Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr9
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 91122320
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2661692 characters in sequence are not A, C, G, or T
File 230 of 279
Found at i:75330517 original size:18 final size:18
Alignment explanation
Indices: 75330494--75330536 Score: 86
Period size: 18 Copynumber: 2.4 Consensus size: 18
75330484 GACGATTGTG
75330494 CAATACCCAAATAGAGCT
1 CAATACCCAAATAGAGCT
75330512 CAATACCCAAATAGAGCT
1 CAATACCCAAATAGAGCT
75330530 CAATACC
1 CAATACC
75330537 ATACTCAACT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 25 1.00
ACGTcount: A:0.44, C:0.30, G:0.09, T:0.16
Consensus pattern (18 bp):
CAATACCCAAATAGAGCT
Found at i:75338632 original size:40 final size:40
Alignment explanation
Indices: 75338538--75338682 Score: 175
Period size: 40 Copynumber: 3.6 Consensus size: 40
75338528 TACTCGAATG
*
75338538 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCT-AGTGACT
* * * *
75338579 ACATCCGGACTAAGAT-CCGAAGGCAGTTGTGCTAGCGACT
1 ATATCCGGGCTAAG-TCCCGAAGGCATTTGTGCTAGTGACT
* * *
75338619 ATATCCGGGCTAAGTCCCAAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* *
75338659 ATATCCGGGTTAAGACCCGAAGGC
1 ATATCCGGGCTAAGTCCCGAAGGC
75338683 CTTGTGCGAG
Statistics
Matches: 87, Mismatches: 15, Indels: 5
0.81 0.14 0.05
Matches are distributed among these distances:
39 1 0.01
40 58 0.67
41 27 0.31
42 1 0.01
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
Found at i:75340507 original size:58 final size:58
Alignment explanation
Indices: 75340444--75341315 Score: 1735
Period size: 58 Copynumber: 15.0 Consensus size: 58
75340434 ATTCAACATG
75340444 TTCATTTAAGTGCAATTTTAATTATTTTATAAAAATTAATTATTTTTCGATAAGAATT
1 TTCATTTAAGTGCAATTTTAATTATTTTATAAAAATTAATTATTTTTCGATAAGAATT
75340502 TTCATTTAAGTGCAATTTTAATTATTTTATAAAAATTAATTATTTTTCGATAAGAATT
1 TTCATTTAAGTGCAATTTTAATTATTTTATAAAAATTAATTATTTTTCGATAAGAATT
75340560 TTCATTTAAGTGCAATTTTAATTATTTTATAAAAATTAATTATTTTTCGATAAGAATT
1 TTCATTTAAGTGCAATTTTAATTATTTTATAAAAATTAATTATTTTTCGATAAGAATT
75340618 TTCATTTAAGTGCAATTTTAATTATTTTATAAAAATTAATTATTTTTCGATAAGAATT
1 TTCATTTAAGTGCAATTTTAATTATTTTATAAAAATTAATTATTTTTCGATAAGAATT
75340676 TTCATTTAAGTGCAATTTTAATTATTTTATAAAAATTAATTATTTTTCGATAAGAATT
1 TTCATTTAAGTGCAATTTTAATTATTTTATAAAAATTAATTATTTTTCGATAAGAATT
75340734 TTCATTTAAGTGCAATTTTAATTATTTTATAAAAATTAATTATTTTTCGATAAGAATT
1 TTCATTTAAGTGCAATTTTAATTATTTTATAAAAATTAATTATTTTTCGATAAGAATT
75340792 TTCATTTAAGTGCAATTTTAATTATTTTATAAAAATTAATTATTTTTCGATAAGAATT
1 TTCATTTAAGTGCAATTTTAATTATTTTATAAAAATTAATTATTTTTCGATAAGAATT
75340850 TTCATTTAAGTGCAATTTTAATTATTTTATAAAAATTAATTATTTTTCGATAAGAATT
1 TTCATTTAAGTGCAATTTTAATTATTTTATAAAAATTAATTATTTTTCGATAAGAATT
75340908 TTCATTTAAGTGCAATTTTAATTATTTTATAAAAATTAATTATTTTTCGATAAGAATT
1 TTCATTTAAGTGCAATTTTAATTATTTTATAAAAATTAATTATTTTTCGATAAGAATT
75340966 TTCATTTAAGTGCAATTTTAATTATTTTATAAAAATTAATTATTTTTCGATAAGAATT
1 TTCATTTAAGTGCAATTTTAATTATTTTATAAAAATTAATTATTTTTCGATAAGAATT
75341024 TTCATTTAAGTGCAATTTTAATTATTTTATAAAAATTAATTATTTTTCGATAAGAATT
1 TTCATTTAAGTGCAATTTTAATTATTTTATAAAAATTAATTATTTTTCGATAAGAATT
75341082 TTCATTTAAGTGCAATTTTAATTATTTTATAAAAATTAATTATTTTTCGATAAGAATT
1 TTCATTTAAGTGCAATTTTAATTATTTTATAAAAATTAATTATTTTTCGATAAGAATT
75341140 TTCATTTAAGTGCAATTTTAATTATTTTATAAAAATTAATTATTTTTCGATAAGAATT
1 TTCATTTAAGTGCAATTTTAATTATTTTATAAAAATTAATTATTTTTCGATAAGAATT
75341198 TTCATTTAAGTGCAATTTTAATTATTTTATAAAAATTAATTATTTTTCGATAAGAATT
1 TTCATTTAAGTGCAATTTTAATTATTTTATAAAAATTAATTATTTTTCGATAAGAATT
*
75341256 TTCATTTAAGTGCAATTTTAATTATTTTATAAAAATTAATTATTTTTGGATAAGAATT
1 TTCATTTAAGTGCAATTTTAATTATTTTATAAAAATTAATTATTTTTCGATAAGAATT
75341314 TT
1 TT
75341316 ATCAAAACTA
Statistics
Matches: 813, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
58 813 1.00
ACGTcount: A:0.38, C:0.05, G:0.07, T:0.50
Consensus pattern (58 bp):
TTCATTTAAGTGCAATTTTAATTATTTTATAAAAATTAATTATTTTTCGATAAGAATT
Found at i:75341313 original size:21 final size:18
Alignment explanation
Indices: 75340461--75341301 Score: 100
Period size: 19 Copynumber: 43.6 Consensus size: 18
75340451 AAGTGCAATT
75340461 TTAATTATTTTATAAAAA
1 TTAATTATTTTATAAAAA
*
75340479 TTAATTATTTTTCGATAAGAA
1 TTAATTA-TTTT--ATAAAAA
* * **
75340500 TT--TTCATTTAAGTGCAATT
1 TTAATT-ATTTTA-T-AAAAA
75340519 TTAATTATTTTATAAAAA
1 TTAATTATTTTATAAAAA
*
75340537 TTAATTATTTTTCGATAAGAA
1 TTAATTA-TTTT--ATAAAAA
* * **
75340558 TT--TTCATTTAAGTGCAATT
1 TTAATT-ATTTTA-T-AAAAA
75340577 TTAATTATTTTATAAAAA
1 TTAATTATTTTATAAAAA
*
75340595 TTAATTATTTTTCGATAAGAA
1 TTAATTA-TTTT--ATAAAAA
* * **
75340616 TT--TTCATTTAAGTGCAATT
1 TTAATT-ATTTTA-T-AAAAA
75340635 TTAATTATTTTATAAAAA
1 TTAATTATTTTATAAAAA
*
75340653 TTAATTATTTTTCGATAAGAA
1 TTAATTA-TTTT--ATAAAAA
* * **
75340674 TT--TTCATTTAAGTGCAATT
1 TTAATT-ATTTTA-T-AAAAA
75340693 TTAATTATTTTATAAAAA
1 TTAATTATTTTATAAAAA
*
75340711 TTAATTATTTTTCGATAAGAA
1 TTAATTA-TTTT--ATAAAAA
* * **
75340732 TT--TTCATTTAAGTGCAATT
1 TTAATT-ATTTTA-T-AAAAA
75340751 TTAATTATTTTATAAAAA
1 TTAATTATTTTATAAAAA
*
75340769 TTAATTATTTTTCGATAAGAA
1 TTAATTA-TTTT--ATAAAAA
* * **
75340790 TT--TTCATTTAAGTGCAATT
1 TTAATT-ATTTTA-T-AAAAA
75340809 TTAATTATTTTATAAAAA
1 TTAATTATTTTATAAAAA
*
75340827 TTAATTATTTTTCGATAAGAA
1 TTAATTA-TTTT--ATAAAAA
* * **
75340848 TT--TTCATTTAAGTGCAATT
1 TTAATT-ATTTTA-T-AAAAA
75340867 TTAATTATTTTATAAAAA
1 TTAATTATTTTATAAAAA
*
75340885 TTAATTATTTTTCGATAAGAA
1 TTAATTA-TTTT--ATAAAAA
* * **
75340906 TT--TTCATTTAAGTGCAATT
1 TTAATT-ATTTTA-T-AAAAA
75340925 TTAATTATTTTATAAAAA
1 TTAATTATTTTATAAAAA
*
75340943 TTAATTATTTTTCGATAAGAA
1 TTAATTA-TTTT--ATAAAAA
* * **
75340964 TT--TTCATTTAAGTGCAATT
1 TTAATT-ATTTTA-T-AAAAA
75340983 TTAATTATTTTATAAAAA
1 TTAATTATTTTATAAAAA
*
75341001 TTAATTATTTTTCGATAAGAA
1 TTAATTA-TTTT--ATAAAAA
* * **
75341022 TT--TTCATTTAAGTGCAATT
1 TTAATT-ATTTTA-T-AAAAA
75341041 TTAATTATTTTATAAAAA
1 TTAATTATTTTATAAAAA
*
75341059 TTAATTATTTTTCGATAAGAA
1 TTAATTA-TTTT--ATAAAAA
* * **
75341080 TT--TTCATTTAAGTGCAATT
1 TTAATT-ATTTTA-T-AAAAA
75341099 TTAATTATTTTATAAAAA
1 TTAATTATTTTATAAAAA
*
75341117 TTAATTATTTTTCGATAAGAA
1 TTAATTA-TTTT--ATAAAAA
* * **
75341138 TT--TTCATTTAAGTGCAATT
1 TTAATT-ATTTTA-T-AAAAA
75341157 TTAATTATTTTATAAAAA
1 TTAATTATTTTATAAAAA
*
75341175 TTAATTATTTTTCGATAAGAA
1 TTAATTA-TTTT--ATAAAAA
* * **
75341196 TT--TTCATTTAAGTGCAATT
1 TTAATT-ATTTTA-T-AAAAA
75341215 TTAATTATTTTATAAAAA
1 TTAATTATTTTATAAAAA
*
75341233 TTAATTATTTTTCGATAAGAA
1 TTAATTA-TTTT--ATAAAAA
* * **
75341254 TT--TTCATTTAAGTGCAATT
1 TTAATT-ATTTTA-T-AAAAA
75341273 TTAATTATTTTATAAAAA
1 TTAATTATTTTATAAAAA
75341291 TTAATTATTTT
1 TTAATTATTTT
75341302 TGGATAAGAA
Statistics
Matches: 571, Mismatches: 140, Indels: 224
0.61 0.15 0.24
Matches are distributed among these distances:
17 14 0.02
18 151 0.26
19 182 0.32
20 84 0.15
21 140 0.25
ACGTcount: A:0.38, C:0.05, G:0.07, T:0.50
Consensus pattern (18 bp):
TTAATTATTTTATAAAAA
Found at i:75342536 original size:28 final size:28
Alignment explanation
Indices: 75342504--75342559 Score: 94
Period size: 28 Copynumber: 2.0 Consensus size: 28
75342494 TATTCTGAGT
* *
75342504 AGAAATAATTTCAATTTTTCGGTCCCAC
1 AGAAATAATTTCAAGTTTTCAGTCCCAC
75342532 AGAAATAATTTCAAGTTTTCAGTCCCAC
1 AGAAATAATTTCAAGTTTTCAGTCCCAC
75342560 TATTTAAAAT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
28 26 1.00
ACGTcount: A:0.34, C:0.21, G:0.11, T:0.34
Consensus pattern (28 bp):
AGAAATAATTTCAAGTTTTCAGTCCCAC
Found at i:75343967 original size:25 final size:25
Alignment explanation
Indices: 75343911--75343967 Score: 62
Period size: 25 Copynumber: 2.2 Consensus size: 25
75343901 ATTTAGTTAA
*
75343911 TAAAAATTATTAATAATTCAATGAAT
1 TAAAAATTA-TAATAATTCAATAAAT
*
75343937 TGAAAAATTA-AATAATTGAATAAAAT
1 T-AAAAATTATAATAATTCAAT-AAAT
75343963 TAAAA
1 TAAAA
75343968 TTTAGGAGAA
Statistics
Matches: 27, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
25 14 0.52
26 5 0.19
27 8 0.30
ACGTcount: A:0.60, C:0.02, G:0.05, T:0.33
Consensus pattern (25 bp):
TAAAAATTATAATAATTCAATAAAT
Found at i:75344725 original size:22 final size:20
Alignment explanation
Indices: 75344686--75344732 Score: 60
Period size: 22 Copynumber: 2.2 Consensus size: 20
75344676 TGTAAAGTTG
75344686 ATAATAATTAATATATATT-
1 ATAATAATTAATATATATTA
75344705 ATAATAGATATAATTATATATTA
1 ATAATA-AT-TAA-TATATATTA
75344728 ATAAT
1 ATAAT
75344733 TATCATCTTT
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
19 6 0.25
20 2 0.08
21 3 0.12
22 8 0.33
23 5 0.21
ACGTcount: A:0.53, C:0.00, G:0.02, T:0.45
Consensus pattern (20 bp):
ATAATAATTAATATATATTA
Found at i:75347408 original size:37 final size:37
Alignment explanation
Indices: 75347344--75347419 Score: 95
Period size: 37 Copynumber: 2.1 Consensus size: 37
75347334 TTACAAGCCA
75347344 AAATCATTATAAGCCACATCTCATGGCTACAT-ACAAC
1 AAATCATTATAAGCCACATCTCATGGCTA-ATCACAAC
*
75347381 AAATCATTATAAGCCA-ATACAT-TTGGCTAATCACAAC
1 AAATCATTATAAGCCACAT-C-TCATGGCTAATCACAAC
75347418 AA
1 AA
75347420 CATCTATCAT
Statistics
Matches: 35, Mismatches: 1, Indels: 6
0.83 0.02 0.14
Matches are distributed among these distances:
36 4 0.11
37 30 0.86
38 1 0.03
ACGTcount: A:0.43, C:0.24, G:0.08, T:0.25
Consensus pattern (37 bp):
AAATCATTATAAGCCACATCTCATGGCTAATCACAAC
Found at i:75365413 original size:27 final size:27
Alignment explanation
Indices: 75365376--75365487 Score: 108
Period size: 27 Copynumber: 4.1 Consensus size: 27
75365366 ACATGGCTGG
75365376 CAGA-ACAGATATTGTGACAGAGTCAC
1 CAGATACAGATATTGTGACAGAGTCAC
75365402 CAGATACAGATATTGT-AGCAGAGTCAC
1 CAGATACAGATATTGTGA-CAGAGTCAC
* *
75365429 CAGAAACAGATATT-TCCGGCAGAG-CTAC
1 CAGATACAGATATTGT--GACAGAGTC-AC
* *
75365457 CAGAT-CAGATATTTGTGGCAGAGCCAC
1 CAGATACAGATA-TTGTGACAGAGTCAC
75365484 CAGA
1 CAGA
75365488 ACGCTTCCTC
Statistics
Matches: 74, Mismatches: 3, Indels: 17
0.79 0.03 0.18
Matches are distributed among these distances:
26 6 0.08
27 53 0.72
28 14 0.19
29 1 0.01
ACGTcount: A:0.36, C:0.21, G:0.23, T:0.20
Consensus pattern (27 bp):
CAGATACAGATATTGTGACAGAGTCAC
Found at i:75369442 original size:40 final size:40
Alignment explanation
Indices: 75369393--75369510 Score: 182
Period size: 40 Copynumber: 3.0 Consensus size: 40
75369383 CGGAAGTAAC
* *
75369393 AACCAGCACAAATGCCTTCGGGACTTAACCCGGTTATAAT
1 AACCCGCACAAATGCCTTCGGGACCTAACCCGGTTATAAT
*
75369433 AACCCGCACAAATGCCTTCGGGACCTAACCCGATTATAAT
1 AACCCGCACAAATGCCTTCGGGACCTAACCCGGTTATAAT
* * *
75369473 AACCCGCACAAATGCCTTAGAGACGTAACCCGGTTATA
1 AACCCGCACAAATGCCTTCGGGACCTAACCCGGTTATA
75369511 TTTTTTTTCA
Statistics
Matches: 71, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
40 71 1.00
ACGTcount: A:0.33, C:0.30, G:0.17, T:0.20
Consensus pattern (40 bp):
AACCCGCACAAATGCCTTCGGGACCTAACCCGGTTATAAT
Found at i:75377332 original size:40 final size:40
Alignment explanation
Indices: 75377278--75378235 Score: 1844
Period size: 40 Copynumber: 23.9 Consensus size: 40
75377268 CGGATGTAAC
* * *
75377278 AACCAGCACAAATGCCTTCGGGACTTAACCCGGTTATAAT
1 AACCCGCACGAATGCCTTCCGGACTTAACCCGGTTATAAT
* *
75377318 AATCCGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
1 AACCCGCACGAATGCCTTCCGGACTTAACCCGGTTATAAT
75377358 AACCCGCACGAATGCCTTCCGGACTTAACCCGGTTATAAT
1 AACCCGCACGAATGCCTTCCGGACTTAACCCGGTTATAAT
75377398 AACCCGCACGAATGCCTTCCGGACTTAACCCGGTTATAAT
1 AACCCGCACGAATGCCTTCCGGACTTAACCCGGTTATAAT
75377438 AACCCGCACGAATGCCTTCCGGACTTAACCCGGTTATAAT
1 AACCCGCACGAATGCCTTCCGGACTTAACCCGGTTATAAT
75377478 AACCCGCACGAATGCCTTCCGGACTTAACCCGGTTATAAT
1 AACCCGCACGAATGCCTTCCGGACTTAACCCGGTTATAAT
75377518 AACCCGCACGAATGCCTTCCGGACTTAACCCGGTTATAAT
1 AACCCGCACGAATGCCTTCCGGACTTAACCCGGTTATAAT
75377558 AACCCGCACGAATGCCTTCCGGACTTAACCCGGTTATAAT
1 AACCCGCACGAATGCCTTCCGGACTTAACCCGGTTATAAT
75377598 AACCCGCACGAATGCCTTCCGGACTTAACCCGGTTATAAT
1 AACCCGCACGAATGCCTTCCGGACTTAACCCGGTTATAAT
75377638 AACCCGCACGAATGCCTTCCGGACTTAACCCGGTTATAAT
1 AACCCGCACGAATGCCTTCCGGACTTAACCCGGTTATAAT
75377678 AACCCGCACGAATGCCTTCCGGACTTAACCCGGTTATAAT
1 AACCCGCACGAATGCCTTCCGGACTTAACCCGGTTATAAT
75377718 AACCCGCACGAATGCCTTCCGGACTTAACCCGGTTATAAT
1 AACCCGCACGAATGCCTTCCGGACTTAACCCGGTTATAAT
75377758 AACCCGCACGAATGCCTTCCGGACTTAACCCGGTTATAAT
1 AACCCGCACGAATGCCTTCCGGACTTAACCCGGTTATAAT
75377798 AACCCGCACGAATGCCTTCCGGACTTAACCCGGTTATAAT
1 AACCCGCACGAATGCCTTCCGGACTTAACCCGGTTATAAT
75377838 AACCCGCACGAATGCCTTCCGGACTTAACCCGGTTATAAT
1 AACCCGCACGAATGCCTTCCGGACTTAACCCGGTTATAAT
75377878 AACCCGCACGAATGCCTTCCGGACTTAACCCGGTTATAAT
1 AACCCGCACGAATGCCTTCCGGACTTAACCCGGTTATAAT
75377918 AACCCGCACGAATGCCTTCCGGACTTAACCCGGTTATAAT
1 AACCCGCACGAATGCCTTCCGGACTTAACCCGGTTATAAT
75377958 AACCCGCACGAATGCCTTCCGGACTTAACCCGGTTATAAT
1 AACCCGCACGAATGCCTTCCGGACTTAACCCGGTTATAAT
75377998 AACCCGCACGAATGCCTTCCGGACTTAACCCGGTTATAAT
1 AACCCGCACGAATGCCTTCCGGACTTAACCCGGTTATAAT
75378038 AACCCGCACGAATGCCTTCCGGACTTAACCCGGTTATAAT
1 AACCCGCACGAATGCCTTCCGGACTTAACCCGGTTATAAT
75378078 AACCCGCACGAATGCCTTCCGGACTTAACCCGGTTATAAT
1 AACCCGCACGAATGCCTTCCGGACTTAACCCGGTTATAAT
75378118 AACCCGCACGAATGCCTTCCGGACTTAACCCGGTTATAAT
1 AACCCGCACGAATGCCTTCCGGACTTAACCCGGTTATAAT
