Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr9
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 91122320
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2661692 characters in sequence are not A, C, G, or T
File 226 of 279
Found at i:73936449 original size:22 final size:22
Alignment explanation
Indices: 73936424--73936468 Score: 81
Period size: 22 Copynumber: 2.0 Consensus size: 22
73936414 ATATATGTGA
73936424 TAAAATTTGTCCACATAAAAAT
1 TAAAATTTGTCCACATAAAAAT
*
73936446 TAAAATTTTTCCACATAAAAAT
1 TAAAATTTGTCCACATAAAAAT
73936468 T
1 T
73936469 TTGATGTGTT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.49, C:0.13, G:0.02, T:0.36
Consensus pattern (22 bp):
TAAAATTTGTCCACATAAAAAT
Found at i:73937994 original size:10 final size:10
Alignment explanation
Indices: 73937978--73938012 Score: 52
Period size: 10 Copynumber: 3.5 Consensus size: 10
73937968 AGCTCAATTT
73937978 AGCTCGTTTG
1 AGCTCGTTTG
* *
73937988 AGTTCGTTTC
1 AGCTCGTTTG
73937998 AGCTCGTTTG
1 AGCTCGTTTG
73938008 AGCTC
1 AGCTC
73938013 AACCAAGCTT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
10 21 1.00
ACGTcount: A:0.11, C:0.23, G:0.26, T:0.40
Consensus pattern (10 bp):
AGCTCGTTTG
Found at i:73943506 original size:200 final size:200
Alignment explanation
Indices: 73943156--73943523 Score: 718
Period size: 200 Copynumber: 1.8 Consensus size: 200
73943146 GCGAAATATT
*
73943156 AGGGGTGAAAATGTAATTTACCCATTTATGCGTTATTAGACTAAATTGAATGAAAATATGTTAAA
1 AGGGGTAAAAATGTAATTTACCCATTTATGCGTTATTAGACTAAATTGAATGAAAATATGTTAAA
*
73943221 ATGAGATTTATTTGAATATGTTAAGATCAAGAAACCAAGGAATTGGATTTAGATCGGGGAAAATC
66 ATGAGATTTATTTGAATATGTTAAGATCAAGAAACCAAGGAATTGGATTTAGATCAGGGAAAATC
73943286 GAAAGTAGTTGAGTAGCCGATCATTTAGTCGACGACATCCGAAGAAAGTTTATAAGCAATTAGAT
131 GAAAGTAGTTGAGTAGCCGATCATTTAGTCGACGACATCCGAAGAAAGTTTATAAGCAATTAGAT
73943351 ATTAA
196 ATTAA
73943356 AGGGGTAAAAATGTAATTTACCCATTTATGCGTTATTAGACTAAATTGAATGAAAATATGTTAAA
1 AGGGGTAAAAATGTAATTTACCCATTTATGCGTTATTAGACTAAATTGAATGAAAATATGTTAAA
73943421 ATGAGATTTATTTGAATATGTTAAGATCAAGAAACCAAGGAATTGGATTTAGATCAGGGAAAATC
66 ATGAGATTTATTTGAATATGTTAAGATCAAGAAACCAAGGAATTGGATTTAGATCAGGGAAAATC
73943486 GAAAGTAGTTGAGTAGCCGATCATTTAGTCGACGACAT
131 GAAAGTAGTTGAGTAGCCGATCATTTAGTCGACGACAT
73943524 TTGAGATTTA
Statistics
Matches: 166, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
200 166 1.00
ACGTcount: A:0.39, C:0.10, G:0.21, T:0.30
Consensus pattern (200 bp):
AGGGGTAAAAATGTAATTTACCCATTTATGCGTTATTAGACTAAATTGAATGAAAATATGTTAAA
ATGAGATTTATTTGAATATGTTAAGATCAAGAAACCAAGGAATTGGATTTAGATCAGGGAAAATC
GAAAGTAGTTGAGTAGCCGATCATTTAGTCGACGACATCCGAAGAAAGTTTATAAGCAATTAGAT
ATTAA
Found at i:73943601 original size:103 final size:103
Alignment explanation
Indices: 73943422--73943626 Score: 401
Period size: 103 Copynumber: 2.0 Consensus size: 103
73943412 TATGTTAAAA
73943422 TGAGATTTATTTGAATATGTTAAGATCAAGAAACCAAGGAATTGGATTTAGATCAGGGAAAATCG
1 TGAGATTTATTTGAATATGTTAAGATCAAGAAACCAAGGAATTGGATTTAGATCAGGGAAAATCG
73943487 AAAGTAGTTGAGTAGCCGATCATTTAGTCGACGACATT
66 AAAGTAGTTGAGTAGCCGATCATTTAGTCGACGACATT
*
73943525 TGAGATTTATTTGAATATGTTAAGATCAAGAAACCAAGGAATTGGATTTAGATCGGGGAAAATCG
1 TGAGATTTATTTGAATATGTTAAGATCAAGAAACCAAGGAATTGGATTTAGATCAGGGAAAATCG
73943590 AAAGTAGTTGAGTAGCCGATCATTTAGTCGACGACAT
66 AAAGTAGTTGAGTAGCCGATCATTTAGTCGACGACAT
73943627 CCGAAGAAAG
Statistics
Matches: 101, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
103 101 1.00
ACGTcount: A:0.37, C:0.11, G:0.24, T:0.29
Consensus pattern (103 bp):
TGAGATTTATTTGAATATGTTAAGATCAAGAAACCAAGGAATTGGATTTAGATCAGGGAAAATCG
AAAGTAGTTGAGTAGCCGATCATTTAGTCGACGACATT
Found at i:73944898 original size:27 final size:27
Alignment explanation
Indices: 73944867--73945044 Score: 196
Period size: 27 Copynumber: 6.6 Consensus size: 27
73944857 TAAATTGTAC
73944867 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
73944894 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
73944920 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
73944948 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* **
73944976 AGCACTAAGTGTGCGATTTGATTGCGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
73945003 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
73945030 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
73945045 GACTCAATAT
Statistics
Matches: 127, Mismatches: 21, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
27 104 0.82
28 23 0.18
ACGTcount: A:0.26, C:0.15, G:0.29, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:73945035 original size:82 final size:81
Alignment explanation
Indices: 73944864--73945044 Score: 222
Period size: 82 Copynumber: 2.2 Consensus size: 81
73944854 GATTAAATTG
*
73944864 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATATGATGCACTAA
73944929 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
73944945 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTG-AT-TGCGTAGCAC
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATATG-AT-GCAC
* **
73945008 TAAGTGTGCGAGTTGATTA
63 TAAGTGTGCGAATTGACCA
* *
73945027 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
73945045 GACTCAATAT
Statistics
Matches: 84, Mismatches: 13, Indels: 5
0.82 0.13 0.05
Matches are distributed among these distances:
80 2 0.02
81 20 0.24
82 62 0.74
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATATGATGCACTAA
GTGTGCGAATTGACCA
Found at i:73946920 original size:27 final size:27
Alignment explanation
Indices: 73946858--73947060 Score: 212
Period size: 27 Copynumber: 7.6 Consensus size: 27
73946848 CACATAGGGG
* * * *
73946858 CAAAACAGTCATTTTACCA-TTAAGGG
1 CAAAACAATCATTTTACCACATAAAGA
*
73946884 C-AAACAATCATTCTACCACATAAAGA
1 CAAAACAATCATTTTACCACATAAAGA
*
73946910 AAAAACAATCATTTTACCACATAAAGA
1 CAAAACAATCATTTTACCACATAAAGA
* * *
73946937 AAAAACAATCATTTTACCACATAAGGG
1 CAAAACAATCATTTTACCACATAAAGA
* * * * *
73946964 CAAAATAGTCATTTTACCATATAGAGG
1 CAAAACAATCATTTTACCACATAAAGA
* ** *
73946991 CAAAATAGCCATTTTACCACATAAGGA
1 CAAAACAATCATTTTACCACATAAAGA
* *
73947018 CAAAACAGTCATTTTACCACATAAAGG
1 CAAAACAATCATTTTACCACATAAAGA
73947045 CAAAACAATCATTTTA
1 CAAAACAATCATTTTA
73947061 TCAATTAGGG
Statistics
Matches: 150, Mismatches: 25, Indels: 3
0.84 0.14 0.02
Matches are distributed among these distances:
25 15 0.10
26 5 0.03
27 130 0.87
ACGTcount: A:0.46, C:0.20, G:0.09, T:0.24
Consensus pattern (27 bp):
CAAAACAATCATTTTACCACATAAAGA
Found at i:73946957 original size:54 final size:54
Alignment explanation
Indices: 73946848--73947060 Score: 259
Period size: 54 Copynumber: 4.0 Consensus size: 54
73946838 TATATATACT
* * * * *
73946848 CACATAGGGGCAAAACAGTCATTTTACCA-TTAAGGGC-AAACAATCATTCTAC
1 CACATAAGGACAAAACAGTCATTTTACCACATAAAGGCAAAACAATCATTTTAC
* * * **
73946900 CACATAAAGAAAAAACAATCATTTTACCACATAAAGAAAAAACAATCATTTTAC
1 CACATAAGGACAAAACAGTCATTTTACCACATAAAGGCAAAACAATCATTTTAC
* * * * * **
73946954 CACATAAGGGCAAAATAGTCATTTTACCATATAGAGGCAAAATAGCCATTTTAC
1 CACATAAGGACAAAACAGTCATTTTACCACATAAAGGCAAAACAATCATTTTAC
73947008 CACATAAGGACAAAACAGTCATTTTACCACATAAAGGCAAAACAATCATTTTA
1 CACATAAGGACAAAACAGTCATTTTACCACATAAAGGCAAAACAATCATTTTA
73947061 TCAATTAGGG
Statistics
Matches: 130, Mismatches: 29, Indels: 2
0.81 0.18 0.01
Matches are distributed among these distances:
52 24 0.18
53 4 0.03
54 102 0.78
ACGTcount: A:0.46, C:0.20, G:0.11, T:0.23
Consensus pattern (54 bp):
CACATAAGGACAAAACAGTCATTTTACCACATAAAGGCAAAACAATCATTTTAC
Found at i:73947011 original size:81 final size:79
Alignment explanation
Indices: 73946859--73947060 Score: 235
Period size: 81 Copynumber: 2.5 Consensus size: 79
73946849 ACATAGGGGC
* * *
73946859 AAAACAGTCATTTTACCA-TTAAGGGCAAACAATCATTCTACCACATAAAGAAAAAACAATCATT
1 AAAACAGTCATTTTACCACATAAGGGCAAA-AATCATTTTACCACATAAAGAAAAAACAACCATT
73946923 TTACCACATAAAGAA
65 TTACCACATAAAGAA
* * * ** * *
73946938 AAAACAATCATTTTACCACATAAGGGCAAAATAGTCATTTTACCATATAGAGGCAAAATAGCCAT
1 AAAACAGTCATTTTACCACATAAGGGCAAAA-A-TCATTTTACCACATAAAGAAAAAACAACCAT
* *
73947003 TTTACCACATAAGGAC
64 TTTACCACATAAAGAA
*
73947019 AAAACAGTCATTTTACCACATAAAGGCAAAACAATCATTTTA
1 AAAACAGTCATTTTACCACATAAGGGC-AAA-AATCATTTTA
73947061 TCAATTAGGG
Statistics
Matches: 104, Mismatches: 14, Indels: 8
0.83 0.11 0.06
Matches are distributed among these distances:
79 18 0.17
80 11 0.11
81 70 0.67
82 4 0.04
83 1 0.01
ACGTcount: A:0.47, C:0.20, G:0.09, T:0.24
Consensus pattern (79 bp):
AAAACAGTCATTTTACCACATAAGGGCAAAAATCATTTTACCACATAAAGAAAAAACAACCATTT
TACCACATAAAGAA
Found at i:73951221 original size:47 final size:47
Alignment explanation
Indices: 73951169--73951261 Score: 186
Period size: 47 Copynumber: 2.0 Consensus size: 47
73951159 CCGTGACTAA
73951169 ATGAGTTTATAATTAATAGGTGAAAAGCTGGAATTTAATTATAAATT
1 ATGAGTTTATAATTAATAGGTGAAAAGCTGGAATTTAATTATAAATT
73951216 ATGAGTTTATAATTAATAGGTGAAAAGCTGGAATTTAATTATAAAT
1 ATGAGTTTATAATTAATAGGTGAAAAGCTGGAATTTAATTATAAAT
73951262 CATTTGAGCC
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
47 46 1.00
ACGTcount: A:0.43, C:0.02, G:0.17, T:0.38
Consensus pattern (47 bp):
ATGAGTTTATAATTAATAGGTGAAAAGCTGGAATTTAATTATAAATT
Found at i:73952572 original size:18 final size:18
Alignment explanation
Indices: 73952549--73952585 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
73952539 GTCCAACAGG
73952549 CCTATGTGTAAATTTCGA
1 CCTATGTGTAAATTTCGA
73952567 CCTATGTGTAAATTTCGA
1 CCTATGTGTAAATTTCGA
73952585 C
1 C
73952586 GCTTCAATTG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.27, C:0.19, G:0.16, T:0.38
Consensus pattern (18 bp):
CCTATGTGTAAATTTCGA
Found at i:73955451 original size:21 final size:21
Alignment explanation
Indices: 73955417--73955458 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
73955407 CATGTTAAGT
*
73955417 GTCAAATTAAAATTATCATGG
1 GTCAAATTAAAATTATAATGG
**
73955438 GTCAAATTGGAATTATAATGG
1 GTCAAATTAAAATTATAATGG
73955459 ACTAAAATAG
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.40, C:0.07, G:0.19, T:0.33
Consensus pattern (21 bp):
GTCAAATTAAAATTATAATGG
Found at i:73966772 original size:43 final size:42
Alignment explanation
Indices: 73966725--73966817 Score: 125
Period size: 42 Copynumber: 2.2 Consensus size: 42
73966715 TCCTAGATGT
* *
73966725 GGTCTTACATGTAATCAAAAATCGATGCC-ACTGTCCCAGGCAG
1 GGTCTTACATGAAATCAAAAA-CGATGCCAAC-GTCCCAGACAG
* *
73966768 GGTCTTACATGAAATCAAATACGATGCCAACGTCCCAGACAT
1 GGTCTTACATGAAATCAAAAACGATGCCAACGTCCCAGACAG
73966810 GGTCTTAC
1 GGTCTTAC
73966818 CGATAACACA
Statistics
Matches: 45, Mismatches: 4, Indels: 3
0.87 0.08 0.06
Matches are distributed among these distances:
42 24 0.53
43 21 0.47
ACGTcount: A:0.31, C:0.26, G:0.19, T:0.24
Consensus pattern (42 bp):
GGTCTTACATGAAATCAAAAACGATGCCAACGTCCCAGACAG
Found at i:73966814 original size:42 final size:42
Alignment explanation
Indices: 73966701--73966817 Score: 128
Period size: 43 Copynumber: 2.8 Consensus size: 42
73966691 CGGAAAGCTC
* * * ** *
73966701 ATACAATGCCAACATCCTAGATGTGGTCTTACATGTAATCAA
1 ATACGATGCCAACGTCCCAGACATGGTCTTACATGAAATCAA
* * *
73966743 AAATCGATGCC-ACTGTCCCAGGCAGGGTCTTACATGAAATCAA
1 ATA-CGATGCCAAC-GTCCCAGACATGGTCTTACATGAAATCAA
73966786 ATACGATGCCAACGTCCCAGACATGGTCTTAC
1 ATACGATGCCAACGTCCCAGACATGGTCTTAC
73966818 CGATAACACA
Statistics
Matches: 60, Mismatches: 12, Indels: 6
0.77 0.15 0.08
Matches are distributed among these distances:
42 28 0.47
43 32 0.53
ACGTcount: A:0.32, C:0.26, G:0.18, T:0.24
Consensus pattern (42 bp):
ATACGATGCCAACGTCCCAGACATGGTCTTACATGAAATCAA
Found at i:73969162 original size:21 final size:21
Alignment explanation
Indices: 73969137--73969179 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 21
73969127 GATAGAATAC
73969137 ATAAAATACAAATAATTTAAT
1 ATAAAATACAAATAATTTAAT
* *
73969158 ATAAAATACAAGTAGTTTAAT
1 ATAAAATACAAATAATTTAAT
73969179 A
1 A
73969180 GTGATATGTA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.58, C:0.05, G:0.05, T:0.33
Consensus pattern (21 bp):
ATAAAATACAAATAATTTAAT
Found at i:73970892 original size:45 final size:44
Alignment explanation
Indices: 73970841--73970936 Score: 120
Period size: 45 Copynumber: 2.2 Consensus size: 44
73970831 AACTTCAGGG
* * ** *
73970841 AGATAAGGCTAGTGACTTAAATCTGCTCCGTTGCTTACCTCGAGA
1 AGATAAGGATAGTGACTAAAATCTGCTCCCCTAC-TACCTCGAGA
* *
73970886 AGATAAGGATATTGACTAAAATCTGCTCCCCTACTACCTCGGGA
1 AGATAAGGATAGTGACTAAAATCTGCTCCCCTACTACCTCGAGA
73970930 AGATAAG
1 AGATAAG
73970937 ATTCGTCATC
Statistics
Matches: 44, Mismatches: 7, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
44 16 0.36
45 28 0.64
ACGTcount: A:0.31, C:0.22, G:0.21, T:0.26
Consensus pattern (44 bp):
AGATAAGGATAGTGACTAAAATCTGCTCCCCTACTACCTCGAGA
Found at i:73971200 original size:178 final size:178
Alignment explanation
Indices: 73970901--73972227 Score: 1581
Period size: 178 Copynumber: 7.5 Consensus size: 178
73970891 AGGATATTGA
* * * * * *
73970901 CTAAAATCTGCTCCCCTACTACCTCGGGAAGATAAGATTCGTCATCTTCGATCAGCCCCACTGCT
1 CTAAAATCTGCTCCCCTGCTACCTCGAGAAGATAAGATTCGCCATCTTCGATCTGCTCCACTACT
* *
73970966 ATCTCGAGGAGACAAGATCTTCAATCTTCAGTCTGCTTCCTTGCTACCTCAGGAAGATAAGACTA
66 ATCTCAAGGAGATAAGATCTTCAATCTTCAGTCTGCTTCCTTGCTACCTCAGGAAGATAAGACTA
* * *
73971031 CAATCTTTGACCTGCTCTCTTGCTACCTTAGAGAAATAAGGCTGGTGG
131 CAATCTTTAACCTGCTCTCTTGCTACCTCAGAGAGATAAGGCTGGTGG
* * *
73971079 CTAAAATCTGCTCCCCTACTACCTCGGGAAGATAAGATTCGCCATCTTCGATCTGCTCCATTACT
1 CTAAAATCTGCTCCCCTGCTACCTCGAGAAGATAAGATTCGCCATCTTCGATCTGCTCCACTACT
* * * *
73971144 ATCTCAAGGAGATAAGATCTTCAATCATCAATCTGTTTCCTAGCTACCTCAGGAAGATAAGACTA
66 ATCTCAAGGAGATAAGATCTTCAATCTTCAGTCTGCTTCCTTGCTACCTCAGGAAGATAAGACTA
* *
73971209 TAATCTTCAACCTGCTCTCTTGCTACCTCAGAGAGATAAGGCTGGTGG
131 CAATCTTTAACCTGCTCTCTTGCTACCTCAGAGAGATAAGGCTGGTGG
* * * * * * * * *
73971257 CTAAAATTTACTCCTCTACTATCTCGGGAAGATAAGATTCGCCATCTTCAATCTACTCCACTGCT
