAAGTGTA
* *
73642193 TATATATGTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTG--
1 TATATATGTGATAAGGCTGAATGGCCAATGTGATGAATGTGAAAGTGTA
* *
73642240 TATATATGTGATAAGGCCT-AATAGCCGATGTGATGAATGTGAAAGTG--
1 TATATATGTGATAAGG-CTGAATGGCCAATGTGATGAATGTGAAAGTGTA
* *
73642287 TATATATGTGATGAGGCCT-AATGGCCGATGTGATGAATGTGAAAGTG--
1 TATATATGTGATAAGG-CTGAATGGCCAATGTGATGAATGTGAAAGTGTA
* * * * * *
73642334 TATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTA
1 TATATATGTGATAAGGCTGAATGGCCAATGTGATGAATGTGAAAGTGTA
73642383 TA-A-ATGTGATAAG
1 TATATATGTGATAAG
73642396 TCCCGAAGGG
Statistics
Matches: 282, Mismatches: 15, Indels: 10
0.92 0.05 0.03
Matches are distributed among these distances:
46 1 0.00
47 133 0.47
48 3 0.01
49 145 0.51
ACGTcount: A:0.33, C:0.07, G:0.30, T:0.30
Consensus pattern (49 bp):
TATATATGTGATAAGGCTGAATGGCCAATGTGATGAATGTGAAAGTGTA
Found at i:73649185 original size:68 final size:66
Alignment explanation
Indices: 73649111--73649260 Score: 178
Period size: 67 Copynumber: 2.2 Consensus size: 66
73649101 CATCATGTGT
* * * *
73649111 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGTGATACTA-TG-TGTACACCA
1 ACAAGAGAGCTAC--GACA-TAT-ATGTAGCTAGGTCGCATGCGTGATACCAGTGAAGGACACCA
73649174 TGTAG
62 TGTAG
* * *
73649179 ACAAGAGAGCTACGAGATATATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAGGACACCATGT
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGATACCA-GTGAAGGACACCATGT
73649244 AG
65 AG
73649246 ACAAGAGAGCTACGA
1 ACAAGAGAGCTACGA
73649261 GATAAATTGG
Statistics
Matches: 72, Mismatches: 7, Indels: 7
0.84 0.08 0.08
Matches are distributed among these distances:
64 24 0.33
65 3 0.04
66 5 0.07
67 27 0.38
68 13 0.18
ACGTcount: A:0.33, C:0.17, G:0.29, T:0.21
Consensus pattern (66 bp):
ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGATACCAGTGAAGGACACCATGTA
G
Found at i:73656228 original size:45 final size:44
Alignment explanation
Indices: 73656154--73656330 Score: 196
Period size: 45 Copynumber: 4.0 Consensus size: 44
73656144 GAATCAAATA
* * * * *
73656154 CGATGCCAA-TTCCCAGACATGGTCTTACACATAACCATATATAT
1 CGATGCCAACGTCCCAGACGTAGTCTTACACA-AAACACATATAT
*
73656198 CGATGCCAACGTCCTAGACGTAGTCTTACACGAAAACACATATAT
1 CGATGCCAACGTCCCAGACGTAGTCTTACAC-AAAACACATATAT
* *
73656243 CGATGCCAACGTCCCAGACGTGGTCTTACATGAAAACACATATAT
1 CGATGCCAACGTCCCAGACGTAGTCTTACA-CAAAACACATATAT
* * *
73656288 CGATGCCAACGTTCCAAATGT-GATCTTACACCAAAACACATAT
1 CGATGCCAACGTCCCAGACGTAG-TCTTACA-CAAAACACATAT
73656331 CAGAATCCTA
Statistics
Matches: 115, Mismatches: 14, Indels: 7
0.85 0.10 0.05
Matches are distributed among these distances:
44 10 0.09
45 104 0.90
46 1 0.01
ACGTcount: A:0.35, C:0.27, G:0.14, T:0.24
Consensus pattern (44 bp):
CGATGCCAACGTCCCAGACGTAGTCTTACACAAAACACATATAT
Found at i:73656286 original size:90 final size:89
Alignment explanation
Indices: 73656154--73656330 Score: 225
Period size: 90 Copynumber: 2.0 Consensus size: 89
73656144 GAATCAAATA
* * * *
73656154 CGATGCCAATTCCCAGACATGGTCTTACACATAACCATATATATCGATGCCAACG-TCCTAGACG
1 CGATGCCAAGTCCCAGACATGGTCTTACACATAAACACATATATCGATGCCAACGTTCC-AAACG
*
73656218 T-AGTCTTACACGAAAACACATATAT
65 TGA-TCTTACACCAAAACACATATAT
* * *
73656243 CGATGCCAACGTCCCAGACGTGGTCTTACATGA-AAACACATATATCGATGCCAACGTTCCAAAT
1 CGATGCCAA-GTCCCAGACATGGTCTTACA-CATAAACACATATATCGATGCCAACGTTCCAAAC
73656307 GTGATCTTACACCAAAACACATAT
64 GTGATCTTACACCAAAACACATAT
73656331 CAGAATCCTA
Statistics
Matches: 76, Mismatches: 8, Indels: 7
0.84 0.09 0.08
Matches are distributed among these distances:
89 9 0.12
90 62 0.82
91 5 0.07
ACGTcount: A:0.35, C:0.27, G:0.14, T:0.24
Consensus pattern (89 bp):
CGATGCCAAGTCCCAGACATGGTCTTACACATAAACACATATATCGATGCCAACGTTCCAAACGT
GATCTTACACCAAAACACATATAT
Found at i:73656735 original size:15 final size:15
Alignment explanation
Indices: 73656712--73656742 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
73656702 TCAAAAATTC
73656712 CAATACAAAACATAT
1 CAATACAAAACATAT
*
73656727 CAATCCAAAACATAT
1 CAATACAAAACATAT
73656742 C
1 C
73656743 TTTCATATTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.55, C:0.26, G:0.00, T:0.19
Consensus pattern (15 bp):
CAATACAAAACATAT
Found at i:73657273 original size:14 final size:15
Alignment explanation
Indices: 73657256--73657284 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
73657246 TCACGAAAAT
73657256 TTCACACAT-ATAAA
1 TTCACACATAATAAA
73657270 TTCACACATAATAAA
1 TTCACACATAATAAA
73657285 CACAGAATAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 9 0.64
15 5 0.36
ACGTcount: A:0.52, C:0.21, G:0.00, T:0.28
Consensus pattern (15 bp):
TTCACACATAATAAA
Found at i:73668933 original size:24 final size:24
Alignment explanation
Indices: 73668901--73668948 Score: 78
Period size: 24 Copynumber: 2.0 Consensus size: 24
73668891 ACGACTTAGT
*
73668901 CTCGATTATTTGAGATGGTACTAA
1 CTCGATTATTTGAGATGGCACTAA
*
73668925 CTCGGTTATTTGAGATGGCACTAA
1 CTCGATTATTTGAGATGGCACTAA
73668949 GTGTGCGAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.27, C:0.15, G:0.23, T:0.35
Consensus pattern (24 bp):
CTCGATTATTTGAGATGGCACTAA
Found at i:73677599 original size:46 final size:46
Alignment explanation
Indices: 73677532--73677704 Score: 167
Period size: 46 Copynumber: 3.7 Consensus size: 46
73677522 TAACCCGCCC
73677532 ATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCT
1 ATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCT
* *
73677578 ATAAGTGAGCTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACG--T-T
1 ATAAGCGAACTCGGACTCAACTCAACGAGCTCGG--G-C--GTT-CGCATCT
* * * * *
73677627 -TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCC
1 ATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCT
* * *
73677671 ATAAGTGAACTCGGACTCAACTCAATGAGTTCGG
1 ATAAGCGAACTCGGACTCAACTCAACGAGCTCGG
73677705 ATGCTCAACC
Statistics
Matches: 104, Mismatches: 12, Indels: 22
0.75 0.09 0.16
Matches are distributed among these distances:
41 2 0.02
42 2 0.02
43 1 0.01
44 1 0.01
45 2 0.02
46 59 0.57
47 26 0.25
48 3 0.03
49 2 0.02
50 1 0.01
51 3 0.03
52 2 0.02
ACGTcount: A:0.28, C:0.28, G:0.23, T:0.22
Consensus pattern (46 bp):
ATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCT
Found at i:73677650 original size:93 final size:93
Alignment explanation
Indices: 73677537--73677708 Score: 281
Period size: 93 Copynumber: 1.8 Consensus size: 93
73677527 CGCCCATAAG
* * * *
73677537 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCTATAAGTGAGCTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
73677602 ACGAGCTCGGATGCCTAGTTACGTTTCA
66 ACGAGCTCGGATGCCTAGTTACGTTTCA
*
73677630 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
* *
73677695 ATGAGTTCGGATGC
66 ACGAGCTCGGATGC
73677709 TCAACCATCC
Statistics
Matches: 72, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.27, C:0.28, G:0.23, T:0.22
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGCTCGGATGCCTAGTTACGTTTCA
Found at i:73681254 original size:27 final size:28
Alignment explanation
Indices: 73681200--73681255 Score: 87
Period size: 27 Copynumber: 2.0 Consensus size: 28
73681190 CAAGGGAAAA
*
73681200 TTAAAATTTTGAAAACTGATCCAATATG
1 TTAAAATTTTGAAAACCGATCCAATATG
*
73681228 TTAAAATTTTG-AAACCGATCCAGTATG
1 TTAAAATTTTGAAAACCGATCCAATATG
73681255 T
1 T
73681256 GATATTCATA
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
27 15 0.58
28 11 0.42
ACGTcount: A:0.39, C:0.12, G:0.12, T:0.36
Consensus pattern (28 bp):
TTAAAATTTTGAAAACCGATCCAATATG
Found at i:73683285 original size:56 final size:56
Alignment explanation
Indices: 73683199--73683377 Score: 268
Period size: 56 Copynumber: 3.2 Consensus size: 56
73683189 CAATGGAATC
* * * * *
73683199 GATATATTTGTGCGAGTAAAACCACATTTAATACGTTGGCATCGATATGTGATTTT
1 GATATATGTGTGTGAGTAAGACCACGTTTAATATGTTGGCATCGATATGTGATTTT
* *
73683255 GATATATGTGTGTAAGTAAGACCACGTTTAATATGTTGGCATCGATATGTGATTTC
1 GATATATGTGTGTGAGTAAGACCACGTTTAATATGTTGGCATCGATATGTGATTTT
* *
73683311 GATATATGTGTGTGAGTAAGACCACGTTTATTATGTTGGCATCGATATGTGATTCT
1 GATATATGTGTGTGAGTAAGACCACGTTTAATATGTTGGCATCGATATGTGATTTT
*
73683367 GATTTATGTGT
1 GATATATGTGT
73683378 ACCAGTAAGA
Statistics
Matches: 111, Mismatches: 12, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
56 111 1.00
ACGTcount: A:0.27, C:0.11, G:0.23, T:0.39
Consensus pattern (56 bp):
GATATATGTGTGTGAGTAAGACCACGTTTAATATGTTGGCATCGATATGTGATTTT
Found at i:73683407 original size:112 final size:112
Alignment explanation
Indices: 73683197--73683420 Score: 261
Period size: 112 Copynumber: 2.0 Consensus size: 112
73683187 GACAATGGAA
* *
73683197 TCGATATATTTGTGCGAGTAAAACCACATTTAATACGTTGGCATCGATATGTGATTTTGATATAT
1 TCGATATATGTGTGCGAGTAAAACCACATTTAATACGTTGGCATCGATATGTGATTCTGATATAT
** * * *** *
73683262 GTGTGTAAGTAAGACCACGTTTAATATGTTGGCATCGATATGTGATT
66 GTGTACAAGTAAGACCACGTCTAAGACAATGGCATCAATATGTGATT
* * * * * *
73683309 TCGATATATGTGTGTGAGTAAGACCACGTTTATTATGTTGGCATCGATATGTGATTCTGATTTAT
1 TCGATATATGTGTGCGAGTAAAACCACATTTAATACGTTGGCATCGATATGTGATTCTGATATAT
* **
73683374 GTGTACCAGTAAGACC-CTGTCTGGGACAATGGCATCAATATGTGATT
66 GTGTACAAGTAAGACCAC-GTCTAAGACAATGGCATCAATATGTGATT
73683421 ACATGTAAGA
Statistics
Matches: 92, Mismatches: 19, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
111 1 0.01
112 91 0.99
ACGTcount: A:0.28, C:0.13, G:0.23, T:0.37
Consensus pattern (112 bp):
TCGATATATGTGTGCGAGTAAAACCACATTTAATACGTTGGCATCGATATGTGATTCTGATATAT
GTGTACAAGTAAGACCACGTCTAAGACAATGGCATCAATATGTGATT
Found at i:73692701 original size:27 final size:28
Alignment explanation
Indices: 73692617--73692714 Score: 135
Period size: 27 Copynumber: 3.5 Consensus size: 28
73692607 GTTGATTTCG
* * * *
73692617 GCACTAAGTGTGCGGGTTTAAATTGTACA
1 GCACTAAGTGTGCGAGTTT-GATTATATA
73692646 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
73692674 GCACTAAGTGTGCGAG-TTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
73692701 GCACTGAGTGTGCG
1 GCACTAAGTGTGCG
73692715 GACTTAATAT
Statistics
Matches: 64, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
27 24 0.38
28 22 0.34
29 18 0.28
ACGTcount: A:0.27, C:0.13, G:0.29, T:0.32
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:73692725 original size:27 final size:27
Alignment explanation
Indices: 73692645--73692727 Score: 96
Period size: 27 Copynumber: 3.0 Consensus size: 27
73692635 TAAATTGTAC
* *
73692645 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGA-CTTGAATATAT
* *
73692673 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGACTTGAATATAT
*
73692700 AGCACTGAGTGTGCGGACTT-AATATAT
1 AGCACTAAGTGTGC-GACTTGAATATAT
73692727 A
1 A
73692728 TTTTTGAATC
Statistics
Matches: 50, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
27 30 0.60
28 20 0.40
ACGTcount: A:0.30, C:0.12, G:0.25, T:0.33
Consensus pattern (27 bp):
AGCACTAAGTGTGCGACTTGAATATAT
Found at i:73692728 original size:29 final size:27
Alignment explanation
Indices: 73692617--73692728 Score: 98
Period size: 28 Copynumber: 4.0 Consensus size: 27
73692607 GTTGATTTCG
** * *
73692617 GCACTAAGTGTGCGGGTTTAAATTGTACA
1 GCACTAAGTGTGC-GACTT-AATTATATA
* *
73692646 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGA-CTTAATTATATA
* *
73692674 GCACTAAGTGTGCGAGTTGATTATATA
1 GCACTAAGTGTGCGACTTAATTATATA
*
73692701 GCACTGAGTGTGCGGACTTAATATATAT
1 GCACTAAGTGTGC-GACTTAAT-TATAT
73692729 TTTTGAATCA
Statistics
Matches: 72, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
27 23 0.32
