Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr9
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 91122320
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2661692 characters in sequence are not A, C, G, or T
File 227 of 279
Found at i:74195194 original size:55 final size:54
Alignment explanation
Indices: 74195072--74195197 Score: 144
Period size: 55 Copynumber: 2.3 Consensus size: 54
74195062 TGCGACATGG
* * * *
74195072 CCATGGGCGAACCTGCCAAAACAACACGAGCGTTCGACACGCTCGTGTCTAGAAC
1 CCAT-GGCGAACCTGTCAAAACAACACGAGCGTTCGACACGCCCGTGCCAAGAAC
* * * * *
74195127 TCGTGGCTGAACCTGTCAAATCAACACGGGCGTTCGACACGCCCGTGCCAAGCAC
1 CCATGGC-GAACCTGTCAAAACAACACGAGCGTTCGACACGCCCGTGCCAAGAAC
74195182 CCATGGTCGAACCTGT
1 CCATGG-CGAACCTGT
74195198 TAAACTAATA
Statistics
Matches: 58, Mismatches: 11, Indels: 4
0.79 0.15 0.05
Matches are distributed among these distances:
54 3 0.05
55 54 0.93
56 1 0.02
ACGTcount: A:0.25, C:0.33, G:0.25, T:0.17
Consensus pattern (54 bp):
CCATGGCGAACCTGTCAAAACAACACGAGCGTTCGACACGCCCGTGCCAAGAAC
Found at i:74200222 original size:31 final size:31
Alignment explanation
Indices: 74200187--74200249 Score: 126
Period size: 31 Copynumber: 2.0 Consensus size: 31
74200177 AGTTAGTTTC
74200187 AAGAACGATTAATTATAAATATTTAAAACTT
1 AAGAACGATTAATTATAAATATTTAAAACTT
74200218 AAGAACGATTAATTATAAATATTTAAAACTT
1 AAGAACGATTAATTATAAATATTTAAAACTT
74200249 A
1 A
74200250 CCTGTCACGA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.52, C:0.06, G:0.06, T:0.35
Consensus pattern (31 bp):
AAGAACGATTAATTATAAATATTTAAAACTT
Found at i:74208390 original size:38 final size:38
Alignment explanation
Indices: 74208339--74208411 Score: 119
Period size: 38 Copynumber: 1.9 Consensus size: 38
74208329 ATTCATTAGC
*
74208339 GTGGTGCTAAGTGGATATACCACGGTTAAACATGTAAT
1 GTGGTGCTAAGTGGATATACCACAGTTAAACATGTAAT
* *
74208377 GTGGTGCTAAGTGGATATGCCACAGTTATACATGT
1 GTGGTGCTAAGTGGATATACCACAGTTAAACATGT
74208412 TAATTTGAAA
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
38 32 1.00
ACGTcount: A:0.29, C:0.14, G:0.27, T:0.30
Consensus pattern (38 bp):
GTGGTGCTAAGTGGATATACCACAGTTAAACATGTAAT
Found at i:74222237 original size:24 final size:25
Alignment explanation
Indices: 74222204--74222264 Score: 70
Period size: 25 Copynumber: 2.4 Consensus size: 25
74222194 CTAAAGTGTT
* *
74222204 AATACACCAACTTACAACTA-TCCAA
1 AATA-ACCAACTCACAACCATTCCAA
*
74222229 AATAACCAACTCATAACCATTCCAA
1 AATAACCAACTCACAACCATTCCAA
74222254 AATAAGCCAAC
1 AATAA-CCAAC
74222265 ATATAAGGTA
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
24 12 0.39
25 14 0.45
26 5 0.16
ACGTcount: A:0.49, C:0.31, G:0.02, T:0.18
Consensus pattern (25 bp):
AATAACCAACTCACAACCATTCCAA
Found at i:74224333 original size:48 final size:48
Alignment explanation
Indices: 74224264--74224578 Score: 420
Period size: 48 Copynumber: 6.6 Consensus size: 48
74224254 TAAAGTACCA
* * * * * *
74224264 ATGCCATGTCCCCGACATGGTCTTACA-AGACTCCACATATCATCGTCA
1 ATGCCATGTCCCAGACATGGTCTTACACTGGC-ACACATATCATCGCCG
74224312 ATGCCATGTCCCAGACATGGTCTTACACTGGCACACATATCATTC-CCG
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCACACATATCA-TCGCCG
* * * **
74224360 ATGCTATGTCCTAGACATGGTCTTACACTGGTACACATATCATCGTTG
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCACACATATCATCGCCG
* * *
74224408 ATGTCATGCCCCAGACATGGTCTTACACTGGCACACATATCATCGTCG
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCACACATATCATCGCCG
* *
74224456 ATGGCATGTCCCAAACATGGTCTTACACTGGCACACATATCATCGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCACACATATCATCGCCG
*
74224504 ATGCCATGTCCCAGACATGGTCTTACACTGGCACACATATCATCGCCA
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCACACATATCATCGCCG
* *
74224552 ATGCCA-ATCCCAGACATGTTCTTACAC
1 ATGCCATGTCCCAGACATGGTCTTACAC
74224579 ATGCACATTT
Statistics
Matches: 238, Mismatches: 26, Indels: 7
0.88 0.10 0.03
Matches are distributed among these distances:
47 21 0.09
48 213 0.89
49 4 0.02
ACGTcount: A:0.26, C:0.31, G:0.17, T:0.26
Consensus pattern (48 bp):
ATGCCATGTCCCAGACATGGTCTTACACTGGCACACATATCATCGCCG
Found at i:74228516 original size:40 final size:40
Alignment explanation
Indices: 74228453--74228673 Score: 264
Period size: 40 Copynumber: 5.5 Consensus size: 40
74228443 TCGGATGATG
*
74228453 TCCGGGCTAAGTCCTGAAGGCATTTGTGCAAGTTACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTATA
* *
74228493 TCCGGGCTAAGTCCCGAAAGCATTTGTGCGAGTAGTTGCTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-A--AGTTACTATA
* * *
74228536 CCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTATA
* ** * *
74228576 TTCGGGCTAAGTCCCGAAGGCATTCATGCTAGTGACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTATA
* * * *
74228616 TCTGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTATA
*
74228656 TCC-GGCTAAATCCCGAAG
1 TCCGGGCTAAGTCCCGAAG
74228674 ATACTTGGGT
Statistics
Matches: 155, Mismatches: 23, Indels: 7
0.84 0.12 0.04
Matches are distributed among these distances:
39 13 0.08
40 105 0.68
41 1 0.01
43 36 0.23
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.27
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTATA
Found at i:74228593 original size:83 final size:80
Alignment explanation
Indices: 74228454--74228672 Score: 255
Period size: 83 Copynumber: 2.7 Consensus size: 80
74228444 CGGATGATGT
* * * **
74228454 CCGGGCTAAGTCCTGAAGGCATTTGTGCAAGTTACTATATCCGGGCTAAGTCCCGAAAGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTGACTATATTCGGGCTAAGTCCCGAAAGCATTCA
74228519 TGCGAGTAGTTG-CTATAC
66 TGC---TAG-TGACTATAC
* *
74228537 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATTCGGGCTAAGTCCCGAAGGCATTCA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTGACTATATTCGGGCTAAGTCCCGAAAGCATTCA
*
74228602 TGCTAGTGACTATAT
66 TGCTAGTGACTATAC
* * * * *
74228617 CTGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CTATA-TCCGGCTAAATCCCGAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAG-TGACTATATTCGGGCTAAGTCCCGAA
74228673 GATACTTGGG
Statistics
Matches: 121, Mismatches: 13, Indels: 8
0.85 0.09 0.06
Matches are distributed among these distances:
79 17 0.14
80 41 0.34
81 2 0.02
83 61 0.50
ACGTcount: A:0.24, C:0.23, G:0.26, T:0.26
Consensus pattern (80 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTGACTATATTCGGGCTAAGTCCCGAAAGCATTCA
TGCTAGTGACTATAC
Found at i:74243077 original size:35 final size:35
Alignment explanation
Indices: 74243031--74243097 Score: 118
Period size: 35 Copynumber: 1.9 Consensus size: 35
74243021 CTCTTTTCCC
74243031 ATTCCCTATATTTCTCC-CTCTCGAAAGAGTGTCTA
1 ATTCCCTATATTTC-CCACTCTCGAAAGAGTGTCTA
74243066 ATTCCCTATATTTCCCACTCTCGAAAGAGTGT
1 ATTCCCTATATTTCCCACTCTCGAAAGAGTGT
74243098 TTTCAAGGTT
Statistics
Matches: 31, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
34 2 0.06
35 29 0.94
ACGTcount: A:0.24, C:0.28, G:0.12, T:0.36
Consensus pattern (35 bp):
ATTCCCTATATTTCCCACTCTCGAAAGAGTGTCTA
Found at i:74244704 original size:32 final size:32
Alignment explanation
Indices: 74244663--74244726 Score: 110
Period size: 32 Copynumber: 2.0 Consensus size: 32
74244653 ATGCGACCAA
*
74244663 CATGAATCTTGGTGCATGCAGCAACCCTACAC
1 CATGAATCTTGGTGCAAGCAGCAACCCTACAC
*
74244695 CATGAATCTTGGTGCAAGCAGTAACCCTACAC
1 CATGAATCTTGGTGCAAGCAGCAACCCTACAC
74244727 GAGCATAAGT
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
32 30 1.00
ACGTcount: A:0.30, C:0.30, G:0.19, T:0.22
Consensus pattern (32 bp):
CATGAATCTTGGTGCAAGCAGCAACCCTACAC
Found at i:74264491 original size:19 final size:20
Alignment explanation
Indices: 74264445--74264493 Score: 57
Period size: 19 Copynumber: 2.5 Consensus size: 20
74264435 AAAATTTACA
74264445 TCACATATTTTCTATAAATTT
1 TCACA-ATTTTCTATAAATTT
* *
74264466 T-AGAATTTTC-ATCAATTT
1 TCACAATTTTCTATAAATTT
74264484 TCACAATTTT
1 TCACAATTTT
74264494 ACATTTTAGT
Statistics
Matches: 24, Mismatches: 3, Indels: 4
0.77 0.10 0.13
Matches are distributed among these distances:
18 8 0.33
19 13 0.54
20 2 0.08
21 1 0.04
ACGTcount: A:0.33, C:0.14, G:0.02, T:0.51
Consensus pattern (20 bp):
TCACAATTTTCTATAAATTT
Found at i:74268502 original size:22 final size:21
Alignment explanation
Indices: 74268460--74268530 Score: 56
Period size: 22 Copynumber: 3.1 Consensus size: 21
74268450 TGTTTTAGTA
74268460 TTATTTTTATTTGTCTT-AATAT
1 TTATTTTTATTT-T-TTAAATAT
74268482 TTATTTTTATGTTTTTAAATATAT
1 TTATTTTTAT-TTTTT-AA-ATAT
74268506 TTGATTTATTATATTTTTAAA-AT
1 TT-ATTT-TTAT-TTTTTAAATAT
74268529 TT
1 TT
74268531 TTTATTTAAT
Statistics
Matches: 42, Mismatches: 1, Indels: 11
0.78 0.02 0.20
Matches are distributed among these distances:
21 2 0.05
22 11 0.26
23 7 0.17
24 7 0.17
25 6 0.14
26 9 0.21
ACGTcount: A:0.28, C:0.01, G:0.04, T:0.66
Consensus pattern (21 bp):
TTATTTTTATTTTTTAAATAT
Found at i:74268524 original size:26 final size:24
Alignment explanation
Indices: 74268478--74268526 Score: 71
Period size: 26 Copynumber: 2.0 Consensus size: 24
74268468 ATTTGTCTTA
*
74268478 ATATTTATTTTTATGTTTTTAAAT
1 ATATTTATTTTTATATTTTTAAAT
74268502 ATATTTGATTTATTATATTTTTAAA
1 ATATTT-ATTT-TTATATTTTTAAA
74268527 ATTTTTTATT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 6 0.27
25 4 0.18
26 12 0.55
ACGTcount: A:0.33, C:0.00, G:0.04, T:0.63
Consensus pattern (24 bp):
ATATTTATTTTTATATTTTTAAAT
Found at i:74268537 original size:25 final size:26
Alignment explanation
Indices: 74268481--74268538 Score: 75
Period size: 25 Copynumber: 2.3 Consensus size: 26
74268471 TGTCTTAATA
*
74268481 TTTATTT-TTATGTTTTTAAATATAT
1 TTTATTTATTATATTTTTAAATATAT
* *
74268506 TTGATTTATTATATTTTTAAA-ATTT
1 TTTATTTATTATATTTTTAAATATAT
74268531 TTTATTTA
1 TTTATTTA
74268539 ATGAAATAAG
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
25 16 0.57
26 12 0.43
ACGTcount: A:0.29, C:0.00, G:0.03, T:0.67
Consensus pattern (26 bp):
TTTATTTATTATATTTTTAAATATAT
Found at i:74269272 original size:17 final size:18
Alignment explanation
Indices: 74269250--74269284 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
74269240 AGTGATATTT
74269250 GAATTGAATGA-GAATTG
1 GAATTGAATGATGAATTG
*
74269267 GAATTGATTGATGAATTG
1 GAATTGAATGATGAATTG
74269285 TATAATGATT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 10 0.62
18 6 0.38
ACGTcount: A:0.37, C:0.00, G:0.29, T:0.34
Consensus pattern (18 bp):
GAATTGAATGATGAATTG
Found at i:74273512 original size:29 final size:30
Alignment explanation
Indices: 74273484--74273539 Score: 80
Period size: 28 Copynumber: 1.9 Consensus size: 30
74273474 ACAATTTGCA
*
74273484 ATATTATACCTC-AACTTT-ATTTTGGTGC
1 ATATTATACATCAAACTTTAATTTTGGTGC
*
74273512 ATTTTATACATCAAACTTTAATTTTGGT
1 ATATTATACATCAAACTTTAATTTTGGT
74273540 TGAACTTTCA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
28 10 0.42
29 6 0.25
30 8 0.33
ACGTcount: A:0.29, C:0.14, G:0.09, T:0.48
Consensus pattern (30 bp):
ATATTATACATCAAACTTTAATTTTGGTGC
Found at i:74275068 original size:17 final size:17
Alignment explanation
Indices: 74275046--74275087 Score: 75
Period size: 17 Copynumber: 2.5 Consensus size: 17
74275036 AATTAATTTT
74275046 ATTTTTATAAAATAACC
1 ATTTTTATAAAATAACC
74275063 ATTTTTATAAAATAACC
1 ATTTTTATAAAATAACC
*
74275080 ATTCTTAT
1 ATTTTTAT
74275088 TTAATTTTAA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
17 24 1.00
ACGTcount: A:0.43, C:0.12, G:0.00, T:0.45
Consensus pattern (17 bp):
ATTTTTATAAAATAACC
Found at i:74286727 original size:93 final size:93
Alignment explanation
Indices: 74286568--74286738 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 93
74286558 GGATGGTTGA
* *
74286568 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAATGTCTGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAATGCCCGAACTCGTTGAGT
