Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr9
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 91122320
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2661692 characters in sequence are not A, C, G, or T
File 229 of 279
Found at i:74923877 original size:43 final size:42
Alignment explanation
Indices: 74923789--74923945 Score: 102
Period size: 43 Copynumber: 3.7 Consensus size: 42
74923779 AGCTCGTACA
* * ** * **
74923789 ATGCCATATCCCAGATATGGTCTTACATGTTATCACATATTG
1 ATGCCATAGCCCAGATATGGTCTTACACGAAATCAAATAACG
*
74923831 ATGCCGATAGCCCAGCTATGGTCTTACACGAAATCAAATAACG
1 ATGCC-ATAGCCCAGATATGGTCTTACACGAAATCAAATAACG
* * * * * *
74923874 ATGCCA-ATGTCCTAGACATAGTCTTACACGTAATCACATAATG
1 ATGCCATA-G-CCCAGATATGGTCTTACACGAAATCAAATAACG
* * *
74923917 AGGCCA-ATGTCCCATACATGGTCTTACAC
1 ATGCCATA-G-CCCAGATATGGTCTTACAC
74923946 ATAATCACAT
Statistics
Matches: 93, Mismatches: 19, Indels: 5
0.79 0.16 0.04
Matches are distributed among these distances:
41 1 0.01
42 7 0.08
43 85 0.91
ACGTcount: A:0.32, C:0.25, G:0.16, T:0.27
Consensus pattern (42 bp):
ATGCCATAGCCCAGATATGGTCTTACACGAAATCAAATAACG
Found at i:74923951 original size:43 final size:43
Alignment explanation
Indices: 74923848--74923955 Score: 137
Period size: 43 Copynumber: 2.5 Consensus size: 43
74923838 TAGCCCAGCT
* * *
74923848 ATGGTCTTACACGA-AATCAAATAACGATGCCAATGTCCTAGAC
1 ATGGTCTTACAC-ATAATCACATAACGAGGCCAATGTCCCAGAC
* * * *
74923891 ATAGTCTTACACGTAATCACATAATGAGGCCAATGTCCCATAC
1 ATGGTCTTACACATAATCACATAACGAGGCCAATGTCCCAGAC
74923934 ATGGTCTTACACATAATCACAT
1 ATGGTCTTACACATAATCACAT
74923956 CTCGTTAATC
Statistics
Matches: 55, Mismatches: 9, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
43 55 1.00
ACGTcount: A:0.36, C:0.24, G:0.14, T:0.26
Consensus pattern (43 bp):
ATGGTCTTACACATAATCACATAACGAGGCCAATGTCCCAGAC
Found at i:74928493 original size:24 final size:24
Alignment explanation
Indices: 74928461--74928506 Score: 92
Period size: 24 Copynumber: 1.9 Consensus size: 24
74928451 TTATTAGGTT
74928461 AGGCTTGAATGATTGGAAATTTCA
1 AGGCTTGAATGATTGGAAATTTCA
74928485 AGGCTTGAATGATTGGAAATTT
1 AGGCTTGAATGATTGGAAATTT
74928507 TGATGAAAAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.33, C:0.07, G:0.26, T:0.35
Consensus pattern (24 bp):
AGGCTTGAATGATTGGAAATTTCA
Found at i:74933545 original size:32 final size:32
Alignment explanation
Indices: 74933504--74933568 Score: 130
Period size: 32 Copynumber: 2.0 Consensus size: 32
74933494 CTAACATAAG
74933504 TTCATTGTCACATTGATCATGGACTCATCATT
1 TTCATTGTCACATTGATCATGGACTCATCATT
74933536 TTCATTGTCACATTGATCATGGACTCATCATT
1 TTCATTGTCACATTGATCATGGACTCATCATT
74933568 T
1 T
74933569 CATGGATCCC
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.25, C:0.22, G:0.12, T:0.42
Consensus pattern (32 bp):
TTCATTGTCACATTGATCATGGACTCATCATT
Found at i:74934076 original size:43 final size:43
Alignment explanation
Indices: 74934015--74934098 Score: 134
Period size: 43 Copynumber: 2.0 Consensus size: 43
74934005 GTCACAGGCA
*
74934015 TCGCATCCACAATGAACTC-GAACCACTCAATGAGCTCGGATGC
1 TCGCATCCACAATGAACTCAG-ACCACTCAACGAGCTCGGATGC
*
74934058 TCGCATCCATAATGAACTCAGACCACTCAACGAGCTCGGAT
1 TCGCATCCACAATGAACTCAGACCACTCAACGAGCTCGGAT
74934099 TGCTTAATTA
Statistics
Matches: 38, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
43 37 0.97
44 1 0.03
ACGTcount: A:0.31, C:0.32, G:0.18, T:0.19
Consensus pattern (43 bp):
TCGCATCCACAATGAACTCAGACCACTCAACGAGCTCGGATGC
Found at i:74941180 original size:9 final size:9
Alignment explanation
Indices: 74941166--74941233 Score: 64
Period size: 9 Copynumber: 7.6 Consensus size: 9
74941156 ATAAGTATAA
74941166 AATTAACCG
1 AATTAACCG
*
74941175 AATTAACTG
1 AATTAACCG
*
74941184 AATTAATCG
1 AATTAACCG
* *
74941193 AATTACCCA
1 AATTAACCG
*
74941202 AATTACCCG
1 AATTAACCG
* *
74941211 AATTATCCA
1 AATTAACCG
*
74941220 AATTAACTG
1 AATTAACCG
74941229 AATTA
1 AATTA
74941234 TTTATATAAA
Statistics
Matches: 47, Mismatches: 12, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
9 47 1.00
ACGTcount: A:0.44, C:0.19, G:0.07, T:0.29
Consensus pattern (9 bp):
AATTAACCG
Found at i:74941224 original size:36 final size:36
Alignment explanation
Indices: 74941165--74941233 Score: 86
Period size: 36 Copynumber: 1.9 Consensus size: 36
74941155 AATAAGTATA
**
74941165 AAATTAACCGAATTAACTGAATTAA-TCGAATTACCC
1 AAATTAACCGAATTAACCAAATTAACT-GAATTACCC
* *
74941201 AAATTACCCGAATTATCCAAATTAACTGAATTA
1 AAATTAACCGAATTAACCAAATTAACTGAATTA
74941234 TTTATATAAA
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
36 27 0.96
37 1 0.04
ACGTcount: A:0.45, C:0.19, G:0.07, T:0.29
Consensus pattern (36 bp):
AAATTAACCGAATTAACCAAATTAACTGAATTACCC
Found at i:74941234 original size:18 final size:18
Alignment explanation
Indices: 74941165--74941234 Score: 77
Period size: 18 Copynumber: 3.9 Consensus size: 18
74941155 AATAAGTATA
* *
74941165 AAATTAACCGAATTAACT
1 AAATTAACCGAATTATCC
* * *
74941183 GAATTAATCGAATTACCC
1 AAATTAACCGAATTATCC
*
74941201 AAATTACCCGAATTATCC
1 AAATTAACCGAATTATCC
*
74941219 AAATTAACTGAATTAT
1 AAATTAACCGAATTAT
74941235 TTATATAAAA
Statistics
Matches: 42, Mismatches: 10, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
18 42 1.00
ACGTcount: A:0.44, C:0.19, G:0.07, T:0.30
Consensus pattern (18 bp):
AAATTAACCGAATTATCC
Found at i:74941342 original size:18 final size:18
Alignment explanation
Indices: 74941319--74941356 Score: 67
Period size: 18 Copynumber: 2.1 Consensus size: 18
74941309 TTTTTTATGA
74941319 TTGGGTTGAGTAATTGGG
1 TTGGGTTGAGTAATTGGG
*
74941337 TTGGGTTGGGTAATTGGG
1 TTGGGTTGAGTAATTGGG
74941355 TT
1 TT
74941357 AATATATATT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.13, C:0.00, G:0.45, T:0.42
Consensus pattern (18 bp):
TTGGGTTGAGTAATTGGG
Found at i:74943179 original size:13 final size:13
Alignment explanation
Indices: 74943161--74943187 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
74943151 TGAATAAAAG
74943161 TATATGGTTGGAT
1 TATATGGTTGGAT
74943174 TATATGGTTGGAT
1 TATATGGTTGGAT
74943187 T
1 T
74943188 TCTAAGGTGG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.22, C:0.00, G:0.30, T:0.48
Consensus pattern (13 bp):
TATATGGTTGGAT
Found at i:74948495 original size:13 final size:15
Alignment explanation
Indices: 74948473--74948505 Score: 52
Period size: 14 Copynumber: 2.3 Consensus size: 15
74948463 AAATAATTTT
74948473 TTTATAAAATTT-AA
1 TTTATAAAATTTCAA
74948487 TTTAT-AAATTTCAA
1 TTTATAAAATTTCAA
74948501 TTTAT
1 TTTAT
74948506 TTTCATTTTA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 6 0.33
14 12 0.67
ACGTcount: A:0.42, C:0.03, G:0.00, T:0.55
Consensus pattern (15 bp):
TTTATAAAATTTCAA
Found at i:74949168 original size:11 final size:11
Alignment explanation
Indices: 74949152--74949181 Score: 53
Period size: 10 Copynumber: 2.8 Consensus size: 11
74949142 AAATTTTTAA
74949152 AATTTTTTTG-
1 AATTTTTTTGT
74949162 AATTTTTTTGT
1 AATTTTTTTGT
74949173 AATTTTTTT
1 AATTTTTTT
74949182 AGAGATAGAC
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
10 10 0.53
11 9 0.47
ACGTcount: A:0.20, C:0.00, G:0.07, T:0.73
Consensus pattern (11 bp):
AATTTTTTTGT
Found at i:74949594 original size:20 final size:21
Alignment explanation
Indices: 74949569--74949624 Score: 60
Period size: 22 Copynumber: 2.7 Consensus size: 21
74949559 ATTTTTCTAT
74949569 TAAAATT-TATTTCAAATATA
1 TAAAATTATATTTCAAATATA
* *
74949589 TAAAATTATATATTTAAATTTA
1 TAAAATTATAT-TTCAAATATA
* *
74949611 TAAGATTGTATTTC
1 TAAAATTATATTTC
74949625 TATATATTCA
Statistics
Matches: 29, Mismatches: 5, Indels: 3
0.78 0.14 0.08
Matches are distributed among these distances:
20 7 0.24
21 5 0.17
22 17 0.59
ACGTcount: A:0.45, C:0.04, G:0.04, T:0.48
Consensus pattern (21 bp):
TAAAATTATATTTCAAATATA
Found at i:74957042 original size:231 final size:231
Alignment explanation
Indices: 74956639--74957797 Score: 2300
Period size: 231 Copynumber: 5.0 Consensus size: 231
74956629 AAGCTACCTA
74956639 TTATCAGTAGTCCACCCTCCATACAAATATACAGAAAGGAAAGTGTGAATAGAAGTGGGAGGGTA
1 TTATCAGTAGTCCACCCTCCATACAAATATACAGAAAGGAAAGTGTGAATAGAAGTGGGAGGGTA
74956704 CTTGAAATAGATCTGACATATGCTCAGGGGGAAGGGGAAGCAGGAAGGAGTTTGATTTCTCCATT
66 CTTGAAATAGATCTGACATATGCTCAGGGGGAAGGGGAAGCAGGAAGGAGTTTGATTTCTCCATT
74956769 TTGCTTTGGATTTAGCGATTGCTATTTTAATGTTTGAGCTCTTACACTTGACTCTGGATTGACTT
131 TTGCTTTGGATTTAGCGATTGCTATTTTAATGTTTGAGCTCTTACACTTGACTCTGGATTGACTT
74956834 TTTTTCTGTATTTATGTCATAGTTTTCTCAAAATTG
196 TTTTTCTGTATTTATGTCATAGTTTTCTCAAAATTG
74956870 TTATCAGTAGTCCACCCTCCATACAAATATACAGAAAGGAAAGTGTGAATAGAAGTGGGAGGGTA
1 TTATCAGTAGTCCACCCTCCATACAAATATACAGAAAGGAAAGTGTGAATAGAAGTGGGAGGGTA
74956935 CTTGAAATAGATCTGACATATGCTCAGGGGGAAGGGGAAGCAGGAAGGAGTTTGATTTCTCCATT
66 CTTGAAATAGATCTGACATATGCTCAGGGGGAAGGGGAAGCAGGAAGGAGTTTGATTTCTCCATT
74957000 TTGCTTTGGATTTAGCGATTGCTATTTTAATGTTTGAGCTCTTACACTTGACTCTGGATTGACTT
131 TTGCTTTGGATTTAGCGATTGCTATTTTAATGTTTGAGCTCTTACACTTGACTCTGGATTGACTT
74957065 TTTTTCTGTATTTATGTCATAGTTTTCTCAAAATTG
196 TTTTTCTGTATTTATGTCATAGTTTTCTCAAAATTG
74957101 TTATCAGTAGTCCACCCTCCATACAAATATACAGAAAGGAAAGTGTGAATAGAAGTGGGAGGGTA
1 TTATCAGTAGTCCACCCTCCATACAAATATACAGAAAGGAAAGTGTGAATAGAAGTGGGAGGGTA
74957166 CTTGAAATAGATCTGACATATGCTCAGGGGGAAGGGGAAGCAGGAAGGAGTTTGATTTCTCCATT
66 CTTGAAATAGATCTGACATATGCTCAGGGGGAAGGGGAAGCAGGAAGGAGTTTGATTTCTCCATT
74957231 TTGCTTTGGATTTAGCGATTGCTATTTTAATGTTTGAGCTCTTACACTTGACTCTGGATTGACTT
131 TTGCTTTGGATTTAGCGATTGCTATTTTAATGTTTGAGCTCTTACACTTGACTCTGGATTGACTT
74957296 TTTTTCTGTATTTATGTCATAGTTTTCTCAAAATTG
196 TTTTTCTGTATTTATGTCATAGTTTTCTCAAAATTG
74957332 TTATCAGTAGTCCACCCTCCATACAAATATACAGAAAGGAAAGTGTGAATAGAAGTGGGAGGGTA
1 TTATCAGTAGTCCACCCTCCATACAAATATACAGAAAGGAAAGTGTGAATAGAAGTGGGAGGGTA
74957397 CTTGAAATAGATCTGACATATGCTCAGGGGGAAGGGGAAGCAGGAAGGAGTTTGATTTCTCCATT
66 CTTGAAATAGATCTGACATATGCTCAGGGGGAAGGGGAAGCAGGAAGGAGTTTGATTTCTCCATT
74957462 TTGCTTTGGATTTAGCGATTGCTATTTTAATGTTTGAGCTCTTACACTTGACTCTGGATTGACTT
131 TTGCTTTGGATTTAGCGATTGCTATTTTAATGTTTGAGCTCTTACACTTGACTCTGGATTGACTT
74957527 TTTTTCTGTATTTATGTCATAGTTTTCTCAAAATTG
196 TTTTTCTGTATTTATGTCATAGTTTTCTCAAAATTG
74957563 TTATCAGTAGTCCACCCTCCATACAAATATACAGAAAGGAAAGTGTGAATAGAAGTGGGAGGGTA
1 TTATCAGTAGTCCACCCTCCATACAAATATACAGAAAGGAAAGTGTGAATAGAAGTGGGAGGGTA
74957628 CTTGAAATAGATCTGACATATGCTCAGGGGGAAGGGGAAGCAGGAAGGAGTTTGATTTCTCCATT
66 CTTGAAATAGATCTGACATATGCTCAGGGGGAAGGGGAAGCAGGAAGGAGTTTGATTTCTCCATT
74957693 TTGCTTTGGATTTAGCGATTGCTATTTTAATGTTTGAGCTCTTACACTTGACTCTGGATTGACTT
131 TTGCTTTGGATTTAGCGATTGCTATTTTAATGTTTGAGCTCTTACACTTGACTCTGGATTGACTT
* *
74957758 TGTTTCTGTATTTATGTCATAGCTTTCTCAAAATTG
196 TTTTTCTGTATTTATGTCATAGTTTTCTCAAAATTG
74957794 TTAT
1 TTAT
74957798 ACCATTTCTC
Statistics
Matches: 926, Mismatches: 2, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
231 926 1.00
ACGTcount: A:0.28, C:0.14, G:0.23, T:0.35
Consensus pattern (231 bp):
TTATCAGTAGTCCACCCTCCATACAAATATACAGAAAGGAAAGTGTGAATAGAAGTGGGAGGGTA
CTTGAAATAGATCTGACATATGCTCAGGGGGAAGGGGAAGCAGGAAGGAGTTTGATTTCTCCATT
TTGCTTTGGATTTAGCGATTGCTATTTTAATGTTTGAGCTCTTACACTTGACTCTGGATTGACTT
TTTTTCTGTATTTATGTCATAGTTTTCTCAAAATTG
Found at i:74961640 original size:38 final size:37
Alignment explanation
Indices: 74961567--74961640 Score: 87
Period size: 38 Copynumber: 2.0 Consensus size: 37
74961557 ACCTCAAAAT
* **
74961567 TCTTTCCTAGGTCGATCCTCAACTTTTATTTTGATTA
1 TCTTTCCTAGGTCGATCCTCAACTTTCATCCTGATTA
*
74961604 TCTTTCCCTA-GTCGATCCTCTAACTTTCCTCCTGATT
1 TCTTT-CCTAGGTCGATCCTC-AACTTTCATCCTGATT
74961641 CTAGTTCGTA
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
37 15 0.48
38 16 0.52
ACGTcount: A:0.16, C:0.28, G:0.09, T:0.46
Consensus pattern (37 bp):
TCTTTCCTAGGTCGATCCTCAACTTTCATCCTGATTA
Found at i:74963718 original size:27 final size:27
Alignment explanation
Indices: 74963687--74963864 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
74963677 TAAATTGTAC
74963687 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
74963714 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
74963740 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