28 28 0.39
29 21 0.29
ACGTcount: A:0.29, C:0.12, G:0.26, T:0.33
Consensus pattern (27 bp):
GCACTAAGTGTGCGACTTAATTATATA
Found at i:73698826 original size:79 final size:81
Alignment explanation
Indices: 73698684--73698866 Score: 221
Period size: 79 Copynumber: 2.3 Consensus size: 81
73698674 TACTCATTCA
* * *
73698684 AATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCTCACAAATGCCTTCGGGCCTTAACCCGGA
1 AATGCCTTCGGGACATAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGACCTTAACCCGGA
* * *
73698748 TTTAGTGACT-CGCACC
66 TATAGTCACTAAGCA-C
* * **
73698764 AATGCCTTCGGG-CCTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGGA
1 AATGCCTTCGGGACATAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGACCTTAACCCGGA
73698827 TATAGTCACTAAGCAC
66 TATAGTCACTAAGCAC
* *
73698843 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACATAGCCCGGA
73698867 CATCATTCGA
Statistics
Matches: 88, Mismatches: 12, Indels: 6
0.83 0.11 0.06
Matches are distributed among these distances:
79 62 0.70
80 26 0.30
ACGTcount: A:0.25, C:0.29, G:0.22, T:0.23
Consensus pattern (81 bp):
AATGCCTTCGGGACATAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGACCTTAACCCGGA
TATAGTCACTAAGCAC
Found at i:73698866 original size:40 final size:40
Alignment explanation
Indices: 73698682--73698866 Score: 207
Period size: 40 Copynumber: 4.7 Consensus size: 40
73698672 GCTACTCATT
* * *
73698682 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCTCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* * * *
73698722 CAAATGCCTTCGGGCCTTAACCCGGATTTAGTGACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* *
73698762 CCAATGCCTTCGGG-CCTAGCCCGGA-ATTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCA
* * *
73698801 CAAATGCCTTC-GGATCTTAGTCCGGATATAGTCACTAAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATATAGTAACT-CGCA
73698842 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
73698867 CATCATTCGA
Statistics
Matches: 121, Mismatches: 18, Indels: 12
0.80 0.12 0.08
Matches are distributed among these distances:
38 2 0.02
39 30 0.25
40 78 0.64
41 11 0.09
ACGTcount: A:0.25, C:0.29, G:0.22, T:0.23
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
Found at i:73702315 original size:153 final size:153
Alignment explanation
Indices: 73702037--73702343 Score: 587
Period size: 153 Copynumber: 2.0 Consensus size: 153
73702027 AGGTCTTAAG
73702037 CATGAAGTTACCGACTTCGTAGGTAAATGCCTTACTTGTCAGCAGGTTAAGGCTGAGCAACAGTT
1 CATGAAGTTACCGACTTCGTAGGTAAATGCCTTACTTGTCAGCAGGTTAAGGCTGAGCAACAGTT
73702102 TCCTTCAGGGTTGCTTCAGCCAGTTAAGATTCTACTCTGGAAGTGGGAGAGAGTAACTAGGACTT
66 TCCTTCAGGGTTGCTTCAGCCAGTTAAGATTCTACTCTGGAAGTGGGAGAGAGTAACTAGGACTT
* *
73702167 TGTTAGTGGGCTGCCTCTAACGC
131 TGTTAGTGGGCTACCCCTAACGC
73702190 CATGAAGTTACCGACTTCGTAGGTAAATGCCTTACTTGTCAGCAGGTTAAGGCTGAGCAACAGTT
1 CATGAAGTTACCGACTTCGTAGGTAAATGCCTTACTTGTCAGCAGGTTAAGGCTGAGCAACAGTT
*
73702255 TCCTTCAGGGTTGCTTCAGCCAGTTAAGATTCTACTTTGGAAGTGGGAGAGAGTAACTAGGACTT
66 TCCTTCAGGGTTGCTTCAGCCAGTTAAGATTCTACTCTGGAAGTGGGAGAGAGTAACTAGGACTT
73702320 TGTTAGTGGGCTACCCCTAACGC
131 TGTTAGTGGGCTACCCCTAACGC
73702343 C
1 C
73702344 TTCTAAGAAA
Statistics
Matches: 151, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
153 151 1.00
ACGTcount: A:0.24, C:0.21, G:0.26, T:0.29
Consensus pattern (153 bp):
CATGAAGTTACCGACTTCGTAGGTAAATGCCTTACTTGTCAGCAGGTTAAGGCTGAGCAACAGTT
TCCTTCAGGGTTGCTTCAGCCAGTTAAGATTCTACTCTGGAAGTGGGAGAGAGTAACTAGGACTT
TGTTAGTGGGCTACCCCTAACGC
Found at i:73711296 original size:51 final size:49
Alignment explanation
Indices: 73711113--73711302 Score: 188
Period size: 50 Copynumber: 3.8 Consensus size: 49
73711103 AGCCGAAGTT
* * * *
73711113 ATCTGATACGCATAGTAGCGTGCACTTAGTACTACACATGCGACCAA-C
1 ATCTGATACACATAGTAGCCTGCACTTAGTACTACACATGTGACGAATC
* * * * **
73711161 AATC-CAGTACACGTAGTATCCTACACTTAGTACTACACATGTGACCTCATC
1 -ATCTGA-TACACATAGTAGCCTGCACTTAGTACTACACATGTGA-CGAATC
*
73711212 ATCTGATACACGTAGTAGCCTGCACTTAGTACTACACATGTGATCGAAGTC
1 ATCTGATACACATAGTAGCCTGCACTTAGTACTACACATGTGA-CGAA-TC
* *
73711263 AT-TGAGTACGCATAGTAGCCTGCACCTAGTACTACACATG
1 ATCTGA-TACACATAGTAGCCTGCACTTAGTACTACACATG
73711303 CGACTTAACA
Statistics
Matches: 117, Mismatches: 18, Indels: 10
0.81 0.12 0.07
Matches are distributed among these distances:
48 1 0.01
49 34 0.29
50 45 0.38
51 37 0.32
ACGTcount: A:0.31, C:0.26, G:0.17, T:0.26
Consensus pattern (49 bp):
ATCTGATACACATAGTAGCCTGCACTTAGTACTACACATGTGACGAATC
Found at i:73717511 original size:47 final size:47
Alignment explanation
Indices: 73717433--73717842 Score: 640
Period size: 47 Copynumber: 8.6 Consensus size: 47
73717423 CCCTTCGGGA
* * * * * * * *
73717433 CTTATCACATTTATACACTTTCACGTCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
* *
73717480 CCTGTCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
* *
73717527 CTTATCACATATATACACCTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
73717574 CTTATCACATATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCTATTAGGC
73717623 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
73717670 CTTATCACATATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCTATTAGGC
73717719 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
*
73717766 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
*
73717813 CTTATCACATATATATATACTTTCACATTC
1 CTTATCAC--ATATATACACTTTCACATTC
73717843 CACATATACT
Statistics
Matches: 339, Mismatches: 18, Indels: 10
0.92 0.05 0.03
Matches are distributed among these distances:
47 228 0.67
49 111 0.33
ACGTcount: A:0.29, C:0.29, G:0.09, T:0.34
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
Found at i:73717627 original size:96 final size:94
Alignment explanation
Indices: 73717433--73717842 Score: 640
Period size: 96 Copynumber: 4.3 Consensus size: 94
73717423 CCCTTCGGGA
* * * * * * * * *
73717433 CTTATCACATTTATACACTTTCACGTCCATCACGTTGGCCACTCGGCCCTGTCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
73717498 TTTCACATTCATCACATCGGCTATTAGGC
66 TTTCACATTCATCACATCGGCTATTAGGC
*
73717527 CTTATCACATATATACACCTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATAC
73717592 ACTTTCACATTCATCACATCGGCTATTAGGC
64 ACTTTCACATTCATCACATCGGCTATTAGGC
*
73717623 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATAC
73717688 ACTTTCACATTCATCACATCGGCTATTAGGC
64 ACTTTCACATTCATCACATCGGCTATTAGGC
*
73717719 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
*
73717784 TTTCACATTCATCACATCGGCCATTAGGC
66 TTTCACATTCATCACATCGGCTATTAGGC
*
73717813 CTTATCACATATATATATACTTTCACATTC
1 CTTATCAC--ATATATACACTTTCACATTC
73717843 CACATATACT
Statistics
Matches: 298, Mismatches: 14, Indels: 6
0.94 0.04 0.02
Matches are distributed among these distances:
94 91 0.31
96 207 0.69
ACGTcount: A:0.29, C:0.29, G:0.09, T:0.34
Consensus pattern (94 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
TTTCACATTCATCACATCGGCTATTAGGC
Found at i:73717731 original size:143 final size:143
Alignment explanation
Indices: 73717433--73717842 Score: 662
Period size: 143 Copynumber: 2.9 Consensus size: 143
73717423 CCCTTCGGGA
* * * * * * * * * *
73717433 CTTATCACATTTATACACTTTCACGTCCATCACGTTGGCCACTCGGCCCTGTCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACAC
*
73717498 TTTCACATTCATCACATCGGCTATTAGGCCTTATCAC--ATATATACACCTTCACATTCATCACA
66 TTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATATACACTTTCACATTCATCACA
73717561 TCGGCCATTAGGC
131 TCGGCCATTAGGC
73717574 CTTATCACATATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATAC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATAC
73717639 ACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATATACACTTTCACATTCATCA
64 ACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATATACACTTTCACATTCATCA
*
73717704 CATCGGCTATTAGGC
129 CATCGGCCATTAGGC
73717719 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACAC
* *
73717784 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATATACTTTCACATTC
66 TTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATATACACTTTCACATTC
73717843 CACATATACT
Statistics
Matches: 251, Mismatches: 14, Indels: 6
0.93 0.05 0.02
Matches are distributed among these distances:
141 8 0.03
143 198 0.79
145 45 0.18
ACGTcount: A:0.29, C:0.29, G:0.09, T:0.34
Consensus pattern (143 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACAC
TTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATATACACTTTCACATTCATCACA
TCGGCCATTAGGC
Found at i:73726034 original size:13 final size:13
Alignment explanation
Indices: 73726016--73726042 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
73726006 GCTCGGCAAG
73726016 GACACGCCCGTGT
1 GACACGCCCGTGT
73726029 GACACGCCCGTGT
1 GACACGCCCGTGT
73726042 G
1 G
73726043 CGATTACTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.15, C:0.37, G:0.33, T:0.15
Consensus pattern (13 bp):
GACACGCCCGTGT
Found at i:73734077 original size:40 final size:40
Alignment explanation
Indices: 73734006--73734141 Score: 220
Period size: 40 Copynumber: 3.4 Consensus size: 40
73733996 AAGCCAAGTA
* *
73734006 CCTTCGGGATTTA-ACCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
73734045 CCTTTGGGACTTAGCCTGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
73734085 CATTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
73734125 CCTTCGGGACTTAGCCC
1 CCTTCGGGACTTAGCCC
73734142 AGTTATCATC
Statistics
Matches: 88, Mismatches: 8, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
39 11 0.12
40 77 0.88
ACGTcount: A:0.27, C:0.26, G:0.22, T:0.25
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:73740413 original size:122 final size:120
Alignment explanation
Indices: 73740198--73740418 Score: 325
Period size: 122 Copynumber: 1.8 Consensus size: 120
73740188 CATAATAACA
* ** *
73740198 ATGAGAATGAGAATAGAAATGTAATAGGTATGAGGTTTTCCTAATCTCAATTTAACACGGAATGT
1 ATGAGAATAAGAATAGAAATGTAATAGGTATGAGGTGCTCCTAATCTCAATTTAACACGAAATGT
*
73740263 ATGATAACTAACCTAGGAATGCAAATTAAATGATCGACATTGGCATGGTACTAGC
66 ATGATAACTAACCTAAGAATGCAAATTAAATGATCGACATTGGCATGGTACTAGC
* * * * **
73740318 ATGAGAATAAGTATAGTAATGTCATGGGTATGAGGTGCTCCTAATAACTTGATTTAACACGAAAT
1 ATGAGAATAAGAATAGAAATGTAATAGGTATGAGGTGCTCCTAAT--CTCAATTTAACACGAAAT
73740383 GTATGATAACTAACCTAAGAATGCAAATTAAATGAT
64 GTATGATAACTAACCTAAGAATGCAAATTAAATGAT
73740419 AGAAAAATGA
Statistics
Matches: 88, Mismatches: 11, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
120 38 0.43
122 50 0.57
ACGTcount: A:0.39, C:0.12, G:0.20, T:0.29
Consensus pattern (120 bp):
ATGAGAATAAGAATAGAAATGTAATAGGTATGAGGTGCTCCTAATCTCAATTTAACACGAAATGT
ATGATAACTAACCTAAGAATGCAAATTAAATGATCGACATTGGCATGGTACTAGC
Found at i:73740546 original size:20 final size:20
Alignment explanation
Indices: 73740480--73740550 Score: 61
Period size: 20 Copynumber: 3.4 Consensus size: 20
73740470 ATAAGAAATA
* *
73740480 AGTAAAATAGAAGTGAAAGC
1 AGTAAACTAGAAGTGAAAGG
* * *
73740500 AGTAAACAAATGCTAAGGGAAACG
1 AGTAAAC-TA-G--AAGTGAAAGG
73740524 AGTAAACTAGAAGTGAAAGG
1 AGTAAACTAGAAGTGAAAGG
73740544 AGTAAAC
1 AGTAAAC
73740551 AAACACTAAA
Statistics
Matches: 39, Mismatches: 8, Indels: 8
0.71 0.15 0.15
Matches are distributed among these distances:
20 21 0.54
21 1 0.03
22 2 0.05
23 1 0.03
24 14 0.36
ACGTcount: A:0.52, C:0.08, G:0.25, T:0.14
Consensus pattern (20 bp):
AGTAAACTAGAAGTGAAAGG
Found at i:73740565 original size:44 final size:44
Alignment explanation