74286633 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* * *
74286661 GCATCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAATGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAATGCCCGAACTCGTTGAGT
74286726 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
74286739 ACTTAGGGGC
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.21, C:0.20, G:0.29, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAATGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:74286741 original size:46 final size:46
Alignment explanation
Indices: 74286572--74286743 Score: 199
Period size: 46 Copynumber: 3.7 Consensus size: 46
74286562 GGTTGAGCAT
* *
74286572 CCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAATGT
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGC
* * * *
74286618 CTGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGGC
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--GC
*
74286663 ATCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAATGC
1 --CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGC
*
74286711 CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
74286744 GGGGCGGGTT
Statistics
Matches: 104, Mismatches: 13, Indels: 18
0.77 0.10 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 2 0.02
46 58 0.56
47 26 0.25
48 4 0.04
50 5 0.05
51 2 0.02
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.30
Consensus pattern (46 bp):
CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGC
Found at i:74288600 original size:95 final size:94
Alignment explanation
Indices: 74288436--74288611 Score: 259
Period size: 95 Copynumber: 1.9 Consensus size: 94
74288426 TAGGGTATAA
* * * *
74288436 TGCCGATCCATGTCCCAGACATGGTCTTACTCTGGCTCATCCATCAAGTCGATGCCATGTCCCAG
1 TGCCGATCCATGTCCCAAACATGGTCTTACACTAGCTCATCCATCAAGTCGATGCCATGTCCCAA
74288501 ACATGGTCTTACACTGACACCTCTATACG
66 ACATGGTCTTACACTGACACCTCTATACG
74288530 TGCCGATGCCATGTCCCAAACAT-GTCTTACACTAGCTC-TCGTC-TCAATGTCGATGCCATGTC
1 TGCCGAT-CCATGTCCCAAACATGGTCTTACACTAGCTCATC--CATCAA-GTCGATGCCATGTC
74288592 CCAAACATGGTCTTACACTG
62 CCAAACATGGTCTTACACTG
74288612 GCTCTCATAA
Statistics
Matches: 74, Mismatches: 4, Indels: 7
0.87 0.05 0.08
Matches are distributed among these distances:
93 2 0.03
94 24 0.32
95 48 0.65
ACGTcount: A:0.23, C:0.32, G:0.18, T:0.27
Consensus pattern (94 bp):
TGCCGATCCATGTCCCAAACATGGTCTTACACTAGCTCATCCATCAAGTCGATGCCATGTCCCAA
ACATGGTCTTACACTGACACCTCTATACG
Found at i:74288637 original size:47 final size:46
Alignment explanation
Indices: 74288434--74288656 Score: 199
Period size: 47 Copynumber: 4.8 Consensus size: 46
74288424 CATAGGGTAT
* *
74288434 AATGCCGAT-CCATGTCCCAGACATGGTCTTACTCTGGCTCATCCATC
1 AATGTCGATGCCATGTCCCAGACATGGTCTTACACTGGCTC-T-CATC
* *
74288481 AA-GTCGATGCCATGTCCCAGACATGGTCTTACACTGACACCTCTAT-
1 AATGTCGATGCCATGTCCCAGACATGGTCTTACACTGGC-TCTC-ATC
* * * * *
74288527 ACGTGCCGATGCCATGTCCCAAACAT-GTCTTACACTAGCTCTCGTCTC
1 A-ATGTCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTC--ATC
*
74288575 AATGTCGATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCAT-
1 AATGTCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATC
* *
74288620 AATGTGGCTAATG-CATGTCCTAGACAT-GTCTTACACT
1 AATGT--C-GATGCCATGTCCCAGACATGGTCTTACACT
74288657 AGCACACAAA
Statistics
Matches: 147, Mismatches: 18, Indels: 23
0.78 0.10 0.12
Matches are distributed among these distances:
45 5 0.03
46 21 0.14
47 80 0.54
48 41 0.28
ACGTcount: A:0.24, C:0.30, G:0.17, T:0.28
Consensus pattern (46 bp):
AATGTCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATC
Found at i:74295895 original size:98 final size:97
Alignment explanation
Indices: 74295691--74296013 Score: 269
Period size: 98 Copynumber: 3.4 Consensus size: 97
74295681 TAGGGTATAA
* * *
74295691 TGCCGATGCCATGTTCCAAACATGGTCTTACTCTGGCTT-ATC-CATCAAGT--CGATGCCATGT
1 TGCCGATGCCATGTCCCAAACATGGTCTTACACTGGCTTCA-CATATC-AGTGCCGATGCCATGT
* ***
74295752 CCCAAACATGGTCTTACACTGATTATCGAAATGA-G
64 CCCAAACATGGTCTTACACTGA-CATCTCTAT-ACG
* * * *
74295787 -GTCGACGCCATGTCCCAAACATGGTCTTACACTAGCTCTCACATATCAGTGCCAATGCCATGTC
1 TGCCGATGCCATGTCCCAAACATGGTCTTACACTGGCT-TCACATATCAGTGCCGATGCCATGTC
*
74295851 CCAGACATGGTCTTACACTGACATCTCTATACG
65 CCAAACATGGTCTTACACTGACATCTCTATACG
* ** * *
74295884 TGCCGATGCCATGTCCTAGGCATGGTCTTACACT-G--ACACATCTC-GTAGCCGATG-CATGTC
1 TGCCGATGCCATGTCCCAAACATGGTCTTACACTGGCTTCACATATCAGT-GCCGATGCCATGTC
** * *
74295944 CCAAACAT-GTCTTACACT-AGTTCTCGTCT-CAA
65 CCAAACATGGTCTTACACTGACATCTC-TATAC-G
* *
74295976 TGCCGATGCCATGTCCTAGACATGGTCTTACACTGGCT
1 TGCCGATGCCATGTCCCAAACATGGTCTTACACTGGCT
74296014 CTCATAATGT
Statistics
Matches: 188, Mismatches: 26, Indels: 27
0.78 0.11 0.11
Matches are distributed among these distances:
91 6 0.03
92 45 0.24
93 16 0.09
94 13 0.07
95 32 0.17
96 6 0.03
97 11 0.06
98 59 0.31
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.28
Consensus pattern (97 bp):
TGCCGATGCCATGTCCCAAACATGGTCTTACACTGGCTTCACATATCAGTGCCGATGCCATGTCC
CAAACATGGTCTTACACTGACATCTCTATACG
Found at i:74295908 original size:48 final size:46
Alignment explanation
Indices: 74295691--74296010 Score: 190
Period size: 48 Copynumber: 6.8 Consensus size: 46
74295681 TAGGGTATAA
* * * * * *
74295691 TGCCGATGCCATGTTCCAAACATGGTCTTACTCTGGCTTATC-CATCA
1 TGCCGATGCCATGTCCCAGACATGGTCTTACACTGAC--ATCTCTTCG
* * * * ***
74295738 AGTCGATGCCATGTCCCAAACATGGTCTTACACTGATTATCGAAAT-G
1 TGCCGATGCCATGTCCCAGACATGGTCTTACACTGA-CATC-TCTTCG
* * * *
74295785 AGGTCGACGCCATGTCCCAAACATGGTCTTACACT-AGC-TCTCACATATCAG
1 -TGCCGATGCCATGTCCCAGACATGGTCTTACACTGA-CATCT--C-T-TC-G
*
74295836 TGCCAATGCCATGTCCCAGACATGGTCTTACACTGACATCTCTATACG
1 TGCCGATGCCATGTCCCAGACATGGTCTTACACTGACATCTCT-T-CG
* *
74295884 TGCCGATGCCATGTCCTAGGCATGGTCTTACACTGACA-CATC-TCG
1 TGCCGATGCCATGTCCCAGACATGGTCTTACACTGACATC-TCTTCG
* ** *
74295929 TAGCCGATG-CATGTCCCAAACAT-GTCTTACACT-AGTTCTCGTCTCAA
1 T-GCCGATGCCATGTCCCAGACATGGTCTTACACTGACATCTC-T-TC-G
*
74295976 TGCCGATGCCATGTCCTAGACATGGTCTTACACTG
1 TGCCGATGCCATGTCCCAGACATGGTCTTACACTG
74296011 GCTCTCATAA
Statistics
Matches: 219, Mismatches: 31, Indels: 44
0.74 0.11 0.15
Matches are distributed among these distances:
43 3 0.01
44 11 0.05
45 14 0.06
46 22 0.10
47 46 0.21
48 85 0.39
49 3 0.01
50 30 0.14
51 5 0.02
ACGTcount: A:0.24, C:0.29, G:0.18, T:0.28
Consensus pattern (46 bp):
TGCCGATGCCATGTCCCAGACATGGTCTTACACTGACATCTCTTCG
Found at i:74302827 original size:53 final size:53
Alignment explanation
Indices: 74302742--74302844 Score: 188
Period size: 53 Copynumber: 1.9 Consensus size: 53
74302732 CTAAGTATGC
74302742 AAACTATATGAATGAAATATATTTTAGCAAAATGAAACACAATTTGCAACTGT
1 AAACTATATGAATGAAATATATTTTAGCAAAATGAAACACAATTTGCAACTGT
* *
74302795 AAACTATATGAATGAAATATATTTTAGTAAAATTAAACACAATTTGCAAC
1 AAACTATATGAATGAAATATATTTTAGCAAAATGAAACACAATTTGCAAC
74302845 AATTATAACA
Statistics
Matches: 48, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
53 48 1.00
ACGTcount: A:0.49, C:0.11, G:0.10, T:0.31
Consensus pattern (53 bp):
AAACTATATGAATGAAATATATTTTAGCAAAATGAAACACAATTTGCAACTGT
Found at i:74305681 original size:15 final size:16
Alignment explanation
Indices: 74305661--74305690 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
74305651 TTAGAATTTA
74305661 TATTAAAAT-TAAATT
1 TATTAAAATATAAATT
74305676 TATTAAAATATAAAT
1 TATTAAAATATAAAT
74305691 ATGACTCATA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 9 0.64
16 5 0.36
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (16 bp):
TATTAAAATATAAATT
Found at i:74306007 original size:18 final size:18
Alignment explanation
Indices: 74305972--74306008 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
74305962 TGAGTTTTTA
*
74305972 AATTCGAATAACTCGAAT
1 AATTCGAATAAATCGAAT
*
74305990 AATTCGAATAAATTGAAT
1 AATTCGAATAAATCGAAT
74306008 A
1 A
74306009 TCAATCTATA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.49, C:0.11, G:0.11, T:0.30
Consensus pattern (18 bp):
AATTCGAATAAATCGAAT
Found at i:74306518 original size:17 final size:17
Alignment explanation
Indices: 74306498--74306580 Score: 55
Period size: 17 Copynumber: 4.8 Consensus size: 17
74306488 ATTTATATCT
74306498 ATTATTTATATTATTAA
1 ATTATTTATATTATTAA
* *
74306515 ATTAAATTTCACATT-TTAT
1 ATT--ATTT-ATATTATTAA
* *
74306534 ATTATTTATATAATTGA
1 ATTATTTATATTATTAA
*
74306551 ATTATTTAGTCA-TATTGA
1 ATTATTTA-T-ATTATTAA
74306569 A-TATTTATATTA
1 ATTATTTATATTA
74306581 AAATTGAATT
Statistics
Matches: 52, Mismatches: 7, Indels: 15
0.70 0.09 0.20
Matches are distributed among these distances:
15 1 0.02
16 6 0.12
17 23 0.44
18 7 0.13
19 11 0.21
20 4 0.08
ACGTcount: A:0.39, C:0.04, G:0.04, T:0.54
Consensus pattern (17 bp):
ATTATTTATATTATTAA
Found at i:74306569 original size:18 final size:17
Alignment explanation
Indices: 74306534--74306593 Score: 61
Period size: 17 Copynumber: 3.4 Consensus size: 17
74306524 CACATTTTAT
74306534 ATTATTTATATAATTGA
1 ATTATTTATATAATTGA
74306551 ATTATTTAGTCAT-ATTGA
1 ATTATTTA-T-ATAATTGA
74306569 A-TATTTATATTAAAATTGA
1 ATTATTTATA-T--AATTGA
74306588 ATTATT
1 ATTATT
74306594 AATGATGCCA
Statistics
Matches: 36, Mismatches: 0, Indels: 11
0.77 0.00 0.23
Matches are distributed among these distances:
15 1 0.03
16 2 0.06
17 14 0.39
18 7 0.19
19 8 0.22
20 4 0.11
ACGTcount: A:0.40, C:0.02, G:0.07, T:0.52
Consensus pattern (17 bp):
ATTATTTATATAATTGA
Found at i:74310344 original size:41 final size:41
Alignment explanation
Indices: 74310173--74310332 Score: 168
Period size: 41 Copynumber: 3.9 Consensus size: 41
74310163 GGGTCTAAAT
74310173 CCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGCTAATAA
1 CCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGCTAATAA
* * * ** *
74310214 CCGAACTTAGTTTCGAAGGGCTTTAAAGCCAGTG-TCATAA
1 CCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGCTAATAA
* * *
74310254 CCG-GACTTAGT-TCCGAAGGGCCTTCGAGCCAGTGGTCTAAT--
1 CCGAG-CTTGGTCT-CGAAGGGCTTTTGAGCCAGT-G-CTAATAA
74310295 CCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGCTAA
1 CCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGCTAA
74310333 GAATCGGGCT
Statistics
Matches: 98, Mismatches: 14, Indels: 16
0.77 0.11 0.12
Matches are distributed among these distances:
39 5 0.05
40 32 0.33
41 56 0.57
42 2 0.02
43 3 0.03
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.26
Consensus pattern (41 bp):
CCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGCTAATAA
Found at i:74312456 original size:54 final size:54
Alignment explanation
Indices: 74312356--74312496 Score: 212
Period size: 54 Copynumber: 2.6 Consensus size: 54
74312346 GGAAGCGCCT
* *
74312356 TGGTGGCTATGCCACAATTTATCTAATCTGGTGGCTCTGCCACATATATCTGTCC
1 TGGTGGCTATGCCACAA-TTATCTGATTTGGTGGCTCTGCCACATATATCTGTCC
* *
74312411 TGGTGGCTATGCCACAATTATTTGATTTGGTGGCTCTGCCACATATATCTGTTC
1 TGGTGGCTATGCCACAATTATCTGATTTGGTGGCTCTGCCACATATATCTGTCC
*
74312465 TGGTGGCTCTGCCACAA-TATCTGTATTTGGTG
1 TGGTGGCTATGCCACAATTATCTG-ATTTGGTG
74312497 ACTTCGTCAC
Statistics
Matches: 79, Mismatches: 6, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
53 5 0.06
54 57 0.72
55 17 0.22
ACGTcount: A:0.18, C:0.22, G:0.23, T:0.37
Consensus pattern (54 bp):
TGGTGGCTATGCCACAATTATCTGATTTGGTGGCTCTGCCACATATATCTGTCC
Found at i:74312495 original size:27 final size:27
Alignment explanation
Indices: 74312356--74312514 Score: 148
Period size: 27 Copynumber: 5.9 Consensus size: 27
74312346 GGAAGCGCCT
* *
74312356 TGGTGGCTATGCCACAATTTATCT-AATC
1 TGGTGGCTCTGCCACAA--TATCTGTATC
*
74312384 TGGTGGCTCTGCCACATATATCTGT-CC