74963768 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
74963796 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
74963823 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
74963850 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
74963865 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:74963801 original size:82 final size:81
Alignment explanation
Indices: 74963688--74963843 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
74963678 AAATTGTACA
* *
74963688 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
74963752 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
74963769 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
74963834 TGCGAGTTGA
65 TGCGAATTGA
74963844 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:74963855 original size:82 final size:81
Alignment explanation
Indices: 74963684--74963864 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
74963674 GATTAAATTG
* *
74963684 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
74963749 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
74963765 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
74963829 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
74963847 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
74963865 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:74971463 original size:79 final size:73
Alignment explanation
Indices: 74971324--74971471 Score: 215
Period size: 79 Copynumber: 1.9 Consensus size: 73
74971314 ATAAATGTTG
* *
74971324 AATAATATTTTGCTTGCCTCTTATTGATATAAGGGTATTTATACATGATATTATTGGTACTATTA
1 AATAATATTTTGCTTGCCACTTATTGATATAAGGGTATTTATACATGATATTATTAGTACTATTA
74971389 CAACCAAT
66 CAACCAAT
*
74971397 AATAATATTTTTCTTGCCACTTATTGATATGAGTATCAGGGTATTTATACATGATATTATTAGTA
1 AATAATATTTTGCTTGCCACTTATTG--AT-A-TA--AGGGTATTTATACATGATATTATTAGTA
74971462 CTATTACAAC
60 CTATTACAAC
74971472 TCATGATAGG
Statistics
Matches: 66, Mismatches: 3, Indels: 6
0.88 0.04 0.08
Matches are distributed among these distances:
73 24 0.36
75 2 0.03
76 1 0.02
77 2 0.03
79 37 0.56
ACGTcount: A:0.33, C:0.12, G:0.12, T:0.43
Consensus pattern (73 bp):
AATAATATTTTGCTTGCCACTTATTGATATAAGGGTATTTATACATGATATTATTAGTACTATTA
CAACCAAT
Found at i:74971553 original size:17 final size:17
Alignment explanation
Indices: 74971527--74971561 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 17
74971517 ACTGATATTC
74971527 TTTGCAAATTTCAGGCT
1 TTTGCAAATTTCAGGCT
*
74971544 TTTGCGAATTTCAGGCT
1 TTTGCAAATTTCAGGCT
74971561 T
1 T
74971562 GTAGGGCACG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.20, C:0.17, G:0.20, T:0.43
Consensus pattern (17 bp):
TTTGCAAATTTCAGGCT
Found at i:74976516 original size:22 final size:22
Alignment explanation
Indices: 74976488--74976532 Score: 90
Period size: 22 Copynumber: 2.0 Consensus size: 22
74976478 TGGGAATTTG
74976488 TGTGGATGATCAGATCCCTTGC
1 TGTGGATGATCAGATCCCTTGC
74976510 TGTGGATGATCAGATCCCTTGC
1 TGTGGATGATCAGATCCCTTGC
74976532 T
1 T
74976533 CCTAGCTGTC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.18, C:0.22, G:0.27, T:0.33
Consensus pattern (22 bp):
TGTGGATGATCAGATCCCTTGC
Found at i:74976972 original size:88 final size:88
Alignment explanation
Indices: 74976820--74977264 Score: 610
Period size: 88 Copynumber: 5.1 Consensus size: 88
74976810 GATACTTTGC
* ** * *
74976820 CATAAAATTCAAAAGTTTTTAGCAAGTTATGCCTCATCATAAAATATGTCCT-ATTGAACTGCTA
1 CATAAAATTCAAGAGTTGCTAGCATGTTATGCCTCATCATAAAATATGT-CTGATTAAACTGCTA
* *
74976884 ACTTTCATTGATGTTCATACATTA
65 ACTTTCATTGATGTTCATGCATCA
* * * *
74976908 TAAAAAATTCAAGTGTTGCTAGCATGTTATGCCTCATCATAAAATATGTCTAATTAAACTGCTAA
1 CATAAAATTCAAGAGTTGCTAGCATGTTATGCCTCATCATAAAATATGTCTGATTAAACTGCTAA
*
74976973 CTTTCATTGATGTTCGTGCATCA
66 CTTTCATTGATGTTCATGCATCA
* * *
74976996 CATAAAATTCAAGAGTTGCTGGTATGTTATGCCTTATCATAAAATATGTCTGATTAAACTGCTAA
1 CATAAAATTCAAGAGTTGCTAGCATGTTATGCCTCATCATAAAATATGTCTGATTAAACTGCTAA
* *
74977061 CTTTGATCGATGTTCATGCATCA
66 CTTTCATTGATGTTCATGCATCA
*
74977084 CATAAAATTCAAGAGTTGCTAGCATGTTATGCCTCA-CTACAAAATATGTCTGATTAAACTGCTA
1 CATAAAATTCAAGAGTTGCTAGCATGTTATGCCTCATC-ATAAAATATGTCTGATTAAACTGCTA
* *
74977148 ACTTTGATCGATGTTCATGCATCA
65 ACTTTCATTGATGTTCATGCATCA
*
74977172 CATAAAATTCAAGAGTTGCTAGCATGTTATGCCTCA-CTACAAAATATGTCTGATTAAACTGCTA
1 CATAAAATTCAAGAGTTGCTAGCATGTTATGCCTCATC-ATAAAATATGTCTGATTAAACTGCTA
* **
74977236 ACCTTCATT-AGTGTTCAAACATCA
65 ACTTTCATTGA-TGTTCATGCATCA
74977260 CATAA
1 CATAA
74977265 TCTTTTCAAT
Statistics
Matches: 324, Mismatches: 30, Indels: 6
0.90 0.08 0.02
Matches are distributed among these distances:
87 4 0.01
88 320 0.99
ACGTcount: A:0.34, C:0.18, G:0.13, T:0.35
Consensus pattern (88 bp):
CATAAAATTCAAGAGTTGCTAGCATGTTATGCCTCATCATAAAATATGTCTGATTAAACTGCTAA
CTTTCATTGATGTTCATGCATCA
Found at i:74984740 original size:16 final size:16
Alignment explanation
Indices: 74984719--74984753 Score: 61
Period size: 16 Copynumber: 2.2 Consensus size: 16
74984709 AAAACATGTG
*
74984719 CTAGTAATTCTCTTAA
1 CTAGTAATTCTCTCAA
74984735 CTAGTAATTCTCTCAA
1 CTAGTAATTCTCTCAA
74984751 CTA
1 CTA
74984754 TGTGGTTTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.31, C:0.23, G:0.06, T:0.40
Consensus pattern (16 bp):
CTAGTAATTCTCTCAA
Found at i:74997627 original size:27 final size:27
Alignment explanation
Indices: 74997597--74997774 Score: 162
Period size: 27 Copynumber: 6.6 Consensus size: 27
74997587 ATATTGAGCC
* *
74997597 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
* *
74997624 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
*
74997651 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAATC-AACT
** ** *
74997679 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
* **
74997706 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAATCAACT
* * *
74997733 CGTACACTTAGTGCAACATAGTCGAA-T
1 CGCACACTTAGTGCTACATAATC-AACT
*
74997760 CGCACCCTTAGTGCT
1 CGCACACTTAGTGCT
74997775 GTACAATTTA
Statistics
Matches: 126, Mismatches: 21, Indels: 8
0.81 0.14 0.05
Matches are distributed among these distances:
27 101 0.80
28 25 0.20
ACGTcount: A:0.29, C:0.28, G:0.16, T:0.28
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:74997740 original size:82 final size:81
Alignment explanation
Indices: 74997618--74997773 Score: 206
Period size: 82 Copynumber: 1.9 Consensus size: 81
74997608 TGCTATATAA
* *
74997618 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
74997683 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * ** * *
74997700 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGTACACTTAGTGCAACATAGTCGAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
*
74997764 CCCTTAGTGC
65 CACTTAGTGC
74997774 TGTACAATTT
Statistics
Matches: 64, Mismatches: 9, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
81 15 0.23
82 49 0.77
ACGTcount: A:0.28, C:0.28, G:0.16, T:0.28
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:75006650 original size:53 final size:52
Alignment explanation
Indices: 75006583--75006843 Score: 194
Period size: 53 Copynumber: 4.9 Consensus size: 52
75006573 GGCGTGGAAG
* *
75006583 GATCATATCGTGTAAAATCATAACTGGTAGGTTA-CGCAATCATATGAAAAGAA
1 GATCATATCATGTAAGA-CATAACTGGTAGGTTATCGC-ATCATATGAAAAGAA
* * * *
75006636 GATCATATCATGTAAGACCATAATTGGTGGGTTATGGCATCATATGGAAAGAA
1 GATCATATCATGTAAGA-CATAACTGGTAGGTTATCGCATCATATGAAAAGAA
* * * **
75006689 GACCGTATCATGTATGACAGTAACTGGTAGGTTATATCATCATAT-AGAAAGAA
1 GATCATATCATGTAAGACA-TAACTGGTAGGTTATCGCATCATATGA-AAAGAA
* * * ***
75006742 G-TCCATATCGTGTAAGACTGTAA-TAGGTAGGATGATATTA-CATA-G-AAAGAA
1 GAT-CATATCATGTAAGAC-ATAACT-GGTAGG-TTATCGCATCATATGAAAAGAA
* * *
75006793 GACCATATCATGTAAGATCGTAACTGGTAGGTTATGGCATCATATGGAAAA
1 GATCATATCATGTAAGA-CATAACTGGTAGGTTATCGCATCATAT-GAAAA
75006844 ATTTAAGGAA
Statistics
Matches: 165, Mismatches: 28, Indels: 29
0.74 0.13 0.13
Matches are distributed among these distances:
50 4 0.02
51 34 0.21
52 5 0.03
53 111 0.67
54 11 0.07
ACGTcount: A:0.38, C:0.12, G:0.22, T:0.28
Consensus pattern (52 bp):
GATCATATCATGTAAGACATAACTGGTAGGTTATCGCATCATATGAAAAGAA
Found at i:75010999 original size:66 final size:66
Alignment explanation
Indices: 75010922--75011050 Score: 240
Period size: 66 Copynumber: 2.0 Consensus size: 66
75010912 CAAGTTTACC
* *
75010922 TAGCAAAACATTAACTAATGGTATTCCTTAGACGAAACAAAACAATCCTCCCTTTTAGTTTTTAA
1 TAGCAAAACATTAACTAATGGTATTCCTTAGAAGAAACAAAACAATCCTCCCTTTTACTTTTTAA
75010987 A
66 A
75010988 TAGCAAAACATTAACTAATGGTATTCCTTAGAAGAAACAAAACAATCCTCCCTTTTACTTTTT
1 TAGCAAAACATTAACTAATGGTATTCCTTAGAAGAAACAAAACAATCCTCCCTTTTACTTTTT
75011051 TAGATAAAAG
Statistics
Matches: 61, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
66 61 1.00
ACGTcount: A:0.39, C:0.20, G:0.09, T:0.33
Consensus pattern (66 bp):
TAGCAAAACATTAACTAATGGTATTCCTTAGAAGAAACAAAACAATCCTCCCTTTTACTTTTTAA
A
Found at i:75012694 original size:20 final size:21
Alignment explanation
Indices: 75012669--75012718 Score: 57
Period size: 22 Copynumber: 2.4 Consensus size: 21
75012659 TATTCAATTT
75012669 ATATTTTAT-TTTATATATAA
1 ATATTTTATATTTATATATAA
* * *
75012689 ATATTTGTTTATTTATATTTAT
1 ATATTT-TATATTTATATATAA
75012711 ATATTTTA
1 ATATTTTA
75012719 CTCATTATCG
Statistics
Matches: 24, Mismatches: 4, Indels: 3
0.77 0.13 0.10
Matches are distributed among these distances:
20 6 0.25
21 3 0.12
22 15 0.62
ACGTcount: A:0.34, C:0.00, G:0.02, T:0.64
Consensus pattern (21 bp):
ATATTTTATATTTATATATAA
Found at i:75012706 original size:22 final size:23
Alignment explanation
Indices: 75012673--75012716 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 23
75012663 CAATTTATAT
75012673 TTTATTTTATATATAAATATTTG
1 TTTATTTTATATATAAATATTTG
* *
75012696 TTTA-TTTATATTTATATATTT
1 TTTATTTTATATATAAATATTT
75012717 TACTCATTAT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
22 15 0.79
23 4 0.21
ACGTcount: A:0.32, C:0.00, G:0.02, T:0.66
Consensus pattern (23 bp):
TTTATTTTATATATAAATATTTG
Found at i:75012715 original size:14 final size:14
Alignment explanation
Indices: 75012665--75012716 Score: 54
Period size: 14 Copynumber: 3.9 Consensus size: 14
75012655 AAACTATTCA
75012665 ATTTATAT-TTTAT
1 ATTTATATATTTAT
**
75012678 -TTTATATATAAAT
1 ATTTATATATTTAT
* *
75012691 ATTTGTTTATTTAT
1 ATTTATATATTTAT
75012705 ATTTATATATTT
1 ATTTATATATTT
75012717 TACTCATTAT
Statistics
Matches: 29, Mismatches: 8, Indels: 3
0.73 0.20 0.08
Matches are distributed among these distances:
12 7 0.24
13 3 0.10
14 19 0.66
ACGTcount: A:0.33, C:0.00, G:0.02, T:0.65
Consensus pattern (14 bp):
ATTTATATATTTAT
Found at i:75019145 original size:49 final size:50
Alignment explanation
Indices: 75019084--75019315 Score: 247
Period size: 49 Copynumber: 4.7 Consensus size: 50
75019074 TGAGGTCATG
* *
75019084 TGTGTAGTACTAAGTGCAGAG-TACTATGTGTACTGGATTATT-GGTCGCA
1 TGTGTAGTACTAAGTGCAG-GCTACTATGTGTACTGGATAATTAGGTCACA
* * ** * * *
75019133 TGTGTAGTACTAAGTGTAGGCTACTATGCGTACCCGATAACTTCGATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTATGTGTACTGGATAA-TTAGGTCACA
* * ** *
75019184 TGTGTAGTACTAAGTGCAGGCTACTACGTGTA-TCAGATGGTTAGGTCACG
1 TGTGTAGTACTAAGTGCAGGCTACTATGTGTACT-GGATAATTAGGTCACA
*
75019234 TGTGTAGTACTAAGTGCAGGCTACTATGTGTACTGGATAATT-GGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTATGTGTACTGGATAATTAGGTCACA
* * *
75019283 TTTTTAGTACTAAGTGCAGGCTACTATGCGTAC
1 TGTGTAGTACTAAGTGCAGGCTACTATGTGTAC
75019316 CAGATAGCTT
Statistics
Matches: 152, Mismatches: 26, Indels: 10
0.81 0.14 0.05
Matches are distributed among these distances:
48 1 0.01
49 68 0.45
50 46 0.30
51 37 0.24
ACGTcount: A:0.25, C:0.16, G:0.27, T:0.32
Consensus pattern (50 bp):
TGTGTAGTACTAAGTGCAGGCTACTATGTGTACTGGATAATTAGGTCACA
Found at i:75021408 original size:30 final size:30
Alignment explanation
Indices: 75021374--75021434 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
75021364 TTCCCGAGCC
75021374 TAGGGGAAAAAGTGTAAATATGCAAAAGTT
1 TAGGGGAAAAAGTGTAAATATGCAAAAGTT
* * * * *
75021404 TAGGGGCAAAATTGTAATTTTGCTAAAGTT
1 TAGGGGAAAAAGTGTAAATATGCAAAAGTT
75021434 T
1 T
75021435 GAGTTAAGGA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.39, C:0.05, G:0.25, T:0.31
