Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr9
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 91122320
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2661692 characters in sequence are not A, C, G, or T
File 23 of 279
Found at i:7510620 original size:27 final size:27
Alignment explanation
Indices: 7510582--7510691 Score: 116
Period size: 27 Copynumber: 4.1 Consensus size: 27
7510572 GAAGCGTCCA
*
7510582 GGTGGCTATGCCACAATTATCTGATCT
1 GGTGGCTCTGCCACAATTATCTGATCT
*
7510609 GGTGGCTCTGCCACATATT-TCTGTTCT
1 GGTGGCTCTGCCACA-ATTATCTGATCT
* * *
7510636 GGTGGCTCTGCCACGATTATCTATATTT
1 GGTGGCTCTGCCACAATTATCT-GATCT
* * *
7510664 GGTGACTCTGTCAC-ATTATCTGTTCT
1 GGTGGCTCTGCCACAATTATCTGATCT
7510690 GG
1 GG
7510692 CAGCCATGCT
Statistics
Matches: 69, Mismatches: 11, Indels: 7
0.79 0.13 0.08
Matches are distributed among these distances:
26 7 0.10
27 45 0.65
28 17 0.25
ACGTcount: A:0.16, C:0.23, G:0.23, T:0.38
Consensus pattern (27 bp):
GGTGGCTCTGCCACAATTATCTGATCT
Found at i:7510686 original size:54 final size:54
Alignment explanation
Indices: 7510582--7510691 Score: 141
Period size: 54 Copynumber: 2.0 Consensus size: 54
7510572 GAAGCGTCCA
* *
7510582 GGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATTTCTGTTCT
1 GGTGGCTATGCCACAATTATCTGATCTGGTGACTCTGCCACATATATCTGTTCT
* * * * *
7510636 GGTGGCTCTGCCACGATTATCTATATTTGGTGACTCTGTCACAT-TATCTGTTCT
1 GGTGGCTATGCCACAATTATCT-GATCTGGTGACTCTGCCACATATATCTGTTCT
7510690 GG
1 GG
7510692 CAGCCATGCT
Statistics
Matches: 48, Mismatches: 7, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
54 31 0.65
55 17 0.35
ACGTcount: A:0.16, C:0.23, G:0.23, T:0.38
Consensus pattern (54 bp):
GGTGGCTATGCCACAATTATCTGATCTGGTGACTCTGCCACATATATCTGTTCT
Found at i:7512665 original size:38 final size:38
Alignment explanation
Indices: 7512623--7512697 Score: 150
Period size: 38 Copynumber: 2.0 Consensus size: 38
7512613 AAATGGACAA
7512623 ACAAAGATGATGGCCTTTGTTTTCATTATTTTACTAAG
1 ACAAAGATGATGGCCTTTGTTTTCATTATTTTACTAAG
7512661 ACAAAGATGATGGCCTTTGTTTTCATTATTTTACTAA
1 ACAAAGATGATGGCCTTTGTTTTCATTATTTTACTAA
7512698 CCTTATTTAT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 37 1.00
ACGTcount: A:0.29, C:0.13, G:0.15, T:0.43
Consensus pattern (38 bp):
ACAAAGATGATGGCCTTTGTTTTCATTATTTTACTAAG
Found at i:7513078 original size:20 final size:20
Alignment explanation
Indices: 7513053--7513104 Score: 70
Period size: 20 Copynumber: 2.6 Consensus size: 20
7513043 ACTGTTACAC
7513053 TCCATTTACTTACTTGT-CAT
1 TCCATTTACTTACTT-TCCAT
*
7513073 TCCATTTATTTACTTTCCAT
1 TCCATTTACTTACTTTCCAT
*
7513093 TTCATTTACTTA
1 TCCATTTACTTA
7513105 GCATAAACTT
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
19 1 0.04
20 27 0.96
ACGTcount: A:0.21, C:0.23, G:0.02, T:0.54
Consensus pattern (20 bp):
TCCATTTACTTACTTTCCAT
Found at i:7513090 original size:15 final size:16
Alignment explanation
Indices: 7513072--7513103 Score: 57
Period size: 15 Copynumber: 2.1 Consensus size: 16
7513062 TTACTTGTCA
7513072 TTCCATTT-ATTTACT
1 TTCCATTTCATTTACT
7513087 TTCCATTTCATTTACT
1 TTCCATTTCATTTACT
7513103 T
1 T
7513104 AGCATAAACT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 8 0.50
16 8 0.50
ACGTcount: A:0.19, C:0.22, G:0.00, T:0.59
Consensus pattern (16 bp):
TTCCATTTCATTTACT
Found at i:7514490 original size:19 final size:19
Alignment explanation
Indices: 7514454--7514492 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
7514444 TTTTCACCAT
* *
7514454 AGTAAAATAAAATAATAAA
1 AGTAAAAAAAAACAATAAA
*
7514473 AGTAAAAAAAAACCATAAA
1 AGTAAAAAAAAACAATAAA
7514492 A
1 A
7514493 ATAATTAAAA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.74, C:0.05, G:0.05, T:0.15
Consensus pattern (19 bp):
AGTAAAAAAAAACAATAAA
Found at i:7515042 original size:28 final size:27
Alignment explanation
Indices: 7514956--7515045 Score: 101
Period size: 27 Copynumber: 3.2 Consensus size: 27
7514946 GTGACAGAGT
*
7514956 CACCAGATACAGATATTTTGTGGCAGTGC
1 CACCAGA-ACAGATAATTTGTGGCA-TGC
** *
7514985 CACCAGAACAGAT-ATACGTGGCAGGGC
1 CACCAGAACAGATAATTTGTGGCA-TGC
7515012 CACCAGAACAGATAATTTGTGGCATAGC
1 CACCAGAACAGATAATTTGTGGCAT-GC
7515040 CACCAG
1 CACCAG
7515046 GACGCTTCCT
Statistics
Matches: 52, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
27 23 0.44
28 22 0.42
29 7 0.13
ACGTcount: A:0.32, C:0.24, G:0.24, T:0.19
Consensus pattern (27 bp):
CACCAGAACAGATAATTTGTGGCATGC
Found at i:7522365 original size:19 final size:19
Alignment explanation
Indices: 7522329--7522367 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
7522319 TTTTCACCAT
* *
7522329 AGTAAAATAAAATAATAAA
1 AGTAAAACAAAACAATAAA
*
7522348 AGTAAAACAAAACCATAAA
1 AGTAAAACAAAACAATAAA
7522367 A
1 A
7522368 ATAATTAAAA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.72, C:0.08, G:0.05, T:0.15
Consensus pattern (19 bp):
AGTAAAACAAAACAATAAA
Found at i:7522906 original size:28 final size:27
Alignment explanation
Indices: 7522821--7522910 Score: 92
Period size: 27 Copynumber: 3.2 Consensus size: 27
7522811 GTGACAGAGT
*
7522821 CACCAGATACAGATATTTTGTGGCAGTGC
1 CACCAGA-ACAGATAATTTGTGGCA-TGC
** *
7522850 CACCAGAACAGAT-ATACGTGGCAGGGC
1 CACCAGAACAGATAATTTGTGGCA-TGC
*
7522877 CACTAGAACAGATAATTTGTGGCATAGC
1 CACCAGAACAGATAATTTGTGGCAT-GC
7522905 CACCAG
1 CACCAG
7522911 GACGCTTCCT
Statistics
Matches: 50, Mismatches: 9, Indels: 5
0.78 0.14 0.08
Matches are distributed among these distances:
27 22 0.44
28 21 0.42
29 7 0.14
ACGTcount: A:0.32, C:0.23, G:0.24, T:0.20
Consensus pattern (27 bp):
CACCAGAACAGATAATTTGTGGCATGC
Found at i:7523063 original size:28 final size:28
Alignment explanation
Indices: 7523016--7523079 Score: 103
Period size: 28 Copynumber: 2.3 Consensus size: 28
7523006 AAATTAACCC
*
7523016 TAGGGGTATAGAGGTCATTTTGCATACA
1 TAGGGGTATAGAGGTAATTTTGCATACA
7523044 TAGGGGTATA-ATGGTAATTTTGCATACA
1 TAGGGGTATAGA-GGTAATTTTGCATACA
7523072 TAGGGGTA
1 TAGGGGTA
7523080 CTCTAGTACA
Statistics
Matches: 34, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
27 1 0.03
28 33 0.97
ACGTcount: A:0.30, C:0.08, G:0.30, T:0.33
Consensus pattern (28 bp):
TAGGGGTATAGAGGTAATTTTGCATACA
Found at i:7529114 original size:45 final size:45
Alignment explanation
Indices: 7529056--7529186 Score: 129
Period size: 45 Copynumber: 2.9 Consensus size: 45
7529046 AATCTAATAC
* ** * *
7529056 GATGCCAATGTCCCGGACATGGTCTTACACGTAACCACATATATT
1 GATGCCAAAGTCCCAAACATGGTCTTACACGAAAACACATATATT
* * *
7529101 GATGCCAAAGTCCCAAACGTGGTCTTACATGAAAACATATATATT
1 GATGCCAAAGTCCCAAACATGGTCTTACACGAAAACACATATATT
* ** * *
7529146 GATGCCAACA-TCCCAGATGTGGTCTTACTCGAAAATACATA
1 GATGCCAA-AGTCCCAAACATGGTCTTACACGAAAACACATA
7529187 CCAAAATCCT
Statistics
Matches: 71, Mismatches: 14, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
45 70 0.99
46 1 0.01
ACGTcount: A:0.34, C:0.24, G:0.17, T:0.26
Consensus pattern (45 bp):
GATGCCAAAGTCCCAAACATGGTCTTACACGAAAACACATATATT
Found at i:7531908 original size:10 final size:10
Alignment explanation
Indices: 7531893--7531927 Score: 61
Period size: 10 Copynumber: 3.4 Consensus size: 10
7531883 TTTGTACATA
7531893 ATATGCCATG
1 ATATGCCATG
7531903 ATATGCACATG
1 ATATGC-CATG
7531914 ATATGCCATG
1 ATATGCCATG
7531924 ATAT
1 ATAT
7531928 ATGCATATAT
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
10 14 0.58
11 10 0.42
ACGTcount: A:0.34, C:0.17, G:0.17, T:0.31
Consensus pattern (10 bp):
ATATGCCATG
Found at i:7531912 original size:21 final size:21
Alignment explanation
Indices: 7531888--7531927 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
7531878 ATTGATTTGT
7531888 ACATAATATGCCATGATATGC
1 ACATAATATGCCATGATATGC
*
7531909 ACATGATATGCCATGATAT
1 ACATAATATGCCATGATAT
7531928 ATGCATATAT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.38, C:0.17, G:0.15, T:0.30
Consensus pattern (21 bp):
ACATAATATGCCATGATATGC
Found at i:7532273 original size:31 final size:31
Alignment explanation
Indices: 7532238--7532312 Score: 132
Period size: 31 Copynumber: 2.4 Consensus size: 31
7532228 TGTTTACCGT
7532238 AAAGGCTTCGGCCCAGTGATATGAATAATGA
1 AAAGGCTTCGGCCCAGTGATATGAATAATGA
* *
7532269 AAAGGCTTCGGCCCAGTGGTATGAATAATGT
1 AAAGGCTTCGGCCCAGTGATATGAATAATGA
7532300 AAAGGCTTCGGCC
1 AAAGGCTTCGGCC
7532313 TAATATATGC
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
31 42 1.00
ACGTcount: A:0.31, C:0.19, G:0.28, T:0.23
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGATATGAATAATGA
Found at i:7535097 original size:12 final size:12
Alignment explanation
Indices: 7535080--7535112 Score: 66
Period size: 12 Copynumber: 2.8 Consensus size: 12
7535070 AAACGCACAC
7535080 AAAGTAAGCTTT
1 AAAGTAAGCTTT
7535092 AAAGTAAGCTTT
1 AAAGTAAGCTTT
7535104 AAAGTAAGC
1 AAAGTAAGC
7535113 CATATACAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.45, C:0.09, G:0.18, T:0.27
Consensus pattern (12 bp):
AAAGTAAGCTTT
Found at i:7535651 original size:36 final size:36
Alignment explanation
Indices: 7535599--7535669 Score: 115
Period size: 36 Copynumber: 2.0 Consensus size: 36
7535589 TAACTATTCC
*
7535599 TATGGTTCGTACGGGGCTTTTGAACGTCATTACATG
1 TATGGTTCGTACGGGGCTTTCGAACGTCATTACATG
* *
7535635 TATGGTTCGTATGGGGCTTTCGGACGTCATTACAT
1 TATGGTTCGTACGGGGCTTTCGAACGTCATTACAT
7535670 TATCGAAACT
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
36 32 1.00
ACGTcount: A:0.18, C:0.17, G:0.28, T:0.37
Consensus pattern (36 bp):
TATGGTTCGTACGGGGCTTTCGAACGTCATTACATG
Found at i:7539983 original size:67 final size:64
Alignment explanation
Indices: 7539848--7540028 Score: 188
Period size: 67 Copynumber: 2.8 Consensus size: 64
7539838 CATAATTTTG
* * * * * * * *
7539848 GCTCTCTTGTAC-ACATGGTGAACACTTAGTACAACCTATGTGACCTAGCCAGT-T-TATCTCGT
1 GCTCTCTTGT-CTACATGGTGTACACATAGAACCACCCATGCGACCTAGCTA-TATATATCCCGT
7539910 A
64 A
* *
7539911 GCTCTCTTGTCTACATGGTGTCCTTCACCTAGAACCACCCATGCGACCTAGCTATATATATCCCG
1 GCTCTCTTGTCTACATGGTG---TACACATAGAACCACCCATGCGACCTAGCTATATATATCCCG
7539976 TA
63 TA
* *
7539978 GCTCTCTTGTCTACATGGTGTACACATAGTATCACCCATGCGACCTAGCTA
1 GCTCTCTTGTCTACATGGTGTACACATAGAACCACCCATGCGACCTAGCTA
7540029 CACCATAATG
Statistics
Matches: 99, Mismatches: 13, Indels: 11
0.80 0.11 0.09
Matches are distributed among these distances:
62 1 0.01
63 18 0.18
64 27 0.27
65 1 0.01
66 24 0.24
67 28 0.28
ACGTcount: A:0.24, C:0.29, G:0.17, T:0.30
Consensus pattern (64 bp):
GCTCTCTTGTCTACATGGTGTACACATAGAACCACCCATGCGACCTAGCTATATATATCCCGTA
Found at i:7546424 original size:43 final size:42
Alignment explanation
Indices: 7546314--7546438 Score: 121
Period size: 43 Copynumber: 2.9 Consensus size: 42
7546304 ATGCCAACGT
* *
7546314 CCCAGACATGGTCTTACA-TGTAATCAAATATCGATGCCACTGT
1 CCCAGACATGGTCTTACACT-AAATCAAATA-CGATGCCACTGC
* * * *
7546357 CCTAGACA-GGATCTTCCACGAAATCAAATACGATGCCAGTGC
1 CCCAGACATGG-TCTTACACTAAATCAAATACGATGCCACTGC
7546399 CCCAGACATGGTCTTACACATAAATCTCAAAT-CGATGCCA
1 CCCAGACATGGTCTTACAC-TAAA--TCAAATACGATGCCA