1 CTAAAATCTGCTCCCCTGCTACCTCGAGAAGATAAGATTCGCCATCTTCGATCTGCTCCACTACT
* * * **
73971322 ATCTGAAGGAGATAAGATATTCAATCTTCAATCTGCTTCCTTGCTACCTTTGGAAGATAAGACTA
66 ATCTCAAGGAGATAAGATCTTCAATCTTCAGTCTGCTTCCTTGCTACCTCAGGAAGATAAGACTA
* * *
73971387 CAATCTTCAGCCTACTCTCTTGCTACCTCAGAGAGATAAGGCTGGTGG
131 CAATCTTTAACCTGCTCTCTTGCTACCTCAGAGAGATAAGGCTGGTGG
* * * * *
73971435 CTAAAATTTGCTCCCCTGCTACCTCGAGAAGATAAGATTTGTCATTTTTGATCTGCTCCACTACT
1 CTAAAATCTGCTCCCCTGCTACCTCGAGAAGATAAGATTCGCCATCTTCGATCTGCTCCACTACT
* * * * * *
73971500 -GCTTAGGGAGATAAGATCTGT-GATCTTCAATCTGCTTCTTTGCTACCTCAGGAAGATAAGACT
66 ATCTCAAGGAGATAAGATCT-TCAATCTTCAGTCTGCTTCCTTGCTACCTCAGGAAGATAAGACT
* * * *
73971563 ATAATCTTCAGCCTGCTC-CTTTGCTACCTCAG-GAAGATAAGGCTAGTGG
130 ACAATCTTTAACCTGCTCTC-TTGCTACCTCAGAG-AGATAAGGCTGGTGG
* * * * * ** * * *
73971612 CTGAAATCTGCTTCCTTGCTGCCTCGAGAAGATAAGATTCACTGTCTTGGATCTGCTTCACTGCT
1 CTAAAATCTGCTCCCCTGCTACCTCGAGAAGATAAGATTCGCCATCTTCGATCTGCTCCACTACT
* * * *
73971677 ATTTCAGGGAGATAAGATCTTCAATCTTCAGTTTGCTTCCTTGCTACCTCAGGAAGATAAGACAA
66 ATCTCAAGGAGATAAGATCTTCAATCTTCAGTCTGCTTCCTTGCTACCTCAGGAAGATAAGACTA
* * * * * * *
73971742 TAATCTTCAGCCTGCTCCCTTGCTACCTAAGGGAGATAAGGCTAGTGG
131 CAATCTTTAACCTGCTCTCTTGCTACCTCAGAGAGATAAGGCTGGTGG
* * * * * * *
73971790 CTGAAATCTGCTCGCCTGCTACCCCGAAAAGATAAGATTTGCCATCTTCGGTTTGCTCCACTACT
1 CTAAAATCTGCTCCCCTGCTACCTCGAGAAGATAAGATTCGCCATCTTCGATCTGCTCCACTACT
* * * * * * *
73971855 -GCTTAGGGAGA-AAGATCTACAATCTTCAGTCTGCTTCCATACTACCTTAGGAAGATAAGACTA
66 ATCTCAAGGAGATAAGATCTTCAATCTTCAGTCTGCTTCCTTGCTACCTCAGGAAGATAAGACTA
* * * * *
73971918 CAATCTTCAACCTGCTTTTTTGCTACCTCAAAAAGATAAGGCTGGTGG
131 CAATCTTTAACCTGCTCTCTTGCTACCTCAGAGAGATAAGGCTGGTGG
* * * *
73971966 CTAAAATCTACTCCCCTGCTACCTCTAAAAGATAAGATTCGCCATCTTCGATCTGTTCCACTACT
1 CTAAAATCTGCTCCCCTGCTACCTCGAGAAGATAAGATTCGCCATCTTCGATCTGCTCCACTACT
* * * * *
73972031 -GCTTAAGGAGATAAGATCTACAATCTTCAGTCTGCTTCCTTACTACCCCAGGAAGATAAGACTA
66 ATCTCAAGGAGATAAGATCTTCAATCTTCAGTCTGCTTCCTTGCTACCTCAGGAAGATAAGACTA
* * *
73972095 CAATCTTCAACCTGCTCTTTTGCTACCTCAGAGAGATAAGACTGGTGG
131 CAATCTTTAACCTGCTCTCTTGCTACCTCAGAGAGATAAGGCTGGTGG
* ** *
73972143 CTAAAATCTGCTCCCCTGCTATCTC-AGAAAGATAAGATTCATCATCTTCAATCTGCTCCACTAC
1 CTAAAATCTGCTCCCCTGCTACCTCGAG-AAGATAAGATTCGCCATCTTCGATCTGCTCCACTAC
*
73972207 TATCTCAGGGAGATAAGATCT
65 TATCTCAAGGAGATAAGATCT
73972228 GTGAATTCAC
Statistics
Matches: 998, Mismatches: 141, Indels: 20
0.86 0.12 0.02
Matches are distributed among these distances:
176 153 0.15
177 304 0.30
178 539 0.54
179 2 0.00
ACGTcount: A:0.27, C:0.25, G:0.18, T:0.30
Consensus pattern (178 bp):
CTAAAATCTGCTCCCCTGCTACCTCGAGAAGATAAGATTCGCCATCTTCGATCTGCTCCACTACT
ATCTCAAGGAGATAAGATCTTCAATCTTCAGTCTGCTTCCTTGCTACCTCAGGAAGATAAGACTA
CAATCTTTAACCTGCTCTCTTGCTACCTCAGAGAGATAAGGCTGGTGG
Found at i:73971560 original size:45 final size:45
Alignment explanation
Indices: 73970989--73971781 Score: 220
Period size: 44 Copynumber: 17.8 Consensus size: 45
73970979 AAGATCTTCA
* ***
73970989 ATCTTCAGTCTGCTTCCTTGCTACCTCAGGAAGATAAGA-CTACA
1 ATCTTCAATCTGCTTCCTTGCTACCTCAGGAAGATAAGATCTGTG
** * * *
73971033 ATCTTTGACCTGC-TCTCTTGCTACCTTAGAGAA-ATAAG-GCTGGTG
1 ATCTTCAATCTGCTTC-CTTGCTACCTCAG-GAAGATAAGATCT-GTG
* ** * * * * **
73971078 -GCTAAAATCTGCTCCCCTACTACCTCGGGAAGATAAGAT-TCGCC
1 ATCTTCAATCTGCTTCCTTGCTACCTCAGGAAGATAAGATCT-GTG
* * * *
73971122 ATCTTCGATCTGC-TCCATTACTATCTCAAGG-AGATAAGATCT-TCA
1 ATCTTCAATCTGCTTCC-TTGCTACCTC-AGGAAGATAAGATCTGT-G
* * * * *
73971167 ATCATCAATCTGTTTCCTAGCTACCTCAGGAAGATAAGA-CTATA
1 ATCTTCAATCTGCTTCCTTGCTACCTCAGGAAGATAAGATCTGTG
* *
73971211 ATCTTCAACCTGC-TCTCTTGCTACCTCA-GAGAGATAAG-GCTGGTG
1 ATCTTCAATCTGCTTC-CTTGCTACCTCAGGA-AGATAAGATCT-GTG
* ** * * * * * **
73971256 -GCTAAAATTTAC-TCCTCTACTATCTCGGGAAGATAAGAT-TCGCC
1 ATCTTCAATCTGCTTCCT-TGCTACCTCAGGAAGATAAGATCT-GTG
* * * * * *
73971300 ATCTTCAATCTAC-TCCACTGCTATCTGAAGG-AGATAAGATAT-TCA
1 ATCTTCAATCTGCTTCC-TTGCTACCT-CAGGAAGATAAGATCTGT-G
** ***
73971345 ATCTTCAATCTGCTTCCTTGCTACCTTTGGAAGATAAGA-CTACA
1 ATCTTCAATCTGCTTCCTTGCTACCTCAGGAAGATAAGATCTGTG
** * *
73971389 ATCTTCAGCCTAC-TCTCTTGCTACCTCA-GAGAGATAAG-GCTGGTG
1 ATCTTCAATCTGCTTC-CTTGCTACCTCAGGA-AGATAAGATCT-GTG
* ** * * * * *
73971434 -GCTAAAATTTGCTCCCCTGCTACCTC-GAGAAGATAAGATTTGTC
1 ATCTTCAATCTGCTTCCTTGCTACCTCAG-GAAGATAAGATCTGTG
* ** * * *
73971478 ATTTTTGATCTGC-TCC--ACTACTGCTTAGGGAGATAAGATCTGTG
1 ATCTTCAATCTGCTTCCTTGCTAC--CTCAGGAAGATAAGATCTGTG
* * *
73971522 ATCTTCAATCTGCTTCTTTGCTACCTCAGGAAGATAAGA-CTATA
1 ATCTTCAATCTGCTTCCTTGCTACCTCAGGAAGATAAGATCTGTG
** *
73971566 ATCTTCAGCCTGC-TCCTTTGCTACCTCAGGAAGATAAG-GCTAGTG
1 ATCTTCAATCTGCTTCC-TTGCTACCTCAGGAAGATAAGATCT-GTG
* ** * **
73971611 -GCTGAAATCTGCTTCCTTGCTGCCTC-GAGAAGATAAGATTCACTG
1 ATCTTCAATCTGCTTCCTTGCTACCTCAG-GAAGATAAGA-TCTGTG
** ** * *
73971656 -TCTTGGATCTGCTTCAC-TGCTATTTCAGGGAGATAAGATCT-TCA
1 ATCTTCAATCTGCTTC-CTTGCTACCTCAGGAAGATAAGATCTGT-G
* * ** *
73971700 ATCTTCAGTTTGCTTCCTTGCTACCTCAGGAAGATAAGA-CAATA
1 ATCTTCAATCTGCTTCCTTGCTACCTCAGGAAGATAAGATCTGTG
** * * *
73971744 ATCTTCAGCCTGCTCCCTTGCTACCTAAGGGAGATAAG
1 ATCTTCAATCTGCTTCCTTGCTACCTCAGGAAGATAAG
73971782 GCTAGTGGCT
Statistics
Matches: 539, Mismatches: 152, Indels: 116
0.67 0.19 0.14
Matches are distributed among these distances:
42 4 0.01
43 19 0.04
44 297 0.55
45 200 0.37
46 15 0.03
47 4 0.01
ACGTcount: A:0.26, C:0.25, G:0.18, T:0.31
Consensus pattern (45 bp):
ATCTTCAATCTGCTTCCTTGCTACCTCAGGAAGATAAGATCTGTG
Found at i:73972121 original size:44 final size:44
Alignment explanation
Indices: 73972038--73972137 Score: 114
Period size: 44 Copynumber: 2.2 Consensus size: 44
73972028 ACTGCTTAAG
**
73972038 GAGATAAGATCTACAATCTTCAGTCTGCTTCCTTACTACCCCAG-
1 GAGATAAGA-CTACAATCTTCAACCTGCTTCCTTACTACCCCAGA
* * *
73972082 GAAGATAAGACTACAATCTTCAACCTGC-TCTTTTGCTACCTCAGA
1 G-AGATAAGACTACAATCTTCAACCTGCTTC-CTTACTACCCCAGA
73972127 GAGATAAGACT
1 GAGATAAGACT
73972138 GGTGGCTAAA
Statistics
Matches: 48, Mismatches: 5, Indels: 6
0.81 0.08 0.10
Matches are distributed among these distances:
43 2 0.04
44 37 0.77
45 9 0.19
ACGTcount: A:0.31, C:0.26, G:0.15, T:0.28
Consensus pattern (44 bp):
GAGATAAGACTACAATCTTCAACCTGCTTCCTTACTACCCCAGA
Found at i:73978933 original size:68 final size:69
Alignment explanation
Indices: 73978861--73979008 Score: 162
Period size: 67 Copynumber: 2.2 Consensus size: 69
73978851 CGTCATGTGT
* * * *
73978861 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACC
1 ACAAGAGAGCTACAAGACA-TAT-ATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACC
73978923 ATGTAG
64 ATGTAG
* ** * *
73978929 ACAAGAGAGCT--ATGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCAT
1 ACAAGAGAGCTACAAGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCAT
73978992 GTAG
66 GTAG
73978996 ACAAGAGAGCTAC
1 ACAAGAGAGCTAC
73979009 GAGATAAACT
Statistics
Matches: 66, Mismatches: 9, Indels: 9
0.79 0.11 0.11
Matches are distributed among these distances:
64 20 0.30
65 7 0.11
66 5 0.08
67 23 0.35
68 11 0.17
ACGTcount: A:0.32, C:0.17, G:0.28, T:0.22
Consensus pattern (69 bp):
ACAAGAGAGCTACAAGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCAT
GTAG
Found at i:73984150 original size:13 final size:13
Alignment explanation
Indices: 73984132--73984157 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
73984122 TTCTTCAGGA
73984132 AAAGATGAATCAT
1 AAAGATGAATCAT
73984145 AAAGATGAATCAT
1 AAAGATGAATCAT
73984158 GATATATGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.54, C:0.08, G:0.15, T:0.23
Consensus pattern (13 bp):
AAAGATGAATCAT
Found at i:73989281 original size:25 final size:25
Alignment explanation
Indices: 73989234--73989281 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
73989224 TTATAATATG
* * *
73989234 AAAATGACCATTTTGCCCTTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
73989259 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
73989282 GTTTAAATAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.35, C:0.23, G:0.15, T:0.27
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:73989365 original size:11 final size:11
Alignment explanation
Indices: 73989329--73989384 Score: 57
Period size: 11 Copynumber: 5.5 Consensus size: 11
73989319 CATGGTATGT
73989329 ATGATATGCAC
1 ATGATATGCAC
* *
73989340 ATGACATG--T
1 ATGATATGCAC
73989349 ATGATATGCAC
1 ATGATATGCAC
*
73989360 ATGATATG--T
1 ATGATATGCAC
73989369 ATGATATGCAC
1 ATGATATGCAC
73989380 ATGAT
1 ATGAT
73989385 GTATTCATAA
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
9 15 0.43
11 20 0.57
ACGTcount: A:0.36, C:0.12, G:0.20, T:0.32
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:73989384 original size:20 final size:20
Alignment explanation
Indices: 73989318--73989384 Score: 116
Period size: 20 Copynumber: 3.4 Consensus size: 20
73989308 ATTTTGATAA
*
73989318 ACATGGTATGTATGATATGC
1 ACATGATATGTATGATATGC
*
73989338 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
73989358 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
73989378 ACATGAT
1 ACATGAT
73989385 GTATTCATAA
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 44 1.00
ACGTcount: A:0.34, C:0.12, G:0.21, T:0.33
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:73989463 original size:25 final size:25
Alignment explanation
Indices: 73989435--73989563 Score: 167
Period size: 25 Copynumber: 5.2 Consensus size: 25
73989425 AGGAAGTGTA
73989435 AAAGGGCTTATGCCCCAGTTATGAT
1 AAAGGGCTTATGCCCCAGTTATGAT
73989460 AAAGGGCTTATGCCCCAGTTATGAT
1 AAAGGGCTTATGCCCCAGTTATGAT
*
73989485 AAAGGGCTTATGCCCCAGTTATTA-
1 AAAGGGCTTATGCCCCAGTTATGAT
*
73989509 AAAGGGCTT-TGCCCCAGTTATTA-
1 AAAGGGCTTATGCCCCAGTTATGAT
*
73989532 AAAGAGGC-TAGGCCTCCAGTTATATGAT
1 AAAG-GGCTTATGCC-CCAG-T-TATGAT
73989560 AAAG
1 AAAG
73989564 CAGCTATGCT
Statistics
Matches: 95, Mismatches: 3, Indels: 9
0.89 0.03 0.08
Matches are distributed among these distances:
23 19 0.20
24 15 0.16
25 52 0.55
26 1 0.01
27 4 0.04
28 4 0.04
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.27
Consensus pattern (25 bp):
AAAGGGCTTATGCCCCAGTTATGAT
Found at i:73989666 original size:41 final size:41
Alignment explanation
Indices: 73989609--73989690 Score: 164
Period size: 41 Copynumber: 2.0 Consensus size: 41
73989599 GGGCGAGTTA
73989609 ATCCCCACATGGTGTGTTGGTTGGTACGGGTGGAAAGTAGC
1 ATCCCCACATGGTGTGTTGGTTGGTACGGGTGGAAAGTAGC
73989650 ATCCCCACATGGTGTGTTGGTTGGTACGGGTGGAAAGTAGC
1 ATCCCCACATGGTGTGTTGGTTGGTACGGGTGGAAAGTAGC
73989691 GGATGGTGGG
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 41 1.00
ACGTcount: A:0.20, C:0.17, G:0.37, T:0.27
Consensus pattern (41 bp):
ATCCCCACATGGTGTGTTGGTTGGTACGGGTGGAAAGTAGC
Found at i:73989824 original size:31 final size:31
Alignment explanation
Indices: 73989789--73989852 Score: 110
Period size: 31 Copynumber: 2.1 Consensus size: 31
73989779 TGTTTACAGT
73989789 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
**
73989820 AAAGGCTTCGGCCCAGTGTTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
73989851 AA
1 AA
73989853 TATGAAAAGG
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.38, C:0.16, G:0.23, T:0.23
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:73992821 original size:70 final size:70
Alignment explanation
Indices: 73992688--73992822 Score: 218
Period size: 70 Copynumber: 1.9 Consensus size: 70
73992678 TAGTTTATTA
* * * *
73992688 CTAATTAATTTGCTGCTGTAATGCTGTAAATTATTGGCTGTCCAAATTAGGAAAAATTTATGGTG
1 CTAATTAATATGCTGCTGTAATACTGTAAATTATTGGCTATCCAAATTAGGAAAAATTCATGGTG
73992753 CTTAG
66 CTTAG
73992758 CTAATTAATATGCTGCTGTAATACTGTAAATTATTGGCTATCCAAATTAGGACAAAA-TCATGGT
1 CTAATTAATATGCTGCTGTAATACTGTAAATTATTGGCTATCCAAATTAGGA-AAAATTCATGGT
73992822 G
65 G
73992823 TTATGTGCTA
Statistics
Matches: 60, Mismatches: 4, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
70 56 0.93
71 4 0.07
ACGTcount: A:0.33, C:0.13, G:0.19, T:0.36
Consensus pattern (70 bp):
CTAATTAATATGCTGCTGTAATACTGTAAATTATTGGCTATCCAAATTAGGAAAAATTCATGGTG
CTTAG
Found at i:73993652 original size:43 final size:43
Alignment explanation
Indices: 73993594--73993765 Score: 224
Period size: 43 Copynumber: 4.0 Consensus size: 43
73993584 TATCGAAATG
73993594 TGATATACGGGCTTCGAGCCTAGCAGGCTATAATGCCGGTGAAA
1 TGATAT-CGGGCTTCGAGCCTAGCAGGCTATAATGCCGGTGAAA
* * *
73993638 TGATATCGGGCTTCGAACCTAGCAGGCTATAATGCTGGTGAGA
1 TGATATCGGGCTTCGAGCCTAGCAGGCTATAATGCCGGTGAAA
* * *
73993681 TAATATCGGGCCTC-AGGCCTAGCAGGCTATAATGCTGGTGAAA
1 TGATATCGGGCTTCGA-GCCTAGCAGGCTATAATGCCGGTGAAA
* *
73993724 TGATATAGGGCTTCAAGCCTAGCAGG-TGA-AATGCCGGTGAAA
1 TGATATCGGGCTTCGAGCCTAGCAGGCT-ATAATGCCGGTGAAA
73993766 GAAAGGCTTC
Statistics
Matches: 114, Mismatches: 11, Indels: 8
0.86 0.08 0.06
Matches are distributed among these distances:
42 14 0.12
43 93 0.82
44 7 0.06
ACGTcount: A:0.28, C:0.19, G:0.30, T:0.23
Consensus pattern (43 bp):
TGATATCGGGCTTCGAGCCTAGCAGGCTATAATGCCGGTGAAA
Found at i:73995516 original size:57 final size:57
Alignment explanation
Indices: 73995410--73995555 Score: 161
Period size: 57 Copynumber: 2.6 Consensus size: 57
73995400 GAATTCCTTG
* * * * **
73995410 TTCATTTCTAAATGAATTCATTTAT-CATTTCCATTTCCATTTTGGAGAAAACCACA
1 TTCATTTCCAAATGATTTTATTTCTCCATTTCCATTTCCATTTTCAAGAAAACCACA
* * **
73995466 TTCATTTCCAAATGATTTTATTTCTCCATTTTCATTTTCATTTTCAAGAAAACCTTA
1 TTCATTTCCAAATGATTTTATTTCTCCATTTCCATTTCCATTTTCAAGAAAACCACA
*
73995523 ATCATTTCCAAATG-TTTCCTATTTCTCCATTTC
1 TTCATTTCCAAATGATTT--TATTTCTCCATTTC
73995556 GCCATTTCTA
Statistics
Matches: 75, Mismatches: 12, Indels: 4
0.82 0.13 0.04
Matches are distributed among these distances:
56 24 0.32
57 38 0.51
58 13 0.17
ACGTcount: A:0.28, C:0.21, G:0.05, T:0.46
Consensus pattern (57 bp):
TTCATTTCCAAATGATTTTATTTCTCCATTTCCATTTCCATTTTCAAGAAAACCACA
Found at i:73999077 original size:46 final size:44
Alignment explanation
Indices: 73999012--73999173 Score: 132
Period size: 46 Copynumber: 3.5 Consensus size: 44