Consensus pattern (30 bp):
TAGGGGAAAAAGTGTAAATATGCAAAAGTT
Found at i:75022217 original size:68 final size:66
Alignment explanation
Indices: 75022100--75022314 Score: 226
Period size: 64 Copynumber: 3.3 Consensus size: 66
75022090 ATACAGATAG
* * * * * *
75022100 TATGTAGCTAGGTCACATGTATGGTGCTGA-GTGCACATCATGT-GTACAAGAGAGCTACAAGAC
1 TATGTAGCTAGGTCGCATGGATGATACT-ATGTGTACACCATGTAG-ACAAGAGAGCTACAAGAC
75022163 ATTA
64 A-TA
* **
75022167 TGATGTAGCTAGGTCGCATGGATGATACTATGTGTACACCATGTAGACAAGAGAGCT--ATGGGA
1 T-ATGTAGCTAGGTCGCATGGATGATACTATGTGTACACCATGTAGACAAGAGAGCTACAAGACA
75022230 TA
65 TA
* * **
75022232 TATATAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTAC--GGGAT
1 TATGTAGCTAGGTCGCATGGATGATACTATGTGTACACCATGTAGACAAGAGAGCTACAAGACAT
75022295 A
66 A
*
75022296 TATGTAGCTAGGTCACATG
1 TATGTAGCTAGGTCGCATG
75022315 CGTGGTTCCA
Statistics
Matches: 130, Mismatches: 13, Indels: 13
0.83 0.08 0.08
Matches are distributed among these distances:
64 76 0.58
65 3 0.02
66 3 0.02
67 2 0.02
68 45 0.35
69 1 0.01
ACGTcount: A:0.31, C:0.15, G:0.27, T:0.27
Consensus pattern (66 bp):
TATGTAGCTAGGTCGCATGGATGATACTATGTGTACACCATGTAGACAAGAGAGCTACAAGACAT
A
Found at i:75022257 original size:64 final size:64
Alignment explanation
Indices: 75022172--75022314 Score: 250
Period size: 64 Copynumber: 2.2 Consensus size: 64
75022162 CATTATGATG
*
75022172 TAGCTAGGTCGCATGGATGATACTATGTGTACACCATGTAGACAAGAGAGCTATGGGATATATA
1 TAGCTAGGTCGCATGGATGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATATATA
* *
75022236 TAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATATATG
1 TAGCTAGGTCGCATGGATGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATATATA
*
75022300 TAGCTAGGTCACATG
1 TAGCTAGGTCGCATG
75022315 CGTGGTTCCA
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
64 75 1.00
ACGTcount: A:0.31, C:0.15, G:0.28, T:0.26
Consensus pattern (64 bp):
TAGCTAGGTCGCATGGATGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATATATA
Found at i:75022356 original size:67 final size:65
Alignment explanation
Indices: 75022169--75022386 Score: 219
Period size: 64 Copynumber: 3.4 Consensus size: 65
75022159 AGACATTATG
* * * * * * *
75022169 ATGTAGCTAGGTCGCATGGAT-GATACTATGTGTACACCATGTAGACAAGAGAGCTATGGGATAT
1 ATGTAGCTAGGTCACATGGGTGGTTACAATGAGGACACCATGTAGACAAGAGAGCTACGGGATAT
* * * * * *
75022233 ATATAGCTAGGTCGCATGGGT-GATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCACATGGGTGGTTACAATGAGGACACCATGTAGACAAGAGAGCTACGGGATAT
* * * *
75022297 ATGTAGCTAGGTCACATGCGTGGTTCCAAGTGAAGGACACTATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCACATGGGTGGTTACAA-TG-AGGACACCATGTAGACAAGAGAGCTACGGGAT
*
75022362 AA
64 AT
75022364 ACTG--GCTAGGTCACATGGGTGGT
1 A-TGTAGCTAGGTCACATGGGTGGT
75022387 ACTAAGTATT
Statistics
Matches: 135, Mismatches: 15, Indels: 6
0.87 0.10 0.04
Matches are distributed among these distances:
64 79 0.59
65 4 0.03
66 20 0.15
67 30 0.22
68 2 0.01
ACGTcount: A:0.31, C:0.16, G:0.29, T:0.24
Consensus pattern (65 bp):
ATGTAGCTAGGTCACATGGGTGGTTACAATGAGGACACCATGTAGACAAGAGAGCTACGGGATAT
Found at i:75025878 original size:64 final size:64
Alignment explanation
Indices: 75025777--75025905 Score: 258
Period size: 64 Copynumber: 2.0 Consensus size: 64
75025767 TATAGCTACT
75025777 CGTTCAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAA
1 CGTTCAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAA
75025841 CGTTCAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAA
1 CGTTCAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAA
75025905 C
1 C
75025906 CCGGATTTAG
Statistics
Matches: 65, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
64 65 1.00
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (64 bp):
CGTTCAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAA
Found at i:75025900 original size:40 final size:40
Alignment explanation
Indices: 75025845--75026030 Score: 236
Period size: 40 Copynumber: 4.7 Consensus size: 40
75025835 ACTTAACGTT
*
75025845 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
*
75025885 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* *
75025925 CAAATGCCTTC-GGATCTTAGTCCGAATTTAGTAACTCGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAACTCGCA
* * * *
75025965 CGAATGCCTTC-GGATCTTAGTCCGGATTTAGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
75026006 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
75026031 CATCATTCGA
Statistics
Matches: 131, Mismatches: 11, Indels: 8
0.87 0.07 0.05
Matches are distributed among these distances:
39 3 0.02
40 116 0.89
41 12 0.09
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:75032388 original size:37 final size:37
Alignment explanation
Indices: 75032324--75032399 Score: 95
Period size: 37 Copynumber: 2.1 Consensus size: 37
75032314 TTACAAGACA
75032324 AAATCATTATAAGCCATATCTCATGGCTACAT-ACAAC
1 AAATCATTATAAGCCATATCTCATGGCTA-ATCACAAC
*
75032361 AAATCATTATAAGCCA-ATACAT-TTGGCTAATCACAAC
1 AAATCATTATAAGCCATAT-C-TCATGGCTAATCACAAC
75032398 AA
1 AA
75032400 CATTGATCAT
Statistics
Matches: 35, Mismatches: 1, Indels: 6
0.83 0.02 0.14
Matches are distributed among these distances:
36 4 0.11
37 30 0.86
38 1 0.03
ACGTcount: A:0.43, C:0.22, G:0.08, T:0.26
Consensus pattern (37 bp):
AAATCATTATAAGCCATATCTCATGGCTAATCACAAC
Found at i:75054555 original size:20 final size:21
Alignment explanation
Indices: 75054530--75054575 Score: 85
Period size: 20 Copynumber: 2.2 Consensus size: 21
75054520 TGTTTGATGT
75054530 GTGATAAACATATTTTACT-A
1 GTGATAAACATATTTTACTAA
75054550 GTGATAAACATATTTTACTAA
1 GTGATAAACATATTTTACTAA
75054571 GTGAT
1 GTGAT
75054576 TTTTAGTGAA
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
20 19 0.76
21 6 0.24
ACGTcount: A:0.39, C:0.09, G:0.13, T:0.39
Consensus pattern (21 bp):
GTGATAAACATATTTTACTAA
Found at i:75055256 original size:45 final size:45
Alignment explanation
Indices: 75055205--75055290 Score: 163
Period size: 45 Copynumber: 1.9 Consensus size: 45
75055195 ATGTAATCTA
75055205 AACTCATTGAGTTATGGTCTGAGTTCATGATATATGTGACATCCG
1 AACTCATTGAGTTATGGTCTGAGTTCATGATATATGTGACATCCG
*
75055250 AACTCATTGAGTTGTGGTCTGAGTTCATGATATATGTGACA
1 AACTCATTGAGTTATGGTCTGAGTTCATGATATATGTGACA
75055291 CATGTTTTGG
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
45 40 1.00
ACGTcount: A:0.27, C:0.14, G:0.23, T:0.36
Consensus pattern (45 bp):
AACTCATTGAGTTATGGTCTGAGTTCATGATATATGTGACATCCG
Found at i:75059372 original size:13 final size:13
Alignment explanation
Indices: 75059354--75059378 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
75059344 TCATGCATCA
75059354 CATACATTTAGGT
1 CATACATTTAGGT
75059367 CATACATTTAGG
1 CATACATTTAGG
75059379 GGTCTAGATA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
CATACATTTAGGT
Found at i:75061208 original size:17 final size:16
Alignment explanation
Indices: 75061188--75061219 Score: 55
Period size: 17 Copynumber: 1.9 Consensus size: 16
75061178 CTTAGTGTCA
75061188 TACTCTTCTACCATTTT
1 TACTCTTCTA-CATTTT
75061205 TACTCTTCTACATTT
1 TACTCTTCTACATTT
75061220 CTGTTCCACA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 5 0.33
17 10 0.67
ACGTcount: A:0.19, C:0.28, G:0.00, T:0.53
Consensus pattern (16 bp):
TACTCTTCTACATTTT
Found at i:75068168 original size:20 final size:19
Alignment explanation
Indices: 75068088--75068169 Score: 64
Period size: 20 Copynumber: 4.3 Consensus size: 19
75068078 AGATCAAACG
*
75068088 TAATCACTTTAATCTTAAAT
1 TAAT-ACTTTAATATTAAAT
*
75068108 TAATA-TTAAATCTATTAAAT
1 TAATACTTTAA--TATTAAAT
*
75068128 T--TAATTTAATATTAAGA-
1 TAATACTTTAATATTAA-AT
75068145 TAATCACTTTAATATTAAAT
1 TAAT-ACTTTAATATTAAAT
75068165 TAATA
1 TAATA
75068170 AAATACTATC
Statistics
Matches: 50, Mismatches: 4, Indels: 17
0.70 0.06 0.24
Matches are distributed among these distances:
17 7 0.14
18 7 0.14
19 8 0.16
20 28 0.56
ACGTcount: A:0.46, C:0.07, G:0.01, T:0.45
Consensus pattern (19 bp):
TAATACTTTAATATTAAAT
Found at i:75068525 original size:20 final size:19
Alignment explanation
Indices: 75068483--75068542 Score: 61
Period size: 20 Copynumber: 3.1 Consensus size: 19
75068473 GTTCAACCAG
*
75068483 TTTTTGGTCTCAGTCTCAG
1 TTTTTGGTCTCAGTCTCAA
75068502 TTTTTGGTTCTCAGT-TCCAA
1 TTTTTGG-TCTCAGTCT-CAA
*
75068522 TTTTTGATCTCAAGT-TCAA
1 TTTTTGGTCTC-AGTCTCAA
75068541 TT
1 TT
75068543 ACCCATTGGA
Statistics
Matches: 36, Mismatches: 2, Indels: 6
0.82 0.05 0.14
Matches are distributed among these distances:
19 17 0.47
20 19 0.53
ACGTcount: A:0.17, C:0.18, G:0.15, T:0.50
Consensus pattern (19 bp):
TTTTTGGTCTCAGTCTCAA
Found at i:75071032 original size:12 final size:12
Alignment explanation
Indices: 75071015--75071044 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
75071005 CCTCCCACGC
75071015 CCGTGTGCTAGG
1 CCGTGTGCTAGG
*
75071027 CCGTGTGTTAGG
1 CCGTGTGCTAGG
75071039 CCGTGT
1 CCGTGT
75071045 CAAACCTATA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.07, C:0.23, G:0.40, T:0.30
Consensus pattern (12 bp):
CCGTGTGCTAGG
Found at i:75075581 original size:28 final size:28
Alignment explanation
Indices: 75075515--75075667 Score: 220
Period size: 28 Copynumber: 5.5 Consensus size: 28
75075505 ATATTAAGTC
* * *
75075515 CGCACACTCAGTGCTAGATAATC-AGCT
1 CGCACACTTAGTGCTACATAATCAAACT
*
75075542 CGCACACCTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAATCAAACT
* *
75075570 CGTACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAATCAAACT
75075598 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAATCAAACT
* *
75075626 CGCACACTTAGTGCTACATAGTC-AATT
1 CGCACACTTAGTGCTACATAATCAAACT
75075653 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
75075668 GCACAATTTA
Statistics
Matches: 114, Mismatches: 11, Indels: 2
0.90 0.09 0.02
Matches are distributed among these distances:
27 38 0.33
28 76 0.67
ACGTcount: A:0.31, C:0.29, G:0.14, T:0.25
Consensus pattern (28 bp):
CGCACACTTAGTGCTACATAATCAAACT
Found at i:75075619 original size:83 final size:83
Alignment explanation
Indices: 75075515--75075667 Score: 227
Period size: 83 Copynumber: 1.8 Consensus size: 83
75075505 ATATTAAGTC
* * *
75075515 CGCACACTCAGTGCTAGATAATC-AGCTCGCACACCTAGTGCTACATAATCAAACTCGTACACTT
1 CGCACACTCAGTGCTACATAATCAAACTCGCACACCTAGTGCTACATAATC-AACTCGCACACTT
75075579 AGTGCTACATAGTCAAACT
65 AGTGCTACATAGTCAAACT
* * * *
75075598 CGCACACTTAGTGCTACATAATCAAACTCGCACACTTAGTGCTACATAGTCAATTCGCACACTTA
1 CGCACACTCAGTGCTACATAATCAAACTCGCACACCTAGTGCTACATAATCAACTCGCACACTTA
75075663 GTGCT
66 GTGCT
75075668 GCACAATTTA
Statistics
Matches: 62, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
83 38 0.61
84 24 0.39
ACGTcount: A:0.31, C:0.29, G:0.14, T:0.25
Consensus pattern (83 bp):
CGCACACTCAGTGCTACATAATCAAACTCGCACACCTAGTGCTACATAATCAACTCGCACACTTA
GTGCTACATAGTCAAACT
Found at i:75075686 original size:56 final size:55
Alignment explanation
Indices: 75075514--75075692 Score: 223
Period size: 56 Copynumber: 3.2 Consensus size: 55
75075504 CATATTAAGT
* * * * *
75075514 CCGCACACTCAGTGCTAGATAATCAGCTCGCACACCTAGTGCTACATAATCAAAC
1 CCGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAATCAAAC
* *
75075569 TCGTACACTTAGTGCTACATAGTCAAACTCGCACACTTAGTGCTACATAATCAAAC
1 CCGCACACTTAGTGCTACATAGTC-AACTCGCACACTTAGTGCTACATAATCAAAC
* * * * *
75075625 TCGCACACTTAGTGCTACATAGTCAATTCGCACACTTAGTGCTGCACAATTTAAAC
1 CCGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAA-TCAAAC
*
75075681 CCGCACTCTTAG
1 CCGCACACTTAG
75075693 CGCCAATCTC
Statistics
Matches: 108, Mismatches: 14, Indels: 3
0.86 0.11 0.02
Matches are distributed among these distances:
55 41 0.38
56 67 0.62
ACGTcount: A:0.31, C:0.30, G:0.14, T:0.25
Consensus pattern (55 bp):
CCGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAATCAAAC
Found at i:75079039 original size:21 final size:20
Alignment explanation
Indices: 75079005--75079043 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 20
75078995 AAACTTTTAT
75079005 ATCTATCAACAAACATTCATA
1 ATCTATCAACAAAC-TTCATA
* *
75079026 ATCTATTAAGAAACTTCA
1 ATCTATCAACAAACTTCA
75079044 AAATATGCAT
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 4 0.25