7546439 ACATCCCAAA
Statistics
Matches: 67, Mismatches: 9, Indels: 11
0.77 0.10 0.13
Matches are distributed among these distances:
42 26 0.39
43 27 0.40
44 8 0.12
45 6 0.09
ACGTcount: A:0.33, C:0.28, G:0.16, T:0.23
Consensus pattern (42 bp):
CCCAGACATGGTCTTACACTAAATCAAATACGATGCCACTGC
Found at i:7547533 original size:18 final size:18
Alignment explanation
Indices: 7547510--7547545 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
7547500 GCCACTTTTA
7547510 CATTTTACGCAATTAAGT
1 CATTTTACGCAATTAAGT
* *
7547528 CATTTTTCTCAATTAAGT
1 CATTTTACGCAATTAAGT
7547546 ACACAAACGA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.31, C:0.17, G:0.08, T:0.44
Consensus pattern (18 bp):
CATTTTACGCAATTAAGT
Found at i:7558167 original size:44 final size:44
Alignment explanation
Indices: 7558095--7558207 Score: 172
Period size: 44 Copynumber: 2.6 Consensus size: 44
7558085 GTCGACATCG
* * *
7558095 GATTCCGACTTATGTGTACGAGTAAGACCGTGGCATCGATATGT
1 GATTCCGATTTATGTGTACAAGTAAGACCATGGCATCGATATGT
* *
7558139 GATTTCGATTTATGTGTGCAAGTAAGACCATGGCATCGATATGT
1 GATTCCGATTTATGTGTACAAGTAAGACCATGGCATCGATATGT
*
7558183 GATTCCGATTTATGTGTACGAGTAA
1 GATTCCGATTTATGTGTACAAGTAA
7558208 AACCCTGTCT
Statistics
Matches: 61, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
44 61 1.00
ACGTcount: A:0.27, C:0.15, G:0.26, T:0.33
Consensus pattern (44 bp):
GATTCCGATTTATGTGTACAAGTAAGACCATGGCATCGATATGT
Found at i:7560750 original size:79 final size:81
Alignment explanation
Indices: 7560614--7560798 Score: 227
Period size: 79 Copynumber: 2.3 Consensus size: 81
7560604 TTGAATGATG
* *
7560614 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCAAT
7560678 TGTGCGAGATACTA-A
66 TGTGCGAGATACTATA
* * * **
7560693 TTCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
*
7560755 ATTGTGCGAGTTACTATA
64 ATTGTGCGAGATACTATA
* *
7560773 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
7560799 AACGAGTAGC
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 1 0.01
79 57 0.63
80 33 0.36
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCAAT
TGTGCGAGATACTATA
Found at i:7560812 original size:40 final size:40
Alignment explanation
Indices: 7560615--7560798 Score: 207
Period size: 40 Copynumber: 4.6 Consensus size: 40
7560605 TGAATGATGT
* * * *
7560615 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* * *
7560655 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-A
7560695 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
* *
7560733 TCCGGGTTAAGTCCCGAAGGCAATTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
7560774 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
7560799 AACGAGTAGC
Statistics
Matches: 124, Mismatches: 13, Indels: 14
0.82 0.09 0.09
Matches are distributed among these distances:
39 35 0.28
40 79 0.64
41 10 0.08
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:7560820 original size:79 final size:79
Alignment explanation
Indices: 7560667--7560831 Score: 201
Period size: 79 Copynumber: 2.1 Consensus size: 79
7560657 GGACTAAGAT
* * **
7560667 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCAATTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
*
7560732 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* *
7560746 CCGAAGGCAATTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCAATTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTTA-C
* *
7560809 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
7560825 CCGAAGG
1 CCGAAGG
7560832 TACGTGATTT
Statistics
Matches: 74, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
78 2 0.03
79 47 0.64
80 25 0.34
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGAAGGCAATTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:7577138 original size:47 final size:47
Alignment explanation
Indices: 7577016--7577236 Score: 268
Period size: 47 Copynumber: 4.7 Consensus size: 47
7577006 GTTATACGTG
* * *
7577016 TAACGTGGTGCTAAGTGGATATACCACGATTACACATATTGATACAT
1 TAACGTGGTGCTAAGTGGATATACCACGGTTACATATATTGATTCAT
* *
7577063 GTAACATGGTGCTAAGTGGATATGCCACGGTTACATATATTGATTCAT
1 -TAACGTGGTGCTAAGTGGATATACCACGGTTACATATATTGATTCAT
* ** * **
7577111 TAACGTGGTGCTAAGTGGATATACCACGGTTAAACATGTAACG-TGGCGC
1 TAACGTGGTGCTAAGTGGATATACCACGGTT--ACATATATTGAT-TCAT
* *
7577160 T--CATGGTGCTAAGTGGATATGCCACGGTTACATATATTGATTCAT
1 TAACGTGGTGCTAAGTGGATATACCACGGTTACATATATTGATTCAT
7577205 TAACGTGGTGCTAAGTGGATATACCACGGTTA
1 TAACGTGGTGCTAAGTGGATATACCACGGTTA
7577237 AACATATAAC
Statistics
Matches: 144, Mismatches: 23, Indels: 13
0.80 0.13 0.07
Matches are distributed among these distances:
45 9 0.06
46 1 0.01
47 82 0.57
48 43 0.30
49 9 0.06
ACGTcount: A:0.29, C:0.16, G:0.24, T:0.30
Consensus pattern (47 bp):
TAACGTGGTGCTAAGTGGATATACCACGGTTACATATATTGATTCAT
Found at i:7577188 original size:94 final size:94
Alignment explanation
Indices: 7577016--7577246 Score: 358
Period size: 94 Copynumber: 2.4 Consensus size: 94
7577006 GTTATACGTG
* * * ***
7577016 TAACGTGGTGCTAAGTGGATATACCACGATTACACATATTGATACAT-G-TAACATGGTGCTAAG
1 TAACGTGGTGCTAAGTGGATATACCACGGTTAAACATA-T-A-ACGTGGCGCTCATGGTGCTAAG
7577079 TGGATATGCCACGGTTACATATATTGATTCAT
63 TGGATATGCCACGGTTACATATATTGATTCAT
*
7577111 TAACGTGGTGCTAAGTGGATATACCACGGTTAAACATGTAACGTGGCGCTCATGGTGCTAAGTGG
1 TAACGTGGTGCTAAGTGGATATACCACGGTTAAACATATAACGTGGCGCTCATGGTGCTAAGTGG
7577176 ATATGCCACGGTTACATATATTGATTCAT
66 ATATGCCACGGTTACATATATTGATTCAT
7577205 TAACGTGGTGCTAAGTGGATATACCACGGTTAAACATATAAC
1 TAACGTGGTGCTAAGTGGATATACCACGGTTAAACATATAAC
7577247 ATGGTGCTAA
Statistics
Matches: 126, Mismatches: 8, Indels: 5
0.91 0.06 0.04
Matches are distributed among these distances:
92 3 0.02
93 2 0.02
94 86 0.68
95 35 0.28
ACGTcount: A:0.31, C:0.16, G:0.23, T:0.30
Consensus pattern (94 bp):
TAACGTGGTGCTAAGTGGATATACCACGGTTAAACATATAACGTGGCGCTCATGGTGCTAAGTGG
ATATGCCACGGTTACATATATTGATTCAT
Found at i:7577261 original size:38 final size:38
Alignment explanation
Indices: 7577205--7577279 Score: 123
Period size: 38 Copynumber: 2.0 Consensus size: 38
7577195 ATTGATTCAT
*
7577205 TAACGTGGTGCTAAGTGGATATACCACGGTTAAACATA
1 TAACATGGTGCTAAGTGGATATACCACGGTTAAACATA
* *
7577243 TAACATGGTGCTAAGTGGATATGCCACGGTTATACAT
1 TAACATGGTGCTAAGTGGATATACCACGGTTAAACAT
7577280 GTTAATTTGA
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
38 34 1.00
ACGTcount: A:0.32, C:0.16, G:0.24, T:0.28
Consensus pattern (38 bp):
TAACATGGTGCTAAGTGGATATACCACGGTTAAACATA
Found at i:7582017 original size:53 final size:53
Alignment explanation
Indices: 7581835--7582041 Score: 191
Period size: 53 Copynumber: 3.8 Consensus size: 53
7581825 ATTAGGATTT
* * * * * *
7581835 AAGGATACCAAGTAAGACCATGCCAAGGCATGGTATTGGTAAGTTTTACAAGGC
1 AAGGATACCAAGTAAGACCATGTCAAGACATGGCAATGGTAAG-TTCATAAGGC
* * * * * * ***
7581889 AAGGAAATCATGTAAGACCATGTCAAGACATGGTATTGATAAACCACGATAAGGC
1 AAGGATACCAAGTAAGACCATGTCAAGACATGGCAATGGT-AAGTTC-ATAAGGC
* * * * *
7581944 AAAGATCCCATGTAAGACCATG-CTAAGGCATGGCAATGGTGAGTTCATAAGGC
1 AAGGATACCAAGTAAGACCATGTC-AAGACATGGCAATGGTAAGTTCATAAGGC
7581997 AAGGATACCAAGTAAGACCATGTCAAGACATGGCAATGGTAAGTT
1 AAGGATACCAAGTAAGACCATGTCAAGACATGGCAATGGTAAGTT
7582042 TAAAAAGGAA
Statistics
Matches: 121, Mismatches: 28, Indels: 9
0.77 0.18 0.06
Matches are distributed among these distances:
53 45 0.37
54 38 0.31
55 38 0.31
ACGTcount: A:0.38, C:0.17, G:0.25, T:0.21
Consensus pattern (53 bp):
AAGGATACCAAGTAAGACCATGTCAAGACATGGCAATGGTAAGTTCATAAGGC
Found at i:7586707 original size:53 final size:53
Alignment explanation
Indices: 7586525--7586731 Score: 191
Period size: 53 Copynumber: 3.8 Consensus size: 53
7586515 ATTAGGATTT
* * * * * *
7586525 AAGGATACCAAGTAAGACCATGCCAAGGCATGGTATTGGTAAGTTTTACAAGGC
1 AAGGATACCAAGTAAGACCATGTCAAGACATGGCAATGGTAAG-TTCATAAGGC
* * * * * * ***
7586579 AAGGAAATCATGTAAGACCATGTCAAGACATGGTATTGATAAACCACGATAAGGC
1 AAGGATACCAAGTAAGACCATGTCAAGACATGGCAATGGT-AAGTTC-ATAAGGC
* * * * *
7586634 AAAGATCCCATGTAAGACCATG-CTAAGGCATGGCAATGGTGAGTTCATAAGGC
1 AAGGATACCAAGTAAGACCATGTC-AAGACATGGCAATGGTAAGTTCATAAGGC
7586687 AAGGATACCAAGTAAGACCATGTCAAGACATGGCAATGGTAAGTT
1 AAGGATACCAAGTAAGACCATGTCAAGACATGGCAATGGTAAGTT
7586732 TAAAAAGGAA
Statistics
Matches: 121, Mismatches: 28, Indels: 9
0.77 0.18 0.06
Matches are distributed among these distances:
53 45 0.37
54 38 0.31
55 38 0.31
ACGTcount: A:0.38, C:0.17, G:0.25, T:0.21
Consensus pattern (53 bp):
AAGGATACCAAGTAAGACCATGTCAAGACATGGCAATGGTAAGTTCATAAGGC
Found at i:7603893 original size:31 final size:31
Alignment explanation
Indices: 7603855--7603918 Score: 92
Period size: 31 Copynumber: 2.1 Consensus size: 31
7603845 CCTTTTCATG
* *
7603855 TTTCATATTTCATAACATTGGGCTGAAGCCT
1 TTTCATATTTCATAACACTGGGCCGAAGCCT
**
7603886 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTTCATAACACTGGGCCGAAGCCT
7603917 TT
1 TT
7603919 ACTGTAAATG
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.23, C:0.20, G:0.16, T:0.41
Consensus pattern (31 bp):
TTTCATATTTCATAACACTGGGCCGAAGCCT
Found at i:7604167 original size:24 final size:24
Alignment explanation
Indices: 7604127--7604209 Score: 107
Period size: 25 Copynumber: 3.4 Consensus size: 24
7604117 CTGGAGGCCT
7604127 AGCCTCTTTTAAT-AACTAGGGC-AA
1 AGCC-CTTTTAATAAACT-GGGCAAA
*
7604151 AGCCCTTTTGATAAACTGAGGCAAA
1 AGCCCTTTTAATAAACTG-GGCAAA
7604176 AGCCCTTTTAATAAACTGGGTCAAA
1 AGCCCTTTTAATAAACTGGG-CAAA
7604201 AGCCCTTTT
1 AGCCCTTTT
7604210 CGGTAAACTG
Statistics
Matches: 53, Mismatches: 2, Indels: 7
0.85 0.03 0.11
Matches are distributed among these distances:
23 8 0.15
24 13 0.25
25 32 0.60
ACGTcount: A:0.33, C:0.22, G:0.17, T:0.29
Consensus pattern (24 bp):
AGCCCTTTTAATAAACTGGGCAAA
Found at i:7604183 original size:25 final size:24
Alignment explanation
Indices: 7604127--7604234 Score: 105
Period size: 25 Copynumber: 4.4 Consensus size: 24
7604117 CTGGAGGCCT
*
7604127 AGCCTCTTTTAAT-AACTAGGGC-AA
1 AGCC-CTTTTGATAAACT-GGGCAAA
7604151 AGCCCTTTTGATAAACTGAGGCAAA
1 AGCCCTTTTGATAAACTG-GGCAAA
*
7604176 AGCCCTTTTAATAAACTGGGTCAAA
1 AGCCCTTTTGATAAACTGGG-CAAA
* *
7604201 AGCCCTTTTCGGTAAACTGGGGC-AT
1 AGCCCTTTT-GATAAACT-GGGCAAA
7604226 AGCCCTTTT
1 AGCCCTTTT
7604235 TGCACTTCCT
Statistics
Matches: 73, Mismatches: 5, Indels: 11
0.82 0.06 0.12
Matches are distributed among these distances:
23 8 0.11
24 13 0.18
25 42 0.58
26 7 0.10
27 3 0.04
ACGTcount: A:0.30, C:0.22, G:0.19, T:0.29
Consensus pattern (24 bp):
AGCCCTTTTGATAAACTGGGCAAA
Found at i:7610524 original size:259 final size:260
Alignment explanation
Indices: 7610064--7610583 Score: 979
Period size: 259 Copynumber: 2.0 Consensus size: 260
7610054 GGCGTATCGA
* * *
7610064 CTCAGCCTCAAGAATTCTACCTCATACTTCGCAACAGTCTTATTACCCTTAGTCAGATTTAAAAA
1 CTCAGCCTCAAGAATTCTACCTCATACTCCGCAACAGTCTTATTACCCTGAGTCAGATTCAAAAA
*
7610129 TTCCTTTCGACGGGCATCCACATAACTAGCTCCAACATATCTCCCCTTAAAAGCAGTTTTGAACA