1 TGGTGGCTCTGCCACA-ATATCTGTATC
* * *
74312411 TGGTGGCTATGCCACAATTATTTG-ATT
1 TGGTGGCTCTGCCACAA-TATCTGTATC
74312438 TGGTGGCTCTGCCACATATATCTGT-TC
1 TGGTGGCTCTGCCACA-ATATCTGTATC
*
74312465 TGGTGGCTCTGCCACAATATCTGTATT
1 TGGTGGCTCTGCCACAATATCTGTATC
* *
74312492 TGGTGACT-TCGTCACAATATCTG
1 TGGTGGCTCT-GCCACAATATCTG
74312515 GCAGCCTCAC
Statistics
Matches: 110, Mismatches: 13, Indels: 17
0.79 0.09 0.12
Matches are distributed among these distances:
26 10 0.09
27 83 0.75
28 16 0.15
29 1 0.01
ACGTcount: A:0.19, C:0.23, G:0.21, T:0.36
Consensus pattern (27 bp):
TGGTGGCTCTGCCACAATATCTGTATC
Found at i:74319020 original size:131 final size:131
Alignment explanation
Indices: 74318786--74319047 Score: 488
Period size: 131 Copynumber: 2.0 Consensus size: 131
74318776 AATAATATAG
* *
74318786 GTTATTTTGTGTCATAAAATGTTGGGTAATAAAATAACAAAAGGATGAAAAGAGCAAAGTTTTGT
1 GTTATTTTGTGTCATAAAATGTTGGGTAATAAAATAACAAAAGGATGAAAAGAACAAAATTTTGT
*
74318851 TCATCTTTGTTCATCATAGCCGAAAGTTAGAGAAGAGAAAGGAGAGGAGAAAGCTCTTGAGTATT
66 CCATCTTTGTTCATCATAGCCGAAAGTTAGAGAAGAGAAAGGAGAGGAGAAAGCTCTTGAGTATT
74318916 C
131 C
74318917 GTTATTTTGTGTCATAAAATGTTGGGTAATAAAATAACAAAAGGATGAAAAGAACAAAATTTTGT
1 GTTATTTTGTGTCATAAAATGTTGGGTAATAAAATAACAAAAGGATGAAAAGAACAAAATTTTGT
*
74318982 CCATCTTTGTTCATCATAGCCGAAAGTTAGAGAAGAGAAAGGAGAGGCGAAAGCTCTTGAGTATT
66 CCATCTTTGTTCATCATAGCCGAAAGTTAGAGAAGAGAAAGGAGAGGAGAAAGCTCTTGAGTATT
74319047 C
131 C
74319048 AGTCACTAGG
Statistics
Matches: 127, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
131 127 1.00
ACGTcount: A:0.39, C:0.10, G:0.23, T:0.29
Consensus pattern (131 bp):
GTTATTTTGTGTCATAAAATGTTGGGTAATAAAATAACAAAAGGATGAAAAGAACAAAATTTTGT
CCATCTTTGTTCATCATAGCCGAAAGTTAGAGAAGAGAAAGGAGAGGAGAAAGCTCTTGAGTATT
C
Found at i:74320546 original size:27 final size:26
Alignment explanation
Indices: 74320489--74320629 Score: 149
Period size: 27 Copynumber: 5.2 Consensus size: 26
74320479 GGAAGCGCCT
* * *
74320489 TGGTGGCTATGCCACAATTTATCTAATC
1 TGGTGGCTCTGCCAC-ATATATCT-GTC
74320517 TGGTGGCTCTGCCACATATATCTGTCC
1 TGGTGGCTCTGCCACATATATCTGT-C
*
74320544 TGGTGGCTATGCCAC-TATTATCTGATC
1 TGGTGGCTCTGCCACATA-TATCTG-TC
*
74320571 TGGTGGCTCTGCCACATGTATCTGTTC
1 TGGTGGCTCTGCCACATATATCTG-TC
* *
74320598 TGGTGGCTCTGCCACAATATATGTATC
1 TGGTGGCTCTGCCAC-ATATATCTGTC
74320625 TGGTG
1 TGGTG
74320630 ACTTCGTCAC
Statistics
Matches: 98, Mismatches: 10, Indels: 11
0.82 0.08 0.09
Matches are distributed among these distances:
26 3 0.03
27 73 0.74
28 22 0.22
ACGTcount: A:0.18, C:0.23, G:0.23, T:0.35
Consensus pattern (26 bp):
TGGTGGCTCTGCCACATATATCTGTC
Found at i:74320576 original size:54 final size:53
Alignment explanation
Indices: 74320489--74320629 Score: 192
Period size: 54 Copynumber: 2.6 Consensus size: 53
74320479 GGAAGCGCCT
*
74320489 TGGTGGCTATGCCACAATTTATCTAATCTGGTGGCTCTGCCACATATATCTGTCC
1 TGGTGGCTATGCCAC-A-TTATCTGATCTGGTGGCTCTGCCACATATATCTGTCC
* *
74320544 TGGTGGCTATGCCACTATTATCTGATCTGGTGGCTCTGCCACATGTATCTGTTC
1 TGGTGGCTATGCCAC-ATTATCTGATCTGGTGGCTCTGCCACATATATCTGTCC
* * *
74320598 TGGTGGCTCTGCCACAATATATGTATCTGGTG
1 TGGTGGCTATGCCACATTATCTG-ATCTGGTG
74320630 ACTTCGTCAC
Statistics
Matches: 78, Mismatches: 7, Indels: 3
0.89 0.08 0.03
Matches are distributed among these distances:
53 6 0.08
54 56 0.72
55 16 0.21
ACGTcount: A:0.18, C:0.23, G:0.23, T:0.35
Consensus pattern (53 bp):
TGGTGGCTATGCCACATTATCTGATCTGGTGGCTCTGCCACATATATCTGTCC
Found at i:74322017 original size:18 final size:16
Alignment explanation
Indices: 74321966--74322010 Score: 54
Period size: 17 Copynumber: 2.6 Consensus size: 16
74321956 TCCCTACAAT
*
74321966 TTTATATTTATTCTTAA
1 TTTATATTTA-ACTTAA
74321983 TTTATATTTAACTTAA
1 TTTATATTTAACTTAA
74321999 TATTATTATTTA
1 T-TTA-TATTTA
74322011 CATTAATCCC
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
16 6 0.24
17 13 0.52
18 6 0.24
ACGTcount: A:0.33, C:0.04, G:0.00, T:0.62
Consensus pattern (16 bp):
TTTATATTTAACTTAA
Found at i:74323335 original size:17 final size:18
Alignment explanation
Indices: 74323313--74323349 Score: 58
Period size: 17 Copynumber: 2.1 Consensus size: 18
74323303 TGTCGTTTCC
74323313 AAAATTTGAAAAT-TTTT
1 AAAATTTGAAAATATTTT
*
74323330 AAAATTTTAAAATATTTT
1 AAAATTTGAAAATATTTT
74323348 AA
1 AA
74323350 TTATAAAATA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 12 0.67
18 6 0.33
ACGTcount: A:0.51, C:0.00, G:0.03, T:0.46
Consensus pattern (18 bp):
AAAATTTGAAAATATTTT
Found at i:74323363 original size:21 final size:23
Alignment explanation
Indices: 74323337--74323380 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
74323327 TTTAAAATTT
74323337 TAAAATA-T-TTTAATTATAAAA
1 TAAAATATTATTTAATTATAAAA
*
74323358 TAAAATATTATTTATTTATAAAA
1 TAAAATATTATTTAATTATAAAA
74323381 ATAATAAAAG
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
21 7 0.35
22 1 0.05
23 12 0.60
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (23 bp):
TAAAATATTATTTAATTATAAAA
Found at i:74324501 original size:9 final size:9
Alignment explanation
Indices: 74324465--74324511 Score: 51
Period size: 9 Copynumber: 5.1 Consensus size: 9
74324455 TTTTTTATAT
74324465 AATATTAAAA
1 AATATT-AAA
*
74324475 AATATATAAT
1 AATAT-TAAA
74324485 AA-ATTAAA
1 AATATTAAA
74324493 AATATTAAA
1 AATATTAAA
*
74324502 AATATCAAA
1 AATATTAAA
74324511 A
1 A
74324512 TAAATATTTG
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
8 5 0.16
9 17 0.53
10 9 0.28
11 1 0.03
ACGTcount: A:0.68, C:0.02, G:0.00, T:0.30
Consensus pattern (9 bp):
AATATTAAA
Found at i:74324513 original size:17 final size:18
Alignment explanation
Indices: 74324460--74324497 Score: 53
Period size: 17 Copynumber: 2.2 Consensus size: 18
74324450 ATTATTTTTT
74324460 TATATAAT--ATTAAAAAA
1 TATATAATAAATT-AAAAA
74324477 TATATAATAAATTAAAAA
1 TATATAATAAATTAAAAA
74324495 TAT
1 TAT
74324498 TAAAAATATC
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
17 8 0.42
18 8 0.42
19 3 0.16
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (18 bp):
TATATAATAAATTAAAAA
Found at i:74324620 original size:22 final size:22
Alignment explanation
Indices: 74324562--74324620 Score: 57
Period size: 22 Copynumber: 2.7 Consensus size: 22
74324552 ATGTATATAT
*
74324562 AAATAATAATAAGATATATGTA
1 AAATAATAATAAAATATATGTA
* * * *
74324584 AATTAATAGGT-AAATATTTTTA
1 AAATAATA-ATAAAATATATGTA
74324606 AAATAATAATAAAAT
1 AAATAATAATAAAAT
74324621 TAATAAATAT
Statistics
Matches: 28, Mismatches: 7, Indels: 4
0.72 0.18 0.10
Matches are distributed among these distances:
21 1 0.04
22 26 0.93
23 1 0.04
ACGTcount: A:0.58, C:0.00, G:0.07, T:0.36
Consensus pattern (22 bp):
AAATAATAATAAAATATATGTA
Found at i:74324647 original size:29 final size:30
Alignment explanation
Indices: 74324594--74324655 Score: 108
Period size: 29 Copynumber: 2.1 Consensus size: 30
74324584 AATTAATAGG
*
74324594 TAAATATTTTTAAAATAATAATAAAATTAA
1 TAAATATCTTTAAAATAATAATAAAATTAA
74324624 TAAATATCTTT-AAATAATAATAAAATTAA
1 TAAATATCTTTAAAATAATAATAAAATTAA
74324653 TAA
1 TAA
74324656 TAAAATAAGT
Statistics
Matches: 31, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
29 21 0.68
30 10 0.32
ACGTcount: A:0.60, C:0.02, G:0.00, T:0.39
Consensus pattern (30 bp):
TAAATATCTTTAAAATAATAATAAAATTAA
Found at i:74324657 original size:32 final size:33
Alignment explanation
Indices: 74324583--74324659 Score: 99
Period size: 29 Copynumber: 2.4 Consensus size: 33
74324573 AGATATATGT
* *
74324583 AAATTAATAGGTAAATATTTTTAAAATAATAATA
1 AAATTAATA-ATAAATATCTTTAAAATAATAATA
74324617 AAA-T--TAATAAATATCTTT-AAATAATAATA
1 AAATTAATAATAAATATCTTTAAAATAATAATA
74324646 AAATTAATAATAAA
1 AAATTAATAATAAA
74324660 ATAAGTTTTA
Statistics
Matches: 38, Mismatches: 2, Indels: 8
0.79 0.04 0.17
Matches are distributed among these distances:
29 14 0.37
30 11 0.29
31 2 0.05
32 7 0.18
33 1 0.03
34 3 0.08
ACGTcount: A:0.60, C:0.01, G:0.03, T:0.36
Consensus pattern (33 bp):
AAATTAATAATAAATATCTTTAAAATAATAATA
Found at i:74324865 original size:25 final size:25
Alignment explanation
Indices: 74324832--74324957 Score: 234
Period size: 25 Copynumber: 5.0 Consensus size: 25
74324822 CTTAACTCGT
74324832 TTTTTAAATAAATTTTATTTTTTTG
1 TTTTTAAATAAATTTTATTTTTTTG
74324857 TTTTTAAATAAATTTTATTTTTTTG
1 TTTTTAAATAAATTTTATTTTTTTG
74324882 TTTTTAAATAAATTTTATTTTTTTG
1 TTTTTAAATAAATTTTATTTTTTTG
74324907 TTTTTAAATAAATTTTATTTTTTTG
1 TTTTTAAATAAATTTTATTTTTTTG
**
74324932 TTTAAAAATAAATTTTATTTTTTTG
1 TTTTTAAATAAATTTTATTTTTTTG
74324957 T
1 T
74324958 CTAAGTTTAT
Statistics
Matches: 99, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
25 99 1.00
ACGTcount: A:0.29, C:0.00, G:0.04, T:0.67
Consensus pattern (25 bp):
TTTTTAAATAAATTTTATTTTTTTG
Found at i:74325310 original size:15 final size:15
Alignment explanation
Indices: 74325290--74325319 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
74325280 AGTTTAAAGT
*
74325290 TTAAAATAATTGTAA
1 TTAAAATAATAGTAA
74325305 TTAAAATAATAGTAA
1 TTAAAATAATAGTAA
74325320 AAATAACAAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.57, C:0.00, G:0.07, T:0.37
Consensus pattern (15 bp):
TTAAAATAATAGTAA
Found at i:74327831 original size:17 final size:17
Alignment explanation
Indices: 74327809--74327850 Score: 75
Period size: 17 Copynumber: 2.5 Consensus size: 17
74327799 CTAGAGTCAT
74327809 ATTTCAAATCGCGGAAG
1 ATTTCAAATCGCGGAAG
74327826 ATTTCAAATCGCGGAAG
1 ATTTCAAATCGCGGAAG
*
74327843 CTTTCAAA
1 ATTTCAAA
74327851 ACCAATTTAA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
17 24 1.00
ACGTcount: A:0.36, C:0.19, G:0.19, T:0.26
Consensus pattern (17 bp):
ATTTCAAATCGCGGAAG
Found at i:74333441 original size:8 final size:8
Alignment explanation
Indices: 74333423--74333468 Score: 58
Period size: 8 Copynumber: 5.8 Consensus size: 8
74333413 TTTAAGAAAT
74333423 TAATAATTA
1 TAATAA-TA
74333432 TAATAATA
1 TAATAATA
*
74333440 TAATAGT-
1 TAATAATA
74333447 TAATAATA
1 TAATAATA
*
74333455 TAATAAAA
1 TAATAATA
74333463 TAATAA
1 TAATAA
74333469 AGAAATGAAA
Statistics
Matches: 33, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
7 6 0.18
8 21 0.64
9 6 0.18
ACGTcount: A:0.61, C:0.00, G:0.02, T:0.37
Consensus pattern (8 bp):
TAATAATA
Found at i:74333460 original size:23 final size:24
Alignment explanation
Indices: 74333422--74333467 Score: 76
Period size: 23 Copynumber: 2.0 Consensus size: 24
74333412 ATTTAAGAAA
*
74333422 TTAATAATTATAATAATATAATAG
1 TTAATAATTATAATAAAATAATAG
74333446 TTAATAA-TATAATAAAATAATA
1 TTAATAATTATAATAAAATAATA
74333468 AAGAAATGAA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
23 14 0.67
24 7 0.33
ACGTcount: A:0.59, C:0.00, G:0.02, T:0.39
Consensus pattern (24 bp):
TTAATAATTATAATAAAATAATAG
Found at i:74333479 original size:16 final size:15
Alignment explanation
Indices: 74333460--74333504 Score: 54
Period size: 16 Copynumber: 2.9 Consensus size: 15
74333450 TAATATAATA
*
74333460 AAATAATAAAGAAATG
1 AAATAAAAAAGAAA-G
74333476 AAATAAAAAAGAAAG
1 AAATAAAAAAGAAAG
*
74333491 AAAGAAAGAAAGAA
1 AAATAAA-AAAGAA
74333505 GGCACGATTA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
15 7 0.27
16 19 0.73
ACGTcount: A:0.76, C:0.00, G:0.16, T:0.09
Consensus pattern (15 bp):
AAATAAAAAAGAAAG
Found at i:74333492 original size:4 final size:4
Alignment explanation
Indices: 74333467--74333504 Score: 51
Period size: 4 Copynumber: 9.5 Consensus size: 4
74333457 ATAAAATAAT
*
74333467 AAAG AAATG AAAT AAA- AAAG AAAG AAAG AAAG AAAG AA
1 AAAG AAA-G AAAG AAAG AAAG AAAG AAAG AAAG AAAG AA
74333505 GGCACGATTA
Statistics
Matches: 31, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
3 3 0.10
4 24 0.77
5 4 0.13