21 12 0.75
ACGTcount: A:0.46, C:0.21, G:0.03, T:0.31
Consensus pattern (20 bp):
ATCTATCAACAAACTTCATA
Found at i:75090213 original size:93 final size:93
Alignment explanation
Indices: 75090054--75090225 Score: 299
Period size: 93 Copynumber: 1.8 Consensus size: 93
75090044 GCCCATAAGT
* * *
75090054 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATGAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
75090119 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
* *
75090147 GAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
75090212 CGAGTTCGGATGCC
66 CGAGTTCGGATGCC
75090226 CAAATATCCC
Statistics
Matches: 74, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.27, C:0.29, G:0.22, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:75090221 original size:46 final size:46
Alignment explanation
Indices: 75090046--75090221 Score: 214
Period size: 46 Copynumber: 3.8 Consensus size: 46
75090036 TGTAACCCGC
* * * *
75090046 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
* * *
75090092 CCATGAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-ATTTGCAT
* *
75090142 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
75090185 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
75090222 TGCCCAAATA
Statistics
Matches: 110, Mismatches: 13, Indels: 14
0.80 0.09 0.10
Matches are distributed among these distances:
43 6 0.05
44 2 0.02
45 2 0.02
46 63 0.57
47 29 0.26
48 2 0.02
49 2 0.02
50 4 0.04
ACGTcount: A:0.28, C:0.28, G:0.22, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
Found at i:75090240 original size:46 final size:46
Alignment explanation
Indices: 75090097--75090240 Score: 136
Period size: 46 Copynumber: 3.1 Consensus size: 46
75090087 CGCATCCATG
* * *
75090097 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATCTC
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCA--TATATCCC
* * *
75090145 A-CGAACTCGGACTCAACTCAACGAGTTCGGA----CATTTGCATCCATA
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCATAT--ATCC--C
*
75090190 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAAATATCCC
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCATATATCCC
75090236 AGTGA
1 AGTGA
75090241 CATGTCACTC
Statistics
Matches: 77, Mismatches: 10, Indels: 20
0.72 0.09 0.19
Matches are distributed among these distances:
41 1 0.01
43 4 0.05
45 1 0.01
46 34 0.44
47 29 0.38
48 5 0.06
50 3 0.04
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.22
Consensus pattern (46 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCATATATCCC
Found at i:75094598 original size:12 final size:13
Alignment explanation
Indices: 75094569--75094609 Score: 55
Period size: 14 Copynumber: 3.0 Consensus size: 13
75094559 TGATATTTAC
*
75094569 ATATAAAAAATTAT
1 ATATAAAAAA-AAT
75094583 ATATAAAGAAAAAT
1 ATATAAA-AAAAAT
75094597 ATATAAAAAAAAT
1 ATATAAAAAAAAT
75094610 TAGTTGAAAT
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
13 6 0.24
14 16 0.64
15 3 0.12
ACGTcount: A:0.71, C:0.00, G:0.02, T:0.27
Consensus pattern (13 bp):
ATATAAAAAAAAT
Found at i:75096499 original size:48 final size:48
Alignment explanation
Indices: 75096437--75096623 Score: 259
Period size: 48 Copynumber: 3.9 Consensus size: 48
75096427 CACAGTGGTT
*
75096437 TATGTGAGCTAGTGTAAGACCATGTATGGGACATGGCATCGGCGTTGA
1 TATGTGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCGTTGA
* * **
75096485 TATGTGAG-TCAGTGTAAGACCCTGTCTGAGACATGGCATCGATGTTGA
1 TATGTGAGCT-AGTGTAAGACCATGTCTGGGACATGGCATCGGCGTTGA
* *
75096533 TATGTGAGCCAGTGTAAGGCCATGTCTGGGACATGGCATCGGCGTTGA
1 TATGTGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCGTTGA
* * * *
75096581 TATATGTGCTAGTGTAAGACCATGTCCGGGACGTGGCATCGGC
1 TATGTGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGC
75096624 ACTGACATGA
Statistics
Matches: 120, Mismatches: 17, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
47 1 0.01
48 119 0.99
ACGTcount: A:0.23, C:0.18, G:0.33, T:0.27
Consensus pattern (48 bp):
TATGTGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCGTTGA
Found at i:75098075 original size:37 final size:37
Alignment explanation
Indices: 75098025--75098103 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
75098015 TTATTACGAA
* * *
75098025 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
75098062 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
75098099 GTCTT
1 GTCTT
75098104 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:75098399 original size:49 final size:49
Alignment explanation
Indices: 75098222--75099399 Score: 2155
Period size: 49 Copynumber: 24.2 Consensus size: 49
75098212 CCCTTCGGGA
* * * * *
75098222 CTTATCAC--ATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATTTATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
75098269 CCTGTCACATA--TATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATTTATACACTTTCACATTCATCACATCGGCCATTAGGC
75098316 CTTATCACATA--TATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATTTATACACTTTCACATTCATCACATCGGCCATTAGGC
75098363 CTTATCACATATTTATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATTTATACACTTTCACATTCATCACATCGGCCATTAGGC
75098412 CTTATCACATATTTATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATTTATACACTTTCACATTCATCACATCGGCCATTAGGC
75098461 CTTATCACATATTTATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATTTATACACTTTCACATTCATCACATCGGCCATTAGGC
75098510 CTTATCACATATTTATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATTTATACACTTTCACATTCATCACATCGGCCATTAGGC
75098559 CTTATCACATATTTATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATTTATACACTTTCACATTCATCACATCGGCCATTAGGC
75098608 CTTATCACATATTTATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATTTATACACTTTCACATTCATCACATCGGCCATTAGGC
75098657 CTTATCACATATTTATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATTTATACACTTTCACATTCATCACATCGGCCATTAGGC
75098706 CTTATCACATATTTATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATTTATACACTTTCACATTCATCACATCGGCCATTAGGC
75098755 CTTATCACATATTTATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATTTATACACTTTCACATTCATCACATCGGCCATTAGGC
75098804 CTTATCACATATTTATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATTTATACACTTTCACATTCATCACATCGGCCATTAGGC
75098853 CTTATCACATATTTATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATTTATACACTTTCACATTCATCACATCGGCCATTAGGC
75098902 CTTATCACATATTTATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATTTATACACTTTCACATTCATCACATCGGCCATTAGGC
75098951 CTTATCACATATTTATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATTTATACACTTTCACATTCATCACATCGGCCATTAGGC
75099000 CTTATCACATATTTATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATTTATACACTTTCACATTCATCACATCGGCCATTAGGC
75099049 CTTATCACATATTTATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATTTATACACTTTCACATTCATCACATCGGCCATTAGGC
75099098 CTTATCACATATTTATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATTTATACACTTTCACATTCATCACATCGGCCATTAGGC
75099147 CTTATATCACATA--TATACACTTTCACATTCATCACATCGGCCATTAGGC
1 C-T-TATCACATATTTATACACTTTCACATTCATCACATCGGCCATTAGGC
75099196 CTTATCACATATTTATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATTTATACACTTTCACATTCATCACATCGGCCATTAGGC
** *
75099245 CTTATCACATATAAATACACTTTCACATTCATCAGATCGGCCATTAGGC
1 CTTATCACATATTTATACACTTTCACATTCATCACATCGGCCATTAGGC
75099294 CTTATCACATA--TATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATTTATACACTTTCACATTCATCACATCGGCCATTAGGC
75099341 CTTATCACATA--TATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATTTATACACTTTCACATTCATCACATCGGCCATTAGGC
*
75099388 CTTATCTCATAT
1 CTTATCACATAT
75099400 ATGCATGTTC
Statistics
Matches: 1107, Mismatches: 15, Indels: 17
0.97 0.01 0.01
Matches are distributed among these distances:
47 193 0.17
48 1 0.00
49 903 0.82
50 1 0.00
51 9 0.01
ACGTcount: A:0.29, C:0.29, G:0.08, T:0.34
Consensus pattern (49 bp):
CTTATCACATATTTATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:75102165 original size:29 final size:28
Alignment explanation
Indices: 75102129--75102206 Score: 104
Period size: 29 Copynumber: 2.7 Consensus size: 28
75102119 TCATGAGATT
75102129 GGCACTAAGTGTGCGGGTTTAAATTGTACA
1 GGCACTAAGTGTGCGGGTTTAAA--GTACA
*
75102159 -GCACTAAGTGTGCGAGTTTAAAGTACA
1 GGCACTAAGTGTGCGGGTTTAAAGTACA
75102186 TGGCACTAAGTGTGCGCGGTT
1 -GGCACTAAGTGTGCG-GGTT
75102207 GATTATTGAG
Statistics
Matches: 43, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
27 5 0.12
29 35 0.81
30 3 0.07
ACGTcount: A:0.26, C:0.15, G:0.31, T:0.28
Consensus pattern (28 bp):
GGCACTAAGTGTGCGGGTTTAAAGTACA
Found at i:75102424 original size:174 final size:174
Alignment explanation
Indices: 75102159--75102660 Score: 932
Period size: 174 Copynumber: 2.9 Consensus size: 174
75102149 AAATTGTACA
*
75102159 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTGAGCACTATG
1 GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTGAGCACTATG
75102224 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
75102289 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
131 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
*
75102333 GCACTAAGTGTGTGAGTTTAAAGTGCATGGCACTAAGTGTGCGCGGTTGATTATTGAGCACTATG
1 GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTGAGCACTATG
* *
75102398 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACCTTAAGGGTGCGCCTTTACCGAGTCGA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
75102463 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
131 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
*
75102507 GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTGAGCACTATG
* * *
75102572 TGTGCGAACTCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
75102637 TTTTGGACAGCGGAAAAGGTAAGT
131 TTTTGGACAGCGGAAAAGGTAAGT
75102661 ACCTTGAGTT
Statistics
Matches: 317, Mismatches: 11, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
174 317 1.00
ACGTcount: A:0.29, C:0.15, G:0.25, T:0.31
Consensus pattern (174 bp):
GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTGAGCACTATG
TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
Found at i:75106172 original size:21 final size:21
Alignment explanation
Indices: 75106135--75106174 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
75106125 AATCATTAAA
*
75106135 TTGATGTTATGATATGTGTCT
1 TTGATGTTATGAAATGTGTCT
75106156 TTGATGTGTAT-AAATGTGT
1 TTGATGT-TATGAAATGTGT
75106175 GAGTGGTTAA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
21 14 0.82
22 3 0.18
ACGTcount: A:0.23, C:0.03, G:0.25, T:0.50
Consensus pattern (21 bp):
TTGATGTTATGAAATGTGTCT
Found at i:75107156 original size:92 final size:92
Alignment explanation
Indices: 75106999--75107183 Score: 361
Period size: 92 Copynumber: 2.0 Consensus size: 92
75106989 ATTTTTATAA
75106999 AGTTTGTTTTCATTAGGAATTTAAGTAAATAGTTTATGGTTTTGGTAGTTGTTAGAAAATATTGT
1 AGTTTGTTTTCATTAGGAATTTAAGTAAATAGTTTATGGTTTTGGTAGTTGTTAGAAAATATTGT
*
75107064 TATTTAGAGGATATTTTGTTTTGTGTC
66 TATTTAGAGGATATTTTGTTATGTGTC
75107091 AGTTTGTTTTCATTAGGAATTTAAGTAAATAGTTTATGGTTTTGGTAGTTGTTAGAAAATATTGT
1 AGTTTGTTTTCATTAGGAATTTAAGTAAATAGTTTATGGTTTTGGTAGTTGTTAGAAAATATTGT
75107156 TATTTAGAGGATATTTTGTTATGTGTC
66 TATTTAGAGGATATTTTGTTATGTGTC
75107183 A
1 A
75107184 TATAAAGAGA
Statistics
Matches: 92, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
92 92 1.00
ACGTcount: A:0.27, C:0.02, G:0.22, T:0.49
Consensus pattern (92 bp):
AGTTTGTTTTCATTAGGAATTTAAGTAAATAGTTTATGGTTTTGGTAGTTGTTAGAAAATATTGT
TATTTAGAGGATATTTTGTTATGTGTC
Found at i:75113466 original size:250 final size:250
Alignment explanation
Indices: 75113025--75113524 Score: 955
Period size: 250 Copynumber: 2.0 Consensus size: 250
75113015 AAGGCGTCCG
75113025 CAACCACATTAGCCTTTCCCGGGTGGTAATCAATGACAAGCTCGTAATCTTTCAACAACTCAAGC
1 CAACCACATTAGCCTTTCCCGGGTGGTAATCAATGACAAGCTCGTAATCTTTCAACAACTCAAGC
75113090 CAACGTCTTTGTCGCAGATTTAAGTCTCTTTGAGTCATCAAATTTTTGAGACTTTTGTGATCCGA
66 CAACGTCTTTGTCGCAGATTTAAGTCTCTTTGAGTCATCAAATTTTTGAGACTTTTGTGATCCGA
75113155 AAATACATGGCACTTTTCACCAAATAAGTAATGTCGCCATACTTTTAAAGCAAATACGATGGCAG
131 AAATACATGGCACTTTTCACCAAATAAGTAATGTCGCCATACTTTTAAAGCAAATACGATGGCAG