*
75378158 AACCCGCACGAATGCCTTTCGGACTTAACCCGGTTATAAT
1 AACCCGCACGAATGCCTTCCGGACTTAACCCGGTTATAAT
* *
75378198 AACCCGCACAAATGCCTTCGGGACTTAACCCGGTTATA
1 AACCCGCACGAATGCCTTCCGGACTTAACCCGGTTATA
75378236 TTTTTTTTTC
Statistics
Matches: 909, Mismatches: 9, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
40 909 1.00
ACGTcount: A:0.28, C:0.32, G:0.18, T:0.23
Consensus pattern (40 bp):
AACCCGCACGAATGCCTTCCGGACTTAACCCGGTTATAAT
Found at i:75381046 original size:28 final size:27
Alignment explanation
Indices: 75380967--75381046 Score: 106
Period size: 27 Copynumber: 2.9 Consensus size: 27
75380957 CTGCCAGAAT
* *
75380967 AGATATTGTGACAGAGTCACCAGATAC
1 AGATATTGTGGCAGAGTCACCAGAAAC
* *
75380994 AGATATTGTAGCAGAGTCACTAGAAAC
1 AGATATTGTGGCAGAGTCACCAGAAAC
*
75381021 AGATATTTGTGGCAGAGCCACCAGAA
1 AGATA-TTGTGGCAGAGTCACCAGAA
75381047 CGCTTCCTCC
Statistics
Matches: 45, Mismatches: 7, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
27 28 0.62
28 17 0.38
ACGTcount: A:0.38, C:0.17, G:0.24, T:0.21
Consensus pattern (27 bp):
AGATATTGTGGCAGAGTCACCAGAAAC
Found at i:75395923 original size:27 final size:27
Alignment explanation
Indices: 75395902--75395969 Score: 91
Period size: 27 Copynumber: 2.5 Consensus size: 27
75395892 AATGCCTTTG
75395902 TAGGGTAAAATGACCGTAATGCCCCTA
1 TAGGGTAAAATGACCGTAATGCCCCTA
* * * *
75395929 TAGGGTAAAATGATCGTAATACACCTG
1 TAGGGTAAAATGACCGTAATGCCCCTA
*
75395956 TATGGTAAAATGAC
1 TAGGGTAAAATGAC
75395970 GATTATTCCC
Statistics
Matches: 35, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 35 1.00
ACGTcount: A:0.37, C:0.16, G:0.22, T:0.25
Consensus pattern (27 bp):
TAGGGTAAAATGACCGTAATGCCCCTA
Found at i:75400418 original size:53 final size:54
Alignment explanation
Indices: 75400355--75400543 Score: 182
Period size: 55 Copynumber: 3.5 Consensus size: 54
75400345 ATTGCTATGT
* * *
75400355 CTTGACATGGTCTTACGTGGTATCCTTGCCTTAT-GAACTCACCATTGCCATGC
1 CTTGACATGGTCTTACATGGTATCCTTGCCTTATAGAACTTACCAATGCCATGC
* * ** * ** * *
75400408 CTTGGCATGGTCTTACATGGGATTTTTGCCTTATCGTAGTTTATCAATGCCATGT
1 CTTGACATGGTCTTACATGGTATCCTTGCCTTATAG-AACTTACCAATGCCATGC
* * * *
75400463 CTTGACATGGTCTTACATGATTTCCTTGCCTTGTAAAACTTACCAATGCCATGC
1 CTTGACATGGTCTTACATGGTATCCTTGCCTTATAGAACTTACCAATGCCATGC
* * * *
75400517 CTTGGCATTGTCTGACTTGGTATCCTT
1 CTTGACATGGTCTTACATGGTATCCTT
75400544 AAACCCTAAT
Statistics
Matches: 104, Mismatches: 30, Indels: 3
0.76 0.22 0.02
Matches are distributed among these distances:
53 29 0.28
54 36 0.35
55 39 0.38
ACGTcount: A:0.19, C:0.24, G:0.19, T:0.38
Consensus pattern (54 bp):
CTTGACATGGTCTTACATGGTATCCTTGCCTTATAGAACTTACCAATGCCATGC
Found at i:75406572 original size:55 final size:52
Alignment explanation
Indices: 75406425--75406610 Score: 151
Period size: 55 Copynumber: 3.5 Consensus size: 52
75406415 AACTTACGAT
* * * * *
75406425 TGCCATGTCTTGACTTGGTCTTACGTGGTATCCTTGCCTTATGAACTCACCAT
1 TGCCATGTCTTGGCATGGTCTTACATGAT-TCCTTGCCTTATGAACTCACCAA
* ** * *
75406478 TGCCATGCCTTGGCATGGTCTTACATAGGA-T-CTTGGCCTTATCGTAGTTTATCAA
1 TGCCATGTCTTGGCATGGTCTTACAT--GATTCCTT-GCCTTAT-G-AACTCACCAA
* * *
75406533 TGCCATGTCTTGGCATGGTCTTACATGATTTCCTTGCCTTGTAAAACTTACCAA
1 TGCCATGTCTTGGCATGGTCTTACATGA-TTCCTTGCCTTAT-GAACTCACCAA
* *
75406587 TGCTATGCCTTGGCATGGTCTTAC
1 TGCCATGTCTTGGCATGGTCTTAC
75406611 TTGGTATCCT
Statistics
Matches: 106, Mismatches: 19, Indels: 15
0.76 0.14 0.11
Matches are distributed among these distances:
52 3 0.03
53 32 0.30
54 30 0.28
55 38 0.36
56 3 0.03
ACGTcount: A:0.19, C:0.24, G:0.20, T:0.37
Consensus pattern (52 bp):
TGCCATGTCTTGGCATGGTCTTACATGATTCCTTGCCTTATGAACTCACCAA
Found at i:75406621 original size:54 final size:53
Alignment explanation
Indices: 75406413--75406621 Score: 179
Period size: 54 Copynumber: 3.9 Consensus size: 53
75406403 ACCTTTTTTT
* * * * * *
75406413 TAAACTTACGATTGCCATGTCTTGACTTGGTCTTACGTGGTATCCTTGCCTTA
1 TAAACTTACCAATGCCATGCCTTGGCATGGTCTTACTTGGTATCCTTGCCTTA
* * * *
75406466 TGAACTCACCATTGCCATGCCTTGGCATGGTCTTACATAGG-AT-CTTGGCCTTA
1 TAAACTTACCAATGCCATGCCTTGGCATGGTCTTAC-TTGGTATCCTT-GCCTTA
* ** * * * * * *
75406519 TCGTAGTTTATCAATGCCATGTCTTGGCATGGTCTTACATGATTTCCTTGCCTTG
1 T--AAACTTACCAATGCCATGCCTTGGCATGGTCTTACTTGGTATCCTTGCCTTA
*
75406574 TAAAACTTACCAATGCTATGCCTTGGCATGGTCTTACTTGGTATCCTT
1 T-AAACTTACCAATGCCATGCCTTGGCATGGTCTTACTTGGTATCCTT
75406622 AAACCCTAAT
Statistics
Matches: 120, Mismatches: 30, Indels: 11
0.75 0.19 0.07
Matches are distributed among these distances:
52 3 0.03
53 39 0.32
54 40 0.33
55 35 0.29
56 3 0.03
ACGTcount: A:0.20, C:0.23, G:0.19, T:0.38
Consensus pattern (53 bp):
TAAACTTACCAATGCCATGCCTTGGCATGGTCTTACTTGGTATCCTTGCCTTA
Found at i:75422021 original size:43 final size:43
Alignment explanation
Indices: 75421863--75422024 Score: 129
Period size: 42 Copynumber: 3.8 Consensus size: 43
75421853 ATAGGATTCT
*
75421863 GATATGTGA-TTCATGTAAAACCACGTCTGGGAC-GTTGGTATC
1 GATATGTGAGTTCATGTAAGACCACGTCTGGGACAG-TGGTATC
* * * * * * *
75421905 AATTTGTGA-TTTATGTGTAAGACGATGTCTGGGACATTGGCATC
1 GATATGTGAGTTCA--TGTAAGACCACGTCTGGGACAGTGGTATC
** *
75421949 G-TAAATGAGTTCGTGTAAGACC-CTGTCTGGGACAGTGGTATC
1 GATATGTGAGTTCATGTAAGACCAC-GTCTGGGACAGTGGTATC
*
75421991 GATATGTGA-TTACATGTAAGACCACATCTGGGAC
1 GATATGTGAGTT-CATGTAAGACCACGTCTGGGAC
75422025 GTTGGCATTG
Statistics
Matches: 90, Mismatches: 22, Indels: 15
0.71 0.17 0.12
Matches are distributed among these distances:
42 37 0.41
43 27 0.30
44 26 0.29
ACGTcount: A:0.27, C:0.15, G:0.27, T:0.31
Consensus pattern (43 bp):
GATATGTGAGTTCATGTAAGACCACGTCTGGGACAGTGGTATC
Found at i:75424344 original size:39 final size:40
Alignment explanation
Indices: 75424299--75424483 Score: 187
Period size: 40 Copynumber: 4.7 Consensus size: 40
75424289 GCTCCTCGTT
* * * *
75424299 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
**
75424339 C-AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* *
75424378 CGAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* ** * * * *
75424418 CAAAGGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCA
*
75424459 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
75424484 CAGCATTCAA
Statistics
Matches: 122, Mismatches: 19, Indels: 8
0.82 0.13 0.05
Matches are distributed among these distances:
39 36 0.30
40 75 0.61
41 11 0.09
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:75424492 original size:41 final size:41
Alignment explanation
Indices: 75424415--75424492 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
75424405 TTAGTATCTC
* * *
75424415 GCACAAAGGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAAGGCCTTCGGATCTTAGCCCGGACACATTCACTTA
75424456 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAAGGCCTTC-GGATCTTAGCCCGGACA-CATTCA
75424493 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.23
Consensus pattern (41 bp):
GCACAAAGGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:75431821 original size:40 final size:40
Alignment explanation
Indices: 75431518--75431807 Score: 465
Period size: 40 Copynumber: 7.3 Consensus size: 40
75431508 TCCTCGTTCA
* * * ** *
75431518 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
*
75431557 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
75431597 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
75431637 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
75431677 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
75431717 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
** * *
75431757 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
*
75431797 AAGGCCTTCGG
1 AATGCCTTCGG
75431808 ATCTTAGTCC
Statistics
Matches: 239, Mismatches: 11, Indels: 1
0.95 0.04 0.00
Matches are distributed among these distances:
39 34 0.14
40 205 0.86
ACGTcount: A:0.27, C:0.29, G:0.21, T:0.23
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
Found at i:75431844 original size:120 final size:120
Alignment explanation
Indices: 75431518--75431860 Score: 424
Period size: 120 Copynumber: 2.9 Consensus size: 120
75431508 TCCTCGTTCA
* * * ** * * *
75431518 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-AATGCCTTCGGGACATAACCCGGAT
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACAAAGGCCTTCGGGACTTAACCCGGAT
* * *
75431582 TTAACAACTCGCACGAATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
66 ATAACAACTAGCACGAAAGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
* *
75431637 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACGAATGCCTTCGGGACTTAACCCGGAT
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACAAAGGCCTTCGGGACTTAACCCGGAT
* * *
75431702 TTAACAACTCGCACGAATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
66 ATAACAACTAGCACGAAAGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
** * **
75431757 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACAAAGGCCTTC-GGATCTTAGTCCGGA
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACAAAGGCCTTCGGGA-CTTAACCCGGA
* *
75431821 TATATTC-ACTTAGCAC-AAAGCCTTCGGGACTTAGCCCGGA
65 TATA-ACAAC-TAGCACGAAAGCCTTCGGGACTTAACCCGGA
75431861 CAGCATTCAA
Statistics
Matches: 201, Mismatches: 19, Indels: 7
0.89 0.08 0.03
Matches are distributed among these distances:
119 36 0.18
120 159 0.79
121 6 0.03
ACGTcount: A:0.27, C:0.29, G:0.21, T:0.24
Consensus pattern (120 bp):
AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACAAAGGCCTTCGGGACTTAACCCGGAT
ATAACAACTAGCACGAAAGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
Found at i:75431869 original size:41 final size:41
Alignment explanation
Indices: 75431792--75431869 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
75431782 TTAGTATCTC
* * *
75431792 GCACAAAGGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAAGGCCTTCGGATCTTAGCCCGGACACATTCACTTA
75431833 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAAGGCCTTC-GGATCTTAGCCCGGACA-CATTCA
75431870 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.23
Consensus pattern (41 bp):
GCACAAAGGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:75433442 original size:49 final size:48
Alignment explanation
Indices: 75433378--75433595 Score: 169
Period size: 48 Copynumber: 4.5 Consensus size: 48
75433368 GGGTGTCACA
* * *
75433378 ATGTCCTAGACAGGTCTTACACTGGCTCTCATCTATCGGTGTCGATGCC
1 ATGTCCCAGACAGGTCTTACACTAGCTCTCATCT-TCGATGTCGATGCC
* * * *
75433427 ATGTCCCAGATAGGTCTTACACTAGCT-TGCATATCTCGAAGTTGATG-C
1 ATGTCCCAGACAGGTCTTACACTAGCTCT-CATCT-TCGATGTCGATGCC
* * * ** **
75433475 ATGTCCCAGACATGTCTTACAATAGCTCTC-GCTTTAATACCGATGCC
1 ATGTCCCAGACAGGTCTTACACTAGCTCTCATCTTCGATGTCGATGCC
* * * *
75433522 ATGTCCCAGACGTGGTCTTACACTGGCTCTCATATT--ATGGCCGATG-C
1 ATGTCCCAGAC-AGGTCTTACACTAGCTCTCATCTTCGAT-GTCGATGCC
*
75433569 ATGTCCCCAGACATGTCTTACACTAGC
1 ATGT-CCCAGACAGGTCTTACACTAGC
75433596 ACACATCCAT
Statistics
Matches: 133, Mismatches: 29, Indels: 16
0.75 0.16 0.09
Matches are distributed among these distances:
46 6 0.05
47 32 0.24
48 55 0.41
49 40 0.30
ACGTcount: A:0.22, C:0.28, G:0.20, T:0.30
Consensus pattern (48 bp):
ATGTCCCAGACAGGTCTTACACTAGCTCTCATCTTCGATGTCGATGCC
Found at i:75433572 original size:47 final size:46
Alignment explanation
Indices: 75433470--75433595 Score: 148
Period size: 47 Copynumber: 2.7 Consensus size: 46
75433460 TCTCGAAGTT
* *
75433470 GATGCATGTCCCAGACATGTCTTACAATAGCTCTCGCTTTAATACC
1 GATGCATGTCCCAGACATGTCTTACACTAGCTCTCGATTTAATACC
* * *
75433516 GATGCCATGTCCCAGACGTGGTCTTACACTGGCTCTC-ATATT-ATGGCC
1 GATG-CATGTCCCAGACAT-GTCTTACACTAGCTCTCGAT-TTAAT-ACC
75433564 GATGCATGTCCCCAGACATGTCTTACACTAGC
1 GATGCATGT-CCCAGACATGTCTTACACTAGC
75433596 ACACATCCAT
Statistics
Matches: 68, Mismatches: 7, Indels: 9
0.81 0.08 0.11
Matches are distributed among these distances:
46 4 0.06
47 33 0.49
48 31 0.46
ACGTcount: A:0.23, C:0.29, G:0.19, T:0.29
Consensus pattern (46 bp):
GATGCATGTCCCAGACATGTCTTACACTAGCTCTCGATTTAATACC
Found at i:75442946 original size:45 final size:48
Alignment explanation
Indices: 75442884--75443003 Score: 142
Period size: 45 Copynumber: 2.6 Consensus size: 48
75442874 TAGTCGACGT
* *
75442884 ATGTCCCAGACATGTCTTACACTAGCTTACTC-T-TGAA-GCCGATG-C
1 ATGTCCCAGACACGTCTTACACTAGC-TACTCGTCTCAATGCCGATGCC
*
75442929 ATGTCCCAGGCACGTCTTACACTAGC-ACTCGTCTCAATGCCGATGCC
1 ATGTCCCAGACACGTCTTACACTAGCTACTCGTCTCAATGCCGATGCC
* *
75442976 ATGTCCTAGACATGGTCTTACACTAGCT
1 ATGTCCCAGACA-CGTCTTACACTAGCT
75443004 CACAAAAATG
Statistics
Matches: 63, Mismatches: 6, Indels: 8
0.82 0.08 0.10
Matches are distributed among these distances:
43 4 0.06
44 1 0.02
45 27 0.43
46 7 0.11
47 11 0.17
48 13 0.21
ACGTcount: A:0.23, C:0.31, G:0.18, T:0.28
Consensus pattern (48 bp):
ATGTCCCAGACACGTCTTACACTAGCTACTCGTCTCAATGCCGATGCC
Found at i:75454716 original size:21 final size:21
Alignment explanation
Indices: 75454662--75454704 Score: 86
Period size: 21 Copynumber: 2.0 Consensus size: 21
75454652 ATGGCACCAA
75454662 CAGAGTTGAAAGAATTAAAGT
1 CAGAGTTGAAAGAATTAAAGT
75454683 CAGAGTTGAAAGAATTAAAGT
1 CAGAGTTGAAAGAATTAAAGT
75454704 C
1 C
75454705 GCAGTTGCAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.47, C:0.07, G:0.23, T:0.23