Indices: 73740480--73740565 Score: 127
Period size: 44 Copynumber: 2.0 Consensus size: 44
73740470 ATAAGAAATA
** *
73740480 AGTAAAATAGAAGTGAAAGCAGTAAACAAATGCTAAGGGAAACG
1 AGTAAAATAGAAGTGAAAGCAGTAAACAAACACTAAAGGAAACG
* *
73740524 AGTAAACTAGAAGTGAAAGGAGTAAACAAACACTAAAGGAAA
1 AGTAAAATAGAAGTGAAAGCAGTAAACAAACACTAAAGGAAA
73740566 GAGATTGAGC
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
44 37 1.00
ACGTcount: A:0.55, C:0.09, G:0.23, T:0.13
Consensus pattern (44 bp):
AGTAAAATAGAAGTGAAAGCAGTAAACAAACACTAAAGGAAACG
Found at i:73741776 original size:20 final size:20
Alignment explanation
Indices: 73741751--73741789 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
73741741 AGCTTTTCGT
* *
73741751 AATTTTTGAGAATTTGGTAA
1 AATTTTTAAAAATTTGGTAA
73741771 AATTTTTAAAAATTTGGTA
1 AATTTTTAAAAATTTGGTA
73741790 TTTGGTTGTG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.38, C:0.00, G:0.15, T:0.46
Consensus pattern (20 bp):
AATTTTTAAAAATTTGGTAA
Found at i:73742367 original size:34 final size:34
Alignment explanation
Indices: 73742319--73742388 Score: 104
Period size: 34 Copynumber: 2.1 Consensus size: 34
73742309 CTTTTTCTCC
73742319 CCTTCTTCTTCTCTAGCAAAAATTACCACTCTTT
1 CCTTCTTCTTCTCTAGCAAAAATTACCACTCTTT
* ** *
73742353 CCTTTTTCTTCTCTAGCCGAAATTACCCCTCTTT
1 CCTTCTTCTTCTCTAGCAAAAATTACCACTCTTT
73742387 CC
1 CC
73742389 ATCCATCTTT
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
34 32 1.00
ACGTcount: A:0.19, C:0.36, G:0.04, T:0.41
Consensus pattern (34 bp):
CCTTCTTCTTCTCTAGCAAAAATTACCACTCTTT
Found at i:73743698 original size:10 final size:10
Alignment explanation
Indices: 73743677--73743723 Score: 78
Period size: 10 Copynumber: 4.7 Consensus size: 10
73743667 CATGAGATTT
73743677 TGATAT-ACA
1 TGATATGACA
73743686 TGATATGACA
1 TGATATGACA
73743696 TGATATGACA
1 TGATATGACA
73743706 TGATATGCACA
1 TGATATG-ACA
73743717 TGATATG
1 TGATATG
73743724 TTATGAGATG
Statistics
Matches: 36, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
9 6 0.17
10 20 0.56
11 10 0.28
ACGTcount: A:0.38, C:0.11, G:0.19, T:0.32
Consensus pattern (10 bp):
TGATATGACA
Found at i:73743719 original size:21 final size:21
Alignment explanation
Indices: 73743677--73743743 Score: 84
Period size: 21 Copynumber: 3.3 Consensus size: 21
73743667 CATGAGATTT
73743677 TGATAT-ACATGATATG-ACA
1 TGATATGACATGATATGCACA
73743696 TGATATGACATGATATGCACA
1 TGATATGACATGATATGCACA
** * *
73743717 TGATATGTTATGAGATGCACT
1 TGATATGACATGATATGCACA
73743738 TGATAT
1 TGATAT
73743744 ACTCATTATA
Statistics
Matches: 42, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
19 6 0.14
20 10 0.24
21 26 0.62
ACGTcount: A:0.36, C:0.10, G:0.19, T:0.34
Consensus pattern (21 bp):
TGATATGACATGATATGCACA
Found at i:73749807 original size:20 final size:20
Alignment explanation
Indices: 73749782--73749820 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
73749772 GGATTTTTGT
*
73749782 AATTTTCAAGAATTTGGTAA
1 AATTTTCAAAAATTTGGTAA
*
73749802 AATTTTTAAAAATTTGGTA
1 AATTTTCAAAAATTTGGTA
73749821 TTTGGTTGTG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.41, C:0.03, G:0.13, T:0.44
Consensus pattern (20 bp):
AATTTTCAAAAATTTGGTAA
Found at i:73751695 original size:10 final size:10
Alignment explanation
Indices: 73751674--73751750 Score: 102
Period size: 10 Copynumber: 7.6 Consensus size: 10
73751664 CATGAGATTT
73751674 TGATAT-ACA
1 TGATATGACA
73751683 TGATATGACA
1 TGATATGACA
73751693 TGATATGACA
1 TGATATGACA
73751703 TGATATGACA
1 TGATATGACA
73751713 TGATATGCACA
1 TGATATG-ACA
**
73751724 TGATATGTTA
1 TGATATGACA
*
73751734 TGAGATGCACA
1 TGATATG-ACA
73751745 TGATAT
1 TGATAT
73751751 ACTCATTATA
Statistics
Matches: 59, Mismatches: 6, Indels: 4
0.86 0.09 0.06
Matches are distributed among these distances:
9 6 0.10
10 37 0.63
11 16 0.27
ACGTcount: A:0.38, C:0.10, G:0.19, T:0.32
Consensus pattern (10 bp):
TGATATGACA
Found at i:73751726 original size:21 final size:21
Alignment explanation
Indices: 73751680--73751750 Score: 108
Period size: 21 Copynumber: 3.4 Consensus size: 21
73751670 ATTTTGATAT
73751680 ACATGATATGACATGATATG-
1 ACATGATATGACATGATATGC
73751700 ACATGATATGACATGATATGC
1 ACATGATATGACATGATATGC
** *
73751721 ACATGATATGTTATGAGATGC
1 ACATGATATGACATGATATGC
73751742 ACATGATAT
1 ACATGATAT
73751751 ACTCATTATA
Statistics
Matches: 47, Mismatches: 3, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
20 20 0.43
21 27 0.57
ACGTcount: A:0.38, C:0.11, G:0.20, T:0.31
Consensus pattern (21 bp):
ACATGATATGACATGATATGC
Found at i:73754543 original size:43 final size:43
Alignment explanation
Indices: 73754495--73754606 Score: 197
Period size: 43 Copynumber: 2.6 Consensus size: 43
73754485 CCGGCATTAC
73754495 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
73754538 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
* * *
73754581 GCCTACTAGGCATGAAGGCCCAAATA
1 GCCTGCTAGGCACGAAGGCCCGAATA
73754607 TAATACCAGC
Statistics
Matches: 66, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
43 66 1.00
ACGTcount: A:0.31, C:0.33, G:0.25, T:0.11
Consensus pattern (43 bp):
GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
Found at i:73754655 original size:38 final size:38
Alignment explanation
Indices: 73754599--73754706 Score: 135
Period size: 38 Copynumber: 2.8 Consensus size: 38
73754589 GGCATGAAGG
* * * *
73754599 CCCAAATATAATACCAGCACTAGGCCTGCGGGATTTAT
1 CCCAGATATAATACCAGCACGAAGCCTGCGGGATTTAA
* * *
73754637 CCCGGATATAATACCAGCACGAAGCATACGGGATTTAA
1 CCCAGATATAATACCAGCACGAAGCCTGCGGGATTTAA
**
73754675 CCCAGATATTTTACCAGCACGAAGCCTGCGGG
1 CCCAGATATAATACCAGCACGAAGCCTGCGGG
73754707 TCTTTAAGCC
Statistics
Matches: 58, Mismatches: 12, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
38 58 1.00
ACGTcount: A:0.31, C:0.27, G:0.21, T:0.20
Consensus pattern (38 bp):
CCCAGATATAATACCAGCACGAAGCCTGCGGGATTTAA
Found at i:73764242 original size:43 final size:41
Alignment explanation
Indices: 73764180--73764348 Score: 198
Period size: 43 Copynumber: 4.0 Consensus size: 41
73764170 CAAATAAAGC
* * * *
73764180 TCATA-CAATGCC-ATATCCCAGATATAGTCTTACATGTTATC
1 TCATATCAATGCCAATGTCCCAGACATGGTCTTACATG-TA-A
* *
73764221 TCATATCAATGCCAATGTCCCAGACATGGTCTTACACGAAA
1 TCATATCAATGCCAATGTCCCAGACATGGTCTTACATGTAA
*
73764262 TCATATAACATGCCAATGTCCCAGACATGGTCTTACATGTAA
1 TCATATCA-ATGCCAATGTCCCAGACATGGTCTTACATGTAA
* *
73764304 TCATAGTACAATGCCAATGTCCTAGACATGTTCTTACATGTAA
1 TCATA-T-CAATGCCAATGTCCCAGACATGGTCTTACATGTAA
73764347 TC
1 TC
73764349 CCATCTCGGT
Statistics
Matches: 111, Mismatches: 12, Indels: 8
0.85 0.09 0.06
Matches are distributed among these distances:
41 12 0.11
42 44 0.40
43 54 0.49
44 1 0.01
ACGTcount: A:0.33, C:0.24, G:0.13, T:0.30
Consensus pattern (41 bp):
TCATATCAATGCCAATGTCCCAGACATGGTCTTACATGTAA
Found at i:73764275 original size:42 final size:41
Alignment explanation
Indices: 73764221--73764341 Score: 163
Period size: 42 Copynumber: 2.9 Consensus size: 41
73764211 ACATGTTATC
73764221 TCATAT-CAATGCCAATGTCCCAGACATGGTCTTACACGAAA
1 TCATATAC-ATGCCAATGTCCCAGACATGGTCTTACACGAAA
* *
73764262 TCATATAACATGCCAATGTCCCAGACATGGTCTTACATGTAA
1 TCATAT-ACATGCCAATGTCCCAGACATGGTCTTACACGAAA
* *
73764304 TCATAGTACAATGCCAATGTCCTAGACATGTTCTTACA
1 TCATA-TAC-ATGCCAATGTCCCAGACATGGTCTTACA
73764342 TGTAATCCCA
Statistics
Matches: 72, Mismatches: 4, Indels: 6
0.88 0.05 0.07
Matches are distributed among these distances:
41 6 0.08
42 38 0.53
43 28 0.39
ACGTcount: A:0.33, C:0.25, G:0.14, T:0.28
Consensus pattern (41 bp):
TCATATACATGCCAATGTCCCAGACATGGTCTTACACGAAA
Found at i:73764339 original size:85 final size:84
Alignment explanation
Indices: 73764187--73764341 Score: 215
Period size: 85 Copynumber: 1.8 Consensus size: 84
73764177 AGCTCATACA
* *
73764187 ATGCCATATCCCAGATATAGTCTTACATGTTATCTCATATCAATGCCAATGTCCCAGACATGGTC
1 ATGCCATATCCCAGACATAGTCTTACATGTAATCTCATATCAATGCCAATGTCCCAGACATGGTC
73764252 TTACACGAAATCATATAAC
66 TTACACGAAATCATATAAC
* * *
73764271 ATGCCAATGTCCCAGACATGGTCTTACATGTAA--TCATAGTACAATGCCAATGTCCTAGACATG
1 ATGCC-ATATCCCAGACATAGTCTTACATGTAATCTCATA-T-CAATGCCAATGTCCCAGACATG
*
73764334 TTCTTACA
63 GTCTTACA
73764342 TGTAATCCCA
Statistics
Matches: 62, Mismatches: 6, Indels: 5
0.85 0.08 0.07
Matches are distributed among these distances:
83 5 0.08
84 6 0.10
85 51 0.82
ACGTcount: A:0.32, C:0.25, G:0.14, T:0.30
Consensus pattern (84 bp):
ATGCCATATCCCAGACATAGTCTTACATGTAATCTCATATCAATGCCAATGTCCCAGACATGGTC
TTACACGAAATCATATAAC
Found at i:73769633 original size:25 final size:25
Alignment explanation
Indices: 73769605--73769683 Score: 74
Period size: 25 Copynumber: 3.3 Consensus size: 25
73769595 CTAATGGCCG
73769605 ATGTGATGAATGTGAAAGTGTATAT
1 ATGTGATGAATGTGAAAGTGTATAT
*** ****
73769630 ATGTGAT-AATGCCTAA-TG-GCCG
1 ATGTGATGAATGTGAAAGTGTATAT
73769652 ATGTGATGAATGTGAAAGTGTATAT
1 ATGTGATGAATGTGAAAGTGTATAT
73769677 ATGTGAT
1 ATGTGAT
73769684 AGGGCCTAAT
Statistics
Matches: 37, Mismatches: 14, Indels: 6
0.65 0.25 0.11
Matches are distributed among these distances:
22 7 0.19
23 8 0.22
24 8 0.22
25 14 0.38
ACGTcount: A:0.33, C:0.05, G:0.28, T:0.34
Consensus pattern (25 bp):
ATGTGATGAATGTGAAAGTGTATAT
Found at i:73769744 original size:49 final size:49
Alignment explanation
Indices: 73769592--73770500 Score: 1704
Period size: 49 Copynumber: 18.7 Consensus size: 49
73769582 ATGATAGTAT
*
73769592 GGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAG
*
73769639 TGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAG
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAG
73769686 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAG
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAG
73769735 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAG
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAG
73769784 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAG
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAG
73769833 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAG
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAG
73769882 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAG
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAG
73769931 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAG
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAG
73769980 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAG
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAG
73770029 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAG
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAG
73770078 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAG
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAG
73770127 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAG
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAG
73770176 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAG
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAG
73770225 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAG
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAG
73770274 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAG
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAG
73770323 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAG
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAG
* *
73770372 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAG
* *