* * *
75113220 CTAGTTCAAGATCATGGGTCGGATAATTTTTCTCATGTGGCTTTAATTGTCTCGA
196 CTAGTTCAAGATCATGGGTCGGATAATTTCTCTCATGTAGCTTCAATTGTCTCGA
75113275 CAACCACATTAGCCTTTCCCGGGTGGTAATCAATGACAAGCTCGTAATCTTTCAACAACTCAAGC
1 CAACCACATTAGCCTTTCCCGGGTGGTAATCAATGACAAGCTCGTAATCTTTCAACAACTCAAGC
75113340 CAACGTCTTTGTCGCAGATTTAAGTCTCTTTGAGTCATCAAATTTTTGAGACTTTTGTGATCCGA
66 CAACGTCTTTGTCGCAGATTTAAGTCTCTTTGAGTCATCAAATTTTTGAGACTTTTGTGATCCGA
75113405 AAATACATGGCACTTTTCACCAAATAAGTAATGTCGCCATACTTTTAAAGCAAATACGATGGCAG
131 AAATACATGGCACTTTTCACCAAATAAGTAATGTCGCCATACTTTTAAAGCAAATACGATGGCAG
* *
75113470 CTAGTTCGAGATCATGGGTCGGATAATTTCTCTCGTGTAGCTTCAATTGTCTCGA
196 CTAGTTCAAGATCATGGGTCGGATAATTTCTCTCATGTAGCTTCAATTGTCTCGA
75113525 TGCATAGGCC
Statistics
Matches: 245, Mismatches: 5, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
250 245 1.00
ACGTcount: A:0.29, C:0.22, G:0.18, T:0.32
Consensus pattern (250 bp):
CAACCACATTAGCCTTTCCCGGGTGGTAATCAATGACAAGCTCGTAATCTTTCAACAACTCAAGC
CAACGTCTTTGTCGCAGATTTAAGTCTCTTTGAGTCATCAAATTTTTGAGACTTTTGTGATCCGA
AAATACATGGCACTTTTCACCAAATAAGTAATGTCGCCATACTTTTAAAGCAAATACGATGGCAG
CTAGTTCAAGATCATGGGTCGGATAATTTCTCTCATGTAGCTTCAATTGTCTCGA
Found at i:75114304 original size:70 final size:70
Alignment explanation
Indices: 75114221--75114361 Score: 273
Period size: 70 Copynumber: 2.0 Consensus size: 70
75114211 ATCTCAAATC
*
75114221 TATTTTTGAGAACACTAAGGCTCCCTTCAGTTGGTCGAACAAATCATCGATACGCGGTAACGGAT
1 TATTTTTGAGAACACTAAGGCTCCCTTCAGTTGGTCGAACAAATCATCAATACGCGGTAACGGAT
75114286 ATTTG
66 ATTTG
75114291 TATTTTTGAGAACACTAAGGCTCCCTTCAGTTGGTCGAACAAATCATCAATACGCGGTAACGGAT
1 TATTTTTGAGAACACTAAGGCTCCCTTCAGTTGGTCGAACAAATCATCAATACGCGGTAACGGAT
75114356 ATTTG
66 ATTTG
75114361 T
1 T
75114362 TCTTTATCGT
Statistics
Matches: 70, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
70 70 1.00
ACGTcount: A:0.29, C:0.20, G:0.21, T:0.30
Consensus pattern (70 bp):
TATTTTTGAGAACACTAAGGCTCCCTTCAGTTGGTCGAACAAATCATCAATACGCGGTAACGGAT
ATTTG
Found at i:75115003 original size:58 final size:58
Alignment explanation
Indices: 75114933--75115048 Score: 205
Period size: 58 Copynumber: 2.0 Consensus size: 58
75114923 AGCATCAAGT
* *
75114933 CCGCCGGAAAACAGAAACCTCGAATTTCTAGGGGACATTTCTTACACACTTTGTCGAC
1 CCGCCGGAAAACAGAAACCTCGAATTTCCAGGGGACATTTCTCACACACTTTGTCGAC
*
75114991 CCGCCGGAAAACAGGAACCTCGAATTTCCAGGGGACATTTCTCACACACTTTGTCGAC
1 CCGCCGGAAAACAGAAACCTCGAATTTCCAGGGGACATTTCTCACACACTTTGTCGAC
75115049 AAGCACGTAA
Statistics
Matches: 55, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
58 55 1.00
ACGTcount: A:0.28, C:0.29, G:0.20, T:0.22
Consensus pattern (58 bp):
CCGCCGGAAAACAGAAACCTCGAATTTCCAGGGGACATTTCTCACACACTTTGTCGAC
Found at i:75116380 original size:72 final size:72
Alignment explanation
Indices: 75116258--75116401 Score: 261
Period size: 72 Copynumber: 2.0 Consensus size: 72
75116248 TTATTTGGTC
*
75116258 AGTTACCGGAGGTATTGTAGGTGCGGGGGTGGTATTTGTCGGGAATGGAGGTTGTGGAACAGCCG
1 AGTTACCGGAGGTATTGTAGGTGCGGGGGTGGTATTAGTCGGGAATGGAGGTTGTGGAACAGCCG
75116323 TATTAGT
66 TATTAGT
* *
75116330 AGTTTCCGGAGGTATTGTAGGTGCGGGGGTTGTATTAGTCGGGAATGGAGGTTGTGGAACAGCCG
1 AGTTACCGGAGGTATTGTAGGTGCGGGGGTGGTATTAGTCGGGAATGGAGGTTGTGGAACAGCCG
75116395 TATTAGT
66 TATTAGT
75116402 TTGAATGTAT
Statistics
Matches: 69, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
72 69 1.00
ACGTcount: A:0.19, C:0.10, G:0.41, T:0.30
Consensus pattern (72 bp):
AGTTACCGGAGGTATTGTAGGTGCGGGGGTGGTATTAGTCGGGAATGGAGGTTGTGGAACAGCCG
TATTAGT
Found at i:75118501 original size:39 final size:39
Alignment explanation
Indices: 75118443--75118560 Score: 132
Period size: 40 Copynumber: 3.0 Consensus size: 39
75118433 TAACCCAGAT
*
75118443 TTAGTAACTCGCACCAATGCCTTCGGGCTTAGCCCGGAA
1 TTAGTAACTCGCACAAATGCCTTCGGGCTTAGCCCGGAA
* *
75118482 TTAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGG-A
1 TTAGTAACTCGCACAAATGCCTTCGG-GCTTAGCCCGGAA
* * *
75118521 TATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGCCCGGA
1 T-TAGTAAC-TCGCACAAATGCCTTCGGG-CTTAGCCCGGA
75118561 CATCATTCAA
Statistics
Matches: 66, Mismatches: 8, Indels: 8
0.80 0.10 0.10
Matches are distributed among these distances:
39 27 0.41
40 31 0.47
41 8 0.12
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (39 bp):
TTAGTAACTCGCACAAATGCCTTCGGGCTTAGCCCGGAA
Found at i:75137370 original size:90 final size:90
Alignment explanation
Indices: 75137217--75137397 Score: 353
Period size: 90 Copynumber: 2.0 Consensus size: 90
75137207 TTGCTCTCGG
*
75137217 GGCACAATAGAAGTCAGAGTACTCCACCAATAGTAGGCAGAATCGCGTAACAAGGAGATAGTACA
1 GGCACAACAGAAGTCAGAGTACTCCACCAATAGTAGGCAGAATCGCGTAACAAGGAGATAGTACA
75137282 CTTTAGGCATTCATCAGGTGTACAA
66 CTTTAGGCATTCATCAGGTGTACAA
75137307 GGCACAACAGAAGTCAGAGTACTCCACCAATAGTAGGCAGAATCGCGTAACAAGGAGATAGTACA
1 GGCACAACAGAAGTCAGAGTACTCCACCAATAGTAGGCAGAATCGCGTAACAAGGAGATAGTACA
75137372 CTTTAGGCATTCATCAGGTGTACAA
66 CTTTAGGCATTCATCAGGTGTACAA
75137397 G
1 G
75137398 ATAGCTCATC
Statistics
Matches: 90, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
90 90 1.00
ACGTcount: A:0.36, C:0.20, G:0.24, T:0.19
Consensus pattern (90 bp):
GGCACAACAGAAGTCAGAGTACTCCACCAATAGTAGGCAGAATCGCGTAACAAGGAGATAGTACA
CTTTAGGCATTCATCAGGTGTACAA
Found at i:75139447 original size:82 final size:81
Alignment explanation
Indices: 75139296--75139528 Score: 335
Period size: 82 Copynumber: 2.9 Consensus size: 81
75139286 ATTACCACAA
* ** * *
75139296 GCACAATTGCCTTCGGGTCTTAACCCGG-GCATAGCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATAATATCAACTCGCACAAATGCCTTCGGGTCTTAGC
*
75139360 CCGGATATATCAACTT
66 CCGGATATATCAACTC
*
75139376 GCACAATTGCCTTCGGGTCTTAGCCCGGATATATATCAACTCGCACAAATGCCTGCGGGTCTTAG
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATA-ATATCAACTCGCACAAATGCCTTCGGGTCTTAG
75139441 CCCGGATATATCAACTC
65 CCCGGATATATCAACTC
* * * * *
75139458 GCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATC-ACTAGCACAATTGCCTTCGGGACTTAGC
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATAATATCAACTCGCACAAATGCCTTCGGGTCTTAGC
75139522 CCGGATA
66 CCGGATA
75139529 AAATTCAAAT
Statistics
Matches: 138, Mismatches: 13, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
80 58 0.42
81 4 0.03
82 76 0.55
ACGTcount: A:0.24, C:0.29, G:0.22, T:0.24
Consensus pattern (81 bp):
GCACAATTGCCTTCGGGTCTTAGCCCGGATAATATCAACTCGCACAAATGCCTTCGGGTCTTAGC
CCGGATATATCAACTC
Found at i:75139513 original size:122 final size:122
Alignment explanation
Indices: 75139296--75139528 Score: 360
Period size: 122 Copynumber: 1.9 Consensus size: 122
75139286 ATTACCACAA
* * * *
75139296 GCACAATTGCCTTCGGGTCTTAACCCGGGCATAGCAACTCGCACGAATGCCTTCGGGTCTTAGCC
1 GCACAAATGCCTGCGGGTCTTAACCCGGACATAGCAACTCGCACAAATGCCTTCGGGTCTTAGCC
* * *
75139361 CGGATATATCAACTTGCACAATTGCCTTCGGGTCTTAGCCCGGATATATATCAACTC
66 CGGATAAATCAACTAGCACAATTGCCTTCGGGACTTAGCCCGGATATATATCAACTC
* * *
75139418 GCACAAATGCCTGCGGGTCTTAGCCCGGATATATCAACTCGCACAAATGCCTTCGGGTCTTAGCC
1 GCACAAATGCCTGCGGGTCTTAACCCGGACATAGCAACTCGCACAAATGCCTTCGGGTCTTAGCC
75139483 CGGATAAAATC-ACTAGCACAATTGCCTTCGGGACTTAGCCCGGATA
66 CGGAT-AAATCAACTAGCACAATTGCCTTCGGGACTTAGCCCGGATA
75139529 AAATTCAAAT
Statistics
Matches: 100, Mismatches: 10, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
122 96 0.96
123 4 0.04
ACGTcount: A:0.24, C:0.29, G:0.22, T:0.24
Consensus pattern (122 bp):
GCACAAATGCCTGCGGGTCTTAACCCGGACATAGCAACTCGCACAAATGCCTTCGGGTCTTAGCC
CGGATAAATCAACTAGCACAATTGCCTTCGGGACTTAGCCCGGATATATATCAACTC
Found at i:75139532 original size:40 final size:41
Alignment explanation
Indices: 75139296--75139529 Score: 316
Period size: 40 Copynumber: 5.8 Consensus size: 41
75139286 ATTACCACAA
* ** *
75139296 GCACAATTGCCTTCGGGTCTTAACCCGG-GCATAGCAACTC
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATAATATCAACTC
*
75139336 GCACGAA-TGCCTTCGGGTCTTAGCCCGGAT-ATATCAACTT
1 GCAC-AATTGCCTTCGGGTCTTAGCCCGGATAATATCAACTC
75139376 GCACAATTGCCTTCGGGTCTTAGCCCGGATATATATCAACTC
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATA-ATATCAACTC
* *
75139418 GCACAAATGCCTGCGGGTCTTAGCCCGGAT-ATATCAACTC
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATAATATCAACTC
* * *
75139458 GCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATC-ACTA
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATAATATCAACTC
*
75139498 GCACAATTGCCTTCGGGACTTAGCCCGGATAA
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATAA
75139530 AATTCAAATG
Statistics
Matches: 176, Mismatches: 12, Indels: 12
0.88 0.06 0.06
Matches are distributed among these distances:
39 2 0.01
40 131 0.74
41 6 0.03
42 37 0.21
ACGTcount: A:0.25, C:0.29, G:0.22, T:0.24
Consensus pattern (41 bp):
GCACAATTGCCTTCGGGTCTTAGCCCGGATAATATCAACTC
Found at i:75148485 original size:20 final size:20
Alignment explanation
Indices: 75148460--75148501 Score: 75
Period size: 20 Copynumber: 2.1 Consensus size: 20
75148450 AATCGCACAC
*
75148460 TTAGTGTCAAATACCATTGA
1 TTAGTGCCAAATACCATTGA
75148480 TTAGTGCCAAATACCATTGA
1 TTAGTGCCAAATACCATTGA
75148500 TT
1 TT
75148502 TATCATCGTA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.33, C:0.17, G:0.14, T:0.36
Consensus pattern (20 bp):
TTAGTGCCAAATACCATTGA
Found at i:75149815 original size:28 final size:26
Alignment explanation
Indices: 75149775--75149835 Score: 77
Period size: 26 Copynumber: 2.3 Consensus size: 26
75149765 TTAAAAGAAA
* *
75149775 GCCTTTGTAGCAATATCTGTCAAATGAT
1 GCCTTTATAGC-A-ATCTATCAAATGAT
*
75149803 GCCTTTATGGCAATCTATCAAATGAT
1 GCCTTTATAGCAATCTATCAAATGAT
75149829 GCCTTTA
1 GCCTTTA
75149836 GGGTAAGACT
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
26 20 0.67
27 1 0.03
28 9 0.30
ACGTcount: A:0.28, C:0.20, G:0.16, T:0.36
Consensus pattern (26 bp):
GCCTTTATAGCAATCTATCAAATGAT
Found at i:75151018 original size:18 final size:19
Alignment explanation
Indices: 75150990--75151026 Score: 58
Period size: 18 Copynumber: 2.0 Consensus size: 19
75150980 CAATATTTTC
75150990 CTTTAGAGCTTACTAAGTT
1 CTTTAGAGCTTACTAAGTT
*
75151009 CTTT-GAGCTTACTTAGTT
1 CTTTAGAGCTTACTAAGTT
75151027 ACCTTTCCTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 13 0.76
19 4 0.24
ACGTcount: A:0.22, C:0.16, G:0.16, T:0.46
Consensus pattern (19 bp):
CTTTAGAGCTTACTAAGTT
Found at i:75153446 original size:21 final size:21
Alignment explanation
Indices: 75153422--75153491 Score: 70
Period size: 21 Copynumber: 3.2 Consensus size: 21
75153412 TGATATGAAC
75153422 TCATTGAGTTGTGGTCTGAGT
1 TCATTGAGTTGTGGTCTGAGT
* * *
75153443 TCA-TGATATATGTGACATCTGAGC
1 TCATTGA-GT-TGTG--GTCTGAGT
75153467 TCATTGAGTTGTGGTCTGAGT
1 TCATTGAGTTGTGGTCTGAGT
75153488 TCAT
1 TCAT
75153492 GATGTATACG
Statistics
Matches: 38, Mismatches: 6, Indels: 10
0.70 0.11 0.19
Matches are distributed among these distances:
20 3 0.08
21 14 0.37
22 4 0.11
23 4 0.11
24 10 0.26
25 3 0.08
ACGTcount: A:0.20, C:0.13, G:0.27, T:0.40
Consensus pattern (21 bp):
TCATTGAGTTGTGGTCTGAGT
Found at i:75156448 original size:20 final size:21
Alignment explanation
Indices: 75156382--75156450 Score: 95
Period size: 21 Copynumber: 3.3 Consensus size: 21
75156372 TCACTTCGTT
75156382 TCTTTTTGTCCAAGTTACTTC
1 TCTTTTTGTCCAAGTTACTTC
*
75156403 TCTTTTTGTCCAAGTTGCTTC
1 TCTTTTTGTCCAAGTTACTTC
* * *
75156424 TCTTTTTGTCTAACTCACTTC
1 TCTTTTTGTCCAAGTTACTTC
75156445 -CTTTTT
1 TCTTTTT
75156451 TCTTTGTGAG
Statistics
Matches: 43, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
20 6 0.14
21 37 0.86
ACGTcount: A:0.12, C:0.25, G:0.09, T:0.55
Consensus pattern (21 bp):
TCTTTTTGTCCAAGTTACTTC
Found at i:75157655 original size:13 final size:14
Alignment explanation
Indices: 75157628--75157660 Score: 50
Period size: 13 Copynumber: 2.4 Consensus size: 14
75157618 CATATTAACT
75157628 TTTAATAAAAACCA
1 TTTAATAAAAACCA
*
75157642 TTTAA-AAAATCCA
1 TTTAATAAAAACCA
75157655 TTTAAT
1 TTTAAT
75157661 GCCCATTTAA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
13 12 0.71
14 5 0.29
ACGTcount: A:0.52, C:0.12, G:0.00, T:0.36
Consensus pattern (14 bp):
TTTAATAAAAACCA
Found at i:75160602 original size:49 final size:49
Alignment explanation