73999002 GTGTCGATGC
*
73999012 CATGTCCCAGACACGGTCTTACACTGGCTCATATCTCAAGTCGAAG
1 CATGTCCCAGACA-TGTCTTACACTGGCTCATATCTCAAG-CGAAG
* *
73999058 CATGTCCCAGACATTGTCTTACACTGACTATCATATCGT--AGCCAATG
1 CATGTCCCAGACA-TGTCTTACACTGGC--TCATATC-TCAAGCGAA-G
* * * * * *
73999105 CATGACCCAGGCATGTCTTACACTAGCTTACTA-CCCAAGGCGGATG
1 CATGTCCCAGACATGTCTTACACTGGCTCA-TATCTCAA-GC-GAAG
73999151 CATGTCCCAGACATGTCTTACAC
1 CATGTCCCAGACATGTCTTACAC
73999174 AAGCACTCGT
Statistics
Matches: 93, Mismatches: 14, Indels: 18
0.74 0.11 0.14
Matches are distributed among these distances:
44 3 0.03
45 3 0.03
46 64 0.69
47 15 0.16
48 7 0.08
49 1 0.01
ACGTcount: A:0.27, C:0.30, G:0.18, T:0.25
Consensus pattern (44 bp):
CATGTCCCAGACATGTCTTACACTGGCTCATATCTCAAGCGAAG
Found at i:74008576 original size:46 final size:46
Alignment explanation
Indices: 74008509--74008683 Score: 198
Period size: 46 Copynumber: 3.8 Consensus size: 46
74008499 TGTAACCCGC
74008509 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCATTCGCAT
*
74008555 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG--G-C-A-TTCGCAT
* * * **
74008605 CTCA-CA---AACTCAGACTCAACTCAACGAGTTCGAACATTCGCAT
1 C-CATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCATTCGCAT
*
74008648 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG
74008684 ATGCTCAACC
Statistics
Matches: 108, Mismatches: 10, Indels: 22
0.77 0.07 0.16
Matches are distributed among these distances:
42 4 0.04
43 6 0.06
44 1 0.01
46 61 0.56
47 24 0.22
48 1 0.01
49 1 0.01
50 6 0.06
51 4 0.04
ACGTcount: A:0.31, C:0.30, G:0.19, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCATTCGCAT
Found at i:74008626 original size:93 final size:93
Alignment explanation
Indices: 74008518--74008687 Score: 295
Period size: 93 Copynumber: 1.8 Consensus size: 93
74008508 CCCATAAGTG
* **
74008518 AACTCGGACTCAACTCAACGAGCTCGGGCATTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
1 AACTCAGACTCAACTCAACGAGCTCGAACATTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
74008583 GAGCTCGGATGCCTAGTTACATCTCACA
66 GAGCTCGGATGCCTAGTTACATCTCACA
*
74008611 AACTCAGACTCAACTCAACGAGTTCGAACATTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
1 AACTCAGACTCAACTCAACGAGCTCGAACATTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
*
74008676 GAGTTCGGATGC
66 GAGCTCGGATGC
74008688 TCAACCATCC
Statistics
Matches: 72, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.31, C:0.30, G:0.19, T:0.21
Consensus pattern (93 bp):
AACTCAGACTCAACTCAACGAGCTCGAACATTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
GAGCTCGGATGCCTAGTTACATCTCACA
Found at i:74009275 original size:20 final size:18
Alignment explanation
Indices: 74009241--74009277 Score: 56
Period size: 20 Copynumber: 1.9 Consensus size: 18
74009231 GCAACTCATA
74009241 ATTTCAACTATTTTACAC
1 ATTTCAACTATTTTACAC
74009259 ATTTACAACTCATTTTACA
1 ATTT-CAACT-ATTTTACA
74009278 ACTTAGCAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 4 0.24
19 5 0.29
20 8 0.47
ACGTcount: A:0.35, C:0.22, G:0.00, T:0.43
Consensus pattern (18 bp):
ATTTCAACTATTTTACAC
Found at i:74009996 original size:3 final size:3
Alignment explanation
Indices: 74009982--74010070 Score: 74
Period size: 3 Copynumber: 29.3 Consensus size: 3
74009972 ACTTATTTTC
* * *
74009982 TAT TAT TGT TAT TAT TAA TA- TAC TAT TAT TAT TAT TAT TAAT GTAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T-AT -TAT
* * * *
74010028 TGT TAT TAT TAT TTT CTAC T-T TAT TAT TAT TAT TAT TAC TAT T
1 TAT TAT TAT TAT TAT -TAT TAT TAT TAT TAT TAT TAT TAT TAT T
74010071 GCCATCATCA
Statistics
Matches: 69, Mismatches: 12, Indels: 10
0.76 0.13 0.11
Matches are distributed among these distances:
2 3 0.04
3 60 0.87
4 5 0.07
5 1 0.01
ACGTcount: A:0.30, C:0.04, G:0.03, T:0.62
Consensus pattern (3 bp):
TAT
Found at i:74010039 original size:20 final size:20
Alignment explanation
Indices: 74009985--74010071 Score: 79
Period size: 20 Copynumber: 4.2 Consensus size: 20
74009975 TATTTTCTAT
*
74009985 TATTGTTATTATTAATATAC
1 TATTGTTATTATTATTATAC
* *
74010005 TATTATTATTATTATTA-ATG
1 TATTGTTATTATTATTATA-C
*
74010025 TATTGTTATTATTATT-TTC
1 TATTGTTATTATTATTATAC
*
74010044 TACTTTATTATTATTATTATTAC
1 TA--TTGTTATTATTATTA-TAC
74010067 TATTG
1 TATTG
74010072 CCATCATCAT
Statistics
Matches: 52, Mismatches: 9, Indels: 11
0.72 0.12 0.15
Matches are distributed among these distances:
19 3 0.06
20 30 0.58
21 15 0.29
23 4 0.08
ACGTcount: A:0.30, C:0.05, G:0.05, T:0.61
Consensus pattern (20 bp):
TATTGTTATTATTATTATAC
Found at i:74010418 original size:22 final size:21
Alignment explanation
Indices: 74010376--74010418 Score: 50
Period size: 22 Copynumber: 2.0 Consensus size: 21
74010366 GTATTAAATT
* *
74010376 CTTTTTATTATTTATTATAAA
1 CTTTTTACTATTAATTATAAA
*
74010397 CTTTTCTACTATTAATTTTAAA
1 CTTTT-TACTATTAATTATAAA
74010419 AATTCACACG
Statistics
Matches: 18, Mismatches: 3, Indels: 1
0.82 0.14 0.05
Matches are distributed among these distances:
21 5 0.28
22 13 0.72
ACGTcount: A:0.33, C:0.09, G:0.00, T:0.58
Consensus pattern (21 bp):
CTTTTTACTATTAATTATAAA
Found at i:74013197 original size:138 final size:136
Alignment explanation
Indices: 74012954--74013216 Score: 307
Period size: 138 Copynumber: 1.9 Consensus size: 136
74012944 TCAATTGAGC
* * *
74012954 AGCAAGATCATCATAGTCAACAATAGATTGATCATCATCCATCCTTTAATGTTGAATAAAGTCAC
1 AGCAAGATCATCACAGTCAACAACAGA-TGATCATCATCCATCCCTTAATGTTGAATAAAGTCAC
* * ** * * *
74013019 TAATAAATCCTGGATTGAATCTGAAATAGTGATCTCGCACGAGTGCTTGCATATAGTGTTAGCCA
65 TAATAAATCCCGGACTGAATCTGAAATAGAAACCTCGCACGAATGCCTGCATATAGTGTTAGCCA
74013084 ACAGGGT
130 ACAGGGT
* *
74013091 AGCAAGATCATCACAGTCAACAACGGA-G-TGATCATCCATCCCTTAAT-TATGAATTAATAATG
1 AGCAAGATCATCACAGTCAACAACAGATGATCATCATCCATCCCTTAATGT-TGAA-T-A-AA-G
** * *
74013153 TCACTAATAGCTCCCGGACTGAATCTGAAATGGAAACCTTGCACGAATGCCTGCATATAGTGTT
61 TCACTAATAAATCCCGGACTGAATCTGAAATAGAAACCTCGCACGAATGCCTGCATATAGTGTT
74013217 GATGGCTTGA
Statistics
Matches: 105, Mismatches: 16, Indels: 9
0.81 0.12 0.07
Matches are distributed among these distances:
133 1 0.01
134 21 0.20
135 2 0.02
136 1 0.01
137 26 0.25
138 54 0.51
ACGTcount: A:0.34, C:0.20, G:0.18, T:0.28
Consensus pattern (136 bp):
AGCAAGATCATCACAGTCAACAACAGATGATCATCATCCATCCCTTAATGTTGAATAAAGTCACT
AATAAATCCCGGACTGAATCTGAAATAGAAACCTCGCACGAATGCCTGCATATAGTGTTAGCCAA
CAGGGT
Found at i:74015303 original size:62 final size:62
Alignment explanation
Indices: 74015230--74015480 Score: 493
Period size: 62 Copynumber: 4.0 Consensus size: 62
74015220 ATCTAATTTA
*
74015230 TAATATAATAATCTTTATAATAGTTTTACCCGATAATTGATATATATGCTTATAAAATAAAT
1 TAATATAATAATTTTTATAATAGTTTTACCCGATAATTGATATATATGCTTATAAAATAAAT
74015292 TAATATAATAATTTTTATAATAGTTTTACCCGATAATTGATATATATGCTTATAAAATAAAT
1 TAATATAATAATTTTTATAATAGTTTTACCCGATAATTGATATATATGCTTATAAAATAAAT
74015354 TAATATAATAATTTTTATAATAGTTTTACCCGATAATTGATATATATGCTTATAAAATAAAT
1 TAATATAATAATTTTTATAATAGTTTTACCCGATAATTGATATATATGCTTATAAAATAAAT
74015416 TAATATAATAATTTTTATAATAGTTTTACCCGATAATTGATATATATGCTTATAAAATAAAT
1 TAATATAATAATTTTTATAATAGTTTTACCCGATAATTGATATATATGCTTATAAAATAAAT
74015478 TAA
1 TAA
74015481 GAGCTTTTAA
Statistics
Matches: 188, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
62 188 1.00
ACGTcount: A:0.44, C:0.07, G:0.06, T:0.43
Consensus pattern (62 bp):
TAATATAATAATTTTTATAATAGTTTTACCCGATAATTGATATATATGCTTATAAAATAAAT
Found at i:74022003 original size:79 final size:82
Alignment explanation
Indices: 74021892--74022076 Score: 220
Period size: 79 Copynumber: 2.3 Consensus size: 82
74021882 GCTACTCGTT
* * *
74021892 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAATTGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCC
* *
74021955 GGATTTAGTAAC-TCGCA
65 GGATATAGTAACTTAGCA
* **
74021972 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCG
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
* *
74022035 GATATGGTCACTTAGCA
66 GATATAGTAACTTAGCA
*
74022052 CAAA-GCCTTCGGGACTTAGCTCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
74022077 CATCATTCAA
Statistics
Matches: 90, Mismatches: 11, Indels: 8
0.83 0.10 0.07
Matches are distributed among these distances:
78 3 0.03
79 54 0.60
80 33 0.37
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (82 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
GATATAGTAACTTAGCA
Found at i:74022009 original size:39 final size:40
Alignment explanation
Indices: 74021892--74022076 Score: 216
Period size: 40 Copynumber: 4.7 Consensus size: 40
74021882 GCTACTCGTT
*
74021892 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
* *
74021932 CAATTGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* *
74021972 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * * * *
74022011 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
*
74022052 CAAA-GCCTTCGGGACTTAGCTCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
74022077 CATCATTCAA
Statistics
Matches: 124, Mismatches: 16, Indels: 10
0.83 0.11 0.07
Matches are distributed among these distances:
38 2 0.02
39 33 0.27
40 76 0.61
41 13 0.10
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:74026191 original size:43 final size:43
Alignment explanation
Indices: 74026130--74026211 Score: 146
Period size: 43 Copynumber: 1.9 Consensus size: 43
74026120 TTCAACGAAC
*
74026130 TCGTACACTTAGTGCCAATTAATTAGCCAAGGCTATAATTGTA
1 TCGTACACTTAGCGCCAATTAATTAGCCAAGGCTATAATTGTA
*
74026173 TCGTACACTTAGCGCCAATTAATTAGCCGAGGCTATAAT
1 TCGTACACTTAGCGCCAATTAATTAGCCAAGGCTATAAT
74026212 ATCGCACACA
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
43 37 1.00
ACGTcount: A:0.32, C:0.21, G:0.17, T:0.30
Consensus pattern (43 bp):
TCGTACACTTAGCGCCAATTAATTAGCCAAGGCTATAATTGTA
Found at i:74026230 original size:40 final size:41
Alignment explanation
Indices: 74026134--74026236 Score: 136
Period size: 43 Copynumber: 2.5 Consensus size: 41
74026124 ACGAACTCGT
*
74026134 ACACTTAGTGCCAATTAATTAGCCAAGGCTATAATTGTATCGT
1 ACACTTAGTGCCAATTAATTAGCCAAGGCTATAA-T-TATCGC
* *
74026177 ACACTTAGCGCCAATTAATTAGCCGAGGCTATAA-TATCGC
1 ACACTTAGTGCCAATTAATTAGCCAAGGCTATAATTATCGC
* *
74026217 ACACATAGTGCCAATCAATT
1 ACACTTAGTGCCAATTAATT
74026237 CAAACGAACT
Statistics
Matches: 54, Mismatches: 6, Indels: 3
0.86 0.10 0.05
Matches are distributed among these distances:
40 22 0.41
43 32 0.59
ACGTcount: A:0.34, C:0.22, G:0.16, T:0.28
Consensus pattern (41 bp):
ACACTTAGTGCCAATTAATTAGCCAAGGCTATAATTATCGC
Found at i:74032689 original size:43 final size:43
Alignment explanation
Indices: 74032641--74032793 Score: 227
Period size: 43 Copynumber: 3.6 Consensus size: 43
74032631 TTCAACGAAC
*
74032641 TCGCACACTTAGTGCCAATTAATTAGCTGAAACTATAATTGTA
1 TCGCACACTTAGTGCCAATTAATTAGCTGAAGCTATAATTGTA
*
74032684 TCGCACACTTAGTGCTAATTAATTAGCT-AAGGCTATAATTGTA
1 TCGCACACTTAGTGCCAATTAATTAGCTGAA-GCTATAATTGTA
* * * *
74032727 CCACACACTTAGTGCCAATTAATTAGATGAGGCTATAATTGTA
1 TCGCACACTTAGTGCCAATTAATTAGCTGAAGCTATAATTGTA
*
74032770 TCGTACACTTAGTGCCAATTAATT
1 TCGCACACTTAGTGCCAATTAATT
74032794 CAACCGAACT
Statistics
Matches: 98, Mismatches: 10, Indels: 4
0.88 0.09 0.04
Matches are distributed among these distances:
42 2 0.02
43 95 0.97
44 1 0.01
ACGTcount: A:0.33, C:0.18, G:0.15, T:0.33
Consensus pattern (43 bp):
TCGCACACTTAGTGCCAATTAATTAGCTGAAGCTATAATTGTA
Found at i:74034039 original size:6 final size:6
Alignment explanation
Indices: 74034021--74034108 Score: 74
Period size: 6 Copynumber: 14.3 Consensus size: 6
74034011 AAGAAACATT
* *
74034021 ATCAGA A-CTAGA ATCAGA ATTAGA ATCAGA ATCAG- GTGACAGA ATCAGA
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA AT--CAGA ATCAGA
* *
74034070 ATCAGA ATCAGT ATCAGGTA AT-AGA ATCAAA ATCAGA AT
1 ATCAGA ATCAGA ATCA-G-A ATCAGA ATCAGA ATCAGA AT
74034109 GTGAATGCAA
Statistics
Matches: 66, Mismatches: 8, Indels: 16
0.73 0.09 0.18
Matches are distributed among these distances:
5 5 0.08
6 52 0.79
7 6 0.09
8 3 0.05
ACGTcount: A:0.48, C:0.14, G:0.18, T:0.20
Consensus pattern (6 bp):
ATCAGA
Found at i:74034068 original size:31 final size:31
Alignment explanation
Indices: 74034030--74034108 Score: 113
Period size: 31 Copynumber: 2.5 Consensus size: 31
74034020 TATCAGAACT
* *
74034030 AGAATCAGAATTAGAATCAGAATCAGGTGAC
1 AGAATCAGAATCAGAATCAGAATCAGGTAAC
* *
74034061 AGAATCAGAATCAGAATCAGTATCAGGTAAT
1 AGAATCAGAATCAGAATCAGAATCAGGTAAC
*
74034092 AGAATCAAAATCAGAAT
1 AGAATCAGAATCAGAAT
74034109 GTGAATGCAA
Statistics
Matches: 43, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 43 1.00
ACGTcount: A:0.48, C:0.13, G:0.19, T:0.20
Consensus pattern (31 bp):
AGAATCAGAATCAGAATCAGAATCAGGTAAC
Found at i:74034095 original size:25 final size:23
Alignment explanation
Indices: 74034035--74034105 Score: 72
Period size: 25 Copynumber: 2.9 Consensus size: 23
74034025 GAACTAGAAT
74034035 CAGAATTAGAATCAGAATCAGGTGA
1 CAGAA-TAGAATCAGAATCA-GTGA
74034060 CAGAATCAGAATCAGAATCAGT-A
1 CAGAAT-AGAATCAGAATCAGTGA
*
74034083 TCAGGTAATAGAATCAAAATCAG
1 -CA-G-AATAGAATCAGAATCAG
74034106 AATGTGAATG
Statistics
Matches: 41, Mismatches: 1, Indels: 8
0.82 0.02 0.16
Matches are distributed among these distances:
23 1 0.02
24 5 0.12
25 32 0.78
26 3 0.07
ACGTcount: A:0.46, C:0.14, G:0.20, T:0.20
Consensus pattern (23 bp):
CAGAATAGAATCAGAATCAGTGA
Found at i:74034264 original size:27 final size:26
Alignment explanation
Indices: 74034226--74034333 Score: 99
Period size: 27 Copynumber: 4.0 Consensus size: 26
74034216 AGCATGGCTG
* * *
74034226 CCAGAATAGATATTGTGATAGAGTCA
1 CCAGAACAGATATTGTGACAGAGCCA
* *
74034252 CCAGATACAGATATTTTGGCAGAGCCA
1 CCAGA-ACAGATATTGTGACAGAGCCA
* *
74034279 CCAGAACAGATATTTGTGGCATAGCCA
1 CCAGAACAGATA-TTGTGACAGAGCCA
* * *
74034306 CCAGAATCAGATAATGTGGCAAAGCCA
1 CCAGAA-CAGATATTGTGACAGAGCCA
74034333 C
1 C
74034334 TTAATAGAAT
Statistics
Matches: 70, Mismatches: 9, Indels: 5