73770421 TGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAG
*
73770468 TGCCTAATGGCCGATGTGATGAATGTGATAAGT
1 GGCCTAATGGCCGATGTGATGAATGTGA-AAGT
73770501 CCCGAAGGGC
Statistics
Matches: 853, Mismatches: 6, Indels: 5
0.99 0.01 0.01
Matches are distributed among these distances:
47 119 0.14
48 4 0.00
49 730 0.86
ACGTcount: A:0.31, C:0.08, G:0.30, T:0.31
Consensus pattern (49 bp):
GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAG
Found at i:73770440 original size:22 final size:23
Alignment explanation
Indices: 73770412--73770492 Score: 67
Period size: 22 Copynumber: 3.5 Consensus size: 23
73770402 GTGTGTATAT
73770412 ATGTGAT-AATGCCTAATGGCCG
1 ATGTGATGAATGCCTAATGGCCG
*** ****
73770434 ATGTGATGAATGTGAAAGTGTATAT
1 ATGTGATGAATGCCTAA-TG-GCCG
73770459 ATGTGAT-AATGCCTAATGGCCG
1 ATGTGATGAATGCCTAATGGCCG
73770481 ATGTGATGAATG
1 ATGTGATGAATG
73770493 TGATAAGTCC
Statistics
Matches: 41, Mismatches: 14, Indels: 7
0.66 0.23 0.11
Matches are distributed among these distances:
22 14 0.34
23 12 0.29
24 8 0.20
25 7 0.17
ACGTcount: A:0.31, C:0.10, G:0.28, T:0.31
Consensus pattern (23 bp):
ATGTGATGAATGCCTAATGGCCG
Found at i:73770674 original size:37 final size:37
Alignment explanation
Indices: 73770618--73770696 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
73770608 CCGAGGTCTA
* * *
73770618 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
73770655 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
73770692 AAGAC
1 AAGAC
73770697 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:73772598 original size:43 final size:43
Alignment explanation
Indices: 73772550--73772652 Score: 197
Period size: 43 Copynumber: 2.4 Consensus size: 43
73772540 TTGGTTTTCA
73772550 GCACTAAGTGTGCGGGCAAGAAGTGTTCACGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAAGAAGTGTTCACGGTTGTGAGATTG
*
73772593 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAAGAAGTGTTCACGGTTGTGAGATTG
73772636 GCACTAAGTGTGCGGGC
1 GCACTAAGTGTGCGGGC
73772653 TTGAAATGCA
Statistics
Matches: 59, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
43 59 1.00
ACGTcount: A:0.22, C:0.16, G:0.37, T:0.25
Consensus pattern (43 bp):
GCACTAAGTGTGCGGGCAAGAAGTGTTCACGGTTGTGAGATTG
Found at i:73772669 original size:29 final size:29
Alignment explanation
Indices: 73772634--73772707 Score: 105
Period size: 29 Copynumber: 2.6 Consensus size: 29
73772624 GTTGTGAGAT
* *
73772634 TGGCACTAAGTGTGCGGGCTTGAAA-TGCA
1 TGGCACTAAGTGTGCGAG-TTGAAAGTACA
*
73772663 TGGCACTAAGTGTGCGAGTTTAAAGTACA
1 TGGCACTAAGTGTGCGAGTTGAAAGTACA
73772692 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
73772708 TGGTTGATTA
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
28 5 0.12
29 36 0.88
ACGTcount: A:0.26, C:0.16, G:0.32, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGTTGAAAGTACA
Found at i:73773145 original size:40 final size:40
Alignment explanation
Indices: 73773018--73773333 Score: 307
Period size: 40 Copynumber: 7.9 Consensus size: 40
73773008 TCGAATGATG
** *
73773018 TCCGGGCTAAGTCCCGAAG-GC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCT-AGTGA-TATA
* ** * * *
73773058 TCCGGACTAAGAT-CCGAAG-GCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGAGCATTCATGCTAGTGA-TATA
*
73773098 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATA
* *
73773138 TCTGGGCTAAGTTCCGAAGAGCATTCATGCTAGTGATATA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATA
* * *
73773178 TCCGGGCTAAGTCCCGAGGAGCATTCGTGCTAGTGATGTA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATA
* *
73773218 TCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATATA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATA
* ** * ** * *
73773258 TCCGTGCTAAACCCCAAAGAGCATTTGTGCTGGTGTTATA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATA
* * * *
73773298 TCCGGGCTAGGTCCCGAAGAGTAATCATGCTGGTGA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGA
73773334 CGTGTATTCG
Statistics
Matches: 230, Mismatches: 42, Indels: 8
0.82 0.15 0.03
Matches are distributed among these distances:
39 1 0.00
40 210 0.91
41 19 0.08
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATA
Found at i:73773154 original size:80 final size:80
Alignment explanation
Indices: 73773018--73773318 Score: 347
Period size: 80 Copynumber: 3.8 Consensus size: 80
73773008 TCGAATGATG
* ** * *
73773018 TCCGGGCTAAGTCCCGAAG-GC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAG-GCA
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCT-AGTGA-TGTATCCGGGCTAAGTTCCGAAGAGCA
* * * *
73773080 TTGGTGCGAGTTACTAAA
64 TTCGTGCTAGTGA-TATA
* *
73773098 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATCTGGGCTAAGTTCCGAAGAGCATT
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTTCCGAAGAGCATT
*
73773163 CATGCTAGTGATATA
66 CGTGCTAGTGATATA
*
73773178 TCCGGGCTAAGTCCCGAGGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTTCCGAAGAGCATT
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTTCCGAAGAGCATT
73773243 CGTGCTAGTGATATA
66 CGTGCTAGTGATATA
* ** * * * * * * *
73773258 TCCGTGCTAAACCCCAAAGAGCATTTGTGCTGGTGTTATATCCGGGCTAGGTCCCGAAGAG
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTTCCGAAGAG
73773319 TAATCATGCT
Statistics
Matches: 191, Mismatches: 27, Indels: 6
0.85 0.12 0.03
Matches are distributed among these distances:
80 166 0.87
81 19 0.10
82 6 0.03
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.26
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTTCCGAAGAGCATT
CGTGCTAGTGATATA
Found at i:73776850 original size:49 final size:49
Alignment explanation
Indices: 73776741--73777653 Score: 1785
Period size: 49 Copynumber: 18.7 Consensus size: 49
73776731 ATGATAGTAT
*
73776741 GGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAG
*
73776788 GGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAG
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAG
73776837 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAG
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAG
73776886 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAG
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAG
73776935 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAG
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAG
73776984 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAG
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAG
73777033 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAG
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAG
73777082 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAG
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAG
73777131 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAG
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAG
73777180 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAG
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAG
73777229 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAG
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAG
73777278 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAG
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAG
73777327 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAG
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAG
73777376 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAG
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAG
73777425 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAG
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAG
73777474 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAG
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAG
73777523 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAG
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAG
73777572 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAG
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAG
73777621 GGCCTAATGGCCGATGTGATGAATGTGATAAGT
1 GGCCTAATGGCCGATGTGATGAATGTGA-AAGT
73777654 CCCGAAGGGC
Statistics
Matches: 860, Mismatches: 3, Indels: 3
0.99 0.00 0.00
Matches are distributed among these distances:
47 32 0.04
49 824 0.96
50 4 0.00
ACGTcount: A:0.31, C:0.08, G:0.31, T:0.30
Consensus pattern (49 bp):
GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAG
Found at i:73777827 original size:37 final size:37
Alignment explanation
Indices: 73777771--73777849 Score: 113
Period size: 37 Copynumber: 2.1 Consensus size: 37
73777761 CCGAGCTCTA
* * * *
73777771 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGCCCGGGT
*
73777808 AAGACCCGATAACTTCGTGTGGAGATTATGCCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGCCCGGGT
73777845 AAGAC
1 AAGAC
73777850 TTCGTAATAA
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.24, C:0.20, G:0.32, T:0.24
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGCCCGGGT
Found at i:73796904 original size:40 final size:40
Alignment explanation
Indices: 73796810--73796954 Score: 186
Period size: 40 Copynumber: 3.6 Consensus size: 40
73796800 TACTCGAATG
*
73796810 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGCGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCT-AGCGACT
* *
73796851 ACATCCGGACTAAGAT-CCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAG-TCCCGAAGGCATTTGTGCTAGCGACT
* *
73796891 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGA-T
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCGACT
* *
73796930 CATATCCGGGTTAAGACCCGAAGGC
1 -ATATCCGGGCTAAGTCCCGAAGGC
73796955 CTTGTGCGAG
Statistics
Matches: 92, Mismatches: 9, Indels: 7
0.85 0.08 0.06
Matches are distributed among these distances:
39 2 0.02
40 61 0.66
41 28 0.30
42 1 0.01
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.24
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCGACT
Found at i:73799455 original size:26 final size:26
Alignment explanation
Indices: 73799422--73799490 Score: 111
Period size: 26 Copynumber: 2.7 Consensus size: 26
73799412 TCGTAGCAAC
73799422 GCTACCAGTAACAGTATCATAGAAAA
1 GCTACCAGTAACAGTATCATAGAAAA
* * *
73799448 GCTTCCAGTAACAGTATCGTAGCAAA
1 GCTACCAGTAACAGTATCATAGAAAA
73799474 GCTACCAGTAACAGTAT
1 GCTACCAGTAACAGTAT
73799491 ATGTGGCAAA
Statistics
Matches: 39, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 39 1.00
ACGTcount: A:0.39, C:0.22, G:0.17, T:0.22
Consensus pattern (26 bp):
GCTACCAGTAACAGTATCATAGAAAA
Found at i:73799507 original size:27 final size:27
Alignment explanation
Indices: 73799452--73799533 Score: 85
Period size: 27 Copynumber: 3.1 Consensus size: 27
73799442 AGAAAAGCTT
* * *
73799452 CCAGTAACAGTAT-CGTAGCAAAGCTA
1 CCAGTAACAGTATATGTGGCAAAGCCA
73799478 CCAGTAACAGTATATGTGGCAAAGCCA
1 CCAGTAACAGTATATGTGGCAAAGCCA
** * **
73799505 CCAAAAATAGTATATGTGGCGGAGCCA
1 CCAGTAACAGTATATGTGGCAAAGCCA
73799532 CC
1 CC
73799534 GGTATCATAC
Statistics
Matches: 47, Mismatches: 8, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
26 13 0.28
27 34 0.72
ACGTcount: A:0.37, C:0.23, G:0.22, T:0.18
Consensus pattern (27 bp):
CCAGTAACAGTATATGTGGCAAAGCCA
Found at i:73802418 original size:27 final size:24
Alignment explanation
Indices: 73802388--73802436 Score: 62
Period size: 27 Copynumber: 1.9 Consensus size: 24
73802378 AAAATTATTT
*
73802388 TCTGTGATTATTTTGTGTGAATTTATA
1 TCTGTGA-AATTTT-TGTG-ATTTATA
73802415 TCTGTGAAATTTTTGTGATTTA
1 TCTGTGAAATTTTTGTGATTTA
73802437 ATTTTGTCGT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