Indices: 75160520--75160707 Score: 223
Period size: 49 Copynumber: 3.8 Consensus size: 49
75160510 TGAGGTCACG
*
75160520 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATAATTGGTCGCA
* * * * * * * * *
75160569 TTTGAAGTACTAAGTGTAGGCTACTATGCGTACCCGAAAACTGTGATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATAA-T-TGGTCGCA
* *
75160620 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTATTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATAATTGGTCGCA
* * *
75160669 TGTGTAGTACTAAGTGCAAGTTACTATGCGTACCAGATA
1 TGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATA
75160708 GTTCGGCTAC
Statistics
Matches: 111, Mismatches: 26, Indels: 4
0.79 0.18 0.03
Matches are distributed among these distances:
49 72 0.65
50 2 0.02
51 37 0.33
ACGTcount: A:0.28, C:0.18, G:0.25, T:0.29
Consensus pattern (49 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATAATTGGTCGCA
Found at i:75160694 original size:100 final size:100
Alignment explanation
Indices: 75160515--75160702 Score: 322
Period size: 100 Copynumber: 1.9 Consensus size: 100
75160505 TATTGTGAGG
*
75160515 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCGCATTTGAAGTACT
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCGCATGTGAAGTACT
* *
75160580 AAGTGTAGGCTACTATGCGTACCCGAAAACTGTGA
66 AAGTGCAAGCTACTATGCGTACCCGAAAACTGTGA
* *
75160615 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTATTGGTCGCATGTGTAGTACT
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCGCATGTGAAGTACT
*
75160680 AAGTGCAAGTTACTATGCGTACC
66 AAGTGCAAGCTACTATGCGTACC
75160703 AGATAGTTCG
Statistics
Matches: 82, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
100 82 1.00
ACGTcount: A:0.27, C:0.19, G:0.25, T:0.29
Consensus pattern (100 bp):
TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCGCATGTGAAGTACT
AAGTGCAAGCTACTATGCGTACCCGAAAACTGTGA
Found at i:75160990 original size:38 final size:38
Alignment explanation
Indices: 75160936--75161010 Score: 141
Period size: 38 Copynumber: 2.0 Consensus size: 38
75160926 GTGAACTTTA
75160936 GTAGTAAAACAATGTTCAATAGCAGCAGTGCATGACTG
1 GTAGTAAAACAATGTTCAATAGCAGCAGTGCATGACTG
*
75160974 GTAGTAAAACAGTGTTCAATAGCAGCAGTGCATGACT
1 GTAGTAAAACAATGTTCAATAGCAGCAGTGCATGACT
75161011 TTGAAAATTT
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
38 36 1.00
ACGTcount: A:0.36, C:0.16, G:0.24, T:0.24
Consensus pattern (38 bp):
GTAGTAAAACAATGTTCAATAGCAGCAGTGCATGACTG
Found at i:75166412 original size:100 final size:100
Alignment explanation
Indices: 75166230--75167026 Score: 1504
Period size: 100 Copynumber: 8.0 Consensus size: 100
75166220 CAAATGAACT
* * * * * * * *
75166230 ACTGTGAGGTCACGTGTGCAGTACTAAGTGCAGGCTACTACCTGTACCGGGTAATTGGCCGCATG
1 ACTGTGA--TCACGTGTGTAGTACTAAGTGAAGGCTACTACGTGTACCAGATTATTAGCCCCATG
75166295 TGTAGTACTAAGTGCAGGCTACTATGCGTACCCGAAA
64 TGTAGTACTAAGTGCAGGCTACTATGCGTACCCGAAA
75166332 ACTGTGATCACGTGTGTAGTACTAAGTGAAGGCTACTACGTGTACCAGATTATTAGCCCCATGTG
1 ACTGTGATCACGTGTGTAGTACTAAGTGAAGGCTACTACGTGTACCAGATTATTAGCCCCATGTG
75166397 TAGTACTAAGTGCAGGCTACTATGCGTACCCGAAA
66 TAGTACTAAGTGCAGGCTACTATGCGTACCCGAAA
75166432 ACTGTGATCACGTGTGTAGTACTAAGTGAAGGCTACTACGTGTACCAGATTATTAGCCCCATGTG
1 ACTGTGATCACGTGTGTAGTACTAAGTGAAGGCTACTACGTGTACCAGATTATTAGCCCCATGTG
75166497 TAGTACTAAGTGCAGGCTACTATGCGTACCCGAAA
66 TAGTACTAAGTGCAGGCTACTATGCGTACCCGAAA
75166532 ACTGTGATCACGTGTGTAGTACTAAGTGAAGGCTACTACGTGTACCAGATTATTAGCCCCATGTG
1 ACTGTGATCACGTGTGTAGTACTAAGTGAAGGCTACTACGTGTACCAGATTATTAGCCCCATGTG
75166597 TAGTACTAAGTGCAGGCTACTATGCGTACCCGAAA
66 TAGTACTAAGTGCAGGCTACTATGCGTACCCGAAA
75166632 ACTGTGATCACGTGTGTAGTACTAAGTGAAGGCTACTACGTGTACCAGATTATTAGCCCCATGTG
1 ACTGTGATCACGTGTGTAGTACTAAGTGAAGGCTACTACGTGTACCAGATTATTAGCCCCATGTG
75166697 TAGTACTAAGTGCAGGCTACTATGCGTACCCGAAA
66 TAGTACTAAGTGCAGGCTACTATGCGTACCCGAAA
75166732 ACTGTGATCACGTGTGTAGTACTAAGTGAAGGCTACTACGTGTACCAGATTATTAGCCCCATGTG
1 ACTGTGATCACGTGTGTAGTACTAAGTGAAGGCTACTACGTGTACCAGATTATTAGCCCCATGTG
75166797 TAGTACTAAGTGCAGGCTACTATGCGTACCCGAAA
66 TAGTACTAAGTGCAGGCTACTATGCGTACCCGAAA
75166832 ACTGTGATCACGTGTGTAGTACTAAGTGAAGGCTACTACGTGTACCAGATTATTAGCCCCATGTG
1 ACTGTGATCACGTGTGTAGTACTAAGTGAAGGCTACTACGTGTACCAGATTATTAGCCCCATGTG
75166897 TAGTACTAAGTGCAGGCTACTATGCGTACCCGAAA
66 TAGTACTAAGTGCAGGCTACTATGCGTACCCGAAA
75166932 ACTGTGATCACGTGTGTAGTACTAAGTGAAGGCTACTACGTGTACCAGATTATTAGCCCCATGTG
1 ACTGTGATCACGTGTGTAGTACTAAGTGAAGGCTACTACGTGTACCAGATTATTAGCCCCATGTG
75166997 TAGTACTAAGTGCAGGCTACTATGCGTACC
66 TAGTACTAAGTGCAGGCTACTATGCGTACC
75167027 AGATAGCTTC
Statistics
Matches: 687, Mismatches: 8, Indels: 2
0.99 0.01 0.00
Matches are distributed among these distances:
100 680 0.99
102 7 0.01
ACGTcount: A:0.27, C:0.21, G:0.25, T:0.27
Consensus pattern (100 bp):
ACTGTGATCACGTGTGTAGTACTAAGTGAAGGCTACTACGTGTACCAGATTATTAGCCCCATGTG
TAGTACTAAGTGCAGGCTACTATGCGTACCCGAAA
Found at i:75170471 original size:47 final size:46
Alignment explanation
Indices: 75170227--75170581 Score: 210
Period size: 47 Copynumber: 7.6 Consensus size: 46
75170217 TGGGTTAAGT
* * *
75170227 TGCCGCTGCCATGTCCCAGACATGGTCTTACACT-G-GCT-ATCTCCA
1 TGCCGATG-CATGTCCCAGACAT-GTCTTACACTAGCACTCATCTCTA
* * * * *
75170272 T--CGAGGTCAATGTCCCAGACATGGTCTTACACTAGCTCTCGTGTATACA
1 TGCCGATG-C-ATGTCCCAGACAT-GTCTTACACTAGCACTCATCTCT--A
* * **
75170321 TGCTGATGCATGTCCCATACATGTCTTACACTAGCACGAAAT-T-TA
1 TGCCGATGCATGTCCCAGACATGTCTTACACTAGCAC-TCATCTCTA
* * * * *
75170366 --CTCAATGCATGTCCCAGACACGTCTTACACTGGCTA-ACATCATCGA
1 TGC-CGATGCATGTCCCAGACATGTCTTACACTAGC-ACTCATC-TCTA
* *
75170412 GGCCGATGCATGTCCCAGACATGTCTTACACTAGCACTCACCTCTA
1 TGCCGATGCATGTCCCAGACATGTCTTACACTAGCACTCATCTCTA
* * ** * **
75170458 TGCCAATGCCATGTCCCAGACGTTGTCTTACACGGGCAATCATGAC-A
1 TGCCGATG-CATGTCCCAGAC-ATGTCTTACACTAGCACTCATCTCTA
* * * * *
75170505 CGGCTGATGCAAGTCCCAGACATGTCTTACACTAGCCCTCATCTCAA
1 -TGCCGATGCATGTCCCAGACATGTCTTACACTAGCACTCATCTCTA
75170552 TGCCGATGCCATGTCCCAGACATGGTCTTA
1 TGCCGATG-CATGTCCCAGACAT-GTCTTA
75170582 TATTGGCTCT
Statistics
Matches: 236, Mismatches: 51, Indels: 43
0.72 0.15 0.13
Matches are distributed among these distances:
43 8 0.03
44 51 0.22
45 5 0.02
46 36 0.15
47 73 0.31
48 44 0.19
49 15 0.06
50 1 0.00
51 3 0.01
ACGTcount: A:0.25, C:0.31, G:0.19, T:0.26
Consensus pattern (46 bp):
TGCCGATGCATGTCCCAGACATGTCTTACACTAGCACTCATCTCTA
Found at i:75170490 original size:139 final size:136
Alignment explanation
Indices: 75170236--75170490 Score: 302
Period size: 139 Copynumber: 1.8 Consensus size: 136
75170226 TTGCCGCTGC
* * *
75170236 CATGTCCCAGACATGGTCTTACACTGGCTATCTCCATCGAGGTCAATGTCCCAGACATGGTCTTA
1 CATGTCCCAGACATCGTCTTACACTGGCTAACTCCATCGAGGCCAATGTCCCAGACATGGTCTTA
* *** ** *
75170301 CACTAGCTCTCGTGTATACATGCTGATGCATGTCCCATACATGTCTTACACTAGCACGAAATTTA
66 CACTAGCACTCACCTATA-ATGCCAATGCATGTCCCAGACATGTCTTACACTAGCACGAAATTTA
75170366 CTCAATG
130 CTCAATG
75170373 CATGTCCCAGACA-CGTCTTACACTGGCTAACAT-CATCGAGGCCGATGCATGTCCCAGACAT-G
1 CATGTCCCAGACATCGTCTTACACTGGCTAAC-TCCATCGAGGCC-A---ATGTCCCAGACATGG
* *
75170435 TCTTACACTAGCACTCACCTCT-ATGCCAATGCCATGTCCCAGACGTTGTCTTACAC
61 TCTTACACTAGCACTCACCTATAATGCCAATG-CATGTCCCAGAC-ATGTCTTACAC
75170491 GGGCAATCAT
Statistics
Matches: 99, Mismatches: 12, Indels: 12
0.80 0.10 0.10
Matches are distributed among these distances:
136 25 0.25
137 22 0.22
138 11 0.11
139 28 0.28
140 13 0.13
ACGTcount: A:0.25, C:0.31, G:0.17, T:0.27
Consensus pattern (136 bp):
CATGTCCCAGACATCGTCTTACACTGGCTAACTCCATCGAGGCCAATGTCCCAGACATGGTCTTA
CACTAGCACTCACCTATAATGCCAATGCATGTCCCAGACATGTCTTACACTAGCACGAAATTTAC
TCAATG
Found at i:75170521 original size:94 final size:94
Alignment explanation
Indices: 75170322--75170581 Score: 282
Period size: 94 Copynumber: 2.8 Consensus size: 94
75170312 GTGTATACAT
* * * *
75170322 GCTGATGCATGTCCCATACATGTCTTACACTAGCAC-GAAAT-T-TACTCAATG-CATGTCCCAG
1 GCTGATGCATGTCCCAGACATGTCTTACACTAGCACTCAACTCTATGC-CAATGCCATGTCCCAG
* *
75170383 ACACGTCTTACACTGGCTAACATCATCGAG
65 ACTCGTCTTACACGGGCTAACATCATCGAG
* *
75170413 GCCGATGCATGTCCCAGACATGTCTTACACTAGCACTCACCTCTATGCCAATGCCATGTCCCAGA
1 GCTGATGCATGTCCCAGACATGTCTTACACTAGCACTCAACTCTATGCCAATGCCATGTCCCAGA
* *
75170478 CGTTGTCTTACACGGGC-AATCATGA-C-ACG
66 C-TCGTCTTACACGGGCTAA-CATCATCGA-G
* * * * *
75170507 GCTGATGCAAGTCCCAGACATGTCTTACACTAGCCCTCATCTCAATGCCGATGCCATGTCCCAGA
1 GCTGATGCATGTCCCAGACATGTCTTACACTAGCACTCAACTCTATGCCAATGCCATGTCCCAGA
*
75170572 CATGGTCTTA
66 C-TCGTCTTA
75170582 TATTGGCTCT
Statistics
Matches: 144, Mismatches: 18, Indels: 11
0.83 0.10 0.06
Matches are distributed among these distances:
91 34 0.24
92 2 0.01
93 7 0.05
94 85 0.59
95 16 0.11
ACGTcount: A:0.26, C:0.31, G:0.18, T:0.25
Consensus pattern (94 bp):
GCTGATGCATGTCCCAGACATGTCTTACACTAGCACTCAACTCTATGCCAATGCCATGTCCCAGA
CTCGTCTTACACGGGCTAACATCATCGAG
Found at i:75177237 original size:43 final size:43
Alignment explanation
Indices: 75177188--75177313 Score: 173
Period size: 43 Copynumber: 2.9 Consensus size: 43
75177178 TTACACATAT
*
75177188 CAATGCCAATGTCCCAGACATGGTCTTACACGAAATCATATA-A
1 CAATGCCAATGTCCCAGACATGGTCTTACACGAAATCACA-ACA
* * *
75177231 CGATGCCAATGTCCCAGACATGTTCTTACACGTAATCACAACA
1 CAATGCCAATGTCCCAGACATGGTCTTACACGAAATCACAACA
* * *
75177274 CAATGCCAATGTCCCAAACATGGTCTTACATGTAATCACA
1 CAATGCCAATGTCCCAGACATGGTCTTACACGAAATCACA
75177314 TCTCGGTAAT
Statistics
Matches: 74, Mismatches: 8, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
42 1 0.01
43 73 0.99
ACGTcount: A:0.35, C:0.28, G:0.13, T:0.24
Consensus pattern (43 bp):
CAATGCCAATGTCCCAGACATGGTCTTACACGAAATCACAACA
Found at i:75188049 original size:5 final size:5
Alignment explanation
Indices: 75188033--75188072 Score: 64
Period size: 5 Copynumber: 8.2 Consensus size: 5
75188023 GAACTCATGC
*
75188033 TCTTT T-TTT TCTTT TCTTT TCTTT TCTTT TCTTT ACTTT T
1 TCTTT TCTTT TCTTT TCTTT TCTTT TCTTT TCTTT TCTTT T
75188073 TAAATTCGAG
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
4 4 0.12
5 28 0.88
ACGTcount: A:0.03, C:0.17, G:0.00, T:0.80
Consensus pattern (5 bp):
TCTTT
Found at i:75193065 original size:40 final size:40
Alignment explanation
Indices: 75193017--75193164 Score: 242
Period size: 40 Copynumber: 3.7 Consensus size: 40
75193007 GCAAACACAT
* * *
75193017 TTGCCTTCGGGTCTTAACCCGGACATATCAACTTGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
*
75193057 TTGCCTTCGGGTCTTAGCCCGGATATATCATCTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
* *
75193097 TTGCCTTCGGGTCATAGCCCGGGTATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
75193137 TTGCCTTCGGGTCTTAGCCCGGATATAT
1 TTGCCTTCGGGTCTTAGCCCGGATATAT
75193165 TCCAATGCTC
Statistics
Matches: 99, Mismatches: 9, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
40 99 1.00
ACGTcount: A:0.21, C:0.27, G:0.21, T:0.31
Consensus pattern (40 bp):
TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
Found at i:75200384 original size:39 final size:40
Alignment explanation
Indices: 75200339--75200510 Score: 222
Period size: 40 Copynumber: 4.3 Consensus size: 40
75200329 GCTCCTCGTT
* * *
75200339 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
*
75200379 C-AATGCCTTCGGGACATAACCCGGATTTAATAACTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
* * *
75200418 CGAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
* * * *
75200458 CAAAGGCCTTCGGGGCTTAACCCGGAATTT-GTATCTCGCA
1 CAAATGCCTTCGGGACATAACCCGG-ATTTAGTAACTCGCA
75200498 CAAATGCCTTCGG
1 CAAATGCCTTCGG
75200511 ATCTTAGTCC
Statistics
Matches: 119, Mismatches: 11, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
39 35 0.29
40 80 0.67
41 4 0.03
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
Found at i:75200439 original size:40 final size:39
Alignment explanation
Indices: 75200341--75200563 Score: 216
Period size: 40 Copynumber: 5.6 Consensus size: 39
75200331 TCCTCGTTCA
* * * *
75200341 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC
1 AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
* *
75200380 AATGCCTTCGGGACATAACCCGGATTTAATAACTCGCAC
1 AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
*
75200419 GAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCAC
1 -AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
* * *
75200459 AAAGGCCTTCGGGGCTTAACCCGGAATTT-GTATCTCGCAC
1 -AATGCCTTCGGGACTTAACCCGG-ATTTAGTAACTCGCAC
** * * * *
75200499 AAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCAC
1 -AATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCAC
* *
75200540 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
75200564 CAGCATTCAA
Statistics
Matches: 157, Mismatches: 21, Indels: 11
0.83 0.11 0.06
Matches are distributed among these distances:
39 40 0.25
40 105 0.67
41 12 0.08
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.26
Consensus pattern (39 bp):
AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
Found at i:75200523 original size:80 final size:79
Alignment explanation
Indices: 75200339--75200563 Score: 240
Period size: 80 Copynumber: 2.8 Consensus size: 79
75200329 GCTCCTCGTT
* * * * *
75200339 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACACAATGCCTTCGGGACATAACCCGG-
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGT-ACTCGCACAAAGCCTTCGGGACTTAACCCGGA
75200403 ATTTAATAACTCGCA
65 ATTTAATAACTCGCA
* * *
75200418 CGAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACAAAGGCCTTCGGGGCTTAACCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTA-CTCGCACAAA-GCCTTCGGGACTTAACCCGG
* *
75200483 AATTT-GTATCTCGCA
64 AATTTAATAACTCGCA
* * * * *
75200498 CAAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCACAAAGCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGT-AC-TCGCACAAAGCCTTCGGGACTTAACCCG
75200562 GA
63 GA
75200564 CAGCATTCAA
Statistics
Matches: 122, Mismatches: 18, Indels: 11
0.81 0.12 0.07
Matches are distributed among these distances:
78 1 0.01
79 39 0.32
80 69 0.57
81 13 0.11
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (79 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTACTCGCACAAAGCCTTCGGGACTTAACCCGGAA
TTTAATAACTCGCA
Found at i:75200572 original size:41 final size:41
Alignment explanation
Indices: 75200495--75200572 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
75200485 TTTGTATCTC
* * *
75200495 GCACAAATGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
75200536 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAATGCCTTC-GGATCTTAGCCCGGACA-CATTCA
75200573 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (41 bp):
GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:75206511 original size:24 final size:25
Alignment explanation
Indices: 75206484--75206533 Score: 93
Period size: 24 Copynumber: 2.0 Consensus size: 25
75206474 CCTGTGAAAA
75206484 TTCCGCTATGGAAGTGG-GAAAGAG
1 TTCCGCTATGGAAGTGGAGAAAGAG
75206508 TTCCGCTATGGAAGTGGAGAAAGAG
1 TTCCGCTATGGAAGTGGAGAAAGAG
75206533 T
1 T
75206534 AACAATAGCT
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
24 17 0.68
25 8 0.32
ACGTcount: A:0.30, C:0.12, G:0.36, T:0.22
Consensus pattern (25 bp):
TTCCGCTATGGAAGTGGAGAAAGAG
Found at i:75227597 original size:30 final size:30
Alignment explanation
Indices: 75227561--75227620 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
75227551 TTCCTGAGCC
*
75227561 TAGGGGCAAAAGTGTAATTATGCAAAAGTT
1 TAGGGGCAAAAATGTAATTATGCAAAAGTT
* *
75227591 TAGGGGCAAAAATGTAATTTTTCAAAAGTT
1 TAGGGGCAAAAATGTAATTATGCAAAAGTT
75227621 CGTATTAAAT
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.40, C:0.07, G:0.23, T:0.30
Consensus pattern (30 bp):
TAGGGGCAAAAATGTAATTATGCAAAAGTT
Found at i:75232553 original size:53 final size:53
Alignment explanation
Indices: 75232436--75232577 Score: 160
Period size: 53 Copynumber: 2.6 Consensus size: 53
75232426 AGGAAATCAT
* * * * * *
75232436 GTAAGACCATGTCAAGACATGGCATTGATAAACTACGATAAGGCAAAGATCCCAT
1 GTAAGACCATGTCAAGACATGGCAATGGT-AAGTTC-ATAAGGCAAAGATACCAC
* * * *
75232491 GTAAGACCAT-TCCAAGGCATGGCAATGGTGAGTTCATAAGGCCAGGATACCAC
1 GTAAGACCATGT-CAAGACATGGCAATGGTAAGTTCATAAGGCAAAGATACCAC
75232544 GTAAGACCATGTCAAGACATGGCAATGGTAAGTT
1 GTAAGACCATGTCAAGACATGGCAATGGTAAGTT
75232578 TAAAAAGGAA
Statistics
Matches: 73, Mismatches: 12, Indels: 6
0.80 0.13 0.07
Matches are distributed among these distances:
53 44 0.60
54 5 0.07
55 24 0.33
ACGTcount: A:0.36, C:0.20, G:0.24, T:0.20
Consensus pattern (53 bp):
GTAAGACCATGTCAAGACATGGCAATGGTAAGTTCATAAGGCAAAGATACCAC
Found at i:75237030 original size:39 final size:39
Alignment explanation
Indices: 75236985--75237144 Score: 284
Period size: 39 Copynumber: 4.1 Consensus size: 39
75236975 ATGCAAGACA
75236985 CTGGAAATGTATCCGGGCCAAAGTCCCGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCCAAAGTCCCGCAGGCTTCGTG
*
75237024 CTGGAAATGTATCCAGGCCAAAGTCCCGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCCAAAGTCCCGCAGGCTTCGTG
75237063 CTGGAAATGTATCCGGGCCAAAGTCCCGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCCAAAGTCCCGCAGGCTTCGTG
** *
75237102 CTGGAAATGTATCCGGGTTAAAGTCCCGCAGGCTTTGTG
1 CTGGAAATGTATCCGGGCCAAAGTCCCGCAGGCTTCGTG
75237141 CTGG
1 CTGG
75237145 TAATATAATT
Statistics
Matches: 116, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
39 116 1.00
ACGTcount: A:0.21, C:0.26, G:0.31, T:0.23
Consensus pattern (39 bp):
CTGGAAATGTATCCGGGCCAAAGTCCCGCAGGCTTCGTG
Found at i:75243925 original size:53 final size:53
Alignment explanation
Indices: 75243747--75243953 Score: 198
Period size: 53 Copynumber: 3.8 Consensus size: 53
75243737 ATTAGGGTTT
** * * * * *
75243747 AAGGATACCATGTAAGACCATGCCAAGGTAGGGCATTGGTAAGTTTTACAAGGT
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAG-TTCATAAGGC
* * * * * ** * *
75243801 AAGGAAATCTTGTAAGACCATGTCAAGACATGGCATTAATAAACTACGATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATGGT-AAGTTC-ATAAGGC
* * * *
75243856 AAAGATCCCATGTAAGACCATGCCAAGGCATGGCAATGGTGAGTTCATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAGTTCATAAGGC
*
75243909 AAGGATACCATGTAAGACCATGTCAAGACATGGCAATGGTAAGTT
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAGTT
75243954 TAAAAAGGAA
Statistics
Matches: 119, Mismatches: 32, Indels: 5
0.76 0.21 0.03
Matches are distributed among these distances:
53 47 0.39
54 35 0.29
55 37 0.31
ACGTcount: A:0.37, C:0.17, G:0.25, T:0.22
Consensus pattern (53 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAGTTCATAAGGC
Found at i:75252210 original size:15 final size:17
Alignment explanation
Indices: 75252179--75252210 Score: 50
Period size: 15 Copynumber: 2.0 Consensus size: 17
75252169 ATGAAAATGT
75252179 AATGCAAACACAGTCAA
1 AATGCAAACACAGTCAA
75252196 AATG-AAACA-AGTCAA
1 AATGCAAACACAGTCAA
75252211 TACATTTCAT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
15 6 0.40
16 5 0.33
17 4 0.27
ACGTcount: A:0.56, C:0.19, G:0.12, T:0.12
Consensus pattern (17 bp):
AATGCAAACACAGTCAA
Found at i:75253825 original size:11 final size:11
Alignment explanation
Indices: 75253809--75253847 Score: 53
Period size: 11 Copynumber: 3.6 Consensus size: 11
75253799 CAAGTAACAA
75253809 AAATTAACACT
1 AAATTAACACT
*
75253820 AAATTAACTCT
1 AAATTAACACT
*
75253831 AAATTAA-ATT
1 AAATTAACACT
75253841 AAATTAA
1 AAATTAA
75253848 ATTAAGAATA
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
10 8 0.32
11 17 0.68
ACGTcount: A:0.56, C:0.10, G:0.00, T:0.33
Consensus pattern (11 bp):
AAATTAACACT
Found at i:75253840 original size:5 final size:5
Alignment explanation
Indices: 75253809--75253852 Score: 52
Period size: 5 Copynumber: 8.4 Consensus size: 5
75253799 CAAGTAACAA
* *
75253809 AAATT AACACT AAATT AACTCT AAATT AAATT AAATT AAATT AA
1 AAATT AA-ATT AAATT AAAT-T AAATT AAATT AAATT AAATT AA
75253853 GAATACAAGA
Statistics
Matches: 33, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
5 25 0.76
6 8 0.24
ACGTcount: A:0.57, C:0.09, G:0.00, T:0.34
Consensus pattern (5 bp):
AAATT
Found at i:75253845 original size:10 final size:10
Alignment explanation
Indices: 75253809--75253852 Score: 52
Period size: 11 Copynumber: 4.2 Consensus size: 10
75253799 CAAGTAACAA
*
75253809 AAATTAACACT
1 AAATTAA-ATT
*
75253820 AAATTAACTCT
1 AAATTAAAT-T
75253831 AAATTAAATT
1 AAATTAAATT
75253841 AAATTAAATT
1 AAATTAAATT
75253851 AA
1 AA
75253853 GAATACAAGA
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
10 13 0.45
11 16 0.55
ACGTcount: A:0.57, C:0.09, G:0.00, T:0.34
Consensus pattern (10 bp):
AAATTAAATT
Found at i:75255644 original size:49 final size:49
Alignment explanation
Indices: 75255582--75255711 Score: 165
Period size: 49 Copynumber: 2.7 Consensus size: 49
75255572 TATTGTGTGT
*
75255582 TAGTGTAAA-ACCTGTCTGGGACATGGCATCGACAC-CGATAGATGAGAGC
1 TAGTG-AAAGACCTGTCTGGGACATGGCATCGAC-CTCGATAGATGAAAGC
** * * *
75255631 TAGTGAAAGACCTGTCTGGGACACAGCATCGGCCTCGATATATGAAAGT
1 TAGTGAAAGACCTGTCTGGGACATGGCATCGACCTCGATAGATGAAAGC
*
75255680 TAGTGTAAGACCTGTCTGGGACATGGCATCGA
1 TAGTGAAAGACCTGTCTGGGACATGGCATCGA
75255712 ATTTGATGTG
Statistics
Matches: 69, Mismatches: 10, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
48 4 0.06
49 65 0.94
ACGTcount: A:0.29, C:0.20, G:0.28, T:0.22
Consensus pattern (49 bp):
TAGTGAAAGACCTGTCTGGGACATGGCATCGACCTCGATAGATGAAAGC
Found at i:75256182 original size:29 final size:29
Alignment explanation
Indices: 75256140--75256197 Score: 116
Period size: 29 Copynumber: 2.0 Consensus size: 29
75256130 TATCAATGTG
75256140 GTGAAAATGAATTAATAAGGTGTGATAAA
1 GTGAAAATGAATTAATAAGGTGTGATAAA
75256169 GTGAAAATGAATTAATAAGGTGTGATAAA
1 GTGAAAATGAATTAATAAGGTGTGATAAA
75256198 CTTAGTATCA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.48, C:0.00, G:0.24, T:0.28
Consensus pattern (29 bp):
GTGAAAATGAATTAATAAGGTGTGATAAA
Found at i:75277116 original size:38 final size:38
Alignment explanation
Indices: 75277027--75277224 Score: 317
Period size: 38 Copynumber: 5.2 Consensus size: 38
75277017 TCGAAATATG
*
75277027 ATATTCGGGTTAAATCCCGCAGGCTTCGTGCTGGT-TT
1 ATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTATT
*
75277064 ATATCCGGGTTAAATCTCGCAGGCTTCGTGCTGGTATT
1 ATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTATT
* *
75277102 GTATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAAT
1 ATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTATT
*
75277140 ATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTATC
1 ATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTATT
* *
75277178 ATATCCGGGTTAAATCCCGCAGGCCTAGTGCTGGTATT
1 ATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTATT
*
75277216 ATATTCGGG
1 ATATCCGGG
75277225 CCTTTGAGCC
Statistics
Matches: 148, Mismatches: 12, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
37 33 0.22
38 115 0.78
ACGTcount: A:0.19, C:0.23, G:0.27, T:0.31
Consensus pattern (38 bp):
ATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTATT
Found at i:75277314 original size:45 final size:45
Alignment explanation
Indices: 75277218--75277345 Score: 131
Period size: 46 Copynumber: 2.9 Consensus size: 45
75277208 CTGGTATTAT
* * * *
75277218 ATTCGGGCCTTT-GAGCCTAGCAAACTATTATGCCGGCGAGACATT
1 ATTCGGGCCTTTCGAGCCTAGCAAGCTATAATGCCGGTGA-ACATA
* *
75277263 ATTCGGGCCTTTCGAGCCTAGCATGCTATAATACCGGTGAA-ATA
1 ATTCGGGCCTTTCGAGCCTAGCAAGCTATAATGCCGGTGAACATA
* *
75277307 ATATCGGGCC--TCGAGCCTAGCAGGCGA-AATGCCGGTGAA
1 AT-TCGGGCCTTTCGAGCCTAGCAAGCTATAATGCCGGTGAA
75277346 TGAATAAAAG
Statistics
Matches: 72, Mismatches: 9, Indels: 7
0.82 0.10 0.08
Matches are distributed among these distances:
42 11 0.15
43 15 0.21
44 4 0.06
45 20 0.28
46 22 0.31
ACGTcount: A:0.26, C:0.24, G:0.27, T:0.23
Consensus pattern (45 bp):
ATTCGGGCCTTTCGAGCCTAGCAAGCTATAATGCCGGTGAACATA
Found at i:75279450 original size:30 final size:31
Alignment explanation
Indices: 75279408--75279473 Score: 107
Period size: 30 Copynumber: 2.2 Consensus size: 31
75279398 TCATATTTTC
*
75279408 TTTATTCTTTATTCTTTCCATCTCTTTTTAT
1 TTTATTCTTTATTCTTTCCATCTCTCTTTAT
*
75279439 TTTATT-TTTATTCTTTCCTTCTCTCTTTAT
1 TTTATTCTTTATTCTTTCCATCTCTCTTTAT
75279469 TTTAT
1 TTTAT
75279474 AACAAAAACA
Statistics
Matches: 33, Mismatches: 2, Indels: 1
0.92 0.06 0.03
Matches are distributed among these distances:
30 27 0.82
31 6 0.18
ACGTcount: A:0.12, C:0.18, G:0.00, T:0.70
Consensus pattern (31 bp):
TTTATTCTTTATTCTTTCCATCTCTCTTTAT