66 TTCCTTTCGACGGGCATCCACATAACTAGCTCCAACATACCTCCCCTTAAAAGCAGTTTTGAACA
7610194 ATTCCCAGGTTACTCGTTCAATCGGGGTACTCTCTCTTACGGTGATCCACCAACGATATGCCTCG
131 ATTCCCAGGTTACTCGTTCAATCGGGGTACTCTCTCTTACGGTGATCCACCAACGATATGCCTCG
7610259 TCTCGTAGCAGCGACACAACCCCCTTCAGCTTTTGCTCCACAGAGCAATCTAAATCGTCCATAAT
196 TCTCGTAGCAGCGACACAACCCCCTTCAGCTTTTGCTCCACAGAGCAATCTAAATCGTCCATAAT
* *
7610324 CTCAGCCTTAAGAATTCTGCCTCATACTCCGCAACAGTCTTATTACCCTGAGTCAGATTCAAAAA
1 CTCAGCCTCAAGAATTCTACCTCATACTCCGCAACAGTCTTATTACCCTGAGTCAGATTCAAAAA
7610389 TTCCTTTCGAC-GGCATCCACATAACTAGCTCCAACATACCTCCCCTTAAAAGCAGTTTTGAACA
66 TTCCTTTCGACGGGCATCCACATAACTAGCTCCAACATACCTCCCCTTAAAAGCAGTTTTGAACA
7610453 ATTCCCAGGTTACTCGTTCAATCGGGGTACTCTCTCTTACGGTGATCCACCAACGATATGCCTCG
131 ATTCCCAGGTTACTCGTTCAATCGGGGTACTCTCTCTTACGGTGATCCACCAACGATATGCCTCG
7610518 TCTCGTAGCAGCGACACAACCCCCTTCAGCTTTTGCTCCACAGAGCAATCTAAATCGTCCATAAT
196 TCTCGTAGCAGCGACACAACCCCCTTCAGCTTTTGCTCCACAGAGCAATCTAAATCGTCCATAAT
7610583 C
1 C
7610584 CGCTCTGTTG
Statistics
Matches: 254, Mismatches: 6, Indels: 1
0.97 0.02 0.00
Matches are distributed among these distances:
259 183 0.72
260 71 0.28
ACGTcount: A:0.27, C:0.31, G:0.14, T:0.28
Consensus pattern (260 bp):
CTCAGCCTCAAGAATTCTACCTCATACTCCGCAACAGTCTTATTACCCTGAGTCAGATTCAAAAA
TTCCTTTCGACGGGCATCCACATAACTAGCTCCAACATACCTCCCCTTAAAAGCAGTTTTGAACA
ATTCCCAGGTTACTCGTTCAATCGGGGTACTCTCTCTTACGGTGATCCACCAACGATATGCCTCG
TCTCGTAGCAGCGACACAACCCCCTTCAGCTTTTGCTCCACAGAGCAATCTAAATCGTCCATAAT
Found at i:7612205 original size:38 final size:38
Alignment explanation
Indices: 7612163--7612269 Score: 187
Period size: 38 Copynumber: 2.8 Consensus size: 38
7612153 CTCAGCGTAT
7612163 ACTGGGCCGAAGCCTTTTCATGTTTCATATTTCATAAC
1 ACTGGGCCGAAGCCTTTTCATGTTTCATATTTCATAAC
*
7612201 ACTGGGCTGAAGCCTTTTCATGTTTCATATTTCATAAC
1 ACTGGGCCGAAGCCTTTTCATGTTTCATATTTCATAAC
* *
7612239 ATTGGGCCGAAGCCTTTTCATATTTCATATT
1 ACTGGGCCGAAGCCTTTTCATGTTTCATATT
7612270 ACTGGGCCGA
Statistics
Matches: 65, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
38 65 1.00
ACGTcount: A:0.23, C:0.21, G:0.16, T:0.39
Consensus pattern (38 bp):
ACTGGGCCGAAGCCTTTTCATGTTTCATATTTCATAAC
Found at i:7612258 original size:31 final size:31
Alignment explanation
Indices: 7612223--7612286 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
7612213 CCTTTTCATG
*
7612223 TTTCATATTTCATAACATTGGGCCGAAGCCT
1 TTTCATATTTCATAACACTGGGCCGAAGCCT
**
7612254 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTTCATAACACTGGGCCGAAGCCT
7612285 TT
1 TT
7612287 ACTGTAATCG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.23, C:0.22, G:0.16, T:0.39
Consensus pattern (31 bp):
TTTCATATTTCATAACACTGGGCCGAAGCCT
Found at i:7612589 original size:26 final size:24
Alignment explanation
Indices: 7612495--7612600 Score: 135
Period size: 25 Copynumber: 4.3 Consensus size: 24
7612485 TTGGAGGCCT
*
7612495 AGCCTCTTTTAAT-AACTGGGGCAA
1 AGCC-CTTTTGATAAACTGGGGCAA
7612519 A-CCCTTTTGATAAACTGGGGCAAA
1 AGCCCTTTTGATAAACTGGGGC-AA
*
7612543 AGCCCTTTTAATAAACTGGGGCAA
1 AGCCCTTTTGATAAACTGGGGCAA
*
7612567 GAGCCCTTTTCGATAAACTGGGGCAT
1 -AGCCCTTTT-GATAAACTGGGGCAA
7612593 AGCCCTTT
1 AGCCCTTT
7612601 CTGCACTTCC
Statistics
Matches: 73, Mismatches: 4, Indels: 9
0.85 0.05 0.10
Matches are distributed among these distances:
22 7 0.10
23 11 0.15
24 6 0.08
25 36 0.49
26 13 0.18
ACGTcount: A:0.28, C:0.23, G:0.22, T:0.27
Consensus pattern (24 bp):
AGCCCTTTTGATAAACTGGGGCAA
Found at i:7612672 original size:20 final size:20
Alignment explanation
Indices: 7612649--7612695 Score: 78
Period size: 20 Copynumber: 2.4 Consensus size: 20
7612639 TTATGAATAC
7612649 ATCATGTGCATATCATA-CA
1 ATCATGTGCATATCATATCA
7612668 TATCATGTGCATATCATATCA
1 -ATCATGTGCATATCATATCA
7612689 ATCATGT
1 ATCATGT
7612696 ATATCAAAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
20 24 0.92
21 2 0.08
ACGTcount: A:0.34, C:0.19, G:0.11, T:0.36
Consensus pattern (20 bp):
ATCATGTGCATATCATATCA
Found at i:7614621 original size:18 final size:18
Alignment explanation
Indices: 7614598--7614633 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
7614588 GATTAGGTAA
7614598 GAATGCCACTAGGACTAT
1 GAATGCCACTAGGACTAT
7614616 GAATGCCACTAGGACTAT
1 GAATGCCACTAGGACTAT
7614634 TATGTGATTA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.33, C:0.22, G:0.22, T:0.22
Consensus pattern (18 bp):
GAATGCCACTAGGACTAT
Found at i:7619708 original size:13 final size:13
Alignment explanation
Indices: 7619690--7619719 Score: 60
Period size: 13 Copynumber: 2.3 Consensus size: 13
7619680 TTTGAATTAA
7619690 TTCACTCGTGACG
1 TTCACTCGTGACG
7619703 TTCACTCGTGACG
1 TTCACTCGTGACG
7619716 TTCA
1 TTCA
7619720 TGGTGTGATT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.17, C:0.30, G:0.20, T:0.33
Consensus pattern (13 bp):
TTCACTCGTGACG
Found at i:7620537 original size:16 final size:16
Alignment explanation
Indices: 7620518--7620556 Score: 53
Period size: 16 Copynumber: 2.4 Consensus size: 16
7620508 TAATAAGATT
7620518 TAATATTAAAT-TAATA
1 TAATATT-AATCTAATA
*
7620534 TAATATTTATCTAATA
1 TAATATTAATCTAATA
7620550 TAATATT
1 TAATATT
7620557 TCTCTTGATA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
15 2 0.10
16 19 0.90
ACGTcount: A:0.49, C:0.03, G:0.00, T:0.49
Consensus pattern (16 bp):
TAATATTAATCTAATA
Found at i:7622888 original size:21 final size:21
Alignment explanation
Indices: 7622862--7622901 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
7622852 TTATATCCCA
**
7622862 TAATTATTTTTTTACAATTCC
1 TAATTATTTTGGTACAATTCC
7622883 TAATTATTTTGGTACAATT
1 TAATTATTTTGGTACAATT
7622902 TTTATTGATT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.30, C:0.10, G:0.05, T:0.55
Consensus pattern (21 bp):
TAATTATTTTGGTACAATTCC
Found at i:7624185 original size:30 final size:30
Alignment explanation
Indices: 7624151--7624211 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
7624141 TCCTTAACTC
7624151 AAACTTTGGAAAAATTACAATTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
* * * * *
7624181 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
7624211 A
1 A
7624212 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACAATTTTGCCCCT
Found at i:7636608 original size:21 final size:21
Alignment explanation
Indices: 7636584--7636652 Score: 63
Period size: 21 Copynumber: 3.3 Consensus size: 21
7636574 TCGATTCTCA
7636584 TTTAATTAGTAAAAGTATATT
1 TTTAATTAGTAAAAGTATATT
* *
7636605 TTTAATAATGTAAAATGTAT-TA
1 TTTAATTA-GTAAAA-GTATATT
*
7636627 TTT-ATT-GTAAAAGTGTATT
1 TTTAATTAGTAAAAGTATATT
7636646 ATTTAAT
1 -TTTAAT
7636653 GAATTAAAAA
Statistics
Matches: 38, Mismatches: 5, Indels: 10
0.72 0.09 0.19
Matches are distributed among these distances:
18 3 0.08
19 7 0.18
20 3 0.08
21 11 0.29
22 10 0.26
23 4 0.11
ACGTcount: A:0.41, C:0.00, G:0.10, T:0.49
Consensus pattern (21 bp):
TTTAATTAGTAAAAGTATATT
Found at i:7636660 original size:23 final size:23
Alignment explanation
Indices: 7636593--7636661 Score: 69
Period size: 20 Copynumber: 3.2 Consensus size: 23
7636583 ATTTAATTAG
*
7636593 TAAAAGTATATT-TTTAAT-AAT
1 TAAAAGTGTATTATTTAATGAAT
*
7636614 GTAAAA-TGTATTATTTATTG---
1 -TAAAAGTGTATTATTTAATGAAT
7636634 TAAAAGTGTATTATTTAATGAAT
1 TAAAAGTGTATTATTTAATGAAT
7636657 TAAAA
1 TAAAA
7636662 AATAAACGTG
Statistics
Matches: 38, Mismatches: 3, Indels: 11
0.73 0.06 0.21
Matches are distributed among these distances:
19 5 0.13
20 13 0.34
21 5 0.13
22 10 0.26
23 5 0.13
ACGTcount: A:0.45, C:0.00, G:0.10, T:0.45
Consensus pattern (23 bp):
TAAAAGTGTATTATTTAATGAAT
Found at i:7641455 original size:43 final size:43
Alignment explanation
Indices: 7641408--7641559 Score: 152
Period size: 43 Copynumber: 3.6 Consensus size: 43
7641398 GCCAAAGTCT
*
7641408 CAGACGTGGTCTTACATGTAATCAAACATCGATGCC-ACTGTCC
1 CAGACGTGGTCTTACACGTAATCAAACA-CGATGCCAACTGTCC
* * * * *
7641451 CAGACAG-GGTCTTACACGAAATCAAATACAATACCGA-TGTCC
1 CAGAC-GTGGTCTTACACGTAATCAAACACGATGCCAACTGTCC
* *
7641493 CAGACATGGTCTTACACGTAAACAGAAGC-CGATGCCAAC-GTCC
1 CAGACGTGGTCTTACACGTAATCA-AA-CACGATGCCAACTGTCC
*
7641536 CAGACGTGGTCTTACACGAAATCA
1 CAGACGTGGTCTTACACGTAATCA
7641560 CATAACGAAA
Statistics
Matches: 88, Mismatches: 15, Indels: 12
0.77 0.13 0.10
Matches are distributed among these distances:
42 30 0.34
43 57 0.65
44 1 0.01
ACGTcount: A:0.33, C:0.28, G:0.19, T:0.20
Consensus pattern (43 bp):
CAGACGTGGTCTTACACGTAATCAAACACGATGCCAACTGTCC
Found at i:7652894 original size:27 final size:27
Alignment explanation
Indices: 7652864--7653041 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
7652854 ATATTGAGTC
* * * *
7652864 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
7652891 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
7652918 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
7652946 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
7652973 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
7653000 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
7653027 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
7653042 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:7653003 original size:82 final size:81
Alignment explanation
Indices: 7652885--7653040 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
7652875 TGCTATATAA
* *
7652885 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
7652950 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
7652967 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
7653031 CACTTAGTGC
65 CACTTAGTGC
7653041 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:7653546 original size:12 final size:12
Alignment explanation
Indices: 7653529--7653555 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
7653519 ATGGCATACT
7653529 TATGTATATATA
1 TATGTATATATA
7653541 TATGTATATATA
1 TATGTATATATA
7653553 TAT
1 TAT
7653556 ACTTCGGAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.41, C:0.00, G:0.07, T:0.52
Consensus pattern (12 bp):
TATGTATATATA
Found at i:7672266 original size:17 final size:16
Alignment explanation
Indices: 7672228--7672268 Score: 73
Period size: 16 Copynumber: 2.6 Consensus size: 16
7672218 CTATGTGATG
7672228 ATGGGGGAGGAATTCA
1 ATGGGGGAGGAATTCA
*
7672244 ATGGGGGAGGAATTTA
1 ATGGGGGAGGAATTCA
7672260 ATGGGGGAG
1 ATGGGGGAG
7672269 TTCTATCGAA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
16 24 1.00
ACGTcount: A:0.29, C:0.02, G:0.49, T:0.20
Consensus pattern (16 bp):
ATGGGGGAGGAATTCA
Found at i:7677772 original size:21 final size:21
Alignment explanation
Indices: 7677748--7677794 Score: 85
Period size: 21 Copynumber: 2.2 Consensus size: 21
7677738 TTGAGGGGTG
7677748 TGTCGTAACATCTCTTGGCTA
1 TGTCGTAACATCTCTTGGCTA
*
7677769 TGTCGTGACATCTCTTGGCTA
1 TGTCGTAACATCTCTTGGCTA
7677790 TGTCG
1 TGTCG
7677795 CGACATTGAA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.15, C:0.23, G:0.23, T:0.38
Consensus pattern (21 bp):
TGTCGTAACATCTCTTGGCTA