Consensus pattern (21 bp):
CAGAGTTGAAAGAATTAAAGT
Found at i:75459509 original size:18 final size:17
Alignment explanation
Indices: 75459486--75459589 Score: 52
Period size: 18 Copynumber: 5.8 Consensus size: 17
75459476 AACAAGTGAG
75459486 GAAAAAGAAAAAGAGAAT
1 GAAAAAGAAAAAGA-AAT
*
75459504 GAAAAAGAGCAAAAAGAGATT
1 G-AAAA-AG-AAAAAGA-AAT
* **
75459525 GAGAGTGAAAAAGAAATT
1 GAAAAAGAAAAAGAAA-T
*
75459543 GAAGAAAG-AAGAGAAAAT
1 GAA-AAAGAAAAAG-AAAT
**
75459561 GAATTAGAAAAAGAAAT
1 GAAAAAGAAAAAGAAAT
75459578 --AAAAGAAAAAGA
1 GAAAAAGAAAAAGA
75459590 CGTGGAAAAG
Statistics
Matches: 65, Mismatches: 14, Indels: 17
0.68 0.15 0.18
Matches are distributed among these distances:
15 10 0.15
17 7 0.11
18 23 0.35
19 10 0.15
20 4 0.06
21 11 0.17
ACGTcount: A:0.66, C:0.01, G:0.23, T:0.10
Consensus pattern (17 bp):
GAAAAAGAAAAAGAAAT
Found at i:75460025 original size:112 final size:112
Alignment explanation
Indices: 75459886--75460109 Score: 421
Period size: 112 Copynumber: 2.0 Consensus size: 112
75459876 ATTAATTGTT
*
75459886 ACTCTTCGATTGTGGTTGATAAAGTCATTACGAAAAGAAGTGTGATTTGTTATTCTCTTGATTTA
1 ACTCTTCGATTGTGGTTGATAAAGTCATTACGAAAAGAAGCGTGATTTGTTATTCTCTTGATTTA
75459951 CCCTGTGTAAAATCCTCGAATTTGTCCAAATCTATTTTGGAGAATAA
66 CCCTGTGTAAAATCCTCGAATTTGTCCAAATCTATTTTGGAGAATAA
75459998 ACTCTTCGATTGTGGTTGATAAAGTCATTACGAAAAGAAGCGTGATTTGTTATTCTCTTGATTTA
1 ACTCTTCGATTGTGGTTGATAAAGTCATTACGAAAAGAAGCGTGATTTGTTATTCTCTTGATTTA
* *
75460063 CCTTGTGTAAAATCCTCGAATTTGTCCAAATCTGTTTTGGAGAATAA
66 CCCTGTGTAAAATCCTCGAATTTGTCCAAATCTATTTTGGAGAATAA
75460110 GGTAACGAAA
Statistics
Matches: 109, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
112 109 1.00
ACGTcount: A:0.29, C:0.14, G:0.18, T:0.38
Consensus pattern (112 bp):
ACTCTTCGATTGTGGTTGATAAAGTCATTACGAAAAGAAGCGTGATTTGTTATTCTCTTGATTTA
CCCTGTGTAAAATCCTCGAATTTGTCCAAATCTATTTTGGAGAATAA
Found at i:75462479 original size:18 final size:19
Alignment explanation
Indices: 75462456--75462494 Score: 53
Period size: 18 Copynumber: 2.1 Consensus size: 19
75462446 TTTATCTCAA
*
75462456 TTTCTTTTTC-CACTCTTT
1 TTTCTTGTTCACACTCTTT
*
75462474 TTTCTTGTTCACATTCTTT
1 TTTCTTGTTCACACTCTTT
75462493 TT
1 TT
75462495 CTCTCTCAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
18 9 0.50
19 9 0.50
ACGTcount: A:0.08, C:0.23, G:0.03, T:0.67
Consensus pattern (19 bp):
TTTCTTGTTCACACTCTTT
Found at i:75462510 original size:48 final size:49
Alignment explanation
Indices: 75462458--75462561 Score: 115
Period size: 48 Copynumber: 2.2 Consensus size: 49
75462448 TATCTCAATT
* * *
75462458 TCTTTTTCCACTCT-TTTTTC-TTGTTCACATTCTTTTTCTCTCTCAAAC
1 TCTTTTTCCACTCTCTTTTTCAAT-CTCACATTCTTTTTCACTCTCAAAC
* ** *
75462506 TCTTTTT-CATTCTCTTTTTCAATCTCATTTTCTTTTTCACTCTCAATC
1 TCTTTTTCCACTCTCTTTTTCAATCTCACATTCTTTTTCACTCTCAAAC
75462554 TCTTTTTC
1 TCTTTTTC
75462562 TTTTTCTTTC
Statistics
Matches: 46, Mismatches: 7, Indels: 5
0.79 0.12 0.09
Matches are distributed among these distances:
47 5 0.11
48 40 0.87
49 1 0.02
ACGTcount: A:0.12, C:0.28, G:0.01, T:0.59
Consensus pattern (49 bp):
TCTTTTTCCACTCTCTTTTTCAATCTCACATTCTTTTTCACTCTCAAAC
Found at i:75462533 original size:18 final size:18
Alignment explanation
Indices: 75462512--75462561 Score: 73
Period size: 18 Copynumber: 2.8 Consensus size: 18
75462502 AAACTCTTTT
75462512 TCATTCTCTTTTTCAATC
1 TCATTCTCTTTTTCAATC
* *
75462530 TCATTTTCTTTTTCACTC
1 TCATTCTCTTTTTCAATC
*
75462548 TCAATCTCTTTTTC
1 TCATTCTCTTTTTC
75462562 TTTTTCTTTC
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 28 1.00
ACGTcount: A:0.14, C:0.28, G:0.00, T:0.58
Consensus pattern (18 bp):
TCATTCTCTTTTTCAATC
Found at i:75462551 original size:24 final size:24
Alignment explanation
Indices: 75462487--75462568 Score: 101
Period size: 24 Copynumber: 3.4 Consensus size: 24
75462477 CTTGTTCACA
*
75462487 TTCTTTTTCTCTCTCAAACTCTTT
1 TTCTTTTTCTCTCTCAATCTCTTT
* * * * *
75462511 TTCATTCTCTTTTTCAATCTCATT
1 TTCTTTTTCTCTCTCAATCTCTTT
*
75462535 TTCTTTTTCACTCTCAATCTCTTT
1 TTCTTTTTCTCTCTCAATCTCTTT
75462559 TTCTTTTTCT
1 TTCTTTTTCT
75462569 TTCATTTCTT
Statistics
Matches: 45, Mismatches: 13, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
24 45 1.00
ACGTcount: A:0.12, C:0.27, G:0.00, T:0.61
Consensus pattern (24 bp):
TTCTTTTTCTCTCTCAATCTCTTT
Found at i:75466005 original size:10 final size:10
Alignment explanation
Indices: 75465990--75466027 Score: 51
Period size: 10 Copynumber: 3.8 Consensus size: 10
75465980 GCTCGTTTCC
*
75465990 AGCTCACTCG
1 AGCTCAATCG
75466000 AGCTCAAGTC-
1 AGCTCAA-TCG
75466010 AGCTCAATCG
1 AGCTCAATCG
75466020 AGCTCAAT
1 AGCTCAAT
75466028 TTAGCTTCTT
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
9 2 0.08
10 21 0.84
11 2 0.08
ACGTcount: A:0.29, C:0.32, G:0.18, T:0.21
Consensus pattern (10 bp):
AGCTCAATCG
Found at i:75466033 original size:20 final size:20
Alignment explanation
Indices: 75465989--75466026 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
75465979 AGCTCGTTTC
*
75465989 CAGCTCACTCGAGCTCAAGT
1 CAGCTCAATCGAGCTCAAGT
75466009 CAGCTCAATCGAGCTCAA
1 CAGCTCAATCGAGCTCAA
75466027 TTTAGCTTCT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.29, C:0.34, G:0.18, T:0.18
Consensus pattern (20 bp):
CAGCTCAATCGAGCTCAAGT
Found at i:75468640 original size:44 final size:42
Alignment explanation
Indices: 75468573--75468694 Score: 129
Period size: 44 Copynumber: 2.9 Consensus size: 42
75468563 TGATATGTGT
* *
75468573 TTTCGTGTAAGACCACGTTTGGGACATTGGCATC-AACTTATTA
1 TTTCGTGTAAGACCATGTCTGGGACATTGGCATCGAA-TT-TTA
* * *
75468616 TTTACGTGTAAGACCATGTCTGGGACATCGACATCGTATTTTA
1 TTT-CGTGTAAGACCATGTCTGGGACATTGGCATCGAATTTTA
* * * *
75468659 TTTCATGTAAGACCCTGTCTGGGATAGTGGCATCGA
1 TTTCGTGTAAGACCATGTCTGGGACATTGGCATCGA
75468695 TATTCGATTA
Statistics
Matches: 65, Mismatches: 12, Indels: 5
0.79 0.15 0.06
Matches are distributed among these distances:
42 26 0.40
43 9 0.14
44 29 0.45
45 1 0.02
ACGTcount: A:0.25, C:0.19, G:0.23, T:0.34
Consensus pattern (42 bp):
TTTCGTGTAAGACCATGTCTGGGACATTGGCATCGAATTTTA
Found at i:75468693 original size:42 final size:43
Alignment explanation
Indices: 75468573--75468713 Score: 110
Period size: 44 Copynumber: 3.3 Consensus size: 43
75468563 TGATATGTGT
* * * * *
75468573 TTTCGTGTAAGACCACGTTTGGGACATTGGCATC-A-ACTTATTA
1 TTTCATGTAAGACCATGTCTGGGACATCGACATCGATA-TT-TTA
*
75468616 TTTACGTGTAAGACCATGTCTGGGACATCGACATCG-TATTTTA
1 TTT-CATGTAAGACCATGTCTGGGACATCGACATCGATATTTTA
* * * **
75468659 TTTCATGTAAGACCCTGTCTGGGATAGT-GGCATCGATATTCGA
1 TTTCATGTAAGACCATGTCTGGGACA-TCGACATCGATATTTTA
*
75468702 TTACATGTAAGA
1 TTTCATGTAAGA
75468714 GCACATCTGG
Statistics
Matches: 82, Mismatches: 11, Indels: 10
0.80 0.11 0.10
Matches are distributed among these distances:
42 26 0.32
43 26 0.32
44 29 0.35
45 1 0.01
ACGTcount: A:0.26, C:0.18, G:0.22, T:0.34
Consensus pattern (43 bp):
TTTCATGTAAGACCATGTCTGGGACATCGACATCGATATTTTA
Found at i:75470215 original size:42 final size:43
Alignment explanation
Indices: 75470095--75470235 Score: 110
Period size: 44 Copynumber: 3.3 Consensus size: 43
75470085 CGAATTGTGT
* * * * *
75470095 TTTCGTGTAAGACCACGTTTGGGACATTGGCATC-A-ACTTATTA
1 TTTCATGTAAGACCATGTCTGGGACATCGACATCGATA-TT-TTA
*
75470138 TTTACGTGTAAGACCATGTCTGGGACATCGACATCG-TATTTTA
1 TTT-CATGTAAGACCATGTCTGGGACATCGACATCGATATTTTA
* * * **
75470181 TTTCATGTAAGACCCTGTCTGGGATAGT-GGCATCGATATTCGA
1 TTTCATGTAAGACCATGTCTGGGACA-TCGACATCGATATTTTA
*
75470224 TTACATGTAAGA
1 TTTCATGTAAGA
75470236 GCACATCTGG
Statistics
Matches: 82, Mismatches: 11, Indels: 10
0.80 0.11 0.10
Matches are distributed among these distances:
42 26 0.32
43 26 0.32
44 29 0.35
45 1 0.01
ACGTcount: A:0.26, C:0.18, G:0.22, T:0.34
Consensus pattern (43 bp):
TTTCATGTAAGACCATGTCTGGGACATCGACATCGATATTTTA
Found at i:75480820 original size:522 final size:523
Alignment explanation
Indices: 75479824--75480773 Score: 1312
Period size: 522 Copynumber: 1.8 Consensus size: 523
75479814 TCACTATAGA
* * *
75479824 TGTGACAGCCCAAAATTGACCCTAGTCGGGAAGTGGTTTCGGGACCGCTAAACCGAGTCACCGAA
1 TGTGACACCCCAAAATTGACCCTAGTCGGAAAGCGGTTTCGGGACCGCTAAACCGAGTCACCGAA
* **
75479889 ATGTTCGAATGTGATATTTATTGTCTAGAATATGTAATTATGAATGTGTGAAAATTTCAAGCTTC
66 ATATTCGAACATGATATTTATTGTCT--AATA--TAATTA-GAATGTGTGAAAATTTCAAGCTTC
** *
75479954 GATTTAGTCGATTGCATGTGAGTTTTAGTAAATAGGACTTATGTGAGAAAATTTTGAAATGTGAT
126 GATTTAGTAAATTGCATGTGAGATTTAGTAAATAGGACTTATGTGAGAAAATTTTGAAATGTGAT
* *
75480019 AGGTCAAAGCATAAGGACCTATTAGTGCATGTTGAAAAAGGGGGGACTTGCATGTCAATTTCCCC
191 AGATCAAAACATAAGGACCTATTAGTGCATGTTGAAAAAGGGGGGACTTGCATGTCAATTTCCCC
* * *
75480084 CCCTCTATTAGTAGTGGCCGGCCATGACAAGTATGGTAGACCAAGTGTGATGGGCAAGACATGTC
256 CCCTC--TTAGTAGTGGCCGGCCATGACAAGTATGGTAGACAAAGGGTGATGGGCAAAACATGTC
* * * *
75480149 ATAGACATGTTGTGTTGGTGCATCATGGGTGGAAACAATAAAATAATGAGCATGGTAATTAAATA
319 ATAGACATGTTGTGTTGGTGCATCATGGGAGGAAACAATAAAATAAAGAGCATGGCAATAAAATA
* ** *
75480214 ATGAAAGGGAGGAGTGATGAAAAAAAAAAGAATGGTCTCATCCATGCCCCCCCATTGCCGTGAGT
384 ATGAAAGGGAGGAGTAAACAAAAAAAAAAGAAAGGTCTCATCCATGCCCCCCCATTGCCGTGAGT
75480279 AAAAGAAAAGAAAAGAAAAATTTGTTCATCCTTTTTCATCTTCTTTTGGCCGAAAATTCTAAGGA
449 --AAG-AAAGAAAAGAAAAATTTGTTCATCCTTTTTCATCTTCTTTTGGCCGAAAATTCTAAGGA
75480344 AGGAGGAAGGAGT
511 AGGAGGAAGGAGT
* *
75480357 TGTGACACCCCTAATTTGACCCTAGTCGGAAAGCGGTTTCGGGACCGCTAAACCGAGTCACC-AA
1 TGTGACACCCCAAAATTGACCCTAGTCGGAAAGCGGTTTCGGGACCGCTAAACCGAGTCACCGAA
* *
75480421 ATTATTTGAACATGATATTTATTGTCT-A-A-AA-TA-AATGTGTGAAAATTTTAAGCTTCGATT
66 A-TATTCGAACATGATATTTATTGTCTAATATAATTAGAATGTGTGAAAATTTCAAGCTTCGATT
* * * * *
75480481 TAGTAAATTTCATGTGA-ATTTAGTCAATAGGACTTATGTGTGACATTTTTGAAATGTGATAGAT
130 TAGTAAATTGCATGTGAGATTTAGTAAATAGGACTTATGTGAGAAAATTTTGAAATGTGATAGAT
75480545 CAAAACATAAGGACCTATTAGTGCATGTTGAAAAAGGGGGGACTTGCATGTCAATTTCCCCCCCA
195 CAAAACATAAGGACCTATTAGTGCATGTTGAAAAAGGGGGGACTTGCATGTCAATTTCCCCCCC-
* *
75480610 TC-TAGTAGTGG-CGAGCCATGAC-ATTA-GGATGGACAAAGGGTGATGGGCAAAACATGTCATA
259 TCTTAGTAGTGGCCG-GCCATGACAAGTATGG-TAGACAAAGGGTGATGGGCAAAACATGTCATA
75480671 GACATGTTGTGTTGGTGCATCATGGGAGGAAACAATAAAATAAAGAGCATGGGCAATAAAATATT
322 GACATGTTGTGTTGGTGCATCATGGGAGGAAACAATAAAATAAAGAGCAT-GGCAATAAAATA--
** *
75480736 AGTGTTAGTAGGATGAG-AAACAAAAAAAAAAGAAAGGT
384 A-TGAAAG--GGAGGAGTAAACAAAAAAAAAAGAAAGGT
75480774 TATGTGTGAT
Statistics
Matches: 371, Mismatches: 36, Indels: 29
0.85 0.08 0.07
Matches are distributed among these distances:
518 2 0.01
519 81 0.22
520 27 0.07
522 105 0.28
523 46 0.12
524 17 0.05
525 8 0.02
526 2 0.01
529 1 0.00
530 1 0.00
532 3 0.01
533 78 0.21
ACGTcount: A:0.34, C:0.14, G:0.24, T:0.28
Consensus pattern (523 bp):
TGTGACACCCCAAAATTGACCCTAGTCGGAAAGCGGTTTCGGGACCGCTAAACCGAGTCACCGAA
ATATTCGAACATGATATTTATTGTCTAATATAATTAGAATGTGTGAAAATTTCAAGCTTCGATTT
AGTAAATTGCATGTGAGATTTAGTAAATAGGACTTATGTGAGAAAATTTTGAAATGTGATAGATC
AAAACATAAGGACCTATTAGTGCATGTTGAAAAAGGGGGGACTTGCATGTCAATTTCCCCCCCTC
TTAGTAGTGGCCGGCCATGACAAGTATGGTAGACAAAGGGTGATGGGCAAAACATGTCATAGACA
TGTTGTGTTGGTGCATCATGGGAGGAAACAATAAAATAAAGAGCATGGCAATAAAATAATGAAAG
GGAGGAGTAAACAAAAAAAAAAGAAAGGTCTCATCCATGCCCCCCCATTGCCGTGAGTAAGAAAG
AAAAGAAAAATTTGTTCATCCTTTTTCATCTTCTTTTGGCCGAAAATTCTAAGGAAGGAGGAAGG
AGT
Found at i:75482907 original size:47 final size:47
Alignment explanation
Indices: 75482785--75482993 Score: 301
Period size: 47 Copynumber: 4.4 Consensus size: 47
75482775 CAGCCAAGAC
*
75482785 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
75482832 AGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
75482881 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* * * * * * * *
75482928 AGGGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* *
75482975 AGTGCATAAATGTGATAAG
1 AGTGTATATATGTGATAAG
75482994 TTTCGAAGGG
Statistics
Matches: 146, Mismatches: 14, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
47 100 0.68
49 46 0.32
ACGTcount: A:0.33, C:0.09, G:0.31, T:0.28
Consensus pattern (47 bp):
AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
Found at i:75483168 original size:37 final size:37
Alignment explanation
Indices: 75483112--75483190 Score: 115
Period size: 37 Copynumber: 2.1 Consensus size: 37
75483102 CCGAGCTCTA
* *
75483112 AAGACCCGATGACTACGTGTGG-GAATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAG-ATTATGTCCGGGT
*
75483149 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
75483186 AAGAC
1 AAGAC
75483191 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
37 37 0.97
38 1 0.03
ACGTcount: A:0.25, C:0.19, G:0.30, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:75485092 original size:43 final size:43
Alignment explanation
Indices: 75485044--75485186 Score: 268
Period size: 43 Copynumber: 3.3 Consensus size: 43
75485034 TTGGTTTTCA
75485044 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
* *
75485087 GCACTAAGTGTGCGGGCAATCAGTGTTCACGGTTGCGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
75485130 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
75485173 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
75485187 TGTAACACCC
Statistics
Matches: 96, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