ACGTcount: A:0.76, C:0.00, G:0.18, T:0.05
Consensus pattern (4 bp):
AAAG
Found at i:74336055 original size:10 final size:10
Alignment explanation
Indices: 74336024--74336055 Score: 55
Period size: 10 Copynumber: 3.2 Consensus size: 10
74336014 ACATTTGGTT
74336024 ATCATACCAA
1 ATCATACCAA
*
74336034 AACATACCAA
1 ATCATACCAA
74336044 ATCATACCAA
1 ATCATACCAA
74336054 AT
1 AT
74336056 AATCACATAA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
10 20 1.00
ACGTcount: A:0.53, C:0.28, G:0.00, T:0.19
Consensus pattern (10 bp):
ATCATACCAA
Found at i:74341874 original size:24 final size:24
Alignment explanation
Indices: 74341832--74341882 Score: 66
Period size: 24 Copynumber: 2.1 Consensus size: 24
74341822 TGGTTTTGAA
* * *
74341832 CTAGAGTGTCAAGTTCCTCTATTT
1 CTAGAGTGTCAACTACCTCTATCT
*
74341856 CTAGAGTGTCGACTACCTCTATCT
1 CTAGAGTGTCAACTACCTCTATCT
74341880 CTA
1 CTA
74341883 CTAGAATATC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.22, C:0.25, G:0.16, T:0.37
Consensus pattern (24 bp):
CTAGAGTGTCAACTACCTCTATCT
Found at i:74356843 original size:26 final size:26
Alignment explanation
Indices: 74356794--74356857 Score: 67
Period size: 26 Copynumber: 2.5 Consensus size: 26
74356784 TACGCCATAC
* **
74356794 AAGCTTTCCTTCAGATTATGCCAC-T
1 AAGCTTTCTTTCAGATTACACCACAT
* *
74356819 CAGGCTTTCTTTCATATTACACCACAT
1 -AAGCTTTCTTTCAGATTACACCACAT
74356846 AAGCTTTCTTTC
1 AAGCTTTCTTTC
74356858 CTGACGTGTT
Statistics
Matches: 31, Mismatches: 6, Indels: 2
0.79 0.15 0.05
Matches are distributed among these distances:
26 30 0.97
27 1 0.03
ACGTcount: A:0.23, C:0.28, G:0.09, T:0.39
Consensus pattern (26 bp):
AAGCTTTCTTTCAGATTACACCACAT
Found at i:74362090 original size:16 final size:17
Alignment explanation
Indices: 74362058--74362091 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
74362048 GGGGAGGGAG
74362058 TTTGTTTGATGTTTATT
1 TTTGTTTGATGTTTATT
*
74362075 TTTGTTT-ATTTTTATT
1 TTTGTTTGATGTTTATT
74362091 T
1 T
74362092 CATAATATTT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 9 0.56
17 7 0.44
ACGTcount: A:0.12, C:0.00, G:0.12, T:0.76
Consensus pattern (17 bp):
TTTGTTTGATGTTTATT
Found at i:74364590 original size:49 final size:49
Alignment explanation
Indices: 74364533--74364632 Score: 182
Period size: 49 Copynumber: 2.0 Consensus size: 49
74364523 CTTAATGATG
*
74364533 AGCATGTTACCTTTAGTGTTTTCGAATCTATTCAATGCAAGGATAAAGA
1 AGCATGTTACCTTTAGTGCTTTCGAATCTATTCAATGCAAGGATAAAGA
*
74364582 AGCATGTTACCTTTAGTGCTTTCGAATCTATTCAATGTAAGGATAAAGA
1 AGCATGTTACCTTTAGTGCTTTCGAATCTATTCAATGCAAGGATAAAGA
74364631 AG
1 AG
74364633 AATGCCATAC
Statistics
Matches: 49, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
49 49 1.00
ACGTcount: A:0.33, C:0.14, G:0.19, T:0.34
Consensus pattern (49 bp):
AGCATGTTACCTTTAGTGCTTTCGAATCTATTCAATGCAAGGATAAAGA
Found at i:74369844 original size:333 final size:333
Alignment explanation
Indices: 74368867--74370189 Score: 2567
Period size: 333 Copynumber: 4.0 Consensus size: 333
74368857 GATTGTACGG
74368867 ATTTTTGCATGCTTAATTTTGTGGGGTTACACACTGAGCTTACACAAAATCACTCTTTTCTATTT
1 ATTTTTGCATGCTTAATTTTGTGGGGTTACACACTGAGCTTACACAAAATCACTCTTTTCTATTT
*
74368932 ATTCTGTACAGGCAATCCACAGAGTTAGGCGGATCGGTGTAACAGAGACTCAGGGGTGGCCACTT
66 ATTCTGTACAGGCAATCCACAGAGTTAGGCGGATCGGTGCAACAGAGACTCAGGGGTGGCCACTT
74368997 TATTGTAAACTGCTAAAACTTGGTATTTTGGTTAATTTAAAATTTGGACTGTTTTGAGAGTTGTA
131 TATTGTAAACTGCTAAAACTTGGTATTTTGGTTAATTTAAAATTTGGACTGTTTTGAGAGTTGTA
74369062 AATTTTAGGGACTCCCTGGACTGTTCGATTTTAACTTAATTTTGGATTTGAACATTCGTTATTTT
196 AATTTTAGGGACTCCCTGGACTGTTCGATTTTAACTTAATTTTGGATTTGAACATTCGTTATTTT
74369127 GCATGCTTGATAAATTGCTTACAGAAAAGGATTTTACACACAAACGAGATTTTCCTAAAATCTCA
261 GCATGCTTGATAAATTGCTTACAGAAAAGGATTTTACACACAAACGAGATTTTCCTAAAATCTCA
74369192 CGTTCATT
326 CGTTCATT
74369200 ATTTTTGCATGCTTAATTTTGTGGGGTTACACACTGAG-TTACACAAAATCACTCTTTTCTATTT
1 ATTTTTGCATGCTTAATTTTGTGGGGTTACACACTGAGCTTACACAAAATCACTCTTTTCTATTT
*
74369264 ATTCTGTACAGGCAATCCACAGAGTTAGGCGGATCGGTGTAACAGAGACTCAGGGGTGGCCACTT
66 ATTCTGTACAGGCAATCCACAGAGTTAGGCGGATCGGTGCAACAGAGACTCAGGGGTGGCCACTT
74369329 TATTGTAAACTGCTAAAACTTGGTATTTTGGTTAATTTAAAATTTGGACTGTTTTGAGAGTTGTA
131 TATTGTAAACTGCTAAAACTTGGTATTTTGGTTAATTTAAAATTTGGACTGTTTTGAGAGTTGTA
74369394 AATTTTAGGGACTCCCTGGACTGTTCGATTTTAACTTAATTTTGGATTTGAACATTCGTTATTTT
196 AATTTTAGGGACTCCCTGGACTGTTCGATTTTAACTTAATTTTGGATTTGAACATTCGTTATTTT
74369459 GCATGCTTGATAAATTGCTTACAGAAAAGGATTTTACACACAAACGAGATTTTCCTAAAATCTCA
261 GCATGCTTGATAAATTGCTTACAGAAAAGGATTTTACACACAAACGAGATTTTCCTAAAATCTCA
74369524 CGTTCATT
326 CGTTCATT
74369532 ATTTTTGCATGCTTAATTTTGTGGGGTTACACACTGAGCTTACACAAAATCACTCTTTTCTATTT
1 ATTTTTGCATGCTTAATTTTGTGGGGTTACACACTGAGCTTACACAAAATCACTCTTTTCTATTT
* * *
74369597 ATTCTGTACAGGCAATCCACAGAGTTAGGCAGATCGGTGCAGCAGAGACTTAGGGGTGGCCACTT
66 ATTCTGTACAGGCAATCCACAGAGTTAGGCGGATCGGTGCAACAGAGACTCAGGGGTGGCCACTT
74369662 TATTGTAAACTGCTAAAACTTGGTATTTTGGTTAATTTAAAATTTGGACTGTTTTGAGAGTTGTA
131 TATTGTAAACTGCTAAAACTTGGTATTTTGGTTAATTTAAAATTTGGACTGTTTTGAGAGTTGTA
74369727 AATTTTAGGGACTCCCTGGACTGTTCGATTTTAACTTAATTTTGGATTTGAACATTCGTTATTTT
196 AATTTTAGGGACTCCCTGGACTGTTCGATTTTAACTTAATTTTGGATTTGAACATTCGTTATTTT
74369792 GCATGCTTGATAAATTGCTTACAGAAAAGGATTTTACACACAAACGAGATTTTCCTAAAATCTCA
261 GCATGCTTGATAAATTGCTTACAGAAAAGGATTTTACACACAAACGAGATTTTCCTAAAATCTCA
74369857 CGTTCATT
326 CGTTCATT
74369865 ATTTTTGCATGCTTAATTTTGTGGGGTTACACACTGAGCTTACACAAAATCACTCTTTTCTATTT
1 ATTTTTGCATGCTTAATTTTGTGGGGTTACACACTGAGCTTACACAAAATCACTCTTTTCTATTT
*
74369930 ATTCTGTACAGGCAATCCACAGAGTTAGGCGGATCGGTGCAGCAGAGACTCAGGGGTGGCCACTT
66 ATTCTGTACAGGCAATCCACAGAGTTAGGCGGATCGGTGCAACAGAGACTCAGGGGTGGCCACTT
*
74369995 TATTGTAAACTACTAAAACTTGGTATTTTGGTTAATTTAAAATTTGGACTGTTTTGAGAGTTGTA
131 TATTGTAAACTGCTAAAACTTGGTATTTTGGTTAATTTAAAATTTGGACTGTTTTGAGAGTTGTA
74370060 AATTTTAGGGACTCCCTGGACTGTTCGATTTTAACTTAATTTTGGATTTGAACATTCGTTATTTT
196 AATTTTAGGGACTCCCTGGACTGTTCGATTTTAACTTAATTTTGGATTTGAACATTCGTTATTTT
*
74370125 GCATGCTTGATAAATTGCTTACAGAAAAGGATTTTACATACAAACGAGATTTTCCTAAAATCTCA
261 GCATGCTTGATAAATTGCTTACAGAAAAGGATTTTACACACAAACGAGATTTTCCTAAAATCTCA
74370190 AATCGGGTTT
Statistics
Matches: 981, Mismatches: 8, Indels: 2
0.99 0.01 0.00
Matches are distributed among these distances:
332 332 0.34
333 649 0.66
ACGTcount: A:0.28, C:0.16, G:0.19, T:0.37
Consensus pattern (333 bp):
ATTTTTGCATGCTTAATTTTGTGGGGTTACACACTGAGCTTACACAAAATCACTCTTTTCTATTT
ATTCTGTACAGGCAATCCACAGAGTTAGGCGGATCGGTGCAACAGAGACTCAGGGGTGGCCACTT
TATTGTAAACTGCTAAAACTTGGTATTTTGGTTAATTTAAAATTTGGACTGTTTTGAGAGTTGTA
AATTTTAGGGACTCCCTGGACTGTTCGATTTTAACTTAATTTTGGATTTGAACATTCGTTATTTT
GCATGCTTGATAAATTGCTTACAGAAAAGGATTTTACACACAAACGAGATTTTCCTAAAATCTCA
CGTTCATT
Found at i:74370562 original size:267 final size:267
Alignment explanation
Indices: 74370087--74370616 Score: 1051
Period size: 267 Copynumber: 2.0 Consensus size: 267
74370077 GGACTGTTCG
74370087 ATTTTAACTTAATTTTGGATTTGAACATTCGTTATTTTGCATGCTTGATAAATTGCTTACAGAAA
1 ATTTTAACTTAATTTTGGATTTGAACATTCGTTATTTTGCATGCTTGATAAATTGCTTACAGAAA
74370152 AGGATTTTACATACAAACGAGATTTTCCTAAAATCTCAAATCGGGTTTAAAAATATTGGTTTGAT
66 AGGATTTTACATACAAACGAGATTTTCCTAAAATCTCAAATCGGGTTTAAAAATATTGGTTTGAT
74370217 AAACTTCCGCTGTATTAAGTTTTGATGAAAGAACTAATTAAATGGCGTTTTTGATTAAACTTGGA
131 AAACTTCCGCTGTATTAAGTTTTGATGAAAGAACTAATTAAATGGCGTTTTTGATTAAACTTGGA
74370282 AATTATAAAATCGAAATGCTATGACATGACAACTTCGTTCTTAAAACCCATTTCGTGTAACATCT
196 AATTATAAAATCGAAATGCTATGACATGACAACTTCGTTCTTAAAACCCATTTCGTGTAACATCT
74370347 CCATTCA
261 CCATTCA
*
74370354 ATTTTAACTTAATTTTGGATTTGAACGTTCGTTATTTTGCATGCTTGATAAATTGCTTACAGAAA
1 ATTTTAACTTAATTTTGGATTTGAACATTCGTTATTTTGCATGCTTGATAAATTGCTTACAGAAA
74370419 AGGATTTTACATACAAACGAGATTTTCCTAAAATCTCAAATCGGGTTTAAAAATATTGGTTTGAT
66 AGGATTTTACATACAAACGAGATTTTCCTAAAATCTCAAATCGGGTTTAAAAATATTGGTTTGAT
74370484 AAACTTCCGCTGTATTAAGTTTTGATGAAAGAACTAATTAAATGGCGTTTTTGATTAAACTTGGA
131 AAACTTCCGCTGTATTAAGTTTTGATGAAAGAACTAATTAAATGGCGTTTTTGATTAAACTTGGA
74370549 AATTATAAAATCGAAATGCTATGACATGACAACTTCGTTCTTAAAACCCATTTCGTGTAACATCT
196 AATTATAAAATCGAAATGCTATGACATGACAACTTCGTTCTTAAAACCCATTTCGTGTAACATCT
74370614 CCA
261 CCA
74370617 GATTCGACCA
Statistics
Matches: 262, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
267 262 1.00
ACGTcount: A:0.34, C:0.14, G:0.15, T:0.37
Consensus pattern (267 bp):
ATTTTAACTTAATTTTGGATTTGAACATTCGTTATTTTGCATGCTTGATAAATTGCTTACAGAAA
AGGATTTTACATACAAACGAGATTTTCCTAAAATCTCAAATCGGGTTTAAAAATATTGGTTTGAT
AAACTTCCGCTGTATTAAGTTTTGATGAAAGAACTAATTAAATGGCGTTTTTGATTAAACTTGGA
AATTATAAAATCGAAATGCTATGACATGACAACTTCGTTCTTAAAACCCATTTCGTGTAACATCT
CCATTCA
Found at i:74372304 original size:16 final size:16
Alignment explanation
Indices: 74372277--74372319 Score: 61
Period size: 15 Copynumber: 2.7 Consensus size: 16
74372267 TTGGTCGAAA
74372277 AATTTTAATTTTTATGG
1 AATTTT-ATTTTTATGG
*
74372294 AA-TTTATTTTTATGT
1 AATTTTATTTTTATGG
74372309 AATTTTATTTT
1 AATTTTATTTT
74372320 ATTTTTGTTT
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
15 11 0.46
16 11 0.46
17 2 0.08
ACGTcount: A:0.28, C:0.00, G:0.07, T:0.65
Consensus pattern (16 bp):
AATTTTATTTTTATGG
Found at i:74373653 original size:13 final size:12
Alignment explanation
Indices: 74373621--74373654 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
74373611 GACAAGGAAA
74373621 GGAAAAACCAAG
1 GGAAAAACCAAG
*
74373633 GCAAAAACCAAG
1 GGAAAAACCAAG
74373645 GGAACAAACC
1 GGAA-AAACC
74373655 TGGCTACAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
12 14 0.74
13 5 0.26
ACGTcount: A:0.56, C:0.24, G:0.21, T:0.00
Consensus pattern (12 bp):
GGAAAAACCAAG
Found at i:74380355 original size:11 final size:11
Alignment explanation
Indices: 74380339--74380364 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
74380329 TAGAAATGAT
74380339 TTGGGACTAAA
1 TTGGGACTAAA
74380350 TTGGGACTAAA
1 TTGGGACTAAA
74380361 TTGG
1 TTGG
74380365 AAACATTGGA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.31, C:0.08, G:0.31, T:0.31
Consensus pattern (11 bp):
TTGGGACTAAA
Found at i:74381534 original size:47 final size:45
Alignment explanation
Indices: 74381413--74381574 Score: 254
Period size: 45 Copynumber: 3.6 Consensus size: 45
74381403 TGTACAGTAC
* *
74381413 TATTCGGGCCTTTGAGCCTAGCAGGCTATAATACCGGTGAGATAC
1 TATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGATAT
** *
74381458 TATTCGGAACTTTGAGCCTAGCAGGCTATAATGCTGGTGAGATAT
1 TATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGATAT
74381503 TATTCGGGCCTTTTTGAGCCTAGCAGGCTATAATGCCGGTGAGATAT
1 TATTCGGGCC--TTTGAGCCTAGCAGGCTATAATGCCGGTGAGATAT
74381550 TATTCGGGCC-TTGAGCCTAGCAGGC
1 TATTCGGGCCTTTGAGCCTAGCAGGC
74381575 GAAATGTCAG
Statistics
Matches: 107, Mismatches: 8, Indels: 5
0.89 0.07 0.04
Matches are distributed among these distances:
44 15 0.14
45 48 0.45
47 44 0.41
ACGTcount: A:0.23, C:0.20, G:0.28, T:0.29
Consensus pattern (45 bp):
TATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGATAT
Found at i:74383400 original size:55 final size:54
Alignment explanation
Indices: 74383313--74383572 Score: 224
Period size: 55 Copynumber: 4.8 Consensus size: 54
74383303 ATTAGGGTTT
* *
74383313 AAGGATACCATGTAAGACCATGCCAGGGCATGGAAATTGGTAAGGTTTC-TAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGG-AATTGGTAA-GTTTCATAAGGC
* * * * * *
74383368 AAGGATACCATGTAAGATCATGTCAAGACATGGCATTGATAAGTTACTATAAGAC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGAATTGGTAAGTTTC-ATAAGGC
* * * * *
74383423 AAAGG-TCCCATGTAAGACCATGCTAAGGCATGGCATTGGTGAG-TTCATAAGGC
1 -AAGGATACCATGTAAGACCATGCCAAGACATGGAATTGGTAAGTTTCATAAGGC