Found at i:7677799 original size:21 final size:21
Alignment explanation
Indices: 7677755--7677800 Score: 83
Period size: 21 Copynumber: 2.2 Consensus size: 21
7677745 GTGTGTCGTA
*
7677755 ACATCTCTTGGCTATGTCGTG
1 ACATCTCTTGGCTATGTCGCG
7677776 ACATCTCTTGGCTATGTCGCG
1 ACATCTCTTGGCTATGTCGCG
7677797 ACAT
1 ACAT
7677801 TGAAGGTAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.17, C:0.26, G:0.22, T:0.35
Consensus pattern (21 bp):
ACATCTCTTGGCTATGTCGCG
Found at i:7679099 original size:13 final size:13
Alignment explanation
Indices: 7679081--7679110 Score: 60
Period size: 13 Copynumber: 2.3 Consensus size: 13
7679071 AAACTAGATT
7679081 TTAACTAAGAAAA
1 TTAACTAAGAAAA
7679094 TTAACTAAGAAAA
1 TTAACTAAGAAAA
7679107 TTAA
1 TTAA
7679111 AAGGTAAAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.60, C:0.07, G:0.07, T:0.27
Consensus pattern (13 bp):
TTAACTAAGAAAA
Found at i:7683888 original size:25 final size:25
Alignment explanation
Indices: 7683860--7683913 Score: 65
Period size: 25 Copynumber: 2.2 Consensus size: 25
7683850 GCAGAATGAA
* *
7683860 GCAGCTGCTTGGGC-GGATGCAGCAG
1 GCAGCTGCGTCGGCTGGAT-CAGCAG
*
7683885 GCAGGTGCGTCGGCTGGATCAGCAG
1 GCAGCTGCGTCGGCTGGATCAGCAG
7683910 GCAG
1 GCAG
7683914 GGCAGGTGGC
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
25 21 0.84
26 4 0.16
ACGTcount: A:0.17, C:0.24, G:0.44, T:0.15
Consensus pattern (25 bp):
GCAGCTGCGTCGGCTGGATCAGCAG
Found at i:7687278 original size:48 final size:48
Alignment explanation
Indices: 7687199--7687340 Score: 214
Period size: 48 Copynumber: 3.0 Consensus size: 48
7687189 TGACATTAGG
* *
7687199 CCATGTAAGACCATGTCTGGGACTTGGCATTGGCATCGTTATGAGATC
1 CCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATATGAGATC
* *
7687247 CCATGTAAGACCATGTCTGGGACATGACATTGGCATCGACATGTA-ATC
1 CCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATATG-AGATC
* *
7687295 CCATGTAAGACCATATCTGGGATATGGCATTGGCATCGATATGAGA
1 CCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATATGAGA
7687341 CATCGTGTAC
Statistics
Matches: 84, Mismatches: 8, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
47 1 0.01
48 82 0.98
49 1 0.01
ACGTcount: A:0.27, C:0.20, G:0.25, T:0.27
Consensus pattern (48 bp):
CCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATATGAGATC
Found at i:7687363 original size:96 final size:91
Alignment explanation
Indices: 7687199--7687422 Score: 238
Period size: 96 Copynumber: 2.4 Consensus size: 91
7687189 TGACATTAGG
* * *
7687199 CCATGTAAGACCATGTCTGGGACT-TGGCATTGGCATCGTTATGAGATCCCATGTAAGACCATGT
1 CCATGTAAGACCATATCTGGGA-TATGGCATTGGCATCGATATGAGATCCCATGTAAGACCAAGT
*
7687263 CTGGGACATGACATTGGCATCGACATGTAATC
65 CTGGG-C-T---ATCGGCATCGACATGTAATC
* * *
7687295 CCATGTAAGACCATATCTGGGATATGGCATTGGCATCGATATGAGA-CATCGTGTACGACCACAG
1 CCATGTAAGACCATATCTGGGATATGGCATTGGCATCGATATGAGATC-CCATGTAAGACCA-AG
* ** *
7687359 -CTGGGCTATCGGCTTCGATTTGTGATC
64 TCTGGGCTATCGGCATCGACATGTAATC
* *
7687386 CCATGTAAGATCATATTTGGGATATGGCATTGGCATC
1 CCATGTAAGACCATATCTGGGATATGGCATTGGCATC
7687423 TTACTATGTT
Statistics
Matches: 112, Mismatches: 13, Indels: 11
0.82 0.10 0.08
Matches are distributed among these distances:
91 50 0.45
94 1 0.01
95 3 0.03
96 57 0.51
97 1 0.01
ACGTcount: A:0.25, C:0.21, G:0.25, T:0.28
Consensus pattern (91 bp):
CCATGTAAGACCATATCTGGGATATGGCATTGGCATCGATATGAGATCCCATGTAAGACCAAGTC
TGGGCTATCGGCATCGACATGTAATC
Found at i:7692748 original size:37 final size:37
Alignment explanation
Indices: 7692698--7692776 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
7692688 TTATTACGAA
* * *
7692698 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
7692735 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
7692772 GTCTT
1 GTCTT
7692777 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:7693068 original size:25 final size:25
Alignment explanation
Indices: 7692992--7693075 Score: 84
Period size: 25 Copynumber: 3.5 Consensus size: 25
7692982 ATTAGGCCTT
7692992 ATCACATATATACACTTTCACATTC
1 ATCACATATATACACTTTCACATTC
**** ***
7693017 ATCACAT-CGGCCA-TTAGGCATT-
1 ATCACATATATACACTTTCACATTC
7693039 ATCACATATATACACTTTCACATTC
1 ATCACATATATACACTTTCACATTC
7693064 ATCACATATATA
1 ATCACATATATA
7693076 ATTAGGCCTT
Statistics
Matches: 42, Mismatches: 14, Indels: 6
0.68 0.23 0.10
Matches are distributed among these distances:
22 7 0.17
23 8 0.19
24 8 0.19
25 19 0.45
ACGTcount: A:0.36, C:0.26, G:0.05, T:0.33
Consensus pattern (25 bp):
ATCACATATATACACTTTCACATTC
Found at i:7693082 original size:47 final size:47
Alignment explanation
Indices: 7692895--7693070 Score: 271
Period size: 47 Copynumber: 3.7 Consensus size: 47
7692885 CCCTTCGGGA
* * * * * *
7692895 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
7692942 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
7692989 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
7693036 ATTATCACATATATACACTTTCACATTCATCACAT
1 CTTATCACATATATACACTTTCACATTCATCACAT
7693071 ATATAATTAG
Statistics
Matches: 118, Mismatches: 11, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
47 118 1.00
ACGTcount: A:0.29, C:0.31, G:0.08, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:7712328 original size:13 final size:13
Alignment explanation
Indices: 7712310--7712334 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
7712300 AACTAGATTT
7712310 TAACTAAGAAAAC
1 TAACTAAGAAAAC
7712323 TAACTAAGAAAA
1 TAACTAAGAAAA
7712335 TTAAAAGGTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.64, C:0.12, G:0.08, T:0.16
Consensus pattern (13 bp):
TAACTAAGAAAAC
Found at i:7731413 original size:12 final size:12
Alignment explanation
Indices: 7731396--7731422 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
7731386 ATTCCGAAGT
7731396 ATATATATATAC
1 ATATATATATAC
7731408 ATATATATATAC
1 ATATATATATAC
7731420 ATA
1 ATA
7731423 AGTATGCCCA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.52, C:0.07, G:0.00, T:0.41
Consensus pattern (12 bp):
ATATATATATAC
Found at i:7731953 original size:27 final size:28
Alignment explanation
Indices: 7731869--7731966 Score: 135
Period size: 27 Copynumber: 3.5 Consensus size: 28
7731859 CATGAGATTG
* * * *
7731869 GCACTAAGTGTGCGGGTTTAAATTGTACA
1 GCACTAAGTGTGCGAGTTT-GATTATATA
7731898 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
7731926 GCACTAAGTGTGCGAG-TTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
7731953 GCACTGAGTGTGCG
1 GCACTAAGTGTGCG
7731967 GACTTAATAT
Statistics
Matches: 64, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
27 24 0.38
28 22 0.34
29 18 0.28
ACGTcount: A:0.27, C:0.13, G:0.29, T:0.32
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:7731977 original size:27 final size:27
Alignment explanation
Indices: 7731897--7731979 Score: 96
Period size: 27 Copynumber: 3.0 Consensus size: 27
7731887 TAAATTGTAC
* *
7731897 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGA-CTTGAATATAT
* *
7731925 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGACTTGAATATAT
*
7731952 AGCACTGAGTGTGCGGACTT-AATATAT
1 AGCACTAAGTGTGC-GACTTGAATATAT
7731979 A
1 A
7731980 CTTTTGAATC
Statistics
Matches: 50, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
27 30 0.60
28 20 0.40
ACGTcount: A:0.30, C:0.12, G:0.25, T:0.33
Consensus pattern (27 bp):
AGCACTAAGTGTGCGACTTGAATATAT
Found at i:7734163 original size:19 final size:20
Alignment explanation
Indices: 7734119--7734165 Score: 60
Period size: 20 Copynumber: 2.4 Consensus size: 20
7734109 AAATGACGAA
*
7734119 GTGCCCCTGTTTGTACTTCG
1 GTGCCCCTGTTTGTAATTCG
**
7734139 GTGCCCCTGTTTG-AATTTT
1 GTGCCCCTGTTTGTAATTCG
7734158 GTGCCCCT
1 GTGCCCCT
7734166 AACTGCACGT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
19 11 0.46
20 13 0.54
ACGTcount: A:0.06, C:0.30, G:0.23, T:0.40
Consensus pattern (20 bp):
GTGCCCCTGTTTGTAATTCG
Found at i:7736439 original size:48 final size:49
Alignment explanation
Indices: 7736319--7736450 Score: 169
Period size: 49 Copynumber: 2.7 Consensus size: 49
7736309 CTTGTTGTGT
* *
7736319 GTCAGTGTAAGACCTGTCTGGGACATGGCATCGACACCGATAGATGAGA
1 GTCAGTGTAAGACCTGTCTGGGACACGGCATCGACACCCATAGATGAGA
* * * * * *
7736368 GCCAATGTAAGACTTGTCTGGGACACGGCATCGGC-CTCCTTATATGA-A
1 GTCAGTGTAAGACCTGTCTGGGACACGGCATCGACAC-CCATAGATGAGA
7736416 GTCAGTGTAAGACCTGTCTGGGACACGGCATCGAC
1 GTCAGTGTAAGACCTGTCTGGGACACGGCATCGAC
7736451 TTTGATGTGC
Statistics
Matches: 70, Mismatches: 12, Indels: 3
0.82 0.14 0.04
Matches are distributed among these distances:
48 33 0.47
49 37 0.53
ACGTcount: A:0.26, C:0.23, G:0.29, T:0.22
Consensus pattern (49 bp):
GTCAGTGTAAGACCTGTCTGGGACACGGCATCGACACCCATAGATGAGA
Found at i:7736440 original size:141 final size:139
Alignment explanation
Indices: 7736174--7736492 Score: 335
Period size: 141 Copynumber: 2.3 Consensus size: 139
7736164 ATTAGGAATA
* * * *
7736174 GATGTGTGCTAGTGTAAGACATGTCTGGGACAT-GCATCGGCCACATTATTAGAGCCAATGTAAG
1 GATGTGTGC-AGTGTAAGACCTGTCTGGGACATGGCATCGACCACATGATGAGAGCCAATGTAAG
* * *
7736238 ACATGTCTGGGACATGCATCGGCCTCGAGATATACAAGCTAGTGGAAAACCTATCTAGGACATGG
65 ACATGTCTGGGACAGGCATCGGCCTCCAGATATACAAGCTAGTGGAAAACCTATCTAGGACACGG
*
7736303 CGTC-AGC-TT
130 CATCGA-CTTT
*
7736312 GTTGTGTGTCAGTGTAAGACCTGTCTGGGACATGGCATCGA-CACCGATAGATGAGAGCCAATGT
1 GATGTGTG-CAGTGTAAGACCTGTCTGGGACATGGCATCGACCA-C-AT-GATGAGAGCCAATGT
* ** * * * * *
7736376 AAGACTTGTCTGGGACACGGCATCGGCCTCCTTATAT-GAAG-TCAGTGTAAGACCTGTCTGGGA
62 AAGACATGTCTGGGACA-GGCATCGGCCTCCAGATATACAAGCT-AGTGGAAAACCTATCTAGGA
7736439 CACGGCATCGACTTT
125 CACGGCATCGACTTT
7736454 GATGTGCTAGCCAGTGTAAGACCATGTCTGGGACATGGC
1 GATGTG-T-G-CAGTGTAAGACC-TGTCTGGGACATGGC
7736493 GTCGGCATCT
Statistics
Matches: 150, Mismatches: 19, Indels: 17
0.81 0.10 0.09
Matches are distributed among these distances:
138 31 0.21
139 8 0.05
140 3 0.02
141 56 0.37
142 23 0.15
143 1 0.01
144 13 0.09
145 15 0.10
ACGTcount: A:0.26, C:0.21, G:0.29, T:0.25
Consensus pattern (139 bp):
GATGTGTGCAGTGTAAGACCTGTCTGGGACATGGCATCGACCACATGATGAGAGCCAATGTAAGA
CATGTCTGGGACAGGCATCGGCCTCCAGATATACAAGCTAGTGGAAAACCTATCTAGGACACGGC
ATCGACTTT
Found at i:7736482 original size:48 final size:46
Alignment explanation
Indices: 7736321--7736488 Score: 167
Period size: 48 Copynumber: 3.5 Consensus size: 46
7736311 TGTTGTGTGT
* ***
7736321 CAGTGTAAGACCTGTCTGGGACATGGCATCGACACCGATAGATGAGAGC
1 CAGTGTAAGACCTGTCTGGGACACGGCATCGACTTTGAT-G-TGA-AGC
* * * * *
7736370 CAATGTAAGACTTGTCTGGGACACGGCATCGGCCTCCTT-ATATGAAGT
1 CAGTGTAAGACCTGTCTGGGACACGGCATC-GACT--TTGATGTGAAGC
*
7736418 CAGTGTAAGACCTGTCTGGGACACGGCATCGACTTTGATGTGCTAGC
1 CAGTGTAAGACCTGTCTGGGACACGGCATCGACTTTGATGTG-AAGC
7736465 CAGTGTAAGACCATGTCTGGGACA
1 CAGTGTAAGACC-TGTCTGGGACA
7736489 TGGCGTCGGC
Statistics
Matches: 98, Mismatches: 15, Indels: 13
0.78 0.12 0.10
Matches are distributed among these distances:
45 2 0.02
46 4 0.04
47 17 0.17
48 41 0.42
49 30 0.31
50 2 0.02
51 2 0.02
ACGTcount: A:0.26, C:0.23, G:0.29, T:0.23