43 96 1.00
ACGTcount: A:0.22, C:0.16, G:0.35, T:0.27
Consensus pattern (43 bp):
GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
Found at i:75487546 original size:40 final size:40
Alignment explanation
Indices: 75487491--75487608 Score: 166
Period size: 40 Copynumber: 3.0 Consensus size: 40
75487481 AAGCACTATG
*
75487491 TGTGCGAATTGATATATCCGGGATAAGACCTGAAGGCATT
1 TGTGCGAATTGATATATCCGGGATAAGACCCGAAGGCATT
*
75487531 TGTGCGAATTGATATATCCGGGCTAAGACCCGAAGGCATT
1 TGTGCGAATTGATATATCCGGGATAAGACCCGAAGGCATT
* * * *
75487571 CGTGCGAGTTGCTATA-CTCGGGTTAAGACCCGAAGGCA
1 TGTGCGAATTGATATATC-CGGGATAAGACCCGAAGGCA
75487609 ATTGAGCTTG
Statistics
Matches: 71, Mismatches: 6, Indels: 2
0.90 0.08 0.03
Matches are distributed among these distances:
39 1 0.01
40 70 0.99
ACGTcount: A:0.27, C:0.19, G:0.29, T:0.25
Consensus pattern (40 bp):
TGTGCGAATTGATATATCCGGGATAAGACCCGAAGGCATT
Found at i:75487738 original size:40 final size:40
Alignment explanation
Indices: 75487543--75487741 Score: 156
Period size: 40 Copynumber: 5.0 Consensus size: 40
75487533 TGCGAATTGA
** *
75487543 TATATCCGGGCTAAGACCCGAAG-GCATTCGTGC-GAGTTGC
1 TATATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTG-G-TGT
* ** * *
75487583 TATA-CTCGGGTTAAGACCCGAAG-GCAATT-GAGCTTGTGGT
1 TATATC-CGGGCTAAGTTCCGAAGAGC-ATTCGTGCTGGT-GT
* * *
75487623 TATATCCGGGCTAAATTCCGAAGAGCATTCGTGCTAGTGA
1 TATATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTGGTGT
** *
75487663 GGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCTGGTGT
1 TATATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTGGTGT
* * * *
75487703 TATATCCGGGCTAGGTCCCGAAGAGCAATCATGCTGGTG
1 TATATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTGGTG
75487742 ACATGTATTC
Statistics
Matches: 128, Mismatches: 24, Indels: 14
0.77 0.14 0.08
Matches are distributed among these distances:
39 2 0.02
40 114 0.89
41 12 0.09
ACGTcount: A:0.24, C:0.21, G:0.30, T:0.26
Consensus pattern (40 bp):
TATATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTGGTGT
Found at i:75491398 original size:47 final size:48
Alignment explanation
Indices: 75491281--75491528 Score: 333
Period size: 47 Copynumber: 5.2 Consensus size: 48
75491271 AATTCTAAAT
75491281 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATA
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG-ATATATA
* *
75491330 TGTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTG-TATATG
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGATATATA
* * *
75491377 TGCGATAAGGCCTAATAGCCGATGTGATAAATGTGAAAGTGTATATATA
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG-ATATATA
*
75491426 TGTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTG-TATATA
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGATATATA
* * * * * *
75491473 TGTGACAGGGCCGAGTGGCCAATGTGATGGATGTGAAAGTGCATA-A-A
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG-ATATATA
75491520 TGTGATAAG
1 TGTGATAAG
75491529 TCCCGAAGGG
Statistics
Matches: 175, Mismatches: 20, Indels: 10
0.85 0.10 0.05
Matches are distributed among these distances:
47 90 0.51
48 1 0.01
49 84 0.48
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.29
Consensus pattern (48 bp):
TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGATATATA
Found at i:75491428 original size:96 final size:96
Alignment explanation
Indices: 75491284--75491528 Score: 377
Period size: 96 Copynumber: 2.6 Consensus size: 96
75491274 TCTAAATTGT
75491284 GATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCTTAATGGC
1 GATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCTTAATGGC
*
75491349 CGATGTGATGAATGTGAAAGTGTATATGTGC
66 CGATGTGATGAATGTGAAAGTGTATATATGC
* *
75491380 GATAAGGCCTAATAGCCGATGTGATAAATGTGAAAGTGTATATATATGTGATAAGGCTTAATGGC
1 GATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCTTAATGGC
*
75491445 CGATGTGATGAATGTGAAAGTGTATATATGT
66 CGATGTGATGAATGTGAAAGTGTATATATGC
* * * * * * *
75491476 GACAGGGCCGAGTGGCCAATGTGATGGATGTGAAAGTGCATA-A-ATGTGATAAG
1 GATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAG
75491529 TCCCGAAGGG
Statistics
Matches: 136, Mismatches: 13, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
94 10 0.07
95 1 0.01
96 125 0.92
ACGTcount: A:0.33, C:0.09, G:0.30, T:0.29
Consensus pattern (96 bp):
GATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCTTAATGGC
CGATGTGATGAATGTGAAAGTGTATATATGC
Found at i:75492883 original size:192 final size:192
Alignment explanation
Indices: 75492556--75492940 Score: 761
Period size: 192 Copynumber: 2.0 Consensus size: 192
75492546 AAGAGATATT
*
75492556 CAGGTTCTCGTGAGACAGGGCCAGAACGGTTTCTGGATTCCCTGTTCCGACTTTGGAAATTCATT
1 CAGGTTCGCGTGAGACAGGGCCAGAACGGTTTCTGGATTCCCTGTTCCGACTTTGGAAATTCATT
75492621 ATAAATTAACCAGAGACAATTAGGAGTTATTCCATATATTTCTGGATTCCTCTCTGAGTCTAGTT
66 ATAAATTAACCAGAGACAATTAGGAGTTATTCCATATATTTCTGGATTCCTCTCTGAGTCTAGTT
75492686 TCTATAGAGACAAACAGCATCAGTATTGAAGCCCTGTGGAGGGAGATATCCAAGTCGTAATG
131 TCTATAGAGACAAACAGCATCAGTATTGAAGCCCTGTGGAGGGAGATATCCAAGTCGTAATG
75492748 CAGGTTCGCGTGAGACAGGGCCAGAACGGTTTCTGGATTCCCTGTTCCGACTTTGGAAATTCATT
1 CAGGTTCGCGTGAGACAGGGCCAGAACGGTTTCTGGATTCCCTGTTCCGACTTTGGAAATTCATT
75492813 ATAAATTAACCAGAGACAATTAGGAGTTATTCCATATATTTCTGGATTCCTCTCTGAGTCTAGTT
66 ATAAATTAACCAGAGACAATTAGGAGTTATTCCATATATTTCTGGATTCCTCTCTGAGTCTAGTT
75492878 TCTATAGAGACAAACAGCATCAGTATTGAAGCCCTGTGGAGGGAGATATCCAAGTCGTAATG
131 TCTATAGAGACAAACAGCATCAGTATTGAAGCCCTGTGGAGGGAGATATCCAAGTCGTAATG
75492940 C
1 C
75492941 GCAAAGGTCA
Statistics
Matches: 192, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
192 192 1.00
ACGTcount: A:0.28, C:0.19, G:0.23, T:0.30
Consensus pattern (192 bp):
CAGGTTCGCGTGAGACAGGGCCAGAACGGTTTCTGGATTCCCTGTTCCGACTTTGGAAATTCATT
ATAAATTAACCAGAGACAATTAGGAGTTATTCCATATATTTCTGGATTCCTCTCTGAGTCTAGTT
TCTATAGAGACAAACAGCATCAGTATTGAAGCCCTGTGGAGGGAGATATCCAAGTCGTAATG
Found at i:75499860 original size:25 final size:25
Alignment explanation
Indices: 75499826--75499895 Score: 95
Period size: 25 Copynumber: 2.8 Consensus size: 25
75499816 ATCTTTTAAT
* *
75499826 AATTGAGGCAAAGCCCTTTTTGATA
1 AATTGGGGCAAAGCCCTTTTGGATA
75499851 AATTGGGGCAAAGCCCTTTTGGATA
1 AATTGGGGCAAAGCCCTTTTGGATA
* * *
75499876 AACTGGGGCATAGCTCTTTT
1 AATTGGGGCAAAGCCCTTTT
75499896 AGCACTTCCT
Statistics
Matches: 40, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
25 40 1.00
ACGTcount: A:0.27, C:0.17, G:0.24, T:0.31
Consensus pattern (25 bp):
AATTGGGGCAAAGCCCTTTTGGATA
Found at i:75499871 original size:24 final size:24
Alignment explanation
Indices: 75499818--75499895 Score: 86
Period size: 25 Copynumber: 3.2 Consensus size: 24
75499808 GGCCTAGCAT
* *
75499818 CTTTTAAT-AATTGAGGCAAAGCC
1 CTTTTGATAAATTGGGGCAAAGCC
75499841 CTTTTTGATAAATTGGGGCAAAGCC
1 C-TTTTGATAAATTGGGGCAAAGCC
* * *
75499866 CTTTTGGATAAACTGGGGCATAGCT
1 CTTTT-GATAAATTGGGGCAAAGCC
75499891 CTTTT
1 CTTTT
75499896 AGCACTTCCT
Statistics
Matches: 47, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
23 1 0.02
24 10 0.21
25 36 0.77
ACGTcount: A:0.27, C:0.17, G:0.22, T:0.35
Consensus pattern (24 bp):
CTTTTGATAAATTGGGGCAAAGCC
Found at i:75500129 original size:27 final size:27
Alignment explanation
Indices: 75500099--75500365 Score: 339
Period size: 27 Copynumber: 10.1 Consensus size: 27
75500089 GGGCAAAATG
* * * *
75500099 GTAATTTTACCCTATAAGGGTATCTCA
1 GTAATTCTACCCTACAGGGGTATTTCA
* *
75500126 GTAATTCTACCCTAAAGGGGTATTTCG
1 GTAATTCTACCCTACAGGGGTATTTCA
*
75500153 GTAATTCTACCCTACAGGGGTATTTCG
1 GTAATTCTACCCTACAGGGGTATTTCA
* *
75500180 GTAGTTCTACCCTAC-----TATTTCG
1 GTAATTCTACCCTACAGGGGTATTTCA
* *
75500202 GTGATTCTACCCTACAGGGGTATTTCG
1 GTAATTCTACCCTACAGGGGTATTTCA
* *
75500229 GTAGTTCTACCCTACAGGGGTATTTCG
1 GTAATTCTACCCTACAGGGGTATTTCA
* *
75500256 GTAGTTCTACCCTATAGGGGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCA
*
75500283 GTAATTCTACCCTATAGGGGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCA
75500310 GTAATTCTACCCTA-AGGGGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCA
*
75500336 GTAATTCTACCCTACAAGGGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCA
75500363 GTA
1 GTA
75500366 TTTTACGAAT
Statistics
Matches: 219, Mismatches: 15, Indels: 12
0.89 0.06 0.05
Matches are distributed among these distances:
22 20 0.09
26 26 0.12
27 173 0.79
ACGTcount: A:0.24, C:0.21, G:0.20, T:0.35
Consensus pattern (27 bp):
GTAATTCTACCCTACAGGGGTATTTCA
Found at i:75500221 original size:76 final size:76
Alignment explanation
Indices: 75500123--75500350 Score: 323
Period size: 76 Copynumber: 2.9 Consensus size: 76
75500113 TAAGGGTATC
75500123 TCAGTAATTCTACCCTAAAGGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCGGTAGTTCT
1 TCAGTAATTCTACCCTAAAGGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCGGTAGTTCT
75500188 ACCCTACTATT
66 ACCCTACTATT
* * * *
75500199 TCGGTGATTCTACCCTACAGGGGTATTTCGGTAGTTCTACCCTACAGGGGTATTTCGGTAGTTCT
1 TCAGTAATTCTACCCTAAAGGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCGGTAGTTCT
*
75500264 ACCCTATAGGGGTATT
66 ACCC--TA---CTATT
* * * *
75500280 TCAGTAATTCTACCCTATAGGGGTATTTCAGTAATTCTACCCTA-AGGGGTATTTCAGTAATTCT
1 TCAGTAATTCTACCCTAAAGGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCGGTAGTTCT
75500344 ACCCTAC
66 ACCCTAC
75500351 AAGGGTATTT
Statistics
Matches: 134, Mismatches: 13, Indels: 11
0.85 0.08 0.07
Matches are distributed among these distances:
76 65 0.49
78 4 0.03
80 22 0.16
81 43 0.32
ACGTcount: A:0.23, C:0.22, G:0.20, T:0.35
Consensus pattern (76 bp):
TCAGTAATTCTACCCTAAAGGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCGGTAGTTCT
ACCCTACTATT
Found at i:75500291 original size:103 final size:104
Alignment explanation
Indices: 75500099--75500361 Score: 341
Period size: 103 Copynumber: 2.5 Consensus size: 104
75500089 GGGCAAAATG
* * * *
75500099 GTAATTTTACCCTATAAGGGTATCTCAGTAATTCTACCCTAAAGGGGTATTTCGGTAATTCTACC
1 GTAATTCTACCCTA-AGGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACC
* * *
75500164 CTACAGGGGTATTTCGGTAGTTCTACCC-TA-CTATTTCG
65 CTACAGGGGTATTTCAGTAATTCTACCCATAGCTATTTCA
* * * *
75500202 GTGATTCTACCCTACAGGGGTATTTCGGTAGTTCTACCCTACAGGGGTATTTCGGTAGTTCTACC
1 GTAATTCTACCCTA-AGGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACC
* *
75500267 CTATAGGGGTATTTCAGTAATTCTACCCTATAGGGGTATTTCA
65 CTACAGGGGTATTTCAGTAATTCTACCC-ATA--GCTATTTCA
*
75500310 GTAATTCTACCCTAAGGGGTATTTCAGTAATTCTACCCTACAAGGGTATTTC
1 GTAATTCTACCCTAAGGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTC
75500362 AGTATTTTAC
Statistics
Matches: 137, Mismatches: 18, Indels: 6
0.85 0.11 0.04
Matches are distributed among these distances:
103 81 0.59
105 2 0.01
107 35 0.26
108 19 0.14
ACGTcount: A:0.24, C:0.21, G:0.20, T:0.35
Consensus pattern (104 bp):
GTAATTCTACCCTAAGGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCC
TACAGGGGTATTTCAGTAATTCTACCCATAGCTATTTCA
Found at i:75500434 original size:27 final size:27
Alignment explanation
Indices: 75500406--75500544 Score: 208
Period size: 27 Copynumber: 5.2 Consensus size: 27
75500396 CACAAATTAG
*
75500406 GGGTATTTTGGTAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTACAAACCAA
* *
75500433 GGGTATTTTGGTAATTTTATAAACTAA
1 GGGTATTTTGGTAATTTTACAAACCAA
*
75500460 GGGTATTTTAGTAATTTTACAAACCAA
1 GGGTATTTTGGTAATTTTACAAACCAA
*
75500487 TGGTATTTTGGTAATTTTACAAACC-A
1 GGGTATTTTGGTAATTTTACAAACCAA
**
75500513 GGGTATTTTGGTAATTTTGTAAACCAA
1 GGGTATTTTGGTAATTTTACAAACCAA
75500540 GGGTA
1 GGGTA
75500545 AAACGATAAT
Statistics
Matches: 100, Mismatches: 11, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
26 23 0.23
27 77 0.77
ACGTcount: A:0.32, C:0.09, G:0.20, T:0.40
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTACAAACCAA
Found at i:75500448 original size:54 final size:53
Alignment explanation
Indices: 75500390--75500544 Score: 211
Period size: 54 Copynumber: 2.9 Consensus size: 53
75500380 GGTTTTTCGA
* * *
75500390 TAATTTCACAAATTAGGGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGG
1 TAATTTTACAAACTA-GGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTGG
* * *
75500444 TAATTTTATAAACTAAGGGTATTTTAGTAATTTTACAAACCAATGGTATTTTGG
1 TAATTTTACAAACT-AGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTGG
* **
75500498 TAATTTTACAAACCAGGGTATTTTGGTAATTTTGTAAACCAAGGGTA
1 TAATTTTACAAACTAGGGTATTTTGGTAATTTTACAAACCAAGGGTA
75500545 AAACGATAAT
Statistics
Matches: 88, Mismatches: 12, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
53 29 0.33
54 58 0.66
55 1 0.01
ACGTcount: A:0.33, C:0.09, G:0.19, T:0.39
Consensus pattern (53 bp):
TAATTTTACAAACTAGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTGG
Found at i:75500623 original size:81 final size:81
Alignment explanation
Indices: 75500495--75500760 Score: 320
Period size: 81 Copynumber: 3.3 Consensus size: 81
75500485 AATGGTATTT
* * *** * *
75500495 TGGTAATTTTACAAA-CCAGGGTATTTTGGTAATTTTGTAAACCAAGGGTAAAACGATAATTCTG
1 TGGTAATTTTATAAATCGAGGGTAAAATGGTAATTTTATAAATCAAGGGTAAAACGATAATTCTG
*
75500559 TAAATCGAGGGTAAAA
66 TAAATCAAGGGTAAAA
* * * *
75500575 TAGTAATTTTATAAATCGAGGGTAAAATGGTAATTTTATAAATTAAGGGTAAAA-TAGTAATTTT