** *
74383476 AAGGATACCATGTAAGACCATGCCGGGACATGGCAA-TGGTAAGTTTCAAAAGG-
1 AAGGATACCATGTAAGACCATGCCAAGACATGG-AATTGGTAAGTTTCATAAGGC
** ** * * *
74383529 ATACCATACCACATAAGACCATGACAAGTCATGGAAATGGTAAG
1 A-AGGATACCATGTAAGACCATGCCAAGACATGGAATTGGTAAG
74383573 GTACCCGTGT
Statistics
Matches: 164, Mismatches: 33, Indels: 17
0.77 0.15 0.08
Matches are distributed among these distances:
52 4 0.02
53 42 0.26
54 49 0.30
55 65 0.40
56 4 0.02
ACGTcount: A:0.36, C:0.17, G:0.25, T:0.22
Consensus pattern (54 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGAATTGGTAAGTTTCATAAGGC
Found at i:74383519 original size:108 final size:110
Alignment explanation
Indices: 74383320--74383520 Score: 282
Period size: 108 Copynumber: 1.8 Consensus size: 110
74383310 TTTAAGGATA
*
74383320 CCATGTAAGACCATGCCAGGGCATGGAAATTGGTAAGGTTTCTAAGGCAAGGATACCATGTAAGA
1 CCATGTAAGACCATGCCAAGGCATGGAAATTGGTAAGGTTTCTAAGGCAAGGATACCATGTAAGA
* * *
74383385 TCATGTCAAGACATGGCATTGATAAGTTACTATAAGACAAAGGTC
66 CCATGCCAAGACATGGCAATGATAAGTTACTATAAGACAAAGGTC
* * *
74383430 CCATGTAAGACCATGCTAAGGCATGG-CATTGGTGA-G-TTCATAAGGCAAGGATACCATGTAAG
1 CCATGTAAGACCATGCCAAGGCATGGAAATTGGTAAGGTTTC-TAAGGCAAGGATACCATGTAAG
** *
74383492 ACCATGCCGGGACATGGCAATGGTAAGTT
65 ACCATGCCAAGACATGGCAATGATAAGTT
74383521 TCAAAAGGAT
Statistics
Matches: 80, Mismatches: 10, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
107 3 0.04
108 46 0.57
109 7 0.09
110 24 0.30
ACGTcount: A:0.33, C:0.17, G:0.26, T:0.23
Consensus pattern (110 bp):
CCATGTAAGACCATGCCAAGGCATGGAAATTGGTAAGGTTTCTAAGGCAAGGATACCATGTAAGA
CCATGCCAAGACATGGCAATGATAAGTTACTATAAGACAAAGGTC
Found at i:74389431 original size:85 final size:85
Alignment explanation
Indices: 74389328--74389632 Score: 610
Period size: 85 Copynumber: 3.6 Consensus size: 85
74389318 CAAAGTATTT
74389328 TTGAAAGTATCCCCATGGAAGAAAGTTCTTAGATTTGGAAAGAAAGGTAAACTAAGTCCACATTT
1 TTGAAAGTATCCCCATGGAAGAAAGTTCTTAGATTTGGAAAGAAAGGTAAACTAAGTCCACATTT
74389393 TATTGGACCGTTTGAAGTGA
66 TATTGGACCGTTTGAAGTGA
74389413 TTGAAAGTATCCCCATGGAAGAAAGTTCTTAGATTTGGAAAGAAAGGTAAACTAAGTCCACATTT
1 TTGAAAGTATCCCCATGGAAGAAAGTTCTTAGATTTGGAAAGAAAGGTAAACTAAGTCCACATTT
74389478 TATTGGACCGTTTGAAGTGA
66 TATTGGACCGTTTGAAGTGA
74389498 TTGAAAGTATCCCCATGGAAGAAAGTTCTTAGATTTGGAAAGAAAGGTAAACTAAGTCCACATTT
1 TTGAAAGTATCCCCATGGAAGAAAGTTCTTAGATTTGGAAAGAAAGGTAAACTAAGTCCACATTT
74389563 TATTGGACCGTTTGAAGTGA
66 TATTGGACCGTTTGAAGTGA
74389583 TTGAAAGTATCCCCATGGAAGAAAGTTCTTAGATTTGGAAAGAAAGGTAA
1 TTGAAAGTATCCCCATGGAAGAAAGTTCTTAGATTTGGAAAGAAAGGTAA
74389633 GCTTTGTCGA
Statistics
Matches: 220, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
85 220 1.00
ACGTcount: A:0.36, C:0.12, G:0.23, T:0.29
Consensus pattern (85 bp):
TTGAAAGTATCCCCATGGAAGAAAGTTCTTAGATTTGGAAAGAAAGGTAAACTAAGTCCACATTT
TATTGGACCGTTTGAAGTGA
Found at i:74391241 original size:55 final size:53
Alignment explanation
Indices: 74391160--74391404 Score: 232
Period size: 55 Copynumber: 4.6 Consensus size: 53
74391150 ATTAAGGTTT
* *
74391160 AAGGATACCATGTAAGACCATATCAAGGCATGGCAATTGGTAAGGTTTCTAAGGC
1 AAGGATACCATGTAAGACCATGTCAAGACATGGC-ATTGGTAA-GTTTCTAAGGC
* * * * *
74391215 AAGGATACCACGTAAGACCATGTCAAGACATGACATTGATAAGTTACTATAAGAC
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGGTAAGTT--TCTAAGGC
* * * * *
74391270 AAAGG-TCCCATGTAAAACCATGTCAAGGCATGGCATTAGTGAG-TTCATAAGGC
1 -AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGGTAAGTTTC-TAAGGC
* * *
74391323 AAGGATACCATGTAAGACCATGTCGAGACATGACAATGGTAAGTTTC-AA---
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGGTAAGTTTCTAAGGC
* * *
74391372 AAGGATACCACGTAAGACCATGACAAGTCATGG
1 AAGGATACCATGTAAGACCATGTCAAGACATGG
74391405 TAACGGTAAG
Statistics
Matches: 154, Mismatches: 30, Indels: 18
0.76 0.15 0.09
Matches are distributed among these distances:
49 28 0.18
52 7 0.05
53 38 0.25
54 11 0.07
55 66 0.43
56 4 0.03
ACGTcount: A:0.38, C:0.18, G:0.23, T:0.22
Consensus pattern (53 bp):
AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGGTAAGTTTCTAAGGC
Found at i:74391366 original size:108 final size:110
Alignment explanation
Indices: 74391167--74391367 Score: 300
Period size: 108 Copynumber: 1.8 Consensus size: 110
74391157 TTTAAGGATA
* *
74391167 CCATGTAAGACCATATCAAGGCATGGCAATTGGTAAGGTTTCTAAGGCAAGGATACCACGTAAGA
1 CCATGTAAAACCATATCAAGGCATGGCAATTAGTAAGGTTTCTAAGGCAAGGATACCACGTAAGA
*
74391232 CCATGTCAAGACATGACATTGATAAGTTACTATAAGACAAAGGTC
66 CCATGTCAAGACATGACAATGATAAGTTACTATAAGACAAAGGTC
* * *
74391277 CCATGTAAAACCATGTCAAGGCATGGC-ATTAGTGA-G-TTCATAAGGCAAGGATACCATGTAAG
1 CCATGTAAAACCATATCAAGGCATGGCAATTAGTAAGGTTTC-TAAGGCAAGGATACCACGTAAG
* *
74391339 ACCATGTCGAGACATGACAATGGTAAGTT
65 ACCATGTCAAGACATGACAATGATAAGTT
74391368 TCAAAAGGAT
Statistics
Matches: 82, Mismatches: 8, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
107 3 0.04
108 48 0.59
109 6 0.07
110 25 0.30
ACGTcount: A:0.36, C:0.18, G:0.23, T:0.23
Consensus pattern (110 bp):
CCATGTAAAACCATATCAAGGCATGGCAATTAGTAAGGTTTCTAAGGCAAGGATACCACGTAAGA
CCATGTCAAGACATGACAATGATAAGTTACTATAAGACAAAGGTC
Found at i:74393808 original size:8 final size:8
Alignment explanation
Indices: 74393792--74393821 Score: 51
Period size: 8 Copynumber: 3.8 Consensus size: 8
74393782 TTAATTAATG
*
74393792 TAATGTAA
1 TAATATAA
74393800 TAATATAA
1 TAATATAA
74393808 TAATATAA
1 TAATATAA
74393816 TAATAT
1 TAATAT
74393822 TTACTTATAT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
8 21 1.00
ACGTcount: A:0.57, C:0.00, G:0.03, T:0.40
Consensus pattern (8 bp):
TAATATAA
Found at i:74401919 original size:32 final size:32
Alignment explanation
Indices: 74401873--74401939 Score: 98
Period size: 32 Copynumber: 2.1 Consensus size: 32
74401863 CATGTGGCCC
* * *
74401873 ACACGGCCCAATAGGTTGAGCCCGTGTGTCAT
1 ACACAGCCCAATAGGTCGAGCCCATGTGTCAT
*
74401905 ACACAGCCCAATAGGTCGAGCCCATGTGTCGT
1 ACACAGCCCAATAGGTCGAGCCCATGTGTCAT
74401937 ACA
1 ACA
74401940 TGGCCTTACC
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
32 31 1.00
ACGTcount: A:0.25, C:0.30, G:0.25, T:0.19
Consensus pattern (32 bp):
ACACAGCCCAATAGGTCGAGCCCATGTGTCAT
Found at i:74412767 original size:50 final size:49
Alignment explanation
Indices: 74412689--74412787 Score: 137
Period size: 50 Copynumber: 2.0 Consensus size: 49
74412679 ACAAATGCAT
* *
74412689 ATGAGAATTCACGCTTATACAAAGAAGCAACAAAACACCGCCACGACGC
1 ATGAGAATTCACACCTATACAAAGAAGCAACAAAACACCGCCACGACGC
* *
74412738 NATGAGAATTCACACCTATAC-AAGAAAGCAACAAATCACCGTCACGACGC
1 -ATGAGAATTCACACCTATACAAAG-AAGCAACAAAACACCGCCACGACGC
74412788 TCGTTTAAAA
Statistics
Matches: 44, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
49 3 0.07
50 41 0.93
ACGTcount: A:0.42, C:0.28, G:0.15, T:0.13
Consensus pattern (49 bp):
ATGAGAATTCACACCTATACAAAGAAGCAACAAAACACCGCCACGACGC
Found at i:74415162 original size:27 final size:27
Alignment explanation
Indices: 74415132--74415188 Score: 105
Period size: 27 Copynumber: 2.1 Consensus size: 27
74415122 ATTCTCAATG
*
74415132 TATGTTTACTTATGGTTTATTTTGAGA
1 TATGATTACTTATGGTTTATTTTGAGA
74415159 TATGATTACTTATGGTTTATTTTGAGA
1 TATGATTACTTATGGTTTATTTTGAGA
74415186 TAT
1 TAT
74415189 TATTGATAGG
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.25, C:0.04, G:0.18, T:0.54
Consensus pattern (27 bp):
TATGATTACTTATGGTTTATTTTGAGA
Found at i:74423564 original size:17 final size:17
Alignment explanation
Indices: 74423542--74423579 Score: 67
Period size: 17 Copynumber: 2.2 Consensus size: 17
74423532 CTTTATTACA
74423542 TTTTTAAGATTCATTCG
1 TTTTTAAGATTCATTCG
*
74423559 TTTTTAAGATTCATTTG
1 TTTTTAAGATTCATTCG
74423576 TTTT
1 TTTT
74423580 CCTTTTCAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.21, C:0.08, G:0.11, T:0.61
Consensus pattern (17 bp):
TTTTTAAGATTCATTCG
Found at i:74424387 original size:74 final size:74
Alignment explanation
Indices: 74424263--74424404 Score: 230
Period size: 74 Copynumber: 1.9 Consensus size: 74
74424253 AAGCCTACCT
* *
74424263 CCACGATTAACCCCTAGTAAACTCCCTTGAGCCTAACAAGACATTTCTTGTATTACCCTTAATAT
1 CCACGATTAACCCCTAGTAAACTCCCTTGACCCTAACAAGACATTCCTTGTATTACCCTTAATAT
74424328 TAAACTTCC
66 TAAACTTCC
* * * *
74424337 CCACGATTACCCCCTAGTAACCTCCCTTGACCCTAACAAGCCATTCCTTGTATTACCCTTTATAT
1 CCACGATTAACCCCTAGTAAACTCCCTTGACCCTAACAAGACATTCCTTGTATTACCCTTAATAT
74424402 TAA
66 TAA
74424405 CCATTGACCC
Statistics
Matches: 62, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
74 62 1.00
ACGTcount: A:0.29, C:0.32, G:0.08, T:0.31
Consensus pattern (74 bp):
CCACGATTAACCCCTAGTAAACTCCCTTGACCCTAACAAGACATTCCTTGTATTACCCTTAATAT
TAAACTTCC
Found at i:74424539 original size:6 final size:7
Alignment explanation
Indices: 74424522--74424547 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
74424512 TGTTCTTAAC
74424522 AAAAAAT
1 AAAAAAT
74424529 AAAAAAT
1 AAAAAAT
74424536 AAAAAAT
1 AAAAAAT
74424543 AAAAA
1 AAAAA
74424548 CTATGTATAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.88, C:0.00, G:0.00, T:0.12
Consensus pattern (7 bp):
AAAAAAT
Found at i:74425788 original size:14 final size:13
Alignment explanation
Indices: 74425768--74425799 Score: 55
Period size: 14 Copynumber: 2.4 Consensus size: 13
74425758 AATATTTAAC
74425768 TTGTTCTTAATTA
1 TTGTTCTTAATTA
74425781 TGTGTTCTTAATTA
1 T-TGTTCTTAATTA
74425795 TTGTT
1 TTGTT
74425800 TTGATATCCC
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 5 0.28
14 13 0.72
ACGTcount: A:0.19, C:0.06, G:0.12, T:0.62
Consensus pattern (13 bp):
TTGTTCTTAATTA
Found at i:74435229 original size:48 final size:47
Alignment explanation
Indices: 74435165--74435484 Score: 410
Period size: 48 Copynumber: 6.7 Consensus size: 47
74435155 TAGGAGTTAT
* *
74435165 ATTGATTTGGCTTCGGGCCATAATATTAGCACTTCATGTGCGAGTTC
1 ATTGATTTGGCTTCGGGCCATGATATTAGCACTTCAGGTGCGAGTTC
**
74435212 TATTGATTTGGCTTCGGGCCATGATATTAGTGCTTCAGGTGCGAGTTAC
1 -ATTGATTTGGCTTCGGGCCATGATATTAGCACTTCAGGTGCGAGTT-C
** * *
74435261 ATTGATTTGGCTAAGGGCCATGATATTAGCACTTCGGGTGTGAGTTAC
1 ATTGATTTGGCTTCGGGCCATGATATTAGCACTTCAGGTGCGAGTT-C
* * * **
74435309 ATTGATTTGACTTCGGGCAATGATATTGGCACTTC-GAGTATGAGCTTC
1 ATTGATTTGGCTTCGGGCCATGATATTAGCACTTCAG-GTGCGAG-TTC
* * *
74435357 ATTGATTTGGCTTCGGGTCATGATATTGGCACTTCGGGTGCGAGCTTC
1 ATTGATTTGGCTTCGGGCCATGATATTAGCACTTCAGGTGCGAG-TTC
74435405 ATTGATTTGGCTTCGGGCCATGATATTAGCACTTCAGGTGC-AGGCTTC
1 ATTGATTTGGCTTCGGGCCATGATATTAGCACTTCAGGTGCGA-G-TTC
74435453 ATTGATTTGGCTTCGGGCCATGATATTAGCAC
1 ATTGATTTGGCTTCGGGCCATGATATTAGCAC
74435485 CTAGGGTGCG
Statistics
Matches: 243, Mismatches: 24, Indels: 10
0.88 0.09 0.04
Matches are distributed among these distances:
47 2 0.01
48 237 0.98
49 4 0.02
ACGTcount: A:0.20, C:0.18, G:0.27, T:0.35
Consensus pattern (47 bp):
ATTGATTTGGCTTCGGGCCATGATATTAGCACTTCAGGTGCGAGTTC
Found at i:74441112 original size:25 final size:26
Alignment explanation
Indices: 74441084--74441134 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
74441074 CTTATTTCAT
*
74441084 TAAATAAAAAAT-TTTAAAAATATAA
1 TAAATAAAAAATGTTTAAAAACATAA
* *
74441109 TAAATCAAATATGTTTAAAAACATAA
1 TAAATAAAAAATGTTTAAAAACATAA
74441135 AAACAAATAT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
25 10 0.45
26 12 0.55
ACGTcount: A:0.63, C:0.04, G:0.02, T:0.31
Consensus pattern (26 bp):
TAAATAAAAAATGTTTAAAAACATAA
Found at i:74441126 original size:26 final size:24
Alignment explanation
Indices: 74441096--74441144 Score: 71
Period size: 26 Copynumber: 2.0 Consensus size: 24
74441086 AATAAAAAAT
*
74441096 TTTAAAAATATAATAAATCAAATATG
1 TTTAAAAACATAA-AAA-CAAATATG
74441122 TTTAAAAACATAAAAACAAATAT
1 TTTAAAAACATAAAAACAAATAT
74441145 TAAAACAAAT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 7 0.32