Consensus pattern (46 bp):
CAGTGTAAGACCTGTCTGGGACACGGCATCGACTTTGATGTGAAGC
Found at i:7740766 original size:13 final size:13
Alignment explanation
Indices: 7740748--7740773 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
7740738 TTTTTTTCCA
7740748 AAAACCATTTGTT
1 AAAACCATTTGTT
7740761 AAAACCATTTGTT
1 AAAACCATTTGTT
7740774 TGGGTAATTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.08, T:0.38
Consensus pattern (13 bp):
AAAACCATTTGTT
Found at i:7758231 original size:9 final size:9
Alignment explanation
Indices: 7758217--7758242 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
7758207 TAAATATGAA
7758217 CTTTTACAT
1 CTTTTACAT
7758226 CTTTTACAT
1 CTTTTACAT
7758235 CTTTTACA
1 CTTTTACA
7758243 ATTTAGTCAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.23, C:0.23, G:0.00, T:0.54
Consensus pattern (9 bp):
CTTTTACAT
Found at i:7761536 original size:24 final size:24
Alignment explanation
Indices: 7761509--7761555 Score: 85
Period size: 24 Copynumber: 2.0 Consensus size: 24
7761499 TATAATTTAT
*
7761509 TCAATCTAATATTTTATTTTCTAA
1 TCAATCTAATATTTTACTTTCTAA
7761533 TCAATCTAATATTTTACTTTCTA
1 TCAATCTAATATTTTACTTTCTA
7761556 TCTTCCAAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.32, C:0.15, G:0.00, T:0.53
Consensus pattern (24 bp):
TCAATCTAATATTTTACTTTCTAA
Found at i:7764151 original size:40 final size:40
Alignment explanation
Indices: 7764099--7764251 Score: 186
Period size: 40 Copynumber: 3.9 Consensus size: 40
7764089 GTTAATTATA
7764099 CCTT-ATTGCACATACGTGCCCCTATTTGTACTTCAATAC
1 CCTTGATTGCACATACGTGCCCCTATTTGTACTTCAATAC
* * * * *
7764138 CCTTGATTACACATATGTGCCCTTGTTTGTACTTCGATAC
1 CCTTGATTGCACATACGTGCCCCTATTTGTACTTCAATAC
** *
7764178 CCTTGATTGCACATACGTGCCCCGGTTTGTACTTCAGTATC
1 CCTTGATTGCACATACGTGCCCCTATTTGTACTTCAATA-C
* *
7764219 CC-TGATTGCACATACGTG-TCCTATTTATACTTC
1 CCTTGATTGCACATACGTGCCCCTATTTGTACTTC
7764252 GGTAATTTCA
Statistics
Matches: 97, Mismatches: 15, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
39 15 0.15
40 79 0.81
41 3 0.03
ACGTcount: A:0.20, C:0.28, G:0.14, T:0.37
Consensus pattern (40 bp):
CCTTGATTGCACATACGTGCCCCTATTTGTACTTCAATAC
Found at i:7766087 original size:5 final size:5
Alignment explanation
Indices: 7766077--7766104 Score: 56
Period size: 5 Copynumber: 5.6 Consensus size: 5
7766067 CGGTTATATC
7766077 AAAAT AAAAT AAAAT AAAAT AAAAT AAA
1 AAAAT AAAAT AAAAT AAAAT AAAAT AAA
7766105 CCCTTCACTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 23 1.00
ACGTcount: A:0.82, C:0.00, G:0.00, T:0.18
Consensus pattern (5 bp):
AAAAT
Found at i:7768387 original size:36 final size:36
Alignment explanation
Indices: 7768340--7768412 Score: 146
Period size: 36 Copynumber: 2.0 Consensus size: 36
7768330 ACTATACATA
7768340 CCCATCAATTCTCAAATGCTTCCCTTTATCTTCGCT
1 CCCATCAATTCTCAAATGCTTCCCTTTATCTTCGCT
7768376 CCCATCAATTCTCAAATGCTTCCCTTTATCTTCGCT
1 CCCATCAATTCTCAAATGCTTCCCTTTATCTTCGCT
7768412 C
1 C
7768413 AACTTTTTCT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 37 1.00
ACGTcount: A:0.19, C:0.37, G:0.05, T:0.38
Consensus pattern (36 bp):
CCCATCAATTCTCAAATGCTTCCCTTTATCTTCGCT
Found at i:7769586 original size:24 final size:24
Alignment explanation
Indices: 7769558--7769603 Score: 67
Period size: 24 Copynumber: 1.9 Consensus size: 24
7769548 ATCAATTTGG
*
7769558 GTTTTAAATATT-AATGTGTATTGA
1 GTTTTAAAT-TTCAATGGGTATTGA
7769582 GTTTTAAATTTCAATGGGTATT
1 GTTTTAAATTTCAATGGGTATT
7769604 TGGGTTTAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
23 2 0.10
24 18 0.90
ACGTcount: A:0.30, C:0.02, G:0.17, T:0.50
Consensus pattern (24 bp):
GTTTTAAATTTCAATGGGTATTGA
Found at i:7769611 original size:24 final size:24
Alignment explanation
Indices: 7769552--7769613 Score: 65
Period size: 24 Copynumber: 2.5 Consensus size: 24
7769542 TAAATTATCA
*
7769552 ATTTGGGTTTTAAATATTAATGTGT
1 ATTTGGG-TTTAAATATTAATGGGT
*
7769577 A-TTGAGTTTTAAAT-TTCAATGGGT
1 ATTTG-GGTTTAAATATT-AATGGGT
7769601 ATTTGGGTTTAAA
1 ATTTGGGTTTAAA
7769614 GTTTAAATTT
Statistics
Matches: 31, Mismatches: 3, Indels: 7
0.76 0.07 0.17
Matches are distributed among these distances:
23 2 0.06
24 24 0.77
25 5 0.16
ACGTcount: A:0.29, C:0.02, G:0.21, T:0.48
Consensus pattern (24 bp):
ATTTGGGTTTAAATATTAATGGGT
Found at i:7777744 original size:14 final size:14
Alignment explanation
Indices: 7777699--7777746 Score: 51
Period size: 14 Copynumber: 3.3 Consensus size: 14
7777689 AAATTTTTTA
7777699 TTTTCCCCTAAAAT
1 TTTTCCCCTAAAAT
***
7777713 TTTTACTCCCTCTCAT
1 TTTT-C-CCCTAAAAT
7777729 TTTTCCCCTAAAAT
1 TTTTCCCCTAAAAT
7777743 TTTT
1 TTTT
7777747 ACTTCCTTCC
Statistics
Matches: 26, Mismatches: 6, Indels: 4
0.72 0.17 0.11
Matches are distributed among these distances:
14 14 0.54
15 2 0.08
16 10 0.38
ACGTcount: A:0.21, C:0.29, G:0.00, T:0.50
Consensus pattern (14 bp):
TTTTCCCCTAAAAT
Found at i:7777785 original size:22 final size:21
Alignment explanation
Indices: 7777760--7777802 Score: 52
Period size: 22 Copynumber: 2.0 Consensus size: 21
7777750 TCCTTCCCAT
7777760 CCCA-CCCTCCATCTACCCCAAA
1 CCCATCCC-CCATC-ACCCCAAA
*
7777782 CCCATCCCCCATCCCCCCAAA
1 CCCATCCCCCATCACCCCAAA
7777803 TTTTTTAATT
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
21 7 0.37
22 9 0.47
23 3 0.16
ACGTcount: A:0.26, C:0.63, G:0.00, T:0.12
Consensus pattern (21 bp):
CCCATCCCCCATCACCCCAAA
Found at i:7782931 original size:46 final size:48
Alignment explanation
Indices: 7782859--7782961 Score: 131
Period size: 48 Copynumber: 2.2 Consensus size: 48
7782849 GACAGGACAG
* *
7782859 GACA-GAAGTGAGCCATGCAAGTCCATA-T-CAGATATATGGCTTTGGA
1 GACAGGAA-TGAGCCATGCAAGCCCATATTACAGATATATGGCATTGGA
* * *
7782905 GACAGGAATGAGCCATGTAAGCCCATATTATATATATATGGCATTGGA
1 GACAGGAATGAGCCATGCAAGCCCATATTACAGATATATGGCATTGGA
7782953 GACAGGAAT
1 GACAGGAAT
7782962 AATTCGTGTA
Statistics
Matches: 49, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
46 21 0.43
47 4 0.08
48 24 0.49
ACGTcount: A:0.35, C:0.16, G:0.25, T:0.24
Consensus pattern (48 bp):
GACAGGAATGAGCCATGCAAGCCCATATTACAGATATATGGCATTGGA
Found at i:7786278 original size:15 final size:14
Alignment explanation
Indices: 7786257--7786292 Score: 54
Period size: 15 Copynumber: 2.5 Consensus size: 14
7786247 ATTTTTTATT
*
7786257 TATTATATTTTAAA
1 TATTATATATTAAA
7786271 TATATATATATTAAA
1 TAT-TATATATTAAA
7786286 TATTATA
1 TATTATA
7786293 AAAAATTTAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
14 7 0.35
15 13 0.65
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (14 bp):
TATTATATATTAAA
Found at i:7786745 original size:202 final size:202
Alignment explanation
Indices: 7786399--7786798 Score: 773
Period size: 202 Copynumber: 2.0 Consensus size: 202
7786389 GCCAAAGCTT
*
7786399 AGAAAACGGGCCTAAAATTTTGTTTGGGCCTAAGTCAAACTCAACTCGGTCCATAGTCACCTCTA
1 AGAAAACAGGCCTAAAATTTTGTTTGGGCCTAAGTCAAACTCAACTCGGTCCATAGTCACCTCTA
7786464 GTTCATTACAATAAACTTTCTATCTTTTCTTTTACTCTTCACATTTTATGTCGTTAGAATCCCTT
66 GTTCATTACAATAAACTTTCTATCTTTTCTTTTACTCTTCACATTTTATGTCGTTAGAATCCCTT
7786529 TTCGATTTATGTATTAAAATAATAAGAGTCTAATCTCCCCATATATATATATATAGAGAGAGAGA
131 TTCGATTTATGTATTAAAATAATAAGAGTCTAATCTCCCCATATATATATATATAGAGAGAGAGA
7786594 GAGAGAG
196 GAGAGAG
*
7786601 AGAAAACAGGCCTAAAATTTTGTTTGGGCCTAAGTCAAACTCAACTCGGTCCATGGTCACCTCTA
1 AGAAAACAGGCCTAAAATTTTGTTTGGGCCTAAGTCAAACTCAACTCGGTCCATAGTCACCTCTA
*
7786666 GTTCATTACAATAAACTTTCTATCTTTTCTTTTACTCTTCACATTTTATGTCGTTATAATCCCTT
66 GTTCATTACAATAAACTTTCTATCTTTTCTTTTACTCTTCACATTTTATGTCGTTAGAATCCCTT
7786731 TTCGATTTATGTATTAAAATAATAAGAGTCTAATCTCCCCATATATATATATATAGAGAGAGAGA
131 TTCGATTTATGTATTAAAATAATAAGAGTCTAATCTCCCCATATATATATATATAGAGAGAGAGA
7786796 GAG
196 GAG
7786799 GGGAGGGGGA
Statistics
Matches: 195, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
202 195 1.00
ACGTcount: A:0.32, C:0.18, G:0.14, T:0.36
Consensus pattern (202 bp):
AGAAAACAGGCCTAAAATTTTGTTTGGGCCTAAGTCAAACTCAACTCGGTCCATAGTCACCTCTA
GTTCATTACAATAAACTTTCTATCTTTTCTTTTACTCTTCACATTTTATGTCGTTAGAATCCCTT
TTCGATTTATGTATTAAAATAATAAGAGTCTAATCTCCCCATATATATATATATAGAGAGAGAGA
GAGAGAG
Found at i:7786848 original size:16 final size:16
Alignment explanation
Indices: 7786827--7786857 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
7786817 GGGAGGAAAG
*
7786827 GGAGGGAGGGAGAGAT
1 GGAGGGAGAGAGAGAT
7786843 GGAGGGAGAGAGAGA
1 GGAGGGAGAGAGAGA
7786858 GAGGAGTATA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.00, G:0.61, T:0.03
Consensus pattern (16 bp):
GGAGGGAGAGAGAGAT
Found at i:7787941 original size:13 final size:13
Alignment explanation
Indices: 7787923--7787947 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
7787913 GTAAAGCAGT
7787923 TAAAAATCCAAAG
1 TAAAAATCCAAAG
7787936 TAAAAATCCAAA
1 TAAAAATCCAAA
7787948 ACAGTCCAAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.64, C:0.16, G:0.04, T:0.16
Consensus pattern (13 bp):
TAAAAATCCAAAG
Found at i:7797672 original size:12 final size:12
Alignment explanation
Indices: 7797655--7797686 Score: 55
Period size: 12 Copynumber: 2.7 Consensus size: 12
7797645 GACATGGCCT
7797655 ACCACACGAGTG
1 ACCACACGAGTG
*
7797667 ACCACATGAGTG
1 ACCACACGAGTG
7797679 ACCACACG
1 ACCACACG
7797687 CCCGTGTGGT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.34, C:0.34, G:0.22, T:0.09
Consensus pattern (12 bp):
ACCACACGAGTG
Found at i:7808947 original size:45 final size:45
Alignment explanation
Indices: 7808887--7809057 Score: 227
Period size: 45 Copynumber: 3.7 Consensus size: 45
7808877 TATGAGAGCT
** *
7808887 AGTGTAAGATGATGTCTGGGACATGGCATCGGCTTGATATGTGTC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGACTTGATATGTGTC
*
7808932 AGTGTAAGACCATGTCTGGGACATGGCATTGACTTGATATGTGTC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGACTTGATATGTGTC
* *
7808977 AGTGTAAGACCATATCTGGGACATGGCATCGACTTTA-ATGTGTGAGC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGACTTGATATGTGT---C
* *
7809024 GAGTGTAAGACCATGTCCGGGACATGGCGTCGAC
1 -AGTGTAAGACCATGTCTGGGACATGGCATCGAC
7809058 ACCTTACCTT
Statistics
Matches: 112, Mismatches: 10, Indels: 5
0.88 0.08 0.04
Matches are distributed among these distances:
44 6 0.05
45 75 0.67
47 1 0.01
48 30 0.27
ACGTcount: A:0.25, C:0.17, G:0.31, T:0.27
Consensus pattern (45 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCGACTTGATATGTGTC
Found at i:7814876 original size:30 final size:30
Alignment explanation
Indices: 7814818--7814876 Score: 73
Period size: 30 Copynumber: 2.0 Consensus size: 30
7814808 TTTACGAGCC
**
7814818 TAGGGGCAAAATCATAATTTTGTGAAAGTT
1 TAGGGGCAAAATCATAATTTTGCCAAAGTT
** *
7814848 TAGGGGCAAAATGGTTATTTTGCCAAAGT
1 TAGGGGCAAAATCATAATTTTGCCAAAGT
7814877 ATGAATTGTG
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.34, C:0.08, G:0.25, T:0.32
Consensus pattern (30 bp):
TAGGGGCAAAATCATAATTTTGCCAAAGTT
Found at i:7826969 original size:18 final size:17
Alignment explanation
Indices: 7826946--7826992 Score: 58