1 TGGTAATTTTATAAATCGAGGGTAAAATGGTAATTTTATAAATCAAGGGTAAAACGA-TAATTCT
*
75500639 GTAAATTAAGGGTAAAA
65 GTAAATCAAGGGTAAAA
* * * * * *
75500656 CGGTAATTCTATAAATCGAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAACGGTAATTCTA
1 TGGTAATTTTATAAATCGAGGGTAAAATGGTAATTTTATAAATCAAGGGTAAAACGATAATTCTG
75500721 TAAATCAAGGGTAAAA
66 TAAATCAAGGGTAAAA
* *
75500737 TGGTAATTTTGTAAATCGGGGGTA
1 TGGTAATTTTATAAATCGAGGGTA
75500761 CTTTGATAAT
Statistics
Matches: 155, Mismatches: 28, Indels: 5
0.82 0.15 0.03
Matches are distributed among these distances:
80 14 0.09
81 141 0.91
ACGTcount: A:0.40, C:0.07, G:0.21, T:0.32
Consensus pattern (81 bp):
TGGTAATTTTATAAATCGAGGGTAAAATGGTAATTTTATAAATCAAGGGTAAAACGATAATTCTG
TAAATCAAGGGTAAAA
Found at i:75500754 original size:54 final size:54
Alignment explanation
Indices: 75500521--75500760 Score: 327
Period size: 54 Copynumber: 4.4 Consensus size: 54
75500511 CAGGGTATTT
* * * * *
75500521 TGGTAATTTTGTAAACCAAGGGTAAAACGATAATTCTGTAAATCGAGGGTAAAA
1 TGGTAATTTTGTAAATCGAGGGTAAAACGGTAATTCTATAAATCAAGGGTAAAA
* * * * *
75500575 TAGTAATTTTATAAATCGAGGGTAAAATGGTAATTTTATAAATTAAGGGTAAAA
1 TGGTAATTTTGTAAATCGAGGGTAAAACGGTAATTCTATAAATCAAGGGTAAAA
* ** *
75500629 TAGTAATTTTGTAAATTAAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAA
1 TGGTAATTTTGTAAATCGAGGGTAAAACGGTAATTCTATAAATCAAGGGTAAAA
* *
75500683 TGGTAATTCTATAAATCGAGGGTAAAACGGTAATTCTATAAATCAAGGGTAAAA
1 TGGTAATTTTGTAAATCGAGGGTAAAACGGTAATTCTATAAATCAAGGGTAAAA
*
75500737 TGGTAATTTTGTAAATCGGGGGTA
1 TGGTAATTTTGTAAATCGAGGGTA
75500761 CTTTGATAAT
Statistics
Matches: 160, Mismatches: 26, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
54 160 1.00
ACGTcount: A:0.41, C:0.06, G:0.22, T:0.31
Consensus pattern (54 bp):
TGGTAATTTTGTAAATCGAGGGTAAAACGGTAATTCTATAAATCAAGGGTAAAA
Found at i:75500759 original size:27 final size:27
Alignment explanation
Indices: 75500495--75500787 Score: 282
Period size: 27 Copynumber: 10.9 Consensus size: 27
75500485 AATGGTATTT
* * ***
75500495 TGGTAATTTTACAAA-CCAGGGTATTT
1 TGGTAATTTTATAAATCGAGGGTAAAA
* * *
75500521 TGGTAATTTTGTAAACCAAGGGTAAAA
1 TGGTAATTTTATAAATCGAGGGTAAAA
* * * *
75500548 CGATAATTCTGTAAATCGAGGGTAAAA
1 TGGTAATTTTATAAATCGAGGGTAAAA
*
75500575 TAGTAATTTTATAAATCGAGGGTAAAA
1 TGGTAATTTTATAAATCGAGGGTAAAA
**
75500602 TGGTAATTTTATAAATTAAGGGTAAAA
1 TGGTAATTTTATAAATCGAGGGTAAAA
* * **
75500629 TAGTAATTTTGTAAATTAAGGGTAAAA
1 TGGTAATTTTATAAATCGAGGGTAAAA
* *
75500656 CGGTAATTCTATAAATCGAGGGTAAAA
1 TGGTAATTTTATAAATCGAGGGTAAAA
*
75500683 TGGTAATTCTATAAATCGAGGGTAAAA
1 TGGTAATTTTATAAATCGAGGGTAAAA
* * *
75500710 CGGTAATTCTATAAATCAAGGGTAAAA
1 TGGTAATTTTATAAATCGAGGGTAAAA
* * ***
75500737 TGGTAATTTTGTAAATCGGGGGTACTT
1 TGGTAATTTTATAAATCGAGGGTAAAA
* * *
75500764 TGATAATTTTACAAGTCGAGGGTA
1 TGGTAATTTTATAAATCGAGGGTA
75500788 TTTCAGTAAT
Statistics
Matches: 223, Mismatches: 43, Indels: 1
0.84 0.16 0.00
Matches are distributed among these distances:
26 13 0.06
27 210 0.94
ACGTcount: A:0.39, C:0.07, G:0.22, T:0.32
Consensus pattern (27 bp):
TGGTAATTTTATAAATCGAGGGTAAAA
Found at i:75500797 original size:27 final size:27
Alignment explanation
Indices: 75500656--75500907 Score: 167
Period size: 27 Copynumber: 9.4 Consensus size: 27
75500646 AAGGGTAAAA
* * **
75500656 CGGTAATTCTATAAATCGAGGGTAAAAT
1 CGGTAATTTTACAAATCGAGGGT-ATTT
* * ***
75500684 -GGTAATTCTATAAATCGAGGGTAAAA
1 CGGTAATTTTACAAATCGAGGGTATTT
* * * **
75500710 CGGTAATTCTATAAATCAAGGGTAAAAT
1 CGGTAATTTTACAAATCGAGGGT-ATTT
** *
75500738 -GGTAATTTTGTAAATCGGGGGTACTTT
1 CGGTAATTTTACAAATCGAGGGTA-TTT
* *
75500765 -GATAATTTTACAAGTCGAGGGTATTT
1 CGGTAATTTTACAAATCGAGGGTATTT
* *
75500791 CAGTAATTTTAC-AATCGACGGT-TTT
1 CGGTAATTTTACAAATCGAGGGTATTT
*
75500816 CGGTAATTTTATAAATC-AGGGGTACTTT
1 CGGTAATTTTACAAATCGA-GGGTA-TTT
* * *
75500844 -GGTAATTTTACAAGTCCAAGGTATTT
1 CGGTAATTTTACAAATCGAGGGTATTT
*
75500870 CAGTAATTTTACAAATCGAGGGTATTT
1 CGGTAATTTTACAAATCGAGGGTATTT
*
75500897 TGGTAATTTTA
1 CGGTAATTTTA
75500908 GTAAACTAAA
Statistics
Matches: 184, Mismatches: 30, Indels: 21
0.78 0.13 0.09
Matches are distributed among these distances:
25 14 0.08
26 25 0.14
27 138 0.75
28 7 0.04
ACGTcount: A:0.33, C:0.10, G:0.21, T:0.36
Consensus pattern (27 bp):
CGGTAATTTTACAAATCGAGGGTATTT
Found at i:75500797 original size:81 final size:81
Alignment explanation
Indices: 75500551--75500912 Score: 268
Period size: 81 Copynumber: 4.5 Consensus size: 81
75500541 GGTAAAACGA
* * *
75500551 TAATTCTGTAAATCGAGGGTAAAATAGTAATTTTATAAATCGAGGGTAAAATGGTAATTTTATAA
1 TAATTCTATAAATCGAGGGTAAAATGGTAATTTTATAAATCGAGGGTAAAATGGTAATTTTACAA
**
75500616 ATTAAGGGTAAAAT-AG
66 ATCGAGGGT-AAATCAG
* * ** * * * *
75500632 TAATTTTGTAAATTAAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAATGGTAATTCTATAA
1 TAATTCTATAAATCGAGGGTAAAATGGTAATTTTATAAATCGAGGGTAAAATGGTAATTTTACAA
* *
75500697 ATCGAGGGTAAAACGG
66 ATCGAGGGTAAATCAG
* * * *** *
75500713 TAATTCTATAAATCAAGGGTAAAATGGTAATTTTGTAAATCGGGGGTACTTTGATAATTTTACAA
1 TAATTCTATAAATCGAGGGTAAAATGGTAATTTTATAAATCGAGGGTAAAATGGTAATTTTACAA
* **
75500778 GTCGAGGGTATTTCAG
66 ATCGAGGGTAAATCAG
* ** ***
75500794 TAATT-T-TACAATCGACGGT--TTTCGGTAATTTTATAAATC-AGGGGTACTTTGGTAATTTTA
1 TAATTCTATA-AATCGAGGGTAAAAT-GGTAATTTTATAAATCGA-GGGTAAAATGGTAATTTTA
* * * **
75500854 CAAGTCCAAGGTATTTCAG
63 CAAATCGAGGGTAAATCAG
* * ***
75500873 TAATTTTACAAATCGAGGGTATTTTGGTAATTTTAGTAAA
1 TAATTCTATAAATCGAGGGTAAAATGGTAATTTTA-TAAA
75500913 CTAAAGTATT
Statistics
Matches: 232, Mismatches: 40, Indels: 17
0.80 0.14 0.06
Matches are distributed among these distances:
78 1 0.00
79 57 0.25
80 22 0.09
81 145 0.62
82 7 0.03
ACGTcount: A:0.36, C:0.08, G:0.20, T:0.35
Consensus pattern (81 bp):
TAATTCTATAAATCGAGGGTAAAATGGTAATTTTATAAATCGAGGGTAAAATGGTAATTTTACAA
ATCGAGGGTAAATCAG
Found at i:75500841 original size:79 final size:81
Alignment explanation
Indices: 75500738--75500912 Score: 264
Period size: 79 Copynumber: 2.2 Consensus size: 81
75500728 AGGGTAAAAT
* * * *
75500738 GGTAATTTTGTAAATCGGGGGTACTTTGATAATTTTACAAGTCGAGGGTATTTCAGTAATTTTAC
1 GGTAATTTTATAAATCAGGGGTACTTTGATAATTTTACAAGTCCAAGGTATTTCAGTAATTTTAC
75500803 -AATCGACGGT-TTTC
66 AAATCGACGGTATTTC
*
75500817 GGTAATTTTATAAATCAGGGGTACTTTGGTAATTTTACAAGTCCAAGGTATTTCAGTAATTTTAC
1 GGTAATTTTATAAATCAGGGGTACTTTGATAATTTTACAAGTCCAAGGTATTTCAGTAATTTTAC
* *
75500882 AAATCGAGGGTATTTT
66 AAATCGACGGTATTTC
75500898 GGTAATTTTAGTAAA
1 GGTAATTTTA-TAAA
75500913 CTAAAGTATT
Statistics
Matches: 86, Mismatches: 7, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
79 60 0.70
80 9 0.10
81 13 0.15
82 4 0.05
ACGTcount: A:0.30, C:0.10, G:0.21, T:0.39
Consensus pattern (81 bp):
GGTAATTTTATAAATCAGGGGTACTTTGATAATTTTACAAGTCCAAGGTATTTCAGTAATTTTAC
AAATCGACGGTATTTC
Found at i:75503272 original size:25 final size:25
Alignment explanation
Indices: 75503253--75503341 Score: 151
Period size: 25 Copynumber: 3.6 Consensus size: 25
75503243 TATAACTAGA
75503253 GGCAAAGCCCTTTTTGATAAACTGG
1 GGCAAAGCCCTTTTTGATAAACTGG
*
75503278 GGCAAAGCCCTTTTTGATAAACTAG
1 GGCAAAGCCCTTTTTGATAAACTGG
*
75503303 GGCAAAGCCCTTTTCGATAAACTGG
1 GGCAAAGCCCTTTTTGATAAACTGG
*
75503328 GGCATAGCCCTTTT
1 GGCAAAGCCCTTTT
75503342 AGAACTTCCT
Statistics
Matches: 60, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
25 60 1.00
ACGTcount: A:0.27, C:0.22, G:0.22, T:0.28
Consensus pattern (25 bp):
GGCAAAGCCCTTTTTGATAAACTGG
Found at i:75503308 original size:50 final size:51
Alignment explanation
Indices: 75503246--75503341 Score: 167
Period size: 50 Copynumber: 1.9 Consensus size: 51
75503236 TTTATCATAT
*
75503246 AACTAGAGGCAAAGCCCTTTTTGATAAACTGGGGCAAAGCCCTTTTTGATA
1 AACTAGAGGCAAAGCCCTTTTCGATAAACTGGGGCAAAGCCCTTTTTGATA
*
75503297 AACTAG-GGCAAAGCCCTTTTCGATAAACTGGGGCATAGCCCTTTT
1 AACTAGAGGCAAAGCCCTTTTCGATAAACTGGGGCAAAGCCCTTTT
75503342 AGAACTTCCT
Statistics
Matches: 43, Mismatches: 2, Indels: 1
0.93 0.04 0.02
Matches are distributed among these distances:
50 37 0.86
51 6 0.14
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.27
Consensus pattern (51 bp):
AACTAGAGGCAAAGCCCTTTTCGATAAACTGGGGCAAAGCCCTTTTTGATA
Found at i:75503763 original size:27 final size:27
Alignment explanation
Indices: 75503544--75503759 Score: 263
Period size: 27 Copynumber: 8.0 Consensus size: 27
75503534 GGGGCAAAAT
* * *
75503544 GGTAATTTTACCCCACAAGGGTATCTC
1 GGTAATTCTACCCTACAAGGGTATTTC
75503571 GGTAATTCTACCCTAC-AGGGATATTTC
1 GGTAATTCTACCCTACAAGGG-TATTTC
* *
75503598 GGTAGTTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* ** *
75503625 GATGGTTCTACCTTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
75503652 GGTAGTTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* * *
75503679 GGTAATTTTACCTTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
75503706 AGTAATTCTACCCTACAAGGGGATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
75503733 AGTAATTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
75503760 AGTATTTTAC
Statistics
Matches: 165, Mismatches: 22, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
26 4 0.02
27 158 0.96
28 3 0.02
ACGTcount: A:0.24, C:0.21, G:0.21, T:0.34
Consensus pattern (27 bp):
GGTAATTCTACCCTACAAGGGTATTTC
Found at i:75503848 original size:27 final size:27
Alignment explanation
Indices: 75503763--75503849 Score: 95
Period size: 27 Copynumber: 3.2 Consensus size: 27
75503753 GTATTTCAGT
* * *
75503763 ATTTTACGAATC-GAGGTTTTTTCGATA
1 ATTTTACAAATCAGAGGTATTTTGGA-A
* * * *
75503790 ATTTCACAAATTAGGGGTATTTTGGTA
1 ATTTTACAAATCAGAGGTATTTTGGAA
75503817 ATTTTACAAATCAGAGGTATTTTGGAA
1 ATTTTACAAATCAGAGGTATTTTGGAA
75503844 ATTTTA
1 ATTTTA
75503850 TAAACATTTT
Statistics
Matches: 48, Mismatches: 11, Indels: 2
0.79 0.18 0.03
Matches are distributed among these distances:
27 39 0.81
28 9 0.19
ACGTcount: A:0.31, C:0.08, G:0.18, T:0.43
Consensus pattern (27 bp):
ATTTTACAAATCAGAGGTATTTTGGAA
Found at i:75503859 original size:38 final size:38
Alignment explanation
Indices: 75503817--75503892 Score: 91
Period size: 38 Copynumber: 2.0 Consensus size: 38
75503807 TATTTTGGTA
* * *
75503817 ATTTTACAAATC-AGAGGTATTTTGGAAATTTTATAAAC
1 ATTTTACAAACCAAG-GGTATTTTAGAAATTTTACAAAC
* *
75503855 ATTTTATAAACCAAGGGTATTTTAGTAATTTTACAAAC
1 ATTTTACAAACCAAGGGTATTTTAGAAATTTTACAAAC
75503893 CAAGGGTATT
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
38 30 0.94
39 2 0.06
ACGTcount: A:0.39, C:0.09, G:0.12, T:0.39
Consensus pattern (38 bp):
ATTTTACAAACCAAGGGTATTTTAGAAATTTTACAAAC
Found at i:75503887 original size:27 final size:27
Alignment explanation
Indices: 75503855--75503954 Score: 155
Period size: 27 Copynumber: 3.7 Consensus size: 27
75503845 TTTTATAAAC
* *
75503855 ATTTTATAAACCAAGGGTATTTTAGTA
1 ATTTTACAAACCAAGGGTATTTTGGTA
75503882 ATTTTACAAACCAAGGGTATTTTGGTA
1 ATTTTACAAACCAAGGGTATTTTGGTA
*
75503909 ATTTTACAAACCAGGGGTATTTTGGTA
1 ATTTTACAAACCAAGGGTATTTTGGTA
**
75503936 ATTTTGTAAACCAAGGGTA
1 ATTTTACAAACCAAGGGTA
75503955 AAATAATAAT
Statistics
Matches: 67, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 67 1.00
ACGTcount: A:0.34, C:0.10, G:0.19, T:0.37
Consensus pattern (27 bp):
ATTTTACAAACCAAGGGTATTTTGGTA
Found at i:75503964 original size:27 final size:27
Alignment explanation
Indices: 75503934--75504332 Score: 312
Period size: 27 Copynumber: 14.8 Consensus size: 27
75503924 GGTATTTTGG
* * * *
75503934 TAATTTTGTAAACCAAGGGTAAAATAA
1 TAATTTTATAAATCGAGGGTAAAATGA
* * *
75503961 TAATTCTGTAAATCGAGGGTAAAACGA
1 TAATTTTATAAATCGAGGGTAAAATGA
*
75503988 TAATTTTATAAATCGAGGGTAAAATGG
1 TAATTTTATAAATCGAGGGTAAAATGA
* *
75504015 TAATTCTATAAATCGAGGGTAAAATGG
1 TAATTTTATAAATCGAGGGTAAAATGA
* * *
75504042 TAATTTTATAAATTGAGGATAAAACGA
1 TAATTTTATAAATCGAGGGTAAAATGA
* * * *
75504069 TAACTTTGTAAATCGAGGGTAAAACGG
1 TAATTTTATAAATCGAGGGTAAAATGA
* * *
75504096 TAATTCTATAAATTGAGGGTAAAATGG
1 TAATTTTATAAATCGAGGGTAAAATGA
* ** * *
75504123 TAATTCTATAAATCGAAAGAAAAACGA
1 TAATTTTATAAATCGAGGGTAAAATGA
* * * * *
75504150 TAATTCTATAAATTGAAGGTGAAATGG
1 TAATTTTATAAATCGAGGGTAAAATGA
* * * *
75504177 TAATTCTGTAAATCGAGGGTAAAACGG
1 TAATTTTATAAATCGAGGGTAAAATGA
* * *
75504204 TAATTCTATAAATTGAGGGTAAAATGG
1 TAATTTTATAAATCGAGGGTAAAATGA
* ** * *
75504231 TAATTCTATAAATCGAAAGAAAAACGA
1 TAATTTTATAAATCGAGGGTAAAATGA
* * * * *
75504258 TAATTCTATAAATTGAAGGTGAAATGG
1 TAATTTTATAAATCGAGGGTAAAATGA
* * * *
75504285 TAATTCTGTAAATCGAGGGTAAAACGG
1 TAATTTTATAAATCGAGGGTAAAATGA
* * *
75504312 TAATTCTGTAAATCGGGGGTA
1 TAATTTTATAAATCGAGGGTA
75504333 CTTTTATACT
Statistics
Matches: 309, Mismatches: 63, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 309 1.00
ACGTcount: A:0.42, C:0.08, G:0.21, T:0.29
Consensus pattern (27 bp):
TAATTTTATAAATCGAGGGTAAAATGA
Found at i:75503981 original size:54 final size:54
Alignment explanation
Indices: 75503931--75504332 Score: 383
Period size: 54 Copynumber: 7.4 Consensus size: 54
75503921 AGGGGTATTT
* * * *
75503931 TGGTAATTTTGTAAACCAAGGGTAAAATAATAATTCTGTAAATCGAGGGTAAAA
1 TGGTAATTTTATAAATCGAGGGTAAAATGATAATTCTGTAAATCGAGGGTAAAA
* * * *
75503985 CGATAATTTTATAAATCGAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAA
1 TGGTAATTTTATAAATCGAGGGTAAAATGATAATTCTGTAAATCGAGGGTAAAA
* * *
75504039 TGGTAATTTTATAAATTGAGGATAAAACGATAACTT-TGTAAATCGAGGGTAAAA
1 TGGTAATTTTATAAATCGAGGGTAAAATGATAA-TTCTGTAAATCGAGGGTAAAA
* * * * * ** *
75504093 CGGTAATTCTATAAATTGAGGGTAAAATGGTAATTCTATAAATCGAAAGAAAAA
1 TGGTAATTTTATAAATCGAGGGTAAAATGATAATTCTGTAAATCGAGGGTAAAA
* * * * * * *
75504147 CGATAATTCTATAAATTGAAGGTGAAATGGTAATTCTGTAAATCGAGGGTAAAA
1 TGGTAATTTTATAAATCGAGGGTAAAATGATAATTCTGTAAATCGAGGGTAAAA
* * * * * ** *
75504201 CGGTAATTCTATAAATTGAGGGTAAAATGGTAATTCTATAAATCGAAAGAAAAA
1 TGGTAATTTTATAAATCGAGGGTAAAATGATAATTCTGTAAATCGAGGGTAAAA
* * * * * * *
75504255 CGATAATTCTATAAATTGAAGGTGAAATGGTAATTCTGTAAATCGAGGGTAAAA
1 TGGTAATTTTATAAATCGAGGGTAAAATGATAATTCTGTAAATCGAGGGTAAAA
* * * *
75504309 CGGTAATTCTGTAAATCGGGGGTA
1 TGGTAATTTTATAAATCGAGGGTA
75504333 CTTTTATACT
Statistics
Matches: 295, Mismatches: 51, Indels: 4
0.84 0.15 0.01
Matches are distributed among these distances:
53 2 0.01
54 291 0.99
55 2 0.01
ACGTcount: A:0.42, C:0.07, G:0.21, T:0.29
Consensus pattern (54 bp):
TGGTAATTTTATAAATCGAGGGTAAAATGATAATTCTGTAAATCGAGGGTAAAA
Found at i:75504065 original size:108 final size:108
Alignment explanation
Indices: 75503951--75504332 Score: 570
Period size: 108 Copynumber: 3.5 Consensus size: 108
75503941 GTAAACCAAG
* * *
75503951 GGTAAAATAATAATTCTGTAAATCGAGGGTAAAACGATAATTTTATAAATCGAGGGTAAAATGGT
1 GGTAAAATGATAATTCTGTAAATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAATGGT
** * * * *
75504016 AATTCTATAAATCGAGGGTAAAATGGTAATTTTATAAATTG-A
66 AATTCTATAAATCGAAAGAAAAACGATAATTCTATAAATTGAA
* *
75504058 GGATAAAACGATAACTT-TGTAAATCGAGGGTAAAACGGTAATTCTATAAATTGAGGGTAAAATG
1 GG-TAAAATGATAA-TTCTGTAAATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAATG
75504122 GTAATTCTATAAATCGAAAGAAAAACGATAATTCTATAAATTGAA
64 GTAATTCTATAAATCGAAAGAAAAACGATAATTCTATAAATTGAA
* * *
75504167 GGTGAAATGGTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTATAAATTGAGGGTAAAATGGT
1 GGTAAAATGATAATTCTGTAAATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAATGGT
75504232 AATTCTATAAATCGAAAGAAAAACGATAATTCTATAAATTGAA
66 AATTCTATAAATCGAAAGAAAAACGATAATTCTATAAATTGAA
* * * *
75504275 GGTGAAATGGTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCGGGGGTA
1 GGTAAAATGATAATTCTGTAAATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTA
75504333 CTTTTATACT
Statistics
Matches: 254, Mismatches: 17, Indels: 7
0.91 0.06 0.03
Matches are distributed among these distances:
107 4 0.02
108 245 0.96
109 5 0.02
ACGTcount: A:0.42, C:0.07, G:0.21, T:0.29
Consensus pattern (108 bp):
GGTAAAATGATAATTCTGTAAATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAATGGT
AATTCTATAAATCGAAAGAAAAACGATAATTCTATAAATTGAA
Found at i:75504440 original size:27 final size:26
Alignment explanation
Indices: 75504343--75504481 Score: 163
Period size: 27 Copynumber: 5.2 Consensus size: 26
75504333 CTTTTATACT
*
75504343 TTTTACAAGTCGAGGGTATTTCAGTAA
1 TTTTACAA-TCGAGGGTATTTCGGTAA
*
75504370 TTTTACAATCGACGGTATTTCGGTAA
1 TTTTACAATCGAGGGTATTTCGGTAA
* * *
75504396 TTTTATAAACTGGGGGTACTTT-GGTAA
1 TTTTACAATC-GAGGGTA-TTTCGGTAA
* *
75504423 TTTTACAAGTCGAAGGTATTTCAGTAA
1 TTTTACAA-TCGAGGGTATTTCGGTAA
75504450 TTTTACAAATCGAGGGTATTTCGGTAA
1 TTTTAC-AATCGAGGGTATTTCGGTAA
75504477 TTTTA
1 TTTTA
75504482 GTAAACTAAA
Statistics
Matches: 94, Mismatches: 13, Indels: 10
0.80 0.11 0.09
Matches are distributed among these distances:
26 27 0.29
27 61 0.65
28 6 0.06
ACGTcount: A:0.29, C:0.11, G:0.21, T:0.40
Consensus pattern (26 bp):
TTTTACAATCGAGGGTATTTCGGTAA
Found at i:75504468 original size:81 final size:83
Alignment explanation
Indices: 75504294--75504488 Score: 263
Period size: 81 Copynumber: 2.4 Consensus size: 83
75504284 GTAATTCTGT
*** * * * * *
75504294 AAATCGAGGGTAAAACGGTAATTCTGTAAA-TCGGGGGTACTTTTATACTTTTTACAAGTCGAGG
1 AAATCGAGGGTATTTCGGTAATTTTATAAACTCGGGGGTACTTTGATACATTTTACAAGTCGAAG
75504358 GTATTTCAGTAATTTTAC
66 GTATTTCAGTAATTTTAC
* *
75504376 -AATCGACGGTATTTCGGTAATTTTATAAACT-GGGGGTACTTTGGTA-ATTTTACAAGTCGAAG
1 AAATCGAGGGTATTTCGGTAATTTTATAAACTCGGGGGTACTTTGATACATTTTACAAGTCGAAG
75504438 GTATTTCAGTAATTTTAC
66 GTATTTCAGTAATTTTAC
75504456 AAATCGAGGGTATTTCGGTAATTTTAGTAAACT
1 AAATCGAGGGTATTTCGGTAATTTTA-TAAACT
75504489 AAAGTATTCT
Statistics
Matches: 99, Mismatches: 11, Indels: 6
0.85 0.09 0.05
Matches are distributed among these distances:
80 32 0.32
81 60 0.61
82 7 0.07
ACGTcount: A:0.30, C:0.11, G:0.22, T:0.37
Consensus pattern (83 bp):
AAATCGAGGGTATTTCGGTAATTTTATAAACTCGGGGGTACTTTGATACATTTTACAAGTCGAAG
GTATTTCAGTAATTTTAC
Found at i:75504496 original size:54 final size:53
Alignment explanation
Indices: 75504343--75504481 Score: 183
Period size: 54 Copynumber: 2.6 Consensus size: 53
75504333 CTTTTATACT
* * * *
75504343 TTTTACAAGTCGAGGGTATTTCAGTAATTTTACAATCGACGGTATTTCGGTAA
1 TTTTACAAATCGAGGGTATTTCGGTAATTTTACAATCGAAGGTATTTCAGTAA
* *
75504396 TTTTATAAA-CTGGGGGTACTTT-GGTAATTTTACAAGTCGAAGGTATTTCAGTAA
1 TTTTACAAATC-GAGGGTA-TTTCGGTAATTTTACAA-TCGAAGGTATTTCAGTAA
75504450 TTTTACAAATCGAGGGTATTTCGGTAATTTTA
1 TTTTACAAATCGAGGGTATTTCGGTAATTTTA
75504482 GTAAACTAAA
Statistics
Matches: 73, Mismatches: 8, Indels: 9
0.81 0.09 0.10
Matches are distributed among these distances:
52 1 0.01
53 28 0.38
54 43 0.59
55 1 0.01
ACGTcount: A:0.29, C:0.11, G:0.21, T:0.40
Consensus pattern (53 bp):
TTTTACAAATCGAGGGTATTTCGGTAATTTTACAATCGAAGGTATTTCAGTAA
Found at i:75507838 original size:23 final size:21
Alignment explanation
Indices: 75507810--75507858 Score: 57
Period size: 23 Copynumber: 2.3 Consensus size: 21
75507800 TAAAAAAGGG
75507810 TAATAAAT-AAATAGATAAATAGA
1 TAATAAATAAAATAG-T-AATA-A
75507833 TAAT-AATAAAATAGTAATAA
1 TAATAAATAAAATAGTAATAA
75507853 TAATAA
1 TAATAA
75507859 TGAAGGCATA
Statistics
Matches: 24, Mismatches: 0, Indels: 6
0.80 0.00 0.20
Matches are distributed among these distances:
20 5 0.21
21 5 0.21
22 4 0.17
23 10 0.42
ACGTcount: A:0.65, C:0.00, G:0.06, T:0.29
Consensus pattern (21 bp):
TAATAAATAAAATAGTAATAA
Found at i:75507850 original size:14 final size:15
Alignment explanation
Indices: 75507826--75507855 Score: 53
Period size: 14 Copynumber: 2.1 Consensus size: 15
75507816 ATAAATAGAT
75507826 AAATAGATAATAATA
1 AAATAGATAATAATA
75507841 AAATAG-TAATAATA
1 AAATAGATAATAATA
75507855 A
1 A
75507856 TAATGAAGGC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 9 0.60
15 6 0.40
ACGTcount: A:0.67, C:0.00, G:0.07, T:0.27
Consensus pattern (15 bp):
AAATAGATAATAATA
Found at i:75508017 original size:5 final size:4
Alignment explanation
Indices: 75507894--75508058 Score: 92
Period size: 4 Copynumber: 41.8 Consensus size: 4
75507884 CGATGATAGA
* * * * *
75507894 AAAT AAAA AAAT AAA- ATAT AAA- AAAT GAAG GAAT -AAT AAAT AAAT
1 AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT
* * * * *
75507939 AAAT AAAT ACAAG GATT AAAAT AAA- AAAT AAA- ATAT AAAT GAAT AAAT
1 AAAT AAAT A-AAT AAAT -AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT
* * * *
75507987 AAGT AAAT GAAC AAAT AAAT AAAT AAAAT AAA- AGGAA- CAAT AAAT AAAT
1 AAAT AAAT AAAT AAAT AAAT AAAT -AAAT AAAT A--AAT AAAT AAAT AAAT
* *
75508036 AAAC AAGT AAAT AAAT AAAT AAA
1 AAAT AAAT AAAT AAAT AAAT AAA
75508059 AGAATTAAAA
Statistics
Matches: 121, Mismatches: 29, Indels: 22
0.70 0.17 0.13
Matches are distributed among these distances:
3 16 0.13
4 95 0.79
5 10 0.08
ACGTcount: A:0.71, C:0.02, G:0.07, T:0.20
Consensus pattern (4 bp):
AAAT
Found at i:75508029 original size:41 final size:42
Alignment explanation
Indices: 75507957--75508060 Score: 133
Period size: 41 Copynumber: 2.5 Consensus size: 42
75507947 ACAAGGATTA
* * *
75507957 AAATAAA-AAATAAAATATAAATGAATAAATAAGTAAATGAAC
1 AAATAAATAAATAAAATA-AAAGGAATAAATAAATAAATAAAC
*
75507999 AAATAAATAAATAAAATAAAAGGAA-CAATAAATAAATAAAC
1 AAATAAATAAATAAAATAAAAGGAATAAATAAATAAATAAAC
*
75508040 AAGTAAATAAAT-AAATAAAAG
1 AAATAAATAAATAAAATAAAAG
75508061 AATTAAAATA
Statistics
Matches: 56, Mismatches: 5, Indels: 4
0.86 0.08 0.06
Matches are distributed among these distances:
40 9 0.16
41 24 0.43
42 13 0.23
43 10 0.18
ACGTcount: A:0.71, C:0.03, G:0.07, T:0.19
Consensus pattern (42 bp):
AAATAAATAAATAAAATAAAAGGAATAAATAAATAAATAAAC
Found at i:75509288 original size:13 final size:14
Alignment explanation
Indices: 75509272--75509300 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
75509262 TGTAAATGGA
75509272 ATTTGGACTTT-TT
1 ATTTGGACTTTATT
75509285 ATTTGGACTTTATT
1 ATTTGGACTTTATT
75509299 AT
1 AT
75509301 ATTTTTGGTT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 11 0.73
14 4 0.27
ACGTcount: A:0.21, C:0.07, G:0.14, T:0.59
Consensus pattern (14 bp):
ATTTGGACTTTATT
Found at i:75510771 original size:30 final size:30
Alignment explanation
Indices: 75510731--75510789 Score: 73
Period size: 30 Copynumber: 2.0 Consensus size: 30
75510721 TTTACGAGCC
* *
75510731 TAGGGACCAAAGTGCAAATATGTAAAAGTT
1 TAGGGACCAAAATGCAAATATGAAAAAGTT
* * *
75510761 TAGGGGCCAAAATGTAAATTTGAAAAAGT
1 TAGGGACCAAAATGCAAATATGAAAAAGT
75510790 ATGATTTATG
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.44, C:0.08, G:0.24, T:0.24
Consensus pattern (30 bp):
TAGGGACCAAAATGCAAATATGAAAAAGTT
Found at i:75523213 original size:2 final size:2
Alignment explanation
Indices: 75523206--75523239 Score: 59
Period size: 2 Copynumber: 17.0 Consensus size: 2
75523196 AGTCCTTGCA
*
75523206 AG AG AG AG AG AG AA AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
75523240 GAATCTTTGT
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.53, C:0.00, G:0.47, T:0.00
Consensus pattern (2 bp):
AG
Found at i:75529636 original size:28 final size:27
Alignment explanation
Indices: 75529578--75529729 Score: 223
Period size: 27 Copynumber: 5.6 Consensus size: 27
75529568 TAAATTGTGC
* *
75529578 AGCACTAAGTGTGCGAATTGAATATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
*
75529605 AGCACTAAGTGTGCGAGTTTGACTATGC
1 AGCACTAAGTGTGCGAG-TTGACTATGT
75529633 AGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
*
75529660 AGCACTAAGTGTGCGAGTATGATTATGT
1 AGCACTAAGTGTGCGAGT-TGACTATGT
* *
75529688 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGTTGACTATGT
*
75529715 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
75529730 GACTTAATAT
Statistics
Matches: 116, Mismatches: 7, Indels: 4
0.91 0.06 0.03
Matches are distributed among these distances:
27 65 0.56
28 51 0.44
ACGTcount: A:0.28, C:0.14, G:0.29, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGTTGACTATGT
Found at i:75529640 original size:55 final size:55
Alignment explanation
Indices: 75529575--75529729 Score: 238
Period size: 55 Copynumber: 2.8 Consensus size: 55
75529565 GTTTAAATTG
* *
75529575 TGCAGCACTAAGTGTGCGAATTGAATATGTAGCACTAAGTGTGCGAGTTTGACTA
1 TGCAGCACTAAGTGTGCGAGTTGAATATGTAGCACTAAGTGTGCGAGTATGACTA
* *
75529630 TGCAGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTATGATTA
1 TGCAGCACTAAGTGTGCGAGTTGAATATGTAGCACTAAGTGTGCGAGTATGACTA
* * * *
75529685 TGTAGCACTAAGTGTGCGAGTTGATTATATAGCACTGAGTGTGCG
1 TGCAGCACTAAGTGTGCGAGTTGAATATGTAGCACTAAGTGTGCG
75529730 GACTTAATAT
Statistics
Matches: 92, Mismatches: 8, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
55 92 1.00
ACGTcount: A:0.27, C:0.14, G:0.29, T:0.30
Consensus pattern (55 bp):
TGCAGCACTAAGTGTGCGAGTTGAATATGTAGCACTAAGTGTGCGAGTATGACTA
Found at i:75537749 original size:28 final size:27
Alignment explanation
Indices: 75537691--75537842 Score: 223
Period size: 27 Copynumber: 5.6 Consensus size: 27
75537681 TAAATTGTGC
* *
75537691 AGCACTAAGTGTGCGAATTGAATATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
*
75537718 AGCACTAAGTGTGCGAGTTTGACTATGC
1 AGCACTAAGTGTGCGAG-TTGACTATGT
75537746 AGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
*
75537773 AGCACTAAGTGTGCGAGTATGATTATGT
1 AGCACTAAGTGTGCGAGT-TGACTATGT
* *
75537801 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGTTGACTATGT
*
75537828 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
75537843 GACTTAATAT
Statistics
Matches: 116, Mismatches: 7, Indels: 4
0.91 0.06 0.03
Matches are distributed among these distances:
27 65 0.56
28 51 0.44
ACGTcount: A:0.28, C:0.14, G:0.29, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGTTGACTATGT
Found at i:75537753 original size:55 final size:55
Alignment explanation
Indices: 75537688--75537842 Score: 238
Period size: 55 Copynumber: 2.8 Consensus size: 55
75537678 GTTTAAATTG
* *
75537688 TGCAGCACTAAGTGTGCGAATTGAATATGTAGCACTAAGTGTGCGAGTTTGACTA
1 TGCAGCACTAAGTGTGCGAGTTGAATATGTAGCACTAAGTGTGCGAGTATGACTA
* *
75537743 TGCAGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTATGATTA
1 TGCAGCACTAAGTGTGCGAGTTGAATATGTAGCACTAAGTGTGCGAGTATGACTA
* * * *
75537798 TGTAGCACTAAGTGTGCGAGTTGATTATATAGCACTGAGTGTGCG
1 TGCAGCACTAAGTGTGCGAGTTGAATATGTAGCACTAAGTGTGCG
75537843 GACTTAATAT
Statistics
Matches: 92, Mismatches: 8, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
55 92 1.00
ACGTcount: A:0.27, C:0.14, G:0.29, T:0.30
Consensus pattern (55 bp):
TGCAGCACTAAGTGTGCGAGTTGAATATGTAGCACTAAGTGTGCGAGTATGACTA