25 3 0.14
26 12 0.55
ACGTcount: A:0.61, C:0.06, G:0.02, T:0.31
Consensus pattern (24 bp):
TTTAAAAACATAAAAACAAATATG
Found at i:74441386 original size:71 final size:72
Alignment explanation
Indices: 74441248--74441390 Score: 245
Period size: 72 Copynumber: 2.0 Consensus size: 72
74441238 TTAAAAATAA
*
74441248 AATAAAAAATATATTAATATATAATTCGGGCCGAGCTGTGTCAGGCCCGGGGCCAAAAAACTCTT
1 AATAAAAAATATATTAATATATAATTCGGGCCGAGCAGTGTCAGGCCCGGGGCCAAAAAACTCTT
74441313 ACCCAAG
66 ACCCAAG
*
74441320 AATAAAAAATATATTAATATATAATTCGGGCCGGGCCAG-GTCAGGCCC-GGGCCAAAAAACTCT
1 AATAAAAAATATATTAATATATAATTCGGGCCGAG-CAGTGTCAGGCCCGGGGCCAAAAAACTCT
74441383 TACCCAAG
65 TACCCAAG
74441391 GCCGGCCCAT
Statistics
Matches: 68, Mismatches: 2, Indels: 3
0.93 0.03 0.04
Matches are distributed among these distances:
71 23 0.34
72 43 0.63
73 2 0.03
ACGTcount: A:0.38, C:0.22, G:0.20, T:0.21
Consensus pattern (72 bp):
AATAAAAAATATATTAATATATAATTCGGGCCGAGCAGTGTCAGGCCCGGGGCCAAAAAACTCTT
ACCCAAG
Found at i:74445206 original size:30 final size:31
Alignment explanation
Indices: 74445150--74445211 Score: 74
Period size: 30 Copynumber: 2.0 Consensus size: 31
74445140 ATTTCTTTTC
*
74445150 AAATAAATATAATAATATACTATTAA-TAAT
1 AAATAAAAATAATAATATACTATTAATTAAT
* *
74445180 AAATAAAAATAATTATA-ATTATTTAATTAAT
1 AAATAAAAATAATAATATACTA-TTAATTAAT
74445211 A
1 A
74445212 GTGTTTTATA
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
29 3 0.11
30 19 0.70
31 5 0.19
ACGTcount: A:0.60, C:0.02, G:0.00, T:0.39
Consensus pattern (31 bp):
AAATAAAAATAATAATATACTATTAATTAAT
Found at i:74449248 original size:45 final size:45
Alignment explanation
Indices: 74449184--74449273 Score: 171
Period size: 45 Copynumber: 2.0 Consensus size: 45
74449174 CAGCAAAACT
74449184 TTCTGAACGGATGCATCCGTATACAAGCGCACCCAGTTACCATCA
1 TTCTGAACGGATGCATCCGTATACAAGCGCACCCAGTTACCATCA
*
74449229 TTCTGAACGGATGCATCCGTATACAAGCGCACCCAGTTATCATCA
1 TTCTGAACGGATGCATCCGTATACAAGCGCACCCAGTTACCATCA
74449274 ACATGCAACC
Statistics
Matches: 44, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
45 44 1.00
ACGTcount: A:0.29, C:0.30, G:0.18, T:0.23
Consensus pattern (45 bp):
TTCTGAACGGATGCATCCGTATACAAGCGCACCCAGTTACCATCA
Found at i:74454237 original size:67 final size:68
Alignment explanation
Indices: 74454076--74454272 Score: 387
Period size: 68 Copynumber: 2.9 Consensus size: 68
74454066 TTAAATTAAG
74454076 GAATTGTATATTAATTTTTAAC-TTTTTTTTGTAAAGAAATAAATCCAATCATATATATTATAGA
1 GAATTGTATATTAATTTTTAACTTTTTTTTTGTAAAGAAATAAATCCAATCATATATATTATAGA
74454140 TTA
66 TTA
74454143 GAATTGTATATTAATTTTTAACTTTTTTTTTGTAAAGAAATAAATCCAATCATATATATTATAGA
1 GAATTGTATATTAATTTTTAACTTTTTTTTTGTAAAGAAATAAATCCAATCATATATATTATAGA
74454208 TTA
66 TTA
74454211 GAATTGTATATTAATTTTTAACTTTTTTTTTGTAAAGAAATAAATCCAATCATATATATTAT
1 GAATTGTATATTAATTTTTAACTTTTTTTTTGTAAAGAAATAAATCCAATCATATATATTAT
74454273 TTATTACAAT
Statistics
Matches: 129, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
67 22 0.17
68 107 0.83
ACGTcount: A:0.40, C:0.06, G:0.07, T:0.47
Consensus pattern (68 bp):
GAATTGTATATTAATTTTTAACTTTTTTTTTGTAAAGAAATAAATCCAATCATATATATTATAGA
TTA
Found at i:74454546 original size:21 final size:23
Alignment explanation
Indices: 74454522--74454568 Score: 62
Period size: 21 Copynumber: 2.1 Consensus size: 23
74454512 GTTATTTAAA
* *
74454522 AATTAATTTTTTATAA-AT-TTT
1 AATTAAATTTATATAATATATTT
74454543 AATTAAATTTATATAATATATTT
1 AATTAAATTTATATAATATATTT
74454566 AAT
1 AAT
74454569 ACACTTTACT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
21 14 0.64
22 2 0.09
23 6 0.27
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (23 bp):
AATTAAATTTATATAATATATTT
Found at i:74455618 original size:21 final size:21
Alignment explanation
Indices: 74455594--74455638 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
74455584 TTTTGCTCTA
74455594 CTCTG-CTGCCATCGATGCTGC
1 CTCTGTCT-CCATCGATGCTGC
* *
74455615 CTCTGTCTCCCTCGCTGCTGC
1 CTCTGTCTCCATCGATGCTGC
74455636 CTC
1 CTC
74455639 CGCTCTAAGT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
21 19 0.90
22 2 0.10
ACGTcount: A:0.04, C:0.44, G:0.20, T:0.31
Consensus pattern (21 bp):
CTCTGTCTCCATCGATGCTGC
Found at i:74456073 original size:13 final size:14
Alignment explanation
Indices: 74456048--74456076 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
74456038 TGATGAATTG
74456048 AATTAAACAATTAT
1 AATTAAACAATTAT
74456062 AATTAAAC-ATTAT
1 AATTAAACAATTAT
74456075 AA
1 AA
74456077 ATATTTAGAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 7 0.47
14 8 0.53
ACGTcount: A:0.59, C:0.07, G:0.00, T:0.34
Consensus pattern (14 bp):
AATTAAACAATTAT
Found at i:74461180 original size:18 final size:18
Alignment explanation
Indices: 74461157--74461479 Score: 230
Period size: 18 Copynumber: 17.5 Consensus size: 18
74461147 ATATTTATGT
74461157 ATTATGTAAGTTATGTAA
1 ATTATGTAAGTTATGTAA
**
74461175 ATTATGTAAGTTATCCAA
1 ATTATGTAAGTTATGTAA
* *
74461193 ATTATGTAAATTATTTAA
1 ATTATGTAAGTTATGTAA
* *
74461211 GATGTGATATATATTTATGT--
1 -AT-T-ATGTA-AGTTATGTAA
74461231 ATTATGTAAGTTATGTAA
1 ATTATGTAAGTTATGTAA
**
74461249 ATTATGTAAGTTATCCAA
1 ATTATGTAAGTTATGTAA
* *
74461267 ATTATGTAAATTATTTAA
1 ATTATGTAAGTTATGTAA
* *
74461285 GATGTGATATATATTTATGT--
1 -AT-T-ATGTA-AGTTATGTAA
74461305 ATTATGTAAGTTATGTAA
1 ATTATGTAAGTTATGTAA
**
74461323 ATTATGTAAGTTATCCAA
1 ATTATGTAAGTTATGTAA
* *
74461341 ATTATGTAAATTATTTAA
1 ATTATGTAAGTTATGTAA
* *
74461359 GATGTGATATATATTTATGT--
1 -AT-T-ATGTA-AGTTATGTAA
74461379 ATTATGTAAGTTATGTAA
1 ATTATGTAAGTTATGTAA
**
74461397 ATTATGTAAGTTATCCAA
1 ATTATGTAAGTTATGTAA
* *
74461415 ATTATGTAAATTATTTAA
1 ATTATGTAAGTTATGTAA
* *
74461433 GATGTGATATATATTTATGT--
1 -AT-T-ATGTA-AGTTATGTAA
74461453 ATTATGTAAGTTATGTAA
1 ATTATGTAAGTTATGTAA
74461471 ATTATGTAA
1 ATTATGTAA
74461480 AATATGATAT
Statistics
Matches: 241, Mismatches: 40, Indels: 48
0.73 0.12 0.15
Matches are distributed among these distances:
16 28 0.12
17 16 0.07
18 137 0.57
19 16 0.07
20 4 0.02
21 16 0.07
22 24 0.10
ACGTcount: A:0.38, C:0.02, G:0.14, T:0.46
Consensus pattern (18 bp):
ATTATGTAAGTTATGTAA
Found at i:74461221 original size:74 final size:74
Alignment explanation
Indices: 74461141--74461479 Score: 678
Period size: 74 Copynumber: 4.6 Consensus size: 74
74461131 AGTTTTGATA
74461141 TGATATATATTTATGTATTATGTAAGTTATGTAAATTATGTAAGTTATCCAAATTATGTAAATTA
1 TGATATATATTTATGTATTATGTAAGTTATGTAAATTATGTAAGTTATCCAAATTATGTAAATTA
74461206 TTTAAGATG
66 TTTAAGATG
74461215 TGATATATATTTATGTATTATGTAAGTTATGTAAATTATGTAAGTTATCCAAATTATGTAAATTA
1 TGATATATATTTATGTATTATGTAAGTTATGTAAATTATGTAAGTTATCCAAATTATGTAAATTA
74461280 TTTAAGATG
66 TTTAAGATG
74461289 TGATATATATTTATGTATTATGTAAGTTATGTAAATTATGTAAGTTATCCAAATTATGTAAATTA
1 TGATATATATTTATGTATTATGTAAGTTATGTAAATTATGTAAGTTATCCAAATTATGTAAATTA
74461354 TTTAAGATG
66 TTTAAGATG
74461363 TGATATATATTTATGTATTATGTAAGTTATGTAAATTATGTAAGTTATCCAAATTATGTAAATTA
1 TGATATATATTTATGTATTATGTAAGTTATGTAAATTATGTAAGTTATCCAAATTATGTAAATTA
74461428 TTTAAGATG
66 TTTAAGATG
74461437 TGATATATATTTATGTATTATGTAAGTTATGTAAATTATGTAA
1 TGATATATATTTATGTATTATGTAAGTTATGTAAATTATGTAA
74461480 AATATGATAT
Statistics
Matches: 265, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
74 265 1.00
ACGTcount: A:0.38, C:0.02, G:0.14, T:0.46
Consensus pattern (74 bp):
TGATATATATTTATGTATTATGTAAGTTATGTAAATTATGTAAGTTATCCAAATTATGTAAATTA
TTTAAGATG
Found at i:74461480 original size:56 final size:55
Alignment explanation
Indices: 74461175--74461480 Score: 177
Period size: 56 Copynumber: 5.5 Consensus size: 55
74461165 AGTTATGTAA
**
74461175 ATTATGTAAGTTATCCAAATTATGTAAATTATTTAAGATGTGATATATATTTATGT
1 ATTATGTAAGTTATGTAAATTATGTAAATTATTTAAGAT-TGATATATATTTATGT
* ** * *
74461231 ATTATGTAAGTTATGTAAATTATGTAAGTTATCCAA-ATT-ATGTAAATTATTTAAG-
1 ATTATGTAAGTTATGTAAATTATGTAAATTATTTAAGATTGA--TATA-TATTTATGT
* * * * * * **
74461286 ATGTGATATATATTTATGT--ATTATGTAAGTTATGTAA-ATT-ATGTA-AGTTATCCAA
1 AT-T-ATGTA-AGTTATGTAAATTATGTAAATTATTTAAGATTGATATATATTTAT--GT
* * * * * * *
74461341 ATTATGTAAATTAT-TTAA-GATGTGATATATATTTATGTATT-ATGTA-AGTTATGT
1 ATTATGTAAGTTATGTAAATTATGT-AAAT-TATTTAAG-ATTGATATATATTTATGT
**
74461395 AAATTATGTAAGTTATCCAAATTATGTAAATTATTTAAGATGTGATATATATTTATGT
1 --ATTATGTAAGTTATGTAAATTATGTAAATTATTTAAGAT-TGATATATATTTATGT
74461453 ATTATGTAAGTTATGTAAATTATGTAAA
1 ATTATGTAAGTTATGTAAATTATGTAAA
74461481 ATATGATATA
Statistics
Matches: 193, Mismatches: 35, Indels: 44
0.71 0.13 0.16
Matches are distributed among these distances:
51 1 0.01
52 13 0.07
53 8 0.04
54 9 0.05
55 11 0.06
56 120 0.62
57 13 0.07
58 18 0.09
ACGTcount: A:0.38, C:0.03, G:0.13, T:0.46
Consensus pattern (55 bp):
ATTATGTAAGTTATGTAAATTATGTAAATTATTTAAGATTGATATATATTTATGT
Found at i:74461690 original size:5 final size:5
Alignment explanation
Indices: 74461680--74461704 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
74461670 TTTTTGTGAT
74461680 TAAAA TAAAA TAAAA TAAAA TAAAA
1 TAAAA TAAAA TAAAA TAAAA TAAAA
74461705 CTTTAAATAC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.80, C:0.00, G:0.00, T:0.20
Consensus pattern (5 bp):
TAAAA
Found at i:74461787 original size:5 final size:5
Alignment explanation
Indices: 74461777--74461801 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
74461767 TTTTTGTGAT
74461777 TAAAA TAAAA TAAAA TAAAA TAAAA
1 TAAAA TAAAA TAAAA TAAAA TAAAA
74461802 CTTTAAATAC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.80, C:0.00, G:0.00, T:0.20
Consensus pattern (5 bp):
TAAAA
Found at i:74461881 original size:5 final size:5
Alignment explanation
Indices: 74461871--74461895 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
74461861 TTTTCCTGAT
74461871 TAAAA TAAAA TAAAA TAAAA TAAAA
1 TAAAA TAAAA TAAAA TAAAA TAAAA
74461896 CTTTAAATAC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.80, C:0.00, G:0.00, T:0.20
Consensus pattern (5 bp):
TAAAA
Found at i:74461951 original size:94 final size:94
Alignment explanation
Indices: 74461663--74461943 Score: 499
Period size: 97 Copynumber: 3.0 Consensus size: 94
74461653 TTAATTATTT
*
74461663 ACAAGTTTTTTTGTGATTAAAATAAAATAAAATAAAATAAAACTTTAAATACAATTTACTTTAAT
1 ACAAGTTTTTTTGTGATTAAAATAAAATAAAATAAAATAAAACTTTAAATACAATTTAATTTAAT
*
74461728 TAGGTAATTTAACAATAAAATAAAAGTAG
66 TAGGTAATTTAAAAATAAAATAAAAGTAG
74461757 ACAAAGGTTTTTTTTGTGATTAAAATAAAATAAAATAAAATAAAACTTTAAATACAATTTAATTT
1 AC-AA-G-TTTTTTTGTGATTAAAATAAAATAAAATAAAATAAAACTTTAAATACAATTTAATTT
74461822 AATTAGGTAATTTAAAAATAAAATAAAAGTAG
63 AATTAGGTAATTTAAAAATAAAATAAAAGTAG
**
74461854 ACAAGTTTTTTCCTGATTAAAATAAAATAAAATAAAATAAAACTTTAAATACAATTTAATTTAAT
1 ACAAGTTTTTTTGTGATTAAAATAAAATAAAATAAAATAAAACTTTAAATACAATTTAATTTAAT
74461919 TAGGTAATTTAAAAATAAAATAAAA
66 TAGGTAATTTAAAAATAAAATAAAA
74461944 TTTGACAAAA
Statistics
Matches: 180, Mismatches: 4, Indels: 6
0.95 0.02 0.03
Matches are distributed among these distances:
94 85 0.47
95 3 0.02
96 3 0.02
97 89 0.49
ACGTcount: A:0.54, C:0.05, G:0.07, T:0.35
Consensus pattern (94 bp):
ACAAGTTTTTTTGTGATTAAAATAAAATAAAATAAAATAAAACTTTAAATACAATTTAATTTAAT
TAGGTAATTTAAAAATAAAATAAAAGTAG
Found at i:74462037 original size:97 final size:98
Alignment explanation
Indices: 74461916--74462100 Score: 268
Period size: 99 Copynumber: 1.9 Consensus size: 98
74461906 AATTTAATTT
* **
74461916 AATTAGGTAATTTAAAAATAAAATAAAAT-TTGACA-AAAT-ATTTTAAACATTGTTAAGTCTTT
1 AATTAGGTAATATAAAAATAAAATAAAATATTGA-ATAAATGACATTAAAC-TTGTTAAGTCTTT
*
74461978 CTTTTAATTTGCATTTATTAATTTGTTAATTTAAA
64 CTTTCAATTTGCATTTATTAATTTGTTAATTTAAA
* *
74462013 AATTAGGTAATATAAAAATAAAATAAAATATTTAATTTAATGACATTAAACTTGTTAAGTCTTTC