0.83 0.11 0.06
Matches are distributed among these distances:
26 12 0.17
27 52 0.74
28 6 0.09
ACGTcount: A:0.36, C:0.20, G:0.22, T:0.21
Consensus pattern (26 bp):
CCAGAACAGATATTGTGACAGAGCCA
Found at i:74035159 original size:27 final size:27
Alignment explanation
Indices: 74034897--74035173 Score: 331
Period size: 27 Copynumber: 10.3 Consensus size: 27
74034887 GGGGCAAAAT
* * *
74034897 GGTAATTTTACCCCAC-GAGGGTATCTC
1 GGTAATTCTACCCTACAG-GGGTATTTC
74034924 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
74034951 GATAATTCTACCATACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * *
74034978 GATAATTCTACCTTATAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
74035005 AGTAATTCTACCCTAGAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
74035032 GATAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * * * *
74035059 AGTAATTTTACCATATAGGGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTC
*
74035086 GGTAATTCTACCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * *
74035113 AGTAATTCTGCACTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * *
74035140 GGTAATTCTACCCTATAGGGTTCTTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
74035167 GGTAATT
1 GGTAATT
74035174 TTGTAAATCG
Statistics
Matches: 215, Mismatches: 34, Indels: 2
0.86 0.14 0.01
Matches are distributed among these distances:
27 214 1.00
28 1 0.00
ACGTcount: A:0.25, C:0.18, G:0.21, T:0.36
Consensus pattern (27 bp):
GGTAATTCTACCCTACAGGGGTATTTC
Found at i:74035197 original size:27 final size:27
Alignment explanation
Indices: 74035167--74035243 Score: 82
Period size: 27 Copynumber: 2.9 Consensus size: 27
74035157 GGGTTCTTTC
74035167 GGTAATTTTGTAAATCGAGGGTAAAAT
1 GGTAATTTTGTAAATCGAGGGTAAAAT
* * ***
74035194 GGTAATTCTGTAAATCAAGGGTACTTT
1 GGTAATTTTGTAAATCGAGGGTAAAAT
** *
74035221 GGTAATTTTACAAGTCGAGGGTA
1 GGTAATTTTGTAAATCGAGGGTA
74035244 TTTCAATAAT
Statistics
Matches: 40, Mismatches: 10, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
27 40 1.00
ACGTcount: A:0.32, C:0.08, G:0.26, T:0.34
Consensus pattern (27 bp):
GGTAATTTTGTAAATCGAGGGTAAAAT
Found at i:74035295 original size:52 final size:53
Alignment explanation
Indices: 74035205--74035352 Score: 147
Period size: 52 Copynumber: 2.8 Consensus size: 53
74035195 GTAATTCTGT
* * * * *
74035205 AAATCAAGGGTACTTTGGTAATTTTACAAGTCGAGGGTATTTCAATAATTTTGC
1 AAATCAGGGGTACTTTGGTAATTTTAAAACTAG-GGGTATTTCAATAATTTTAC
***
74035259 -AATCAGGGGTA-TTTGGTAATTTTATAAACTAGGGGTATTTTGGTAATTTTAC
1 AAATCAGGGGTACTTTGGTAATTTTA-AAACTAGGGGTATTTCAATAATTTTAC
* * * *
74035311 AAACCAGTGGTATTTTGGTAATTTTACAAACCAGGGGTATTT
1 AAATCAGGGGTACTTTGGTAATTTTA-AAACTAGGGGTATTT
74035353 TGGTGATTTT
Statistics
Matches: 79, Mismatches: 12, Indels: 6
0.81 0.12 0.06
Matches are distributed among these distances:
52 29 0.37
53 23 0.29
54 27 0.34
ACGTcount: A:0.30, C:0.09, G:0.22, T:0.39
Consensus pattern (53 bp):
AAATCAGGGGTACTTTGGTAATTTTAAAACTAGGGGTATTTCAATAATTTTAC
Found at i:74035301 original size:79 final size:81
Alignment explanation
Indices: 74035193--74035388 Score: 229
Period size: 79 Copynumber: 2.4 Consensus size: 81
74035183 GAGGGTAAAA
* * * * *
74035193 TGGTAATTCTGTAAA-TCAAGGGTACTTTGGTAATTTTACAAGTCGAG-GGTATTTCAATAATTT
1 TGGTAATTTTATAAACT-AAGGGTATTTTGGTAATTTTACAA-ACCAGTGGTATTTCAATAATTT
* *
74035256 TGC-AATCAGGGGTA-TT
64 TACAAACCAGGGGTATTT
* ***
74035272 TGGTAATTTTATAAACTAGGGGTATTTTGGTAATTTTACAAACCAGTGGTATTTTGGTAATTTTA
1 TGGTAATTTTATAAACTAAGGGTATTTTGGTAATTTTACAAACCAGTGGTATTTCAATAATTTTA
74035337 CAAACCAGGGGTATTT
66 CAAACCAGGGGTATTT
* *
74035353 TGGTGATTTTATAAACTAAGGGTATTTTAGTAATTT
1 TGGTAATTTTATAAACTAAGGGTATTTTGGTAATTT
74035389 GGTAAACTAA
Statistics
Matches: 99, Mismatches: 14, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
78 3 0.03
79 50 0.51
80 11 0.11
81 35 0.35
ACGTcount: A:0.30, C:0.08, G:0.21, T:0.41
Consensus pattern (81 bp):
TGGTAATTTTATAAACTAAGGGTATTTTGGTAATTTTACAAACCAGTGGTATTTCAATAATTTTA
CAAACCAGGGGTATTT
Found at i:74035306 original size:27 final size:27
Alignment explanation
Indices: 74035263--74035397 Score: 173
Period size: 27 Copynumber: 5.0 Consensus size: 27
74035253 TTTTGCAATC
74035263 AGGGGTA-TTTGGTAATTTTATAAACT
1 AGGGGTATTTTGGTAATTTTATAAACT
* *
74035289 AGGGGTATTTTGGTAATTTTACAAACC
1 AGGGGTATTTTGGTAATTTTATAAACT
* * *
74035316 AGTGGTATTTTGGTAATTTTACAAACC
1 AGGGGTATTTTGGTAATTTTATAAACT
*
74035343 AGGGGTATTTTGGTGATTTTATAAACT
1 AGGGGTATTTTGGTAATTTTATAAACT
* * **
74035370 AAGGGTATTTTAGTAATTTGGTAAACT
1 AGGGGTATTTTGGTAATTTTATAAACT
74035397 A
1 A
74035398 AAGTATTCTA
Statistics
Matches: 96, Mismatches: 12, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
26 7 0.07
27 89 0.93
ACGTcount: A:0.30, C:0.07, G:0.22, T:0.41
Consensus pattern (27 bp):
AGGGGTATTTTGGTAATTTTATAAACT
Found at i:74035347 original size:54 final size:53
Alignment explanation
Indices: 74035211--74035388 Score: 173
Period size: 54 Copynumber: 3.3 Consensus size: 53
74035201 CTGTAAATCA
* ** *** * *
74035211 AGGGTACTTTGGTAATTTTACAAGTC-GAGGGTATTTCAATAATTTTGC-AATC
1 AGGGTATTTTGGTAATTTTACAAACCAG-GGGTATTTTGGTAATTTTACAAACC
* *
74035263 AGGGGTA-TTTGGTAATTTTATAAACTAGGGGTATTTTGGTAATTTTACAAACC
1 A-GGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTACAAACC
* * *
74035316 AGTGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTGATTTTATAAACTA
1 AG-GGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTACAAAC-C
*
74035371 AGGGTATTTTAGTAATTT
1 AGGGTATTTTGGTAATTT
74035389 GGTAAACTAA
Statistics
Matches: 105, Mismatches: 15, Indels: 10
0.81 0.12 0.08
Matches are distributed among these distances:
52 33 0.31
53 14 0.13
54 56 0.53
55 2 0.02
ACGTcount: A:0.29, C:0.08, G:0.22, T:0.41
Consensus pattern (53 bp):
AGGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTACAAACC
Found at i:74037354 original size:6 final size:6
Alignment explanation
Indices: 74037336--74037423 Score: 65
Period size: 6 Copynumber: 14.3 Consensus size: 6
74037326 AAGAAACATT
* *
74037336 ATCAGA A-CTAGA ATCAGA ATCAGA ATCAGA ATTAG- GTGACAGA ATCAGA
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA AT--CAGA ATCAGA
* * *
74037385 ATCAGA ATCAGT ATTAGGTA A-CAGA ATCAAA ATCAGA AT
1 ATCAGA ATCAGA ATCA-G-A ATCAGA ATCAGA ATCAGA AT
74037424 GTGAATGCAA
Statistics
Matches: 64, Mismatches: 10, Indels: 16
0.71 0.11 0.18
Matches are distributed among these distances:
5 4 0.06
6 53 0.83
7 5 0.08
8 2 0.03
ACGTcount: A:0.48, C:0.14, G:0.18, T:0.20
Consensus pattern (6 bp):
ATCAGA
Found at i:74037381 original size:31 final size:31
Alignment explanation
Indices: 74037345--74037423 Score: 131
Period size: 31 Copynumber: 2.5 Consensus size: 31
74037335 TATCAGAACT
*
74037345 AGAATCAGAATCAGAATCAGAATTAGGTGAC
1 AGAATCAGAATCAGAATCAGAATTAGGTAAC
*
74037376 AGAATCAGAATCAGAATCAGTATTAGGTAAC
1 AGAATCAGAATCAGAATCAGAATTAGGTAAC
*
74037407 AGAATCAAAATCAGAAT
1 AGAATCAGAATCAGAAT
74037424 GTGAATGCAA
Statistics
Matches: 45, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 45 1.00
ACGTcount: A:0.48, C:0.13, G:0.19, T:0.20
Consensus pattern (31 bp):
AGAATCAGAATCAGAATCAGAATTAGGTAAC
Found at i:74037590 original size:27 final size:26
Alignment explanation
Indices: 74037543--74037648 Score: 104
Period size: 27 Copynumber: 4.0 Consensus size: 26
74037533 CATGGCTGCT
* ** *
74037543 AGAACAGATATTGTGATAGAGTCACC
1 AGAACAGATATTTTGGCAGAGCCACC
74037569 AGATACAGATATTTTGGCAGAGCCACC
1 AGA-ACAGATATTTTGGCAGAGCCACC
* *
74037596 AGAATAGATATTTGTGGCATAGCCACC
1 AGAACAGATATTT-TGGCAGAGCCACC
* * *
74037623 AGAATCAGATAATGTGGCAAAGCCAC
1 AGAA-CAGATATTTTGGCAGAGCCAC
74037649 TTAACAGAAT
Statistics
Matches: 67, Mismatches: 10, Indels: 5
0.82 0.12 0.06
Matches are distributed among these distances:
26 12 0.18
27 49 0.73
28 6 0.09
ACGTcount: A:0.37, C:0.19, G:0.23, T:0.22
Consensus pattern (26 bp):
AGAACAGATATTTTGGCAGAGCCACC
Found at i:74038242 original size:27 final size:27
Alignment explanation
Indices: 74038212--74038441 Score: 241
Period size: 27 Copynumber: 8.5 Consensus size: 27
74038202 CCCCACGAGA
*
74038212 GTATCTCAGTAATTCTACCCTACAGGG
1 GTATTTCAGTAATTCTACCCTACAGGG
* *
74038239 GTATTT-TGATAATTCTACCTTACAGGG
1 GTATTTCAG-TAATTCTACCCTACAGGG
*
74038266 GTATTTCAGTAATTCTACCCTAGAGGG
1 GTATTTCAGTAATTCTACCCTACAGGG
* *
74038293 GTATTTC-GATGATTCTACCCTACAGGT
1 GTATTTCAG-TAATTCTACCCTACAGGG
* *
74038320 GTATTTCAGTAATTCTACCATACTGGG
1 GTATTTCAGTAATTCTACCCTACAGGG
** *
74038347 GTATTTTGGTAATTCTACCCTATAGGG
1 GTATTTCAGTAATTCTACCCTACAGGG
** *
74038374 GTATTTTGGTAATTCTGCCCTACAGGG
1 GTATTTCAGTAATTCTACCCTACAGGG
* * *
74038401 GTATTTC-GATAATTTTACCTTATAGGG
1 GTATTTCAG-TAATTCTACCCTACAGGG
* *
74038428 TTCTTTCAGTAATT
1 GTATTTCAGTAATT
74038442 TTGTAAATTG
Statistics
Matches: 170, Mismatches: 27, Indels: 12
0.81 0.13 0.06
Matches are distributed among these distances:
26 3 0.02
27 164 0.96
28 3 0.02
ACGTcount: A:0.24, C:0.18, G:0.20, T:0.39
Consensus pattern (27 bp):
GTATTTCAGTAATTCTACCCTACAGGG
Found at i:74038252 original size:54 final size:54
Alignment explanation
Indices: 74038212--74038441 Score: 289
Period size: 54 Copynumber: 4.3 Consensus size: 54
74038202 CCCCACGAGA
* * *
74038212 GTATCTCAGTAATTCTACCCTACAGGGGTATTTTGATAATTCTACCTTACAGGG
1 GTATTTCAGTAATTCTACCCTACAGGGGTATTTCGATAATTCTACCCTACAGGG
* * *
74038266 GTATTTCAGTAATTCTACCCTAGAGGGGTATTTCGATGATTCTACCCTACAGGT
1 GTATTTCAGTAATTCTACCCTACAGGGGTATTTCGATAATTCTACCCTACAGGG
* * * * *
74038320 GTATTTCAGTAATTCTACCATACTGGGGTATTTTGGTAATTCTACCCTATAGGG
1 GTATTTCAGTAATTCTACCCTACAGGGGTATTTCGATAATTCTACCCTACAGGG
** * * * *
74038374 GTATTTTGGTAATTCTGCCCTACAGGGGTATTTCGATAATTTTACCTTATAGGG
1 GTATTTCAGTAATTCTACCCTACAGGGGTATTTCGATAATTCTACCCTACAGGG
* *
74038428 TTCTTTCAGTAATT
1 GTATTTCAGTAATT
74038442 TTGTAAATTG
Statistics
Matches: 149, Mismatches: 27, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
54 149 1.00
ACGTcount: A:0.24, C:0.18, G:0.20, T:0.39
Consensus pattern (54 bp):
GTATTTCAGTAATTCTACCCTACAGGGGTATTTCGATAATTCTACCCTACAGGG
Found at i:74038316 original size:81 final size:81
Alignment explanation
Indices: 74038221--74038441 Score: 282
Period size: 81 Copynumber: 2.7 Consensus size: 81
74038211 AGTATCTCAG
74038221 TAATTCTACCCTACAGGGGTATTTTGATAATTCTACCTTACAGGGGTATTTCAGTAATTCTACCC
1 TAATTCTACCCTACAGGGGTATTTTGATAATTCTACCTTACAGGGGTATTTCAGTAATTCTACCC
74038286 TAGAGGGGTATTTCGA
66 TAGAGGGGTATTTCGA
* * * * * **
74038302 TGATTCTACCCTACAGGTGTA-TTTCAGTAATTCTACCATACTGGGGTATTTTGGTAATTCTACC
1 TAATTCTACCCTACAGGGGTATTTTGA-TAATTCTACCTTACAGGGGTATTTCAGTAATTCTACC
* * *
74038366 CTATAGGGGTATTTTGG
65 CTAGAGGGGTATTTCGA
* * * * * *
74038383 TAATTCTGCCCTACAGGGGTATTTCGATAATTTTACCTTATAGGGTTCTTTCAGTAATT
1 TAATTCTACCCTACAGGGGTATTTTGATAATTCTACCTTACAGGGGTATTTCAGTAATT
74038442 TTGTAAATTG
Statistics
Matches: 115, Mismatches: 23, Indels: 4
0.81 0.16 0.03
Matches are distributed among these distances:
80 4 0.03
81 108 0.94
82 3 0.03
ACGTcount: A:0.24, C:0.18, G:0.19, T:0.39
Consensus pattern (81 bp):
TAATTCTACCCTACAGGGGTATTTTGATAATTCTACCTTACAGGGGTATTTCAGTAATTCTACCC
TAGAGGGGTATTTCGA
Found at i:74038549 original size:53 final size:54
Alignment explanation
Indices: 74038473--74038657 Score: 167
Period size: 54 Copynumber: 3.4 Consensus size: 54
74038463 GTAATTCTGT
* * * * *
74038473 AAATCAAGGGTACTTCGGTAATTTTAC-AAGTTGAGAGTATTTTAATAATTTTAC
1 AAATCAGGGGTATTTTGGTAATTTTACAAACTAG-GAGTATTTTAATAATTTTAC
* * **
74038527 -AATCAGGGGTATTTTGGTAATTTTATAAACTAGGGGTATTTTTGTAATTTTAC
1 AAATCAGGGGTATTTTGGTAATTTTACAAACTAGGAGTATTTTAATAATTTTAC
* * * * ** * *
74038580 AAACCAGTGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTGATTTTAT
1 AAATCAGGGGTATTTTGGTAATTTTACAAACTAGGAGTATTTTAATAATTTTAC
* * *
74038634 AAACCAAGGGTATTTTAGTAATTT
1 AAATCAGGGGTATTTTGGTAATTT
74038658 GGTAAACTAA
Statistics
Matches: 110, Mismatches: 19, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
53 39 0.35
54 71 0.65
ACGTcount: A:0.31, C:0.08, G:0.19, T:0.41
Consensus pattern (54 bp):
AAATCAGGGGTATTTTGGTAATTTTACAAACTAGGAGTATTTTAATAATTTTAC
Found at i:74038567 original size:27 final size:27
Alignment explanation
Indices: 74038509--74038657 Score: 192
Period size: 27 Copynumber: 5.6 Consensus size: 27
74038499 CAAGTTGAGA
** *
74038509 GTATTTTAATAATTTTAC-AATCAGGG
1 GTATTTTGGTAATTTTACAAACCAGGG
* *
74038535 GTATTTTGGTAATTTTATAAACTAGGG
1 GTATTTTGGTAATTTTACAAACCAGGG
* *
74038562 GTATTTTTGTAATTTTACAAACCAGTG
1 GTATTTTGGTAATTTTACAAACCAGGG
74038589 GTATTTTGGTAATTTTACAAACCAGGG
1 GTATTTTGGTAATTTTACAAACCAGGG
* * *
74038616 GTATTTTGGTGATTTTATAAACCAAGG
1 GTATTTTGGTAATTTTACAAACCAGGG
*
74038643 GTATTTTAGTAATTT
1 GTATTTTGGTAATTT
74038658 GGTAAACTAA
Statistics
Matches: 106, Mismatches: 16, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
26 15 0.14
27 91 0.86
ACGTcount: A:0.30, C:0.07, G:0.19, T:0.44
Consensus pattern (27 bp):
GTATTTTGGTAATTTTACAAACCAGGG
Found at i:74038645 original size:81 final size:80
Alignment explanation
Indices: 74038509--74038657 Score: 226
Period size: 81 Copynumber: 1.9 Consensus size: 80
74038499 CAAGTTGAGA
* * * *
74038509 GTATTTTAATAATTTTACAATCAGGGGTATTTTGGTAATTTTATAAACTAGGGGTATTTTTGTAA
1 GTATTTTAATAATTTTACAACCAGGGGTATTTTGGTAATTTTATAAACCAAGGGTATTTTAGTAA
74038574 TTTTACAAACCAGTG
66 TTTTACAAACCAGTG
** *
74038589 GTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTGATTTTATAAACCAAGGGTATTTTAGTA
1 GTATTTTAATAATTTTAC-AACCAGGGGTATTTTGGTAATTTTATAAACCAAGGGTATTTTAGTA
74038654 ATTT
65 ATTT
74038658 GGTAAACTAA
Statistics
Matches: 61, Mismatches: 7, Indels: 1
0.88 0.10 0.01
Matches are distributed among these distances:
80 16 0.26
81 45 0.74
ACGTcount: A:0.30, C:0.07, G:0.19, T:0.44
Consensus pattern (80 bp):
GTATTTTAATAATTTTACAACCAGGGGTATTTTGGTAATTTTATAAACCAAGGGTATTTTAGTAA
TTTTACAAACCAGTG
Found at i:74047622 original size:14 final size:14
Alignment explanation