24 5 0.24
25 4 0.19
26 5 0.24
27 7 0.33
ACGTcount: A:0.22, C:0.04, G:0.18, T:0.55
Consensus pattern (24 bp):
TCTGTGAAATTTTTGTGATTTATA
Found at i:73809637 original size:42 final size:43
Alignment explanation
Indices: 73809536--73809690 Score: 122
Period size: 42 Copynumber: 3.6 Consensus size: 43
73809526 AACGGGTACA
* * * *
73809536 ATGCCGACGTCCCGGAC-GTGGTCTTATATGTAATTCAGTATCG
1 ATGCCGATGTCCCAGACAG-GGTCTTATACGTAAATCAGTATCG
**
73809579 ATGCCTCTGTCCCAGACAGGGTCTTATACG-AAATCAG-ATACG
1 ATGCCGATGTCCCAGACAGGGTCTTATACGTAAATCAGTAT-CG
* * * *
73809621 ATGCCGATGTCTCAGACATGGTCTTACACGTAAATTTCA-AATCG
1 ATGCCGATGTCCCAGACAGGGTCTTATACGTAAA--TCAGTATCG
* *
73809665 AGGCCTG-TGTCCCAGACACGGTCTTA
1 ATGCC-GATGTCCCAGACAGGGTCTTA
73809691 CACGATATCT
Statistics
Matches: 91, Mismatches: 14, Indels: 13
0.77 0.12 0.11
Matches are distributed among these distances:
41 2 0.02
42 33 0.36
43 26 0.29
44 24 0.26
45 6 0.07
ACGTcount: A:0.25, C:0.25, G:0.23, T:0.27
Consensus pattern (43 bp):
ATGCCGATGTCCCAGACAGGGTCTTATACGTAAATCAGTATCG
Found at i:73812689 original size:33 final size:33
Alignment explanation
Indices: 73812644--73812707 Score: 83
Period size: 33 Copynumber: 1.9 Consensus size: 33
73812634 AGTGACAGTC
* *
73812644 TGGGCCTGAGCCCTATTCAGAAACAATACAGAG
1 TGGGCCTGAGCCCAATACAGAAACAATACAGAG
* * *
73812677 TGGGCCTTAGCCCAATACAGTATCAATACAG
1 TGGGCCTGAGCCCAATACAGAAACAATACAG
73812708 TACAATAATG
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
33 26 1.00
ACGTcount: A:0.33, C:0.25, G:0.22, T:0.20
Consensus pattern (33 bp):
TGGGCCTGAGCCCAATACAGAAACAATACAGAG
Found at i:73812841 original size:26 final size:26
Alignment explanation
Indices: 73812811--73812882 Score: 83
Period size: 26 Copynumber: 2.8 Consensus size: 26
73812801 ACCAATATTG
* *
73812811 CAGCAAGGCTGCCAATAACAGTATCA
1 CAGCAAAGCTGCTAATAACAGTATCA
* *
73812837 TAGCAAAGC-GACTAGTAACAGTATCA
1 CAGCAAAGCTG-CTAATAACAGTATCA
*
73812863 CAACAAAGCTGCTAATAACA
1 CAGCAAAGCTGCTAATAACA
73812883 ATATATGTGG
Statistics
Matches: 37, Mismatches: 7, Indels: 4
0.77 0.15 0.08
Matches are distributed among these distances:
25 1 0.03
26 35 0.95
27 1 0.03
ACGTcount: A:0.43, C:0.24, G:0.17, T:0.17
Consensus pattern (26 bp):
CAGCAAAGCTGCTAATAACAGTATCA
Found at i:73815177 original size:13 final size:13
Alignment explanation
Indices: 73815161--73815193 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
73815151 TTTAATTAAA
*
73815161 TTAGTTAATTAGT
1 TTAGATAATTAGT
73815174 TTAGATAATTAGT
1 TTAGATAATTAGT
73815187 TTA-ATAA
1 TTAGATAA
73815194 ACAAACCCTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 4 0.21
13 15 0.79
ACGTcount: A:0.39, C:0.00, G:0.12, T:0.48
Consensus pattern (13 bp):
TTAGATAATTAGT
Found at i:73816102 original size:33 final size:34
Alignment explanation
Indices: 73816058--73816123 Score: 100
Period size: 33 Copynumber: 2.0 Consensus size: 34
73816048 AATAGTGCAT
*
73816058 ACAGTAACAGTCTGGG-CTTGAGCCCTATTCAGTA
1 ACAGTAACAGTCTGGGCCTT-AGCCCTATACAGTA
73816092 ACAGT-ACAGTCTGGGCCTTAGCCCTATACAGT
1 ACAGTAACAGTCTGGGCCTTAGCCCTATACAGT
73816124 GATAGTGTGG
Statistics
Matches: 30, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
33 22 0.73
34 8 0.27
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.26
Consensus pattern (34 bp):
ACAGTAACAGTCTGGGCCTTAGCCCTATACAGTA
Found at i:73825860 original size:39 final size:41
Alignment explanation
Indices: 73825765--73825948 Score: 199
Period size: 40 Copynumber: 4.6 Consensus size: 41
73825755 TTGAATGATG
*
73825765 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTAAGTGAC-AATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAAGT-ACTAATA
*
73825804 TCCGGACTAAGAT-CCGAAGGCATTTGTGCG-AGATACTAAT-
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAAG-TACTAATA
73825844 TCCGGGCTAAG-CCCGAAGGCATTTGTGCG-AGTTACTAA-A
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAAG-TACTAATA
* * *
73825883 TCTGGGTTAAGTCCCGAAGGCATTTGTGCGAATTACT-ATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAAGTACTAATA
* *
73825923 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
73825949 AACGAGGAGC
Statistics
Matches: 124, Mismatches: 11, Indels: 19
0.81 0.07 0.12
Matches are distributed among these distances:
39 53 0.43
40 60 0.48
41 11 0.09
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.26
Consensus pattern (41 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAAGTACTAATA
Found at i:73825970 original size:79 final size:79
Alignment explanation
Indices: 73825817--73825981 Score: 185
Period size: 79 Copynumber: 2.1 Consensus size: 79
73825807 GGACTAAGAT
* ** *
73825817 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTGACTAA
* *
73825882 ATCTGGGTTAAGTC
66 ATCTCGGTTAAATC
*
73825896 CCGAAGGCATTTGTGCGA-ATTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-GAG
1 CCGAAGGCATTTGTGCGAGA-TACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTGA-
* *
73825958 CTATATC-CGGTTAAATT
62 CTAAATCTCGGTTAAATC
73825975 CCGAAGG
1 CCGAAGG
73825982 TACGTGATTT
Statistics
Matches: 73, Mismatches: 9, Indels: 8
0.81 0.10 0.09
Matches are distributed among these distances:
78 3 0.04
79 46 0.63
80 24 0.33
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTGACTAA
ATCTCGGTTAAATC
Found at i:73828007 original size:75 final size:75
Alignment explanation
Indices: 73827884--73828030 Score: 285
Period size: 75 Copynumber: 2.0 Consensus size: 75
73827874 TTCTGCCTAT
73827884 TATTGGTGGAGTACTCTGACTTCTGTTGTGCCCCGAGAGCAAGTAACTTGGGAGTTTTTCCAAAC
1 TATTGGTGGAGTACTCTGACTTCTGTTGTGCCCCGAGAGCAAGTAACTTGGGAGTTTTTCCAAAC
73827949 TGAGTTTTAC
66 TGAGTTTTAC
*
73827959 TATTGGTGGAGTACTCTGACTTCTGTTGTGCCCTGAGAGCAAGTAACTTGGGAGTTTTTCCAAAC
1 TATTGGTGGAGTACTCTGACTTCTGTTGTGCCCCGAGAGCAAGTAACTTGGGAGTTTTTCCAAAC
73828024 TGAGTTT
66 TGAGTTT
73828031 CGGAAAAAGT
Statistics
Matches: 71, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
75 71 1.00
ACGTcount: A:0.21, C:0.18, G:0.26, T:0.35
Consensus pattern (75 bp):
TATTGGTGGAGTACTCTGACTTCTGTTGTGCCCCGAGAGCAAGTAACTTGGGAGTTTTTCCAAAC
TGAGTTTTAC
Found at i:73834422 original size:40 final size:40
Alignment explanation
Indices: 73834322--73834514 Score: 178
Period size: 40 Copynumber: 4.8 Consensus size: 40
73834312 TTCGAATGAT
* * * ** *
73834322 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCGATTATA
1 ATCCGGGCTAAGTCCCGAAGGCATCTGCGCGAGTTACTA-A
* *
73834363 A-CCGGGC-AAGTCCCAAAGGCATCTGCGTGAGTTACTAA
1 ATCCGGGCTAAGTCCCGAAGGCATCTGCGCGAGTTACTAA
* * *
73834401 ATTCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAA
1 ATCCGGGCTAAGTCCCGAAGGCATCTGCGCGAGTTACTAA
* * *
73834441 ATCCGGGCTAAGTCCCGAAGGCAAT-TGTGCAAGTTACTCTA
1 ATCCGGGCTAAGTCCCGAAGGC-ATCTGCGCGAGTTACT-AA
* * *
73834482 A-CCGGGCTATGTCCCGAAGGCATTTGAGCGAGT
1 ATCCGGGCTAAGTCCCGAAGGCATCTGCGCGAGT
73834515 AATTATATCC
Statistics
Matches: 128, Mismatches: 19, Indels: 11
0.81 0.12 0.07
Matches are distributed among these distances:
38 2 0.02
39 29 0.23
40 92 0.72
41 5 0.04
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.24
Consensus pattern (40 bp):
ATCCGGGCTAAGTCCCGAAGGCATCTGCGCGAGTTACTAA
Found at i:73834525 original size:80 final size:79
Alignment explanation
Indices: 73834322--73834526 Score: 234
Period size: 80 Copynumber: 2.6 Consensus size: 79
73834312 TTCGAATGAT
* ** *
73834322 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCGATTATAACCGGGCAAGTCCCAAAGGCATCT
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTAATTATATCCGGGCAAGTCCCAAAGGCATCT
**
73834387 GCGTGAGTTACTAA
66 GCGCAAGTTACTAA
* * * * *
73834401 ATTCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGCTAAGTCCCGAAGGCAAT
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTAATTATATCCGGGC-AAGTCCCAAAGGC-AT
* *
73834466 -TGTGCAAGTTACTCTA
64 CTGCGCAAGTTACT-AA
* *
73834482 A-CCGGGCTATGTCCCGAAGGCATTTGAGCGAGTAATTATATCCGG
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTAATTATATCCGG
73834527 TTAAATTTCG
Statistics
Matches: 105, Mismatches: 18, Indels: 5
0.82 0.14 0.04
Matches are distributed among these distances:
79 41 0.39
80 60 0.57
81 4 0.04
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.24
Consensus pattern (79 bp):
ATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTAATTATATCCGGGCAAGTCCCAAAGGCATCT
GCGCAAGTTACTAA
Found at i:73837921 original size:12 final size:11
Alignment explanation
Indices: 73837904--73837943 Score: 57
Period size: 11 Copynumber: 3.7 Consensus size: 11
73837894 TGTGAATTGA
73837904 ATTAAATTGAGT
1 ATTAAATTG-GT
73837916 ATTAAA-TGG-
1 ATTAAATTGGT
73837925 ATTAAATTGGT
1 ATTAAATTGGT
73837936 ATTAAATT
1 ATTAAATT
73837944 CATTTATATA
Statistics
Matches: 26, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
9 6 0.23
10 4 0.15
11 10 0.38
12 6 0.23
ACGTcount: A:0.42, C:0.00, G:0.15, T:0.42
Consensus pattern (11 bp):
ATTAAATTGGT
Found at i:73837939 original size:20 final size:21
Alignment explanation
Indices: 73837904--73837942 Score: 71
Period size: 20 Copynumber: 1.9 Consensus size: 21
73837894 TGTGAATTGA
73837904 ATTAAATTGAGTATTAAATGG
1 ATTAAATTGAGTATTAAATGG
73837925 ATTAAATTG-GTATTAAAT
1 ATTAAATTGAGTATTAAAT
73837943 TCATTTATAT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 9 0.50
21 9 0.50
ACGTcount: A:0.44, C:0.00, G:0.15, T:0.41
Consensus pattern (21 bp):
ATTAAATTGAGTATTAAATGG
Found at i:73850929 original size:121 final size:122
Alignment explanation
Indices: 73850709--73850972 Score: 331
Period size: 121 Copynumber: 2.2 Consensus size: 122
73850699 NNGAATGATG
* *
73850709 TCCGGGCTAAGTCCCGAAG-GC-TTTGTGCTAAGTGACCATATCCGGACTAAGTTCCGAAGAGCA
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAAGTGACCATATCCGGACAAAGTTCCGAAGAGCA
* * ** *
73850772 TTCGTGCTAGTGATGTATTCGGGCTAAGTCTCGAAGAGCATTCGTGCTAGTGATGTA
66 TTCGTGCTAGTGATATATCCGGGCTAACCCTCGAAGAGCATTCGTGCTAGTGATATA
* * * *
73850829 TCTGGGCTAAGTTCCGAAGAGCATTCGTGCT-AGTGA-TATATCCGGGCCAAAGTTCCGAAGAGC
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAAGTGACCATATCC-GGACAAAGTTCCGAAGAGC
* * * *
73850892 ATTCGTGCTAGTGATATATCCGTGCTAAACCCT-GAAGAGTATTCGTGCTGGTGTTATA
65 ATTCGTGCTAGTGATATATCCGGGCT-AACCCTCGAAGAGCATTCGTGCTAGTGATATA
*
73850950 TCCGGGCTAGGTCCCGAAGAGCA
1 TCCGGGCTAAGTCCCGAAGAGCA
73850973 ATCATGCTGG
Statistics
Matches: 122, Mismatches: 18, Indels: 7
0.83 0.12 0.05
Matches are distributed among these distances:
120 23 0.19
121 88 0.72
122 11 0.09
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (122 bp):
TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAAGTGACCATATCCGGACAAAGTTCCGAAGAGCA
TTCGTGCTAGTGATATATCCGGGCTAACCCTCGAAGAGCATTCGTGCTAGTGATATA
Found at i:73850936 original size:81 final size:81
Alignment explanation
Indices: 73850746--73850956 Score: 257
Period size: 81 Copynumber: 2.6 Consensus size: 81
73850736 CTAAGTGACC
* ** * * *
73850746 ATATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTATTCGGG-CTAAGTCTCGAAGAG
1 ATATCCGGGCTAAGACCCGAAGAGCATTCGTGCTAGTGATATATCCGGGCCAAAGTCTCGAAGAG
73850810 CATTCGTGCTAGTGAT
66 CATTCGTGCTAGTGAT
* * **
73850826 GTATCTGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATATATCCGGGCCAAAGT-TCCGAAGA
1 ATATCCGGGCTAAGACCCGAAGAGCATTCGTGCTAGTGATATATCCGGGCCAAAGTCT-CGAAGA
73850890 GCATTCGTGCTAGTGAT
65 GCATTCGTGCTAGTGAT
* * * *
73850907 ATATCCGTGCTAA-ACCCTGAAGAGTATTCGTGCTGGTGTTATATCCGGGC
1 ATATCCGGGCTAAGACCC-GAAGAGCATTCGTGCTAGTGATATATCCGGGC