1 AATTAGGTAATATAAAAATAAAATAAAATATTGAA-TAAATGACATTAAACTTGTTAAGTCTTTC
74462078 TTTCAATTTGCATTTATTAATTT
65 TTTCAATTTGCATTTATTAATTT
74462101 AAGTAAACAT
Statistics
Matches: 78, Mismatches: 6, Indels: 6
0.87 0.07 0.07
Matches are distributed among these distances:
97 29 0.37
98 3 0.04
99 39 0.50
100 7 0.09
ACGTcount: A:0.42, C:0.06, G:0.07, T:0.45
Consensus pattern (98 bp):
AATTAGGTAATATAAAAATAAAATAAAATATTGAATAAATGACATTAAACTTGTTAAGTCTTTCT
TTCAATTTGCATTTATTAATTTGTTAATTTAAA
Found at i:74462776 original size:8 final size:8
Alignment explanation
Indices: 74462763--74462817 Score: 58
Period size: 8 Copynumber: 7.0 Consensus size: 8
74462753 CAAAAAATTC
74462763 CACTATTA
1 CACTATTA
*
74462771 CACTATCA
1 CACTATTA
74462779 CACTA-TA
1 CACTATTA
* *
74462786 CGCAATTA
1 CACTATTA
*
74462794 CACTATTC
1 CACTATTA
*
74462802 CACTATTC
1 CACTATTA
74462810 CACTATTA
1 CACTATTA
74462818 TCATACTCAC
Statistics
Matches: 38, Mismatches: 8, Indels: 2
0.79 0.17 0.04
Matches are distributed among these distances:
7 4 0.11
8 34 0.89
ACGTcount: A:0.35, C:0.31, G:0.02, T:0.33
Consensus pattern (8 bp):
CACTATTA
Found at i:74464608 original size:157 final size:157
Alignment explanation
Indices: 74464398--74464776 Score: 411
Period size: 157 Copynumber: 2.4 Consensus size: 157
74464388 ATCTCCAAAG
*
74464398 AAAACGACGCCG-TTTCTGTTAAGTACT-AA-T-T-TTTTGCAGCGTTTATTTA-AAAAACGCCG
1 AAAACGACGCCGTTTTCT-TTAA--ACTAAACTATCTTTTGCAGCGTTT-TCTATAAAAACGCCG
* * *
74464457 CTAATCC-CTATATATTTAACTAAAATGACGACG-TGTACAGTAAAATTTAATTATTTTGCGGCG
62 CTAATCCTCTATATATTCAACTAAAACGACGACGCT-TACAGTAAAATTTAATTATGTTGCGGCG
*
74464520 TTTTT-AAAAGTGCCACTAATACCCTCAT-ATACT
126 TTTTTCAAAA-CGCCACTAATACCCT-ATCA-ACT
* * **
74464553 AAAACGGCGCCGTTTTCTTTAAACTAAACTGTCTTTTGTGGCGTTTTCTATAAAAACGCCGC-AA
1 AAAACGACGCCGTTTTCTTTAAACTAAACTATCTTTTGCAGCGTTTTCTATAAAAACGCCGCTAA
* * * * *
74464617 TCCTCTATATATTCAACTAAAACGACGACGCTTCCAGTACAGTTTACTTCTGTTGCGGCGTTTTT
66 TCCTCTATATATTCAACTAAAACGACGACGCTTACAGTAAAATTTAATTATGTTGCGGCGTTTTT
*
74464682 CAAAACGCCACTAATACTCTATCCAACT
131 CAAAACGCCACTAATACCCTAT-CAACT
* * * * * *
74464710 AAAACGACGCCGTTTTCTTTCAACTATACTATTTTTTGCAGCGTTTTTTTTAAAAACGCCACTAA
1 AAAACGACGCCGTTTTCTTTAAACTAAACTATCTTTTGCAGCGTTTTCTATAAAAACGCCGCTAA
74464775 TC
66 TC
74464777 TCTTAATTTT
Statistics
Matches: 188, Mismatches: 24, Indels: 21
0.81 0.10 0.09
Matches are distributed among these distances:
153 3 0.02
154 2 0.01
155 16 0.09
156 16 0.09
157 141 0.75
158 10 0.05
ACGTcount: A:0.30, C:0.22, G:0.13, T:0.35
Consensus pattern (157 bp):
AAAACGACGCCGTTTTCTTTAAACTAAACTATCTTTTGCAGCGTTTTCTATAAAAACGCCGCTAA
TCCTCTATATATTCAACTAAAACGACGACGCTTACAGTAAAATTTAATTATGTTGCGGCGTTTTT
CAAAACGCCACTAATACCCTATCAACT
Found at i:74466267 original size:38 final size:37
Alignment explanation
Indices: 74466224--74466302 Score: 97
Period size: 38 Copynumber: 2.1 Consensus size: 37
74466214 TCCAAGGCGC
*
74466224 CGCTAATGGTCAAGC-TATAGCGGCATTTCTCATATAAG
1 CGCTAATGCTCAA-CATATAGCGGCATTTC-CATATAAG
* * *
74466262 CGCTAATTCTCAACATATAGCGGCTTTTCCTTATAAG
1 CGCTAATGCTCAACATATAGCGGCATTTCCATATAAG
74466299 CGCT
1 CGCT
74466303 GCTAATGCTC
Statistics
Matches: 36, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
37 12 0.33
38 24 0.67
ACGTcount: A:0.27, C:0.24, G:0.18, T:0.32
Consensus pattern (37 bp):
CGCTAATGCTCAACATATAGCGGCATTTCCATATAAG
Found at i:74466383 original size:40 final size:39
Alignment explanation
Indices: 74466303--74466386 Score: 105
Period size: 39 Copynumber: 2.1 Consensus size: 39
74466293 TATAAGCGCT
* * **
74466303 GCTAATGCTCTTTTTTAGTGGCGTTTTTGTGGAAGGGCC
1 GCTAATGCTCTTTTCTAGTGGCGTTTTTGTGAAAACGCC
* *
74466342 GCTAATGCTCTTTTCTAGTGGCCTTTTTTGTTAAAACGCC
1 GCTAATGCTCTTTTCTAGTGG-CGTTTTTGTGAAAACGCC
74466382 GCTAA
1 GCTAA
74466387 AAGCGCCACT
Statistics
Matches: 38, Mismatches: 6, Indels: 1
0.84 0.13 0.02
Matches are distributed among these distances:
39 20 0.53
40 18 0.47
ACGTcount: A:0.17, C:0.19, G:0.24, T:0.40
Consensus pattern (39 bp):
GCTAATGCTCTTTTCTAGTGGCGTTTTTGTGAAAACGCC
Found at i:74466811 original size:12 final size:12
Alignment explanation
Indices: 74466794--74466821 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
74466784 AGGAAAACAG
74466794 GTTTTTAGTGGC
1 GTTTTTAGTGGC
74466806 GTTTTTAGTGGC
1 GTTTTTAGTGGC
74466818 GTTT
1 GTTT
74466822 GGACAAAAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.07, C:0.07, G:0.32, T:0.54
Consensus pattern (12 bp):
GTTTTTAGTGGC
Found at i:74467021 original size:111 final size:111
Alignment explanation
Indices: 74466827--74467064 Score: 379
Period size: 111 Copynumber: 2.1 Consensus size: 111
74466817 CGTTTGGACA
* *
74466827 AAAAACGCCGCAAAAGTTATACATTAGTGGCGCTAATAGGAAAACACCACAAAAGGTTAGAGCTA
1 AAAAATGCCGCAAAAGTTATACATTAGTGGCACTAATAGGAAAACACCACAAAAGGTTAGAGCTA
* *
74466892 TAGCTGTGTTTTAAACAAAAGGTCAAGCAGCAGCGGGGTTTATGAT
66 TAGCTGCGTTTTAAACAAAAGGTCAAGCAGCAGCGGCGTTTATGAT
* *
74466938 AAAAATGCCGCAAAAGTTATACATTAGTGGCACTAATAGGAAAACGCCGCAAAAGGTTAGAGCTA
1 AAAAATGCCGCAAAAGTTATACATTAGTGGCACTAATAGGAAAACACCACAAAAGGTTAGAGCTA
* * *
74467003 TAGC-GCCGTTTTTAACAAAAGGTCAAGTAGTAGCGGCGTTTATGAT
66 TAGCTG-CGTTTTAAACAAAAGGTCAAGCAGCAGCGGCGTTTATGAT
74467049 AAAAATGCCGCAAAAG
1 AAAAATGCCGCAAAAG
74467065 GTCAAGCAGT
Statistics
Matches: 117, Mismatches: 9, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
110 1 0.01
111 116 0.99
ACGTcount: A:0.39, C:0.16, G:0.23, T:0.21
Consensus pattern (111 bp):
AAAAATGCCGCAAAAGTTATACATTAGTGGCACTAATAGGAAAACACCACAAAAGGTTAGAGCTA
TAGCTGCGTTTTAAACAAAAGGTCAAGCAGCAGCGGCGTTTATGAT
Found at i:74467103 original size:41 final size:41
Alignment explanation
Indices: 74467018--74467131 Score: 124
Period size: 41 Copynumber: 2.8 Consensus size: 41
74467008 CCGTTTTTAA
* * * **
74467018 CAAAAGGTCAAGTAGTAGCGGCGTTTATGATAAAAATGCCG
1 CAAAAGGTCAAGCAGTAGCAGTGTTTATGATAAAAACACCG
* *
74467059 CAAAAGGTCAAGCAGTAGCAGTGTTTATGGTAAAAACACTG
1 CAAAAGGTCAAGCAGTAGCAGTGTTTATGATAAAAACACCG
**
74467100 C-AAAGGAGAAGCAGTAG-AGATGTTTATGATAA
1 CAAAAGGTCAAGCAGTAGCAG-TGTTTATGATAA
74467132 TTTTATTTTA
Statistics
Matches: 62, Mismatches: 10, Indels: 3
0.83 0.13 0.04
Matches are distributed among these distances:
39 2 0.03
40 25 0.40
41 35 0.56
ACGTcount: A:0.39, C:0.12, G:0.26, T:0.22
Consensus pattern (41 bp):
CAAAAGGTCAAGCAGTAGCAGTGTTTATGATAAAAACACCG
Found at i:74467150 original size:7 final size:7
Alignment explanation
Indices: 74467138--74467347 Score: 59
Period size: 7 Copynumber: 29.3 Consensus size: 7
74467128 ATAATTTTAT
74467138 TTTAGGG
1 TTTAGGG
*
74467145 TTTAGGT
1 TTTAGGG
* *
74467152 TTTAAGA
1 TTTAGGG
**
74467159 TTTAATG
1 TTTAGGG
*
74467166 TTTAAGG
1 TTTAGGG
*
74467173 TTTAAGG
1 TTTAGGG
* *
74467180 TCTATGG
1 TTTAGGG
**
74467187 TTTATGAT
1 TTTA-GGG
74467195 TTTAGGG
1 TTTAGGG
*
74467202 TTTATGG
1 TTTAGGG
**
74467209 TTTAATG
1 TTTAGGG
* **
74467216 ATTAGTA
1 TTTAGGG
*
74467223 TTTTGGG
1 TTTAGGG
74467230 TTTAGGG
1 TTTAGGG
*
74467237 TTTAGTGT
1 TTTAG-GG
*
74467245 TTTAAGG
1 TTTAGGG
**
74467252 TTTAAAG
1 TTTAGGG
74467259 TTTAGGG
1 TTTAGGG
*
74467266 TTTATGG
1 TTTAGGG
74467273 TTT-GAGG
1 TTTAG-GG
*
74467280 TTTAGTG
1 TTTAGGG
*
74467287 TCTT-GTAG
1 T-TTAG-GG
74467295 -TTAGGG
1 TTTAGGG
*
74467301 TCTTAGTG
1 T-TTAGGG
*
74467309 TTTAAGGT
1 TTT-AGGG
*
74467317 TTTAAGG
1 TTTAGGG
74467324 -TTAGGG
1 TTTAGGG
74467330 TGTTAGGG
1 T-TTAGGG
74467338 TTTAAGGG
1 TTT-AGGG
74467346 TT
1 TT
74467348 CGGGATTTTG
Statistics
Matches: 148, Mismatches: 42, Indels: 25
0.69 0.20 0.12
Matches are distributed among these distances:
6 8 0.05
7 103 0.70
8 37 0.25
ACGTcount: A:0.20, C:0.01, G:0.30, T:0.48
Consensus pattern (7 bp):
TTTAGGG
Found at i:74467207 original size:22 final size:23
Alignment explanation
Indices: 74467173--74467218 Score: 67
Period size: 22 Copynumber: 2.0 Consensus size: 23
74467163 ATGTTTAAGG
74467173 TTTAAGGTCTATGGTTT-ATGAT
1 TTTAAGGTCTATGGTTTAATGAT
* *
74467195 TTTAGGGTTTATGGTTTAATGAT
1 TTTAAGGTCTATGGTTTAATGAT
74467218 T
1 T
74467219 AGTATTTTGG
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
22 15 0.71
23 6 0.29
ACGTcount: A:0.22, C:0.02, G:0.24, T:0.52
Consensus pattern (23 bp):
TTTAAGGTCTATGGTTTAATGAT
Found at i:74467263 original size:29 final size:28
Alignment explanation
Indices: 74467229--74467283 Score: 83
Period size: 28 Copynumber: 1.9 Consensus size: 28
74467219 AGTATTTTGG
*
74467229 GTTTAGGGTTTAGTGTTTTAAGGTTTAAA
1 GTTTAGGGTTTA-TGGTTTAAGGTTTAAA
*
74467258 GTTTAGGGTTTATGGTTTGAGGTTTA
1 GTTTAGGGTTTATGGTTTAAGGTTTA
74467284 GTGTCTTGTA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
28 12 0.50
29 12 0.50
ACGTcount: A:0.20, C:0.00, G:0.31, T:0.49
Consensus pattern (28 bp):
GTTTAGGGTTTATGGTTTAAGGTTTAAA
Found at i:74467285 original size:64 final size:64
Alignment explanation
Indices: 74467195--74467344 Score: 178
Period size: 64 Copynumber: 2.3 Consensus size: 64
74467185 GGTTTATGAT
* * *
74467195 TTTAGGGTTTATGGTTTAATGATTAGTATTTTG-GGTTTAGGGT-TTAGTGTTTTAAGGTTTAAA
1 TTTAGGGTTTATGGTTTAAGGATTAGTATCTTGTAG-TTAGGGTCTTAGTG-TTTAAGGTTTAAA
74467258 G
64 G
* * * *
74467259 TTTAGGGTTTATGGTTTGAGGTTTAGTGTCTTGTAGTTAGGGTCTTAGTGTTTAAGGTTTTAAG
1 TTTAGGGTTTATGGTTTAAGGATTAGTATCTTGTAGTTAGGGTCTTAGTGTTTAAGGTTTAAAG
* *
74467323 GTTAGGGTGTTAGGGTTTAAGG
1 TTTAGGGT-TTATGGTTTAAGG
74467345 GTTCGGGATT
Statistics
Matches: 73, Mismatches: 10, Indels: 5
0.83 0.11 0.06
Matches are distributed among these distances:
64 55 0.75
65 18 0.25
ACGTcount: A:0.19, C:0.01, G:0.32, T:0.47
Consensus pattern (64 bp):
TTTAGGGTTTATGGTTTAAGGATTAGTATCTTGTAGTTAGGGTCTTAGTGTTTAAGGTTTAAAG
Found at i:74467481 original size:28 final size:28
Alignment explanation
Indices: 74467448--74467541 Score: 93
Period size: 28 Copynumber: 3.4 Consensus size: 28
74467438 AATATATATA
*
74467448 TAGGGTTTAGTGTTTAGGGTGTATAATT
1 TAGGGTTTAGTGTTTAGGGTCTATAATT
* *
74467476 TAGGGTTTAGGGTTTAGGGTTTA-AGATT
1 TAGGGTTTAGTGTTTAGGGTCTATA-ATT
* * **
74467504 TACGGTATA-TGGTTTAGGGTCTATGGTT
1 TAGGGTTTAGT-GTTTAGGGTCTATAATT
74467532 TAGGGTTTAG
1 TAGGGTTTAG
74467542 GGATAAAATT
Statistics
Matches: 52, Mismatches: 10, Indels: 7
0.75 0.14 0.10
Matches are distributed among these distances:
27 1 0.02
28 51 0.98
ACGTcount: A:0.20, C:0.02, G:0.34, T:0.44
Consensus pattern (28 bp):
TAGGGTTTAGTGTTTAGGGTCTATAATT
Found at i:74467486 original size:7 final size:7
Alignment explanation
Indices: 74467448--74467543 Score: 84
Period size: 7 Copynumber: 13.7 Consensus size: 7
74467438 AATATATATA
74467448 TAGGGTT
1 TAGGGTT
*
74467455 TAGTGTT
1 TAGGGTT
*
74467462 TAGGGTG
1 TAGGGTT
***
74467469 TATAATT
1 TAGGGTT
74467476 TAGGGTT
1 TAGGGTT
74467483 TAGGGTT
1 TAGGGTT
74467490 TAGGGTT
1 TAGGGTT
* *
74467497 TAAGATT
1 TAGGGTT
* *
74467504 TACGGTA
1 TAGGGTT
*
74467511 TATGGTT
1 TAGGGTT
*
74467518 TAGGGTC
1 TAGGGTT
*
74467525 TATGGTT
1 TAGGGTT
74467532 TAGGGTT
1 TAGGGTT
74467539 TAGGG
1 TAGGG
74467544 ATAAAATTTG
Statistics
Matches: 67, Mismatches: 22, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
7 67 1.00
ACGTcount: A:0.20, C:0.02, G:0.35, T:0.43
Consensus pattern (7 bp):
TAGGGTT
Found at i:74468116 original size:124 final size:125
Alignment explanation
Indices: 74467849--74468141 Score: 311
Period size: 124 Copynumber: 2.3 Consensus size: 125
74467839 CGGTGTTGTT
* * * * * * *
74467849 TCTTTATTAGCATTAGCGGCTCTAGGTGAAAAACTCCGCAATAGATCGAGCATTAGAGGCGCTTG
1 TCTTTAGTGGCATTAGCGGCACTAGGTGAAAAACGCCGCAATAGATCGACCATTAGAGGCACTTA
* *
74467914 GTAAAAAATGCCGCAAAAAAAAACAATTTACTTTAAATAAAACGGCACCATTTTAAGTTGCG
66 CTAAAAAA--CCGCAAAAAAAAACAATTTACTTTAAATAAAACGGCACCATTTTAAGTAGCG