Period size: 17 Copynumber: 2.7 Consensus size: 17
7826936 TTATTTTTCT
7826946 TTTATTAAGTTTTTAAGA
1 TTTATT-AGTTTTTAAGA
*
7826964 TTTATTCGTTTTTAAGA
1 TTTATTAGTTTTTAAGA
* *
7826981 TTCATTTGTTTT
1 TTTATTAGTTTT
7826993 CCTTTTCAAA
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
17 20 0.77
18 6 0.23
ACGTcount: A:0.23, C:0.04, G:0.11, T:0.62
Consensus pattern (17 bp):
TTTATTAGTTTTTAAGA
Found at i:7826975 original size:16 final size:17
Alignment explanation
Indices: 7826954--7826992 Score: 60
Period size: 17 Copynumber: 2.3 Consensus size: 17
7826944 CTTTTATTAA
*
7826954 GTTTTTAAGATTTATTC
1 GTTTTTAAGATTCATTC
*
7826971 GTTTTTAAGATTCATTT
1 GTTTTTAAGATTCATTC
7826988 GTTTT
1 GTTTT
7826993 CCTTTTCAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.21, C:0.05, G:0.13, T:0.62
Consensus pattern (17 bp):
GTTTTTAAGATTCATTC
Found at i:7839184 original size:86 final size:90
Alignment explanation
Indices: 7839062--7839235 Score: 205
Period size: 86 Copynumber: 2.0 Consensus size: 90
7839052 TTTTATTAAT
* * * * *
7839062 TCACCGGCATTCAGCCTGCTAGGTTTTAAAAACCCGAAT-TTAT-TCACCGGCATT-TTGCCTGC
1 TCACCGGCATTCAGCCTGCTAGGTCTCAAAAACCCGAATAATATCTCACCAGCATTATAGCCTGC
*
7839124 TAGGCT-CGAGGCCCGAAAAATATC
66 TAGGCTCCAAGGCCCGAAAAATATC
* ** *
7839148 TCACCGGCATTATAGCCTGCTAGG-CTCAAAGGCCCGAATAATGTCTCACCAGCATTATAGCCTG
1 TCACCGGCATT-CAGCCTGCTAGGTCTCAAAAACCCGAATAATATCTCACCAGCATTATAGCCTG
*
7839212 CTAGGCTCCAAGGCCCGAATAATA
65 CTAGGCTCCAAGGCCCGAAAAATA
7839236 CTGTACAACA
Statistics
Matches: 72, Mismatches: 11, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
86 22 0.31
87 13 0.18
88 10 0.14
89 13 0.18
90 14 0.19
ACGTcount: A:0.27, C:0.29, G:0.20, T:0.24
Consensus pattern (90 bp):
TCACCGGCATTCAGCCTGCTAGGTCTCAAAAACCCGAATAATATCTCACCAGCATTATAGCCTGC
TAGGCTCCAAGGCCCGAAAAATATC
Found at i:7839195 original size:45 final size:44
Alignment explanation
Indices: 7839105--7839235 Score: 192
Period size: 45 Copynumber: 3.0 Consensus size: 44
7839095 CCGAATTTAT
* * *
7839105 TCACCGGCATT-TTGCCTGCTAGGCTCGAGGCCCGAAAAATATC
1 TCACCGGCATTATAGCCTGCTAGGCTCAAGGCCCGAATAATATC
*
7839148 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAATGTC
1 TCACCGGCATTATAGCCTGCTAGGCTC-AAGGCCCGAATAATATC
*
7839193 TCACCAGCATTATAGCCTGCTAGGCTCCAAGGCCCGAATAATA
1 TCACCGGCATTATAGCCTGCTAGGCT-CAAGGCCCGAATAATA
7839236 CTGTACAACA
Statistics
Matches: 79, Mismatches: 6, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
43 11 0.14
44 14 0.18
45 53 0.67
46 1 0.01
ACGTcount: A:0.27, C:0.30, G:0.21, T:0.22
Consensus pattern (44 bp):
TCACCGGCATTATAGCCTGCTAGGCTCAAGGCCCGAATAATATC
Found at i:7849689 original size:27 final size:27
Alignment explanation
Indices: 7849659--7849836 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
7849649 ATATTGAGTC
* * * *
7849659 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
7849686 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
7849713 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
7849741 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
7849768 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
7849795 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
7849822 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
7849837 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:7849798 original size:82 final size:81
Alignment explanation
Indices: 7849680--7849835 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
7849670 TGCTATATAA
* *
7849680 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
7849745 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
7849762 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
7849826 CACTTAGTGC
65 CACTTAGTGC
7849836 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:7857754 original size:27 final size:27
Alignment explanation
Indices: 7857724--7857901 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
7857714 ATATTGAGTC
* * * *
7857724 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
7857751 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
7857778 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
7857806 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
7857833 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
7857860 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
7857887 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
7857902 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:7857863 original size:82 final size:81
Alignment explanation
Indices: 7857745--7857900 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
7857735 TGCTATATAA
* *
7857745 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
7857810 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
7857827 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
7857891 CACTTAGTGC
65 CACTTAGTGC
7857901 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:7865817 original size:27 final size:27
Alignment explanation
Indices: 7865787--7865965 Score: 191
Period size: 27 Copynumber: 6.6 Consensus size: 27
7865777 ATATTGAGCC
* * *
7865787 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAACT
* * *
7865814 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAACT
7865841 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTC-AACT
** * *
7865869 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAACT
* **
7865896 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAACT
*
7865923 CGCACACTTAGTGCAACATAGTCATA-T
1 CGCACACTTAGTGCTACATAGTCA-ACT
7865950 CGCACACTTAGTGCTA
1 CGCACACTTAGTGCTA
7865966 TACAATTTAA
Statistics
Matches: 130, Mismatches: 18, Indels: 8
0.83 0.12 0.05
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAACT
Found at i:7865926 original size:82 final size:81
Alignment explanation
Indices: 7865808--7865963 Score: 224
Period size: 82 Copynumber: 1.9 Consensus size: 81
7865798 TGCTATATAA
* *
7865808 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
7865873 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * ** *
7865890 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCATATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
7865954 CACTTAGTGC
65 CACTTAGTGC
7865964 TATACAATTT
Statistics
Matches: 66, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
81 16 0.24
82 50 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.28
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:7866532 original size:13 final size:13
Alignment explanation
Indices: 7866514--7866538 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
7866504 TACTAAATTT
7866514 TCATGGATTCAAG
1 TCATGGATTCAAG
7866527 TCATGGATTCAA
1 TCATGGATTCAA
7866539 TATACCATTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.20, T:0.32
Consensus pattern (13 bp):
TCATGGATTCAAG
Found at i:7873407 original size:34 final size:34
Alignment explanation
Indices: 7873364--7873431 Score: 136
Period size: 34 Copynumber: 2.0 Consensus size: 34
7873354 TTGATTTAGA
7873364 GTCAGAATAATAAGTGAAGTCTAGGTGGATTCTT
1 GTCAGAATAATAAGTGAAGTCTAGGTGGATTCTT
7873398 GTCAGAATAATAAGTGAAGTCTAGGTGGATTCTT
1 GTCAGAATAATAAGTGAAGTCTAGGTGGATTCTT
7873432 TCTTGGGTGT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 34 1.00
ACGTcount: A:0.32, C:0.09, G:0.26, T:0.32
Consensus pattern (34 bp):
GTCAGAATAATAAGTGAAGTCTAGGTGGATTCTT
Found at i:7878997 original size:22 final size:23
Alignment explanation
Indices: 7878963--7879022 Score: 56
Period size: 22 Copynumber: 2.7 Consensus size: 23
7878953 AAGTCTTCAA
*
7878963 AAATAGATAAAAATAAA-AATAA-
1 AAATAAAT-AAAATAAATAATAAT
*
7878985 AATTTAAATAAAA-AAATAATAAT
1 AA-ATAAATAAAATAAATAATAAT
7879008 AAATAAAT-AAATAAA
1 AAATAAATAAAATAAA
7879023 GGGACTCAGA
Statistics
Matches: 31, Mismatches: 3, Indels: 8
0.74 0.07 0.19
Matches are distributed among these distances:
21 6 0.19
22 19 0.61
23 6 0.19
ACGTcount: A:0.75, C:0.00, G:0.02, T:0.23
Consensus pattern (23 bp):
AAATAAATAAAATAAATAATAAT
Found at i:7879010 original size:18 final size:18
Alignment explanation
Indices: 7878961--7879021 Score: 65
Period size: 18 Copynumber: 3.4 Consensus size: 18
7878951 ATAAGTCTTC
7878961 AAAAATAGATAA-AAATAA
1 AAAAATA-ATAATAAATAA
*
7878979 AAATAA-AAT-TTAAATAA
1 AAA-AATAATAATAAATAA
7878996 AAAAATAATAATAAATAA
1 AAAAATAATAATAAATAA
*
7879014 ATAAATAA
1 AAAAATAA
7879022 AGGGACTCAG
Statistics
Matches: 36, Mismatches: 3, Indels: 8
0.77 0.06 0.17
Matches are distributed among these distances:
16 2 0.06
17 14 0.39
18 18 0.50
19 2 0.06
ACGTcount: A:0.75, C:0.00, G:0.02, T:0.23
Consensus pattern (18 bp):
AAAAATAATAATAAATAA
Found at i:7882280 original size:72 final size:72
Alignment explanation
Indices: 7882163--7882451 Score: 461
Period size: 72 Copynumber: 4.0 Consensus size: 72
7882153 GTTTGCCTGA
* *
7882163 TGTCTCAAGGTCGTGGGAACGGTGCTCCAGTCGGAGGGAATGAAGGGAGCTTCGTCGCTGACGGC
1 TGTCTCAAGGTCGTGGGAACGGTGCTCCCGTCGGAGGGAATGAAGGGAGCTTCGTCGCTGGCGGC
7882228 CCTAGAG
66 CCTAGAG
* *
7882235 TGTCTCAAGGTTGTGGGAATGGTGCTCCCGTCGGAGGGAATGAAGGGAGCTTCGTCGCTGGCGGC
1 TGTCTCAAGGTCGTGGGAACGGTGCTCCCGTCGGAGGGAATGAAGGGAGCTTCGTCGCTGGCGGC
7882300 CCTAGAG
66 CCTAGAG
* * * * * *
7882307 TGTCTCAAGGTTGTGGGAACGGTACTCCCTTAGGAGGGAATGAAGGGAGCTTAGTCACTGGCGGC
1 TGTCTCAAGGTCGTGGGAACGGTGCTCCCGTCGGAGGGAATGAAGGGAGCTTCGTCGCTGGCGGC
7882372 CCTAGAG
66 CCTAGAG
* * *
7882379 TGTCTCAAGGTCGTGGGAACGGTGCTCCCGTCGGAGGGAATAAAGGGAGCTTCGTTGCTGGTGGC
1 TGTCTCAAGGTCGTGGGAACGGTGCTCCCGTCGGAGGGAATGAAGGGAGCTTCGTCGCTGGCGGC
7882444 CCTAGAG
66 CCTAGAG
7882451 T
1 T
7882452 ATATGTTATT
Statistics
Matches: 198, Mismatches: 19, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
72 198 1.00
ACGTcount: A:0.19, C:0.21, G:0.38, T:0.22
Consensus pattern (72 bp):
TGTCTCAAGGTCGTGGGAACGGTGCTCCCGTCGGAGGGAATGAAGGGAGCTTCGTCGCTGGCGGC
CCTAGAG
Found at i:7883349 original size:25 final size:23
Alignment explanation
Indices: 7883297--7883351 Score: 58
Period size: 25 Copynumber: 2.3 Consensus size: 23
7883287 TATAAATAGT
7883297 AATAGTGTTAGAAATATACTATA
1 AATAGTGTTAGAAATATACTATA
* *
7883320 TATAGTGTTTGAAGTATATAC-ATAA
1 AATAGTGTTAGAA--ATATACTAT-A
7883345 AATAGTG
1 AATAGTG
7883352 AAAATATAAC
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
23 11 0.42
24 2 0.08
25 13 0.50
ACGTcount: A:0.44, C:0.04, G:0.16, T:0.36
Consensus pattern (23 bp):
AATAGTGTTAGAAATATACTATA
Found at i:7883471 original size:22 final size:24
Alignment explanation
Indices: 7883413--7883480 Score: 77
Period size: 25 Copynumber: 2.9 Consensus size: 24
7883403 ATAGATATAA
* *
7883413 AAAAATATGTACATAATATAGTGT
1 AAAAATATATACATAATATAATGT
*
7883437 AAAAAATACATACATAATATAAT-T
1 -AAAAATATATACATAATATAATGT
*
7883461 -AAAATATATACATAAGATAA
1 AAAAATATATACATAATATAA
7883481 CATGTAGAAA
Statistics
Matches: 38, Mismatches: 5, Indels: 3
0.83 0.11 0.07
Matches are distributed among these distances:
22 18 0.47
24 1 0.03