Indices: 74047599--74047631 Score: 57
Period size: 14 Copynumber: 2.4 Consensus size: 14
74047589 GAATTAGGGC
*
74047599 AATTTTGTAGCTAA
1 AATTTCGTAGCTAA
74047613 AATTTCGTAGCTAA
1 AATTTCGTAGCTAA
74047627 AATTT
1 AATTT
74047632 AGTTAATTTA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.36, C:0.09, G:0.12, T:0.42
Consensus pattern (14 bp):
AATTTCGTAGCTAA
Found at i:74047881 original size:6 final size:6
Alignment explanation
Indices: 74047848--74047906 Score: 61
Period size: 6 Copynumber: 10.2 Consensus size: 6
74047838 TGATCTCCGT
* * *
74047848 AATTAA AA-T-A AA-TAA AACTAA CATTAA AATTAA AAATAA AGATTAA
1 AATTAA AATTAA AATTAA AATTAA AATTAA AATTAA AATTAA A-ATTAA
74047894 AATTAA AATTAA A
1 AATTAA AATTAA A
74047907 GAAAATATAA
Statistics
Matches: 45, Mismatches: 5, Indels: 6
0.80 0.09 0.11
Matches are distributed among these distances:
4 4 0.09
5 4 0.09
6 32 0.71
7 5 0.11
ACGTcount: A:0.68, C:0.03, G:0.02, T:0.27
Consensus pattern (6 bp):
AATTAA
Found at i:74047892 original size:19 final size:19
Alignment explanation
Indices: 74047870--74047908 Score: 69
Period size: 19 Copynumber: 2.1 Consensus size: 19
74047860 TAAAACTAAC
74047870 ATTAAAATTAAAAATAAAG
1 ATTAAAATTAAAAATAAAG
*
74047889 ATTAAAATTAAAATTAAAG
1 ATTAAAATTAAAAATAAAG
74047908 A
1 A
74047909 AAATATAAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.67, C:0.00, G:0.05, T:0.28
Consensus pattern (19 bp):
ATTAAAATTAAAAATAAAG
Found at i:74047902 original size:25 final size:24
Alignment explanation
Indices: 74047857--74047937 Score: 76
Period size: 24 Copynumber: 3.3 Consensus size: 24
74047847 TAATTAAAAT
* *
74047857 AAATAAAACTAACATTAAAATTAA
1 AAATAAAATTAAAATTAAAATTAA
74047881 AAATAAAGATTAAAATTAAAATTAA
1 AAATAAA-ATTAAAATTAAAATTAA
* * *
74047906 AGAA-AATATAAAAATGAGAAA-TAA
1 A-AATAAAATTAAAATTA-AAATTAA
74047930 AAATAAAA
1 AAATAAAA
74047938 CTAAGATAAG
Statistics
Matches: 47, Mismatches: 6, Indels: 8
0.77 0.10 0.13
Matches are distributed among these distances:
23 2 0.04
24 22 0.47
25 21 0.45
26 2 0.04
ACGTcount: A:0.70, C:0.02, G:0.05, T:0.22
Consensus pattern (24 bp):
AAATAAAATTAAAATTAAAATTAA
Found at i:74069966 original size:21 final size:21
Alignment explanation
Indices: 74069940--74069980 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
74069930 TACATATCAC
74069940 TATTAAACTACTTGTATTTTA
1 TATTAAACTACTTGTATTTTA
* *
74069961 TATTAAATTATTTGTATTTT
1 TATTAAACTACTTGTATTTT
74069981 CTGTATTCTA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.32, C:0.05, G:0.05, T:0.59
Consensus pattern (21 bp):
TATTAAACTACTTGTATTTTA
Found at i:74070903 original size:123 final size:123
Alignment explanation
Indices: 74070682--74070903 Score: 284
Period size: 123 Copynumber: 1.8 Consensus size: 123
74070672 TTTCGAGAAC
* * * * ** * *
74070682 AAGGCAATGTTTCGTATTTGGAAATTCCGAAAATCGTGCCTTAGGGTACTGGGTTTCGATTTTCT
1 AAGGCAATATTTCATATTTGAAAATTCCGAAAATCGTGCCCTAACGTACTGGGTTTCGATTTACC
* * * * *
74070747 GTTTGATCAAATGACCAAATATCCTTTTTAAATTCCGTCTTTGTTTTCTTCAACAAAA
66 GATTGACCAAATAACCAAATACCCTTTTAAAATTCCGTCTTTGTTTTCTTCAACAAAA
74070805 AAGGCAATATTTCATATTTGAAAATT-CGAGAAATCGTGCCCTAACGTACTGGGTTTCGATTTAC
1 AAGGCAATATTTCATATTTGAAAATTCCGA-AAATCGTGCCCTAACGTACTGGGTTTCGATTTAC
***
74070869 CGATTGACCAAATAATTGAATACCCTTTTAAAATT
65 CGATTGACCAAATAACCAAATACCCTTTTAAAATT
74070904 TCAATGCATG
Statistics
Matches: 82, Mismatches: 16, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
122 3 0.04
123 79 0.96
ACGTcount: A:0.30, C:0.17, G:0.16, T:0.36
Consensus pattern (123 bp):
AAGGCAATATTTCATATTTGAAAATTCCGAAAATCGTGCCCTAACGTACTGGGTTTCGATTTACC
GATTGACCAAATAACCAAATACCCTTTTAAAATTCCGTCTTTGTTTTCTTCAACAAAA
Found at i:74081268 original size:178 final size:179
Alignment explanation
Indices: 74080625--74081989 Score: 1587
Period size: 178 Copynumber: 7.7 Consensus size: 179
74080615 GTGAATTCAC
* * ** *
74080625 AGATCTTATCTCCCTGAGATAGTAGTGGAGCAGATTGAAGATGATGAATCTTATCTT-TCTGAGA
1 AGATCTTATCTCCCTGAAATAGTAGTGGAGCAGATCGAAGATGGCGAATCTTATCTTCTC-GAGG
* * *
74080689 TAGCAGGGGAGCAGATTTTAGCCACCAGTCTTATC-TCTCTGAGGTAGCAAAAGAGCAGGTTGAA
65 TAGCAGGGGAGCAGATTTTAGCCACCAGCCTTATCTTCTCTGAGGTAGCAAGAGAGCAGGCTGAA
* * *
74080753 GATTGTAGTCTTATCTTCCTGGGGTAGTAAGGAAGCAGACTGAAGATTGT
130 GATTGTAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTGAAGATTGA
* ** * * *
74080803 AGATCTTATCT-CCTTAAGCAGTAGTGGAACAGATCGAAGATGGCGAATCTTATCTTTTAGAGGT
1 AGATCTTATCTCCCTGAAATAGTAGTGGAGCAGATCGAAGATGGCGAATCTTATCTTCTCGAGGT
* * * * *
74080867 AGCAGGGGAGTAGATTTTAGCCACCAGCCTTATCTT-TTTGAGGTAGCAAAAAAGCAGGTTGAAG
66 AGCAGGGGAGCAGATTTTAGCCACCAGCCTTATCTTCTCTGAGGTAGCAAGAGAGCAGGCTGAAG
* * * *
74080931 ATTGTAGTCTTATCTTCCTAAGGTAGTATGGAAGCAGACTGAAGATTGT
131 ATTGTAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTGAAGATTGA
** * * * * *
74080980 AGATCTT-TCTCCCT-AAGCAGTAGTGGAGCAAACCGAAGATGGCAAATCTTATCTTTTCGGGGT
1 AGATCTTATCTCCCTGAAATAGTAGTGGAGCAGATCGAAGATGGCGAATCTTATCTTCTCGAGGT
* * * * * *
74081043 AGCAGGCGAGCAGATTTCAGCCACTAGCCTTATC-TCCCTTAGGTAGCAAGGGAGCAGGCTGAAG
66 AGCAGGGGAGCAGATTTTAGCCACCAGCCTTATCTTCTCTGAGGTAGCAAGAGAGCAGGCTGAAG
* * *
74081107 ATTATTGTCTTATCTTCCTGAGGTAGCAAGGAAGCAAACTGAAGATTGA
131 ATTGTAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTGAAGATTGA
* * * ** * *
74081156 AGATCTTATCTCCCTGAAATAGCAGTGAAGCAGATCCAAGACAGTGAATCTTATCTTCTCGAGGC
1 AGATCTTATCTCCCTGAAATAGTAGTGGAGCAGATCGAAGATGGCGAATCTTATCTTCTCGAGGT
* * * *
74081221 AGCAAGGAAGCAGATTTCAGCCACTAGCCTTATCTTC-CTGAGGTAGCAA-AGGAGCAGGCTGAA
66 AGCAGGGGAGCAGATTTTAGCCACCAGCCTTATCTTCTCTGAGGTAGCAAGA-GAGCAGGCTGAA
* * * *
74081284 GATTATAGTCTTATCTTCCTGAGGTAGCAAAGAAGCAGATTGAAGA-TCA
130 GATTGTAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTGAAGATTGA
** * * * *
74081333 CAGATCTTATCTCCCT-AAGCAGTAGTGGAGCAGATCAAAAATGACAAATCTTATCTTCTCGAGG
1 -AGATCTTATCTCCCTGAAATAGTAGTGGAGCAGATCGAAGATGGCGAATCTTATCTTCTCGAGG
* *
74081397 TAGCAGGGGAGCAAATTTTAGCCACCAGCCTTATC-TCTCTGAGGTAGCAAGAGAGTAGGCTGAA
65 TAGCAGGGGAGCAGATTTTAGCCACCAGCCTTATCTTCTCTGAGGTAGCAAGAGAGCAGGCTGAA
** *
74081461 GATTGTAGTCTTATCTTCCAAAGGTAGCAAGGAAGCAGATTGAAGATTGA
130 GATTGTAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTGAAGATTGA
* * * * * * * * *
74081511 ATATCTTATCTCCTTCAGATAGCAGTGGAGTAGATTGAAGATGGCGAATCTTATCTTCCCGAGAT
1 AGATCTTATCTCCCTGAAATAGTAGTGGAGCAGATCGAAGATGGCGAATCTTATCTTCTCGAGGT
* * * * *
74081576 AGTAGAGGAGTAAATTTTAGCCACCAGCCTTATC-TCTCTGAGGTAGCAAGAGAGCAGGTTGAAG
66 AGCAGGGGAGCAGATTTTAGCCACCAGCCTTATCTTCTCTGAGGTAGCAAGAGAGCAGGCTGAAG
* * * * *
74081640 ATTATAGTCTTATCTTCCTGAGGTAGCTAGGAAACAGATTGATGATTGA
131 ATTGTAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTGAAGATTGA
* * * *
74081689 AGATCTTATCTCCTTGAGATAGTAATGGAGCAGATCGAAGATGGCGAATCTTATCTTCCCGAGGT
1 AGATCTTATCTCCCTGAAATAGTAGTGGAGCAGATCGAAGATGGCGAATCTTATCTTCTCGAGGT
* * *
74081754 AGTAGGGGAGCAGATTTTAGCCACCAGCCTTAT-TTCTCTAAGGTAGCAAGAGAGCAGG-TCAAA
66 AGCAGGGGAGCAGATTTTAGCCACCAGCCTTATCTTCTCTGAGGTAGCAAGAGAGCAGGCT-GAA
74081817 GATTGTAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTGAAGATTGA
130 GATTGTAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTGAAGATTGA
* * * * * * *
74081867 AGATCTTGTCT-CCTCGAGATAGCAGTGGGGCTGATCGAAGATGACGAATCTTATCTTCCCGAGG
1 AGATCTTATCTCCCT-GAAATAGTAGTGGAGCAGATCGAAGATGGCGAATCTTATCTTCTCGAGG
* * ** *
74081931 TAGTAGGGGAGCAGATTTTAGTCAATATCCTTATCTTCTC-GAGGTAAGCAACG-GAGCAG
65 TAGCAGGGGAGCAGATTTTAGCCACCAGCCTTATCTTCTCTGAGGT-AGCAA-GAGAGCAG
74081990 ATTTAAGTCA
Statistics
Matches: 1026, Mismatches: 142, Indels: 37
0.85 0.12 0.03
Matches are distributed among these distances:
175 1 0.00
176 148 0.14
177 311 0.30
178 547 0.53
179 18 0.02
180 1 0.00
ACGTcount: A:0.30, C:0.18, G:0.25, T:0.27
Consensus pattern (179 bp):
AGATCTTATCTCCCTGAAATAGTAGTGGAGCAGATCGAAGATGGCGAATCTTATCTTCTCGAGGT
AGCAGGGGAGCAGATTTTAGCCACCAGCCTTATCTTCTCTGAGGTAGCAAGAGAGCAGGCTGAAG
ATTGTAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTGAAGATTGA
Found at i:74081863 original size:44 final size:44
Alignment explanation
Indices: 74080715--74081865 Score: 294
Period size: 44 Copynumber: 26.0 Consensus size: 44
74080705 TTTAGCCACC
* *
74080715 AGTCTTATC-TCTCTGAGGTAGCAA-AAGAGCAGGTTGAAGATTGT
1 AGTCTTATCTTC-CTGAGGTAGCAAGGA-AGCAGATTGAAGATTGT
* * *
74080759 AGTCTTATCTTCCTGGGGTAGTAAGGAAGCAGACTGAAGATTGT
1 AGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGATTGAAGATTGT
* * * * * * * *
74080803 AGATCTTATC-TCCTTAAGCAGTAGTGGAA-CAGATCGAAGATGGCG
1 AG-TCTTATCTTCCTGAGGTAGCA-AGGAAGCAGATTGAAGATTG-T
* * * * * ** *****
74080848 AATCTTATCTT-TTAGAGGTAGCAGGGGAGTAGATTTTAGCCACC
1 AGTCTTATCTTCCT-GAGGTAGCAAGGAAGCAGATTGAAGATTGT
* ** ** *
74080892 AGCCTTATCTTTTTGAGGTAGCAAAAAAGCAGGTTGAAGATTGT
1 AGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGATTGAAGATTGT
* * * *
74080936 AGTCTTATCTTCCTAAGGTAGTATGGAAGCAGACTGAAGATTGT
1 AGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGATTGAAGATTGT
* * * * ** * *
74080980 AGATCTT-TCTCCCTAAGCAGTAG--TGG-AGCAAACCGAAGATGGCA
1 AG-TCTTATCTTCCTGAG--GTAGCAAGGAAGCAGATTGAAGATTG-T
* * * * ** ****
74081024 AATCTTATCTT-TTCGGGGTAGC-AGGCGAGCAGATTTCAGCCACT
1 AGTCTTATCTTCCT-GAGGTAGCAAGG-AAGCAGATTGAAGATTGT
* * * * ** *
74081068 AGCCTTATCTCCCTTAGGTAGCAAGGGAGCAGGCTGAAGATTAT
1 AGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGATTGAAGATTGT
* * * *
74081112 TGTCTTATCTTCCTGAGGTAGCAAGGAAGCAAACTGAAGATTGA
1 AGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGATTGAAGATTGT
* ** ** **
74081156 AGATCTTATCTCCCTGAAATAGC-AGTGAAGCAGATCCAAGACAGT
1 AG-TCTTATCTTCCTGAGGTAGCAAG-GAAGCAGATTGAAGATTGT
* * ** ****
74081201 GAATCTTATCTT-CTCGAGGCAGCAAGGAAGCAGATTTCAGCCACT
1 -AGTCTTATCTTCCT-GAGGTAGCAAGGAAGCAGATTGAAGATTGT
* ** *
74081246 AGCCTTATCTTCCTGAGGTAGCAAAGG-AGCAGGCTGAAGATTAT
1 AGTCTTATCTTCCTGAGGTAGC-AAGGAAGCAGATTGAAGATTGT
* ***
74081290 AGTCTTATCTTCCTGAGGTAGCAAAGAAGCAGATTGAAGATCAC
1 AGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGATTGAAGATTGT
* * * * * * *
74081334 AGATCTTATCTCCCTAAGCAGTAG--TGG-AGCAGA-TCAAAAATGACA
1 AG-TCTTATCTTCCTGAG--GTAGCAAGGAAGCAGATTGAAGATTG--T
* * * * ** *****
74081379 AATCTTATCTT-CTCGAGGTAGCAGGGGAGCAAATTTTAGCCACC
1 AGTCTTATCTTCCT-GAGGTAGCAAGGAAGCAGATTGAAGATTGT
* * **
74081423 AGCCTTATC-TCTCTGAGGTAGCAA-GAGAGTAGGCTGAAGATTGT
1 AGTCTTATCTTC-CTGAGGTAGCAAGGA-AGCAGATTGAAGATTGT
**
74081467 AGTCTTATCTTCCAAAGGTAGCAAGGAAGCAGATTGAAGATTGAAT
1 AGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGATTGAAGATTG--T
* * * * * *
74081513 A-TCTTATC-TCCTTCAGATAGC-AGTGGAGTAGATTGAAGATGGCG
1 AGTCTTATCTTCC-TGAGGTAGCAAG-GAAGCAGATTGAAGATTG-T
* * * * * * ** *****
74081557 AATCTTATCTTCCCGAGATAGTAGAGG-AGTAAATTTTAGCCACC
1 AGTCTTATCTTCCTGAGGTAGCA-AGGAAGCAGATTGAAGATTGT
* * *
74081601 AGCCTTATC-TCTCTGAGGTAGCAA-GAGAGCAGGTTGAAGATTAT
1 AGTCTTATCTTC-CTGAGGTAGCAAGGA-AGCAGATTGAAGATTGT
* * * *
74081645 AGTCTTATCTTCCTGAGGTAGCTAGGAAACAGATTGATGATTGA
1 AGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGATTGAAGATTGT
* * * * *
74081689 AGATCTTATC-TCCTTGAGATAGTAATGG-AGCAGATCGAAGATGGCG
1 AG-TCTTATCTTCC-TGAGGTAGCAA-GGAAGCAGATTGAAGATTG-T
* * * * * ** *****
74081735 AATCTTATCTTCCCGAGGTAGTAGGGGAGCAGATTTTAGCCACC
1 AGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGATTGAAGATTGT
* * * **
74081779 AGCCTTAT-TTCTCTAAGGTAGCAA-GAGAGCAGGTCAAAGATTGT
1 AGTCTTATCTTC-CTGAGGTAGCAAGGA-AGCAGATTGAAGATTGT
*
74081823 AGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTGAAGATTG
1 AGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGATTGAAGATTG
74081866 AAGATCTTGT
Statistics
Matches: 776, Mismatches: 265, Indels: 132
0.66 0.23 0.11
Matches are distributed among these distances:
42 9 0.01
43 38 0.05
44 460 0.59
45 242 0.31
46 21 0.03
47 6 0.01
ACGTcount: A:0.30, C:0.18, G:0.25, T:0.27
Consensus pattern (44 bp):
AGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGATTGAAGATTGT
Found at i:74081999 original size:45 final size:44
Alignment explanation
Indices: 74081916--74082011 Score: 120
Period size: 45 Copynumber: 2.2 Consensus size: 44
74081906 GATGACGAAT
* ** * *
74081916 CTTATCTTCCCGAGGTAGTAGGGGAGCAGATTTTAGTCAATATC
1 CTTATCTTCCCGAGGTAGCAACGGAGCAGATTTAAGTCAATAGC
* *
74081960 CTTATCTTCTCGAGGTAAGCAACGGAGCAGATTTAAGTCACTAGC
1 CTTATCTTCCCGAGGT-AGCAACGGAGCAGATTTAAGTCAATAGC
74082005 CTTATCT
1 CTTATCT
74082012 CCCTGAAGTT
Statistics
Matches: 44, Mismatches: 7, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
44 15 0.34
45 29 0.66
ACGTcount: A:0.26, C:0.21, G:0.22, T:0.31
Consensus pattern (44 bp):
CTTATCTTCCCGAGGTAGCAACGGAGCAGATTTAAGTCAATAGC
Found at i:74083699 original size:21 final size:21
Alignment explanation
Indices: 74083673--74083715 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 21
74083663 TACATATCAC
74083673 TATTAAACTACTTGTATTTTA
1 TATTAAACTACTTGTATTTTA
* *
74083694 TATTAAATTATTTGTATTTTA
1 TATTAAACTACTTGTATTTTA
74083715 T
1 T
74083716 GTATTCTATC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.33, C:0.05, G:0.05, T:0.58
Consensus pattern (21 bp):
TATTAAACTACTTGTATTTTA
Found at i:74084625 original size:123 final size:123
Alignment explanation
Indices: 74084404--74084625 Score: 284
Period size: 123 Copynumber: 1.8 Consensus size: 123
74084394 TTTTGAGAAC
* ** * * * * *
74084404 AAGGCAATGTTTTGTATTTGGAAATTCAGGAAATTGTGCCCTAGCATGCTGGGTTTTGATTTTCC
1 AAGGCAATATTTCATATTTGGAAATTCAGGAAATCGTGCCCTAACATACTGGGTTTCGATTTACC
* * * *
74084469 GTTTGATCAAATAACCAAATATCCTTTTTAAATTCCGTCTGTGTTTTCTTCAACAAAA
66 GATTGACCAAATAACCAAATACCCTTTTAAAATTCCGTCTGTGTTTTCTTCAACAAAA
*
74084527 AAGGCAATATTTCATATTTGGAAATTC-GAGAAATCGTGCCCTAACGTACTGGGTTTCGATTTAC
1 AAGGCAATATTTCATATTTGGAAATTCAG-GAAATCGTGCCCTAACATACTGGGTTTCGATTTAC
***
74084591 CGATTGACCAAATAATTGAATACCCTTTTAAAATT
65 CGATTGACCAAATAACCAAATACCCTTTTAAAATT
74084626 TCAATGCATG
Statistics
Matches: 82, Mismatches: 16, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
122 1 0.01
123 81 0.99