Found at i:75541163 original size:50 final size:50
Alignment explanation
Indices: 75541088--75541184 Score: 176
Period size: 50 Copynumber: 1.9 Consensus size: 50
75541078 ATATGTATGT
75541088 GAAACATTAGCATCCAGTAAGACTCTACCTATTGAGTCTACTGAGTTTGC
1 GAAACATTAGCATCCAGTAAGACTCTACCTATTGAGTCTACTGAGTTTGC
* *
75541138 GAAACCTTAGCATCCAGTAAGACTCTACCTGTTGAGTCTACTGAGTT
1 GAAACATTAGCATCCAGTAAGACTCTACCTATTGAGTCTACTGAGTT
75541185 CGTAATTCGA
Statistics
Matches: 45, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
50 45 1.00
ACGTcount: A:0.29, C:0.23, G:0.19, T:0.30
Consensus pattern (50 bp):
GAAACATTAGCATCCAGTAAGACTCTACCTATTGAGTCTACTGAGTTTGC
Found at i:75543711 original size:26 final size:26
Alignment explanation
Indices: 75543682--75543738 Score: 96
Period size: 26 Copynumber: 2.2 Consensus size: 26
75543672 ATGAAATTCC
*
75543682 TATCTTGGAACATTTACCTAAACCAT
1 TATCATGGAACATTTACCTAAACCAT
*
75543708 TATCATGGAACATTTACCTAACCCAT
1 TATCATGGAACATTTACCTAAACCAT
75543734 TATCA
1 TATCA
75543739 ATTTGTACCA
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.35, C:0.25, G:0.07, T:0.33
Consensus pattern (26 bp):
TATCATGGAACATTTACCTAAACCAT
Found at i:75550747 original size:26 final size:26
Alignment explanation
Indices: 75550718--75550826 Score: 164
Period size: 26 Copynumber: 4.2 Consensus size: 26
75550708 ATGAAATTCC
* * *
75550718 TATCTTGGAACATTTACCTAAACTAT
1 TATCATGGAACATTTACCTAATCCAT
*
75550744 TATCATAGAACATTTACCTAATCCAT
1 TATCATGGAACATTTACCTAATCCAT
*
75550770 TATCATGGAATATTTACCTAATCCAT
1 TATCATGGAACATTTACCTAATCCAT
*
75550796 TATCATGGAACATTTACCTAACCCAT
1 TATCATGGAACATTTACCTAATCCAT
75550822 TATCA
1 TATCA
75550827 ATTTGTACCA
Statistics
Matches: 75, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 75 1.00
ACGTcount: A:0.36, C:0.22, G:0.06, T:0.36
Consensus pattern (26 bp):
TATCATGGAACATTTACCTAATCCAT
Found at i:75552924 original size:30 final size:30
Alignment explanation
Indices: 75552890--75552950 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
75552880 TCCTTAACTC
75552890 AAACTTTGGAAAAATTACAATTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
* * * * *
75552920 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
75552950 A
1 A
75552951 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACAATTTTGCCCCT
Found at i:75554811 original size:36 final size:36
Alignment explanation
Indices: 75554771--75554843 Score: 146
Period size: 36 Copynumber: 2.0 Consensus size: 36
75554761 TCACTTACAC
75554771 ATAGTTCCTTATTTGAGTTTACGGAGCCCAAAACAT
1 ATAGTTCCTTATTTGAGTTTACGGAGCCCAAAACAT
75554807 ATAGTTCCTTATTTGAGTTTACGGAGCCCAAAACAT
1 ATAGTTCCTTATTTGAGTTTACGGAGCCCAAAACAT
75554843 A
1 A
75554844 CTTTAGAAAG
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 37 1.00
ACGTcount: A:0.32, C:0.19, G:0.16, T:0.33
Consensus pattern (36 bp):
ATAGTTCCTTATTTGAGTTTACGGAGCCCAAAACAT
Found at i:75557404 original size:30 final size:30
Alignment explanation
Indices: 75557370--75557430 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
75557360 TCCTTAACTC
75557370 AAACTTTGGAAAAATTACAATTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
* * * * *
75557400 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
75557430 A
1 A
75557431 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACAATTTTGCCCCT
Found at i:75559726 original size:19 final size:18
Alignment explanation
Indices: 75559699--75559749 Score: 59
Period size: 19 Copynumber: 2.8 Consensus size: 18
75559689 TATAAAAATT
75559699 AATTT-TAAAAATTAAAA
1 AATTTATAAAAATTAAAA
*
75559716 ATATTTATAAAATTTTAAAA
1 A-ATTTATAAAA-ATTAAAA
*
75559736 AATATATAAAAATT
1 AATTTATAAAAATT
75559750 GACAAATTAA
Statistics
Matches: 28, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
17 1 0.04
18 6 0.21
19 14 0.50
20 7 0.25
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (18 bp):
AATTTATAAAAATTAAAA
Found at i:75563007 original size:19 final size:18
Alignment explanation
Indices: 75562976--75563014 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 18
75562966 CTTCCTAAAC
75562976 AAAATATTAAAAAAATCA
1 AAAATATTAAAAAAATCA
* *
75562994 AAAAGTATTTAAAAACTCA
1 AAAA-TATTAAAAAAATCA
75563013 AA
1 AA
75563015 TAAATTTTAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
18 4 0.22
19 14 0.78
ACGTcount: A:0.67, C:0.08, G:0.03, T:0.23
Consensus pattern (18 bp):
AAAATATTAAAAAAATCA
Found at i:75566042 original size:159 final size:159
Alignment explanation
Indices: 75565753--75566083 Score: 522
Period size: 159 Copynumber: 2.1 Consensus size: 159
75565743 GTGTGCTCTC
75565753 TACACGCCCATGTCCTCCAGCCGTGTAACTCTCTGACTATAACGTCAGCACCAATCTAGGGTCAC
1 TACACGCCCATGTCCTCCAGCCGTGTAACTCTCTGACTATAACGTCAGCACCAATCTAGGGTCAC
*
75565818 ACGGCCACATCACACGCTCGTGTGGCCAGACCGTGTGGTTAATTAAAAGTAAATGAATTTTTCAT
66 ACGGCCACATCACACGCCCGTGTGGCCAGACCGTGTGGTTAATTAAAAGTAAATGAATTTTTCAT
* * *
75565883 AAAAAGTTGTAGACTTTACATGGCCAGAG
131 AAAAAGGTGTAGACTTCACATAGCCAGAG
* * *
75565912 TACACGCCCATGTCCTCC-GACCGTGTAACTCT-TCGACTATGACGTCAGCAGCAATTTAGGGTC
1 TACACGCCCATGTCCTCCAG-CCGTGTAACTCTCT-GACTATAACGTCAGCACCAATCTAGGGTC
* * * *
75565975 ACACGGCCACATCATATGCCCGTGTGGCCAGACCGTGTGGTTAATTAAAATTAAATGATTTTTTC
64 ACACGGCCACATCACACGCCCGTGTGGCCAGACCGTGTGGTTAATTAAAAGTAAATGAATTTTTC
75566040 ATAAAAAGGTGTAGACTTCACATAGCCAGAG
129 ATAAAAAGGTGTAGACTTCACATAGCCAGAG
*
75566071 TACACGCCTATGT
1 TACACGCCCATGT
75566084 GGGTAGGCCG
Statistics
Matches: 158, Mismatches: 12, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
158 2 0.01
159 156 0.99
ACGTcount: A:0.28, C:0.25, G:0.20, T:0.26
Consensus pattern (159 bp):
TACACGCCCATGTCCTCCAGCCGTGTAACTCTCTGACTATAACGTCAGCACCAATCTAGGGTCAC
ACGGCCACATCACACGCCCGTGTGGCCAGACCGTGTGGTTAATTAAAAGTAAATGAATTTTTCAT
AAAAAGGTGTAGACTTCACATAGCCAGAG
Found at i:75567530 original size:43 final size:43
Alignment explanation
Indices: 75567481--75567562 Score: 128
Period size: 43 Copynumber: 1.9 Consensus size: 43
75567471 ATATGTATCA
* *
75567481 CATCCATTATAAACTCAGACCACTCAATGAGCTCAGATGATTG
1 CATCCATAATAAACTCAGACCACTCAACGAGCTCAGATGATTG
* *
75567524 CATCCATAATGAACTCGGACCACTCAACGAGCTCAGATG
1 CATCCATAATAAACTCAGACCACTCAACGAGCTCAGATG
75567563 CCACATATAT
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
43 35 1.00
ACGTcount: A:0.34, C:0.28, G:0.16, T:0.22
Consensus pattern (43 bp):
CATCCATAATAAACTCAGACCACTCAACGAGCTCAGATGATTG
Found at i:75572681 original size:44 final size:43
Alignment explanation
Indices: 75572617--75572775 Score: 159
Period size: 44 Copynumber: 3.7 Consensus size: 43
75572607 TATGTGTTTT
*
75572617 CGTGTAAGACCACATTTGGGACGTTGGCATCGACTTATGATTTA
1 CGTGTAAGACCACATCTGGGACGTTGGCATCGACTT-TGATTTA
* *
75572661 CGTGTAAGATCACGTCTGGGACGTTGGCATCGTAC-TTGAATTT-
1 CGTGTAAGACCACATCTGGGACGTTGGCATCG-ACTTTG-ATTTA
* * *
75572704 -GTGTAAGACC-CTGTCTGGGATAG-TGGCATCGATATTTGA-TTA
1 CGTGTAAGACCAC-ATCTGGGA-CGTTGGCATCGA-CTTTGATTTA
*
75572746 CATGTAAGACCACATCTGGGACGTTGGCAT
1 CGTGTAAGACCACATCTGGGACGTTGGCAT
75572776 TGTACGAGCT
Statistics
Matches: 96, Mismatches: 9, Indels: 21
0.76 0.07 0.17
Matches are distributed among these distances:
41 4 0.04
42 27 0.28
43 28 0.29
44 35 0.36
45 2 0.02
ACGTcount: A:0.24, C:0.18, G:0.27, T:0.31
Consensus pattern (43 bp):
CGTGTAAGACCACATCTGGGACGTTGGCATCGACTTTGATTTA
Found at i:75572774 original size:43 final size:43
Alignment explanation
Indices: 75572617--75572775 Score: 157
Period size: 43 Copynumber: 3.7 Consensus size: 43
75572607 TATGTGTTTT
* *
75572617 CGTGTAAGACCACATTTGGGACGTTGGCATCGACT-TATGATTTA
1 CGTGTAAGACCACATCTGGGACGTTGGCATCGA-TATTTGA-TTA
* * *
75572661 CGTGTAAGATCACGTCTGGGACGTTGGCATCG-TACTTGAATT-
1 CGTGTAAGACCACATCTGGGACGTTGGCATCGATATTTG-ATTA
* * *
75572703 TGTGTAAGACC-CTGTCTGGGATAG-TGGCATCGATATTTGATTA
1 CGTGTAAGACCAC-ATCTGGGA-CGTTGGCATCGATATTTGATTA
*
75572746 CATGTAAGACCACATCTGGGACGTTGGCAT
1 CGTGTAAGACCACATCTGGGACGTTGGCAT
75572776 TGTACGAGCT
Statistics
Matches: 94, Mismatches: 13, Indels: 17
0.76 0.10 0.14
Matches are distributed among these distances:
41 1 0.01
42 30 0.32
43 32 0.34
44 31 0.33
ACGTcount: A:0.24, C:0.18, G:0.27, T:0.31
Consensus pattern (43 bp):
CGTGTAAGACCACATCTGGGACGTTGGCATCGATATTTGATTA
Found at i:75578220 original size:10 final size:10
Alignment explanation
Indices: 75578204--75578233 Score: 51
Period size: 10 Copynumber: 3.0 Consensus size: 10
75578194 TTAAAACTTG
75578204 AATTTAAAAT
1 AATTTAAAAT
*
75578214 CATTTAAAAT
1 AATTTAAAAT
75578224 AATTTAAAAT
1 AATTTAAAAT
75578234 TATTAGTACT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
10 18 1.00
ACGTcount: A:0.57, C:0.03, G:0.00, T:0.40
Consensus pattern (10 bp):
AATTTAAAAT
Found at i:75580021 original size:371 final size:370
Alignment explanation
Indices: 75579338--75580078 Score: 1401
Period size: 371 Copynumber: 2.0 Consensus size: 370
75579328 ATAGTGTCCT
* *
75579338 CCGGTTGGCCTTGAGTGGCAGTGTTCCAATATTTTTGATATTTCTGATCCTGTAACGCATCTTCT
1 CCGGTTGGCCTTGAGTGGCAGTGTTCCAATATTTTTGATATTTCTGAACATGTAACGCATCTTCT
*
75579403 GATGACTTGATCTGCACATCTGTGAAACAGAAATGGATCTTCCCAAAAGTAGTTTTTCACATCAT
66 GATGACTTGATCTGCACATCTGTGAAACAGAAATGGATCGTCCCAAAAGTAGTTTTTCACATCAT
75579468 TAAAGAAACGCTTCTTTTGCTGGTGTGTTAACCCTTTTGGGATAATGTTAGCAGCTAAAAAATTT
131 TAAAGAAACGCTTCTTTTGCTGGTGTGTTAACCCTTTTGGGATAATGTTAGCAGCTAAAAAATTT
*
75579533 GCGATGTCTGCAAACCAAGGTACCTCGTAGTTAGATATAGTGAAAAATTGTTCTTCAGAGAACGA
196 GCGATGTCTGCAAACCAAGGTACCTCGTAGTTAGATATAGTGAAAAATTGTTCTTCAGAGAACAA
75579598 ATCATTTATTTCCACGTCATCTAGTTCTCTGGTATTGGATTTCTCGAGCCTGGACAGATGATCAG
261 ATCATTTATTTCCACGTCATCTAGTTCTCTGGTATTGGATTTCTCGAGCCTGGACAGATGATCAG
* *
75579663 CCGCGAGATTTTCAGCTCTTTTCTTGTCCTGAATTTCCAAGTCAAA
326 CCGCGAGA-TTTCAGCTCCTTTCTTGTCCTAAATTTCCAAGTCAAA
75579709 CCGGTTGGCCTTGAGTGGCAGTGTTCCAATATTTTTGATATTTCTGAACATGTAACGCATCTTCT
1 CCGGTTGGCCTTGAGTGGCAGTGTTCCAATATTTTTGATATTTCTGAACATGTAACGCATCTTCT
75579774 GATGACTTGATCTGCACATCTGTGAAACAGAAATGGATCGTCCCAAAAGTAGTTTTTCACATCAT
66 GATGACTTGATCTGCACATCTGTGAAACAGAAATGGATCGTCCCAAAAGTAGTTTTTCACATCAT
75579839 TAAAGAAACGCTTCTTTTGCTGGTGTGTTAACCCTTTTGGGATAATGTTAGCAGCTAAAAAATTT
131 TAAAGAAACGCTTCTTTTGCTGGTGTGTTAACCCTTTTGGGATAATGTTAGCAGCTAAAAAATTT
*
75579904 GCGATGTCTGCAAACCAAGGTACCTCGTAGTTAGATATAGTGAAAAATTGTTCTTCAGGGAACAA
196 GCGATGTCTGCAAACCAAGGTACCTCGTAGTTAGATATAGTGAAAAATTGTTCTTCAGAGAACAA
75579969 ATCATTTATTTCCACGTCATCTAGTTCTCTGGTATTGGATTTCTCGAGCCTGGACAGATGATCAG
261 ATCATTTATTTCCACGTCATCTAGTTCTCTGGTATTGGATTTCTCGAGCCTGGACAGATGATCAG
*
75580034 CTGCGAGATTTCAGCTCCTTTCTTGTCCTAAATTTCCAAGTCAAA
326 CCGCGAGATTTCAGCTCCTTTCTTGTCCTAAATTTCCAAGTCAAA
75580079 TTCTTGTAAT
Statistics
Matches: 362, Mismatches: 8, Indels: 1
0.98 0.02 0.00
Matches are distributed among these distances:
370 35 0.10
371 327 0.90
ACGTcount: A:0.27, C:0.20, G:0.20, T:0.34
Consensus pattern (370 bp):
CCGGTTGGCCTTGAGTGGCAGTGTTCCAATATTTTTGATATTTCTGAACATGTAACGCATCTTCT
GATGACTTGATCTGCACATCTGTGAAACAGAAATGGATCGTCCCAAAAGTAGTTTTTCACATCAT
TAAAGAAACGCTTCTTTTGCTGGTGTGTTAACCCTTTTGGGATAATGTTAGCAGCTAAAAAATTT
GCGATGTCTGCAAACCAAGGTACCTCGTAGTTAGATATAGTGAAAAATTGTTCTTCAGAGAACAA
ATCATTTATTTCCACGTCATCTAGTTCTCTGGTATTGGATTTCTCGAGCCTGGACAGATGATCAG
CCGCGAGATTTCAGCTCCTTTCTTGTCCTAAATTTCCAAGTCAAA
Found at i:75586610 original size:14 final size:14
Alignment explanation
Indices: 75586593--75586632 Score: 55
Period size: 14 Copynumber: 2.8 Consensus size: 14
75586583 AAAAAAGAGC
75586593 GAAAAGAAAAATGA-
1 GAAAAGAAAAAT-AT
75586607 GAAAAGAAAAATAT
1 GAAAAGAAAAATAT
75586621 GAAAAAGAAAAA
1 G-AAAAGAAAAA
75586633 GAAAATGAGT
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
13 1 0.04
14 13 0.54
15 10 0.42
ACGTcount: A:0.75, C:0.00, G:0.17, T:0.07
Consensus pattern (14 bp):
GAAAAGAAAAATAT
Found at i:75586617 original size:15 final size:16
Alignment explanation
Indices: 75586593--75586632 Score: 59
Period size: 15 Copynumber: 2.7 Consensus size: 16
75586583 AAAAAAGAGC
75586593 GAAAAG-AAAA-ATGA
1 GAAAAGAAAAATATGA
75586607 GAAAAGAAAAATATGA
1 GAAAAGAAAAATATGA
75586623 -AAAAGAAAAA
1 GAAAAGAAAAA
75586633 GAAAATGAGT
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
14 6 0.25
15 14 0.58
16 4 0.17
ACGTcount: A:0.75, C:0.00, G:0.17, T:0.07
Consensus pattern (16 bp):
GAAAAGAAAAATATGA
Found at i:75586649 original size:14 final size:14
Alignment explanation
Indices: 75586632--75586659 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
75586622 AAAAAGAAAA
75586632 AGAAAATGAGTGTG
1 AGAAAATGAGTGTG
75586646 AGAAAATGAGTGTG
1 AGAAAATGAGTGTG
75586660 TTTGCAAAAG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.43, C:0.00, G:0.36, T:0.21
Consensus pattern (14 bp):
AGAAAATGAGTGTG
Found at i:75594552 original size:93 final size:93
Alignment explanation
Indices: 75594440--75594610 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
75594430 GCCCATAAGT
* *
75594440 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
75594505 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
75594533 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
75594598 CGAGTTCGGATGC
66 CGAGTTCGGATGC
75594611 TCAACCATCC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:75594607 original size:46 final size:46