* * * *
74467976 TCTTTAGTGGCTTTAGCGGCACTATGTGAAAAACGCCGCAATAGATCGACCATTAGTGTCAC-TA
1 TCTTTAGTGGCATTAGCGGCACTAGGTGAAAAACGCCGCAATAGATCGACCATTAGAGGCACTTA
* * * * ** * *
74468040 CTCAAAAAA-CGCCACAAAAAACATTTTACTTTAATTAAAACGGTGCCGTTTTAGGTAGCG
66 CT-AAAAAACCGCAAAAAAAAACAATTTACTTTAAATAAAACGGCACCATTTTAAGTAGCG
** * *
74468100 TCTTTAGTGGCATTAGCGGTGCTAGGTAAAAAAACGCTGCAA
1 TCTTTAGTGGCATTAGCGGCACTAGGT-GAAAAACGCCGCAA
74468142 AATTTTTTTA
Statistics
Matches: 137, Mismatches: 27, Indels: 6
0.81 0.16 0.04
Matches are distributed among these distances:
124 65 0.47
125 12 0.09
126 2 0.01
127 58 0.42
ACGTcount: A:0.34, C:0.19, G:0.20, T:0.27
Consensus pattern (125 bp):
TCTTTAGTGGCATTAGCGGCACTAGGTGAAAAACGCCGCAATAGATCGACCATTAGAGGCACTTA
CTAAAAAACCGCAAAAAAAAACAATTTACTTTAAATAAAACGGCACCATTTTAAGTAGCG
Found at i:74468405 original size:18 final size:18
Alignment explanation
Indices: 74468354--74468405 Score: 70
Period size: 18 Copynumber: 2.8 Consensus size: 18
74468344 TTCCCCCAAC
*
74468354 AAATTTTCCCCAATTCCTT
1 AAATTTTCCCCAA-TCCCT
74468373 AAA-TTTCCCCTAATCCCT
1 AAATTTTCCCC-AATCCCT
74468391 AAATTTTCCCCAATC
1 AAATTTTCCCCAATC
74468406 AAAATCCCAA
Statistics
Matches: 30, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
18 18 0.60
19 12 0.40
ACGTcount: A:0.29, C:0.35, G:0.00, T:0.37
Consensus pattern (18 bp):
AAATTTTCCCCAATCCCT
Found at i:74470559 original size:9 final size:9
Alignment explanation
Indices: 74470547--74470632 Score: 75
Period size: 9 Copynumber: 9.6 Consensus size: 9
74470537 TATATAATAT
74470547 CATAACTTA
1 CATAACTTA
* *
74470556 CATACCTCA
1 CATAACTTA
*
74470565 CATAACGTA
1 CATAACTTA
74470574 CATAACTTA
1 CATAACTTA
74470583 CATAACTTA
1 CATAACTTA
* *
74470592 TATAA-ATA
1 CATAACTTA
* * *
74470600 TATATCATA
1 CATAACTTA
74470609 TCATAACTTA
1 -CATAACTTA
74470619 CATAACTTA
1 CATAACTTA
*
74470628 GATAA
1 CATAA
74470633 TACATAAATA
Statistics
Matches: 62, Mismatches: 13, Indels: 4
0.78 0.16 0.05
Matches are distributed among these distances:
8 6 0.10
9 50 0.81
10 6 0.10
ACGTcount: A:0.45, C:0.20, G:0.02, T:0.33
Consensus pattern (9 bp):
CATAACTTA
Found at i:74470589 original size:36 final size:36
Alignment explanation
Indices: 74470547--74470643 Score: 101
Period size: 36 Copynumber: 2.8 Consensus size: 36
74470537 TATATAATAT
** *
74470547 CATAACTTACATACCTCACATAACGTA-CATAACTTA
1 CATAACTTACATAAAT-ACATAACATATCATAACTTA
* * *
74470583 CATAACTTATATAAATATATATCATATCATAACTTA
1 CATAACTTACATAAATACATAACATATCATAACTTA
*
74470619 CATAACTTAGAT-AATACATAA-ATAT
1 CATAACTTACATAAATACATAACATAT
74470644 ATATCATATC
Statistics
Matches: 51, Mismatches: 9, Indels: 4
0.80 0.14 0.06
Matches are distributed among these distances:
34 4 0.08
35 14 0.27
36 33 0.65
ACGTcount: A:0.46, C:0.19, G:0.02, T:0.33
Consensus pattern (36 bp):
CATAACTTACATAAATACATAACATATCATAACTTA
Found at i:74470637 original size:61 final size:60
Alignment explanation
Indices: 74470511--74470639 Score: 161
Period size: 63 Copynumber: 2.1 Consensus size: 60
74470501 TCTTTAAAAT
* * * *
74470511 TACATAACTTATATACCTTAAATATATATATAATATCATAACTTACATACCTCACATAAC
1 TACATAACTTACATAACTTAAAAATATATATAATATCATAACTTACATAACTCACATAAC
* * *
74470571 GTACATAACTTACATAACTTATATAAATATATATCATATCATAACTTACATAACTTAGATAA-
1 -TACATAACTTACATAACTTA-A-AAATATATATAATATCATAACTTACATAACTCACATAAC
74470633 TACATAA
1 TACATAA
74470640 ATATATATCA
Statistics
Matches: 59, Mismatches: 7, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
61 25 0.42
62 1 0.02
63 33 0.56
ACGTcount: A:0.47, C:0.17, G:0.02, T:0.35
Consensus pattern (60 bp):
TACATAACTTACATAACTTAAAAATATATATAATATCATAACTTACATAACTCACATAAC
Found at i:74470654 original size:43 final size:44
Alignment explanation
Indices: 74470565--74470676 Score: 154
Period size: 43 Copynumber: 2.5 Consensus size: 44
74470555 ACATACCTCA
* *
74470565 CATAACGTACATAACTTACATAACTTATATAAATATATATCATAT
1 CATAACTTACATAACTTACATAAC-TACATAAATATATATCATAT
*
74470610 CATAACTTACATAACTTAGATAA-TACATAAATATATATCATAT
1 CATAACTTACATAACTTACATAACTACATAAATATATATCATAT
* **
74470653 CATAAATGCCATAACTTACATAAC
1 CATAACTTACATAACTTACATAAC
74470677 ATAGGCTAAG
Statistics
Matches: 59, Mismatches: 7, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
43 38 0.64
45 21 0.36
ACGTcount: A:0.47, C:0.17, G:0.03, T:0.33
Consensus pattern (44 bp):
CATAACTTACATAACTTACATAACTACATAAATATATATCATAT
Found at i:74470765 original size:21 final size:21
Alignment explanation
Indices: 74470738--74470790 Score: 79
Period size: 21 Copynumber: 2.5 Consensus size: 21
74470728 AGCGGTGGCG
*
74470738 GTGAGATTAGTTACTGTAGCA
1 GTGAGATTAGATACTGTAGCA
* *
74470759 TTGAGATTGGATACTGTAGCA
1 GTGAGATTAGATACTGTAGCA
74470780 GTGAGATTAGA
1 GTGAGATTAGA
74470791 AACAATGGTG
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.30, C:0.08, G:0.30, T:0.32
Consensus pattern (21 bp):
GTGAGATTAGATACTGTAGCA
Found at i:74472420 original size:84 final size:84
Alignment explanation
Indices: 74472279--74472528 Score: 500
Period size: 84 Copynumber: 3.0 Consensus size: 84
74472269 CATTTGAATT
74472279 TGATTCTCTATTTCCAAGAATGTACAATGATAATGCTAATTTCTCCATCACCGATACTTTCCCAT
1 TGATTCTCTATTTCCAAGAATGTACAATGATAATGCTAATTTCTCCATCACCGATACTTTCCCAT
74472344 GCTTTAAGCCATAATTTAA
66 GCTTTAAGCCATAATTTAA
74472363 TGATTCTCTATTTCCAAGAATGTACAATGATAATGCTAATTTCTCCATCACCGATACTTTCCCAT
1 TGATTCTCTATTTCCAAGAATGTACAATGATAATGCTAATTTCTCCATCACCGATACTTTCCCAT
74472428 GCTTTAAGCCATAATTTAA
66 GCTTTAAGCCATAATTTAA
74472447 TGATTCTCTATTTCCAAGAATGTACAATGATAATGCTAATTTCTCCATCACCGATACTTTCCCAT
1 TGATTCTCTATTTCCAAGAATGTACAATGATAATGCTAATTTCTCCATCACCGATACTTTCCCAT
74472512 GCTTTAAGCCATAATTT
66 GCTTTAAGCCATAATTT
74472529 GTTTGCAAAT
Statistics
Matches: 166, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
84 166 1.00
ACGTcount: A:0.30, C:0.23, G:0.10, T:0.37
Consensus pattern (84 bp):
TGATTCTCTATTTCCAAGAATGTACAATGATAATGCTAATTTCTCCATCACCGATACTTTCCCAT
GCTTTAAGCCATAATTTAA
Found at i:74474498 original size:9 final size:9
Alignment explanation
Indices: 74474481--74474525 Score: 63
Period size: 9 Copynumber: 5.0 Consensus size: 9
74474471 GAAAGGAGCT
*
74474481 CTTATATAA
1 CTTACATAA
74474490 CTTACATAA
1 CTTACATAA
74474499 CTTACATAA
1 CTTACATAA
*
74474508 TTTACATAA
1 CTTACATAA
*
74474517 CTAACATAA
1 CTTACATAA
74474526 ATAAATATCA
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
9 32 1.00
ACGTcount: A:0.47, C:0.18, G:0.00, T:0.36
Consensus pattern (9 bp):
CTTACATAA
Found at i:74477974 original size:13 final size:13
Alignment explanation
Indices: 74477956--74478004 Score: 89
Period size: 13 Copynumber: 3.8 Consensus size: 13
74477946 GTGTAGGCTT
74477956 CACACGCCCAGGG
1 CACACGCCCAGGG
74477969 CACACGCCCAGGG
1 CACACGCCCAGGG
*
74477982 CACATGCCCAGGG
1 CACACGCCCAGGG
74477995 CACACGCCCA
1 CACACGCCCA
74478005 TGCCTAAGCC
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 34 1.00
ACGTcount: A:0.24, C:0.47, G:0.27, T:0.02
Consensus pattern (13 bp):
CACACGCCCAGGG
Found at i:74478646 original size:32 final size:32
Alignment explanation
Indices: 74478610--74478674 Score: 130
Period size: 32 Copynumber: 2.0 Consensus size: 32
74478600 TGTATGCATT
74478610 TTAGCATTTTAATAGTTAATGGATGATGGGCA
1 TTAGCATTTTAATAGTTAATGGATGATGGGCA
74478642 TTAGCATTTTAATAGTTAATGGATGATGGGCA
1 TTAGCATTTTAATAGTTAATGGATGATGGGCA
74478674 T
1 T
74478675 GGTAAGCATT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.31, C:0.06, G:0.25, T:0.38
Consensus pattern (32 bp):
TTAGCATTTTAATAGTTAATGGATGATGGGCA
Found at i:74481566 original size:12 final size:12
Alignment explanation
Indices: 74481549--74481598 Score: 82
Period size: 12 Copynumber: 4.2 Consensus size: 12
74481539 TACTCGGGGA
74481549 AGAGGCCGTGGT
1 AGAGGCCGTGGT
74481561 AGAGGCCGTGGT
1 AGAGGCCGTGGT
74481573 AGAGGCCGTGGT
1 AGAGGCCGTGGT
* *
74481585 CGAGGCCGAGGT
1 AGAGGCCGTGGT
74481597 AG
1 AG
74481599 TACTCAAGCT
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
12 35 1.00
ACGTcount: A:0.18, C:0.18, G:0.50, T:0.14
Consensus pattern (12 bp):
AGAGGCCGTGGT
Found at i:74485333 original size:32 final size:32
Alignment explanation
Indices: 74485297--74485457 Score: 322
Period size: 32 Copynumber: 5.0 Consensus size: 32
74485287 TGTATGCATT
74485297 TTAGCATTTTAATAGTTAATGGATGATGGGCA
1 TTAGCATTTTAATAGTTAATGGATGATGGGCA
74485329 TTAGCATTTTAATAGTTAATGGATGATGGGCA
1 TTAGCATTTTAATAGTTAATGGATGATGGGCA
74485361 TTAGCATTTTAATAGTTAATGGATGATGGGCA
1 TTAGCATTTTAATAGTTAATGGATGATGGGCA
74485393 TTAGCATTTTAATAGTTAATGGATGATGGGCA
1 TTAGCATTTTAATAGTTAATGGATGATGGGCA
74485425 TTAGCATTTTAATAGTTAATGGATGATGGGCA
1 TTAGCATTTTAATAGTTAATGGATGATGGGCA
74485457 T
1 T
74485458 GGTAAGCATT
Statistics
Matches: 129, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 129 1.00
ACGTcount: A:0.31, C:0.06, G:0.25, T:0.38
Consensus pattern (32 bp):
TTAGCATTTTAATAGTTAATGGATGATGGGCA
Found at i:74488208 original size:42 final size:42
Alignment explanation
Indices: 74488156--74488253 Score: 135
Period size: 42 Copynumber: 2.3 Consensus size: 42
74488146 ATAGCTCGAC
*
74488156 TATGGTCTTACACAAAATTTCAT-ATCAGTGCCATATCCCAGA
1 TATGGTCTTACACAAAATCTCATAATCA-TGCCATATCCCAGA
** * *
74488198 TATGGTCTTACATGAAATCTCATAATGATGTCATATCCCAGA
1 TATGGTCTTACACAAAATCTCATAATCATGCCATATCCCAGA
74488240 TATGGTCTTACACA
1 TATGGTCTTACACA
74488254 TAGTCTCGGT
Statistics
Matches: 48, Mismatches: 7, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
42 45 0.94
43 3 0.06
ACGTcount: A:0.33, C:0.21, G:0.13, T:0.33
Consensus pattern (42 bp):
TATGGTCTTACACAAAATCTCATAATCATGCCATATCCCAGA
Found at i:74495713 original size:43 final size:42
Alignment explanation
Indices: 74495657--74495778 Score: 113
Period size: 42 Copynumber: 2.9 Consensus size: 42
74495647 ATATGGGATC
* * * *
74495657 TCATTTCGATGCCAATAGCCCGGCTATGGTTTTACACAAAATT
1 TCATATCGATGCC-ATAGCCCAGATATGGTCTTACACAAAATT
* * *
74495700 TCATATCGGTGCCATATCCCAGATATGGTCTTACACGAAATCT
1 TCATATCGATGCCATAGCCCAGATATGGTCTTACACAAAAT-T
* * *
74495743 T-ATAAT-GATGTCATATCCCAAATATGGTCTTACACA
1 TCAT-ATCGATGCCATAGCCCAGATATGGTCTTACACA
74495779 TAGTCTCGGT
Statistics
Matches: 66, Mismatches: 11, Indels: 5
0.80 0.13 0.06
Matches are distributed among these distances:
42 51 0.77
43 15 0.23
ACGTcount: A:0.30, C:0.23, G:0.15, T:0.32
Consensus pattern (42 bp):
TCATATCGATGCCATAGCCCAGATATGGTCTTACACAAAATT
Found at i:74495734 original size:42 final size:42
Alignment explanation
Indices: 74495681--74495778 Score: 119
Period size: 42 Copynumber: 2.3 Consensus size: 42
74495671 ATAGCCCGGC
* * *
74495681 TATGGTTTTACACAAAAT-TTCAT-ATCGGTGCCATATCCCAGA
1 TATGGTCTTACACAAAATCTT-ATAAT-GATGCCATATCCCAAA
* *
74495723 TATGGTCTTACACGAAATCTTATAATGATGTCATATCCCAAA
1 TATGGTCTTACACAAAATCTTATAATGATGCCATATCCCAAA
74495765 TATGGTCTTACACA
1 TATGGTCTTACACA
74495779 TAGTCTCGGT
Statistics
Matches: 48, Mismatches: 6, Indels: 4
0.83 0.10 0.07
Matches are distributed among these distances:
42 44 0.92
43 4 0.08
ACGTcount: A:0.33, C:0.20, G:0.13, T:0.34
Consensus pattern (42 bp):
TATGGTCTTACACAAAATCTTATAATGATGCCATATCCCAAA
Found at i:74500590 original size:30 final size:30
Alignment explanation
Indices: 74500554--74500616 Score: 117
Period size: 30 Copynumber: 2.1 Consensus size: 30
74500544 ATGGCCATTT
74500554 ACAAAATAAATTATCAACCATCAGAAGCTA
1 ACAAAATAAATTATCAACCATCAGAAGCTA
*
74500584 ACAAAATAAATTATCAACCATCATAAGCTA
1 ACAAAATAAATTATCAACCATCAGAAGCTA
74500614 ACA
1 ACA
74500617 CATTTGGCAA
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 32 1.00
ACGTcount: A:0.54, C:0.21, G:0.05, T:0.21
Consensus pattern (30 bp):
ACAAAATAAATTATCAACCATCAGAAGCTA
Done.