25 19 0.50
ACGTcount: A:0.59, C:0.06, G:0.06, T:0.29
Consensus pattern (24 bp):
AAAAATATATACATAATATAATGT
Found at i:7883525 original size:25 final size:24
Alignment explanation
Indices: 7883497--7883628 Score: 110
Period size: 23 Copynumber: 5.6 Consensus size: 24
7883487 GAAAAAATAT
*
7883497 ATATATAAATAATATAGTATTAAAG
1 ATATATACATAATATAGTATT-AAG
* *
7883522 ATATATACATAAAATAGTA-TAAT
1 ATATATACATAATATAGTATTAAG
* * *
7883545 ATATATACGTAATATAGAATTTAG
1 ATATATACATAATATAGTATTAAG
* * *
7883569 A-ATATACCTAATATATTA-AAAG
1 ATATATACATAATATAGTATTAAG
* *
7883591 AATATATATATAATATAATATTAAG
1 -ATATATACATAATATAGTATTAAG
*
7883616 AAATATA-ATAATA
1 ATATATACATAATA
7883629 AAAAAAGAGA
Statistics
Matches: 85, Mismatches: 18, Indels: 10
0.75 0.16 0.09
Matches are distributed among these distances:
22 2 0.02
23 39 0.46
24 24 0.28
25 20 0.24
ACGTcount: A:0.55, C:0.03, G:0.06, T:0.36
Consensus pattern (24 bp):
ATATATACATAATATAGTATTAAG
Found at i:7883525 original size:29 final size:28
Alignment explanation
Indices: 7883425--7883534 Score: 97
Period size: 29 Copynumber: 4.0 Consensus size: 28
7883415 AAATATGTAC
* *
7883425 ATAATATAGT-GTAAAA-A-ATACATAC
1 ATAATATAGTATTAAAATATATACATAA
7883450 ATAATATA--ATTAAAATATATACATAA
1 ATAATATAGTATTAAAATATATACATAA
* ** *
7883476 GATAACAT-GTAGAAAAAATATATATATAA
1 -ATAATATAGTA-TTAAAATATATACATAA
7883505 ATAATATAGTATTAAAGATATATACATAA
1 ATAATATAGTATTAAA-ATATATACATAA
7883534 A
1 A
7883535 ATAGTATAAT
Statistics
Matches: 66, Mismatches: 10, Indels: 14
0.73 0.11 0.16
Matches are distributed among these distances:
24 5 0.08
25 9 0.14
26 7 0.11
27 6 0.09
28 10 0.15
29 29 0.44
ACGTcount: A:0.58, C:0.05, G:0.06, T:0.31
Consensus pattern (28 bp):
ATAATATAGTATTAAAATATATACATAA
Found at i:7883537 original size:27 final size:27
Alignment explanation
Indices: 7883425--7883558 Score: 81
Period size: 29 Copynumber: 5.1 Consensus size: 27
7883415 AAATATGTAC
*
7883425 ATAATATAGT-GTAAAA-A-ATACATA
1 ATAATATAGTATTAAAATATATACATA
7883449 CATAATATA--ATTAAAATATATACATAA
1 -ATAATATAGTATTAAAATATATACAT-A
* ** *
7883476 GATAACAT-GTAGAAAAAATATATATATAA
1 -ATAATATAGTA-TTAAAATATATACAT-A
7883505 ATAATATAGTATTAAAGATATATACAT-
1 ATAATATAGTATTAAA-ATATATACATA
* *
7883532 A-AA-ATAGTA-TAATATATATACGTA
1 ATAATATAGTATTAAAATATATACATA
7883556 ATA
1 ATA
7883559 TAGAATTTAG
Statistics
Matches: 86, Mismatches: 12, Indels: 22
0.72 0.10 0.18
Matches are distributed among these distances:
23 9 0.10
24 9 0.10
25 16 0.19
26 8 0.09
27 8 0.09
28 10 0.12
29 26 0.30
ACGTcount: A:0.57, C:0.04, G:0.07, T:0.32
Consensus pattern (27 bp):
ATAATATAGTATTAAAATATATACATA
Found at i:7883604 original size:24 final size:23
Alignment explanation
Indices: 7883577--7883628 Score: 61
Period size: 24 Copynumber: 2.2 Consensus size: 23
7883567 AGAATATACC
*
7883577 TAATATATTA-AAAGAATATATATA
1 TAATATAATATAAAGAA-ATATA-A
*
7883601 TAATATAATATTAAGAAATATAA
1 TAATATAATATAAAGAAATATAA
7883624 TAATA
1 TAATA
7883629 AAAAAAGAGA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
23 6 0.24
24 14 0.56
25 5 0.20
ACGTcount: A:0.60, C:0.00, G:0.04, T:0.37
Consensus pattern (23 bp):
TAATATAATATAAAGAAATATAA
Found at i:7883950 original size:16 final size:16
Alignment explanation
Indices: 7883912--7883950 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
7883902 TCTCCAAAAA
*
7883912 AAAAACTAGCCTCTCC
1 AAAAACTAGCCTCTAC
*
7883928 AAAAACTAGCCTTTAC
1 AAAAACTAGCCTCTAC
*
7883944 AATAACT
1 AAAAACT
7883951 CTTCTCCTTG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.44, C:0.28, G:0.05, T:0.23
Consensus pattern (16 bp):
AAAAACTAGCCTCTAC
Found at i:7884145 original size:30 final size:30
Alignment explanation
Indices: 7884109--7884176 Score: 118
Period size: 30 Copynumber: 2.3 Consensus size: 30
7884099 AGGTACAAGT
7884109 GGTGGTGGAGCAAGTGTGGCTAGTAGAGTA
1 GGTGGTGGAGCAAGTGTGGCTAGTAGAGTA
* *
7884139 GGTGGTGGAGCAAGTGTGGCTAGTGGAGTT
1 GGTGGTGGAGCAAGTGTGGCTAGTAGAGTA
7884169 GGTGGTGG
1 GGTGGTGG
7884177 CAAAGGCTAG
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
30 36 1.00
ACGTcount: A:0.18, C:0.06, G:0.51, T:0.25
Consensus pattern (30 bp):
GGTGGTGGAGCAAGTGTGGCTAGTAGAGTA
Found at i:7885179 original size:90 final size:90
Alignment explanation
Indices: 7884892--7885465 Score: 552
Period size: 90 Copynumber: 6.4 Consensus size: 90
7884882 ACGTGAGCCA
* *
7884892 AGGCTCAACTCACTTCTCGCAATATGAGTTGA--TTTTT-A-AAACA-AAATTTGTAAAAAAAT-
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGACAAACATAAA-TTGAAAAAAAATA
** * * * *
7884951 TTTTGAAAATACCTCGGTATGTGACCCG
65 AATTGAAAATACCTCAG--CGTGTCCTG
* * *
7884979 AGGCTAAACTCGCCTCTCGTAATATGAGTTGA--TTTTTG-CAAAGCATAAATTGAAAAAAAAAT
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGACAAA-CATAAATTG-AAAAAAAAT
* * *
7885041 CAATTGAAAATACCTCGGCGTGTGATCTG
64 AAATTGAAAATACCTCAGCGTGT--CCTG
*
7885070 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGACATACATAAATTGAAAAAAAATAA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGACAAACATAAATTGAAAAAAAATAA
* *
7885135 ATTGAGAATATCTCAGCGTGTCCTG
66 ATTGAAAATACCTCAGCGTGTCCTG
* *
7885160 AGGCTGAACTCACCTCTCGCAATATGAGTTGATTTTTTTGACATACATAAATTGAAAAAAAATAA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGACAAACATAAATTGAAAAAAAATAA
* *
7885225 ATTGAGAATATCTCAGCGTGTCCTG
66 ATTGAAAATACCTCAGCGTGTCCTG
* * * *
7885250 AGGCTGAACTCACCTCTCGCAATATGAGTTGATTTTTTGGAAAAACA-AAATTTGAAAACAGAAT
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGACAAACATAAA-TTGAAAA-AAAAT
** *
7885314 ---TTGAAAATACCTCAGCGTGTGAGTCA
64 AAATTGAAAATACCTCAGCGTGT-CCT-G
* * * * * * * *
7885340 AGGCTTAACTCATCACTCGCAATATGAGCTGATTTTTTTGA-AACACAGAAATTG-AAGAACAGA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGACAA-ACATAAATTGAAAAAAAATA
* * *
7885403 AATGGAAAACACCTCAGC--GTCTTG
65 AATTGAAAATACCTCAGCGTGTCCTG
* *
7885427 AGGTTCAACTCACCTCTCGCAATATGAGCTGATTTTTTT
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTT
7885466 TGAAAGAGAG
Statistics
Matches: 419, Mismatches: 48, Indels: 40
0.83 0.09 0.08
Matches are distributed among these distances:
87 68 0.16
88 24 0.06
89 18 0.04
90 196 0.47
91 67 0.16
92 28 0.07
93 15 0.04
94 3 0.01
ACGTcount: A:0.35, C:0.18, G:0.17, T:0.30
Consensus pattern (90 bp):
AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGACAAACATAAATTGAAAAAAAATAA
ATTGAAAATACCTCAGCGTGTCCTG
Found at i:7885309 original size:13 final size:13
Alignment explanation
Indices: 7885291--7885320 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
7885281 ATTTTTTGGA
7885291 AAAACAAAATTTG
1 AAAACAAAATTTG
*
7885304 AAAACAGAATTTG
1 AAAACAAAATTTG
7885317 AAAA
1 AAAA
7885321 TACCTCAGCG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.63, C:0.07, G:0.10, T:0.20
Consensus pattern (13 bp):
AAAACAAAATTTG
Found at i:7885687 original size:73 final size:72
Alignment explanation
Indices: 7885391--7886002 Score: 664
Period size: 73 Copynumber: 8.3 Consensus size: 72
7885381 AACACAGAAA
* * * *
7885391 TTGAAGAACAGAAATGGAAAACACCTCAGCGTCTTGAGGTTCAACTCACCTCTCGCAATATGAGC
1 TTGAA-AACAGAAATTGAAAATACCTCAGCGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGT
*
7885456 TGATTTTTT
65 TGA-ATTTT
* * *
7885465 TTGAAAGAGAGAAATTGAAAATACCTCAACGTGTCTTGAGGTTCAACTCACCTCTCGCAATATGA
1 TTGAAA-ACAGAAATTGAAAATACCTC-A-GCGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
* *
7885530 GCTGATTTTT
63 GTTGAATTTT
*
7885540 TTGGAAGACAGAAATTGAAAATACCTCAGCGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
1 TT-GAAAACAGAAATTGAAAATACCTCAGC--GTCTTGAGGCTCAACTCACCTCTCGCAATATGA
7885605 GTTG-A-TTT
63 GTTGAATTTT
* * * * * *
7885613 TTGACAAACAAAAATTGGAATTACCTCAGCGTCTTGAGGTTCAACTCACCTTTCGCAATATGAGC
1 TTGA-AAACAGAAATTGAAAATACCTCAGCGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGT
7885678 TGAATTTTT
65 TGAA-TTTT
*
7885687 TTGAAAGACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
1 TTGAAA-ACAGAAATTGAAAATACCTC-A-GCGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
7885752 GTTG-A-TTT
63 GTTGAATTTT
* * * *
7885760 TTGACAAACAAAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTATCGCAATATGA
1 TTGA-AAACAGAAATTGAAAATACCTCAGC--GTCTTGAGGCTCAACTCACCTCTCGCAATATGA
*
7885825 GTTGATTTTT
63 GTTGAATTTT
* *
7885835 TTGAAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTTGCAATATGA
1 TTG-AAAACAGAAATTGAAAATACCTC-A-GCGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
*
7885900 GTTG-A-GTT
63 GTTGAATTTT
* * * *
7885908 TTGACAAACAAAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACTTCTCGCAATATGA
1 TTGA-AAACAGAAATTGAAAATACCTCAGC--GTCTTGAGGCTCAACTCACCTCTCGCAATATGA
7885973 GTTG-ATTCTT
63 GTTGAATT-TT
* *
7885983 TT-AGAAACATAAATTAAAAA
1 TTGA-AAACAGAAATTGAAAA
7886003 AACGAAAATT
Statistics
Matches: 463, Mismatches: 49, Indels: 52
0.82 0.09 0.09
Matches are distributed among these distances:
71 36 0.08
72 6 0.01
73 150 0.32
74 63 0.14
75 128 0.28
76 79 0.17
77 1 0.00
ACGTcount: A:0.33, C:0.20, G:0.17, T:0.30
Consensus pattern (72 bp):
TTGAAAACAGAAATTGAAAATACCTCAGCGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTT
GAATTTT
Found at i:7885838 original size:222 final size:224
Alignment explanation
Indices: 7885391--7886069 Score: 856
Period size: 222 Copynumber: 3.0 Consensus size: 224
7885381 AACACAGAAA
* * * * *
7885391 TTGAAGAACAGAAATGGAAAACACCTCAGCGTCTTGAGGTTCAACTCACCTCTCGCAATATGAGC
1 TTGAAAAACAAAAATTGAAAATACCTCAGCGTCTTGAGGTTCAACTCACCTTTCGCAATATGAGC
* * *
7885456 TGATTTTTTTTGAAAGAGAGAAATTGAAAATACCTCAACGTGTCTTGAGGTTCAACTCACCTCTC
66 TGAATTTTTTTGAAAGACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTC
* * * * *
7885521 GCAATATGAGCTGATTTTTTTGGA-AGACAGAAATTGAAAATACCTCAGCGTGTCTTGAGGCTCA
131 GCAATATGAGTTGA-TTTTTTAGACAAACAAAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCA
7885585 ACTCACCTCTCGCAATATGAGTTGA--TTT
195 ACTCACCTCTCGCAATATGAGTTGATTTTT
* * *
7885613 TTGACAAACAAAAATTGGAATTACCTCAGCGTCTTGAGGTTCAACTCACCTTTCGCAATATGAGC
1 TTGAAAAACAAAAATTGAAAATACCTCAGCGTCTTGAGGTTCAACTCACCTTTCGCAATATGAGC
7885678 TGAATTTTTTTGAAAGACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTC
66 TGAATTTTTTTGAAAGACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTC
*
7885743 GCAATATGAGTTGA-TTTTT-GACAAACAAAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAA
131 GCAATATGAGTTGATTTTTTAGACAAACAAAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAA
*
7885806 CTCACCTATCGCAATATGAGTTGATTTTT
196 CTCACCTCTCGCAATATGAGTTGATTTTT
* * *
7885835 TTGAAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTT-GCAATATG
1 TTGAAAAACAAAAATTGAAAATACCTC-A-GCGTCTTGAGGTTCAACTCACCT-TTCGCAATATG
* * * * * * *
7885899 AGTTG-A--GTTTTGACAA-ACAAAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACT
63 AGCTGAATTTTTTTGA-AAGACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACC
*
7885960 TCTCGCAATATGAGTTGATTCTTTTAGAAACATAAATTAAAAAAACGAAAATTGAAAATACCTCA
127 TCTCGCAATATGAGTTGATT-TTTTAG--AC-----------AAACAAAAATTGAAAATACCTCA