Found at i:75280894 original size:150 final size:147
Alignment explanation
Indices: 75280657--75280924 Score: 383
Period size: 150 Copynumber: 1.8 Consensus size: 147
75280647 TATTTATATA
* * *
75280657 TTTAAAATTCATGTCGCTCACAATTTAGTTTATTCTTTTTTCATTTTAATATCATACATATTTCA
1 TTTAAAATTCATGTCCCTCACAATTTAATTTATTCTTTTTTCATTTTAATATCATACATATTCCA
* * ** *
75280722 TTTGTTATTATTAATTAATTTCAAACCATAGGTTTCTTTATTTATTGTATGTTATTTATTCTTAA
66 TGTGCTATTATTAATTAATTTCAAACCATACATTTCTTTATTTATTATATGTTATTTATTCTTAA
75280787 TATGATGTATTTACGTG
131 TATGATGTATTTACGTG
* *
75280804 TTTAAAATTCATTTCCCTCGCAAATTTAATTTATTCTTTTTTTTCATTTTAATATCATACATATT
1 TTTAAAATTCATGTCCCTCAC-AATTTAATTTATTC--TTTTTTCATTTTAATATCATACATATT
* * * *
75280869 CCGTGTGCTATTATTAGTTAGTTTCAAACTATACATTTCTTTATTTATTATATGTT
63 CCATGTGCTATTATTAATTAATTTCAAACCATACATTTCTTTATTTATTATATGTT
75280925 TTGTTTTAAA
Statistics
Matches: 104, Mismatches: 14, Indels: 3
0.86 0.12 0.02
Matches are distributed among these distances:
147 18 0.17
148 13 0.12
150 73 0.70
ACGTcount: A:0.28, C:0.12, G:0.07, T:0.53
Consensus pattern (147 bp):
TTTAAAATTCATGTCCCTCACAATTTAATTTATTCTTTTTTCATTTTAATATCATACATATTCCA
TGTGCTATTATTAATTAATTTCAAACCATACATTTCTTTATTTATTATATGTTATTTATTCTTAA
TATGATGTATTTACGTG
Found at i:75283856 original size:25 final size:25
Alignment explanation
Indices: 75283827--75283879 Score: 106
Period size: 25 Copynumber: 2.1 Consensus size: 25
75283817 ACATGCCATG
75283827 TATGTCTCATCAATTCATGCTTACA
1 TATGTCTCATCAATTCATGCTTACA
75283852 TATGTCTCATCAATTCATGCTTACA
1 TATGTCTCATCAATTCATGCTTACA
75283877 TAT
1 TAT
75283880 CAAGGATTTC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 28 1.00
ACGTcount: A:0.28, C:0.23, G:0.08, T:0.42
Consensus pattern (25 bp):
TATGTCTCATCAATTCATGCTTACA
Found at i:75287949 original size:127 final size:127
Alignment explanation
Indices: 75287723--75287976 Score: 508
Period size: 127 Copynumber: 2.0 Consensus size: 127
75287713 TTCTTCGTCG
75287723 TCGATAAACCAGAGGCAGCATTAAATCCTCATGCACCAAACCCTCCACGAAAACAATATAAACCC
1 TCGATAAACCAGAGGCAGCATTAAATCCTCATGCACCAAACCCTCCACGAAAACAATATAAACCC
75287788 CTAACTCACCACCTTACACCTTCCATCATCCACCCCCCCCCCCAAAAAAAAGAAAAAAAGCT
66 CTAACTCACCACCTTACACCTTCCATCATCCACCCCCCCCCCCAAAAAAAAGAAAAAAAGCT
75287850 TCGATAAACCAGAGGCAGCATTAAATCCTCATGCACCAAACCCTCCACGAAAACAATATAAACCC
1 TCGATAAACCAGAGGCAGCATTAAATCCTCATGCACCAAACCCTCCACGAAAACAATATAAACCC
75287915 CTAACTCACCACCTTACACCTTCCATCATCCACCCCCCCCCCCAAAAAAAAGAAAAAAAGCT
66 CTAACTCACCACCTTACACCTTCCATCATCCACCCCCCCCCCCAAAAAAAAGAAAAAAAGCT
75287977 CCGGCCTCTT
Statistics
Matches: 127, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
127 127 1.00
ACGTcount: A:0.40, C:0.38, G:0.07, T:0.15
Consensus pattern (127 bp):
TCGATAAACCAGAGGCAGCATTAAATCCTCATGCACCAAACCCTCCACGAAAACAATATAAACCC
CTAACTCACCACCTTACACCTTCCATCATCCACCCCCCCCCCCAAAAAAAAGAAAAAAAGCT
Found at i:75292503 original size:23 final size:24
Alignment explanation
Indices: 75292477--75292521 Score: 74
Period size: 24 Copynumber: 1.9 Consensus size: 24
75292467 ATTTAGAATT
*
75292477 AATGAGTTT-TATTTTGGGTTTTA
1 AATGAGTTTATATATTGGGTTTTA
75292500 AATGAGTTTATATATTGGGTTT
1 AATGAGTTTATATATTGGGTTT
75292522 ATATGTTCAA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
23 9 0.45
24 11 0.55
ACGTcount: A:0.24, C:0.00, G:0.22, T:0.53
Consensus pattern (24 bp):
AATGAGTTTATATATTGGGTTTTA
Found at i:75293753 original size:18 final size:17
Alignment explanation
Indices: 75293724--75293763 Score: 53
Period size: 18 Copynumber: 2.3 Consensus size: 17
75293714 TAAATATTAT
* *
75293724 TTAATCAACTAATTTAA
1 TTAATCAACTAAATAAA
75293741 TTAATCAAACTAAATAAA
1 TTAATC-AACTAAATAAA
75293759 TTAAT
1 TTAAT
75293764 TTCTCAATTA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
17 6 0.30
18 14 0.70
ACGTcount: A:0.53, C:0.10, G:0.00, T:0.38
Consensus pattern (17 bp):
TTAATCAACTAAATAAA
Found at i:75293762 original size:22 final size:21
Alignment explanation
Indices: 75293737--75293781 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
75293727 ATCAACTAAT
75293737 TTAATTAATCAAACTAAATAAA
1 TTAATTAATC-AACTAAATAAA
** *
75293759 TTAATTTCTCAATTAAATAAA
1 TTAATTAATCAACTAAATAAA
75293780 TT
1 TT
75293782 TCTCAACCTA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
21 12 0.60
22 8 0.40
ACGTcount: A:0.51, C:0.09, G:0.00, T:0.40
Consensus pattern (21 bp):
TTAATTAATCAACTAAATAAA
Found at i:75293781 original size:17 final size:17
Alignment explanation
Indices: 75293755--75293787 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
75293745 TCAAACTAAA
*
75293755 TAAATTAATTTCTCAAT
1 TAAATAAATTTCTCAAT
75293772 TAAATAAATTTCTCAA
1 TAAATAAATTTCTCAA
75293788 CCTAATTCTA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.45, C:0.12, G:0.00, T:0.42
Consensus pattern (17 bp):
TAAATAAATTTCTCAAT
Found at i:75293908 original size:4 final size:4
Alignment explanation
Indices: 75293899--75293930 Score: 57
Period size: 4 Copynumber: 8.2 Consensus size: 4
75293889 CTTCGAACTC
75293899 TAAT TAAT TAAT TAAT TAAT TAAT TAA- TAAT T
1 TAAT TAAT TAAT TAAT TAAT TAAT TAAT TAAT T
75293931 CGAAGAATCT
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
3 3 0.11
4 24 0.89
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (4 bp):
TAAT
Found at i:75300235 original size:29 final size:30
Alignment explanation
Indices: 75300168--75300235 Score: 68
Period size: 29 Copynumber: 2.3 Consensus size: 30
75300158 CCCATATTTT
* * *
75300168 TCATTTATTCACATATTTAACCCCACATTT
1 TCATTTTTTCACATAATTAACCCCACATTG
**
75300198 TCACATTTTCACA-AATTAACCCCTA-ATTG
1 TCATTTTTTCACATAATTAACCCC-ACATTG
75300227 TCATTTTTT
1 TCATTTTTT
75300236 TTCAAAAAGT
Statistics
Matches: 30, Mismatches: 7, Indels: 3
0.75 0.17 0.08
Matches are distributed among these distances:
29 19 0.63
30 11 0.37
ACGTcount: A:0.29, C:0.25, G:0.01, T:0.44
Consensus pattern (30 bp):
TCATTTTTTCACATAATTAACCCCACATTG
Found at i:75300959 original size:176 final size:175
Alignment explanation
Indices: 75300665--75301016 Score: 659
Period size: 176 Copynumber: 2.0 Consensus size: 175
75300655 TTTAATAAGC
75300665 CATTGAAAATAAACACCTTTAACTTATGGAATGCCACTTTCGCATTTTACGCGATTAAGTCCTTT
1 CATTGAAAATAAACACCTTTAACTTATGGAATGCCACTTTCGCATTTTACGCGATTAAGTCCTTT
75300730 TTACAATTTAAACACACAAAGGGTAAAATTAGCACACGAAACTTTCACACATATCACAAACCATG
66 TTACAATTTAAACACACAAAGGGTAAAATTAGCACACGAAACTTTCACACATATCACAAACCATG
75300795 CTATAAACATAGAAAATAATATTAAAATAATTTTTGAACTCAAATT
131 CTATAAACATAGAAAATAATATTAAAATAATTTTT-AACTCAAATT
* *
75300841 CATTGAAAATAAACACCTTTAACTTATGGAATGCCACTTTTGCATTTTACGCGATTAAGTTCTTT
1 CATTGAAAATAAACACCTTTAACTTATGGAATGCCACTTTCGCATTTTACGCGATTAAGTCCTTT
*
75300906 TTACAATTTAAACACACAAAGGGTAAAATTAGCACATGAAACTTTCACACATATCACAAACCATG
66 TTACAATTTAAACACACAAAGGGTAAAATTAGCACACGAAACTTTCACACATATCACAAACCATG
*
75300971 CTGTAAACATAGAAAATAATATTAAAATAATTTTTAACTCAAATT
131 CTATAAACATAGAAAATAATATTAAAATAATTTTTAACTCAAATT
75301016 C
1 C
75301017 GTGGTCCCGA
Statistics
Matches: 172, Mismatches: 4, Indels: 1
0.97 0.02 0.01
Matches are distributed among these distances:
175 11 0.06
176 161 0.94
ACGTcount: A:0.42, C:0.18, G:0.09, T:0.31
Consensus pattern (175 bp):
CATTGAAAATAAACACCTTTAACTTATGGAATGCCACTTTCGCATTTTACGCGATTAAGTCCTTT
TTACAATTTAAACACACAAAGGGTAAAATTAGCACACGAAACTTTCACACATATCACAAACCATG
CTATAAACATAGAAAATAATATTAAAATAATTTTTAACTCAAATT
Found at i:75306911 original size:42 final size:43
Alignment explanation
Indices: 75306809--75306967 Score: 153
Period size: 43 Copynumber: 3.7 Consensus size: 43
75306799 TATGTGTTAT
* * * * *
75306809 CGTGTAAGACCAC-ATCTGAGACGTTGGCATCGATTTGTGATTTA
1 CGTGTAAGACC-CTGTCTGGGACATTGGCATCGATATATGA-TTA
* * *
75306853 TGTGTAAGACCATGTCTGGGACATTGGCATC-ATATATGATTT
1 CGTGTAAGACCCTGTCTGGGACATTGGCATCGATATATGATTA
* * *
75306895 CGTGTAAAACCCTGTCTGGGACAGTGGCATCGATATTTGATTA
1 CGTGTAAGACCCTGTCTGGGACATTGGCATCGATATATGATTA
* *
75306938 CATGTAAGACCAC-GTCTGGGACGTTGGCAT
1 CGTGTAAGACC-CTGTCTGGGACATTGGCAT
75306968 TGTATGAGCT
Statistics
Matches: 94, Mismatches: 18, Indels: 7
0.79 0.15 0.06
Matches are distributed among these distances:
42 29 0.31
43 39 0.41
44 26 0.28
ACGTcount: A:0.25, C:0.18, G:0.26, T:0.31
Consensus pattern (43 bp):
CGTGTAAGACCCTGTCTGGGACATTGGCATCGATATATGATTA
Found at i:75309809 original size:20 final size:20
Alignment explanation
Indices: 75309784--75309834 Score: 84
Period size: 20 Copynumber: 2.5 Consensus size: 20
75309774 GTTTTAGAGA
75309784 GTCACACGCCCGTGTGGCTT
1 GTCACACGCCCGTGTGGCTT
75309804 GTCACACGCCCGTGTGGCTT
1 GTCACACGCCCGTGTGGCTT
**
75309824 GGGACACGCCC
1 GTCACACGCCC
75309835 ATGCCCTCAG
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 29 1.00
ACGTcount: A:0.12, C:0.37, G:0.31, T:0.20
Consensus pattern (20 bp):
GTCACACGCCCGTGTGGCTT
Found at i:75320028 original size:33 final size:34
Alignment explanation
Indices: 75319991--75320069 Score: 83
Period size: 34 Copynumber: 2.4 Consensus size: 34
75319981 ATCAGTAAGT
* *
75319991 CCAGTTTCAGT-TAGGGCCTTAG-CCATTACAGTA
1 CCAGTATCAGTGT-GGGCCTGAGCCCATTACAGTA
*
75320024 CCAGTATCAGTGTGGGCCTGAGCCCATTTCAGTGA
1 CCAGTATCAGTGTGGGCCTGAGCCCATTACAGT-A
*
75320059 -CAGTAGCAGTG
1 CCAGTATCAGTG
75320070 CAGATATGCA
Statistics
Matches: 39, Mismatches: 4, Indels: 5
0.81 0.08 0.10
Matches are distributed among these distances:
33 18 0.46
34 20 0.51
35 1 0.03
ACGTcount: A:0.23, C:0.24, G:0.27, T:0.27
Consensus pattern (34 bp):
CCAGTATCAGTGTGGGCCTGAGCCCATTACAGTA
Found at i:75321407 original size:5 final size:5
Alignment explanation
Indices: 75321397--75321425 Score: 58
Period size: 5 Copynumber: 5.8 Consensus size: 5
75321387 GAAGGGGGGG
75321397 AGAGA AGAGA AGAGA AGAGA AGAGA AGAG
1 AGAGA AGAGA AGAGA AGAGA AGAGA AGAG
75321426 GTTCGGCTAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 24 1.00
ACGTcount: A:0.59, C:0.00, G:0.41, T:0.00
Consensus pattern (5 bp):
AGAGA
Found at i:75322270 original size:42 final size:42
Alignment explanation
Indices: 75322224--75322320 Score: 106
Period size: 42 Copynumber: 2.3 Consensus size: 42
75322214 GTCCCATATG
** * *
75322224 TGGTCTTACATGGGATCTCACATCGATGCCATATACT-AGATA
1 TGGTCTTACATGAAATCTCACATCAATACCATAT-CTCAGATA
* ** *
75322266 TGGTCTTATACAAAATCTCATATCAATACCATATCTCAGATA
1 TGGTCTTACATGAAATCTCACATCAATACCATATCTCAGATA
75322308 TGGTCTTACATGA
1 TGGTCTTACATGA
75322321 TAACTGTAAC
Statistics
Matches: 43, Mismatches: 11, Indels: 2
0.77 0.20 0.04
Matches are distributed among these distances:
41 2 0.05
42 41 0.95
ACGTcount: A:0.32, C:0.21, G:0.14, T:0.33
Consensus pattern (42 bp):
TGGTCTTACATGAAATCTCACATCAATACCATATCTCAGATA
Found at i:75323999 original size:71 final size:71
Alignment explanation
Indices: 75323880--75324109 Score: 406
Period size: 71 Copynumber: 3.2 Consensus size: 71
75323870 ACTTGTTGTA
75323880 TTCGCACACTTAGTGCTATTATTTAACTCGCAATGCAATGAGATCGCACACTTAGTGCTTGATAG
1 TTCGCACACTTAGTGCTATTATTTAACTCGCAATGCAATGAGATCGCACACTTAGTGCTTGATAG
75323945 TTTTAC
66 TTTTAC
* *
75323951 TTTGCACACTTAGTGCTATTATTTAACTCGCAATGCAATGAGAGCGCACACTTAGTGCTTGATAG
1 TTCGCACACTTAGTGCTATTATTTAACTCGCAATGCAATGAGATCGCACACTTAGTGCTTGATAG
75324016 TTTTAC
66 TTTTAC
* ** *
75324022 TTCACACACTTAGTGCTATTATTTAACTCGCAATGCAATGAGATCGCACACTTAGTGCTCAATAA
1 TTCGCACACTTAGTGCTATTATTTAACTCGCAATGCAATGAGATCGCACACTTAGTGCTTGATAG
75324087 TTTTAC
66 TTTTAC
75324093 TTCGCACACTTAGTGCT
1 TTCGCACACTTAGTGCT
75324110 CGATAATTCA
Statistics
Matches: 150, Mismatches: 9, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
71 150 1.00
ACGTcount: A:0.27, C:0.22, G:0.16, T:0.35
Consensus pattern (71 bp):
TTCGCACACTTAGTGCTATTATTTAACTCGCAATGCAATGAGATCGCACACTTAGTGCTTGATAG
TTTTAC
Found at i:75325591 original size:29 final size:29
Alignment explanation
Indices: 75325549--75325606 Score: 107
Period size: 29 Copynumber: 2.0 Consensus size: 29
75325539 GGACAATCAA
75325549 TTCAATTTAGTCCAAGATTTTACTCTTTC
1 TTCAATTTAGTCCAAGATTTTACTCTTTC
*
75325578 TTCAATTTAGTCCAAGATTTTCCTCTTTC
1 TTCAATTTAGTCCAAGATTTTACTCTTTC
75325607 CCCGGTCTAG
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.22, C:0.22, G:0.07, T:0.48
Consensus pattern (29 bp):
TTCAATTTAGTCCAAGATTTTACTCTTTC
Done.