ACGTcount: A:0.30, C:0.17, G:0.17, T:0.36
Consensus pattern (123 bp):
AAGGCAATATTTCATATTTGGAAATTCAGGAAATCGTGCCCTAACATACTGGGTTTCGATTTACC
GATTGACCAAATAACCAAATACCCTTTTAAAATTCCGTCTGTGTTTTCTTCAACAAAA
Found at i:74086082 original size:42 final size:42
Alignment explanation
Indices: 74086035--74086151 Score: 128
Period size: 43 Copynumber: 2.8 Consensus size: 42
74086025 TGTGTTATCG
*
74086035 GTAAGACCATGTCTGGGACGTTGGCATCGTATTTGATTTCAT
1 GTAAGACCATGTCTGGGACGTTGGCATCGTATTTGATTACAT
* * *
74086077 GTAAGACCCTGCCTGGGACAG-TGGCATCGATTTTTGATTACAT
1 GTAAGACCATGTCTGGGAC-GTTGGCATCG-TATTTGATTACAT
** * * *
74086120 GTAAGACCACATCTAGGATGTTGGCATTGTAT
1 GTAAGACCATGTCTGGGACGTTGGCATCGTAT
74086152 GAGCTTTCCG
Statistics
Matches: 60, Mismatches: 12, Indels: 6
0.77 0.15 0.08
Matches are distributed among these distances:
42 28 0.47
43 32 0.53
ACGTcount: A:0.24, C:0.18, G:0.26, T:0.32
Consensus pattern (42 bp):
GTAAGACCATGTCTGGGACGTTGGCATCGTATTTGATTACAT
Found at i:74086126 original size:43 final size:42
Alignment explanation
Indices: 74086035--74086128 Score: 127
Period size: 42 Copynumber: 2.2 Consensus size: 42
74086025 TGTGTTATCG
* *
74086035 GTAAGACCATGTCTGGGACGTTGGCATCGTATTTGATTTCAT
1 GTAAGACCATGCCTGGGACGTTGGCATCGTATTTGATTACAT
* *
74086077 GTAAGACCCTGCCTGGGACAG-TGGCATCGATTTTTGATTACAT
1 GTAAGACCATGCCTGGGAC-GTTGGCATCG-TATTTGATTACAT
74086120 GTAAGACCA
1 GTAAGACCA
74086129 CATCTAGGAT
Statistics
Matches: 45, Mismatches: 5, Indels: 3
0.85 0.09 0.06
Matches are distributed among these distances:
42 25 0.56
43 20 0.44
ACGTcount: A:0.24, C:0.19, G:0.26, T:0.31
Consensus pattern (42 bp):
GTAAGACCATGCCTGGGACGTTGGCATCGTATTTGATTACAT
Found at i:74097418 original size:21 final size:21
Alignment explanation
Indices: 74097394--74097435 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
74097384 CTATTTTAGT
*
74097394 CCATTATAATTCCAATTTGAC
1 CCATGATAATTCCAATTTGAC
**
74097415 CCATGATAATTTTAATTTGAC
1 CCATGATAATTCCAATTTGAC
74097436 ACTTAACATG
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.33, C:0.19, G:0.07, T:0.40
Consensus pattern (21 bp):
CCATGATAATTCCAATTTGAC
Found at i:74100290 original size:18 final size:18
Alignment explanation
Indices: 74100267--74100303 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
74100257 CAATTGAAGC
74100267 GTCGAAATTTACACATAG
1 GTCGAAATTTACACATAG
74100285 GTCGAAATTTACACATAG
1 GTCGAAATTTACACATAG
74100303 G
1 G
74100304 CCTGTTGGAC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.38, C:0.16, G:0.19, T:0.27
Consensus pattern (18 bp):
GTCGAAATTTACACATAG
Found at i:74106382 original size:28 final size:28
Alignment explanation
Indices: 74106340--74107221 Score: 1721
Period size: 28 Copynumber: 31.5 Consensus size: 28
74106330 TAAATTGTAC
*
74106340 AGCACTAAGTATGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAGTTTGATTATGT
74106368 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAGTTTGATTATGT
74106396 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAGTTTGATTATGT
74106424 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAGTTTGATTATGT
74106452 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAGTTTGATTATGT
74106480 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAGTTTGATTATGT
74106508 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAGTTTGATTATGT
74106536 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAGTTTGATTATGT
74106564 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAGTTTGATTATGT
74106592 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAGTTTGATTATGT
74106620 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAGTTTGATTATGT
74106648 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAGTTTGATTATGT
74106676 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAGTTTGATTATGT
74106704 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAGTTTGATTATGT
74106732 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAGTTTGATTATGT
74106760 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAGTTTGATTATGT
74106788 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAGTTTGATTATGT
74106816 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAGTTTGATTATGT
74106844 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAGTTTGATTATGT
74106872 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAGTTTGATTATGT
74106900 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAGTTTGATTATGT
74106928 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAGTTTGATTATGT
74106956 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAGTTTGATTATGT
74106984 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAGTTTGATTATGT
74107012 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAGTTTGATTATGT
74107040 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAGTTTGATTATGT
74107068 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAGTTTGATTATGT
74107096 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAGTTTGATTATGT
74107124 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAGTTTGATTATGT
*
74107152 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATTATGT
*
74107180 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATTATGT
*
74107207 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
74107222 GACTTAATAT
Statistics
Matches: 851, Mismatches: 3, Indels: 1
1.00 0.00 0.00
Matches are distributed among these distances:
27 24 0.03
28 827 0.97
ACGTcount: A:0.25, C:0.11, G:0.28, T:0.35
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATTATGT
Found at i:74109593 original size:6 final size:6
Alignment explanation
Indices: 74109584--74109632 Score: 80
Period size: 6 Copynumber: 8.2 Consensus size: 6
74109574 TTTCAAAACC
* *
74109584 AAAGGG AAAGGG AAAGGG AAAGGG AAAGGG AAAGGG GAAGGG GAAGGG
1 AAAGGG AAAGGG AAAGGG AAAGGG AAAGGG AAAGGG AAAGGG AAAGGG
74109632 A
1 A
74109633 TCGTATGGGT
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
6 41 1.00
ACGTcount: A:0.47, C:0.00, G:0.53, T:0.00
Consensus pattern (6 bp):
AAAGGG
Found at i:74109887 original size:7 final size:6
Alignment explanation
Indices: 74109854--74109887 Score: 50
Period size: 6 Copynumber: 5.3 Consensus size: 6
74109844 TATTTTATAC
74109854 ATTTTT ATTTTT ATATTTT ATTTTT ATTTATT AT
1 ATTTTT ATTTTT AT-TTTT ATTTTT ATTT-TT AT
74109888 CAATGTTTTT
Statistics
Matches: 26, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
6 16 0.62
7 10 0.38
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (6 bp):
ATTTTT
Found at i:74109887 original size:13 final size:12
Alignment explanation
Indices: 74109854--74109887 Score: 50
Period size: 13 Copynumber: 2.7 Consensus size: 12
74109844 TATTTTATAC
74109854 ATTTTTATTTTT
1 ATTTTTATTTTT
74109866 ATATTTTATTTTT
1 AT-TTTTATTTTT
74109879 ATTTATTAT
1 ATTT-TTAT
74109888 CAATGTTTTT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
12 4 0.20
13 16 0.80
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (12 bp):
ATTTTTATTTTT
Found at i:74109897 original size:20 final size:20
Alignment explanation
Indices: 74109874--74109917 Score: 81
Period size: 20 Copynumber: 2.2 Consensus size: 20
74109864 TTATATTTTA
74109874 TTTTTATTTA-TTATCAATG
1 TTTTTATTTATTTATCAATG
74109893 TTTTTATTTATTTATCAATG
1 TTTTTATTTATTTATCAATG
74109913 TTTTT
1 TTTTT
74109918 TTAAAATCTA
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
19 10 0.42
20 14 0.58
ACGTcount: A:0.23, C:0.05, G:0.05, T:0.68
Consensus pattern (20 bp):
TTTTTATTTATTTATCAATG
Found at i:74110575 original size:48 final size:46
Alignment explanation
Indices: 74110471--74110600 Score: 154
Period size: 48 Copynumber: 2.7 Consensus size: 46
74110461 TCAACATCCA
* *
74110471 TATGATGTTTTTTGGGATTTAAGGTTTAGGGG-TTATAGATTAGTGTT
1 TATGAT-TTTTTTGGG-TTTAAGGTTTAGGGGTTTATAGACTAGTGTC
* * *
74110518 TAGGGTTTTTTTGGGTTTAGGGGTTTAGGGGTTATATAGACTAGTGTC
1 TATGATTTTTTTGGGTTTA-AGGTTTAGGGGTT-TATAGACTAGTGTC
*
74110566 TATGATTTTTTAGGGGTTTAAGGTTTAGGGGTTTA
1 TATGATTTTTT-TGGGTTTAAGGTTTAGGGGTTTA
74110601 AAGTTTTAGG
Statistics
Matches: 70, Mismatches: 9, Indels: 8
0.80 0.10 0.09
Matches are distributed among these distances:
45 4 0.06
46 19 0.27
47 7 0.10
48 33 0.47
49 7 0.10
ACGTcount: A:0.19, C:0.02, G:0.32, T:0.47
Consensus pattern (46 bp):
TATGATTTTTTTGGGTTTAAGGTTTAGGGGTTTATAGACTAGTGTC
Found at i:74110594 original size:15 final size:16
Alignment explanation
Indices: 74110574--74110614 Score: 66
Period size: 16 Copynumber: 2.6 Consensus size: 16
74110564 TCTATGATTT
74110574 TTTAGGGGTTT-AAGG
1 TTTAGGGGTTTAAAGG
*
74110589 TTTAGGGGTTTAAAGT
1 TTTAGGGGTTTAAAGG
74110605 TTTAGGGGTT
1 TTTAGGGGTT
74110615 AATATTAACC
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
15 11 0.46
16 13 0.54
ACGTcount: A:0.20, C:0.00, G:0.37, T:0.44
Consensus pattern (16 bp):
TTTAGGGGTTTAAAGG
Found at i:74110638 original size:7 final size:7
Alignment explanation
Indices: 74110628--74110665 Score: 67
Period size: 7 Copynumber: 5.4 Consensus size: 7
74110618 ATTAACCCTA
74110628 AACCCAT
1 AACCCAT
74110635 AACCCAT
1 AACCCAT
74110642 AACCCAT
1 AACCCAT
74110649 AACCCAT
1 AACCCAT
*
74110656 AACCCCT
1 AACCCAT
74110663 AAC
1 AAC
74110666 TCCTAAACTT
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
7 30 1.00
ACGTcount: A:0.42, C:0.45, G:0.00, T:0.13
Consensus pattern (7 bp):
AACCCAT
Found at i:74110646 original size:21 final size:21
Alignment explanation
Indices: 74110620--74110673 Score: 74
Period size: 21 Copynumber: 2.5 Consensus size: 21
74110610 GGGTTAATAT
74110620 TAACCCTAAACCCATAACCCA
1 TAACCCTAAACCCATAACCCA
*
74110641 TAACCC-ATAACCCATAACCCC
1 TAACCCTA-AACCCATAACCCA
74110662 TAACTCCTAAAC
1 TAAC-CCTAAAC
74110674 TTTAAACCTC
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
20 1 0.03
21 22 0.76
22 5 0.17
23 1 0.03
ACGTcount: A:0.41, C:0.43, G:0.00, T:0.17
Consensus pattern (21 bp):
TAACCCTAAACCCATAACCCA
Found at i:74110744 original size:22 final size:22
Alignment explanation
Indices: 74110687--74110757 Score: 67
Period size: 22 Copynumber: 3.3 Consensus size: 22
74110677 AAACCTCAAC
*
74110687 CCTTAAACC-ATAATTCATAAA
1 CCTTAAACCTATAACTCATAAA
*
74110708 CCTTAAA-ATAGTAACTCATAAA
1 CCTTAAACCTA-TAACTCATAAA
* *
74110730 CCTTAAACCTTTAAC-CATATA
1 CCTTAAACCTATAACTCATAAA
*
74110751 CCCTAAA
1 CCTTAAA
74110758 TTGTAAATCC
Statistics
Matches: 41, Mismatches: 6, Indels: 6
0.77 0.11 0.11
Matches are distributed among these distances:
21 19 0.46
22 21 0.51
23 1 0.02
ACGTcount: A:0.45, C:0.25, G:0.01, T:0.28
Consensus pattern (22 bp):
CCTTAAACCTATAACTCATAAA
Found at i:74110940 original size:21 final size:22
Alignment explanation
Indices: 74110890--74110940 Score: 68
Period size: 21 Copynumber: 2.4 Consensus size: 22
74110880 AACTCTTAAT
*
74110890 CCTTAATCCTTAAATCATAAAC
1 CCTTAATCCTTAAAACATAAAC
*
74110912 CCTAAATCC-TAAAACATAAAC
1 CCTTAATCCTTAAAACATAAAC
*
74110933 TCTTAATC
1 CCTTAATC
74110941 ATAGACCCTT
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
21 17 0.68
22 8 0.32
ACGTcount: A:0.43, C:0.27, G:0.00, T:0.29
Consensus pattern (22 bp):
CCTTAATCCTTAAAACATAAAC
Found at i:74111289 original size:54 final size:54
Alignment explanation
Indices: 74111187--74111298 Score: 118
Period size: 54 Copynumber: 2.1 Consensus size: 54
74111177 TGTGATGTTT
* **
74111187 TTTAGGGTTTAGGGTTTTATGGATTATAGTTTAATGTTTAAGA-GTTTTTAGGG
1 TTTAGGGTTTAGGGTTTTAGGGATTATACATTAATGTTTAAGATGTTTTTAGGG
* * * ** * *
74111240 TTTACGGGTTTAGTGTTTTAGGGGTTATACATTAGTGTTTATTATTTTTTTGGGG
1 TTTA-GGGTTTAGGGTTTTAGGGATTATACATTAATGTTTAAGATGTTTTTAGGG
74111295 TTTA
1 TTTA
74111299 AAGTTTTAGG
Statistics
Matches: 47, Mismatches: 10, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
53 4 0.09
54 31 0.66
55 12 0.26
ACGTcount: A:0.20, C:0.02, G:0.27, T:0.52
Consensus pattern (54 bp):
TTTAGGGTTTAGGGTTTTAGGGATTATACATTAATGTTTAAGATGTTTTTAGGG
Found at i:74111383 original size:41 final size:41
Alignment explanation
Indices: 74111320--74111578 Score: 317
Period size: 41 Copynumber: 6.4 Consensus size: 41
74111310 GTTATATGAC
* *
74111320 TTTTAGCGGCGTTTTACAGAAAGCGCCGCTAATGCTTTGGT
1 TTTTAGCGGCGTTTTACCGAAAGCGCCGCTAATGCTCTGGT
**
74111361 TTTTAGCGGCGTTTTAGGGAAAGCGCCGCTAATGCTCTGGT
1 TTTTAGCGGCGTTTTACCGAAAGCGCCGCTAATGCTCTGGT
** * * *
74111402 TTTTAAAGGCGTTTTATCGAAAGCGTCGCTAATGCTCTAG-
1 TTTTAGCGGCGTTTTACCGAAAGCGCCGCTAATGCTCTGGT
* * *
74111442 TTTTAGCGGCGTTTTATCTAAAGCGCCGCTAATGCTCTGAT
1 TTTTAGCGGCGTTTTACCGAAAGCGCCGCTAATGCTCTGGT
* * * *
74111483 TTTTAGCGGCGTTTTACCAAAAACGCCGCTATTGCTCT-AT
1 TTTTAGCGGCGTTTTACCGAAAGCGCCGCTAATGCTCTGGT
* * *
74111523 TTTTAGCGGCGTTTTACCAAAAAACGCCGCTATTGCTCT-GT
1 TTTTAGCGGCGTTTTACC-GAAAGCGCCGCTAATGCTCTGGT
74111564 TTTTAGCGGCGTTTT
1 TTTTAGCGGCGTTTT
74111579 TTGATAAAAC
Statistics
Matches: 196, Mismatches: 20, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
40 54 0.28
41 142 0.72
ACGTcount: A:0.20, C:0.21, G:0.24, T:0.36
Consensus pattern (41 bp):
TTTTAGCGGCGTTTTACCGAAAGCGCCGCTAATGCTCTGGT
Found at i:74111457 original size:122 final size:122
Alignment explanation
Indices: 74111320--74111578 Score: 326
Period size: 122 Copynumber: 2.1 Consensus size: 122
74111310 GTTATATGAC
* * *** *
74111320 TTTTAGCGGCGTTTTA-CAGAAAGCGCCGCTAATGCTTTGGTTTTTAGCGGCGTTTTAGGGAAAG
1 TTTTAGCGGCGTTTTATC-GAAAGCGCCGCTAATGCTCTGATTTTTAGCGGCGTTTTACCAAAAA
* * * * *
74111384 CGCCGCTAATGCTCTGGTTTTTAAAGGCGTTTTATC-GAAAGCGTCGCTAATGCTCTAG-
65 CGCCGCTAATGCTCT-ATTTTTAAAGGCGTTTTACCAAAAAACGCCGCTAATGCTCT-GT
*
74111442 TTTTAGCGGCGTTTTATCTAAAGCGCCGCTAATGCTCTGATTTTTAGCGGCGTTTTACCAAAAAC
1 TTTTAGCGGCGTTTTATCGAAAGCGCCGCTAATGCTCTGATTTTTAGCGGCGTTTTACCAAAAAC
* ** *
74111507 GCCGCTATTGCTCTATTTTTAGCGGCGTTTTACCAAAAAACGCCGCTATTGCTCTGT
66 GCCGCTAATGCTCTATTTTTAAAGGCGTTTTACCAAAAAACGCCGCTAATGCTCTGT
74111564 TTTTAGCGGCGTTTT
1 TTTTAGCGGCGTTTT
74111579 TTGATAAAAC
Statistics
Matches: 118, Mismatches: 16, Indels: 6