Alignment explanation
Indices: 75594432--75594607 Score: 225
Period size: 46 Copynumber: 3.8 Consensus size: 46
75594422 TGTAACCCGC
* * *
75594432 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
75594478 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
* *
75594528 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
75594571 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
75594608 TGCTCAACCA
Statistics
Matches: 112, Mismatches: 9, Indels: 18
0.81 0.06 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 64 0.57
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:75599261 original size:19 final size:19
Alignment explanation
Indices: 75599234--75599280 Score: 85
Period size: 19 Copynumber: 2.5 Consensus size: 19
75599224 ATAGGGGACG
75599234 CGCCCGTGTGTTCTCTACA
1 CGCCCGTGTGTTCTCTACA
*
75599253 CGCCAGTGTGTTCTCTACA
1 CGCCCGTGTGTTCTCTACA
75599272 CGCCCGTGT
1 CGCCCGTGT
75599281 CCTCCGGCCG
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
19 26 1.00
ACGTcount: A:0.11, C:0.36, G:0.23, T:0.30
Consensus pattern (19 bp):
CGCCCGTGTGTTCTCTACA
Found at i:75600888 original size:43 final size:43
Alignment explanation
Indices: 75600824--75600906 Score: 130
Period size: 43 Copynumber: 1.9 Consensus size: 43
75600814 ATATGTATCA
* * * *
75600824 CATCCATTATGAACTCGGACCACTCAACGAGCTCGGATGCTCG
1 CATCCATAATAAACTCAGACCACTCAAAGAGCTCGGATGCTCG
75600867 CATCCATAATAAACTCAGACCACTCAAAGAGCTCGGATGC
1 CATCCATAATAAACTCAGACCACTCAAAGAGCTCGGATGC
75600907 CACATATATC
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
43 36 1.00
ACGTcount: A:0.31, C:0.31, G:0.18, T:0.19
Consensus pattern (43 bp):
CATCCATAATAAACTCAGACCACTCAAAGAGCTCGGATGCTCG
Found at i:75619983 original size:25 final size:25
Alignment explanation
Indices: 75619955--75620060 Score: 90
Period size: 25 Copynumber: 4.3 Consensus size: 25
75619945 CCATATAATA
75619955 GGAAGCTCATGTGAGCCATGTAACG
1 GGAAGCTCATGTGAGCCATGTAACG
* * * *** *
75619980 GGAAGCTTATCTGGGTTGTATAACG
1 GGAAGCTCATGTGAGCCATGTAACG
* ** *
75620005 AGAAGCTCATAAGAGCCA--TAATCA
1 GGAAGCTCATGTGAGCCATGTAA-CG
75620029 GGAAGCTCATGTGAGCCATGTAACG
1 GGAAGCTCATGTGAGCCATGTAACG
75620054 GGAAGCT
1 GGAAGCT
75620061 TATACGGGCT
Statistics
Matches: 58, Mismatches: 20, Indels: 6
0.69 0.24 0.07
Matches are distributed among these distances:
23 3 0.05
24 16 0.28
25 36 0.62
26 3 0.05
ACGTcount: A:0.31, C:0.18, G:0.29, T:0.22
Consensus pattern (25 bp):
GGAAGCTCATGTGAGCCATGTAACG
Found at i:75620035 original size:24 final size:24
Alignment explanation
Indices: 75620006--75620159 Score: 89
Period size: 24 Copynumber: 6.3 Consensus size: 24
75619996 TGTATAACGA
75620006 GAAGCTCATAAGAGCCATAATCAG
1 GAAGCTCATAAGAGCCATAATCAG
** *
75620030 GAAGCTCATGTGAGCCATGTAA-CGG
1 GAAGCTCATAAGAGCCA--TAATCAG
* * * * *
75620055 GAAGCTTATACGGGCTGTATAAT-AA
1 GAAGCTCATAAGAGC--CATAATCAG
*
75620080 GAAGCTCATAAGAGTCATAATCAG
1 GAAGCTCATAAGAGCCATAATCAG
** *
75620104 GAAGCTCATGCGAGCCAATAA-CGG
1 GAAGCTCATAAGAGCC-ATAATCAG
* ** *
75620128 GTAGCTCCGAAGAGCCATTAATTAG
1 GAAGCTCATAAGAGCCA-TAATCAG
75620153 GAAGCTC
1 GAAGCTC
75620160 CGAATAGCCA
Statistics
Matches: 93, Mismatches: 28, Indels: 17
0.67 0.20 0.12
Matches are distributed among these distances:
23 6 0.06
24 45 0.48
25 38 0.41
26 3 0.03
27 1 0.01
ACGTcount: A:0.35, C:0.19, G:0.25, T:0.20
Consensus pattern (24 bp):
GAAGCTCATAAGAGCCATAATCAG
Found at i:75620039 original size:74 final size:74
Alignment explanation
Indices: 75619949--75620133 Score: 277
Period size: 74 Copynumber: 2.5 Consensus size: 74
75619939 CTCAAGCCAT
* *
75619949 ATAAT-AGGAAGCTCATGTGAGCCATGTAACGGGAAGCTTAT-CTGGGTTGTATAACGAGAAGCT
1 ATAATCAGGAAGCTCATGTGAGCCATGTAACGGGAAGCTTATAC-GGGCTGTATAACAAGAAGCT
75620012 CATAAGAGCC
65 CATAAGAGCC
*
75620022 ATAATCAGGAAGCTCATGTGAGCCATGTAACGGGAAGCTTATACGGGCTGTATAATAAGAAGCTC
1 ATAATCAGGAAGCTCATGTGAGCCATGTAACGGGAAGCTTATACGGGCTGTATAACAAGAAGCTC
*
75620087 ATAAGAGTC
66 ATAAGAGCC
* * *
75620096 ATAATCAGGAAGCTCATGCGAGCCA-ATAACGGGTAGCT
1 ATAATCAGGAAGCTCATGTGAGCCATGTAACGGGAAGCT
75620134 CCGAAGAGCC
Statistics
Matches: 103, Mismatches: 7, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
73 16 0.16
74 86 0.83
75 1 0.01
ACGTcount: A:0.34, C:0.17, G:0.26, T:0.22
Consensus pattern (74 bp):
ATAATCAGGAAGCTCATGTGAGCCATGTAACGGGAAGCTTATACGGGCTGTATAACAAGAAGCTC
ATAAGAGCC
Found at i:75620180 original size:25 final size:25
Alignment explanation
Indices: 75620130--75620212 Score: 84
Period size: 25 Copynumber: 3.4 Consensus size: 25
75620120 AATAACGGGT
* *
75620130 AGCTCCGAAGAGCCAT-TAATTAGGA
1 AGCTCCGAATAGCCATAT-ATTGGGA
75620155 AGCTCCGAATAGCCATATATTGGGA
1 AGCTCCGAATAGCCATATATTGGGA
*
75620180 AG-TTC-AAGTGAGCCA-ATATTGGGA
1 AGCTCCGAA-T-AGCCATATATTGGGA
75620204 AGCTCCGAA
1 AGCTCCGAA
75620213 GTGCTGTTAA
Statistics
Matches: 49, Mismatches: 4, Indels: 9
0.79 0.06 0.15
Matches are distributed among these distances:
23 2 0.04
24 14 0.29
25 30 0.61
26 3 0.06
ACGTcount: A:0.34, C:0.19, G:0.25, T:0.22
Consensus pattern (25 bp):
AGCTCCGAATAGCCATATATTGGGA
Found at i:75620181 original size:74 final size:75
Alignment explanation
Indices: 75620074--75620249 Score: 171
Period size: 74 Copynumber: 2.4 Consensus size: 75
75620064 ACGGGCTGTA
* * ** * *
75620074 TAAT-AAGAAGCTCA-TAAGAGTCATA-ATCAGGAAGCTCATGCGAGCCAATAACGGGTAGCTCC
1 TAATCAAGAAGCTCACAAAGAGCCATATATTGGGAAGCTCAAGCGAGCCAATAACGGGAAGCTCC
75620136 GAAGAGCCAT
66 GAAGAGCCAT
* * * * * * **
75620146 TAATTAGGAAGCTC-CGAATAGCCATATATTGGGAAGTTCAAGTGAGCCAATATTGGGAAGCTCC
1 TAATCAAGAAGCTCACAAAGAGCCATATATTGGGAAGCTCAAGCGAGCCAATAACGGGAAGCTCC
* **
75620210 GAAGTGCTGT
66 GAAGAGCCAT
75620220 TAATCAAGAAGCTCACAAAGAGCCATATAT
1 TAATCAAGAAGCTCACAAAGAGCCATATAT
75620250 CAGAATGCTC
Statistics
Matches: 81, Mismatches: 19, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
72 4 0.05
73 16 0.20
74 48 0.59
75 13 0.16
ACGTcount: A:0.36, C:0.19, G:0.23, T:0.22
Consensus pattern (75 bp):
TAATCAAGAAGCTCACAAAGAGCCATATATTGGGAAGCTCAAGCGAGCCAATAACGGGAAGCTCC
GAAGAGCCAT
Found at i:75626781 original size:11 final size:9
Alignment explanation
Indices: 75626748--75626778 Score: 55
Period size: 9 Copynumber: 3.6 Consensus size: 9
75626738 GTAATATTTT
75626748 TATA-TAAA
1 TATATTAAA
75626756 TATATTAAA
1 TATATTAAA
75626765 TATATTAAA
1 TATATTAAA
75626774 TATAT
1 TATAT
75626779 ATTTTTTAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
8 4 0.18
9 18 0.82
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (9 bp):
TATATTAAA
Found at i:75627846 original size:23 final size:23
Alignment explanation
Indices: 75627803--75627847 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
75627793 AAACAAAATT
* *
75627803 AAAAAAAAAACTTGTTTATTTTC
1 AAAAAAAAAACTTATTAATTTTC
75627826 AAAAAAAAATA-TTATTAATTTT
1 AAAAAAAAA-ACTTATTAATTTT
75627848 TGTATTATAC
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 18 0.95
24 1 0.05
ACGTcount: A:0.53, C:0.04, G:0.02, T:0.40
Consensus pattern (23 bp):
AAAAAAAAAACTTATTAATTTTC
Found at i:75648187 original size:5 final size:5
Alignment explanation
Indices: 75648177--75648202 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
75648167 AAATATATAC
75648177 ATAAA ATAAA ATAAA ATAAA ATAAA A
1 ATAAA ATAAA ATAAA ATAAA ATAAA A
75648203 AACCTGTCCT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (5 bp):
ATAAA
Found at i:75649878 original size:21 final size:21
Alignment explanation
Indices: 75649854--75649919 Score: 55
Period size: 21 Copynumber: 3.1 Consensus size: 21
75649844 GTGGAGGATC
75649854 TTGCAGAAACTGTGGGCTTAG
1 TTGCAGAAACTGTGGGCTTAG
* * *
75649875 TTGCAGGAGA-TG-GAGCCTTGG
1 TTGCA-GAAACTGTG-GGCTTAG
* *
75649896 CTGCAGAAACTGTGGGTTTAG
1 TTGCAGAAACTGTGGGCTTAG
75649917 TTG
1 TTG
75649920 ACGAAGTTAA
Statistics
Matches: 32, Mismatches: 9, Indels: 8
0.65 0.18 0.16
Matches are distributed among these distances:
20 4 0.12
21 24 0.75
22 4 0.12
ACGTcount: A:0.21, C:0.14, G:0.36, T:0.29
Consensus pattern (21 bp):
TTGCAGAAACTGTGGGCTTAG
Found at i:75652082 original size:5 final size:5
Alignment explanation
Indices: 75652072--75652101 Score: 60
Period size: 5 Copynumber: 6.0 Consensus size: 5
75652062 AAACAATACC
75652072 TTAAA TTAAA TTAAA TTAAA TTAAA TTAAA
1 TTAAA TTAAA TTAAA TTAAA TTAAA TTAAA
75652102 GGAATAAACA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 25 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (5 bp):
TTAAA
Found at i:75653574 original size:36 final size:37
Alignment explanation
Indices: 75653534--75653627 Score: 109
Period size: 38 Copynumber: 2.5 Consensus size: 37
75653524 GTTTTCTAGC
* *
75653534 ATAGTGGTTTGTCATGGGATA-TCTTTAGTTTTAAGG
1 ATAGTGGTTTGTCATGGGATACTCTCTAGTTTTAAAG
* *
75653570 ATAGTGGCTTGTTATGGGATACGTCTCTAGTTTTAAAG
1 ATAGTGGTTTGTCATGGGATAC-TCTCTAGTTTTAAAG
* * *
75653608 ATAATAGTTTGTCATAGGAT
1 ATAGTGGTTTGTCATGGGAT
75653628 GTAAGCCTAT
Statistics
Matches: 47, Mismatches: 9, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
36 19 0.40
38 28 0.60
ACGTcount: A:0.26, C:0.07, G:0.26, T:0.41
Consensus pattern (37 bp):
ATAGTGGTTTGTCATGGGATACTCTCTAGTTTTAAAG
Found at i:75654621 original size:46 final size:46
Alignment explanation
Indices: 75654554--75654648 Score: 190
Period size: 46 Copynumber: 2.1 Consensus size: 46
75654544 ATTGTTCATT
75654554 AACTTGGAATCTAATATAAGTTCTTTCAAAATCTTATACTTAGAAA
1 AACTTGGAATCTAATATAAGTTCTTTCAAAATCTTATACTTAGAAA
75654600 AACTTGGAATCTAATATAAGTTCTTTCAAAATCTTATACTTAGAAA
1 AACTTGGAATCTAATATAAGTTCTTTCAAAATCTTATACTTAGAAA
75654646 AAC
1 AAC
75654649 ATGTATATTT
Statistics
Matches: 49, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
46 49 1.00
ACGTcount: A:0.42, C:0.14, G:0.08, T:0.36
Consensus pattern (46 bp):
AACTTGGAATCTAATATAAGTTCTTTCAAAATCTTATACTTAGAAA
Found at i:75654908 original size:20 final size:20
Alignment explanation
Indices: 75654883--75654923 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
75654873 AATCAACTAA
75654883 TTCTAATGCATTCAAACATG
1 TTCTAATGCATTCAAACATG
75654903 TTCTAATGCATTCAAACATG
1 TTCTAATGCATTCAAACATG
75654923 T
1 T
75654924 GCTAGTACAT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.34, C:0.20, G:0.10, T:0.37
Consensus pattern (20 bp):
TTCTAATGCATTCAAACATG
Found at i:75658519 original size:26 final size:26
Alignment explanation
Indices: 75658487--75658536 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
75658477 CATATACTGA
75658487 TACTGGCAGCTTTGCTGCGATATTAT
1 TACTGGCAGCTTTGCTGCGATATTAT
*
75658513 TACTGGCAGCTTTGTTGCGATATT
1 TACTGGCAGCTTTGCTGCGATATT
75658537 GATGTGTTGG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.18, C:0.18, G:0.24, T:0.40
Consensus pattern (26 bp):
TACTGGCAGCTTTGCTGCGATATTAT
Found at i:75676668 original size:46 final size:47
Alignment explanation
Indices: 75676438--75676754 Score: 192
Period size: 46 Copynumber: 6.7 Consensus size: 47
75676428 TATAATGCCA
* * *
75676438 ATGCTATGCCCCAGACATGGTCTTACACTGGC-T-CATCCATC-AAGTCG
1 ATGC-ATGTCCCAGACATGGTCTTACACTGGCTTACAT-C-TCGAGGCCG
* **
75676485 ATGCCATGTCCCAGACATGGTCTTACACTGAC-TATCAAAATCGAGGCCG
1 ATG-CATGTCCCAGACATGGTCTTACACTGGCTTA-C-ATCTCGAGGCCG
* * * * * * *
75676534 ACGCCATGTACTAGACATGGTCTTACACTAGCTCTCACATATCCG-TGCTG
1 ATG-CATGTCCCAGACATGGTCTTACACTGGCT-T-ACATCT-CGAGGCCG
* * * *
75676584 ATGCCATGTCCTATG-CATGGTCTTACATTGAC--ATATCTCGTA-GCCG
1 ATG-CATGTCCCA-GACATGGTCTTACACTGGCTTACATCTCG-AGGCCG
75676630 ATGCATGTCCCAGACAT-GTCTTACACTGGCTTACATCTCGAGGCCG
1 ATGCATGTCCCAGACATGGTCTTACACTGGCTTACATCTCGAGGCCG
* * * * *
75676676 ATGAATGTCCCAGACAT-GTCTTACACTAGCTCT-CGTCTCAATGCC-
1 ATGCATGTCCCAGACATGGTCTTACACTGGCT-TACATCTCGAGGCCG
*
75676721 ATTGCGATGTCCCAGACATGGTCTTACCCTGGCT
1 A-TGC-ATGTCCCAGACATGGTCTTACACTGGCT
75676755 CACAAACAAC
Statistics
Matches: 216, Mismatches: 34, Indels: 39
0.75 0.12 0.13
Matches are distributed among these distances:
44 12 0.06
45 15 0.07
46 61 0.28
47 43 0.20
48 15 0.07
49 32 0.15
50 32 0.15
51 5 0.02
52 1 0.00
ACGTcount: A:0.23, C:0.30, G:0.20, T:0.27
Consensus pattern (47 bp):
ATGCATGTCCCAGACATGGTCTTACACTGGCTTACATCTCGAGGCCG
Found at i:75678278 original size:27 final size:27
Alignment explanation
Indices: 75678223--75678281 Score: 82
Period size: 27 Copynumber: 2.2 Consensus size: 27
75678213 TTTATAAAAA
* * *
75678223 TTAAAATTTTAATTTTAGAGTGTATAT
1 TTAATATTTTAATTTTAGAATGTACAT
*
75678250 TTAATATTTTAATTTTAGAATGTCCAT
1 TTAATATTTTAATTTTAGAATGTACAT
75678277 TTAAT
1 TTAAT
75678282 TTTATTTAAC
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.36, C:0.03, G:0.08, T:0.53
Consensus pattern (27 bp):
TTAATATTTTAATTTTAGAATGTACAT
Found at i:75679380 original size:22 final size:21
Alignment explanation
Indices: 75679361--75679400 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
75679351 CCCATGTGGT
75679361 CCAAGGGACACGCCTGTGTGA
1 CCAAGGGACACGCCTGTGTGA
**
75679382 CCCTGGGACACGCCTGTGT
1 CCAAGGGACACGCCTGTGT
75679401 TGAAGGCCGT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.17, C:0.33, G:0.33, T:0.17
Consensus pattern (21 bp):
CCAAGGGACACGCCTGTGTGA
Done.