73850957 TAGGTCCCGA
Statistics
Matches: 114, Mismatches: 14, Indels: 5
0.86 0.11 0.04
Matches are distributed among these distances:
80 47 0.41
81 67 0.59
ACGTcount: A:0.24, C:0.20, G:0.27, T:0.28
Consensus pattern (81 bp):
ATATCCGGGCTAAGACCCGAAGAGCATTCGTGCTAGTGATATATCCGGGCCAAAGTCTCGAAGAG
CATTCGTGCTAGTGAT
Found at i:73850984 original size:40 final size:40
Alignment explanation
Indices: 73850709--73850972 Score: 309
Period size: 40 Copynumber: 6.6 Consensus size: 40
73850699 NNGAATGATG
* *
73850709 TCCGGGCTAAGTCCCGAAG-GC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCT-AGTGA-TATA
* * *
73850749 TCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTA
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATA
* * *
73850789 TTCGGGCTAAGTCTCGAAGAGCATTCGTGCTAGTGATGTA
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATA
* *
73850829 TCTGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATATA
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATA
* *
73850869 TCCGGGCCAAAGTTCCGAAGAGCATTCGTGCTAGTGATATA
1 TCCGGG-CTAAGTCCCGAAGAGCATTCGTGCTAGTGATATA
* * * * *
73850910 TCCGTGCTAA-ACCCTGAAGAGTATTCGTGCTGGTGTTATA
1 TCCGGGCTAAGTCCC-GAAGAGCATTCGTGCTAGTGATATA
*
73850950 TCCGGGCTAGGTCCCGAAGAGCA
1 TCCGGGCTAAGTCCCGAAGAGCA
73850973 ATCATGCTGG
Statistics
Matches: 192, Mismatches: 27, Indels: 10
0.84 0.12 0.04
Matches are distributed among these distances:
39 2 0.01
40 135 0.70
41 48 0.25
42 7 0.04
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATA
Found at i:73861160 original size:47 final size:47
Alignment explanation
Indices: 73861107--73861226 Score: 134
Period size: 47 Copynumber: 2.5 Consensus size: 47
73861097 GAATTGACGG
* * *
73861107 TTAAGGATACTATGTAAGAACATGTCAAGACATGGCATCGGCATTAA
1 TTAAGGATACCATGTAAGACCATGTCAAGACATGGCATCGGCACTAA
** ** * *
73861154 TTAAGGACT-CCATGTAAGACCACATCAAGATGTGGTATTGGCACTAA
1 TTAAGGA-TACCATGTAAGACCATGTCAAGACATGGCATCGGCACTAA
73861201 TATAAGGATACCATGTAAGACCATGT
1 T-TAAGGATACCATGTAAGACCATGT
73861227 TTGGAACATG
Statistics
Matches: 59, Mismatches: 11, Indels: 5
0.79 0.15 0.07
Matches are distributed among these distances:
47 38 0.64
48 21 0.36
ACGTcount: A:0.37, C:0.17, G:0.21, T:0.26
Consensus pattern (47 bp):
TTAAGGATACCATGTAAGACCATGTCAAGACATGGCATCGGCACTAA
Found at i:73861263 original size:47 final size:47
Alignment explanation
Indices: 73861204--73861319 Score: 205
Period size: 47 Copynumber: 2.5 Consensus size: 47
73861194 GCACTAATAT
*
73861204 AAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGGTAAGAC
1 AAGGATACCATGTAAGACCATGTTTGGAACATGACATTTGGTAAGAC
*
73861251 AAGGATACCATGTAAGACCATGTTTGGAACATGACATTTGGTAAGAT
1 AAGGATACCATGTAAGACCATGTTTGGAACATGACATTTGGTAAGAC
*
73861298 AAGGATATCATGTAAGACCATG
1 AAGGATACCATGTAAGACCATG
73861320 CCAAGGCATG
Statistics
Matches: 66, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
47 66 1.00
ACGTcount: A:0.36, C:0.14, G:0.24, T:0.26
Consensus pattern (47 bp):
AAGGATACCATGTAAGACCATGTTTGGAACATGACATTTGGTAAGAC
Found at i:73861362 original size:54 final size:56
Alignment explanation
Indices: 73861298--73861444 Score: 219
Period size: 54 Copynumber: 2.7 Consensus size: 56
73861288 TTGGTAAGAT
73861298 AAGGATATCATGTAAGACCATGCCAAGGCATGGCATTGATAAGTT-CTATAAGGC-
1 AAGGATATCATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTACTATAAGGCA
* * * *
73861352 AAGGAAATCATGTAAGACCATGTCAAGACATGGCATTGATGAGTTACTATAAGGCA
1 AAGGATATCATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTACTATAAGGCA
**
73861408 AAGG-TCCCATGTAAGACCATGCCAAGGCATGGCATTG
1 AAGGATATCATGTAAGACCATGCCAAGGCATGGCATTG
73861445 GTGAGTTCAT
Statistics
Matches: 82, Mismatches: 9, Indels: 3
0.87 0.10 0.03
Matches are distributed among these distances:
54 41 0.50
55 37 0.45
56 4 0.05
ACGTcount: A:0.35, C:0.18, G:0.24, T:0.22
Consensus pattern (56 bp):
AAGGATATCATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTACTATAAGGCA
Found at i:73861427 original size:55 final size:54
Alignment explanation
Indices: 73861306--73861452 Score: 206
Period size: 55 Copynumber: 2.7 Consensus size: 54
73861296 ATAAGGATAT
* *
73861306 CATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTCTATAAGGCAAGGAAAT
1 CATGTAAGACCATGCCAAGGCATGGCATTGATGAGTTCTATAAGGCAAGGAAAC
* * **
73861360 CATGTAAGACCATGTCAAGACATGGCATTGATGAGTTACTATAAGGCAAAGG-TCC
1 CATGTAAGACCATGCCAAGGCATGGCATTGATGAGTT-CTATAAGGC-AAGGAAAC
*
73861415 CATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTC
1 CATGTAAGACCATGCCAAGGCATGGCATTGATGAGTTC
73861453 ATACCATATG
Statistics
Matches: 82, Mismatches: 9, Indels: 4
0.86 0.09 0.04
Matches are distributed among these distances:
54 35 0.43
55 43 0.52
56 4 0.05
ACGTcount: A:0.33, C:0.18, G:0.25, T:0.23
Consensus pattern (54 bp):
CATGTAAGACCATGCCAAGGCATGGCATTGATGAGTTCTATAAGGCAAGGAAAC
Found at i:73869728 original size:27 final size:27
Alignment explanation
Indices: 73869697--73869874 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
73869687 TAAATTGTAC
73869697 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
73869724 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
73869750 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
73869778 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
73869806 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
73869833 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
73869860 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
73869875 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:73869811 original size:82 final size:81
Alignment explanation
Indices: 73869698--73869853 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
73869688 AAATTGTACA
* *
73869698 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
73869762 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
73869779 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
73869844 TGCGAGTTGA
65 TGCGAATTGA
73869854 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:73869865 original size:82 final size:81
Alignment explanation
Indices: 73869694--73869874 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
73869684 GATTAAATTG
* *
73869694 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
73869759 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
73869775 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
73869839 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
73869857 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
73869875 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:73872318 original size:14 final size:14
Alignment explanation
Indices: 73872299--73872332 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
73872289 ACTTTTTCCA
73872299 CTCTTTTTATTTTG
1 CTCTTTTTATTTTG
* *
73872313 CTCTTTTTCTTTTT
1 CTCTTTTTATTTTG
73872327 CTCTTT
1 CTCTTT
73872333 CAATGGATTG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.03, C:0.21, G:0.03, T:0.74
Consensus pattern (14 bp):
CTCTTTTTATTTTG
Found at i:73874235 original size:14 final size:14
Alignment explanation
Indices: 73874213--73874257 Score: 65
Period size: 14 Copynumber: 3.3 Consensus size: 14
73874203 TTAAAGAAGC
73874213 AACTCATTAAATTA
1 AACTCATTAAATTA
*
73874227 AATTCATTAAA-TA
1 AACTCATTAAATTA
*
73874240 AACTCATTTAATTA
1 AACTCATTAAATTA
73874254 AACT
1 AACT
73874258 AAGATGAGTT
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
13 11 0.41
14 16 0.59
ACGTcount: A:0.49, C:0.13, G:0.00, T:0.38
Consensus pattern (14 bp):
AACTCATTAAATTA
Found at i:73874295 original size:22 final size:22
Alignment explanation
Indices: 73874269--73874338 Score: 60
Period size: 22 Copynumber: 3.3 Consensus size: 22
73874259 AGATGAGTTG
73874269 TATTAATGACCAGCAACTCATT
1 TATTAATGACCAGCAACTCATT
* *
73874291 TATTAA--ACTA--AGA-TGAGTT
1 TATTAATGACCAGCA-ACTCA-TT
73874310 GTATTAATGACCAGCAACTCATT
1 -TATTAATGACCAGCAACTCATT
73874333 TATTAA
1 TATTAA
73874339 ACTAAGAGGC
Statistics
Matches: 36, Mismatches: 4, Indels: 16
0.64 0.07 0.29
Matches are distributed among these distances:
18 3 0.08
19 3 0.08
20 9 0.25
22 15 0.42
23 3 0.08
24 3 0.08
ACGTcount: A:0.39, C:0.16, G:0.11, T:0.34
Consensus pattern (22 bp):
TATTAATGACCAGCAACTCATT
Found at i:73874301 original size:42 final size:42
Alignment explanation
Indices: 73874240--73874345 Score: 203
Period size: 42 Copynumber: 2.5 Consensus size: 42
73874230 TCATTAAATA
73874240 AACTCATTTAATTAAACTAAGATGAGTTGTATTAATGACCAGC
1 AACTCATTT-ATTAAACTAAGATGAGTTGTATTAATGACCAGC
73874283 AACTCATTTATTAAACTAAGATGAGTTGTATTAATGACCAGC
1 AACTCATTTATTAAACTAAGATGAGTTGTATTAATGACCAGC
73874325 AACTCATTTATTAAACTAAGA
1 AACTCATTTATTAAACTAAGA
73874346 GGCTTAAATG
Statistics
Matches: 63, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
42 54 0.86
43 9 0.14
ACGTcount: A:0.41, C:0.14, G:0.12, T:0.33
Consensus pattern (42 bp):
AACTCATTTATTAAACTAAGATGAGTTGTATTAATGACCAGC
Found at i:73886882 original size:27 final size:28
Alignment explanation
Indices: 73886845--73886984 Score: 175
Period size: 27 Copynumber: 5.2 Consensus size: 28
73886835 AGCATGGCTG
* *
73886845 CCAGA-ACAGATA-ATGTGACAGAGTCA
1 CCAGATACAGATATATGTGGCAGAGCCA
*
73886871 CCAGATACAGATA-ATCGCGGCAGAGCCA
1 CCAGATACAGATATAT-GTGGCAGAGCCA
73886899 CCAGA-ACAGATATATGTGGCAGAGCCA
1 CCAGATACAGATATATGTGGCAGAGCCA
*
73886926 CCAGAT-CAGATATTTGTGGCAGAGCCA
1 CCAGATACAGATATATGTGGCAGAGCCA
* *
73886953 CCAGAT-CAGATATTTGTGGCATAGCCA
1 CCAGATACAGATATATGTGGCAGAGCCA
73886980 CCAGA
1 CCAGA
73886985 ACGCTTCCTC
Statistics
Matches: 104, Mismatches: 6, Indels: 7
0.89 0.05 0.06
Matches are distributed among these distances:
26 5 0.05
27 83 0.80
28 16 0.15
ACGTcount: A:0.35, C:0.24, G:0.24, T:0.17
Consensus pattern (28 bp):
CCAGATACAGATATATGTGGCAGAGCCA
Found at i:73888713 original size:26 final size:26
Alignment explanation
Indices: 73888604--73888705 Score: 177
Period size: 26 Copynumber: 3.9 Consensus size: 26
73888594 CATGAAATTC
73888604 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
73888630 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
73888656 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
*
73888682 TTATCATGGAACATTTACCTAACC
1 TTATCATGAAACATTTACCTAACC
73888706 TTTTATCAAT
Statistics
Matches: 74, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 74 1.00
ACGTcount: A:0.36, C:0.25, G:0.06, T:0.32
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:73890508 original size:10 final size:10
Alignment explanation
Indices: 73890493--73890519 Score: 54
Period size: 10 Copynumber: 2.7 Consensus size: 10
73890483 TAAGTTGAAG
73890493 TTGAGCTGAT
1 TTGAGCTGAT
73890503 TTGAGCTGAT
1 TTGAGCTGAT
73890513 TTGAGCT
1 TTGAGCT
73890520 TGAAGGAGTA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 17 1.00
ACGTcount: A:0.19, C:0.11, G:0.30, T:0.41
Consensus pattern (10 bp):
TTGAGCTGAT
Found at i:73891854 original size:18 final size:17
Alignment explanation
Indices: 73891822--73891855 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
73891812 TTAATTGAGT
73891822 TCATATTAGTTAATAAC
1 TCATATTAGTTAATAAC
*
73891839 TCATCTTAGATTAATAA
1 TCATATTAG-TTAATAA
73891856 ATGAGTTGCT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 8 0.53
18 7 0.47
ACGTcount: A:0.41, C:0.12, G:0.06, T:0.41
Consensus pattern (17 bp):
TCATATTAGTTAATAAC
Found at i:73893978 original size:20 final size:20
Alignment explanation
Indices: 73893931--73893978 Score: 51