0.84 0.11 0.04
Matches are distributed among these distances:
121 17 0.14
122 100 0.85
123 1 0.01
ACGTcount: A:0.20, C:0.21, G:0.24, T:0.36
Consensus pattern (122 bp):
TTTTAGCGGCGTTTTATCGAAAGCGCCGCTAATGCTCTGATTTTTAGCGGCGTTTTACCAAAAAC
GCCGCTAATGCTCTATTTTTAAAGGCGTTTTACCAAAAAACGCCGCTAATGCTCTGT
Found at i:74111480 original size:81 final size:80
Alignment explanation
Indices: 74111320--74111578 Score: 313
Period size: 81 Copynumber: 3.2 Consensus size: 80
74111310 GTTATATGAC
* * ***
74111320 TTTTAGCGGCGTTTTACAGAAAGCGCCGCTAATGCTTTGGTTTTTAGCGGCGTTTTAGGGAAAGC
1 TTTTAGCGGCGTTTTAC-GAAAGCGCCGCTAATGCTCTAG-TTTTAGCGGCGTTTTACCAAAAGC
74111385 GCCGCTAATGCTCTGGT
64 GCCGCTAATGCTCTGGT
** * * *
74111402 TTTTAAAGGCGTTTTATCGAAAGCGTCGCTAATGCTCTAGTTTTAGCGGCGTTTTATCTAAAGCG
1 TTTTAGCGGCGTTTTA-CGAAAGCGCCGCTAATGCTCTAGTTTTAGCGGCGTTTTACCAAAAGCG
*
74111467 CCGCTAATGCTCTGAT
65 CCGCTAATGCTCTGGT
* * * * *
74111483 TTTTAGCGGCGTTTTACCAAAAACGCCGCTATTGCTCTATTTTTAGCGGCGTTTTACCAAAAAAC
1 TTTTAGCGGCGTTTTA-CGAAAGCGCCGCTAATGCTCTAGTTTTAGCGGCGTTTTACC-AAAAGC
*
74111548 GCCGCTATTGCTCT-GT
64 GCCGCTAATGCTCTGGT
74111564 TTTTAGCGGCGTTTT
1 TTTTAGCGGCGTTTT
74111579 TTGATAAAAC
Statistics
Matches: 153, Mismatches: 22, Indels: 5
0.85 0.12 0.03
Matches are distributed among these distances:
81 102 0.67
82 50 0.33
83 1 0.01
ACGTcount: A:0.20, C:0.21, G:0.24, T:0.36
Consensus pattern (80 bp):
TTTTAGCGGCGTTTTACGAAAGCGCCGCTAATGCTCTAGTTTTAGCGGCGTTTTACCAAAAGCGC
CGCTAATGCTCTGGT
Found at i:74119637 original size:46 final size:46
Alignment explanation
Indices: 74119313--74119627 Score: 531
Period size: 46 Copynumber: 6.8 Consensus size: 46
74119303 TATATATACA
** * * *
74119313 CATCTCATACATATCTCACATTAGCCATTCGGCTTTACCTCATATCCGTC
1 CATCTCATACACGTTTCGCATTAGCCATTCTGCTTTACCTCATA----TC
*
74119363 CATCGCATACACGTTTCGCATTAGCCATTCTGCTTTACCTCATATC
1 CATCTCATACACGTTTCGCATTAGCCATTCTGCTTTACCTCATATC
74119409 CATCTCATACACGTTTCGCATTAGCCATTCTGCTTTACCTCATATC
1 CATCTCATACACGTTTCGCATTAGCCATTCTGCTTTACCTCATATC
74119455 CATCTCATACACGTTTCGCATTAGCCATTCTGCTTTACCTCATATC
1 CATCTCATACACGTTTCGCATTAGCCATTCTGCTTTACCTCATATC
74119501 CATCTCATACACGTTTCGCATTAGCCATTCTGCTTTACCTCATATC
1 CATCTCATACACGTTTCGCATTAGCCATTCTGCTTTACCTCATATC
74119547 CATCTCATACACGTTTCGCATTAGCCATTCTGCTTTACCTCATATC
1 CATCTCATACACGTTTCGCATTAGCCATTCTGCTTTACCTCATATC
*
74119593 CATCTCATACACGTTTCGCATTAGCCATTCGGCTT
1 CATCTCATACACGTTTCGCATTAGCCATTCTGCTT
74119628 CGCCACATAT
Statistics
Matches: 257, Mismatches: 8, Indels: 4
0.96 0.03 0.01
Matches are distributed among these distances:
46 219 0.85
50 38 0.15
ACGTcount: A:0.22, C:0.33, G:0.10, T:0.36
Consensus pattern (46 bp):
CATCTCATACACGTTTCGCATTAGCCATTCTGCTTTACCTCATATC
Found at i:74119686 original size:47 final size:44
Alignment explanation
Indices: 74119631--74119797 Score: 190
Period size: 47 Copynumber: 3.5 Consensus size: 44
74119621 TCGGCTTCGC
* *
74119631 CACATATATACACTTCCACGTTCATCACATTGGCCATTCTACCTTAT
1 CACATATATGCA-TT-CACATTCATCACATTGGCCATTC-ACCTTAT
*
74119678 CATATATATGCATGTTCACATTCATCACATTGGCCATTCAGCCTTAT
1 CACATATATGCA--TTCACATTCATCACATTGGCCATTCA-CCTTAT
* *
74119725 CACACATATGCAAGTTCACATTCATCACATTGGCCATTCGGCCTTAT
1 CACATATATGC-A-TTCACATTCATCACATTGGCCATTC-ACCTTAT
74119772 CACATATATGCATGTTCACATTCATC
1 CACATATATGCA--TTCACATTCATC
74119798 TCATAAAATC
Statistics
Matches: 107, Mismatches: 8, Indels: 10
0.86 0.06 0.08
Matches are distributed among these distances:
46 2 0.02
47 102 0.95
48 3 0.03
ACGTcount: A:0.28, C:0.29, G:0.10, T:0.34
Consensus pattern (44 bp):
CACATATATGCATTCACATTCATCACATTGGCCATTCACCTTAT
Found at i:74124084 original size:27 final size:27
Alignment explanation
Indices: 74124054--74124445 Score: 338
Period size: 27 Copynumber: 14.6 Consensus size: 27
74124044 TAATAAAGAG
* *
74124054 AAATTACTAAAATACCCTTGATTTGTA
1 AAATTACTGAAATACCCTCGATTTGTA
*
74124081 AAATTACTGAAATACCCCCGATTTGTA
1 AAATTACTGAAATACCCTCGATTTGTA
* * *
74124108 AAATTACCGAAATACCCTTGA-TTGTG
1 AAATTACTGAAATACCCTCGATTTGTA
*
74124134 AAATTACTAAAATACCCTCGATTTGTA
1 AAATTACTGAAATACCCTCGATTTGTA
* * * * *
74124161 AAATCA-TCAAAATACCCCCAATTTGTG
1 AAATTACT-GAAATACCCTCGATTTGTA
* *
74124188 AAATTA-TCGAAACACCCTCGATTAGTA
1 AAATTACT-GAAATACCCTCGATTTGTA
* *
74124215 AAATTACCGAAACACCCTCGATTTGTA
1 AAATTACTGAAATACCCTCGATTTGTA
* *
74124242 AAATTA-TCGAAACACCCTTGATTTGTA
1 AAATTACT-GAAATACCCTCGATTTGTA
* * * *
74124269 AAACTA-TCGAAATACACTC-AATTGTG
1 AAATTACT-GAAATACCCTCGATTTGTA
*
74124295 AAGTTACTGAAATACCCTCGATTTGTA
1 AAATTACTGAAATACCCTCGATTTGTA
* * * *
74124322 AAA-TAATCAAAATGCCAC-CGATTTGTG
1 AAATTACT-GAAATACC-CTCGATTTGTA
* *
74124349 AAATTACTGAAACACCCTCGATTTTTA
1 AAATTACTGAAATACCCTCGATTTGTA
**
74124376 AAATTACCAAAATACCC-CTGATTTGTA
1 AAATTACTGAAATACCCTC-GATTTGTA
*
74124403 AAATTA-TAGAAATACCCTCGA-TTGTG
1 AAATTACT-GAAATACCCTCGATTTGTA
*
74124429 AAATTACTGACATACCC
1 AAATTACTGAAATACCC
74124446 CTATAGGGTA
Statistics
Matches: 295, Mismatches: 56, Indels: 29
0.78 0.15 0.08
Matches are distributed among these distances:
26 65 0.22
27 225 0.76
28 5 0.02
ACGTcount: A:0.39, C:0.21, G:0.11, T:0.30
Consensus pattern (27 bp):
AAATTACTGAAATACCCTCGATTTGTA
Found at i:74124308 original size:134 final size:134
Alignment explanation
Indices: 74124062--74124446 Score: 427
Period size: 134 Copynumber: 2.9 Consensus size: 134
74124052 AGAAATTACT
* * * *
74124062 AAAATACCCTTGATTTGTAAAATTACTGAAATACCCCCGATTTGTAAAATTACCGAAATACCCTT
1 AAAACACCCTCGATTTGTAAAATTACTGAAACACCCTCGATTTGTAAAATTACCGAAATACCCTT
* * * * * * *
74124127 GA-TTGTGAAATTA-CTAAAATACCCTCGATTTGTAAAATCA-TCAAAATACCCCCAATTTGTGA
66 GATTTGTAAAATTATC-GAAATACCCTC-AATTGTGAAATTACT-GAAATACCCCCAATTTGTAA
*
74124189 AATTATC
128 AATAATC
* * * * *
74124196 GAAACACCCTCGATTAGTAAAATTACCGAAACACCCTCGATTTGTAAAATTATCGAAACACCCTT
1 AAAACACCCTCGATTTGTAAAATTACTGAAACACCCTCGATTTGTAAAATTACCGAAATACCCTT
* * * * *
74124261 GATTTGTAAAACTATCGAAATACACTCAATTGTGAAGTTACTGAAATACCCTCGATTTGTAAAAT
66 GATTTGTAAAATTATCGAAATACCCTCAATTGTGAAATTACTGAAATACCCCCAATTTGTAAAAT
74124326 AATC
131 AATC
** * * * *
74124330 AAAATGCCAC-CGATTTGTGAAATTACTGAAACACCCTCGATTTTTAAAATTACCAAAATACCCC
1 AAAACACC-CTCGATTTGTAAAATTACTGAAACACCCTCGATTTGTAAAATTACCGAAATACCCT
* * *
74124394 TGATTTGTAAAATTATAGAAATACCCTCGATTGTGAAATTACTGACATACCCC
65 TGATTTGTAAAATTATCGAAATACCCTCAATTGTGAAATTACTGAAATACCCC
74124447 TATAGGGTAA
Statistics
Matches: 207, Mismatches: 40, Indels: 8
0.81 0.16 0.03
Matches are distributed among these distances:
134 186 0.90
135 20 0.10
136 1 0.00
ACGTcount: A:0.38, C:0.21, G:0.11, T:0.30
Consensus pattern (134 bp):
AAAACACCCTCGATTTGTAAAATTACTGAAACACCCTCGATTTGTAAAATTACCGAAATACCCTT
GATTTGTAAAATTATCGAAATACCCTCAATTGTGAAATTACTGAAATACCCCCAATTTGTAAAAT
AATC
Found at i:74124319 original size:161 final size:161
Alignment explanation
Indices: 74124054--74124425 Score: 498
Period size: 161 Copynumber: 2.3 Consensus size: 161
74124044 TAATAAAGAG
* * * * *
74124054 AAATTACTAAAATACCCTTGATTTGTAAAATTA-CTGAAATACCCCCGATTTGTAAAATTACCGA
1 AAATTACCAAAACACCCTCGATTTGTAAAATTATC-GAAATACCCTCGATTTGTAAAACTACCGA
* ** * *
74124118 AATACCCTTGATTGTGAAATTACTAAAATACCCTCGATTTGTAAAATCATCAAAATACCCCCAAT
65 AATACACTCAATTGTGAAATTACTAAAATACCCTCGATTTGTAAAATAATCAAAATACCACCAAT
74124183 TTGTGAAATTA-TCGAAACACCCTCGATTAGTA
130 TTGTGAAATTACT-GAAACACCCTCGATTAGTA
* * * *
74124215 AAATTACCGAAACACCCTCGATTTGTAAAATTATCGAAACACCCTTGATTTGTAAAACTATCGAA
1 AAATTACCAAAACACCCTCGATTTGTAAAATTATCGAAATACCCTCGATTTGTAAAACTACCGAA
* * * *
74124280 ATACACTCAATTGTGAAGTTACTGAAATACCCTCGATTTGTAAAATAATCAAAATGCCACCGATT
66 ATACACTCAATTGTGAAATTACTAAAATACCCTCGATTTGTAAAATAATCAAAATACCACCAATT
**
74124345 TGTGAAATTACTGAAACACCCTCGATTTTTA
131 TGTGAAATTACTGAAACACCCTCGATTAGTA
* *
74124376 AAATTACCAAAATACCC-CTGATTTGTAAAATTATAGAAATACCCTCGATT
1 AAATTACCAAAACACCCTC-GATTTGTAAAATTATCGAAATACCCTCGATT
74124426 GTGAAATTAC
Statistics
Matches: 183, Mismatches: 25, Indels: 6
0.86 0.12 0.03
Matches are distributed among these distances:
160 1 0.01
161 180 0.98
162 2 0.01
ACGTcount: A:0.39, C:0.20, G:0.10, T:0.30
Consensus pattern (161 bp):
AAATTACCAAAACACCCTCGATTTGTAAAATTATCGAAATACCCTCGATTTGTAAAACTACCGAA
ATACACTCAATTGTGAAATTACTAAAATACCCTCGATTTGTAAAATAATCAAAATACCACCAATT
TGTGAAATTACTGAAACACCCTCGATTAGTA
Found at i:74140960 original size:27 final size:26
Alignment explanation
Indices: 74140921--74141117 Score: 187
Period size: 27 Copynumber: 7.3 Consensus size: 26
74140911 NNNNNNNNNC
*
74140921 GGTAATTTCACAAACCAGTGGTATTTT
1 GGTAATTTTACAAACCAG-GGTATTTT
*
74140948 GGTAATTTTACAAACTAGGGGTATTTT
1 GGTAATTTTACAAACCA-GGGTATTTT
**
74140975 GGTAATTTTACAAATTAAGGGTATTTT
1 GGTAATTTTACAAA-CCAGGGTATTTT
74141002 GGTAATTTTACAAACCAAGGGTATTTT
1 GGTAATTTTACAAACC-AGGGTATTTT
* * * *
74141029 AGCAATTTTACACACTAGGGTATTTT
1 GGTAATTTTACAAACCAGGGTATTTT
* * * *
74141055 GGTAATTTTACTGATCGATGGTATTTT
1 GGTAATTTTAC-AAACCAGGGTATTTT
* ** *
74141082 GGTACTTTTGTAAACCGATGGTATTTT
1 GGTAATTTTACAAACC-AGGGTATTTT
*
74141109 AGTAATTTT
1 GGTAATTTT
74141118 GTAAATCGAG
Statistics
Matches: 140, Mismatches: 25, Indels: 10
0.80 0.14 0.06
Matches are distributed among these distances:
26 21 0.15
27 117 0.84
28 2 0.01
ACGTcount: A:0.29, C:0.10, G:0.19, T:0.42
Consensus pattern (26 bp):
GGTAATTTTACAAACCAGGGTATTTT
Found at i:74141097 original size:80 final size:80
Alignment explanation
Indices: 74140921--74141117 Score: 243
Period size: 80 Copynumber: 2.4 Consensus size: 80
74140911 NNNNNNNNNC
* *
74140921 GGTAATTTCACAAACCAGTGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTAC
1 GGTAATTTTACAAACCAG-GGTATTTTAGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTAC
*
74140986 AAATTAAGGGTATTTT
65 AAATCAAGGGTATTTT
* *
74141002 GGTAATTTTACAAACCAAGGGTATTTTAGCAATTTTACACACTA-GGGTATTTTGGTAATTTTAC
1 GGTAATTTTACAAACC-AGGGTATTTTAGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTAC
** * *
74141066 TGATCGATGGTATTTT
65 AAATCAAGGGTATTTT
* ** *
74141082 GGTACTTTTGTAAACCGATGGTATTTTAGTAATTTT
1 GGTAATTTTACAAACC-AGGGTATTTTAGTAATTTT
74141118 GTAAATCGAG
Statistics
Matches: 100, Mismatches: 15, Indels: 3
0.85 0.13 0.03
Matches are distributed among these distances:
80 61 0.61
81 37 0.37
82 2 0.02
ACGTcount: A:0.29, C:0.10, G:0.19, T:0.42
Consensus pattern (80 bp):
GGTAATTTTACAAACCAGGGTATTTTAGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTACA
AATCAAGGGTATTTT
Found at i:74141118 original size:27 final size:27
Alignment explanation
Indices: 74141070--74141131 Score: 88
Period size: 27 Copynumber: 2.3 Consensus size: 27
74141060 TTTTACTGAT
* *
74141070 CGATGGTATTTTGGTACTTTTGTAAAC
1 CGATGGTATTTTAGTAATTTTGTAAAC
*
74141097 CGATGGTATTTTAGTAATTTTGTAAAT
1 CGATGGTATTTTAGTAATTTTGTAAAC
*
74141124 CGAGGGTA
1 CGATGGTA
74141132 AAACAGTAAT
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 31 1.00
ACGTcount: A:0.26, C:0.08, G:0.24, T:0.42
Consensus pattern (27 bp):
CGATGGTATTTTAGTAATTTTGTAAAC
Found at i:74141139 original size:27 final size:27
Alignment explanation
Indices: 74141109--74141212 Score: 145
Period size: 27 Copynumber: 3.9 Consensus size: 27
74141099 ATGGTATTTT
* *
74141109 AGTAATTTTGTAAATCGAGGGTAAAAC
1 AGTAATTCTATAAATCGAGGGTAAAAC
* * *
74141136 AGTAATTCTGTGAATCAAGGGTAAAAC
1 AGTAATTCTATAAATCGAGGGTAAAAC
*
74141163 AGTAATTCCATAAATCGAGGGTAAAAC
1 AGTAATTCTATAAATCGAGGGTAAAAC
*
74141190 GGTAATTCTATAAATCGAGGGTA
1 AGTAATTCTATAAATCGAGGGTA
74141213 CTTTGGTAAT
Statistics
Matches: 68, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 68 1.00
ACGTcount: A:0.40, C:0.11, G:0.22, T:0.27
Consensus pattern (27 bp):
AGTAATTCTATAAATCGAGGGTAAAAC
Found at i:74142829 original size:51 final size:51
Alignment explanation
Indices: 74142768--74142870 Score: 170
Period size: 51 Copynumber: 2.0 Consensus size: 51
74142758 ACACTAAATG
* *
74142768 TAACGCCCCAAACCCGGCCCAGACATTATGGCTGAATCTGATGTGCCACAT
1 TAACACCCCAAACCCGGCCCAGACATTATGGCCGAATCTGATGTGCCACAT
**
74142819 TAACACCCCAAACCCGGCCCAGATGTTATGGCCGAATCTGATGTGCCACAT
1 TAACACCCCAAACCCGGCCCAGACATTATGGCCGAATCTGATGTGCCACAT
74142870 T
1 T
74142871 GAAGTTAAAA
Statistics
Matches: 48, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
51 48 1.00
ACGTcount: A:0.27, C:0.33, G:0.19, T:0.20
Consensus pattern (51 bp):
TAACACCCCAAACCCGGCCCAGACATTATGGCCGAATCTGATGTGCCACAT
Found at i:74143546 original size:31 final size:31
Alignment explanation
Indices: 74143503--74143772 Score: 515
Period size: 31 Copynumber: 8.7 Consensus size: 31
74143493 TTAGTCTCAA
74143503 CATAT-ACTGGGCCGAAGCCTTTTCATAAAT
1 CATATCACTGGGCCGAAGCCTTTTCATAAAT
* *
74143533 CATATCACTGGGCCGAAGTCTTTTCAAAAAT
1 CATATCACTGGGCCGAAGCCTTTTCATAAAT
74143564 CATATCACTGGGCCGAAGCCTTTTCATAAAT
1 CATATCACTGGGCCGAAGCCTTTTCATAAAT
74143595 CATATCACTGGGCCGAAGCCTTTTCATAAAT
1 CATATCACTGGGCCGAAGCCTTTTCATAAAT
74143626 CATATCACTGGGCCGAAGCCTTTTCATAAAT
1 CATATCACTGGGCCGAAGCCTTTTCATAAAT
74143657 CATATCACTGGGCCGAAGCCTTTTCATAAAT
1 CATATCACTGGGCCGAAGCCTTTTCATAAAT
74143688 CATATCACTGGGCCGAAGCCTTTTCATAAAT
1 CATATCACTGGGCCGAAGCCTTTTCATAAAT
74143719 CATATCACTGGGCCGAAGCCTTTTCATAAAT
1 CATATCACTGGGCCGAAGCCTTTTCATAAAT
74143750 CATATCACTGGGCCGAAGCCTTT
1 CATATCACTGGGCCGAAGCCTTT
74143773 NNNNNNNNNN
Statistics
Matches: 235, Mismatches: 4, Indels: 1
0.98 0.02 0.00
Matches are distributed among these distances:
30 5 0.02
31 230 0.98
ACGTcount: A:0.29, C:0.26, G:0.17, T:0.29
Consensus pattern (31 bp):
CATATCACTGGGCCGAAGCCTTTTCATAAAT
Found at i:74151629 original size:30 final size:30
Alignment explanation
Indices: 74151595--74151654 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
74151585 CTTTAATACG
74151595 AACTTTGGAAAAATTAC-CATTTTGCCCCTA
1 AACTTTGGAAAAATTACAC-TTTTGCCCCTA
* * *
74151625 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
74151655 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
30 25 0.96
31 1 0.04
ACGTcount: A:0.30, C:0.25, G:0.08, T:0.37