7886025 GCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT
178 GCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT
7886070 GAAAAGCAGA
Statistics
Matches: 401, Mismatches: 33, Indels: 31
0.86 0.07 0.07
Matches are distributed among these distances:
219 2 0.00
220 65 0.16
221 64 0.16
222 161 0.40
223 6 0.01
224 34 0.08
225 2 0.00
226 2 0.00
237 65 0.16
ACGTcount: A:0.33, C:0.20, G:0.17, T:0.29
Consensus pattern (224 bp):
TTGAAAAACAAAAATTGAAAATACCTCAGCGTCTTGAGGTTCAACTCACCTTTCGCAATATGAGC
TGAATTTTTTTGAAAGACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTC
GCAATATGAGTTGATTTTTTAGACAAACAAAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAA
CTCACCTCTCGCAATATGAGTTGATTTTT
Found at i:7885912 original size:148 final size:148
Alignment explanation
Indices: 7885391--7886069 Score: 882
Period size: 148 Copynumber: 4.5 Consensus size: 148
7885381 AACACAGAAA
* * * * *
7885391 TTGAAGAACAGAAATGGAAAACACCTC-A-GCGTCTTGAGGTTCAACTCACCTCTCGCAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
* * * * * * *
7885454 GCTGATTTTTTTTGA-AAGAGAGAAATTGAAAATACCTCAACGTGTCTTGAGGTTCAACTCACCT
66 GTTGA---TTTTTGACAA-ACAAAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCT
7885518 CTCGCAATATGAGCTGATTTTT
127 CTCGCAATATGAGCTGATTTTT
* * *
7885540 TTGGAAGACAGAAATTGAAAATACCTCAGCGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
* * * *
7885605 GTTGATTTTTGACAAACAAAAATTGGAATTACCTCAGC--GTCTTGAGGTTCAACTCACCTTTCG
66 GTTGATTTTTGACAAACAAAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCG
7885668 CAATATGAGCTGAATTTTT
131 CAATATGAGCTG-ATTTTT
*
7885687 TTGAAAGACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
*
7885752 GTTGATTTTTGACAAACAAAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTATCG
66 GTTGATTTTTGACAAACAAAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCG
*
7885817 CAATATGAGTTGATTTTT
131 CAATATGAGCTGATTTTT
*
7885835 TTGAAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTTGCAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
* *
7885900 GTTGAGTTTTGACAAACAAAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACTTCTCG
66 GTTGATTTTTGACAAACAAAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCG
*
7885965 CAATATGAGTTGATTCTTTT
131 CAATATGAGCTGA-T-TTTT
* * * *
7885985 AGAAACATAAATTAAAAAAACGAAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCT
1 -------T---TGAAAAACA-G-AAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCT
7886050 CTCGCAATATGAGTTGATTT
54 CTCGCAATATGAGTTGATTT
7886070 GAAAAGCAGA
Statistics
Matches: 477, Mismatches: 33, Indels: 27
0.89 0.06 0.05
Matches are distributed among these distances:
146 36 0.08
147 106 0.22
148 169 0.35
149 58 0.12
150 4 0.01
151 37 0.08
157 1 0.00
160 7 0.01
161 1 0.00
162 58 0.12
ACGTcount: A:0.33, C:0.20, G:0.17, T:0.29
Consensus pattern (148 bp):
TTGAAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
GTTGATTTTTGACAAACAAAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCG
CAATATGAGCTGATTTTT
Found at i:7886207 original size:14 final size:13
Alignment explanation
Indices: 7886172--7886216 Score: 72
Period size: 13 Copynumber: 3.4 Consensus size: 13
7886162 TTGATTTTTG
7886172 AAAAACAGAAATT
1 AAAAACAGAAATT
*
7886185 AAAAGCAGAAATT
1 AAAAACAGAAATT
7886198 GAAAAACAGAAATT
1 -AAAAACAGAAATT
7886212 AAAAA
1 AAAAA
7886217 TACCTCGGCG
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
13 17 0.59
14 12 0.41
ACGTcount: A:0.69, C:0.07, G:0.11, T:0.13
Consensus pattern (13 bp):
AAAAACAGAAATT
Found at i:7886237 original size:100 final size:101
Alignment explanation
Indices: 7886000--7886381 Score: 456
Period size: 100 Copynumber: 3.9 Consensus size: 101
7885990 CATAAATTAA
*
7886000 AAAAAC-GAAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGT
1 AAAAACAG-AAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGT
* * * *
7886064 TGA--TTTGAAAAGCAGAATTTGTAAGGCAAAAATTG
65 TGATTTTTGAAAAGCAGAAATTGAAAAGCAGAAATTG
7886099 AAAAACAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
1 AAAAACAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
*
7886164 GATTTTTGAAAAACAGAAATT-AAAAGCAGAAATTG
66 GATTTTTGAAAAGCAGAAATTGAAAAGCAGAAATTG
* * * *
7886199 AAAAACAGAAATTAAAAATACCTCGGCGTGCCCCGAGGCTCAGCTCACCTCTCGCAATATGAGTT
1 AAAAACAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
*
7886264 GATTTTTGAAAAGCATAAATT--------G--A---
66 GATTTTTGAAAAGCAGAAATTGAAAAGCAGAAATTG
* * * *
7886287 AAAAACGGAAATTGAAAATACCTCAGCGTGTGACCTGAGGCCCAATTCACCTCTCGCAATATGAG
1 AAAAACAGAAATTGAAAATACCTCAGC--GTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAG
*
7886352 TTGATTTTTTTGAAAAACAGAAATTGAAAA
64 TTGA--TTTTTGAAAAGCAGAAATTGAAAA
7886382 TACCTCAACG
Statistics
Matches: 249, Mismatches: 22, Indels: 26
0.84 0.07 0.09
Matches are distributed among these distances:
88 24 0.10
90 35 0.14
91 1 0.00
92 17 0.07
93 1 0.00
99 64 0.26
100 92 0.37
101 15 0.06
ACGTcount: A:0.39, C:0.19, G:0.18, T:0.24
Consensus pattern (101 bp):
AAAAACAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
GATTTTTGAAAAGCAGAAATTGAAAAGCAGAAATTG
Found at i:7886354 original size:90 final size:89
Alignment explanation
Indices: 7886185--7886381 Score: 263
Period size: 90 Copynumber: 2.2 Consensus size: 89
7886175 AACAGAAATT
* * *
7886185 AAAAGCAGAAATTG-AAAAACAGAAATTAAAAATACCTCGGCGTGCCCCGAGGCTCAGCTCACCT
1 AAAAGCAGAAATTGAAAAAACAGAAATTAAAAATACCTCGGCGTGACCCGAGGCCCAACTCACCT
7886249 CTCGCAATATGAGTTGA-TTTTTG
66 CTCGCAATATGAGTTGATTTTTTG
* * * * * *
7886272 AAAAGCATAAATTGAAAAAACGGAAATTGAAAATACCTCAGCGTGTGACCTGAGGCCCAATTCAC
1 AAAAGCAGAAATTGAAAAAACAGAAATTAAAAATACCTC-G-GCGTGACCCGAGGCCCAACTCAC
7886337 CTCTCGCAATATGAGTTGATTTTTTTG
64 CTCTCGCAATATGAGTTGA-TTTTTTG
*
7886364 AAAAACAGAAATTGAAAA
1 AAAAGCAGAAATTGAAAA
7886382 TACCTCAACG
Statistics
Matches: 94, Mismatches: 11, Indels: 5
0.85 0.10 0.05
Matches are distributed among these distances:
87 13 0.14
88 22 0.23
89 1 0.01
90 36 0.38
92 22 0.23
ACGTcount: A:0.39, C:0.19, G:0.18, T:0.24
Consensus pattern (89 bp):
AAAAGCAGAAATTGAAAAAACAGAAATTAAAAATACCTCGGCGTGACCCGAGGCCCAACTCACCT
CTCGCAATATGAGTTGATTTTTTG
Found at i:7886467 original size:73 final size:74
Alignment explanation
Indices: 7886295--7886504 Score: 305
Period size: 73 Copynumber: 2.8 Consensus size: 74
7886285 GAAAAAACGG
* * *
7886295 AAATTGAAAATACCTCAGCGTGTGACCTGAGGCCCAATTCACCTCTCGCAATATGAGTTGATTTT
1 AAATTGAAAATACCTCAGCGTGT--CCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TGT
*
7886360 TTTGAAAAACAG
63 TTTGAAAAACAA
* * *
7886372 AAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTTGCAATATGAGTTGA-GTTTT
1 AAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATGTTTT
*
7886436 GACAAACAA
66 GAAAAACAA
*
7886445 AAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
1 AAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
7886505 TTGAAAAGTA
Statistics
Matches: 120, Mismatches: 12, Indels: 5
0.88 0.09 0.04
Matches are distributed among these distances:
73 66 0.55
75 32 0.27
77 22 0.18
ACGTcount: A:0.32, C:0.22, G:0.18, T:0.29
Consensus pattern (74 bp):
AAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATGTTTT
GAAAAACAA
Found at i:7886644 original size:14 final size:13
Alignment explanation
Indices: 7886609--7886653 Score: 72
Period size: 13 Copynumber: 3.4 Consensus size: 13
7886599 TTGATTTTTG
7886609 AAAAACAGAAATT
1 AAAAACAGAAATT
*
7886622 AAAAGCAGAAATT
1 AAAAACAGAAATT
7886635 GAAAAACAGAAATT
1 -AAAAACAGAAATT
7886649 AAAAA
1 AAAAA
7886654 TACCTCGGCG
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
13 17 0.59
14 12 0.41
ACGTcount: A:0.69, C:0.07, G:0.11, T:0.13
Consensus pattern (13 bp):
AAAAACAGAAATT
Found at i:7886674 original size:100 final size:101
Alignment explanation
Indices: 7886434--7886741 Score: 424
Period size: 100 Copynumber: 3.1 Consensus size: 101
7886424 GAGTTGAGTT
* * * *
7886434 TTGACAAACAAAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGA
* * * * *
7886499 GTTGA--TTTGAAAAGTAGAATTTGTAAGGCAAAAA
66 GTTGATTTTTGAAAAGCAGAAATTGAAAAGCAGAAA
*
7886533 TTGAAAAACAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGTAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGA
*
7886598 GTTGATTTTTGAAAAACAGAAATT-AAAAGCAGAAA
66 GTTGATTTTTGAAAAGCAGAAATTGAAAAGCAGAAA
* * * *
7886633 TTGAAAAACAGAAATTAAAAATACCTCGGCGTGCCCCGAGGCTCAGCTCACCTCTCGCAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGA
* * *
7886698 GTTAATTTTTGAAAAGCATAAATTGAAAAAACAGAAA
66 GTTGATTTTTGAAAAGCAGAAATTG-AAAAGCAGAAA
7886735 TTGAAAA
1 TTGAAAA
7886742 TACCTCAGCA
Statistics
Matches: 185, Mismatches: 20, Indels: 5
0.88 0.10 0.02
Matches are distributed among these distances:
99 65 0.35
100 89 0.48
101 14 0.08
102 17 0.09
ACGTcount: A:0.40, C:0.18, G:0.17, T:0.24
Consensus pattern (101 bp):
TTGAAAAACAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGA
GTTGATTTTTGAAAAGCAGAAATTGAAAAGCAGAAA
Found at i:7886787 original size:90 final size:87
Alignment explanation
Indices: 7886622--7886797 Score: 244
Period size: 90 Copynumber: 2.0 Consensus size: 87
7886612 AACAGAAATT
* * * * *
7886622 AAAAGCAGAAATTGAAAAACAGAAATTAAAAATACCTCGGCGTGCCCCGAGGCTCAGCTCACCTC
1 AAAAGCAGAAATTGAAAAACAGAAATTAAAAATACCTCAGCGTGACCCGAGGCCCAACTCACATC
7886687 TCGCAATATGAGTTAATTTTTG
66 TCGCAATATGAGTTAATTTTTG
* * *
7886709 AAAAGCATAAATTGAAAAAACAGAAATTGAAAATACCTCAGCATGTGACCTGAGGCCCAACTCAC
1 AAAAGCAGAAATTG-AAAAACAGAAATTAAAAATACCTCAGC--GTGACCCGAGGCCCAACTCAC
*
7886774 ATCTCGCAATATGAGTTGATTTTT
63 ATCTCGCAATATGAGTTAATTTTT
7886798 TTGAAAGATA
Statistics
Matches: 77, Mismatches: 9, Indels: 3
0.87 0.10 0.03
Matches are distributed among these distances:
87 13 0.17
88 25 0.32
90 39 0.51
ACGTcount: A:0.39, C:0.20, G:0.17, T:0.24
Consensus pattern (87 bp):
AAAAGCAGAAATTGAAAAACAGAAATTAAAAATACCTCAGCGTGACCCGAGGCCCAACTCACATC
TCGCAATATGAGTTAATTTTTG
Found at i:7902588 original size:23 final size:22
Alignment explanation
Indices: 7902562--7902607 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 22
7902552 ATAAATAGTA
7902562 ATAGTGTTAGAAATATACTATAT
1 ATAGTGTTAGAAATATA-TATAT
* *
7902585 ATAGTGTTTGAAGTATATATAT
1 ATAGTGTTAGAAATATATATAT
7902607 A
1 A
7902608 AAATAGTGAA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
22 6 0.29
23 15 0.71
ACGTcount: A:0.41, C:0.02, G:0.15, T:0.41
Consensus pattern (22 bp):
ATAGTGTTAGAAATATATATAT
Found at i:7902613 original size:25 final size:23
Alignment explanation
Indices: 7902561--7902615 Score: 58
Period size: 25 Copynumber: 2.3 Consensus size: 23
7902551 TATAAATAGT
7902561 AATAGTGTTAGAAATATACTATA
1 AATAGTGTTAGAAATATACTATA
* *
7902584 TATAGTGTTTGAAGTATATA-TATAA
1 AATAGTGTTAGAA--ATATACTAT-A
7902609 AATAGTG
1 AATAGTG
7902616 AAAATATAAC
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
23 11 0.42
24 3 0.12
25 12 0.46
ACGTcount: A:0.44, C:0.02, G:0.16, T:0.38
Consensus pattern (23 bp):
AATAGTGTTAGAAATATACTATA
Done.