Period size: 20 Copynumber: 2.4 Consensus size: 20
73893921 AGTAAGCTCG
73893931 GTTGAGCTCAAACGAGCTGA
1 GTTGAGCTCAAACGAGCTGA
**** *
73893951 AACAAGCTCAAATGAGCTGA
1 GTTGAGCTCAAACGAGCTGA
73893971 GTTGAGCT
1 GTTGAGCT
73893979 GGACGGTGCT
Statistics
Matches: 19, Mismatches: 9, Indels: 0
0.68 0.32 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.33, C:0.19, G:0.27, T:0.21
Consensus pattern (20 bp):
GTTGAGCTCAAACGAGCTGA
Found at i:73896837 original size:8 final size:8
Alignment explanation
Indices: 73896824--73896893 Score: 54
Period size: 8 Copynumber: 8.2 Consensus size: 8
73896814 TTATTTTCTC
73896824 AAAAATTT
1 AAAAATTT
73896832 AAAAATTACT
1 AAAAATT--T
*
73896842 AATAATTT
1 AAAAATTT
*
73896850 AATAAATTG
1 AA-AAATTT
73896859 AAAAA-TT
1 AAAAATTT
73896866 AAATAATTT
1 AAA-AATTT
73896875 AATAAAATTT
1 -A-AAAATTT
73896885 -AAAATTT
1 AAAAATTT
73896892 AA
1 AA
73896894 GAGGTCTCAC
Statistics
Matches: 50, Mismatches: 4, Indels: 16
0.71 0.06 0.23
Matches are distributed among these distances:
7 11 0.22
8 16 0.32
9 8 0.16
10 13 0.26
11 2 0.04
ACGTcount: A:0.60, C:0.01, G:0.01, T:0.37
Consensus pattern (8 bp):
AAAAATTT
Found at i:73896876 original size:25 final size:26
Alignment explanation
Indices: 73896826--73896880 Score: 85
Period size: 25 Copynumber: 2.1 Consensus size: 26
73896816 ATTTTCTCAA
*
73896826 AAATTTAAAAATTACTAATAATTTAAT
1 AAATTGAAAAATTAC-AATAATTTAAT
73896853 AAATTGAAAAATTA-AATAATTTAAT
1 AAATTGAAAAATTACAATAATTTAAT
73896878 AAA
1 AAA
73896881 ATTTAAAATT
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
25 14 0.52
27 13 0.48
ACGTcount: A:0.60, C:0.02, G:0.02, T:0.36
Consensus pattern (26 bp):
AAATTGAAAAATTACAATAATTTAAT
Found at i:73896888 original size:25 final size:26
Alignment explanation
Indices: 73896825--73896890 Score: 82
Period size: 25 Copynumber: 2.5 Consensus size: 26
73896815 TATTTTCTCA
73896825 AAAATTTAAAAATTACTAATAATTTAAT
1 AAAATTT-AAAATTAC-AATAATTTAAT
*
73896853 -AAATTGAAAAATTA-AATAATTTAAT
1 AAAATT-TAAAATTACAATAATTTAAT
73896878 AAAATTTAAAATT
1 AAAATTTAAAATT
73896891 TAAGAGGTCT
Statistics
Matches: 34, Mismatches: 2, Indels: 7
0.79 0.05 0.16
Matches are distributed among these distances:
25 17 0.50
26 5 0.15
27 12 0.35
ACGTcount: A:0.59, C:0.02, G:0.02, T:0.38
Consensus pattern (26 bp):
AAAATTTAAAATTACAATAATTTAAT
Found at i:73896893 original size:17 final size:18
Alignment explanation
Indices: 73896825--73896886 Score: 65
Period size: 18 Copynumber: 3.5 Consensus size: 18
73896815 TATTTTCTCA
*
73896825 AAAATTTAA-AAATTACT
1 AAAATTTAATAAATTAAT
*
73896842 AATAATTTAATAAATTGA-
1 AA-AATTTAATAAATTAAT
* *
73896860 AAAATTAAATAATTTAAT
1 AAAATTTAATAAATTAAT
73896878 AAAATTTAA
1 AAAATTTAA
73896887 AATTTAAGAG
Statistics
Matches: 36, Mismatches: 6, Indels: 5
0.77 0.13 0.11
Matches are distributed among these distances:
17 14 0.39
18 17 0.47
19 5 0.14
ACGTcount: A:0.60, C:0.02, G:0.02, T:0.37
Consensus pattern (18 bp):
AAAATTTAATAAATTAAT
Found at i:73906506 original size:23 final size:22
Alignment explanation
Indices: 73906455--73906506 Score: 54
Period size: 23 Copynumber: 2.3 Consensus size: 22
73906445 CCTCGTCTTT
*
73906455 TTCTTTTGTTTCTTTTTCTAAC
1 TTCTTTTCTTTCTTTTTCTAAC
73906477 -TCATTTTCTCTTCTTTCTTC-AAC
1 TTC-TTTTCT-TTCTTT-TTCTAAC
73906500 TTCTTTT
1 TTCTTTT
73906507 TCAATTTTCT
Statistics
Matches: 25, Mismatches: 1, Indels: 7
0.76 0.03 0.21
Matches are distributed among these distances:
21 2 0.08
22 5 0.20
23 13 0.52
24 5 0.20
ACGTcount: A:0.10, C:0.23, G:0.02, T:0.65
Consensus pattern (22 bp):
TTCTTTTCTTTCTTTTTCTAAC
Found at i:73907831 original size:18 final size:19
Alignment explanation
Indices: 73907800--73907841 Score: 50
Period size: 18 Copynumber: 2.2 Consensus size: 19
73907790 TTTTTTTAAA
*
73907800 TTTTTATTGAATTTCGTCTT
1 TTTTTATT-AATTTCGACTT
*
73907820 TTTTTATT-ATTTTGACTT
1 TTTTTATTAATTTCGACTT
73907838 TTTT
1 TTTT
73907842 GACTGATTTT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
18 12 0.60
20 8 0.40
ACGTcount: A:0.14, C:0.07, G:0.07, T:0.71
Consensus pattern (19 bp):
TTTTTATTAATTTCGACTT
Found at i:73916129 original size:26 final size:26
Alignment explanation
Indices: 73916041--73916180 Score: 173
Period size: 26 Copynumber: 5.5 Consensus size: 26
73916031 ATATCTGGAT
*
73916041 GCAT-AGCCTCTTTT-AAT-AACTTGG
1 GCATAAGCC-CTTTTCAATAAACTGGG
**
73916065 GCA-AAGCCCTTTTCGGTAAACTGGG
1 GCATAAGCCCTTTTCAATAAACTGGG
73916090 GCA-AAGCCCTTTTCAATAAACTGGG
1 GCATAAGCCCTTTTCAATAAACTGGG
** *
73916115 GCATAAGCCCTTTTCGGTAAACTAGG
1 GCATAAGCCCTTTTCAATAAACTGGG
*
73916141 GCATAAGCCCTTTTCAATAAACTGAG
1 GCATAAGCCCTTTTCAATAAACTGGG
73916167 GCATAAGCCCTTTT
1 GCATAAGCCCTTTT
73916181 GCACTTCCTC
Statistics
Matches: 100, Mismatches: 12, Indels: 6
0.85 0.10 0.05
Matches are distributed among these distances:
23 5 0.05
24 8 0.08
25 32 0.32
26 55 0.55
ACGTcount: A:0.28, C:0.24, G:0.20, T:0.29
Consensus pattern (26 bp):
GCATAAGCCCTTTTCAATAAACTGGG
Found at i:73916170 original size:52 final size:51
Alignment explanation
Indices: 73916041--73916180 Score: 200
Period size: 52 Copynumber: 2.8 Consensus size: 51
73916031 ATATCTGGAT
*
73916041 GCAT-AGCCTCTTTT-AAT-AACTTGGGCA-AAGCCCTTTTCGGTAAACTGGG
1 GCATAAGCC-CTTTTCAATAAAC-TGGGCATAAGCCCTTTTCGGTAAACTAGG
73916090 GCA-AAGCCCTTTTCAATAAACTGGGGCATAAGCCCTTTTCGGTAAACTAGG
1 GCATAAGCCCTTTTCAATAAACT-GGGCATAAGCCCTTTTCGGTAAACTAGG
73916141 GCATAAGCCCTTTTCAATAAACTGAGGCATAAGCCCTTTT
1 GCATAAGCCCTTTTCAATAAACTG-GGCATAAGCCCTTTT
73916181 GCACTTCCTC
Statistics
Matches: 83, Mismatches: 1, Indels: 11
0.87 0.01 0.12
Matches are distributed among these distances:
48 5 0.06
49 11 0.13
50 8 0.10
51 25 0.30
52 34 0.41
ACGTcount: A:0.28, C:0.24, G:0.20, T:0.29
Consensus pattern (51 bp):
GCATAAGCCCTTTTCAATAAACTGGGCATAAGCCCTTTTCGGTAAACTAGG
Found at i:73916255 original size:20 final size:20
Alignment explanation
Indices: 73916230--73916315 Score: 97
Period size: 20 Copynumber: 4.3 Consensus size: 20
73916220 TTATGAATTC
73916230 ATCATGAGCACT-TCATACAT
1 ATCATGAGCA-TATCATACAT
*
73916250 ATCATGTGCATATCATACAT
1 ATCATGAGCATATCATACAT
73916270 ATCAT-ATGCATATCATACAT
1 ATCATGA-GCATATCATACAT
* *
73916290 ATCATGTGCATAACATATCA-
1 ATCATGAGCATATCATA-CAT
73916310 ATCATG
1 ATCATG
73916316 TATATCATAT
Statistics
Matches: 58, Mismatches: 4, Indels: 8
0.83 0.06 0.11
Matches are distributed among these distances:
19 1 0.02
20 55 0.95
21 2 0.03
ACGTcount: A:0.37, C:0.21, G:0.09, T:0.33
Consensus pattern (20 bp):
ATCATGAGCATATCATACAT
Found at i:73916261 original size:11 final size:10
Alignment explanation
Indices: 73916247--73916301 Score: 51
Period size: 11 Copynumber: 5.4 Consensus size: 10
73916237 GCACTTCATA
73916247 CATATCATGTG
1 CATATCAT-TG
*
73916258 CATATCA-TA
1 CATATCATTG
73916267 CATATCATATG
1 CATATCAT-TG
*
73916278 CATATCA-TA
1 CATATCATTG
73916287 CATATCATGTG
1 CATATCAT-TG
73916298 CATA
1 CATA
73916302 ACATATCAAT
Statistics
Matches: 36, Mismatches: 4, Indels: 8
0.75 0.08 0.17
Matches are distributed among these distances:
9 16 0.44
11 20 0.56
ACGTcount: A:0.36, C:0.20, G:0.09, T:0.35
Consensus pattern (10 bp):
CATATCATTG
Found at i:73916270 original size:9 final size:9
Alignment explanation
Indices: 73916242--73916294 Score: 61
Period size: 9 Copynumber: 5.4 Consensus size: 9
73916232 CATGAGCACT
73916242 TCATACATA
1 TCATACATA
*
73916251 TCATGTGCATA
1 TCA--TACATA
73916262 TCATACATA
1 TCATACATA
73916271 TCATATGCATA
1 TCATA--CATA
73916282 TCATACATA
1 TCATACATA
73916291 TCAT
1 TCAT
73916295 GTGCATAACA
Statistics
Matches: 38, Mismatches: 2, Indels: 8
0.79 0.04 0.17
Matches are distributed among these distances:
9 21 0.55
11 17 0.45
ACGTcount: A:0.38, C:0.21, G:0.06, T:0.36
Consensus pattern (9 bp):
TCATACATA
Found at i:73916274 original size:40 final size:41
Alignment explanation
Indices: 73916230--73916315 Score: 117
Period size: 40 Copynumber: 2.1 Consensus size: 41
73916220 TTATGAATTC
*
73916230 ATCATGA-GCACT-TCATACATATCATGTGCATATCATA-CA
1 ATCATGATGCA-TATCATACATATCATGTGCATAACATATCA
73916269 TATCAT-ATGCATATCATACATATCATGTGCATAACATATCA
1 -ATCATGATGCATATCATACATATCATGTGCATAACATATCA
73916310 ATCATG
1 ATCATG
73916316 TATATCATAT
Statistics
Matches: 41, Mismatches: 1, Indels: 7
0.84 0.02 0.14
Matches are distributed among these distances:
39 2 0.05
40 37 0.90
41 2 0.05
ACGTcount: A:0.37, C:0.21, G:0.09, T:0.33
Consensus pattern (41 bp):
ATCATGATGCATATCATACATATCATGTGCATAACATATCA
Found at i:73916316 original size:20 final size:20
Alignment explanation
Indices: 73916242--73916324 Score: 118
Period size: 20 Copynumber: 4.2 Consensus size: 20
73916232 CATGAGCACT
73916242 TCATACATATCATGTGCATA
1 TCATACATATCATGTGCATA
*
73916262 TCATACATATCATATGCATA
1 TCATACATATCATGTGCATA
73916282 TCATACATATCATGTGCATA
1 TCATACATATCATGTGCATA
*
73916302 ACATATCA-ATCATGT--ATA
1 TCATA-CATATCATGTGCATA
73916320 TCATA
1 TCATA
73916325 TCCCACGTAT
Statistics
Matches: 58, Mismatches: 4, Indels: 4
0.88 0.06 0.06
Matches are distributed among these distances:
18 7 0.12
20 49 0.84
21 2 0.03
ACGTcount: A:0.39, C:0.19, G:0.07, T:0.35
Consensus pattern (20 bp):
TCATACATATCATGTGCATA
Found at i:73918569 original size:27 final size:27
Alignment explanation
Indices: 73918539--73918690 Score: 223
Period size: 27 Copynumber: 5.6 Consensus size: 27
73918529 ATATTAAGTC
* *
73918539 CGCACACTCAGTGCTATATAGTCAACT
1 CGCACACTTAGTGCTACATAGTCAACT
*
73918566 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAGTC-AACT
* *
73918594 CGCACACTTAGTGCTACATAGTTAATT
1 CGCACACTTAGTGCTACATAGTCAACT
* *
73918621 CGCACACTTAGTGCAACATAGTCAATT
1 CGCACACTTAGTGCTACATAGTCAACT
73918648 CGCACACTTAGTGCTACATAGTCCAACT
1 CGCACACTTAGTGCTACATAGT-CAACT
73918676 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
73918691 GTACAATTTA
Statistics
Matches: 113, Mismatches: 10, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
27 69 0.61
28 44 0.39
ACGTcount: A:0.30, C:0.28, G:0.14, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAACT
Found at i:73918607 original size:55 final size:54
Alignment explanation
Indices: 73918539--73918690 Score: 223
Period size: 55 Copynumber: 2.8 Consensus size: 54
73918529 ATATTAAGTC
* *
73918539 CGCACACTCAGTGCTATATAGTCAACTCGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAATC-AACT
* * * * *
73918594 CGCACACTTAGTGCTACATAGTTAATTCGCACACTTAGTGCAACATAGTCAATT
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAATCAACT
73918648 CGCACACTTAGTGCTACATAGTCCAACTCGCACACTTAGTGCT
1 CGCACACTTAGTGCTACATAGT-CAACTCGCACACTTAGTGCT
73918691 GTACAATTTA
Statistics
Matches: 86, Mismatches: 10, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
54 25 0.29
55 61 0.71
ACGTcount: A:0.30, C:0.28, G:0.14, T:0.27
Consensus pattern (54 bp):
CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAATCAACT
Found at i:73918676 original size:82 final size:82
Alignment explanation
Indices: 73918539--73918690 Score: 250
Period size: 82 Copynumber: 1.9 Consensus size: 82
73918529 ATATTAAGTC
* *
73918539 CGCACACTCAGTGCTATATAGTCAACTCGCACACTTAGTGCTACATAATCAAACTCGCACACTTA
1 CGCACACTCAGTGCAACATAGTCAACTCGCACACTTAGTGCTACATAATCAAACTCGCACACTTA
73918604 GTGCTACATAGTTAATT
66 GTGCTACATAGTTAATT
* * * *
73918621 CGCACACTTAGTGCAACATAGTCAATTCGCACACTTAGTGCTACATAGTCCAACTCGCACACTTA
1 CGCACACTCAGTGCAACATAGTCAACTCGCACACTTAGTGCTACATAATCAAACTCGCACACTTA