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Found at i:74153154 original size:18 final size:17
Alignment explanation
Indices: 74153131--74153181 Score: 68
Period size: 18 Copynumber: 2.9 Consensus size: 17
74153121 TAAATAAATA
74153131 AATTTT-ATCTTTATGTTT
1 AATTTTAAT-TTTAT-TTT
74153149 AATTTTAATTTTAATTTT
1 AATTTTAATTTT-ATTTT
74153167 AATTTTAATTTTATT
1 AATTTTAATTTTATT
74153182 CTATCTTTTT
Statistics
Matches: 31, Mismatches: 0, Indels: 5
0.86 0.00 0.14
Matches are distributed among these distances:
17 3 0.10
18 24 0.77
19 4 0.13
ACGTcount: A:0.29, C:0.02, G:0.02, T:0.67
Consensus pattern (17 bp):
AATTTTAATTTTATTTT
Found at i:74153155 original size:6 final size:6
Alignment explanation
Indices: 74153146--74153179 Score: 68
Period size: 6 Copynumber: 5.7 Consensus size: 6
74153136 TATCTTTATG
74153146 TTTAAT TTTAAT TTTAAT TTTAAT TTTAAT TTTA
1 TTTAAT TTTAAT TTTAAT TTTAAT TTTAAT TTTA
74153180 TTCTATCTTT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 28 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (6 bp):
TTTAAT
Found at i:74153252 original size:18 final size:18
Alignment explanation
Indices: 74153229--74153266 Score: 60
Period size: 18 Copynumber: 2.1 Consensus size: 18
74153219 TTTTATAAAT
74153229 AAATAAATAG-GTAAATAG
1 AAAT-AATAGTGTAAATAG
74153247 AAATAATAGTGTAAATAG
1 AAATAATAGTGTAAATAG
74153265 AA
1 AA
74153267 TTCTTAATTA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
17 5 0.26
18 14 0.74
ACGTcount: A:0.61, C:0.00, G:0.16, T:0.24
Consensus pattern (18 bp):
AAATAATAGTGTAAATAG
Found at i:74154551 original size:49 final size:49
Alignment explanation
Indices: 74154479--74154578 Score: 191
Period size: 49 Copynumber: 2.0 Consensus size: 49
74154469 ATTATTTACC
74154479 TACAAGATATTCTCAACCTTTAACCTACACAAAACTACTCAATTCATGG
1 TACAAGATATTCTCAACCTTTAACCTACACAAAACTACTCAATTCATGG
*
74154528 TACAAGATATTCTTAACCTTTAACCTACACAAAACTACTCAATTCATGG
1 TACAAGATATTCTCAACCTTTAACCTACACAAAACTACTCAATTCATGG
74154577 TA
1 TA
74154579 TCGAAATTTT
Statistics
Matches: 50, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
49 50 1.00
ACGTcount: A:0.39, C:0.25, G:0.06, T:0.30
Consensus pattern (49 bp):
TACAAGATATTCTCAACCTTTAACCTACACAAAACTACTCAATTCATGG
Found at i:74167941 original size:69 final size:69
Alignment explanation
Indices: 74167859--74168135 Score: 545
Period size: 69 Copynumber: 4.0 Consensus size: 69
74167849 AAACTGAGCA
*
74167859 CATACAAATTTTCTCAAAAACTTAACAAAATTTTTAAAGTTTCAAAGGTCACACGCCAATGTGAA
1 CATACAAATTTTCTCAAAAAGTTAACAAAATTTTTAAAGTTTCAAAGGTCACACGCCAATGTGAA
74167924 CAGG
66 CAGG
74167928 CATACAAATTTTCTCAAAAAGTTAACAAAATTTTTAAAGTTTCAAAGGTCACACGCCAATGTGAA
1 CATACAAATTTTCTCAAAAAGTTAACAAAATTTTTAAAGTTTCAAAGGTCACACGCCAATGTGAA
74167993 CAGG
66 CAGG
74167997 CATACAAATTTTCTCAAAAAGTTAACAAAATTTTTAAAGTTTCAAAGGTCACACGCCAATGTGAA
1 CATACAAATTTTCTCAAAAAGTTAACAAAATTTTTAAAGTTTCAAAGGTCACACGCCAATGTGAA
74168062 CAGG
66 CAGG
74168066 CATACAAATTTTCTCAAAAAGTTAACAAAATTTTTAAAGTTTCAAAGGTCACACGCCAATGTGAA
1 CATACAAATTTTCTCAAAAAGTTAACAAAATTTTTAAAGTTTCAAAGGTCACACGCCAATGTGAA
74168131 CAGG
66 CAGG
74168135 C
1 C
74168136 CATATGCCTC
Statistics
Matches: 207, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
69 207 1.00
ACGTcount: A:0.42, C:0.18, G:0.13, T:0.27
Consensus pattern (69 bp):
CATACAAATTTTCTCAAAAAGTTAACAAAATTTTTAAAGTTTCAAAGGTCACACGCCAATGTGAA
CAGG
Found at i:74172503 original size:47 final size:47
Alignment explanation
Indices: 74172446--74173454 Score: 1496
Period size: 47 Copynumber: 21.4 Consensus size: 47
74172436 ATTGATGTAC
* * * *
74172446 AAGTATATATATGTGATAGGGCCGAGTGGCCAATGTGATGAATTTGA
1 AAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
* * * *
74172493 AAGTATATATATATGTGATAGGGCCGAGTGGCCAACGTGATGAATGTGA
1 AAG--TGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
* * * * * *
74172542 AAGTGTATATATGTGATAGGGTCGAGTGACCAACGTGATGAATCTGA
1 AAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
74172589 AAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
1 AAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
* * *
74172636 AAGTGTATATATGAGATAAGACCTAATGGCCAATGTGATGAATGTGA
1 AAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
*
74172683 AAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATCTGA
1 AAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
74172730 AAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
1 AAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
* * * * * *
74172777 AAGTGTATATATGTGATAGGGTCGAGTGACCAACGTGATGAATCTGA
1 AAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
74172824 AAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
1 AAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
* * * * * *
74172871 AAGTGTATATATGTGATAGGGTCGAGTGACCAACGTGATGAATCTGA
1 AAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
74172918 AAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
1 AAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
* * * * * *
74172965 AAGTGTATATATGTGATAGGGTCGAGTGACCAACGTGATGAATCTGA
1 AAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
74173012 AAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
1 AAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
* * * * * *
74173059 AAGTGTATATATGTGATAGGGTCGAGTGACCAACGTGATGAATCTGA
1 AAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
74173106 AAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
1 AAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
* * * * * *
74173153 AAGTGTATATATGTGATAGGGTCGAGTGACCAACGTGATGAATCTGA
1 AAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
74173200 AAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
1 AAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
* * * * * *
74173247 AAGTGTATATATGTGATAGGGTCGAGTGACCAACGTGATGAATCTGA
1 AAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
74173294 AAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
1 AAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
74173341 AAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
1 AAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
*
74173388 AAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGGATGTGA
1 AAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
*
74173435 AAGTGTATAAATGTGATAAG
1 AAGTGTATATATGTGATAAG
74173455 TCCCGAAGGG
Statistics
Matches: 866, Mismatches: 94, Indels: 4
0.90 0.10 0.00
Matches are distributed among these distances:
47 821 0.95
49 45 0.05
ACGTcount: A:0.33, C:0.09, G:0.30, T:0.28
Consensus pattern (47 bp):
AAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
Found at i:74172721 original size:22 final size:22
Alignment explanation
Indices: 74172693--74172768 Score: 64
Period size: 22 Copynumber: 3.3 Consensus size: 22
74172683 AAGTGTATAT
74172693 ATGTGATAAGGCCGAATGGCCA
1 ATGTGATAAGGCCGAATGGCCA
* * ***
74172715 ATGTGATGAA-TCTGAAAGTGTATA
1 ATGTGAT-AAGGCCG-AA-TGGCCA
74172739 TATGTGATAAGGCCGAATGGCCA
1 -ATGTGATAAGGCCGAATGGCCA
74172762 ATGTGAT
1 ATGTGAT
74172769 GAATGTGAAA
Statistics
Matches: 39, Mismatches: 10, Indels: 10
0.66 0.17 0.17
Matches are distributed among these distances:
22 16 0.41
23 7 0.18
24 7 0.18
25 9 0.23
ACGTcount: A:0.33, C:0.12, G:0.29, T:0.26
Consensus pattern (22 bp):
ATGTGATAAGGCCGAATGGCCA
Found at i:74173330 original size:22 final size:22
Alignment explanation
Indices: 74173304--74173426 Score: 70
Period size: 22 Copynumber: 5.3 Consensus size: 22
74173294 AAGTGTATAT
74173304 ATGTGATAAGGCCGAATGGCCA
1 ATGTGATAAGGCCGAATGGCCA
* * ***
74173326 ATGTGATGAATG-TGAAAGTGTATA
1 ATGTGAT-AAGGCCG-AA-TGGCCA
74173350 TATGTGATAAGGCCGAATGGCCA
1 -ATGTGATAAGGCCGAATGGCCA
* * ***
74173373 ATGTGATGAATG-TGAAAGTGTATA
1 ATGTGAT-AAGGCCG-AA-TGGCCA
74173397 TATGTGATAAGGCCGAATGGCCA
1 -ATGTGATAAGGCCGAATGGCCA
74173420 ATGTGAT
1 ATGTGAT
74173427 GGATGTGAAA
Statistics
Matches: 71, Mismatches: 20, Indels: 20
0.64 0.18 0.18
Matches are distributed among these distances:
22 23 0.32
23 16 0.23
24 16 0.23
25 16 0.23
ACGTcount: A:0.33, C:0.10, G:0.30, T:0.27
Consensus pattern (22 bp):
ATGTGATAAGGCCGAATGGCCA
Found at i:74173454 original size:94 final size:94
Alignment explanation
Indices: 74172446--74173452 Score: 1672
Period size: 94 Copynumber: 10.7 Consensus size: 94
74172436 ATTGATGTAC
* * * * *
74172446 AAGTATATATATGTGATAGGGCCGAGTGGCCAATGTGATGAATTTGAAAGTATATATATATGTGA
1 AAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAG--TGTATATATGTGA
* * *
74172511 TAGGGCCGAGTGGCCAACGTGATGAATGTGA
64 TAGGGTCGAGTGACCAACGTGATGAATCTGA
* * * * * *
74172542 AAGTGTATATATGTGATAGGGTCGAGTGACCAACGTGATGAATCTGAAAGTGTATATATGTGATA
1 AAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATA
* * * * * *
74172607 AGGCCGAATGGCCAATGTGATGAATGTGA
66 GGGTCGAGTGACCAACGTGATGAATCTGA
* * *
74172636 AAGTGTATATATGAGATAAGACCTAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATA
1 AAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATA
* * * * *
74172701 AGGCCGAATGGCCAATGTGATGAATCTGA
66 GGGTCGAGTGACCAACGTGATGAATCTGA
74172730 AAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATA
1 AAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATA
74172795 GGGTCGAGTGACCAACGTGATGAATCTGA
66 GGGTCGAGTGACCAACGTGATGAATCTGA
74172824 AAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATA
1 AAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATA
74172889 GGGTCGAGTGACCAACGTGATGAATCTGA
66 GGGTCGAGTGACCAACGTGATGAATCTGA
74172918 AAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATA
1 AAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATA
74172983 GGGTCGAGTGACCAACGTGATGAATCTGA
66 GGGTCGAGTGACCAACGTGATGAATCTGA
74173012 AAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATA
1 AAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATA
74173077 GGGTCGAGTGACCAACGTGATGAATCTGA
66 GGGTCGAGTGACCAACGTGATGAATCTGA
74173106 AAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATA
1 AAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATA
74173171 GGGTCGAGTGACCAACGTGATGAATCTGA
66 GGGTCGAGTGACCAACGTGATGAATCTGA
74173200 AAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATA
1 AAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATA
74173265 GGGTCGAGTGACCAACGTGATGAATCTGA
66 GGGTCGAGTGACCAACGTGATGAATCTGA
74173294 AAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATA
1 AAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATA
* * * * * *
74173359 AGGCCGAATGGCCAATGTGATGAATGTGA
66 GGGTCGAGTGACCAACGTGATGAATCTGA
* *
74173388 AAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGGATGTGAAAGTGTATAAATGTGATA
1 AAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATA
74173453 AGTCCCGAAG
Statistics
Matches: 876, Mismatches: 35, Indels: 2
0.96 0.04 0.00
Matches are distributed among these distances:
94 831 0.95
96 45 0.05
ACGTcount: A:0.33, C:0.09, G:0.29, T:0.28
Consensus pattern (94 bp):
AAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATA
GGGTCGAGTGACCAACGTGATGAATCTGA
Found at i:74182939 original size:13 final size:13
Alignment explanation
Indices: 74182921--74182945 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
74182911 CCGGGCACAT
74182921 GCCCGTGTCCTTG
1 GCCCGTGTCCTTG
74182934 GCCCGTGTCCTT
1 GCCCGTGTCCTT
74182946 TACACGGCCG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.00, C:0.40, G:0.28, T:0.32
Consensus pattern (13 bp):
GCCCGTGTCCTTG
Found at i:74185746 original size:23 final size:22
Alignment explanation
Indices: 74185720--74185794 Score: 71
Period size: 23 Copynumber: 3.3 Consensus size: 22
74185710 TAGCTCATTG
74185720 GAGCTTACCGATTCAGCTCGAAA
1 GAGCTTACCG-TTCAGCTCGAAA
* * * *
74185743 GAGCTTACTGTTCAACTTGATA
1 GAGCTTACCGTTCAGCTCGAAA
*
74185765 GAGCTTACCGTTTTAGCTC-AATA
1 GAGCTTACCG-TTCAGCTCGAA-A
74185788 GAGCTTA
1 GAGCTTA
74185795 TTGTTTATCA
Statistics
Matches: 41, Mismatches: 9, Indels: 4
0.76 0.17 0.07
Matches are distributed among these distances:
22 19 0.46
23 22 0.54
ACGTcount: A:0.28, C:0.21, G:0.20, T:0.31
Consensus pattern (22 bp):
GAGCTTACCGTTCAGCTCGAAA
Found at i:74185992 original size:20 final size:20
Alignment explanation
Indices: 74185967--74186024 Score: 80
Period size: 20 Copynumber: 2.9 Consensus size: 20
74185957 ATAAGCTATG
*
74185967 TTGAAATGGATGAGTTACTA
1 TTGAAATGGATGAATTACTA
*
74185987 TTGAAATGAATGAATTACTA
1 TTGAAATGGATGAATTACTA
* *
74186007 TTGATACGGATGAATTAC
1 TTGAAATGGATGAATTAC
74186025 AATTTATACG
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 33 1.00
ACGTcount: A:0.38, C:0.07, G:0.21, T:0.34
Consensus pattern (20 bp):
TTGAAATGGATGAATTACTA
Found at i:74186033 original size:20 final size:20
Alignment explanation
Indices: 74185996--74186034 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
74185986 ATTGAAATGA
*
74185996 ATGAATTACTATTGATACGG
1 ATGAATTACAATTGATACGG
*
74186016 ATGAATTACAATTTATACG
1 ATGAATTACAATTGATACG
74186035 AATAGAAATG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.38, C:0.10, G:0.15, T:0.36
Consensus pattern (20 bp):
ATGAATTACAATTGATACGG
Found at i:74188307 original size:13 final size:13
Alignment explanation
Indices: 74188289--74188313 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
74188279 TAATGGTATA
74188289 TTGAATCCATGAT
1 TTGAATCCATGAT
74188302 TTGAATCCATGA
1 TTGAATCCATGA
74188314 AAATTTAGTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TTGAATCCATGAT
Found at i:74190142 original size:37 final size:37
Alignment explanation
Indices: 74190086--74190164 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
74190076 CCGAGCTCTA
* * *
74190086 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
74190123 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
74190160 AAGAC
1 AAGAC
74190165 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Done.