73918686 GTGCT
66 GTGCT
73918691 GTACAATTTA
Statistics
Matches: 64, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
82 64 1.00
ACGTcount: A:0.30, C:0.28, G:0.14, T:0.27
Consensus pattern (82 bp):
CGCACACTCAGTGCAACATAGTCAACTCGCACACTTAGTGCTACATAATCAAACTCGCACACTTA
GTGCTACATAGTTAATT
Found at i:73919217 original size:21 final size:21
Alignment explanation
Indices: 73919185--73919227 Score: 52
Period size: 22 Copynumber: 2.0 Consensus size: 21
73919175 TTGGTCATCA
*
73919185 TTTTGTCATTCA-ACACATTT
1 TTTTGTCATTCATAAACATTT
*
73919205 TTTTTTCACTTCATAAACATTT
1 TTTTGTCA-TTCATAAACATTT
73919227 T
1 T
73919228 GACCGTACAC
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
20 7 0.37
21 4 0.21
22 8 0.42
ACGTcount: A:0.26, C:0.19, G:0.02, T:0.53
Consensus pattern (21 bp):
TTTTGTCATTCATAAACATTT
Found at i:73921645 original size:27 final size:27
Alignment explanation
Indices: 73921606--73921751 Score: 143
Period size: 27 Copynumber: 5.4 Consensus size: 27
73921596 TGGATAAGTT
*
73921606 GTAGAATTACCGAAATACTCTTGTAGG
1 GTAGAATTACCGAAATACCCTTGTAGG
*
73921633 ATAGAATTACCGAAATA-CCTCTGTAGG
1 GTAGAATTACCGAAATACCCT-TGTAGG
* *
73921660 GTAGAATTA-CAAATATACCCCTGTAGG
1 GTAGAATTACCGAA-ATACCCTTGTAGG
* *** *
73921687 ATAGAATTTTTGAAATACCCCTGTAGG
1 GTAGAATTACCGAAATACCCTTGTAGG
* * *
73921714 GTAGAATTATCGAGATACCCTTGTGGG
1 GTAGAATTACCGAAATACCCTTGTAGG
*
73921741 GTAAAATTACC
1 GTAGAATTACC
73921752 ATTTTACCCT
Statistics
Matches: 98, Mismatches: 17, Indels: 8
0.80 0.14 0.07
Matches are distributed among these distances:
26 5 0.05
27 89 0.91
28 4 0.04
ACGTcount: A:0.34, C:0.16, G:0.21, T:0.29
Consensus pattern (27 bp):
GTAGAATTACCGAAATACCCTTGTAGG
Found at i:73922500 original size:31 final size:32
Alignment explanation
Indices: 73922462--73922523 Score: 90
Period size: 31 Copynumber: 2.0 Consensus size: 32
73922452 CTCGCTGCAA
* *
73922462 TCTGGTGGCTTCGCCAC-ATATATATATCTGT
1 TCTGGTGGCCTAGCCACAATATATATATCTGT
*
73922493 TCTGGTGGCCTAGCCACAATATCTATATCTG
1 TCTGGTGGCCTAGCCACAATATATATATCTG
73922524 GTGACTTCAG
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
31 15 0.56
32 12 0.44
ACGTcount: A:0.21, C:0.24, G:0.19, T:0.35
Consensus pattern (32 bp):
TCTGGTGGCCTAGCCACAATATATATATCTGT
Found at i:73922525 original size:27 final size:26
Alignment explanation
Indices: 73922485--73922543 Score: 66
Period size: 27 Copynumber: 2.2 Consensus size: 26
73922475 CCACATATAT
* *
73922485 ATATCTGTTCTGGTGGCCT-AGCCACA
1 ATATCTATTCTGGTGACCTCAG-CACA
*
73922511 ATATCTATATCTGGTGACTTCAGCACA
1 ATATCTAT-TCTGGTGACCTCAGCACA
73922538 ATATCT
1 ATATCT
73922544 GGCAGCCTCG
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
26 7 0.25
27 19 0.68
28 2 0.07
ACGTcount: A:0.25, C:0.24, G:0.17, T:0.34
Consensus pattern (26 bp):
ATATCTATTCTGGTGACCTCAGCACA
Found at i:73923555 original size:27 final size:27
Alignment explanation
Indices: 73923525--73923721 Score: 274
Period size: 27 Copynumber: 7.3 Consensus size: 27
73923515 TTATTTACTT
73923525 GTAAAATGA-TCGAAATACCCCCATAGG
1 GTAAAATGACT-GAAATACCCCCATAGG
* *
73923552 GTAAAATGACTGAAATACCCCTATATG
1 GTAAAATGACTGAAATACCCCCATAGG
* *
73923579 GTAAAATGA-TCAAAATACCCCCATAGA
1 GTAAAATGACT-GAAATACCCCCATAGG
73923606 GTAAAATGACTGAAATACCCCCATAGG
1 GTAAAATGACTGAAATACCCCCATAGG
*
73923633 GTAAAATGACTAAAATA-CCCCATAGG
1 GTAAAATGACTGAAATACCCCCATAGG
*
73923659 GTAATATGACTGAAATACCCCCATAGG
1 GTAAAATGACTGAAATACCCCCATAGG
* * *
73923686 GTAAAATGACCGAAATACCCCTATAAG
1 GTAAAATGACTGAAATACCCCCATAGG
73923713 GTAAAATGA
1 GTAAAATGA
73923722 TTATTTTGCC
Statistics
Matches: 151, Mismatches: 15, Indels: 8
0.87 0.09 0.05
Matches are distributed among these distances:
26 25 0.17
27 124 0.82
28 2 0.01
ACGTcount: A:0.43, C:0.20, G:0.16, T:0.20
Consensus pattern (27 bp):
GTAAAATGACTGAAATACCCCCATAGG
Found at i:73923703 original size:80 final size:81
Alignment explanation
Indices: 73923525--73923721 Score: 290
Period size: 80 Copynumber: 2.4 Consensus size: 81
73923515 TTATTTACTT
* * *
73923525 GTAAAATGATCGAAATACCCCCATAGGGTAAAATGACTGAAATACCCCTATATGGTAAAATGATC
1 GTAAAATGACCGAAATACCCCCATAGGGTAAAATGACTAAAATACCCCTATAGGGTAAAATGATC
73923590 AAAATACCCCCATAGA
66 AAAATACCCCCATAGA
* *
73923606 GTAAAATGACTGAAATACCCCCATAGGGTAAAATGACTAAAATACCCC-ATAGGGTAATATGA-C
1 GTAAAATGACCGAAATACCCCCATAGGGTAAAATGACTAAAATACCCCTATAGGGTAAAATGATC
* *
73923669 TGAAATACCCCCATAGG
66 -AAAATACCCCCATAGA
* *
73923686 GTAAAATGACCGAAATACCCCTATAAGGTAAAATGA
1 GTAAAATGACCGAAATACCCCCATAGGGTAAAATGA
73923722 TTATTTTGCC
Statistics
Matches: 105, Mismatches: 10, Indels: 3
0.89 0.08 0.03
Matches are distributed among these distances:
79 1 0.01
80 59 0.56
81 45 0.43
ACGTcount: A:0.43, C:0.20, G:0.16, T:0.20
Consensus pattern (81 bp):
GTAAAATGACCGAAATACCCCCATAGGGTAAAATGACTAAAATACCCCTATAGGGTAAAATGATC
AAAATACCCCCATAGA
Found at i:73923744 original size:27 final size:26
Alignment explanation
Indices: 73923712--73923903 Score: 170
Period size: 27 Copynumber: 7.1 Consensus size: 26
73923702 ACCCCTATAA
*
73923712 GGTAAAATGATTATTTTGCCTTAATGT
1 GGTAAAATGATGATTTTGCCTT-ATGT
* *
73923739 GTTAAAATGACGATTTTGCCTTTATGT
1 GGTAAAATGATGATTTTGCC-TTATGT
* *
73923766 GATAAAATGATGGTTTTGCCCTTATGT
1 GGTAAAATGATGATTTTG-CCTTATGT
* * * *
73923793 GGCAAAATAACTGTTTTTCCCTTATGT
1 GGTAAAATGA-TGATTTTGCCTTATGT
* * *
73923820 GTTAAAATGACGGTTTTGCCCTTATGT
1 GGTAAAATGATGATTTTG-CCTTATGT
*
73923847 GGTAAAATGATGATTTTGCCCTTATGA
1 GGTAAAATGATGATTTTG-CCTTATGT
* *
73923874 GGTAAAATAACT-ATTTTTCCCTTATGT
1 GGTAAAATGA-TGA-TTTTGCCTTATGT
73923901 GGT
1 GGT
73923904 TGGATGACTA
Statistics
Matches: 135, Mismatches: 24, Indels: 12
0.79 0.14 0.07
Matches are distributed among these distances:
26 5 0.04
27 115 0.85
28 15 0.11
ACGTcount: A:0.27, C:0.12, G:0.19, T:0.42
Consensus pattern (26 bp):
GGTAAAATGATGATTTTGCCTTATGT
Found at i:73923774 original size:54 final size:54
Alignment explanation
Indices: 73923714--73923930 Score: 197
Period size: 54 Copynumber: 4.0 Consensus size: 54
73923704 CCCTATAAGG
** * *
73923714 TAAAATGATTATTTTG-CCTTAATGTGTTAAAATGACGATTTTGCCTTTATGTGA
1 TAAAATGACGATTTTGCCCTT-ATGTGGTAAAATGACGATTTTGCCCTTATGTGA
* * * * * *
73923768 TAAAATGATGGTTTTGCCCTTATGTGGCAAAATAACTG-TTTTTCCCTTATGTGT
1 TAAAATGACGATTTTGCCCTTATGTGGTAAAATGAC-GATTTTGCCCTTATGTGA
* * * *
73923822 TAAAATGACGGTTTTGCCCTTATGTGGTAAAATGATGATTTTGCCCTTATGAGG
1 TAAAATGACGATTTTGCCCTTATGTGGTAAAATGACGATTTTGCCCTTATGTGA
* * * *** *
73923876 TAAAATAACTATTTTTCCCTTATGTGGTTGGATGACTATTTTG-CCTCTATGTGA
1 TAAAATGACGATTTTGCCCTTATGTGGTAAAATGACGATTTTGCCCT-TATGTGA
73923930 T
1 T
73923931 GTATGTTTAT
Statistics
Matches: 133, Mismatches: 26, Indels: 8
0.80 0.16 0.05
Matches are distributed among these distances:
53 4 0.03
54 124 0.93
55 5 0.04
ACGTcount: A:0.26, C:0.13, G:0.19, T:0.42
Consensus pattern (54 bp):
TAAAATGACGATTTTGCCCTTATGTGGTAAAATGACGATTTTGCCCTTATGTGA
Found at i:73923821 original size:81 final size:81
Alignment explanation
Indices: 73923725--73923930 Score: 279
Period size: 81 Copynumber: 2.5 Consensus size: 81
73923715 AAAATGATTA
* *
73923725 TTTTGCCTTAATGTGTTAAAATGACGATTTTGCCTTTATGTGATAAAATGATGGTTTTGCCCTTA
1 TTTTCCCTT-ATGTGTTAAAATGACGATTTTGCCTTTATGTGATAAAATGATGATTTTGCCCTTA
* *
73923790 TGTGGCAAAATAACTGT
65 TGAGGCAAAATAACTAT
* * *
73923807 TTTTCCCTTATGTGTTAAAATGACGGTTTTGCCCTTATGTGGTAAAATGATGATTTTGCCCTTAT
1 TTTTCCCTTATGTGTTAAAATGACGATTTTGCCTTTATGTGATAAAATGATGATTTTGCCCTTAT
*
73923872 GAGGTAAAATAACTAT
66 GAGGCAAAATAACTAT
** * *
73923888 TTTTCCCTTATGTGGTT-GGATGACTATTTTGCCTCTATGTGAT
1 TTTTCCCTTATGT-GTTAAAATGACGATTTTGCCTTTATGTGAT
73923931 GTATGTTTAT
Statistics
Matches: 108, Mismatches: 15, Indels: 3
0.86 0.12 0.02
Matches are distributed among these distances:
81 97 0.90
82 11 0.10
ACGTcount: A:0.24, C:0.14, G:0.19, T:0.43
Consensus pattern (81 bp):
TTTTCCCTTATGTGTTAAAATGACGATTTTGCCTTTATGTGATAAAATGATGATTTTGCCCTTAT
GAGGCAAAATAACTAT
Found at i:73930951 original size:17 final size:17
Alignment explanation
Indices: 73930929--73930963 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
73930919 CTTTTGTAAC
73930929 CTCTTGTAAAAAGAAAA
1 CTCTTGTAAAAAGAAAA
73930946 CTCTTGTAAAAAGAAAA
1 CTCTTGTAAAAAGAAAA
73930963 C
1 C
73930964 GAGAAAAGAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.51, C:0.14, G:0.11, T:0.23
Consensus pattern (17 bp):
CTCTTGTAAAAAGAAAA
Found at i:73930976 original size:14 final size:14
Alignment explanation
Indices: 73930954--73930991 Score: 51
Period size: 13 Copynumber: 2.7 Consensus size: 14
73930944 AACTCTTGTA
*
73930954 AAAAGAAAACGA-G
1 AAAAGAAAAAGATG
73930967 AAAAGAAAAAGATG
1 AAAAGAAAAAGATG
73930981 AAAAGCAAAAA
1 AAAAG-AAAAA
73930992 AAATACCAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
13 11 0.50
14 6 0.27
15 5 0.23
ACGTcount: A:0.74, C:0.05, G:0.18, T:0.03
Consensus pattern (14 bp):
AAAAGAAAAAGATG
Found at i:73931126 original size:12 final size:12
Alignment explanation
Indices: 73931111--73931147 Score: 56
Period size: 12 Copynumber: 3.1 Consensus size: 12
73931101 AAACAAAATA
73931111 AGATTGAAAAAG
1 AGATTGAAAAAG
*
73931123 AGATTGAAGAAG
1 AGATTGAAAAAG
*
73931135 AGATAGAAAAAG
1 AGATTGAAAAAG
73931147 A
1 A
73931148 AAAAGAGTTC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
12 22 1.00
ACGTcount: A:0.59, C:0.00, G:0.27, T:0.14
Consensus pattern (12 bp):
AGATTGAAAAAG
Found at i:73935736 original size:13 final size:14
Alignment explanation
Indices: 73935718--73935754 Score: 58
Period size: 13 Copynumber: 2.7 Consensus size: 14
73935708 ACCTCTTGTA
*
73935718 AAAAGAAAACGA-G
1 AAAAGAAAAAGATG
73935731 AAAAGAAAAAGATG
1 AAAAGAAAAAGATG
73935745 AAAAGAAAAA
1 AAAAGAAAAA
73935755 AGAGATCAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
13 11 0.50
14 11 0.50
ACGTcount: A:0.76, C:0.03, G:0.19, T:0.03
Consensus pattern (14 bp):
AAAAGAAAAAGATG
Found at i:73935740 original size:14 final size:13
Alignment explanation
Indices: 73935718--73935759 Score: 57
Period size: 13 Copynumber: 3.1 Consensus size: 13
73935708 ACCTCTTGTA
*
73935718 AAAAGAAAACGAG
1 AAAAGAAAAAGAG
73935731 AAAAGAAAAAGATG
1 AAAAGAAAAAGA-G
73935745 AAAAGAAAAAAGAG
1 AAAAG-AAAAAGAG
73935759 A
1 A
73935760 TCAAAAGAAA
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
13 11 0.42
14 8 0.31
15 7 0.27
ACGTcount: A:0.74, C:0.02, G:0.21, T:0.02
Consensus pattern (13 bp):
AAAAGAAAAAGAG
Found at i:73935765 original size:17 final size:17
Alignment explanation
Indices: 73935736--73935775 Score: 55
Period size: 17 Copynumber: 2.4 Consensus size: 17
73935726 ACGAGAAAAG
*
73935736 AAAA-AGATGAAAAGAA
1 AAAAGAGATCAAAAGAA
73935752 AAAAGAGATCAAAAGAA
1 AAAAGAGATCAAAAGAA
*
73935769 AAGAGAG
1 AAAAGAG
73935776 GCAAGAAAAG
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
16 4 0.19
17 17 0.81
ACGTcount: A:0.70, C:0.03, G:0.23, T:0.05
Consensus pattern (17 bp):
AAAAGAGATCAAAAGAA
Found at i:73935770 original size:15 final size:15
Alignment explanation
Indices: 73935731--73935774 Score: 54
Period size: 17 Copynumber: 2.9 Consensus size: 15
73935721 AGAAAACGAG
*
73935731 AAAAGAAAA-AGATG
1 AAAAGAAAAGAGATC
73935745 AAAAGAAAAAAGAGATC
1 AAAAG--AAAAGAGATC
73935762 AAAAGAAAAGAGA
1 AAAAGAAAAGAGA
73935775 GGCAAGAAAA
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
14 5 0.19
15 8 0.31
16 4 0.15
17 9 0.35
ACGTcount: A:0.73, C:0.02, G:0.20, T:0.05
Consensus pattern (15 bp):
AAAAGAAAAGAGATC
Done.